LOCUS       DAXHPV010000001        39840 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.001, whole genome shotgun sequence.
ACCESSION   DAXHPV010000001 DAXHPV010000000
VERSION     DAXHPV010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 39840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39840
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.001"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(79..771)
                     /locus_tag="ACFM6C_000001"
     CDS             complement(79..771)
                     /locus_tag="ACFM6C_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HFC6157532.1"
                     /translation="MFHAFILRIYTMIKNISKLINHAVLIGFIPNIVFAYPIFAENPA
                     SYQNIHVRSWKARRDSGIVKQDLDFSCGAASIATLLNNFYGRHYSEAEILDKMDKTQM
                     RASFDDMQRIMPELGFEAQGYALPFEQLVQLKIPVIVYLKYRKNNHFSVLNGINGETV
                     LLADPSLGHVSMSKSQFLSAWKTRDGEMEGKILAIVPKNTDFVRNQMFFNKNPVRQTR
                     FTVEQIQMRQKR"
     gene            complement(1077..1634)
                     /locus_tag="ACFM6C_000002"
     CDS             complement(1077..1634)
                     /locus_tag="ACFM6C_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157533.1"
                     /translation="MMQKHKCLIDFILTVASQIAYADLPLSLEELLTDKGKFKLESSI
                     SYINTERNQSEFANPIYVQTSATKIATVMAMMITPVMAQNLDSQVFDSQNVKAIQLSQ
                     AEMKETQGEFVPIIAAAAFGGALGAWEYHGANLYNHGKLGTAQGAATAAGIGAATGVA
                     AKQGWLLLPEADWLEIWHGDRVFMH"
     gene            complement(1879..2037)
                     /locus_tag="ACFM6C_000003"
     CDS             complement(1879..2037)
                     /locus_tag="ACFM6C_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157534.1"
                     /translation="MKPPLPICTLSALAACTLSGQGGSRVYGEIKARDLCVTAPILLS
                     AFCLACSR"
     gene            complement(2034..2876)
                     /locus_tag="ACFM6C_000004"
     CDS             complement(2034..2876)
                     /locus_tag="ACFM6C_000004"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFC6157535.1"
                     /translation="MLVCNPYEVVIHGTTSSGKIFRPSDWAERLCGILSSFTKDHRLS
                     YSKWVRPMLVDNIRCVAVDKKLETDNPQMFRFLMDFAADNDLRVIDCKALLEEREQGG
                     QNNPADEHVMLAQAIEEKHAAEKAQEQTASGASYVLREIGADDTATAFAALSVLRSAL
                     TDINRFTEQINKVQRPQGYRLLGIFEEGKHNAVAVCGFREACTLASGRHIHIDDIVTL
                     PQSRRKGYASRLLEEVRKIGAETGVTKIHLNVHVNHDRADAHRLYFKNGFEICAYHFR
                     CDPK"
     gene            3115..4035
                     /gene="pyrB"
                     /locus_tag="ACFM6C_000005"
     CDS             3115..4035
                     /gene="pyrB"
                     /locus_tag="ACFM6C_000005"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003677959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HFC6157536.1"
                     /translation="MPNPLYRQHIISISDLSREQLECLLQTALKLKAHPRGDLLEGKL
                     IGSCFFEPSTRTRLSFETAVQRLGGKVIGFSDGANTSAKKGETLADTARIISGYTDAI
                     IQRHPKDGAARVAAEFSRVPVINAGDGTNQHPSQTLLDLVTIYETQGRLDKLKIAMAG
                     DLKYGRTVHSLCQALKRWGCEFAFVSPPSLAMPDYITEELDEAGCRYRILGSLEEAAE
                     WADILYMTRVQRERFDEQEFAKIQGKFNLDASMLARAKPNLRVLHPLPRVDEIHPDVD
                     ATPHAYYFEQATNGVYARMAILSLVLNEEV"
     gene            4045..4503
                     /gene="pyrI"
                     /locus_tag="ACFM6C_000006"
     CDS             4045..4503
                     /gene="pyrI"
                     /locus_tag="ACFM6C_000006"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009347 - aspartate carbamoyltransferase
                     complex [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase regulatory
                     subunit"
                     /protein_id="HFC6157537.1"
                     /translation="METPKLSVEAIEKGTVIDHIPAGRGLTILRQFKLLHYGNAVTVG
                     FNLPSKTQGSKDIIKIKGVCLDDKAADRLALFAPEAVVNTIDNFKVVQKRHLNLPDEI
                     AEVFRCPNTNCAGHGEPVKSRFYVKKHNGQTRLKCHYCEKTYSRDSVAEA"
     gene            4568..5233
                     /locus_tag="ACFM6C_000007"
     CDS             4568..5233
                     /locus_tag="ACFM6C_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157538.1"
                     /translation="MMMHASVQSRFAPILYVLIFFAGFLTAQIWFNQKAYTEELPPLL
                     SALSAVALVWLAWAFVSARSKAKAEKFYREKMIQNESIHPVLHASLQHLEHKPQMLAL
                     LVKNHGKGMAEQVRFKAEVLPDDEDARTIAAELAKMDMFALGTDAVASGETYGRVFAD
                     IFELSAALEGRAFKGMLKLTAEYKNIFGDACRSETALDLGALNQALQEISKTSEKSKR
                     IFY"
     gene            complement(5296..6513)
                     /locus_tag="ACFM6C_000008"
     CDS             complement(5296..6513)
                     /locus_tag="ACFM6C_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HFC6157539.1"
                     /translation="MQRRIITLLCAAGMAFSTQTLAANLEVRPNAPERYTVKQGDTLW
                     GISGKYLYSPWQWSRLWDANRDQIHNPDLIYPDQVLVLRHVDGEPRLGLEQTDGIPVV
                     KMSPDKEVSGYGIPAIDVNFYRIFMRHPQIVSRKETAAAPRLLSGPEGRLLYTKGTRV
                     YTKGLKEPGRYLTYRINKNITDPDTGKFLGQEVAFSGIVRSLDYTDSVLEQRSKQAGE
                     RPKDNEYHTRTHPLITPLRTPSIQPLVVETAISEIQQGDYLMKMPEDTDRFNMMPHEP
                     SRPVQAKIVSVFEGTRIAGQFQTITIDKGEADGLDKGTVLSLYKRKKTMQVDLSNNFK
                     SRDTVELISTPAEEVGLAMVYRTSEHLSSAIILENISDISVGDTAANPGRDLDNIPDQ
                     GRSRVKFGFNRSE"
     gene            6697..7200
                     /gene="def"
                     /locus_tag="ACFM6C_000009"
     CDS             6697..7200
                     /gene="def"
                     /locus_tag="ACFM6C_000009"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HFC6157540.1"
                     /translation="MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRG
                     IGLAATQVDVHERVVVMDLTEDRSEPRVFINPVIVEKDGETTYEEGCLSVPGIYDTVT
                     RAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLK
                     KRQKHTI"
     gene            7287..8213
                     /gene="fmt"
                     /locus_tag="ACFM6C_000010"
     CDS             7287..8213
                     /gene="fmt"
                     /locus_tag="ACFM6C_000010"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0071951 - conversion of methionyl-tRNA to
                     N-formyl-methionyl-tRNA [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HFC6157541.1"
                     /translation="MKVIFAGTPDFAAAALKAVAAAGFEIPLVLTQPDRPKGRGMQLT
                     APPVKQAALELGLRVAQPEKLRNNAEALQMLKEVEADVMVVAAYGLILPQEVLDTPKH
                     GCLNIHASLLPRWRGAAPIQRAIEAGDAETGVCIMQMDIGLDTGDVVSEHRYAIQPTD
                     TANEVHDALMEIGAAAVVADLQQLQSKGRLNAVKQPEEGVTYAQKLSKEEARIDWSKS
                     AAVIERKIRAFNPVPAAWVEYQGKPMKIRRAEVVAQQGAAGEVLSCSADGLVVACGEN
                     ALKITELQPAGGRRMNIAAFAAGRHIEAGTKL"
     gene            8292..9551
                     /gene="rsmB"
                     /locus_tag="ACFM6C_000011"
     CDS             8292..9551
                     /gene="rsmB"
                     /locus_tag="ACFM6C_000011"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HFC6157542.1"
                     /translation="MSMALAQKLAADSIAAVAEGRNLQDVLAQIRTAHPDLTAQENGA
                     LQDIAYGCQRYLGSLKHMLAQMLKKPIGNPQLESLLLAALYQLHYTRNAPHAVVNEAV
                     ESIAKIGRGQYRSFANAVLRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKH
                     WHNITAALQSHPPMTLRVNRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRL
                     PGFSDGIVSVQDFGAQQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDID
                     AGRLKRVEDNIARLGFQTASAACADARDLAAWYDGKPFDAILADVPCTASGVARRNPD
                     VKWLRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHA
                     DAEPIESRVLLPNKHQDGFYYALIQKH"
     gene            9517..10116
                     /locus_tag="ACFM6C_000012"
     CDS             9517..10116
                     /locus_tag="ACFM6C_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4390 domain-containing protein"
                     /protein_id="HFC6157543.1"
                     /translation="MVFITRLFKSIKQWLVLLPMLSVLPDAAAEGIDVSRAEARITDG
                     GQLSISSRFQTELPDQLQQALRRGVPLNFTLSWQLSAPIIASYRFKLGQLIGDDDNID
                     YKLSFHPLTNRYRVTVGAFSTDYDTLDAALRATGAVANWKVLNKGALSGAEAGETKAE
                     IRLTLSTSKLPKPFQINALTSQNWHLDSGWKPLNIIGNK"
     gene            10116..12236
                     /locus_tag="ACFM6C_000013"
     CDS             10116..12236
                     /locus_tag="ACFM6C_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFC6157544.1"
                     /translation="MRRFLPIAAICAVVLLYGLTAATGSTSSLADYFWWIVAFSAMLL
                     LVLSAVLARYVILLLKDRRDGVFGSQIAKRLSGMFTLVAVLPGVFLFGVSAQFINGTI
                     NSWFGNDTHEALERSLNLSKSALNLAADNVLGNAVPVQIDLIGAASLPGDMGRVLEHY
                     AGSGFAQLALYNAASGKIEKSINPHKLDQPFPDKARWEKIQQAGSVRDLESIGGVLYA
                     QGWLSAGTHNGRDYALFFRQPVPKGVAEDAVLIEKARAKYAELSYSKKGLQTFFLATL
                     LIASLLSIFLALVMALYFARRFVEPVLSLAEGAKAVAQGDFSQTRPVLRNDEFGRLTK
                     LFNHMTEQLSIAKEADERNRQREEAARHYLECVLEGLTTGVVVFDEQGCLKTFNKAAE
                     QILGMPLTPLWGSSRHGWHGVSAQQSLLAEVFAAIGAAAGTDKPVHVKYAAPDDAKIL
                     LGKATVLPEDNGNGVVMVIDDITVLIHAQKEAAWGEVAKRLAHEIRNPLTPIQLSAER
                     LAWKLGGKLDEQDAQILTRSTDTIVKQVAALKEMVEAFRNYARSPSLKLENQDLNALI
                     GDVLALYEAGPCRFAAELAGEPLMVAADTTAMRQVLHNIFKNAAEAAEEADVPEVRVK
                     SEAGQDGRIVLTVCDNGKGFGREMLHNAFEPYVTDKPAGTGLGLPVVKKIIEEHGGRI
                     SLSNQDAGGACVRIILPKTVKTYA"
     gene            12229..13506
                     /locus_tag="ACFM6C_000014"
     CDS             12229..13506
                     /locus_tag="ACFM6C_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
                     /protein_id="HFC6157545.1"
                     /translation="MRSSDILIVDDEIGIRDLLSEILQDEGYSVALAENAEEARKLRH
                     QARPAMVLLDIWMPDCDGITLLKEWAKNGQLNMPVVMMSGHASIDTAVEATKIGAIDF
                     LEKPISLQKLLSAVENALKYGAAQTETGPVFDKLGNSAAIQEMNREVGAAVKCASPVL
                     LTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMELLQKAEGGVLYVGDIAQYSR
                     NIQAGIAFIVGKAEHRRVRVVASGSRAAGSDGIACEEKLAELLSESVVRIPPLRMQHE
                     DIPFLIQGIACNVAESQKIAPASFSEEALAALTRYDWPGNFDQLQSVVATLLLEADGQ
                     EIGAGAVSSLLGQNVPAEGAEDMVGGFNFNLPLRELREEVERRYFEYHIAQEGQNMSK
                     VAQKVGLERTHLYRKLKQLGIGVSRRAGEKTEE"
     gene            13597..14784
                     /gene="dprA"
                     /locus_tag="ACFM6C_000015"
     CDS             13597..14784
                     /gene="dprA"
                     /locus_tag="ACFM6C_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HFC6157546.1"
                     /translation="MTEDERFAWLQLAFTPYIGAESFLLLLRRFGSASNALSAPAEQV
                     APAVRHKQAAEAWRNAEKRASARQAAEAALEWEMRDGCRLMLLQDEDFPEMLTQGLTA
                     PPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRTLSGKGIPVVSGMASGIDT
                     AAHQGALQAEGGTIAVWGTGIDRIYPPSNKNLAYEIAEKGLIVSEFPIGTRPYAGNFP
                     RRNRLIAALSQVTLVVEAALESGSLITAGLAAEMGREVMAVPGSIDSPHSKGCHKLIK
                     DGAKLVECLDDILNECPGLLQNTGASSYSINKDTPDTGRRAVQTAYAPPPAAKMPSEA
                     AAGGTAHGGILDKMGFDPVHPDVLAEQLAMPAADLYAALLELELDGSVAAMPGGRYQR
                     IRT"
     gene            14810..15271
                     /locus_tag="ACFM6C_000016"
     CDS             14810..15271
                     /locus_tag="ACFM6C_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF494 family protein"
                     /protein_id="HFC6157547.1"
                     /translation="MTEVIAYLIEHFQDFDTCPPPEDLGMLLEEAGFDTMEIGNTLMM
                     MEVLLNSSEFSAEPADSGALRVYSKEETDNLPQEVMGLMQYLIEEKAVSCEQREIIIH
                     ALMHIPGDEITVDTAKVLTLLLLWANKSELPVLVGDELMSALLLDNKPTMN"
     gene            15343..17649
                     /gene="topA"
                     /locus_tag="ACFM6C_000017"
     CDS             15343..17649
                     /gene="topA"
                     /locus_tag="ACFM6C_000017"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HFC6157548.1"
                     /translation="MAKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAV
                     DPDNGFAMKYQLISRNSKHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKR
                     GLKNIKPQRVVFHEITKNAVLDAVAHPREIEMDLVDAQQARRALDYLVGFNLSPLLWK
                     KIRRGLSAGRVQSPALRLICERENEIRAFEAQEYWTVHLDSHKGRSKFTAKLAQYNGA
                     KLEQFDLSNEAAQADVLKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGF
                     TTDRTMRTAQQLYEGIDVGQGAIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLP
                     SAAKQYKTKSKNAQEAHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTP
                     AKFDQTTVDITVGKGVFRVTGQVQTFAGFLSVYEESSDDEEGEDSKKLPEMSEGDKLP
                     VDKLYGEQHFTTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFM
                     PTDTGDIVNKFLTEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPFIKQVE
                     EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGRFVACAGYPECSYTRNVNETAEE
                     AAERIAKAEAEQAELDGRECPKCGGRLVYKYSRTGSKFIGCTNYPKCKHVEPLEKPKD
                     TGVQCPQCKKGNLVERKSRYGKLFYSCSTYPDCNYATWNPPVAESCPKCAWPVLTIKT
                     TKRWGVEKVCPQKECGWKEQIEPPAPKE"
     gene            complement(17722..18417)
                     /locus_tag="ACFM6C_000018"
     CDS             complement(17722..18417)
                     /locus_tag="ACFM6C_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157549.1"
                     /translation="MMKDLNLSNSLFKGYNDKHGLMICGYEWGWSKADEAAYVAGEYK
                     LPENKIDHTFANKSLYFGEQAKKWRYDNTIKNWFEMWGHPLDENGLGGAFEKSLVQTN
                     WAATQGNTIDNPDKFTQPEHIDNFLYHIEKLRPKVILFMGSRLADFLNNQNVLPRFEQ
                     LVGKQTKPLETVQKEFDGTRFNVKFQSFEDCEVVCFPHPSASRGLSYDYIALFAPEMN
                     RILSDFKTTRGFK"
     gene            complement(18437..18988)
                     /locus_tag="ACFM6C_000019"
     CDS             complement(18437..18988)
                     /locus_tag="ACFM6C_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157550.1"
                     /translation="MEFLSLHPWWSFFIILTIILSYIGFCAHLHIQNRAVFFYSYRDV
                     TIIFLTPVILIALSYLIKNKEILSACILCITLIAFSWAWIITYRSNTKRFFLSLLIVW
                     GKLLLSTIVWAILAISLGLAVITGNSKRKKYERRDRHAERNEKAFIGALLVGFELSRN
                     LLNLCCLHKDFSTPSKNIEVNRS"
     gene            19107..19487
                     /locus_tag="ACFM6C_000020"
     CDS             19107..19487
                     /locus_tag="ACFM6C_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003679508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiprotein-bridging factor 1 family protein"
                     /protein_id="HFC6157551.1"
                     /translation="METHEKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNI
                     PRLEQLAQIFKIDMWDLLKSGGGGMVLQINDVDTNSGEFAIYTAQDASVKLDLLKMEL
                     KHCKEMLEHKDKEIELLRKLTETV"
     gene            19576..20145
                     /gene="rsmD"
                     /locus_tag="ACFM6C_000021"
     CDS             19576..20145
                     /gene="rsmD"
                     /locus_tag="ACFM6C_000021"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052913 - 16S rRNA
                     (guanine(966)-N(2))-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HFC6157552.1"
                     /translation="MAAGKHTKHSNRVRIIGGQCRGRKLSFTSADGLRPTPDSVREKL
                     FNWLGQDLTGKTVLDLFGGSGALGIEAASRNAKRVLISDNNRQTVQTLQKNSRELGLG
                     QVQIVCSDGIAYLKTVSEQFDVVFLDPPFAWQDWQILFDALKPCLNPRSFVYLEAGTL
                     PDIPDWLTEYREGKSGQSTFELRVFQVAE"
     gene            20268..20519
                     /locus_tag="ACFM6C_000022"
     CDS             20268..20519
                     /locus_tag="ACFM6C_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HFC6157553.1"
                     /translation="MSLFITDECINCDVCEPECPNDAISQGEEIYEINPNLCTQCVGH
                     YDEPQCQQVCPVDCILIDEEHPETHDELMAKYEKIIQFK"
     gene            20617..20700
                     /locus_tag="ACFM6C_000023"
     tRNA            20617..20700
                     /locus_tag="ACFM6C_000023"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:20651..20653,aa:Tyr,seq:gta)
     gene            20731..20804
                     /locus_tag="ACFM6C_000024"
     tRNA            20731..20804
                     /locus_tag="ACFM6C_000024"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:20763..20765,aa:Gly,seq:tcc)
     gene            20814..20888
                     /locus_tag="ACFM6C_000025"
     tRNA            20814..20888
                     /locus_tag="ACFM6C_000025"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:20846..20848,aa:Thr,seq:ggt)
     gene            20937..22121
                     /gene="tuf"
                     /locus_tag="ACFM6C_000026"
     CDS             20937..22121
                     /gene="tuf"
                     /locus_tag="ACFM6C_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011793521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HFC6157554.1"
                     /translation="MAKEKFERSKPHVNVGTIGHVDHGKTTLTAALTTILAKKFGGAA
                     KAYDQIDNAPEEKARGITINTSHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVCSAADGPMPQTREHILLARQVGVPYIIVFMNKCDMVDDAELLELVEMEIRDLLSS
                     YDFPGDDCPIVQGSALKALEGDAAYEEKIFELAAALDSYIPTPERAVDKPFLLPIEDV
                     FSISGRGTVVTGRVERGIIHVGDEIEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVG
                     VLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTPFFANYRPQFYFR
                     TTDVTGAVTLEEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSV
                     IA"
     gene            22128..22203
                     /locus_tag="ACFM6C_000027"
     tRNA            22128..22203
                     /locus_tag="ACFM6C_000027"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:22161..22163,aa:Trp,seq:cca)
     gene            22318..22596
                     /gene="secE"
                     /locus_tag="ACFM6C_000028"
     CDS             22318..22596
                     /gene="secE"
                     /locus_tag="ACFM6C_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HFC6157555.1"
                     /translation="MTEHTPEKKNVKVDQLVVQDKESASNSGKEGFFAYFSNSWSEFK
                     KVVWPKREDAVRMTVFVIVFVAVLSIFIYAADTAISWLFFDVLLRREG"
     gene            22598..23134
                     /gene="nusG"
                     /locus_tag="ACFM6C_000029"
     CDS             22598..23134
                     /gene="nusG"
                     /locus_tag="ACFM6C_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HFC6157556.1"
                     /translation="MSKKWYVVQAYSGFEKNVQRILEERIAREEMGDYFGQILVPVEK
                     VVDIRNGRKTISERKSYPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQR
                     EAEIILQQVQTGIEKPKPKVEFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQI
                     FGRETPVELEFSQVEKIN"
     gene            23235..23669
                     /gene="rplK"
                     /locus_tag="ACFM6C_000030"
     CDS             23235..23669
                     /gene="rplK"
                     /locus_tag="ACFM6C_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HFC6157557.1"
                     /translation="MAKKIIGYIKLQIPAGKANPSPPVGPALGQRGLNIMEFCKAFNA
                     ATQGMEPGLPIPVVITAFADKSFTFVMKTPPASILLKKAAGLQKGSSNPLTNKVGKLT
                     RAQLEEIAKTKEPDLTAADLDAAVRTIAGSARSMGLDVEGVV"
     gene            23669..24364
                     /gene="rplA"
                     /locus_tag="ACFM6C_000031"
     CDS             23669..24364
                     /gene="rplA"
                     /locus_tag="ACFM6C_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HFC6157558.1"
                     /translation="MAKVSKRLKALRSSVEANKLYAIDEAIALVKKAATAKFDESVDV
                     SFNLGVDPRKSDQVIRGSVVLPKGTGKTTRVAVFAQGANAEAAKEAGADIVGFEDLAA
                     EIKAGNLNFDVVIASPDAMRIVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
                     VQYRTDKAGIVHATIGRASFAEADLKENFDALLDAIVKAKPAAAKGQYLKKVAVSSTM
                     GLGIRVDTSSVNN"
     gene            24594..25094
                     /gene="rplJ"
                     /locus_tag="ACFM6C_000032"
     CDS             24594..25094
                     /gene="rplJ"
                     /locus_tag="ACFM6C_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HFC6157559.1"
                     /translation="MSLNIETKKVAVEEISAAIANAQTLVVAEYRGISVSSMTELRAN
                     ARKEGVYLRVLKNTLARRAVQGTSFAELADQMVGPLVYAASEDAVAAAKVLHQFAKKD
                     DKIVVKAGSYNGEVMNAAQVAELASIPSREELLSKLLFVMQAPVSGFARGLAALAEKK
                     AGEEAA"
     gene            25152..25523
                     /gene="rplL"
                     /locus_tag="ACFM6C_000033"
     CDS             25152..25523
                     /gene="rplL"
                     /locus_tag="ACFM6C_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HFC6157560.1"
                     /translation="MAITKEDILEAVGSLTVMELNDLVKAFEEKFGVSAAAVAVAGPA
                     GAGAADAEEKTEFDVVLASAGDQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGVS
                     KAEAEDIQKQLEEAGAKVEIK"
     gene            25714..29892
                     /gene="rpoB"
                     /locus_tag="ACFM6C_000034"
     CDS             25714..29892
                     /gene="rpoB"
                     /locus_tag="ACFM6C_000034"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HFC6157561.1"
                     /translation="MSYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENA
                     FDKRTDDGLQAAFNSIFPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRA
                     RIRLVILDKEASKPTVKEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVF
                     FEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALG
                     YNNEQILDIFYDKETFYLSSNGVQTDLVAGRLKGETAKVDILDKEGNVLVAKGKRITA
                     KNIRDITNAGLTRLDVEPESLLGKALAADLIDSETGEVLASANDEITEELLAKFDING
                     VKEITTLYINELDQGAYISNTLRTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNR
                     LFFSEDSYDLSRVGRMKFNTRTYEQKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVE
                     DIVASIATLVELRNGHGEVDDIDHLGNRRVRSVGELTENQFRSGLARVERAVKERLNQ
                     AESENLMPHDLINAKPVSAAIKEFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGLT
                     RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRRVIDG
                     KVTEEIDYLSAIEEGRYVIAQANADLDSDGNLIGDLVTCREKGETIMATPDRVQYMDV
                     ATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPMVGTGIERSVAVDSA
                     TAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVDIYNLVKFTRSNQSTNINQRPAV
                     KAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNGYNYEDSILISEKVAADDRYT
                     SIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVYIGAEVEAGDVLVGKV
                     TPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQVFTREGIQRDKRA
                     QSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPMKLAKGSEITTEYLA
                     GLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKKLTQGDELQPGVQ
                     KMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLNPLGVPS
                     RMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGELREFLNKLYNGSGKKEDLDALTD
                     EEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGFNDSKTQITL
                     YDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQRF
                     GEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESFNVLVK
                     EIRSLGLDIDLERY"
     gene            30049..34224
                     /gene="rpoC"
                     /locus_tag="ACFM6C_000035"
     CDS             30049..34224
                     /gene="rpoC"
                     /locus_tag="ACFM6C_000035"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HFC6157562.1"
                     /translation="MNLLNLFNPLQTAGMEEEFDAIKIGIASPETIRSWSYGEVKKPE
                     TINYRTFKPERDGLFCAKIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLSKVRRE
                     RMGHIELAAPVAHIWFLKSLPSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPLQRRQ
                     LLTEDDYYNKLDEYGDDFDAKMGAEGIRELLRTLNVAGEIEILRQELESTGSDTKIKK
                     IAKRLKVLEAFHRSGMKLEWMIMDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVIN
                     RNNRLKRLLELHAPDIIVRNEKRMLQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIK
                     GKGGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIFHKLEKQGL
                     ASTVKAAKKLVEQEVPEVWDILEEVIREHPIMLNRAPTLHRLGIQAFEPILIEGKAIQ
                     LHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLSPANGEPIIVPSQDI
                     VLGLYYMTRDRINAKGEGSLFADVKEVHRAYHTKQVELGTKITVRLREWVKNEAGEFE
                     PVVNRYETTVGRALLSEILPKGLPFEYVNKALKKKEISKLINASFRLCGLRDTVIFAD
                     HLMYTGFGFAAKGGISIAVDDMEIPKEKAALLAEANAEVKEIEDQYRQGLVTNGERYN
                     KVVDIWGRAGDKIAKAMMDNLSKQKVIDRDGNEVDQESFNSIYMMADSGARGSAAQIK
                     QLSGMRGLMAKPDGSIIETPITSNFREGLTVLQYFIATHGARKGLADTALKTANSGYL
                     TRRLVDVTQDLVVVEDDCGTSDGFVMKAVVQGGDVIEALRDRILGRVTASDVVDPSSG
                     ETLVEAGTLLTEKLVDMIDQSGVDEVKVRTPITCKTRHGLCAHCYGRDLARGKLVNAG
                     EAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSNGTARFSSQMRYVANN
                     KGELVVIGRSCEVVIHDDIGRERERHKVPYGAILLVQDGMAIKAGQTLATWDPHTRPM
                     ITEHAGMVKFENVEEGVTVAKQTDDVTGLSTLVVIDGKRRSSSASKLLRPTVKLLDEN
                     GVEICIPGTSTPVSMAFPVGAVITVREGQEIGKGDVLARIPQASSKTRDITGGLPRVA
                     ELFEARVPKDAGMLAEITGTVSFGKETKGKQRLIVTDVDGVAYETLISKEKQILVHDG
                     QVVNRGETIVDGAVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKISDKHIEVIIRQ
                     MLRRVNIADAGETGFITGEQVERGDVMAANEKALEEGKEPARYENVLLGITKASLSTD
                     SFISAASFQETTRVLTEAAIMGKQDELRGLKENVIVGRLIPAGTGLTYHRSRHQQWQE
                     VEQETAETQVTDE"
     gene            34516..34773
                     /locus_tag="ACFM6C_000036"
     CDS             34516..34773
                     /locus_tag="ACFM6C_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157563.1"
                     /translation="MKPRNLFFAGCLLTSATFAEDIGVPVELINVGNRIAMPSEGESL
                     ALLPFAEDVPPVRDAMPSEVPKSAAGGDVRGDRMGMPINIG"
     gene            34770..34919
                     /locus_tag="ACFM6C_000037"
     CDS             34770..34919
                     /locus_tag="ACFM6C_000037"
                     /inference="COORDINATES: protein motif:HMM:NF016462.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="surface lipoprotein assembly modifier"
                     /protein_id="HFC6157564.1"
                     /translation="MSAALWHKKLSWKGFTPQINFRYNKINSNMPAFYSRSSKEWFVS
                     IEKTY"
     gene            35098..35469
                     /gene="rpsL"
                     /locus_tag="ACFM6C_000038"
     CDS             35098..35469
                     /gene="rpsL"
                     /locus_tag="ACFM6C_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003093744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HFC6157565.1"
                     /translation="MPTINQLVRKGRQKPVYVNKVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCKVRLTNGFEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSL
                     DTAGVKDRKQARSKYGAKRPK"
     gene            35587..36057
                     /gene="rpsG"
                     /locus_tag="ACFM6C_000039"
     CDS             35587..36057
                     /gene="rpsG"
                     /locus_tag="ACFM6C_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008955889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HFC6157566.1"
                     /translation="MPRRREVPKRDVLPDPKFGSVELTKFMNVLMIDGKKSVAERIVY
                     GALEQIEKKTGKVAIEVFNEAIANAKPIVEVKSRRVGGANYQVPVEVRPSRRLALAMR
                     WVRDAARKRGEKSMDLRLAGELIDASEGRGGALKKREEVHRMAEANKAFSHFRF"
     gene            36076..38181
                     /gene="fusA"
                     /locus_tag="ACFM6C_000040"
     CDS             36076..38181
                     /gene="fusA"
                     /locus_tag="ACFM6C_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HFC6157567.1"
                     /translation="MARKTPISLYRNIGISAHIDAGKTTTTERILFYTGLTHKLGEVH
                     DGAATTDYMEQEQERGITITSAAVTSYWSGMAKQFPEHRFNIIDTPGHVDFTVEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYQVPRLAFVNKMDRQGANFFRVVEQMKT
                     RLRANPVPIVIPVGAEDNFSGVVDLLKMKSIIWNEADKGTTFTYGDIPAELVETAEEW
                     RQNMIEAAAEASEELMDKYLGGDELTEEEIVGALRQRTLAGEIQPMLCGSAFKNKGVQ
                     RMLDAVVELLPAPTDIPPVQGVNPNTEEADSRQASDEEKFSALAFKMLNDKYVGQLTF
                     IRVYSGVVKSGDTVLNSVKGTRERIGRLVQMTAADRTEIEEVRAGDIAAAIGLKDVTT
                     GETLCAESAPIILERMEFPEPVIHIAVEPKTKADQEKMGIALNRLAKEDPSFRVRTDE
                     ESGQTIISGMGELHLEIIVDRMKREFGVEANIGAPQVAYRETIRKAVKAEYKHAKQSG
                     GKGQYGHVVIEMEPMEPGGEGYEFIDEIKGGVIPREFIPSVDKGIRDTLPNGIVAGYP
                     VVDVRIRLVFGSYHDVDSSQLAFELAASQAFKEGMRQASPALLEPIMAVEVETPEEYM
                     GDVMGDLNRRRGVVLGMDDDGIGGKKVRAEVPLAEMFGYSTDLRSATQGRATYSMEFK
                     KYSEAPAHIAAAVTEARKG"
     gene            38269..39453
                     /gene="tuf"
                     /locus_tag="ACFM6C_000041"
     CDS             38269..39453
                     /gene="tuf"
                     /locus_tag="ACFM6C_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011793521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HFC6157568.1"
                     /translation="MAKEKFERSKPHVNVGTIGHVDHGKTTLTAALTTILAKKFGGAA
                     KAYDQIDNAPEEKARGITINTSHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVCSAADGPMPQTREHILLARQVGVPYIIVFMNKCDMVDDAELLELVEMEIRDLLSS
                     YDFPGDDCPIVQGSALKALEGDAAYEEKIFELAAALDSYIPTPERAVDKPFLLPIEDV
                     FSISGRGTVVTGRVERGIIHVGDEIEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVG
                     VLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTPFFANYRPQFYFR
                     TTDVTGAVTLEEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSV
                     IA"
     gene            39471..39782
                     /gene="rpsJ"
                     /locus_tag="ACFM6C_000042"
     CDS             39471..39782
                     /gene="rpsJ"
                     /locus_tag="ACFM6C_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012504051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HFC6157569.1"
                     /translation="MANQKIRIRLKAYDYALIDRSAQEIVETAKRTGAVVKGPIPLPT
                     KIERFNILRSPHVNKTSREQLEIRTHLRLMDIVDWTDKTTDALMKLDLPAGVDVEIKV
                     Q"
BASE COUNT        10277 a         9625 c        10564 g         9374 t
ORIGIN      
        1 gtactgtctg cggcttcgtc gccttgtcct gatttttgtt aatccactat ataaaataaa
       61 tgggcaaaaa tcggtttatt atcgtttttg ccgcatttgg atttgttcta ccgtaaaacg
      121 tgtttgacga acgggattct tattaaaaaa catctgattt ctaacaaaat cagtattttt
      181 tggcacgatg gctaaaattt ttccttccat ttcgccatca cgtgttttcc atgcgctcaa
      241 gaattgtgat ttgctcattg agacgtgccc cagcgatgga tcagccagca aaacagtttc
      301 tccgttaata ccgttcaata ccgaaaaatg gttgttttta cggtatttta aatacacaat
      361 tacaggaatt tttagttgta ccaactgttc aaatggcaaa gcataacctt gtgcttcaaa
      421 acccagttcg ggcattatgc gttgcatatc atcaaaagaa gcacgcattt gggttttatc
      481 cattttgtcc aagatttccg cttcagaata atgtctgcca taaaaattat tcagtaacgt
      541 ggcaatcgaa gccgcgccgc aagaaaaatc caaatcttgt tttactatgc cggaatctcg
      601 ccgtgctttc caactccgta catggatgtt ttggtaagaa gcggggtttt cagcaaatat
      661 agggtaagca aaaacaatat ttgggataaa gccaattaaa accgcatggt ttattaattt
      721 agaaatattt tttatcatag tatatatgcg tagaataaac gcatgaaaca taaaaaaata
      781 aaatcatatg caattttatt gcatgaataa atatgaataa aatagataat gatgggagta
      841 aatacgccat gtattttgga agtttaaatt tattaataat aaaataattt atcgtagcgc
      901 aaataaatcc caaaattgga acgattagaa aaaaaattaa tacacccatc atcatgcaaa
      961 ctctatatta ataaatagct aactaattct attgtggaaa ttagttagct aactaaaagt
     1021 tattaatgat tatttccgag aattgactgc attgttggca gcattggccc caaaacctag
     1081 tgcatgaata cccggtctcc atgccaaatt tccagccaat ccgcctccgg cagcagcagc
     1141 cagccctgtt ttgccgctac tcctgttgcc gcaccgattc ctgccgcagt agccgcgcct
     1201 tgcgcagttc ctaatttacc atgattatac aaattagcac catgatactc ccatgcacct
     1261 aatgcaccgc caaaagcagc ggctgcaata atgggaacaa attcaccttg tgtttctttc
     1321 atttcagcct gtgataattg aattgctttc acattttggc tgtcaaaaac ttggctgtct
     1381 aaattttgcg ccattacagg tgtaatcatc atagccatta cagttgcaat tttcgttgcg
     1441 ctggtttgca cataaatagg attagcaaat tcgctttgat tgcgttcagt gttgatgtag
     1501 ctaatactgc tttctagttt gaatttaccc ttgtcagtca ataattcttc caaacttaaa
     1561 ggtaagtcag cataagcaat ttggctggca acagtcaaaa taaaatctat tagacatttg
     1621 tgtttttgca tcatttcgtt tgattttcta gtttttgaga atgatacaaa gtttttttac
     1681 aaagtaaaga gtcactctga aaaacatttt ttcattataa atcaaaatat tgatagaata
     1741 aatagcgagc atcgattcac ggtgtacttt agtgcaaagc gtacaacgcg agcctgaacc
     1801 accagccgca acaggaaaag aaagccgata gagtgcaatg cttgccaacg tgcaagcgag
     1861 cttgcaagaa cgcttggctc aacgagagca ggcaagacag aaagcagaaa gcaggatagg
     1921 agcggtaacg caaaggtctc gggctttgat ttcgccgtaa accctgctgc cgccttgtcc
     1981 ggaaagggtg caggcggcga gtgccgacag ggtgcagatg gggagggggg gtttcatttg
     2041 gggtcgcaac ggaagtggta tgcgcagatt tcaaaaccgt ttttgaaata caggcggtgc
     2101 gcgtcggcac ggtcgtggtt gacgtggacg ttgaggtgga ttttggttac ccctgtttcc
     2161 gcgccgattt tgcggacttc ttccaaaagg cgcgaggcgt agcctttgcg gcggctttgc
     2221 ggcagggtaa cgatgtcatc gatgtggatg tggcggccgc tggcgagggt gcaggcttcg
     2281 cggaagccgc agacggcgac ggcattgtgt ttgccttctt caaaaatacc cagcaggcgg
     2341 tagccttggg ggcgttggac tttgttgatc tgttcggtaa agcggttgat gtcggtcagg
     2401 gcggaacgca aaacgctcaa ggctgcaaag gcggtggcgg tgtcgtccgc gccgatttcg
     2461 cgcaaaacgt aggatgcgcc cgaggcggtc tgttcctgtg ctttctcggc ggcgtgtttt
     2521 tcttcgattg cctgtgccag catgacgtgt tcgtcggcag ggttgttttg tccgccctgt
     2581 tcgcgttctt cgagcagggc tttgcagtcg atgacgcgca ggtcgttgtc ggcggcaaag
     2641 tccatcagga agcggaacat ttgggggttg tcggtttcca gttttttatc gacggcgacg
     2701 cagcggatgt tgtccaccag catggggcgc acccatttcg aataggaaag cctgtggtct
     2761 ttggtgaacg aggacagaat gccgcacagg cgttccgccc agtcgctggg acggaaaatc
     2821 ttgccggaac tcgttgtgcc gtggatgacg acttcgtagg ggttgcagac taacatggcg
     2881 gcttcctgaa aagaaatgtc tggcgcgatt ataccttatg cttatgcggg cgtgtttgga
     2941 tatgccgtct gaaaagtacg ggattcgtgc ggtaaaactt tgcggcggca aatgtgcgat
     3001 aatacgcgcc gtattgccgc ttttgcgaag ctgttccgca aacatacggg cggcgtggac
     3061 gacgtataac cggatacccg cctgacgcgg gttttttacg gaaggggggc aaaaatgcct
     3121 aatccgcttt acagacagca tatcatctcc atttcggatt tgtcgcgcga acagttggaa
     3181 tgcctgcttc agacggcatt gaagctgaag gcgcatccgc gcggcgattt gttggaaggc
     3241 aaacttatcg gttcgtgttt ctttgaaccg tccacgcgca cgaggctgtc gtttgaaacg
     3301 gcggtgcagc ggctgggcgg caaggtcatc ggcttttcgg acggcgcgaa taccagtgcc
     3361 aaaaaaggcg agacgcttgc cgataccgcc cgcatcattt ccggctacac cgacgcaatc
     3421 atccaacgcc accccaaaga cggcgcggcg cgcgtggcag cggagttttc gcgcgtcccc
     3481 gtcatcaacg ccggcgacgg caccaaccag caccccagcc agaccttgtt ggatctggta
     3541 acgatttatg aaacgcaggg gcgtttggac aagctcaaaa tcgccatggc gggcgacttg
     3601 aaatacgggc gcaccgtgca ttcgctttgt caggcgttga aacgctgggg ctgcgaattt
     3661 gcctttgttt cgccgcccag cctcgcgatg cccgactaca ttaccgaaga gttggacgaa
     3721 gccggctgcc gataccgtat cctcggtagt ttggaagaag cggcggaatg ggcggatatc
     3781 ctgtatatga cccgcgtcca gcgcgaacgt ttcgacgaac aggaatttgc caaaatccaa
     3841 ggcaaattca atctcgacgc atccatgctt gcccgcgcca aaccgaacct gcgcgtgctg
     3901 caccctttgc cgcgcgtgga cgaaatccat cccgatgtcg atgctacgcc gcatgcctat
     3961 tatttcgagc aggcgaccaa cggcgtttat gcgcgtatgg cgatattgtc gctggtgttg
     4021 aacgaagaag tgtgaggaac cgatatggaa accccgaaac tcagtgtcga agccattgaa
     4081 aaaggtacgg ttatcgacca tattcccgcc ggcagggggc tgaccatcct gcgccagttc
     4141 aaacttttgc actacggcaa cgcggtaacc gtgggcttca acctgcccag caaaacccaa
     4201 ggcagcaaag acatcatcaa aatcaaaggc gtgtgcttgg acgacaaagc cgccgaccgc
     4261 ctcgccctgt tcgcccccga agcggtggtc aataccatcg acaatttcaa ggtcgtgcag
     4321 aagcggcatt tgaacctgcc cgatgaaatt gccgaagtgt tccgttgccc gaacacgaat
     4381 tgcgccggcc acggcgagcc ggtcaaaagc cggttttatg ttaaaaaaca caacgggcag
     4441 acgcggctga aatgccatta ctgcgaaaaa acctacagcc gggattcggt ggcggaagcc
     4501 tgacggattc ccttaaaccg agcgggcggc atttcgtctg ccgcttgttt tgccaatctg
     4561 aaatggaatg atgatgcacg cttctgtcca aagccgtttc gcaccgatac tttatgtttt
     4621 gattttcttt gccggttttt tgaccgcgca aatttggttc aatcagaaag cctatactga
     4681 agagctgcct ccgcttctgt ccgcattgtc cgccgtcgcg ctggtgtggc tggcgtgggc
     4741 gttcgtgtcg gcgcgttcaa aggctaaggc ggaaaagttc taccgcgaaa aaatgataca
     4801 gaacgaaagc atacaccccg tcctgcacgc ttctttgcaa cacttggaac acaagccgca
     4861 aatgctcgcc ctgctggtca aaaaccacgg caaagggatg gcggaacagg tcaggttcaa
     4921 ggcggaagtg ctgcccgacg acgaagacgc gcgcacgatt gccgccgagt tggcaaaaat
     4981 ggatatgttt gcattgggga cggacgcggt cgcctcgggc gaaacctatg gacgcgtgtt
     5041 cgccgatatt ttcgagttgt cggcggcttt ggaagggcgc gcgttcaaag gaatgttgaa
     5101 actgacggcg gaatataaaa acatcttcgg cgatgcctgc cgttcggaaa cggcgttgga
     5161 tttgggcgcg ctcaatcagg cgttgcagga gatttcaaaa acatcggaaa agtccaaacg
     5221 gatattttat tgaagatgga aaaatgccgt ctgaaacgga aggtgtttca gacggcattt
     5281 ttgtcggatg attaattatt cggagcggtt gaagccaaac ttcacgcggc tgcggccctg
     5341 atccggtata ttgtccaaat cgcgtcccgg attggcggcg gtgtcgccta cggaaatatc
     5401 ggagatgttt tccaaaatga tggcggacga caggtgttcg gaggtgcggt aaaccattgc
     5461 caagcccact tcttcggcag gagtggaaat cagttcgacg gtatccctgc ttttgaaatt
     5521 gttggagagg tcgacctgca tcgttttctt gcgtttgtag aggctcaaaa ccgtgccttt
     5581 gtccaaaccg tccgcctcgc ctttgtcgat ggtgatggtt tgaaactggc cggcaatcct
     5641 tgtgccttca aacacggaaa cgattttagc ctgaaccggg cgggacggtt cgtgcggcat
     5701 catgttgaag cggtcggtgt cttccggcat tttcatcagg tagtcgccct gctgtatttc
     5761 ggaaatggcg gtttcgacca ccagcggctg tatcgaaggg gtgcgcagcg gggtaatcaa
     5821 aggatgggtg cgggtatggt attcgttgtc tttcggccgt tctccagcct gtttcgagcg
     5881 ttgttcgagg acagagtcgg tatagtcgag ggagcgcacg atgccgctga atgcgacttc
     5941 ctgcccgagg aatttacccg tatccggatc ggtgatgttt ttattgattc ggtaggtcag
     6001 gtagcggccc ggctctttca ggcctttggt gtaaaccctg gtgcctttgg tgtacagcag
     6061 cctgccttcc gggcccgaga gcaggcgcgg cgcggcagcg gtttctttgc gggaaacgat
     6121 ttgcggatgc cgcataaaga tgcggtagaa gttgacatcg atggcgggaa taccgtatcc
     6181 ggacacttcc ttatccggac tcattttgac gacggggatg ccgtctgtct gttccaagcc
     6241 gaggcgcggt tcgccgtcaa cgtggcgcaa caccaatacc tggtccggat aaatcaggtc
     6301 gggattgtgg atttgatccc ggttcgcgtc ccacaggcgg ctccattgcc acgggctgta
     6361 caggtatttg cccgaaatgc cccacagggt gtcgccctgt ttgaccgtgt agcgttccgg
     6421 cgcgttcggg cgcacctcca aatttgccgc caaagtttgt gttgagaatg ccatacctgc
     6481 cgcgcagagc agggttataa tacgacgttg cataaccgtt ccccttatct gataaatttc
     6541 ggtttgtctt gcttgattgg gttggaaaaa gcggcggcag cccctcggga tgtgccgcgt
     6601 gataaaaaat gttccgcatt ttaacatcga attatccgca ccatcacggt aattatgaaa
     6661 aacaggcggc gtatccgccg aaggaaagag aaaattatgg ctttattgaa tatcttgcaa
     6721 tatcccgacg agcgtctgca cacggtggca aagcctgtcg aacaagtcga cgagcgcatc
     6781 cggaagctga ttgccgatat gtttgaaacg atgtacgaat cgcgcggcat cgggctggcg
     6841 gcgacgcagg tcgatgtgca cgagcgcgtg gtcgtgatgg atttgaccga agaccgcagc
     6901 gaaccgcgcg tgttcatcaa ccccgtcatc gttgaaaaag acggcgaaac cacttacgaa
     6961 gagggctgcc tgtccgtgcc gggcatttac gacaccgtaa cccgcgccga acgcgtcaag
     7021 gtcgaggctt tgaacgaaaa aggcgaaaag ttcacgctgg aggcggacgg cttgctggcg
     7081 atttgcgtgc agcacgagtt ggaccacctg atgggcatcg tgtttgtcga acgcctgtcg
     7141 cagctcaagc agggacgcat caaaaccaag ctgaaaaaac gtcagaaaca tacgatttga
     7201 cccttttgcc gtgccgtctg aacgctgcaa agttttcaga cggcacggtc ttgtccgaca
     7261 accttacgca tacgcaggaa tatgctatga aagtcatctt tgccggcacg cccgattttg
     7321 ccgccgccgc cttaaaagcc gttgccgccg ccggttttga aatcccgctg gtgctgaccc
     7381 agcccgaccg tccgaaaggg cgcggtatgc aactgaccgc cccgcccgtc aaacaagccg
     7441 cgctggaact cggtttgcgc gtggcacagc ccgaaaaact gcgtaacaac gccgaagccc
     7501 tgcaaatgct caaagaggtc gaggcagacg taatggtggt tgccgcctac ggtttgattc
     7561 tgccgcagga agtgttggat acgccgaaac acggctgcct caacatccac gcttcgctgt
     7621 taccccgttg gcgtggcgcg gcgccgattc aacgcgcgat tgaagccggc gatgccgaga
     7681 caggcgtgtg tattatgcag atggacatcg gtttggacac cggcgatgtg gtcagcgaac
     7741 accgctacgc catccaaccg accgataccg ccaacgaagt ccacgacgcg ctgatggaaa
     7801 tcggtgcggc ggcggttgtt gccgatttgc aacagcttca aagcaaaggc cgtctgaacg
     7861 cggtcaaaca gcccgaagaa ggtgttactt acgcccaaaa actaagcaaa gaagaggcgc
     7921 gtatcgattg gagcaaaagc gcggcggtta tcgaacgcaa aatccgcgcc ttcaaccccg
     7981 tgcctgccgc gtgggttgag tatcagggca agccgatgaa aatccggcgc gccgaagtgg
     8041 tggcgcaaca aggcgcggca ggcgaagtgt tgtcctgttc ggcggacggt ttggtcgttg
     8101 cctgcggcga aaacgcgctg aagattaccg aattgcagcc tgccggcggc aggcggatga
     8161 atatcgcggc gtttgcagca ggacggcata tcgaagcagg gacgaagctg taaatccctt
     8221 cagacggcat tccgatccgc aaacgggaat gccgcctgaa accatcagtc gaagaaagcg
     8281 aatcacataa tatgagtatg gcacttgccc aaaaacttgc cgccgacagc attgcggcgg
     8341 ttgccgaagg acgcaacctt caggacgtgt tggcgcaaat ccgcaccgcg catcccgacc
     8401 ttacggcgca ggaaaacggc gcgttgcagg acatcgccta cggctgccag cgttatttgg
     8461 gcagtttgaa acatatgctc gcgcagatgc tgaaaaagcc gattggcaat ccgcagctcg
     8521 aaagtctgct tttggcggcg ttgtaccaac tgcattacac gcgcaacgcg ccgcatgctg
     8581 tggtcaacga agctgttgaa agcatcgcca aaatcggacg cgggcagtac cgttcgtttg
     8641 ccaacgcggt tttgcgccgc tttttgcgcg aacgcgacaa gcttgcggct tcctgtaaaa
     8701 aagacgatgt ggcgaaacac aacctgccgc tgtggtgggt ggcttacctg aaaaaccatt
     8761 atccgaaaca ctggcacaac atcactgccg cgctgcaatc ccatccgccg atgacgttgc
     8821 gcgtcaaccg ccgacacggc aatgccgaaa gctatttgga aaaactggtg gcggaaggta
     8881 tcgcggctaa ggcgttggac gaatatgcgg ttacgttgga agaagccgtg ccggtaaacc
     8941 gtctgcccgg tttttcagac ggcattgttt cggtacagga cttcggcgcg cagcaggcgg
     9001 cgtatctcct taacccgaaa gacggcgaac ggattttgga cgcgtgcgcc gcgccgggcg
     9061 gcaagacggg gcatattttg gaactggcgg attgccgcgt taccgccttg gacatcgatg
     9121 caggccgtct gaagcgtgtg gaggacaata tcgcccgttt gggctttcag acggcatcgg
     9181 cggcgtgtgc cgatgcgcgg gatttggcgg cgtggtatga tggaaagcct ttcgacgcaa
     9241 tccttgccga cgtgccatgc accgcttccg gcgtggcgcg gcgcaatccc gacgtgaaat
     9301 ggctgcgccg tccgaccgac gcgctaaaaa ccgcccgcca gcaggaagcc ctgctggacg
     9361 cactttggca gacgctgaaa cagggcggca gaatgctgct tgccacctgt tccgtgttcg
     9421 tcgaagaaaa cgacgggcaa ttgcaaaaat tcctcaaccg ccatgccgat gccgaaccga
     9481 tcgaatcgcg ggtgctttta ccgaacaaac accaagatgg tttttattac gcgcttattc
     9541 aaaagcatta aacaatggct tgtgttgctg ccgatgcttt ccgttttgcc ggacgcggcg
     9601 gcggagggga tagatgtgag ccgcgccgaa gcgaggataa ccgacggcgg gcagctttcc
     9661 atcagcagcc gcttccaaac cgagctgccc gaccagctcc aacaggcgtt gcgccggggc
     9721 gtgccgctca actttacctt aagctggcag ctttccgccc cgataatcgc ttcttatcgg
     9781 tttaaattgg ggcaactgat tggcgatgac gacaatattg actacaaact gagtttccat
     9841 ccgctgacca accgctaccg cgttaccgtc ggcgcgtttt cgacagacta cgacaccttg
     9901 gatgcggcat tgcgcgcgac cggcgcggtt gccaactgga aagtcctgaa caaaggcgcg
     9961 ctgtccggtg cggaagcagg ggaaaccaag gcggaaatcc gcctgacgct gtccacttca
    10021 aaactgccca agccttttca aatcaatgca ttgacttctc aaaactggca tttggattcg
    10081 ggttggaaac ctctaaacat catcgggaac aaataatgcg ccgttttcta ccgatcgcag
    10141 ccatatgcgc cgtcgtcctg ttgtacggac tgacggcggc aaccggcagc accagttcgc
    10201 tggcggatta tttctggtgg attgttgcgt tcagcgcaat gctgctgctg gtgttgtccg
    10261 ccgttttggc acgttatgtc atattgctgt tgaaagacag gcgcgacggc gtattcggtt
    10321 cgcagattgc caaacgcctt tccgggatgt ttacgctggt tgccgtactg cccggcgtgt
    10381 ttctgttcgg cgtttccgca cagtttatca acggcacgat taattcgtgg ttcggcaacg
    10441 atacccacga ggcgcttgaa cgcagcctca atttgagcaa gtccgcattg aatttggcgg
    10501 cagacaacgt cctcggcaac gccgtccccg tgcagataga cctcatcggc gcggcttccc
    10561 tgcccgggga tatgggcagg gtgctggaac attacgccgg cagcggtttt gcccagcttg
    10621 ccctgtacaa tgccgcaagc ggcaaaatcg aaaaaagcat caatccgcat aagctcgatc
    10681 agccgtttcc ggataaggcg cgttgggaaa aaatccaaca ggcgggttcg gtcagggatt
    10741 tggaaagcat aggcggcgta ttgtacgcgc agggctggct gtcggcgggt acgcacaacg
    10801 ggcgcgatta cgccttgttt ttccgtcagc cggttcccaa aggcgtggca gaggatgccg
    10861 tcttaatcga aaaggcaagg gcgaaatatg ctgagttgag ttacagcaaa aaaggtttgc
    10921 agaccttttt cctggcaacc ctgctgattg cctcgctgct gtcgattttt cttgcactgg
    10981 tcatggcact gtatttcgcc cgccgtttcg tcgaacccgt cctatcgctt gccgaagggg
    11041 cgaaggcggt ggcgcaaggc gatttcagcc agacgcgccc cgtgttgcgc aacgacgagt
    11101 tcggacgctt gaccaagttg ttcaaccaca tgaccgagca gctttccatc gccaaagaag
    11161 cagacgagcg caaccgccag cgcgaggaag ccgccaggca ttatcttgaa tgcgtgctgg
    11221 aggggctgac cacgggcgtg gtggtgtttg acgaacaagg ctgtctgaaa accttcaaca
    11281 aagcggcgga acagattttg gggatgccgc ttacccccct gtggggcagc agccggcacg
    11341 gttggcacgg cgtttcggcg cagcagtccc tgcttgccga agtgtttgcc gccatcggcg
    11401 cggcggcagg tacggacaaa cctgtccatg tgaaatatgc cgcgccggac gatgccaaaa
    11461 tcctgctggg caaggcaacc gtcctgcccg aagacaacgg caacggcgtg gtaatggtga
    11521 ttgacgacat caccgttttg atacacgcgc aaaaagaagc cgcgtggggc gaagtggcaa
    11581 aacggctggc acacgaaatc cgcaatccgc tcacgcccat ccagctttcc gccgaacggc
    11641 tggcgtggaa attgggcggg aagctggatg agcaggatgc gcaaatcctg acgcgttcga
    11701 ccgacaccat cgtcaaacag gtggcggcat tgaaggaaat ggtcgaagca ttccgcaatt
    11761 atgcgcgttc cccttcgctc aaattggaaa atcaggattt gaacgcctta atcggcgatg
    11821 tgttggcatt gtatgaagcc ggtccgtgcc ggtttgcggc ggagcttgcc ggcgaaccgc
    11881 tgatggtggc ggcggatacg accgccatgc ggcaggtgct gcacaatatt ttcaaaaatg
    11941 ccgccgaagc ggcggaagaa gccgatgtac ccgaagtcag ggtaaaatcg gaagcggggc
    12001 aggacggtcg gattgtcctg acggtttgcg acaacggcaa agggttcggc agggaaatgc
    12061 tgcacaacgc cttcgagccg tatgtaacgg acaaaccggc gggaacggga ttgggtctgc
    12121 ctgtggtgaa aaaaatcatt gaagaacacg gcggccgcat cagcctgagc aatcaggatg
    12181 cgggtggcgc gtgtgtcaga atcatcttgc caaaaacggt aaaaacttat gcgtagcagc
    12241 gatattttaa ttgtagacga cgaaatcggc atccgcgacc tgctgtcgga aatcctgcag
    12301 gacgaaggtt attcggtcgc attggcggaa aacgccgaag aggcgcgcaa gctgcgccat
    12361 caggcgcgcc ccgcgatggt gctgctggat atttggatgc ctgattgcga cggcatcacc
    12421 cttttgaagg agtgggcgaa aaacgggcag ctcaatatgc cggtggtgat gatgagcggg
    12481 catgccagca tcgataccgc cgtggaagcc accaaaatcg gcgcgatcga ttttttggaa
    12541 aaaccgattt ccctgcaaaa gctgctgtct gccgtcgaaa acgcgttgaa gtacggtgcg
    12601 gcgcaaaccg aaacggggcc tgtattcgac aagctgggca acagtgcggc gattcaggaa
    12661 atgaaccgtg aggtaggggc tgcggtgaaa tgtgcctctc ccgtactttt gacgggcgag
    12721 gcgggttcgc cgtttgaaac ggtggcacgc tatttccata aaaacggtac gccgtgggtc
    12781 agcccggcaa gggtcgaata tctgatcgat atgccgatgg aactgttgca gaaggcggag
    12841 ggcggcgttt tgtatgtcgg cgacatcgcc cagtacagcc gcaacatcca agccggtatt
    12901 gcctttattg tcggaaaggc ggaacaccgc cgcgtcaggg tggtcgcatc gggcagcagg
    12961 gcggcaggtt cagacggcat tgcctgcgag gaaaagctgg cggaactgct gtcggaatcg
    13021 gtcgtccgta ttccgccgct gcgtatgcag catgaagaca ttcccttcct gatacagggg
    13081 attgcctgca atgtggcgga aagccaaaag attgcgcctg cctcattcag tgaagaggca
    13141 cttgccgcat tgacccgtta cgactggccg ggaaatttcg accaactgca aagcgtcgtt
    13201 gcaacgctgt tgttggaggc ggacggacag gaaatcggcg caggggcggt ttcttccctt
    13261 ttggggcaga atgtgcctgc cgagggagcg gaagatatgg tgggcgggtt taatttcaac
    13321 ctgcccctgc gcgaattgag ggaggaggtg gagcggcgtt atttcgagta ccacatcgcc
    13381 caagaaggtc agaatatgag caaagtggcg cagaaagtcg gtttggaacg cacgcacctt
    13441 taccgcaaac tcaaacagct cggcatcggc gtttcgcgcc gggcggggga aaaaaccgaa
    13501 gaataggccc ggacggccgg ttttccggct gcgggctttt gttttcagac ggcatttggt
    13561 gcaaatgccg tctgaaatcg taaggggacg gattttatga cagaggacga acgtttcgcg
    13621 tggctgcaat tggcgtttac gccctatatc ggcgcggaaa gcttcctgct gctgctgcgc
    13681 cgtttcggca gcgcgtcaaa cgccctgtcc gcaccggcgg aacaggtcgc cccggcggtg
    13741 cggcacaagc aggcggccga ggcttggcgc aatgcggaaa aacgcgcctc ggcgcggcag
    13801 gcggcagaag cggcgttgga atgggaaatg cgggacggat gccgtctgat gctgcttcag
    13861 gatgaagatt tccccgaaat gctgacgcag gggctgaccg cgccgccggt tttgtttttg
    13921 cgcggcaacg tgcggctgct gcacaagcct tccgccgcca tcgtcggcag ccgccatgcc
    13981 acgccgcagg cgatgcggat tgccaaagat ttcggtagga cgttgtctgg gaaaggcatt
    14041 cccgttgtgt cgggtatggc ttcgggcatc gataccgccg cccatcaggg tgcgttgcag
    14101 gcagaaggcg gcaccatcgc cgtgtggggg acgggcatag accgcattta tccgccgtcc
    14161 aataaaaacc ttgcctatga aatcgccgaa aaagggctga ttgtcagcga gttccccatc
    14221 ggcacgcgcc cgtatgccgg caactttccg cgccgcaacc gcctgattgc cgcgctgtcg
    14281 caggttacgc tggtggttga agctgcgttg gaatccggtt cgctgattac cgccggcctg
    14341 gcggcagaaa tggggcgcga agtgatggcg gtacccggtt cgatagacag tccacacagc
    14401 aaaggctgcc acaaactgat taaagacggc gcaaaattgg tggaatgcct ggacgacatc
    14461 ctgaacgaat gcccggggct attgcaaaat acgggtgctt catcatattc tataaataag
    14521 gatacgcccg acacgggacg ccgcgccgtt cagacggcat acgccccgcc gcctgccgca
    14581 aaaatgccgt ctgaagcggc ggcaggcggc acagcccacg gcggcatact ggataaaatg
    14641 ggtttcgacc ccgtccatcc cgacgtgctt gccgagcagc ttgctatgcc tgccgcagat
    14701 ttgtatgccg cactgttgga attggaattg gacggcagcg ttgccgcaat gcccggcggc
    14761 agataccagc gtatccgaac ttgaacgcac tttatattaa ggaacacgaa tgaccgaagt
    14821 catcgcctac ctcatcgaac atttccaaga tttcgatacc tgtccgccgc ccgaagactt
    14881 gggtatgctg cttgaagaag cgggtttcga tacgatggaa atcggcaaca ccctgatgat
    14941 gatggaagta ttgctcaaca gctccgaatt ttccgccgaa cctgccgaca gcggcgcatt
    15001 gcgcgtgtac agcaaagaag aaaccgacaa cctgccgcag gaagtgatgg ggctgatgca
    15061 gtatctgatt gaagaaaaag ccgtcagctg cgaacagcgg gaaatcatca tccacgcgct
    15121 catgcacatt ccgggcgacg aaattaccgt agataccgcc aaagtgctga ccctgctgct
    15181 tttatgggca aacaagagcg agctgcccgt gttggtcggc gacgagctga tgagcgcgct
    15241 tttactcgac aacaaaccca cgatgaactg aagcggcttc agacggcccg cccgaggccg
    15301 tctgaaacgc cggcatcaaa accaccatcc agagaacgac aaatggcgaa aaacctatta
    15361 atcgtcgaat ccccgtccaa agccaaaacc ctgaaaaaat atttgggcgg cgattttgaa
    15421 atccttgcat cctacggaca cgtccgcgac ctcgtcccca aaagcggcgc ggtcgatccc
    15481 gacaacggct ttgcgatgaa ataccaattg attagccgca acagcaaaca cgtcgatgcc
    15541 atcgttgccg gtgccaaaga agctgaaaac atctacctcg ccaccgaccc ggatagggaa
    15601 ggcgaagcca tttcctggca tcttttggaa atcctcaaat ccaaacgcgg cttgaaaaac
    15661 atcaagccgc agcgtgtcgt gttccacgaa atcaccaaaa acgccgtgct cgatgccgtt
    15721 gcccatccgc gcgaaatcga aatggacttg gtcgatgcac aacaagcccg ccgtgctttg
    15781 gactatttgg tcggctttaa cctttcgcca ttgttatgga aaaaaatccg ccgaggtttg
    15841 agcgcggggc gtgtgcaaag ccctgctttg cgcctgattt gtgagcgcga aaacgaaatc
    15901 cgcgcgtttg aagcgcagga atattggacg gtgcatctcg acagccacaa aggccgcagc
    15961 aagttcaccg ccaaactcgc ccaatacaac ggcgcgaaac tcgaacaatt cgacctgtcg
    16021 aacgaagccg cgcaagccga cgtattgaaa gaactcgaag gcaaagaagc cgtcgttact
    16081 gccattgaaa agaaaaagcg cagccgcaat cctgccgcgc cgttcaccac ttctaccatg
    16141 cagcaggatg ccgtgcgcaa actcggcttc accaccgacc gcaccatgcg taccgcccaa
    16201 cagctttatg aaggtataga cgtagggcag ggcgcgatcg gtctgattac ctatatgcgt
    16261 accgacagcg tgaatttggc ggatgaagcg ttaaccgaaa tccgccatta cattgaaaac
    16321 aaaatcggca aagaatatct gccgagtgcc gccaaacaat acaaaaccaa atccaaaaac
    16381 gcccaagaag cccacgaagc catccgtccg acttccgtgt accgcacgcc cgaaagcgtc
    16441 aaacccttcc tgagcgcaga ccagttcaaa ctctatcaaa tgatttggca gcgtaccgtc
    16501 gcctgtcaga tgacgcctgc caaattcgac caaaccaccg tcgatattac cgtcggcaaa
    16561 ggcgtattcc gcgtaaccgg acaagtgcaa accttcgcag gcttcttgag cgtttatgaa
    16621 gaaagcagcg acgatgaaga aggcgaagac agcaaaaaac tgcccgaaat gagcgaaggc
    16681 gataaattgc ccgtggacaa actctacggc gaacaacact ttaccactcc gccgccgcgc
    16741 tacaacgaag ccacgctggt taaagccctc gaagaatacg gcatcggccg cccctcgacc
    16801 tacgccagca tcatctccac gctcaaagac cgcgaatacg ttacccttga gcaaaaacgc
    16861 ttcatgccca ccgacacagg cgacatcgtc aacaaattcc tgaccgaaca cttcgcccaa
    16921 tacgtcgatt accacttcac cgccaaactc gaagaccagc ttgacgaaat tgccgacggc
    16981 aaacgccaat ggattccctt gatggacaaa ttctggaaac cgttcatcaa acaagtggaa
    17041 gaaaaagaag gcatcgaacg cgccaaattt accacgcagg aacttgatga aacctgcccg
    17101 aaatgcggcg aacacaaact gcaaatcaaa ttcggcaaaa tgggtcgttt tgttgcgtgt
    17161 gccggttatc ccgagtgcag ctacacgcgc aacgtcaacg aaactgccga agaagccgcc
    17221 gagcgcatcg ccaaagccga ggctgaacaa gccgaactcg acggacgcga atgtcctaaa
    17281 tgtggtggtc gcctagtgta caaatacagc cgaaccggca gcaaattcat cggctgcacc
    17341 aactacccca aatgcaaaca cgtcgagccg ctggaaaaac cgaaagatac cggcgtccag
    17401 tgtccgcaat gcaaaaaagg caacctcgtc gagcgcaaat cccgctacgg caaactgttt
    17461 tacagttgca gcacctatcc cgactgtaac tacgccacat ggaacccacc cgttgcagaa
    17521 agctgtccaa aatgcgcatg gccggttttg accatcaaaa ccaccaaacg ctggggtgta
    17581 gaaaaagtct gcccacaaaa agaatgcggc tggaaagaac agattgaacc gcccgcgccg
    17641 aaggagtaag attaggttgg tttgaaagag aaaaggtcgt ctgaaaaatt ttcagacgac
    17701 ctttgctttt ctgtgattgg tttatttgaa tccgcgtgtt gttttaaagt ccgataaaat
    17761 ccggttcatt tcaggcgcaa acaaggcgat gtaatcgtaa gatagaccgc gactggcact
    17821 gggatgggga aagcagacga cttcgcaatc ttcaaacgat tggaatttga cattgaaacg
    17881 tgtaccgtca aattcttttt gcaccgtctc cagcggtttg gtctgcttac cgaccaactg
    17941 ctcgaagcgt ggcagtacat tttggttgtt cagaaaatcc gccaacctgc tgcccatgaa
    18001 gaggatgact ttcggacgca gtttttcgat gtggtagaga aaattatcga tgtgctcggg
    18061 ttgtgtgaac ttgtctggat tgtcgatagt gttgccctgt gtagcagccc agttggtttg
    18121 aaccagggat ttttcaaatg caccgcccaa tccattttcg tctaaggggt gtccccacat
    18181 ttcaaaccaa ttttttatcg tattatcgta acgccacttt tttgcctgct ctccgaaata
    18241 gagggatttg tttgcaaatg tatggtcgat tttgttttca gggagtttgt attcacctgc
    18301 tacataagca gcctcatcgg ctttactcca accccattca tagccacaaa tcattaagcc
    18361 atgtttgtcg ttgtagcctt tgaacaggct gttgctcaaa ttcaaatcct tcatcatgaa
    18421 ctcttccttt taaaatttaa gagcgattga cttcaatgtt tttagatggg gtggaaaaat
    18481 ccttgtgtag gcaacataaa ttcaataaat ttcttgataa ttcgaaacct actaatagcg
    18541 cacctataaa agctttttca ttacgttcag catgacggtc acgtcgttca tattttttac
    18601 gcttgctgtt ccctgttatt acagctaagc caagtgatat ggcgagaatt gcccaaacaa
    18661 ttgtacttaa taacaatttt ccccatacta tcaataagga aagaaaaaac cttttagtat
    18721 tagatcgata ggttataatc catgcccatg aaaatgcaat aagagttata cataagatac
    18781 aagctgacag gatttcttta tttttaatta aataacttag agcgatgagg atgacaggtg
    18841 tcaagaaaat aatagttaca tcccgatagc tataaaagaa aactgcccta ttttgaatgt
    18901 ggagatgtgc acagaatcca atatagctaa ggataatagt taatataata aaaaaagacc
    18961 accaagggtg aagagatagg aattccatgt tttccctttt tttgtaaaaa ggaaaaaatc
    19021 ttatctaata gttaattgcc taaccagcca gaagaagttt aaaatctatc ccaataattc
    19081 aaccatctat acagaaagtt cagcttatgg aaacccacga aaaaatccgc ctgatgcgcg
    19141 aattgaataa atggtcccag gaggatatgg cggaaaagct ggcgatgtcg gcaggcgggt
    19201 atgccaaaat cgaacgaggc gaaacgcagt tgaatatccc gcgtttggag cagttggcgc
    19261 agattttcaa aattgatatg tgggacttgc tcaaatcggg cggcggcggg atggtgttgc
    19321 agattaacga tgtggatacc aacagcgggg aatttgcaat ctataccgct caggatgcat
    19381 cggtaaagct ggatttgtta aaaatggaat taaaacactg taaagaaatg ttggaacaca
    19441 aagacaaaga aatcgagctg ctccgcaagc tgaccgaaac cgtttaaaca gatatgccgt
    19501 ctgaaaaaag ttttcagacg gcatattctt tgacaggtct tgtataatac cgtttgaact
    19561 tacaggtttt tgattatggc ggcaggcaaa cataccaaac acagtaaccg ggtacgcatt
    19621 atcggcgggc aatgccgggg caggaaatta agtttcacat ccgccgacgg actgcgtccg
    19681 acacccgaca gcgtgcgtga aaagctgttt aactggctgg gacaggattt gacgggtaaa
    19741 acggttttgg atctcttcgg aggcagcggc gcactcggta tagaagccgc ttcgcgcaac
    19801 gccaaacgcg tgctgatttc ggataacaac cgccaaaccg tgcagacctt gcagaaaaac
    19861 agtcgcgaac tgggtttggg gcaggtgcaa atcgtctgtt cagacggcat cgcatatttg
    19921 aagaccgtat ccgaacagtt tgatgttgtc tttcttgacc cgccgtttgc atggcaggac
    19981 tggcaaatcc tgtttgatgc cttgaagccg tgcctgaacc cccggtcatt cgtctatctc
    20041 gaggcgggta cgctgccgga tattcccgat tggctgacgg aatatagaga ggggaaatcg
    20101 gggcagagta catttgaatt aagggttttc caagtggctg aataatatgc gctttgataa
    20161 tcatttccga gttgtaaaca ttcgtttgca accgtccggt tcaaaaaaac cttgtgctat
    20221 aatccgcgcc cgcccggttt tgataattta gtggaaaagg aaaagaaatg tcgcttttta
    20281 ttaccgacga gtgcatcaac tgcgacgtat gcgaacccga atgccccaat gatgccatct
    20341 cgcaaggcga ggaaatttac gaaatcaacc ccaacctctg cacgcagtgc gtcggacact
    20401 acgatgaacc gcagtgccag caggtttgcc cggtggactg catcctgatt gacgaagaac
    20461 atcccgaaac gcatgacgag ttgatggcga aatacgaaaa gattatccag tttaaataaa
    20521 ttcttcttta aaacatcaaa ttatgtctgt tttgaaataa aatcaaaaaa aaacttgacg
    20581 gaaaagcaag ccgctaataa actaacgttc tcttttggag ggattcccga gcggtcaaag
    20641 ggggcagact gtaaatctgt tgcgaaagct tcgaaggttc gaatccttct ccctccacca
    20701 aaattcttac ttggggcagt agcgagtaat gcgggtgtag ctcaatggta gagcagaagc
    20761 cttccaagct tacggtgagg gttcgattcc cttcacccgc tccaaacaat taggcccatg
    20821 tagctcaggg gtagagcact cccttggtaa gggagaggtc ggcagttcaa atctgcccat
    20881 gggcaccatc cctcgattat tcatttcttt aaggcttaga tatataggat attgccatgg
    20941 ctaaggaaaa attcgaacgt agcaaaccgc acgtaaacgt tggcaccatc ggtcacgttg
    21001 accatggtaa aaccaccctg actgccgctt tgactactat tttggctaaa aaattcggcg
    21061 gtgctgcaaa agcttacgac caaatcgaca acgcacccga agaaaaagca cgcggtatta
    21121 ccattaacac ctcgcacgtg gaatacgaaa ccgaaacccg ccactacgca cacgtagact
    21181 gcccggggca cgccgactac gttaaaaaca tgattaccgg tgccgcacaa atggacggtg
    21241 caatcttggt atgttccgca gccgacggcc ctatgccgca aacccgcgaa cacatcctgc
    21301 tggcccgcca agtaggcgta ccttacatca tcgtgttcat gaacaaatgc gacatggtcg
    21361 acgatgccga gctgttggaa ctggttgaaa tggaaatccg cgacctgctg tccagctacg
    21421 acttccccgg cgacgactgc ccgatcgtac aaggttccgc actgaaagcc ttggaaggcg
    21481 atgccgctta cgaagagaaa atcttcgaat tggctgctgc attggacagc tacatcccga
    21541 ctcccgagcg tgccgtggac aaacctttct tgttgcctat cgaagacgta ttctctattt
    21601 ccggtcgtgg tacagtagta accggccgtg tagagcgcgg tatcatccac gttggtgacg
    21661 agattgaaat cgtcggtctg aaagaaaccc aaaaaaccac ttgtaccggt gttgaaatgt
    21721 tccgcaaact gctggacgaa ggtcaggcgg gcgacaacgt aggcgtattg ctgcgcggta
    21781 ccaaacgtga agacgtggaa cgcggtcagg tattggccaa accgggtact atcactcctc
    21841 acaccaagtt caaagcagaa gtgtacgtat tgagcaaaga agagggtggc cgccataccc
    21901 cgttcttcgc caactaccgt ccgcaattct acttccgtac caccgacgta accggcgcgg
    21961 ttactttgga agaaggtgtg gaaatggtaa tgccgggtga gaacgtaacc attaccgtag
    22021 aactgattgc gcctatcgct atggaagaag gcctgcgctt tgcgattcgc gaaggcggcc
    22081 gtaccgtggg tgccggcgtg gtttcttctg ttatcgctta agtttagagg ccaatagctc
    22141 aattggtaga gtatcggtct ccaaaaccga gggttggggg ttcgagaccc tcttggcctg
    22201 ccaaataaaa aattaaccgg ccttgtgtcg gttaattttt ttgtatttgt tatttagtaa
    22261 actctcttgc catttacatg gattgagaat agacagatgc tatgatggat aaataatatg
    22321 acagaacata cgcctgaaaa aaagaacgtt aaagtggatc aactggttgt tcaagataaa
    22381 gaatctgcat ctaattccgg taaggaaggg ttttttgcat atttctcaaa ttcttggtcc
    22441 gaattcaaaa aggtggtttg gcctaagcgt gaagatgctg tcagaatgac tgtatttgtt
    22501 atagtgtttg ttgctgtgct ttctatattt atctatgcgg cagatacagc aatttcgtgg
    22561 ttattttttg atgtattgct gagaagggaa ggttgagatg tcgaaaaaat ggtatgttgt
    22621 acaggcgtat tcggggtttg agaagaatgt ccaacgaata ttggaagagc gcattgcccg
    22681 tgaggagatg ggagattatt tcggacaaat tctggtgcct gtagagaaag ttgttgatat
    22741 ccgcaatggt cgtaagacta ttagtgaaag aaagtcatat cctggttatg tgctagttga
    22801 gatggaaatg acagatgact cttggcatct tgtaaaaagc accccccgtg tttccggttt
    22861 tattggaggg agggctaata gacctacgcc gattagtcag agagaggctg aaattatttt
    22921 acagcaggtt cagaccggca tagagaagcc gaaaccaaaa gttgaatttg aggtcggtca
    22981 acaggttcgt gtaaatgaag ggccgtttgc ggattttaac ggggtggttg aggaggtcaa
    23041 ttatgaacgg aataagttac gcgtgtctgt tcagatattt ggtagagaaa cacccgttga
    23101 gctggagttc agccaggttg aaaagattaa ctgattttta tacttgaaaa aaaagcaata
    23161 agaggataga atcaaaaatt aacttgggga gcggaaatgg ttccgcgtct tacccgtttt
    23221 taggagtccg ttaagtggca aagaaaatta tcggctatat taaactgcaa attcctgcag
    23281 gtaaagccaa tccatctcct ccggttggtc ctgctttggg tcagcgcggt ttgaatatta
    23341 tggaattttg taaggcattt aatgctgcaa cccaaggtat ggagcctggc ttaccgattc
    23401 cagttgtgat tactgcattt gcagataaat cattcacatt tgtgatgaaa accccgccag
    23461 cttctatctt gttgaaaaag gctgctggtc tgcaaaaagg tagttctaat cctctgacca
    23521 acaaagtggg taaattgacc cgtgctcagt tggaagaaat tgctaaaact aaagagcctg
    23581 atttgactgc tgctgacttg gatgcggctg tccgtactat agcaggttct gctcgctcaa
    23641 tgggcttgga tgtagagggt gttgtataat ggctaaagta tctaaacgct tgaaagctct
    23701 tcgctcttct gtggaagcca ataaattata tgcaattgat gaagcaattg ctttggtaaa
    23761 aaaagcagcg actgctaaat ttgacgagtc tgttgacgta tctttcaact tgggcgttga
    23821 tccgcgtaaa tctgaccaag ttatccgtgg ttcggtcgtt ctgcctaaag gcaccggtaa
    23881 gacaacccgt gtggctgtat ttgctcaagg tgcaaatgca gaagctgcta aagaagctgg
    23941 tgcagatatc gtcggtttcg aagatttggc tgctgaaatc aaagcaggca atctgaactt
    24001 tgacgttgtt attgcttctc ccgatgcaat gcgtattgtt ggtcaattgg gtaccatctt
    24061 gggccctcgt ggtctgatgc caaaccctaa agtaggtacg gttaccccta atgttgccga
    24121 agcagtaaaa aatgcaaaag caggtcaagt gcagtaccgt accgacaaag caggtattgt
    24181 tcatgcaacg attggtcgtg cttcattcgc tgaagctgat ttgaaagaga actttgatgc
    24241 gttgctggat gctatcgtta aagccaagcc tgctgccgct aaaggtcagt atctgaaaaa
    24301 agttgctgtg tccagcacca tgggtttggg tattcgcgtt gatacatcaa gcgtaaataa
    24361 ctaatcttaa ggaatgttca agcagtttgg ttttctgggc tgcttgaatt tgggctactt
    24421 aaaattaagt agatgtccaa gaccgtaggg atcgtaagat ttaatcgtaa ctgccctacg
    24481 cagacggtag tcctgaaaca cattgcaaga ttgcttgtaa gatgtctttt taggttaccg
    24541 cgctggtggg atatcgtttt ggtatcctgt ttataaacag tgggaggtag accttgagtc
    24601 tcaatattga aaccaagaaa gtggcggtcg aggaaattag cgcggcaatt gctaatgctc
    24661 aaaccctcgt agtcgctgaa tatcgcggta tcagtgtttc cagtatgact gagcttcgtg
    24721 cgaatgcacg taaagaaggc gtttatttgc gcgttctgaa aaatactttg gctcgtcgtg
    24781 cagtgcaagg tacttcattt gcagaattgg ccgatcaaat ggttggtccg ttggtttacg
    24841 ctgcttctga agatgctgtt gctgctgcta aagtgttgca ccaattcgcg aaaaaagatg
    24901 acaaaattgt cgttaaagcc ggttcttaca atggcgaagt aatgaatgct gctcaggttg
    24961 ctgagttggc ttctattccg agccgcgaag agctgttgtc caagctgttg ttcgttatgc
    25021 aagctcctgt atcgggcttt gcgcgcggtt tggctgcttt ggcagagaaa aaagccggcg
    25081 aagaagccgc ttaatcgatt ttgtttctgt taatcaatta ttttttaata caatatttgg
    25141 agtaaaatag catggctatt actaaagaag acattttgga agcagttggt tctttgaccg
    25201 taatggaatt gaacgacttg gttaaagctt ttgaagaaaa atttggtgtt tctgctgctg
    25261 ctgttgcagt tgcaggtcct gctggtgccg gtgctgccga tgctgaagaa aaaaccgaat
    25321 ttgatgtcgt tttggcttct gccggcgatc aaaaagtcgg cgtgattaaa gttgtccgtg
    25381 caattaccgg tttgggtctg aaagaagcta aagacatcgt tgacggcgca cctaaaacca
    25441 ttaaagaggg tgtttctaaa gctgaagccg aagacatcca aaaacaactg gaagaagcag
    25501 gcgctaaagt cgaaatcaaa taatttgatg cttcttatga aggctggcag ttttctgcca
    25561 gccttatttt gcttcttaaa ataaacatca agtattgttt acatttattt gcacagtttt
    25621 tatcaagtca ttgcaaataa atgtaaatat cagattgatg cgtgccgttg ctttcagacg
    25681 gcctattatt gaaaattact tttcggagtg tatatgagct attcgtttac cgagaaaaaa
    25741 cgtatccgta agagttttgc aaagcgggaa aatgttttgg aagttccttt cctgctggca
    25801 acccaaattg attcttatgc gaaatttttg caactggaaa atgcttttga caaacgtacc
    25861 gatgacggtc tgcaggcagc atttaattct attttcccga ttgtgagcca taacggttat
    25921 gcgcgattgg agtttgtgca ttacacattg ggcgagcctt tgttcgatat tcccgaatgt
    25981 cagttgcgcg gaatcactta tgcagccccc ttgcgcgcgc gtatccgttt ggtgattttg
    26041 gataaggaag catctaaacc gacggtaaaa gaagttcgtg aaaacgaagt gtatatgggc
    26101 gaaattccgt tgatgacccc gagcggttct tttgtgatta acggcacaga gcgtgtgatt
    26161 gtttcccagt tgcaccgttc gcccggcgtg tttttcgagc atgacaaagg taagacgcac
    26221 tcttccggca aattgttatt ctccgcccgc atcattccct accgtggttc atggttggat
    26281 tttgaatttg atccgaaaga tttgctgtat ttccgtatcg accgccgccg taaaatgccg
    26341 gtaacgattt tgttgaaggc tttgggctac aacaatgagc aaatcttgga tattttctac
    26401 gacaaagaaa cgttctattt gtcttcaaac ggtgttcaaa ccgatttggt cgcaggccgt
    26461 ctgaaaggcg aaactgccaa ggtcgatatc ttggataaag aaggcaatgt attggttgcc
    26521 aaaggtaagc gcattactgc gaaaaatatc cgtgatatta ccaatgcagg cctgacccgt
    26581 ttggatgtag aaccagaaag cctgctgggc aaagcattgg ctgccgatct gattgattcg
    26641 gaaaccggcg aggtattggc ttctgccaat gatgaaatta cagaagagtt gttggccaaa
    26701 tttgatatca acggcgtaaa agaaattacg accctttaca tcaatgagtt ggatcagggt
    26761 gcttatatct ccaatacctt gcgtacggat gagactgccg gccggcaggc ggctcgtgtt
    26821 gcgatttacc gtatgatgcg tccgggcgaa ccgcccactg aagaggcggt cgagcaattg
    26881 tttaaccgct tgttcttcag tgaagacagc tacgatttgt cccgcgtagg ccgtatgaaa
    26941 tttaatacgc gcacatacga acaaaaactg tccgaagccc aacaaaactc ttggtacggt
    27001 cgcctgctga acgaaacgtt tgccggtgct gccgacaaag gcggttatgt cctgagcgtc
    27061 gaagatattg tcgcctcgat tgcgactttg gtcgagttgc gtaacggcca tggcgaagtg
    27121 gacgatatcg atcacttggg caaccgccga gtacgttcgg taggcgagct gactgaaaac
    27181 caattccgta gcggtttggc ccgtgtggaa cgtgccgtaa aagaacgttt gaatcaggcg
    27241 gaatcagaaa acttgatgcc gcacgatttg attaatgcaa aacctgtttc tgccgctatt
    27301 aaagaattct tcggctccag ccaattgagt cagtttatgg atcagaccaa tcccttgtct
    27361 gaagtaaccc ataaacgccg cgtatccgca ttgggtccgg gcggtttgac ccgcgaacgt
    27421 gcaggatttg aggtgcggga cgtgcatccg acccactacg gtcgcgtatg tccgattgaa
    27481 acgcctgaag gtccgaacat cggtttgatc aactcattgt ccgtttatgc gcgcaccaat
    27541 gattacggtt tcttggaaac gccttaccgc cgcgttatcg acggcaaagt aaccgaggaa
    27601 atcgattact tgtctgccat cgaagaaggc cgctatgtga ttgcacaggc gaatgccgat
    27661 ttggattcag atggcaatct gattggcgat ttggttacct gtcgtgaaaa aggcgaaacc
    27721 attatggcaa cgcccgaccg cgtccaatat atggacgtgg caactggtca agtggtatcc
    27781 gttgcagcat ccctgattcc attcttggaa catgatgacg cgaaccgcgc attgatgggt
    27841 gccaacatgc aacgtcaggc agtgccttgc ttgcgtcctg aaaaaccgat ggtcggtacc
    27901 ggtatcgagc gttccgttgc cgttgactct gctactgcaa tcgttgcccg ccgaggcggc
    27961 gtggtcgagt atgtcgatgc caaccgcgtt gtgatccgtg tccatgacga cgaagcgact
    28021 gccggtgaag tgggtgtcga tatttacaac ttggttaaat tcacccgttc caaccagtct
    28081 accaatatca atcagcgtcc tgccgtcaaa gccggcgatg ttttgcaacg cggcgatttg
    28141 gtggccgacg gcgcgtccac cgatttgggc gaattggctt tgggtcaaaa tatgaccatc
    28201 gccttcatgc cgtggaacgg ttacaactac gaagactcga ttctgatttc cgaaaaagtg
    28261 gctgcggacg accgctatac ttcgattcac attgaggaat tgaatgtcgt tgcccgcgat
    28321 actaagctgg gtgcggaaga cattacccgc gatattccga acttgtccga gcgtatgcaa
    28381 aaccgtttgg acgaatccgg tatcgtttac atcggtgcgg aagtagaagc cggcgatgtg
    28441 ttggtaggca aggtaacgcc taaaggcgaa acccaactga cgccggaaga aaaactgctg
    28501 cgcgccatct tcggtgaaaa agcatctgac gtaaaagata cttcattgcg tatgcctacc
    28561 ggcatgagcg gtaccgttat cgacgttcaa gtcttcactc gtgaaggtat tcaacgcgac
    28621 aaacgcgccc aatccattat cgattccgag ttgaaacgct accgtttgga tttgaacgac
    28681 caattgcgta ttttcgacaa cgacgcattc gaccgtatcg aacgtatgat tgtgggtcaa
    28741 aaagccaatg gtggtccgat gaagctggct aaaggcagcg aaattactac cgaatatttg
    28801 gcgggtctgc cgagcaggca cgattggttc gatatccgtc tgaccgatga agatttggcc
    28861 aagcagttgg aactgattaa agtgagcctg caacaaaaac gcgaagaagc ggacgagtta
    28921 tacgaaatca agaagaaaaa actgacccaa ggcgacgaat tgcaacccgg cgtacaaaaa
    28981 atggtgaaag tttttatcgc catcaaacgc cgtctgcaag ccggcgacaa aatggcgggc
    29041 cgccacggta acaaaggcgt ggtatcgcgc attctgccag tggaagacat gccttacatg
    29101 gcggacggcc gtccggtaga catcgtactg aacccattgg gcgtaccttc ccgtatgaac
    29161 atcggtcaga ttttggaagt tcacttgggt tgggcagcaa aaggtatcgg cgagcgtatc
    29221 gaccgtatgc tgaaagagca acgcaaagca ggcgagttgc gcgagttctt gaacaaactc
    29281 tacaacggca gcggcaagaa agaagatttg gatgccctga ctgatgaaga aatcatcgaa
    29341 ctggcctcca acctgcgtaa aggtgcatct ttcgcctctc ctgtattcga cggtgcgaaa
    29401 gagtctgaaa tccgcgaaat gttgaacttg gcttatccga gcgacgatcc tgaggttgaa
    29461 aaactgggct tcaacgacag taaaacccaa atcacgctgt atgacggccg ttcaggcgaa
    29521 gcatttgacc gcaaggttac agtaggtgtg atgcactatc tgaaactgca ccacttggtt
    29581 gacgaaaaaa tgcacgcgcg ttctaccggt ccgtacagtc tggttaccca gcagcctttg
    29641 ggcggtaaag cccagttcgg cggccaacgt ttcggcgaga tggaggtttg ggcattggaa
    29701 gcatacggcg cggcatacac gctgcaagag atgctgactg tgaagtctga cgacgtgaac
    29761 ggccgtacca aaatgtacga aaacatcgtc aaaggcgaac acaaaatcga tgccggtatg
    29821 cccgagtcct tcaacgtatt ggtcaaagag attcgctcac tgggcttgga tatcgatttg
    29881 gaacgttact aaacaaaagt tttcagacgg cctttcaggg tcgtctgaaa aagtggtttc
    29941 agaataagaa tgaagcaatc ggcatttagg ccgtctgaaa tcaaaagtac cgtttcccaa
    30001 tatcgaaaat ccgccatgcg gtaaaaatac ttccttcaag gagcaaaaat gaatttgttg
    30061 aacttattta atccgttgca aactgccggc atggaagaag agtttgatgc cattaaaatc
    30121 ggtattgcct ctcccgaaac catccgctca tggtcttatg gcgaagtcaa aaaacctgaa
    30181 accatcaact accgtacgtt caaacctgag cgtgacggtt tgttctgtgc caaaatcttt
    30241 ggcccggtca aagactacga atgcttgtgc ggaaaataca aacgcttgaa atttaaaggc
    30301 gtaacgtgtg aaaaatgcgg cgtggaagta accctgtcca aagtgcgccg cgaacgcatg
    30361 ggtcatatcg aattggctgc gcccgtcgca catatttggt tcttaaaatc cctgccttcc
    30421 cgcttgggta tggtgttaga catgactttg cgcgacatcg agcgcgtatt gtactttgaa
    30481 gcatttgtgg taaccgatcc cggtatgact ccgctgcaac gccgccaatt gctgactgaa
    30541 gacgattact acaacaagct ggacgaatac ggcgacgatt tcgatgccaa aatgggtgcg
    30601 gaaggtatcc gcgaattgct gcgtaccctg aatgtagcgg gcgaaatcga aatcctgcgc
    30661 caagagttgg aatcgaccgg ttccgacacc aaaatcaaaa aaatcgccaa acgcttgaaa
    30721 gtattggaag ctttccatcg ttccggtatg aaactggaat ggatgattat ggatgtgctg
    30781 ccggtattgc cgcctgattt gcgtccgttg gttccattgg atggtggtcg ttttgccact
    30841 tccgatttga acgatttgta ccgccgcgtt attaaccgta acaaccgtct gaaacgtctg
    30901 ttggaactgc atgctcctga catcatcgtc cgcaacgaaa aacgtatgtt gcaagaagca
    30961 gttgactcgc tgttggataa cggccgtcgc ggtaaagcca tgaccggcgc caacaaacgc
    31021 ccgctgaaat cattggcaga catgattaaa ggtaagggtg gccgcttccg tcaaaacctg
    31081 ctgggcaaac gtgtggacta ctccggccgt tccgtgatta ccgtaggccc gtacctgcgt
    31141 ctgcaccaat gcggtttgcc gaaaaaaatg gctttggaac tgttcaaacc gttcattttc
    31201 cacaaattgg aaaaacaagg tttggcctct accgttaaag cagcgaaaaa attggtagag
    31261 caagaagtac cggaagtatg ggacatcttg gaagaagtca tccgcgaaca tccgattatg
    31321 ctgaaccgtg cgccgaccct gcaccgtttg ggtattcaag cgttcgaacc tatcttgatt
    31381 gaaggtaaag cgattcagtt gcacccattg gtgtgtgctg cgttcaacgc cgactttgac
    31441 ggcgaccaaa tggcggtaca cgttccattg agcttggaag cacaaatgga agcacgcacg
    31501 ctgatgctgg cttcaaacaa cgtattgtct cctgccaacg gcgaaccgat tatcgtacct
    31561 tcccaagaca tcgtattggg tctgtactac atgacccgcg accgtatcaa tgccaaaggc
    31621 gagggcagcc tgtttgccga tgtgaaagaa gtgcatcgcg cataccatac caaacaggtt
    31681 gaactgggta cgaaaattac cgtacgtctg cgcgaatggg tgaaaaacga agcaggtgag
    31741 tttgagcctg tcgttaaccg ttacgaaaca accgtcggcc gtgcattgtt gagcgaaatc
    31801 ctgccgaaag gcctgccgtt tgaatatgtc aacaaggcat tgaagaaaaa agaaatttct
    31861 aaactgatta acgcatcgtt ccgcctgtgc ggcttgcgcg atacggttat ctttgctgac
    31921 cacctgatgt acaccggttt cggatttgcg gcaaaaggcg gtatttccat tgccgttgac
    31981 gatatggaaa ttccaaaaga aaaagcggcc ttgctggctg aagccaatgc cgaggttaaa
    32041 gaaatcgaag accaataccg tcaaggtttg gttaccaacg gcgaacgcta caacaaagtg
    32101 gtggatattt ggggtcgtgc cggcgataaa atcgctaaag cgatgatgga caacctgtcc
    32161 aaacagaaag ttattgaccg tgacggcaac gaagtcgatc aagagtcatt caactccatc
    32221 tatatgatgg ctgactccgg tgctcgtggt tctgcggctc agatcaaaca gttgtccggt
    32281 atgcgcggtt tgatggcgaa acctgacgga tcgattattg aaacgccgat tacctcaaac
    32341 ttccgcgaag gtctgaccgt attgcaatac tttattgcga cccacggtgc gcgtaagggt
    32401 ttggcggata ccgcattgaa aaccgcgaac tccggttacc tgacccgtcg tctggtagac
    32461 gtaactcaag atttggtcgt tgttgaagac gattgcggta cttcagacgg ctttgttatg
    32521 aaggcagtgg tacaaggcgg tgatgtgatt gaagcattgc gcgatcgtat tttgggccgt
    32581 gttactgcgt ctgacgttgt cgatccgtca agcggcgaga ccttggttga agccggtacg
    32641 ttgttgactg aaaaactggt ggatatgatt gaccaatccg gtgtcgatga agtcaaagtc
    32701 cgtacgccga ttacttgtaa aacccgccac ggtttgtgcg cgcactgtta tggtcgcgac
    32761 ttggcacgtg gtaagctggt caatgccggt gaggcagttg gtgtgattgc cgcccaatca
    32821 atcggcgaac cgggtaccca gctgactatg cgtacgttcc acatcggtgg tgcggcatcc
    32881 cgtgcggcag cagccagcca agtggaagcc aaatccaacg gtacggcacg attcagcagc
    32941 caaatgcgtt atgttgccaa caataaaggc gagttggttg tcatcggccg ttcttgtgaa
    33001 gtcgtgattc acgacgatat cggccgtgaa cgcgaacgcc acaaagtacc ttacggtgcc
    33061 atcctgctgg tacaagacgg tatggccatt aaagccggtc aaaccttggc aacctgggat
    33121 ccgcataccc gtccgatgat taccgaacac gcaggtatgg tgaaattcga aaacgtggaa
    33181 gagggcgtta ccgttgccaa acaaaccgat gatgtaaccg gtttgtccac tttggtggtg
    33241 attgacggta aacgtcgttc ctctagtgct tccaaactgc tgcgtccgac tgtgaaactc
    33301 ttggacgaaa acggcgtgga aatctgtatt cccggtactt ctactccggt atccatggca
    33361 ttccccgttg gtgcggtgat taccgtacgc gaaggtcagg aaatcggtaa aggcgacgta
    33421 ttggcgcgta ttccgcaagc ctcttccaaa acccgcgaca ttaccggcgg tctgccgcgc
    33481 gttgccgaat tgtttgaagc acgcgtgccg aaagatgccg gtatgttggc ggaaattacc
    33541 ggtaccgttt ccttcggcaa agagaccaaa ggcaagcaac gtctgattgt tactgacgtg
    33601 gacggtgtag catacgagac cttgatttcc aaagagaaac aaattctggt acacgacggt
    33661 caagtggtaa accgcggtga aaccatcgtg gacggagctg ttgatccgca tgatattctg
    33721 cgtttgcaag gtatcgaagc actggcacgc tacattgtcc aagaggtgca agaggtttac
    33781 cgtctgcaag gtgtgaagat ttctgataaa cacatcgaag tcatcatccg tcaaatgttg
    33841 cgccgtgtga acattgcgga tgccggcgaa accgggttca ttaccggaga gcaggtcgaa
    33901 cgcggcgatg tgatggctgc caatgaaaaa gcgttggaag aaggcaaaga accggcgcgt
    33961 tacgaaaacg tattgctggg tattaccaaa gcttccctgt ccaccgacag cttcatttct
    34021 gccgcatcgt tccaagaaac cacgcgcgtc ctgaccgaag ccgcgattat gggcaaacaa
    34081 gacgagttgc gtggtttgaa agaaaacgtc atcgtcggtc gcttgattcc tgccggtacc
    34141 ggtttgactt accaccgcag ccgtcatcaa caatggcaag aggtggaaca ggagactgct
    34201 gaaacccaag taacggatga ataatctttg gtgcgtttat tcaatacaaa accgcaagct
    34261 ttaagcttgc ggtttttctt tgtctgatta aggcaaaaac aagcgttttc gtcattttga
    34321 ggcgtgtgga ttattcctta ggtattttcg ggccggagac caacgaggtg gcgggtgtcg
    34381 tcggtacgtc cggagaccaa aataactttg ccagggatgt tggtttcggc ggtcaaaaaa
    34441 agtagcgtct taatgttttc catttaaaca aatgtcgtct gaaacttcag acggcatttc
    34501 ctttaaaaaa taaatatgaa acccagaaat ctcttttttg caggctgcct gctgacttcg
    34561 gcgacgtttg ccgaggatat cggcgtacct gtcgaactga ttaacgtcgg taatcggatt
    34621 gcgatgccgt ctgaagggga aagcctcgcc ctcctgccgt ttgccgagga tgtaccgccg
    34681 gttcgcgatg caatgccgtc tgaagttcct aaaagcgcgg caggcggcga tgttcggggt
    34741 gaccggatgg gaatgccgat taacatcgga tgagcgcggc tttatggcat aaaaaactgt
    34801 cgtggaaagg atttacaccc caaataaatt tccgttacaa caagatcaac agcaatatgc
    34861 ccgcctttta ttcgcgcagc agcaaggaat ggtttgtcag tatagaaaaa acgtattgac
    34921 agtattttct ccagccgtcc gactgattgt gagggatgtc ggtaaatatt tatcggcaaa
    34981 caagaaaatc atctttcttc ttgtcgttat gcttgactgt atacttgcaa taaaaatata
    35041 attccactct tgccgacatg gtgtcggcaa gtatttaact caacaggacg agaaaatatg
    35101 ccaactatca accaattggt acgcaaaggc cgtcaaaagc ccgtgtacgt aaacaaagtg
    35161 cccgcactgg aagcctgccc gcaaaaacgc ggcgtgtgca cccgtgtata cacgactacc
    35221 cctaaaaaac ctaactctgc attgcgtaaa gtatgtaaag tccgcctgac caacggtttt
    35281 gaagtcattt catacatcgg cggcgaaggc cacaacctgc aagagcacag tgtcgtattg
    35341 attcgcggcg gtcgtgtaaa agacttgcca ggtgtgcgtt accacactgt acgcggttct
    35401 ttggatactg caggtgttaa agaccgtaaa caagcccgtt ccaaatacgg tgctaagcgt
    35461 cctaaataat tactgggact taaataggca cgtcggccgc ctaagctgaa caacggccga
    35521 gtaagtgaat actcaattgg gtattcatgg gaatagaccc gactgaatag attaaaggaa
    35581 attaaaatgc caagacgtag agaagtcccc aagcgcgacg tactgccaga tcctaaattc
    35641 ggcagcgtcg agttgaccaa attcatgaac gtattgatga ttgacggtaa aaaatccgtt
    35701 gccgagcgta tcgtttacgg tgcgttggaa cagattgaga aaaaaaccgg caaagtagca
    35761 atcgaagtat ttaacgaagc cattgcaaac gccaaaccta tcgtggaagt gaaaagccgc
    35821 cgtgtaggtg gtgcaaacta ccaagttcct gttgaagttc gtccttcacg ccgtttggct
    35881 ttggcaatgc gctgggttcg cgatgcggcc cgcaaacgtg gtgagaaatc catggacctg
    35941 cgtttggcag gcgaattgat tgatgcgtcc gaaggccgtg gcggtgcgtt gaaaaaacgt
    36001 gaagaagtac accgtatggc tgaagccaac aaagcattct ctcacttccg tttctaattt
    36061 tgaaaggcta ataaaatggc tcgtaagacc ccgatcagcc tgtaccgtaa catcggtatt
    36121 tccgcccata tcgatgcggg taaaaccacg acgacagaac gtattttgtt ctatactggt
    36181 ttgacccaca agctgggcga agtgcatgac ggtgcggcta ctaccgacta catggaacaa
    36241 gagcaagagc gcggtattac cattacctcc gctgccgtta cttcctactg gtccggtatg
    36301 gcgaaacaat tccccgagca ccgcttcaac atcatcgaca ccccgggaca cgttgacttt
    36361 accgtagagg tagagcgttc tatgcgtgta ttggacggcg cggtaatggt ttactgcgcg
    36421 gtgggcggtg ttcaacccca atctgaaacc gtatggcggc aagccaacaa ataccaagtg
    36481 ccgcgcttgg cgtttgtcaa taaaatggac cgtcagggtg ccaacttctt ccgcgttgtc
    36541 gagcaaatga aaacccgttt gcgcgcaaac cctgtaccta tcgtcattcc ggttggtgcg
    36601 gaagacaact tcagcggtgt ggttgatttg ttgaaaatga aatccatcat ttggaatgaa
    36661 gccgataaag gtacaacctt tacctatggc gatattcctg ccgaattggt cgaaactgcc
    36721 gaagaatggc gtcaaaatat gattgaagcc gcagccgaag ccagcgaaga actgatggac
    36781 aaatacttag gcggcgacga gctgaccgaa gaagaaatcg taggcgcgtt gcgtcaacgt
    36841 actttggcag gcgaaattca gcctatgctg tgtggttctg catttaaaaa caaaggtgtt
    36901 caacgtatgt tggacgcagt tgtagaattg ctgccagctc ctaccgatat tcctccggtt
    36961 caaggtgtca acccgaatac cgaggaagcc gacagccgtc aagccagcga tgaagagaaa
    37021 ttctctgcat tggcgttcaa aatgttgaac gacaaatacg tcggtcagct gacctttata
    37081 cgcgtttact caggcgtagt aaaatccggc gataccgtat tgaactccgt aaaaggcact
    37141 cgcgaacgta tcggtcgttt ggtacaaatg actgccgcag accgtactga aatcgaagaa
    37201 gtacgcgccg gcgacatcgc agccgctatt ggtctgaaag acgttactac cggtgaaacc
    37261 ttgtgtgcgg aaagcgcgcc gattatcttg gaacgcatgg aattccccga gccggtaatc
    37321 catattgccg ttgagccgaa aaccaaagcc gaccaagaga aaatgggtat cgccctgaac
    37381 cgcttggcta aagaagaccc ttctttccgt gtccgtacag acgaagaatc cggtcaaacc
    37441 attatttccg gtatgggtga gctgcacttg gaaattattg ttgaccgtat gaaacgcgaa
    37501 ttcggtgtgg aagcaaatat cggtgcacct caagtggctt accgtgaaac tatccgcaaa
    37561 gccgttaaag ctgaatacaa acacgcgaaa caatccggtg gtaaaggtca atatggtcac
    37621 gttgtgattg aaatggaacc tatggaaccg gggggcgaag gttacgagtt tatcgatgaa
    37681 attaaaggtg gcgtgattcc tcgtgaattc attccgtctg tcgataaagg tatccgcgat
    37741 acattgccta acggtatcgt tgccggctat cctgtagttg acgtacgtat ccgtttggta
    37801 ttcggttctt accatgatgt cgactcttcc caattggcat ttgaattggc tgcttctcaa
    37861 gcgtttaaag aaggtatgcg tcaagcatct cccgccctgc ttgagccgat tatggcagtt
    37921 gaagtggaaa ccccggaaga atacatgggc gacgtaatgg gcgacttgaa ccgccgtcgc
    37981 ggtgttgtat tgggtatgga tgatgacggt atcggcggta aaaaagtccg tgccgaagta
    38041 cctctggcag aaatgttcgg ttattcgacc gacctgcgtt ctgcaaccca aggccgcgct
    38101 acttactcta tggagttcaa gaaatattct gaagctcctg cccacatagc tgctgctgta
    38161 actgaagccc gtaaaggcta atcaggcaaa taggtcgtct gaaaggctga aatgattttt
    38221 cagacggcat tgttctttaa tcgatcttta atgtaaagga attagctcat ggctaaggaa
    38281 aaattcgaac gtagcaaacc gcacgtaaac gttggcacca tcggtcacgt tgaccatggt
    38341 aaaaccaccc tgactgccgc tttgactact attttggcta aaaaattcgg cggtgctgca
    38401 aaagcttacg accaaatcga caacgcaccc gaagaaaaag cacgcggtat taccattaac
    38461 acctcgcacg tagaatacga aaccgaaacc cgccactacg cacacgtaga ctgcccgggc
    38521 cacgccgact acgttaaaaa catgattacc ggcgccgcac aaatggacgg tgcaatcctg
    38581 gtatgttccg ctgctgacgg ccctatgccg caaacccgcg aacacatcct gctggctcgc
    38641 caagtaggcg taccttacat tatcgtgttc atgaacaaat gcgacatggt cgacgatgcc
    38701 gagctgttgg aactggttga aatggaaatc cgcgacctgc tgtccagcta cgacttcccc
    38761 ggcgatgact gcccgattgt acaaggttcc gcactgaaag ccttggaagg cgatgccgct
    38821 tacgaagaaa aaatcttcga actggctgcc gcattggaca gctacatccc gactcccgag
    38881 cgtgccgtgg acaaaccgtt cctgctgcct atcgaagacg tgttctccat ttccggccgc
    38941 ggtacagtag taaccggccg tgtagagcgc ggtatcatcc acgttggtga cgagattgaa
    39001 atcgtcggtc tgaaagaaac ccaaaaaacc acctgtaccg gtgttgaaat gttccgcaaa
    39061 ctgctggacg aaggtcaggc gggcgacaac gtaggcgtat tgctgcgcgg taccaaacgt
    39121 gaagacgtgg aacgcggtca ggtattggct aaaccgggta ctatcactcc tcacaccaaa
    39181 ttcaaagcag aagtatacgt actgagcaaa gaagagggtg gtcgtcacac tccgttcttc
    39241 gccaactacc gtccgcaatt ctacttccgt accaccgacg taaccggcgc ggttactttg
    39301 gaagaaggtg tggaaatggt aatgccgggt gaaaacgtaa ccatcaccgt agaactgatt
    39361 gcgcctatcg ctatggaaga aggcctgcgc tttgcgattc gcgaaggcgg ccgtaccgtg
    39421 ggtgccggcg tggtttcttc tgttatcgct taattgaagg atattgataa atggcaaacc
    39481 aaaaaatccg tatccgcctg aaagcttatg attacgccct gattgaccgt tctgcacaag
    39541 aaatcgttga aactgcaaaa cgtaccggtg cagttgtaaa aggcccgatt cctttgccga
    39601 ccaaaatcga gcgtttcaac attttgcgtt ctccgcacgt gaacaaaact tcccgtgagc
    39661 aattggaaat ccgcacccac ttgcgcctga tggacatcgt ggattggacc gataaaacta
    39721 ccgatgcgct gatgaagctg gatttgccgg ccggtgttga tgtagaaatc aaagtccaat
    39781 aattcggact attgaaaatc cccaagcaat caatgcttgg ggatttttta tgttatgccg
//
LOCUS       DAXHPV010000002        31976 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.002, whole genome shotgun sequence.
ACCESSION   DAXHPV010000002 DAXHPV010000000
VERSION     DAXHPV010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 31976)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31976)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31976
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.002"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..212)
                     /locus_tag="ACFM6C_000043"
     CDS             complement(<1..212)
                     /locus_tag="ACFM6C_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RTX iron-regulated FrpC family protein"
                     /protein_id="HFC6157570.1"
                     /translation="MRPYATTIYQLFILFIGSVFTMTSCKPVNEQTSFNNPEPMTGFE
                     HTVTFDFQGTKMVIPYGYLARYTQDNA"
     gene            complement(600..875)
                     /locus_tag="ACFM6C_000044"
     CDS             complement(600..875)
                     /locus_tag="ACFM6C_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HFC6157571.1"
                     /translation="MNASNWSVYLILCENSAFYCGISPNPQQRLAAHTAGKGAKYTRV
                     FKPVAMRIVAGGMDKGTALKQEIAVKKLTAAQKRKLWEQAEKMPSET"
     gene            complement(872..2155)
                     /locus_tag="ACFM6C_000045"
     CDS             complement(872..2155)
                     /locus_tag="ACFM6C_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFC6157572.1"
                     /translation="MTVSKSGFIGQIFSRNMLVCIFTGFTSGLPLYFLINLIPAWLRS
                     EQVDLKSIGLMALIGLPFTWKFLWSPLMDAVRLPVLGRRRGWMLLTQAGLLAALAAYA
                     FLNPRNHLPLIAGLSVLVAFFSASQDIVLDAFRREILSDEELGLGNSVHVNAYRVAAL
                     IPGSLSLVLADRMPWTEVFVITSLFMLPGLLMTLFLAREPVLPLAVSKTLKQTVVEPF
                     KEFFTRKGIASAVCVLLFIFLYKLGDSMATALATPFYLDMGFSKTDIGLIAKNAGLWP
                     AVAAGILGGMWMLKIGVNKALWLFGAVQAITVLGFVWLAGFGHFDTVGTSERLMLAAV
                     IGAEAVGVGLGTAAFVSYMARETNPAFTATQLALFTSLSAVPRTVINSFAGYLIEWLG
                     YVPFFRLCFILALPGMLLLLKVAPWNGEKTRDAGR"
     gene            complement(2305..3723)
                     /gene="glnA"
                     /locus_tag="ACFM6C_000046"
     CDS             complement(2305..3723)
                     /gene="glnA"
                     /locus_tag="ACFM6C_000046"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HFC6157573.1"
                     /translation="MSIKNAVKLIEESEARFVDLRFTDTKGKQHHFTVPARIVLEDPE
                     EWFENGQAFDGSSIGGWKGIQASDMQLRPDASTAFVDPFYDDVTVVITCDVIDPADGQ
                     GYDRDPRSIARRAEAYLKSSGIGDTAYFGPEPEFFVFDGVEFETDMHKTRYEITSESG
                     AWASGLHMDGQNTGHRPAVKGGYAPVAPIDCGQDLRSAMVNILEELGIEVEVHHSEVG
                     TGSQMEIGTRFATLVKRADQTQDMKYVIQNVAHNFGKTATFMPKPIMGDNGSGMHVHQ
                     SIWKDGQNLFAGDGYAGLSDTALYYIGGIIKHAKALNAITNPSTNSYKRLVPHFEAPT
                     KLAYSAKNRSASIRIPSVNSSKARRIEARFPDPTANPYLAFAALLMAGLDGIQNKIHP
                     GDPADKNLYDLPPEEDALVPTVCASLEEALAALKADHEFLLRGGVFSKDWIDSYIAFK
                     EEDVRRIRMAPHPLEFEMYYSL"
     gene            3748..3957
                     /locus_tag="ACFM6C_000047"
     CDS             3748..3957
                     /locus_tag="ACFM6C_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157574.1"
                     /translation="MAKYAERGGLTQSRHDFTTPMPSETGFASNFKPENIVSDGKIVN
                     NMLRFVCSKAECPPFCPNADKTDAV"
     gene            4035..4844
                     /gene="aroE"
                     /locus_tag="ACFM6C_000048"
     CDS             4035..4844
                     /gene="aroE"
                     /locus_tag="ACFM6C_000048"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_process: GO:0019632 - shikimate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HFC6157575.1"
                     /translation="MHALPRYAVFGNPVAHSKSPQIHRQFALQEGVEIEYGRICADIG
                     SFAQAVLTFFGTGGCGANVTVPFKQEAFDLADEHSERASAAGAVNTLILLKNGKLRGD
                     NTDGLGLVGDIVKVQHTEIEGKNILLLGAGGAVRGVIPVLLAQNPARIVIANRTRAKA
                     EEVAARFGIEAVSPDSLAGGFDIIVNGTSGGLSGQIPDIPPDIFQNCALAYDMVYGEA
                     AKPFLDFARQSGAKQTADGLGMLVGQAAASYALWRGFKPDIRPVIEYMKAL"
     gene            4846..5547
                     /gene="mtgA"
                     /locus_tag="ACFM6C_000049"
     CDS             4846..5547
                     /gene="mtgA"
                     /locus_tag="ACFM6C_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009274 - peptidoglycan-based cell wall
                     [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016763 - pentosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HFC6157576.1"
                     /translation="MFRIVKWLIALPVGIFIFFNAYVYGNIITYRAVAPHRTAFMSMR
                     MKQFEQEGRDVPLDYRWMPYNRISVNLKKALIASEDARFAGHGGFDWGGIQNAIRRNR
                     NSGEVKAGGSTISQQLAKNLFLNESRSYIRKGEEAAITAMMEAVTDKDRIFELYLNSI
                     EWHYGVFGAEAASRYFYQIPAAKLSKQQAAKLTARVPAPLYYADHPKSKRLRNKTNIV
                     LKRMGSAELPEDDTD"
     gene            complement(5749..5824)
                     /locus_tag="ACFM6C_000050"
     tRNA            complement(5749..5824)
                     /locus_tag="ACFM6C_000050"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5789..5791),aa:Phe,seq:gaa)
     gene            complement(6015..6749)
                     /gene="lptB"
                     /locus_tag="ACFM6C_000051"
     CDS             complement(6015..6749)
                     /gene="lptB"
                     /locus_tag="ACFM6C_000051"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HFC6157577.1"
                     /translation="MSANVSRLVVQNLQKSFKKRQVVKSFSLEIESGEVVGLLGPNGA
                     GKTTSFYMIVGLIAADAGSVMLDGQELRHLPIHERARLGVGYLPQEASIFRKMTVEQN
                     IRAILEISTKDKSRIDGEVEKLLADLNIERLRNNPAPSLSGGERRRVEIARVLAMKPH
                     FILLDEPFAGVDPIAVIDIQKIIGFLKSRGIGVLITDHNVRETLSICDRAYIISDGTV
                     LASGKPDDLVGNEQVRSVYLGENFKY"
     gene            complement(6823..7353)
                     /gene="lptA"
                     /locus_tag="ACFM6C_000052"
     CDS             complement(6823..7353)
                     /gene="lptA"
                     /locus_tag="ACFM6C_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0001530 - lipopolysaccharide binding
                     [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HFC6157578.1"
                     /translation="MIQKICKLFVLIAFFSASPAFALQGDSRQPIQIEADQGSLNQAN
                     QSTTFSGNVVIRQGTLNISAARVNVTRNDKGEQFMKADGSPVRFSQTLDGGKGTVRGQ
                     ANNVAYSSAGSTVVLTGNAKVQRGGDVAEGAVITYNTKTEVYTISGSTKSGAKSASKS
                     GRVSVIIQPSSTQKSE"
     gene            complement(7334..7915)
                     /gene="lptC"
                     /locus_tag="ACFM6C_000053"
     CDS             complement(7334..7915)
                     /gene="lptC"
                     /locus_tag="ACFM6C_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HFC6157579.1"
                     /translation="MKIRWRYGIAFPLILAVALGSLSAWLGRISEVEIEEVRLNPDEP
                     QYTMDGLDGRRFDEQGYLKEHLSAKGAKQFPESSDIHFDSPHLVFFQEGRLLYEVGSD
                     EAVYHTENKQVLFKNNVVLTKTADGKRQAGKVKTEKLHVDTESQYAQTDTPVSFQYGA
                     SHGQAGGMTYDHKTGLLNFSSKVKATIYDTKDM"
     gene            complement(7912..8448)
                     /locus_tag="ACFM6C_000054"
     CDS             complement(7912..8448)
                     /locus_tag="ACFM6C_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KdsC family phosphatase"
                     /protein_id="HFC6157580.1"
                     /translation="MQAISPELQARAAKIKLLILDVDGVLTDGRIFIRDNGEEIKSFH
                     TLDGHGLKMLQASGVQTAIITGRDAPSVGIRVKQLGINYYFKGISDKRAAYEELRAQV
                     GVEEAECAFVGDDVVDLPVMVRCGLPVAVPDAHWFTLQHAAYIAKRPCGAGAVREVCD
                     LIMQAQGTLGAALNEYIK"
     gene            complement(8621..9595)
                     /locus_tag="ACFM6C_000055"
     CDS             complement(8621..9595)
                     /locus_tag="ACFM6C_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HFC6157581.1"
                     /translation="MAENGKYLDWAREVLHTEAEGLREIAAELDENFVLAADALLHCK
                     GRVVITGMGKSGHIGRKMAATMASTGTPAFFVHPAEAAHGDLGMIVDNDVVVAISNSG
                     ESDEIAAIIPALKRKDITLVCITARPDSTMARHADIHITASVSKEACPLGLAPTTSTT
                     AVMALGDALAVVLLRARAFTPDDFALSHPAGSLGKRLLLRVADIMHKGGGLPAVRLGT
                     PLKEAIVSMSEKGLGMLAVTDGQGRLKGVFTDGDLRRLFQECDNFTGLSIDEVMHTHP
                     KTISAERLATEALKVMQANHVNGLLVTDADGVLIGALNMHDLLAARIV"
     gene            9691..10746
                     /gene="tal"
                     /locus_tag="ACFM6C_000056"
     CDS             9691..10746
                     /gene="tal"
                     /locus_tag="ACFM6C_000056"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004801 - transaldolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HFC6157582.1"
                     /translation="MTILSDVKALGQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNP
                     AIFQKAFAGDALYADEIAALKQQNLSPKQRYETMAVADVRAACGVCLAEHESTGGKTG
                     FVSLEVSPELSKDAQGTVEEARRLYAAIGCKNAMIKVPATDAGIDALEILVSDGISVN
                     LTLLFSRAQTLKAYAAYARGIAKRLAAGQSVAHIHVVASFFISRVDGALDTTLPDHLK
                     GKIAIALAKTAYQDWEQYFTAPKFAALEAQGANRVQLLWASTGVKNPAYPDTLYVDSL
                     IGAHTVNTVPDATLKAFIDHGTAKATLTEGVDEARARLAEIAALGIDVETLAARLQED
                     GLKQFEEAFEKLLAPLV"
     gene            10888..11178
                     /locus_tag="ACFM6C_000057"
     CDS             10888..11178
                     /locus_tag="ACFM6C_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157583.1"
                     /translation="MAKALEIISPNEIYSDLIFKDPVPPHTIYTELMKLIGRNASNER
                     IADRAFDFFSSGLMDGSATEEQYNALYDLTLLEEPGMELNKDEIMALIHSLK"
     gene            11195..12082
                     /gene="gluQRS"
                     /locus_tag="ACFM6C_000058"
     CDS             11195..12082
                     /gene="gluQRS"
                     /locus_tag="ACFM6C_000058"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HFC6157584.1"
                     /translation="MYTGRFAPSPTGLLHIGSLLTAAASYADARSNGGKWLVRMEDLD
                     PPREMPGAASHILHTLEAFGFEWDGEVAYQSHRYALYEETLCRLQTAGLVYPCHCSRK
                     DWQAGARRGADGFVYNGRCRHPGQRPAPQGKQPAWRIRVPDRIIGFSDGIVGGYAQNL
                     ARDIGDFVLLRADGYWAYQLAVVADDAEQGVTHIVRGQDLLVSTPRQIYLQQCLGVPT
                     PQYAHLPLLTNAQGQKWSKQTLAPALDLNRREQLLRQVFRYLKLPEAPETDRPAELLD
                     WAVAHWDMDKVPKHAITTP"
     gene            complement(12150..13160)
                     /gene="dusA"
                     /locus_tag="ACFM6C_000059"
     CDS             complement(12150..13160)
                     /gene="dusA"
                     /locus_tag="ACFM6C_000059"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0002943 - tRNA dihydrouridine synthesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HFC6157585.1"
                     /translation="MNDNTQTLPPRRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMV
                     NAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPS
                     PRVQKGSFGACLMNEVGLVADCLNAMQDAVKIPVTVKHRIGVDRQTEYQTVADFVGTL
                     RDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTN
                     EAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDTRSPIEYADLVQRLYTYSQAQI
                     QAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDAMLLKDNDGGLILEAWEEVERANT
                     RE"
     gene            complement(13191..13682)
                     /gene="dtd"
                     /locus_tag="ACFM6C_000060"
     CDS             complement(13191..13682)
                     /gene="dtd"
                     /locus_tag="ACFM6C_000060"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacyl-tRNA deacylase"
                     /protein_id="HFC6157586.1"
                     /translation="MRAVIQKTVGAKVDVVSENGTETCGKIDGGFVVLLGVTHSDTEK
                     DARYIADKIAHLRVFEDEAGKLNLSLKDVGGAVLLVSQFTLYADAASGRRPSFSQAAP
                     AEQAQQLYLRTAELLRGHGIHVETGRFRTHMQVSLCNDGPVTILLDSFMTRISPKMKV
                     VPD"
     gene            complement(13756..14514)
                     /locus_tag="ACFM6C_000061"
     CDS             complement(13756..14514)
                     /locus_tag="ACFM6C_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HFC6157587.1"
                     /translation="MKQKKTAAAVIAAMLAGFAAAKAPEIDPALVDTLVAQIMQQADR
                     HAEQSQKPDGQAIRNDAVRRLQTLEVLKNRALKEGLDKDKDVQNRFKIAEASFYAEEY
                     VRFLERSETVSESALRQFYERQIRMIKLQQVSFATEEEARQEQQLLLKGLSFEGLMKR
                     YPNDEQAFDGFIMAQQLPEPLASQFAAMNRGDVTRDPVKLGERYYLFKLSEVGKNPDA
                     QPFELVRNQLEQGLRQEKARLKIDAILEENGVKP"
     gene            complement(14585..15451)
                     /locus_tag="ACFM6C_000062"
     CDS             complement(14585..15451)
                     /locus_tag="ACFM6C_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HFC6157588.1"
                     /translation="MKAKILTSVALLACSGSLFAQTLATVNGQKIDSSVIDAQVAAFR
                     AENSRAEDTPQLRQSLLENEVVNTVVAQEVKRLKLDRSAEFKNALAKLRAEAKKSGDD
                     KKPSFKTVWQAVKYGLNGEAYALHIAKTQPVSEQEVKAAYDNISGFYKGTQEVQLGEI
                     LTDKEENAKKAVADLKAKKGFDAVLKQYSLNDRTKQTGAPVGYVPLKDLEQGVPPLYQ
                     AIKDLKKGEFTATPLKNGDFYGVYYVNDSREVKVPSFDEMKGQIAGNLQAERIDRAVG
                     ALLGKANIKPAK"
     gene            complement(15500..15778)
                     /locus_tag="ACFM6C_000063"
     CDS             complement(15500..15778)
                     /locus_tag="ACFM6C_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family protein"
                     /protein_id="HFC6157589.1"
                     /translation="MPAVDLIRERLQTLDPLVLEIGDESHLHKGHAGNTGGGHYAVLV
                     VSGRFEGVSRLNRQKTVKSLLKDLFSGGMIHALGIRAATPDEYFHTAD"
     gene            complement(15778..16068)
                     /locus_tag="ACFM6C_000064"
     CDS             complement(15778..16068)
                     /locus_tag="ACFM6C_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HFC6157590.1"
                     /translation="MEYFMLLATDGEDVHEARMAARPEHLKRLETLKSEGRLLTAGPN
                     PLPEDSNRVSGSLIVAQFESLDAAEAWAEDDPYVHAGVYSEVLIKPFKAVFK"
     gene            complement(16071..16601)
                     /locus_tag="ACFM6C_000065"
     CDS             complement(16071..16601)
                     /locus_tag="ACFM6C_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HFC6157591.1"
                     /translation="MKFVSDLLSVILFFATYTVTKNMIAATAVALVAGVVQAAFLYWK
                     YKKLDTMQWVGLVLIVVFGGATIVLGDSRFIMWKPSVLFWLGALFLWGSHLAGKNGLK
                     ASIGREIQLPDAVWAKLTYMWVGFLIFMGIANWFVFTRFESQWVNYKMFGSTALMLVF
                     FIIQGIYLSTCLKKED"
     gene            16909..19584
                     /gene="tspA"
                     /locus_tag="ACFM6C_000066"
     CDS             16909..19584
                     /gene="tspA"
                     /locus_tag="ACFM6C_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_164729270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FimV/HubP family polar landmark-like protein
                     TspA"
                     /protein_id="HFC6157592.1"
                     /translation="MKNNRQIKLIAASVAVAASFQAHAGLGGLNIQSNLDEPFSGSIT
                     VTGEEAKALLGGGSVTVSEKGLTAKVHKLGDKAVIAVSSEQAVRDPVLVFRIGAGAQV
                     REYTAILDPVGYSPKTKSALSDGKTHRKTAPTAESQENQNAKALRKTDKKDSANAAVK
                     PAYNGKTHTVRKGETVKQIAAAIRPKHLTLEQVADALLKANPNVSAHGRLRAGSVLHI
                     PNLNRIKAEQPKPQTAKPKAETASMPSEPSKQATVEKPVEKPEAKVAAPEAKAEKPAV
                     RPEPVPAANTAASETAAESAPQEAAASAIDTPTDETGNAVSEPVEQVSAEEETESGLF
                     DGLFGGSYTLLLAGGGAALIALLLLLRLAQSKRARRTEESVPEEEPDLDDAADDGIEI
                     TFAEVETPATPEPAPKNDVNDTLALDGESEEELSAKQTFDVETDTPSNRIDLDFDSLA
                     AAQNGILSGALTQDEETQKRADADWNAIESTDSVYEPETFNPYNPVEIVIDTPEPESV
                     AQTAENKPETVDTDFSDNLPSNNHIGTEETASAKPASPSGLAGFLKASSPETILEKTV
                     AEVQTPEELHDFLKVYETDAVAETAPETPDFNAAADDLSALLQPAEAPSVEENITETV
                     AETPDFNATADDLSALLQPSEVPAVEENAAETVADDLSALLQPAEAPAVEENVTKTVA
                     EIPDFNATADDLSALLQPSEVPAVEENVTETVAETSDFHTAADDLSALLQPFETPAVE
                     KFEAPAIEEKAAETVDKTPDFHTVADDLSALLQPAEVPAVEENAAEITLETPDSNTSE
                     ADALPDFLKDGEEETVDWSIYLSEENIPNNADTGFPSESVGSDAPSEAKYDLAEMYLE
                     IGDRDAAAETVQKLLEEAEGDVLKRAQALAQELGI"
     gene            complement(19757..20173)
                     /gene="gloA"
                     /locus_tag="ACFM6C_000067"
     CDS             complement(19757..20173)
                     /gene="gloA"
                     /locus_tag="ACFM6C_000067"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004462 - lactoylglutathione lyase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0051596 - methylglyoxal catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HFC6157593.1"
                     /translation="MRLLHTMLRVGNLEKSLDFYQNVLGMKLLRRKDYPEGRFTLAFV
                     GYGDETDSTVLELTHNWDTERYDLGNAYGHIAVEVDDAYEACERVKRQGGNVVREAGP
                     MKHGTTVIAFVEDPDGYKIEFIQKKSGDDSVAYQTA"
     gene            complement(20197..21366)
                     /gene="lapB"
                     /locus_tag="ACFM6C_000068"
     CDS             complement(20197..21366)
                     /gene="lapB"
                     /locus_tag="ACFM6C_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0008653 - lipopolysaccharide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HFC6157594.1"
                     /translation="MDNELWIILLPIILLPVFFAMGWFAARVDMKTVLKQAKSIPSGF
                     YKSLDALVDRNSGRAARELAEVIDQQPQSYDLNLTLGKLYRQRGENDKAINMHQTLLD
                     SPDTTGAKRARVLFELAQNYQSAGLVDRAEQIFLGLQDGEMAREARQHLLNIYQQDRD
                     WEKAVETARLLSHDEQTYQFEIAQFYCELAQAALFKSNFDAARFNVGKALEANKKCTR
                     ANMILGDIEHRQGNFPAAVEAYAAIEQQNHAYLSMVGEKLYEAYAAQGKPEEGLNRLT
                     GYMQTFPELDLINVVYEKSLLLKGEKEAAQTAVELVRRKPDLNGVYRLLGLKLSDMNP
                     AWKADADMMRSVIGRQLQRSVMYRCRNCHFKSQVFFWHCPACNKWQTFTPNKIEV"
     gene            complement(21377..21691)
                     /locus_tag="ACFM6C_000069"
     CDS             complement(21377..21691)
                     /locus_tag="ACFM6C_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly LapA
                     domain-containing protein"
                     /protein_id="HFC6157595.1"
                     /translation="MKLIYTVIKIIILLLFLLLAVINTDAVTFSYLPGQKFDLPLIVV
                     LFGAFVVGIVFGMFALFGRLLSLRGENGRLRAEVKKNARLTGKELTAPPAQNAPESAK
                     QP"
     gene            22001..22999
                     /gene="ilvE"
                     /locus_tag="ACFM6C_000070"
     CDS             22001..22999
                     /gene="ilvE"
                     /locus_tag="ACFM6C_000070"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HFC6157596.1"
                     /translation="MSRPVPAVFGSVFHSQMPVLAYREGKWQPTEWQSSQDLTLAPGA
                     HALHYGSECFEGLKAFRQADGKIVLFRPTANIARMRQSADILHLPRPETQAYLDALVE
                     LVKRAADEIPDAPAALYLRPTLIGTDPVIGKAGSPSETALLYILASPVGDYFKVGSPV
                     KILVETEHIRCAPHMGRVKCGGNYASAMHWVLKAKAEYGANQVLFCPNGDVQETGASN
                     FILINGDEIITKPLTDEFLHGVTRDSVLTVAKDLGYTVSERNFTVDELKAAVENGAEA
                     ILTGTAAVISPVTSFVIGGKEIEVKSQERGYAIRKAITDIQYGLAEDKYGWLVEVC"
     gene            complement(23243..24028)
                     /gene="fabI"
                     /locus_tag="ACFM6C_000071"
     CDS             complement(23243..24028)
                     /gene="fabI"
                     /locus_tag="ACFM6C_000071"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HFC6157597.1"
                     /translation="MGFLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKL
                     EERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWDGLDGLVHSIGFAPKEALSG
                     DFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAIPNYNVM
                     GMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNPLR
                     RNVTIEEVGNTAAFLLSDLSSGITGEITYVDGGYSINALSTEG"
     gene            complement(24183..25004)
                     /gene="dapD"
                     /locus_tag="ACFM6C_000072"
     CDS             complement(24183..25004)
                     /gene="dapD"
                     /locus_tag="ACFM6C_000072"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008666 -
                     2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HFC6157598.1"
                     /translation="MSLQNIIETAFENRADINPTTVTPEVKEAVLETIRQLDSGKLRV
                     AERLGVGEWKVNEWAKKAVLLSFRIQDNEILNDGVNKYFDKVPTKFADWSEDEFKNAG
                     FRAVPGAVARRGSFVAKNVVLMPSYVNIGAYVDEGAMVDTWATVGSCAQIGKNVHLSG
                     GVGIGGVLEPLQASPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIFDRT
                     TGEIYQGRVPAGSVVVSGSMPSKDGSHSLYCAVIVKRVDAQTRAKTSVNELLRGI"
     gene            complement(25171..26814)
                     /gene="pgi"
                     /locus_tag="ACFM6C_000073"
     CDS             complement(25171..26814)
                     /gene="pgi"
                     /locus_tag="ACFM6C_000073"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004347 - glucose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HFC6157599.1"
                     /translation="MNAFTRAWYALERHYQDTRHVLLRDRFACEPDRFERMHERLDGM
                     LFDYSKNRLGEDTLQLLCRLAETADLEGKMRALRTGAKVNGSEGRAALHTALRLPDGA
                     DAVYVDGRDVLPEIRRELNRALEFAHSLDDGSYQGITGKRITDFVHIGIGGSDLGPAM
                     CVQALEPFRRHIAVHFAANADPACLDAVLCRLNPETTVFCVASKSFKTPETLLNAEAV
                     KAWYRGAGFSESETGCHFCAVSADTEAAQSFGIAAERVFAMYDWVGGRYSVWSPVGLP
                     VMVAVGGARFRELLAGAHAMDSHFFHTPPRRNIPVLMALIAVWYNNFQHADGQTAVPY
                     SHNLRLLPAWLNQLDMESLGKSRASDGSPAVCKTGGIVFGGEGVNCQHAYFQLLHQGT
                     RLIPCDFIVPVTAQGVEDGRSRFTVANAFAQAEALMKGKTLDEARAELADLPEAERER
                     LAPHKEFPGNRPSNSILLDRLTPYNLGMLMAAYEHKTFVQGAIWNVNPFDQWGVEYGK
                     QLAKTIIGELEGGTSVHDASTEGLMAFYRECRLKGGGAA"
     gene            27171..28403
                     /gene="pilG"
                     /locus_tag="ACFM6C_000074"
     CDS             27171..28403
                     /gene="pilG"
                     /locus_tag="ACFM6C_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 4 pilus assembly protein PilG"
                     /protein_id="HFC6157600.1"
                     /translation="MAKNGGFSLFAKKEKRFIFEGRHSASDKLVNGEVSAFTEEEARK
                     KLAKRGIRPLQITRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGN
                     PSMTEMLMEIRGEVEQGSSLSRAFSNHPKYFDRFYCNLVAAGETGGVLESLLDKLAIY
                     KEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTV
                     MDMSDFFVSYGWMVLIALGFAIYGFLKLKARSIKIQRRMDAILLRMPIFGDIVRKGTI
                     ARWGRTTATLIAAGVPLVDVLDSTAGAAGNLIYEEATREIRTRVIQGLSMTSGMRATE
                     LFPNMMLQMSSIGEESGSLDDMLNKAAEFYEDEVDNAVGRLSAMMEPIIIVILGLVIG
                     TLLVAMYLPLFNLGNVVA"
     gene            28477..29337
                     /locus_tag="ACFM6C_000075"
     CDS             28477..29337
                     /locus_tag="ACFM6C_000075"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A24 family peptidase"
                     /protein_id="HFC6157601.1"
                     /translation="MSDLSVLSPFAVPLAAVFGLLVGSFLNVVIYRVPVMMERGWTVF
                     AKEYLNLPLTEEESRTFNLMKPDSCCPKCRVPIRAWQNIPIVSYLLLRGKCASCQTKI
                     SIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
                     LIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWLLCAVYKLIKGEIGMGNGDFKLIAAL
                     GAWLGISALPVLIFVSSLIGLVAAIVMRVAKGQHFAFGPALTVSGWIIFTANDSVWRA
                     VNWWLTHPVL"
     gene            29339..29971
                     /gene="coaE"
                     /locus_tag="ACFM6C_000076"
     CDS             29339..29971
                     /gene="coaE"
                     /locus_tag="ACFM6C_000076"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258461.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HFC6157602.1"
                     /translation="MTVWVGLTGGIGSGKSAAAQCFADLGVPRIDADAAAHSLTASDG
                     IALPEIRRLFGDTVFDTQGLLRRDILRKEIFASPSRKALLESVMLPLIFSEIKKQQET
                     FTDAAYGIVEIPLLTEKRQFISLIRRVLTISAPVEKRIGRVMARSGLTRGEVAAVISH
                     QASESERLLLADDVLLNDGSLKSLREKTMRLHAFYSGIFASKPTQGKHND"
     gene            29964..30173
                     /locus_tag="ACFM6C_000077"
     CDS             29964..30173
                     /locus_tag="ACFM6C_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HFC6157603.1"
                     /translation="MTESRQTRLQVKCPTCQTAVVWKPENAFRPFCSQRCKLIDLGGW
                     ADGKYTVSGQTESLPEISEPDMAYR"
     gene            complement(30258..31934)
                     /gene="pilB"
                     /locus_tag="ACFM6C_000078"
     CDS             complement(30258..31934)
                     /gene="pilB"
                     /locus_tag="ACFM6C_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV-A pilus assembly ATPase PilB"
                     /protein_id="HFC6157604.1"
                     /translation="MSVGLLRILVQNQVVTVEQAEHYYNESQAGKEVLPMLFSDGVIS
                     PKSLAALIARVFSYSILDLRHYPRHRVLMGVLTEEQMVEFHCVPVFRRGDKVFFAVSD
                     PTQMPQIQKTVSAAGIEVELVIVEDDQLAGLLDWVGSRSTSLLQELGEGQEEEESHTL
                     YIDNEEAEDGPVPRFIHKTLSDALRSGASDIHFEFYEHNARIRFRVDGQLREVVQPPI
                     AVRGQLASRIKVMSRLDISEKRIPQDGRMQLTFQKGGKPVDFRVSTLPTLFGEKVVMR
                     ILNSDAASLNIDQLGFEPFQKKLLLEAIHRPYGMVLVTGPTGSGKTVSLYTCLNILNT
                     ESVNIATAEDPAEINLPGINQVNVNDKQGLTFAAALKSFLRQDPDIIMVGEIRDLETA
                     DIAIKAAQTGHMVFSTLHTNNAPATLSRMLNMGVAPFNIASSVSLIMAQRLLRRLCSS
                     CKQEVERPSASALKEVGFTDEDLAKDWKLYRAVGCDRCRGQGYKGRAGVYEVMPISEE
                     MQRVIMNNGTEVDILDVAYKEGMVDLRRAGILKVMQGITSLEEVTANTND"
BASE COUNT         7506 a         8994 c         8192 g         7284 t
ORIGIN      
        1 gcattgtctt gcgtataccg tgcaagatag ccataaggga taaccatttt ggtgccctga
       61 aaatcaaatg taaccgtatg ttcaaatcct gtcattggct cgggattgtt gaaactggtt
      121 tgttcattaa caggtttaca tgaggtcata gtaaaaacac tcccaataaa caaaataaaa
      181 agttgataaa tagtagtagc atatggtctc ataatttcaa gcctagaaat tagttaaaga
      241 atatattcat ggtagatact aactctttaa gttgacatat tgtgcgatat cgagggctgt
      301 accatatttt cccatcgggt cttccccgtt ctttatatga gcggcaggca tcctcataaa
      361 agaagggata ccgataagga aaaatacctc ggcataaaaa atatactgat taatcaatac
      421 aaatccaaca aacagtttat cattttcttt tctgttggcg tataaaaaat actgatatat
      481 gccttcactt tcatagggcg acgctttatg taccgtcctg tgtgttgaaa catcggtttt
      541 ccttaccgcc tgccctgctt ttccctgatt gctgccaact gccgtccgaa cttgaaccgt
      601 caggtttcag acggcatttt ttctgcctgt tcccacaatt tccgtttttg tgcggcggtc
      661 agttttttga cggcgatttc ttgtttgagc gcggtgcctt tatccatccc gcctgcaacg
      721 atacgcatcg ctaccggttt gaatacgcgg gtatatttcg cgccttttcc ggctgtgtgg
      781 gcggcaagcc gctgttgcgg attcgggctg atgccgcaat agaacgcgct gttttcacac
      841 aatatcaggt aaacgctcca gtttgacgcg ttcatctgcc tgcatcccga gttttctccc
      901 cgttccaagg cgcaactttc agcaacaaca gcatacccgg cagggcaagt atgaaacaca
      961 gccggaaaaa cggtacataa ccgagccatt cgatcagata accggcaaag gaattgatga
     1021 ccgtacgggg aacagcggac agactggtaa acagcgcgag ctgcgttgct gtaaacgcgg
     1081 gattggtctc gcgcgccata tacgatacga acgccgccgt ccccaacccc acgccgactg
     1141 cctctgcgcc gataactgcc gccagcatca gcctctcgct tgtaccgact gtgtcgaaat
     1201 gtccgaaccc ggccagccat acaaacccca aaaccgttat tgcctgcacc gcgccgaata
     1261 gccacaaggc tttgttcacg ccgattttca gcatccacat gccgcccaag atacctgccg
     1321 ccactgccgg ccacagtcct gcatttttgg caatcaaacc gatgtcggtc ttgctgaaac
     1381 ccatatccag ataaaacggc gttgccaacg cggttgccat actgtcgccg agtttgtaaa
     1441 ggaagataaa cagcagcacg catacagccg aagcgatgcc cttgcgtgta aaaaattctt
     1501 taaacggctc taccacggtc tgtttcaacg ttttagaaac agcaagcggc aacacgggtt
     1561 cgcgcgcgag aaatagcgtc atcagaagac cgggcagcat aaacagcgaa gtgatgacaa
     1621 acacctccgt ccacggcatc ctgtctgcca acaccaaact caatgaaccg ggaatcaggg
     1681 cggcaacccg ataggcgttc acatgaaccg agttgcccaa acccaattct tcgtccgaca
     1741 aaatctcgcg cctgaacgca tccaatacaa tatcctgact ggcggaaaaa aaagcaacaa
     1801 gcaccgacaa gccagcaatc aacggcagat gattacgggg gtttaaaaag gcatatgccg
     1861 ccaaagccgc cagcaaccct gcctgcgtca acagcatcca cccgcgccgc cgccccaaaa
     1921 cgggcagcct gaccgcgtcc atcagcgggg accacaaaaa tttccaagta aacggcagac
     1981 cgattaacgc catcagcccg atgctcttca aatccacctg ctcgctgcgt aaccatgccg
     2041 gaatcaggtt aatcagaaag tacagcggca gccccgaggt aaaccccgta aaaatacaga
     2101 caagcatatt tcgggaaaag atttgcccga taaaacctga tttcgataca gtcatggttc
     2161 aaacagccaa gaaataaaag cctattgtag caaatatcgc ccaaccgctg aaaaacaccg
     2221 cccctgctcc gccgttttgc cgttcaaatg caaaatgccg tctgaaactt tgttcagacg
     2281 gcatttctac tgaaacctga gagtttacag gctgtaatac atttcaaatt ccagcggatg
     2341 cggtgccatg cggatgcggc ggacatcttc ctctttaaag gcgatgtagc tgtcgatcca
     2401 gtctttgctg aacacgccgc cgcgcaggag gaattcgtgg tcggctttga gggcggccag
     2461 tgcttcttcc aaagaggcgc aaacggtagg gacgagcgcg tcttcttccg gcggcaggtc
     2521 gtagaggttt ttatcggcag ggtcgcccgg atggattttg ttttgaatac cgtccaaacc
     2581 ggccatcaac aaagcggcga acgccaagta tgggttggcg gtcgggtcgg ggaaacgcgc
     2641 ttcgatgcgg cgcgctttgc tgctgttcac agacggaata cggatggacg cggaacggtt
     2701 tttggcggag taggccagtt tggtcggcgc ttcgaagtgc ggcacgaggc gtttgtagga
     2761 gttggtggac ggattggtaa tcgcgttcag ggctttggcg tgtttgatga tgccgccgat
     2821 gtagtagagc gcggtgtcgc tcaagccggc atagccgtcg cctgcgaaca ggttttgacc
     2881 gtctttccaa atggattggt gaacgtgcat accgctgccg ttgtcgccca taatcggttt
     2941 gggcataaag gtggctgttt tgccgaagtt gtgggcaacg ttttgaatca catatttcat
     3001 gtcttgggtt tggtcggcgc gtttgaccaa ggtggcgaaa cgcgtgccga tttccatttg
     3061 gctgccggta ccgacttcac tgtggtggac ttcgacttcg atgccgagtt cttccaaaat
     3121 gtttaccatc gcggagcgca ggtcttggcc gcaatcaatc ggcgcgacgg gggcgtaacc
     3181 gcctttgacg gcagggcggt ggccggtgtt ttgaccgtcc atgtgcagac cgcttgccca
     3241 tgcgccgctt tcggacgtga tttcgtaacg ggttttgtgc atgtcggttt caaattctac
     3301 gccgtcgaag acgaagaatt caggctcggg gccgaagtat gccgtgtcgc cgatgccgga
     3361 agatttcaaa taggcctcgg cgcggcgtgc gatggagcgc gggtcgcggt cgtaaccctg
     3421 accgtcggca gggtcgatga cgtcgcaggt aatgacgacg gtaacatcat cataaaaagg
     3481 atcgacgaag gctgtagacg catcgggacg cagctgcata tcggaagcct gaatgccttt
     3541 ccagccgccg atagacgaac cgtcaaacgc ctgaccgttt tcgaaccact cttcggggtc
     3601 ttccaacacg atgcgcgcag gcacggtaaa gtggtgctgc ttgcctttgg tatcggtaaa
     3661 gcgcaaatcg acaaagcggg cttcgctttc ttcaatcaat tttacggcgt ttttaatgga
     3721 catttttcag ctcctggaaa aagggaaatg gcaaaatatg cggaacgcgg cggcttgacg
     3781 caaagtcggc acgattttac cacgccgatg ccgtctgaaa ccggttttgc gtcaaatttc
     3841 aagccggaaa atatagtttc agacggcaag attgtcaaca atatgcttcg gtttgtctgt
     3901 tccaaagcgg aatgcccgcc cttttgtccg aatgccgaca aaacagatgc cgtctgaaag
     3961 cagttcagac ggcatcgttc ccatcttcgc gccgccgtta taaaatgacc gccccgcctt
     4021 gatggaatat gactatgcac gccctccccc gctacgccgt tttcggcaac cccgttgcac
     4081 acagtaaatc gccgcaaatc catcggcagt ttgcccttca ggaaggcgtt gaaatcgaat
     4141 acggacgcat ttgcgccgac atcggcagtt ttgcacaggc ggttttgaca ttttttggaa
     4201 caggcggttg cggggcaaac gtaaccgtcc cgttcaagca ggaagcgttt gacttggcgg
     4261 acgaacattc cgaacgcgca tcggcggcag gcgcggtcaa tacgctgatt ttgctgaaaa
     4321 acggaaaact gcgcggcgac aataccgacg gtttgggctt ggtcggcgat atagtgaagg
     4381 tgcaacacac agaaattgaa ggcaaaaata tcctattgct cggcgcgggc ggcgcggtgc
     4441 gcggcgtgat tcccgtattg ctggcgcaaa atcccgcccg catcgtcatc gccaaccgga
     4501 cgcgtgccaa agcggaagaa gttgcagcgc gtttcggcat cgaagccgtc tctcctgaca
     4561 gtttggcagg cggtttcgac atcatcgtca acggcacatc cggcggtttg agcggtcaga
     4621 ttcccgatat tccgcccgat atttttcaaa actgcgcgct tgcctacgat atggtgtacg
     4681 gcgaagcggc aaaaccgttt ttggattttg cccggcaatc gggcgcgaaa caaaccgccg
     4741 acggactggg tatgctggtc gggcaggcgg cggcttccta cgccctctgg cgcggtttca
     4801 aaccggacat ccgccccgtc atcgaatata tgaaagccct gtaatatgtt ccgcatcgtc
     4861 aaatggctga ttgccctgcc cgtcggcatc tttatctttt tcaatgccta tgtgtacggc
     4921 aacatcatca cctaccgcgc cgtcgcgccg catcggactg cctttatgtc gatgcggatg
     4981 aagcagtttg aacaagaagg gcgcgatgtt cctctggatt accgctggat gccctacaac
     5041 cgcatttcag tcaacctgaa aaaagccctg attgcttccg aagatgcccg tttcgccgga
     5101 cacggcggct tcgattgggg cggcattcaa aacgccatca ggcgcaaccg gaacagcggc
     5161 gaagtgaagg cgggcggatc gaccatcagc cagcagcttg ccaaaaacct gtttttgaac
     5221 gaaagccgca gctatatccg caaaggcgaa gaagccgcga ttactgcgat gatggaagcc
     5281 gttaccgaca aagacaggat ttttgaactg tatttaaact caatcgaatg gcactacggc
     5341 gtgtttggtg cggaagccgc gtcccggtat ttttatcaaa tacccgccgc caaactgagc
     5401 aaacagcagg cggcgaaact gactgcccgc gtccccgccc cgctctacta cgccgaccat
     5461 ccgaaaagca aacggcttcg caacaaaacc aatatcgtgc tcaaacgtat gggttcggca
     5521 gaattgcctg aagacgacac ggactgagtg ccgccgcgat ataaaatgcc gtctgaaata
     5581 tcattcagac ggcatatgct ttctgccttt accctcttct ccaaaacgca acggggcggt
     5641 cattatcatt tttgcccttc tacataacgg tcagacacaa aacgtgtccg acacggacaa
     5701 tttcccaaaa acggcaggca aaaaaataac cgcttcaaag cggttttttg gtggccagag
     5761 gcggaatcga accgccgaca cacggatttt caatccgttg ctctaccaac tgagctatct
     5821 ggcctttgtc tgtctcatta agagatgcgt attaaaccaa attacgggac aacacgcaag
     5881 cggatttgtc gatatttttt acccaaccga ctaagtcgat gttttaagtt taaattaatt
     5941 tcacagaaaa atagtgcaaa tcggtttttt gccgtttgtt cggcgatgtt ctgcttttca
     6001 gacggcaaaa cgcttcaata tttgaagttc tcacccagat aaacagaacg aacctgttcg
     6061 tttccgacca aatcatcagg ttttcccgat gccagcaccg tgccgtctga aataatgtag
     6121 gcgcggtcgc agatgctgag ggtttcgcgt acgttgtggt cggtaatcag tacgccgatg
     6181 ccgcgcgatt tgagaaatcc gatgattttt tggatgtcga tgacggcgat gggatcgacg
     6241 ccggcaaaag gctcgtccaa caaaataaaa tgcggtttca tggcaagtac gcgggcgatt
     6301 tcgacgcgtc ggcgttcgcc gcccgacaaa gatggggcag gattattgcg caaacgctcg
     6361 atattcaggt cggcaagcag tttttcaact tcgccgtcga tgcggctttt gtctttggta
     6421 ctgatttcta aaatggcgcg gatgttttgt tcgacggtca ttttacggaa aatagaggct
     6481 tcctgcggta ggtagccgac acccaggcgg gcgcgttcgt gtatgggcag gtgacgcaat
     6541 tcctgcccgt ccagcatcac gctgcccgca tcggcggcaa tgagtccaac aatcatgtag
     6601 aagctggtgg ttttacccgc accgttgggc ccgagcaggc cgacgacttc cccgctttcg
     6661 atttcaaggg agaagctttt aacgacttgg cgttttttaa aactcttttg caggttttga
     6721 acaacaaggc ggctgacgtt tgcgctcata aatatctctt caatatcttc ggtcggcata
     6781 tgccgtcgga accgggttta tgtttcagac ggcattttgg gattattcgg atttttgcgt
     6841 actcgaaggc tggatgatga cgctgaccct gccggatttg gaagcggatt ttgcgccgga
     6901 ttttgtactg ccgctgatgg tatagacttc ggttttggtg ttgtaggtaa tcaccgcgcc
     6961 ttcggcgaca tcgccgccgc gctgtacttt ggcattaccg gttaagacta cggtgctgcc
     7021 tgcagacgaa taagcaacgt tgtttgcctg accgcgcacc gtccctttgc ccccgtccaa
     7081 cgtttggctg aagcgtacgg gcgagccgtc ggccttcata aactgttcgc ctttgtcatt
     7141 acgcgttacg ttgacgcggg cggcggaaat attgagcgta ccctgtctga tgacaacgtt
     7201 tccgctaaat gtagtgcttt ggttggcttg attgagagaa ccttggtcgg cctcaatctg
     7261 aataggctgc ctgctgtcgc cttgaagggc aaaagcggga gatgccgaaa aaaatgctat
     7321 taaaacaaat agcttacata tcttttgtat cataaatcgt ggctttcact ttagatgaga
     7381 agttcaacag gcctgttttg tggtcgtaag tcatgccgcc cgcctgcccg tgcgacgcac
     7441 cgtattgaaa gctgacgggc gtatcggttt gggcatattg agattcggta tcgacgtgca
     7501 gcttttcggt tttaacttta cccgcctgcc gtttgccatc ggcggttttg gtcagcacaa
     7561 cgttgttttt aaaaagaacc tgtttgtttt cggtatggta aacggcttca tcgctgccga
     7621 cttcgtacaa caacctgcct tcttggaaga acacgagatg cggcgaatca aaatggatgt
     7681 cgctgctttc gggaaactgt ttcgcgcctt tcgcgctcaa atgttctttt aagtatccct
     7741 gttcgtcaaa ccgcctgcca tccaatccgt ccattgtgta ttgcggttcg tcgggattga
     7801 gcctgacttc ttcaatctcg acttcgctga tgcgccccaa ccatgccgac aggctgccca
     7861 aggcaaccgc caatatcaat gggaacgcaa ttccgtaccg ccatcttatt ttcatttgat
     7921 gtactcgttc aaagccgcgc ccaaagtccc ttgcgcctgc ataatcaggt cgcacacttc
     7981 gcgcaccgcg cccgcaccgc aggggcgttt ggcaatatag gcggcgtgtt gcagcgtaaa
     8041 ccaatgcgcg tcggggacgg caaccggcaa tccgcaacgc accatcaccg gcaaatcgac
     8101 cacgtcgtcg ccgacaaagg cacactcggc ttcttccacg ccaacctgag cgcgcagctc
     8161 ttcatacgcg gcgcgtttgt ccgaaatgcc tttgaagtag taatttatgc ccaactgttt
     8221 gacgcggatg ccgacggagg gcgcgtcccg acctgtgata atcgcagtct gcacgccgct
     8281 tgcctgaagc attttcagac cgtgtccgtc cagtgtgtga aacgatttga tttcttcgcc
     8341 gttatcgcgg ataaagatgc gcccgtcggt caaaacgccg tccacatcca atatcagcag
     8401 tttgattttg gcggcgcgcg cctgtaattc gggagaaatt gcctgcatgg gatttccttg
     8461 ttttcagacg gcacatttta gcacaaatgc cgtctgaaac ggctgcaacg ccttatatag
     8521 tggattaaca aaaatcagga caaggcgacg aagccgcaga cagtacagat agtacggcaa
     8581 ggcaaggcga ggcaacgctg tactggtttt tgttaatcca ctatacaatc cgtgccgcca
     8641 gcaggtcgtg catattcagc gcgccaatca gtacgccgtc ggcatcagta accagaagcc
     8701 cattcacatg gtttgcctgc atgactttca gggcttcggt ggcgaggcgt tcggcggaga
     8761 tggttttagg atgcgtatgc atgacttcgt ctatcgaaag accggtaaaa ttgtcgcatt
     8821 cttgaaacag gcggcgcaaa tcgccgtcgg tgaatacgcc tttcagacgg ccttgcccgt
     8881 ccgttaccgc cagcatcccc agcccttttt cactcatgct gacgatggct tctttcaagg
     8941 gcgtgccgag tcggacggcg ggcaggccgc cgcctttgtg cataatgtcg gcaacgcgca
     9001 aaagtaggcg tttgccgagg ctgccggcag gatggctcaa ggcgaaatcg tcgggcgtga
     9061 acgcgcgtgc gcgcagcagg acgaccgcca acgcatcgcc caaagccatg acggcggtgg
     9121 tgctggtggt cggggcaagc cccagcgggc aggcttcttt ggaaaccgac gccgtgatgt
     9181 ggatgtcggc atggcgcgcc atggttgaat cggggcgggc ggtgatgcag acaagcgtga
     9241 tgtctttgcg tttgagcgcg gggatgatgg cggcgatttc gtcgctttcg ccggaattgg
     9301 aaatcgcgac gaccacgtcg ttgtccacaa tcatgcccaa atcgccgtgt gccgcttccg
     9361 cagggtggac gaaaaacgcg ggcgtgccgg tcgaggccat ggttgccgcc attttgcgcc
     9421 cgatatgtcc cgacttgccc atgcccgtga taacaaccct gcccttgcag tgcaacaacg
     9481 cgtctgccgc aaggacgaag ttttcgtcca attccgctgc aatttcgcgc aagccttccg
     9541 cttcggtgtg caacacttcg cgcgcccagt cgagatattt tccgttttct gccattgcca
     9601 tccgcctttg ctgtaacaaa actacccaaa atttccgaat cggggtagca taagcattca
     9661 aaccccgcca tccatccaaa ggaatcagaa atgactattt tatcggacgt taaagcatta
     9721 ggacaacaaa tctggctgga caacctttcc cgctcgctcg tgcaaagcgg cgaattggcg
     9781 caaatgctga aacaaggcgt gtgcggcgta acttccaatc ccgccatctt ccaaaaagcc
     9841 ttcgccggcg acgcgcttta cgccgatgaa atcgccgccc tcaagcagca aaacctcagc
     9901 cccaaacaac gctacgaaac catggcggtt gccgatgtgc gtgccgcctg cggcgtttgc
     9961 cttgccgaac acgaatccac cggcggcaaa accggtttcg tcagcctcga agtttcgccc
    10021 gaattgtcca aagacgcgca aggcacggta gaagaagcgc gccgcctcta cgccgccatc
    10081 gggtgcaaaa acgcgatgat taaagtgcct gccaccgacg caggcatcga tgcgctcgaa
    10141 atcctcgttt cagacggcat cagcgtaaac ctcacgctgc tgttctcacg cgcccaaacc
    10201 ctcaaagcct acgccgccta cgcgcgcggc attgccaaac gcttggcagc cggacaaagc
    10261 gttgcccata tccacgtcgt cgccagcttc ttcatctccc gtgtggacgg cgcgctggac
    10321 acaacgctgc ccgaccacct caaaggcaaa atcgccatcg cccttgccaa aaccgcctat
    10381 caagattggg aacaatattt caccgccccc aaatttgccg cactggaagc ccaaggcgca
    10441 aaccgcgtgc agcttttatg ggcatctacc ggcgtgaaaa acccagccta tcccgacacg
    10501 ctctacgttg acagcctgat cggcgcgcac accgtcaaca ccgttcccga tgccacgctc
    10561 aaagccttta tcgaccacgg cacagccaaa gccacgctga ccgaaggcgt ggacgaagca
    10621 cgggcgcggc tcgctgaaat tgccgcgctc ggcatcgatg tcgaaacctt ggcggcgcgt
    10681 ttgcaggaag acggtttgaa acagtttgaa gaagcgtttg aaaaactgct cgcaccgttg
    10741 gtttaaactt ttcatccccg atgccgtctg aaaggctttc agacggcatc gcccttttga
    10801 ccggacacag tgggttcacc ctaaaaatat taatcaacaa gaagttaatg cacgacatta
    10861 cccaccaaca caaaaggaaa tagaatcatg gcaaaagcac tcgaaatcat ttcacccaat
    10921 gaaatttatt cagatctaat ttttaaggat ccggtacctc cccatactat atatacagaa
    10981 ttgatgaaac tgattggtag aaatgcaagt aatgagagaa tcgcagatag agccttcgat
    11041 tttttctcgt ccggccttat ggatggttca gctaccgaag agcaatataa tgctctatat
    11101 gatttaacct tgcttgaaga gcccgggatg gaactgaata aagatgagat aatggctttg
    11161 attcatagtc ttaaataaag gggctgtacc ggatatgtac acaggacgtt tcgcccccag
    11221 cccgaccggg ctgctccaca tcggctcgct gctgaccgcc gccgcttcct atgccgatgc
    11281 acgctcaaac ggcggcaaat ggctggtccg catggaagac ctcgatccgc cgcgcgaaat
    11341 gccgggggcg gcaagccata tcctgcacac gcttgaggca ttcggattcg agtgggacgg
    11401 agaagtcgcc tatcagagcc accgttacgc cctgtatgaa gaaaccctat gccgtctgca
    11461 aaccgccgga ctggtctatc cctgccattg cagccgcaaa gactggcagg ccggggcaag
    11521 gcggggcgca gacggattcg tctataacgg acgttgccgc caccccggcc aacgccctgc
    11581 accgcaaggc aaacagccgg cgtggcgcat ccgcgtcccc gaccgcatta tcggtttttc
    11641 agacggcatc gtcggcggtt acgcccaaaa cctcgcccgc gacatcggcg atttcgtcct
    11701 gcttcgtgca gacggttact gggcatacca actcgccgtc gttgccgacg atgccgaaca
    11761 gggcgttacc cacatcgtcc gcggacaaga cctgctcgtt tccactccgc gccaaatcta
    11821 tttgcagcag tgtttgggcg ttccgacacc gcaatatgcc cacctgccgc tgctgaccaa
    11881 cgcacaaggg cagaaatggt cgaaacagac gctcgccccc gcattggatt taaaccgccg
    11941 cgaacaactc ctccgccaag tgttccgtta cctcaagctg cccgaagcac cggaaaccga
    12001 ccgccctgcc gaactgctcg actgggcggt ggcacactgg gatatggaca aagtgccgaa
    12061 acacgccatt accaccccct aaacaccgcc cgacaaacgc acaaatgccg tctgaaactt
    12121 tcagacggca tttcacatac agccccgccc tattcgcgcg tatttgcccg ttcgacttct
    12181 tcccacgctt cgagaatcag gccgccgtcg ttgtctttca agagcatcgc gtcggaaagc
    12241 atacgccgcc aagtccgcgc acctttcaaa ccgtgcatca gcccgaggct gtggcggacg
    12301 atgtggcgca agattgtgcc gcgtccggct tggatctggg cttggctgta tgtgtagaga
    12361 cgctgcacca aatcggcgta ttcaatcggg ctgcgggtat cgccgtaaaa cagcctgtcc
    12421 cattcgcgca tcaccatcgg gttgtggtac gcctcgcgcc cgaccatcac gccgtcaacg
    12481 tgttgcaggt gtccggcgat tgcttcgttg gtggtgatgc cgccgttgat gatgatttcc
    12541 agcccgggaa actcctgctt gaggcggtaa acgtaatcgt atttcaacgg gggaacgtcg
    12601 cggttttctt tgggggaaag accgtccagc caagcgttgc gggcgtggac gataaaggtt
    12661 ttgcaggcgg ttttgtcgcg cagcgtgccg acgaaatcgg caacggtttg gtattcggtc
    12721 tgcctgtcca caccgatgcg gtgtttgacg gtaacgggaa tcttgaccgc atcctgcatg
    12781 gcgttgaggc agtcggcaac cagcccgact tcgttcatca gacacgcgcc gaacgagcct
    12841 ttctgcacgc gcggactggg gcagccgcag ttgaggttga cctcgttgta accgtatgcc
    12901 tcggcggctt tggcggcttt cgccaaatcg gacggatcgc tgccgcccag ttgcagggcg
    12961 acgggctgct cgccttcgtt gaacatcaaa aagcggtctt tgtcgccgta aacaatcgca
    13021 ccggcattga ccatttcgct gtacagccaa gtatttcggg taatctggcg ggcaaggtaa
    13081 cggtagtgcc tgtccgtcca gtcgagcatc ggggcgacgg aaaggcggcg cgggggaagg
    13141 gtttgcgtgt tgtcgttcat tgtcgatatt tcaccattgc ggattcaatt tcaatccgga
    13201 acaaccttca tttttgggga aatccgcgtc atgaaagagt ccagcagtat ggttaccggc
    13261 ccgtcgttac agagcgacac ctgcatatgc gtgcggaaac gccctgtttc gacatgaatc
    13321 ccgtgtccgc gcaacagttc cgccgttcgc aggtaaagct gctgcgcctg ttctgcaggt
    13381 gcggcttggg aaaacgaagg ccgccgcccg cttgccgcat cggcataaag tgtaaactgc
    13441 gacaccagca gcaccgcgcc gccgacatct ttcaaagaca ggttcaactt gcccgcttcg
    13501 tcttcaaaca cgcgcaaatg ggcgattttg tcggcgatat agcgtgcatc tttttctgtg
    13561 tcgctatgcg ttacaccgag tagcacgacg aatccgccgt cgattttgcc gcaggtttcc
    13621 gtgccgtttt cggacacgac atccaccttt gcacctaccg ttttctgtat gaccgcacgc
    13681 ataagccgtc ctccttacct gaacgtgcaa tgccgtctga aaaggcttca gacggcatcg
    13741 gtattggaaa tgccattacg gtttgacacc gttttcttcc aaaatggcat cgattttcaa
    13801 gcgggctttt tcctgtctca aaccttgttc caactggttt ctgaccaact cgaaaggctg
    13861 cgcgtcgggg tttttcccga cctcgctgag tttgaacaga taatagcgtt cgcccaattt
    13921 gaccggatcg cgggtaacgt cgccccgatt catcgctgca aactgcgaag ccagcggctc
    13981 gggaagctgc tgcgccataa tgaaaccgtc aaacgcctgc tcgtcgttcg gataacgctt
    14041 catcagccct tcaaaagaca gccctttgag caggagctgc tgctcctgac gcgcctcctc
    14101 ttcggttgcg aagctgacct gctgcaattt gatcatgcgg atttgccgct cataaaactg
    14161 acgcagtgcg ctttcggaaa ccgtttccga acgttccaga aaacggacgt actcctcggc
    14221 ataaaaagac gcttcggcga ttttaaagcg gttttggaca tccttatcct tatccaaacc
    14281 ttccttcaat gccctgtttt tcaaaacttc caaagtttgc agccgacgga cggcatcgtt
    14341 tcggattgcc tgcccgtccg gtttttggga ctgctccgca tgccggtctg cctgctgcat
    14401 gatctgcgcc accagcgtat ccaccaaagc cgggtcgatt tcgggtgctt tggctgccgc
    14461 aaaacctgcc aacattgcag caataactgc ggcagcggtt tttttctgtt tcatggtatt
    14521 ccctgtcctg cgcggcggca aaacgcctgt ctgaacgtct tgccgccata tcccgttttc
    14581 agaattattt tgcaggtttg atgtttgcct tgcccaacag tgcaccgacg gcacggtcaa
    14641 tccgttccgc ctgaaggttg cccgcaatct gtcctttcat ttcatcaaaa gaaggcactt
    14701 ttacctcgcg gctgtcgttg acataataaa cgccgtagaa atcgccgttt ttcagcggcg
    14761 ttgccgtaaa ttcgcctttt ttcaagtcct taattgcctg ataaagcggc ggaacaccct
    14821 gttccaaatc tttcagcggc acatatccga ccggcgcacc ggtctgtttg gtacggtcgt
    14881 tgagggaata ttgtttcaag acggcatcga aacctttttt cgccttcaag tcggcaaccg
    14941 ctttttttgc attttcttcc ttgtcggtca ggatttcgcc caactggact tcctgcgtac
    15001 ctttgtaaaa accgctgata ttgtcatatg cggcttttac ttcctgctcg gaaaccggtt
    15061 gggttttggc gatatgcaat gcgtatgcct cgccgttcaa gccatatttt accgcctgcc
    15121 aaacggtttt gaaggacggt ttcttgtcgt cgcccgactt tttcgcttcg gcacgcaatt
    15181 tggcaagcgc atttttaaac tctgccgacc ggtcgagttt caggcgtttc acttcctgtg
    15241 cgaccacggt attgaccact tcgttttcca gcagggattg gcgcagttgc ggcgtgtctt
    15301 cggcacggct gttttccgca cggaatgcgg caacctgcgc atcgatgacg gaactgtcga
    15361 ttttctgacc gttgacggtt gccagcgttt gggcaaacag gctgccggaa caggcaagca
    15421 gtgcaacgga agtcaggatt tttgctttca taatcttctc tctttaaatt ttaaattgaa
    15481 atgttcgggc agacttcatt cagtccgccg tatggaaata ctcgtcaggg gtagccgccc
    15541 ggatgccgag cgcgtgaatc atgccgcctg aaaacaaatc tttgagcagc gatttgaccg
    15601 ttttctggcg gttcaggcgg cttacgcctt caaaacggcc gctaacgacc aaaacggcat
    15661 aatgtccgcc gccggtattg cccgcgtgtc ctttgtgcag atggctctca tcgccgattt
    15721 ccaacaccag cggatcgagc gtctgcaggc gttcgcggat caaatcgacg gccggcatta
    15781 tttgaacacc gctttaaacg gcttgatcag cacttcgctg tacacgcctg catgaacata
    15841 gggatcgtct tccgcccacg cctctgccgc atccaaagac tcgaactgcg ccacaatcaa
    15901 actgcccgaa acgcggttgg agtcctccgg caaaggattc gggcctgccg tcaacagccg
    15961 gccttccgac ttcagcgtct ccagccgttt gaggtgttcg ggacgtgccg ccatacgcgc
    16021 ctcgtgcaca tcctccccgt ctgttgccag caacataaaa tattccacag tcaatcctcc
    16081 tttttcagac aggtactcag ataaataccc tgaataataa agaaaacaag catcagtgca
    16141 gtcgagccga acattttata gttgacccat tgcgactcga accgggtaaa cacaaaccag
    16201 ttggcgatac ccataaaaat caggaaaccg acccacatat acgtcaattt cgcccatacg
    16261 gcatccggaa gctgaatctc cctgccgata ctcgccttca agccgttttt accggcgagg
    16321 tggctgcccc acaggaacag cgcgcccagc caaaacaaaa cgctcggctt ccacataatg
    16381 aagcggctgt cgcccaaaac aatggttgcg ccgccgaata ccacaatcag caccaatccg
    16441 acccactgca tcgtatccag ctttttatat ttccaataca gaaaagccgc ctgaaccaca
    16501 ccggcaacca aggcaaccgc cgtagcggca atcatatttt tggtaacggt ataagtagca
    16561 aaaaacaaga tgacagacaa aaggtcgctg acgaatttca tatccaaatg agaaagcaaa
    16621 tcaaataaac gctaatcata caggcagaac cctgtttttg cacctgcaaa accaacaaat
    16681 tttgttttga ttgatgcaaa tatgcacaga tgtttttgaa aaaagatgga gatatgtcat
    16741 aatttgtaaa aacggcgaat gattgccgtt taaaatgtgg cggcggtcgg tacattcaca
    16801 tattaaatgc ccgccggccg actgccccgc cgatgcccga tgatgacgaa atttacagac
    16861 tgtacgcggt caaaccgtat tcagccgcca acccacaggg gatacatctt gaaaaacaac
    16921 agacaaatca aactgattgc cgcctccgtc gcagttgccg catcctttca ggcacatgct
    16981 ggactgggcg gactgaatat ccagtccaac cttgacgaac ccttttccgg cagcattacc
    17041 gtaaccggcg aagaagccaa agccctgcta ggcggcggca gcgttaccgt ttccgaaaaa
    17101 ggcctgaccg ccaaagtcca caagttgggc gacaaagccg tcattgccgt ttcttccgaa
    17161 caggcagtcc gcgatcccgt cttggtgttc cgcatcggcg caggcgcaca ggtacgcgaa
    17221 tacaccgcca tcctcgatcc tgtcggctac tcgcccaaaa ccaaatctgc actttcagac
    17281 ggcaagacac accgcaaaac cgctccgaca gcagagtccc aagaaaatca aaacgccaaa
    17341 gccctccgca aaaccgataa aaaagacagc gcgaacgcag ccgtcaaacc ggcatacaac
    17401 ggcaaaaccc ataccgtccg caaaggcgaa acggtcaaac agattgccgc cgccatccgc
    17461 ccgaaacacc tgacgctcga acaggttgcc gatgcgctgc tgaaggcaaa cccaaatgtt
    17521 tccgcacacg gcagactgcg tgcgggcagc gtgcttcaca ttccgaatct gaacaggatc
    17581 aaagcggaac aacccaaacc gcaaacggcg aaacccaaag ccgaaaccgc atccatgccg
    17641 tccgaaccgt ccaaacaggc aacggtagag aaaccggttg aaaaacctga agcaaaagtt
    17701 gccgcgcccg aagcaaaagc ggaaaaaccg gccgttcgac ccgaacctgt acccgctgca
    17761 aatactgccg catcggaaac cgctgccgaa tccgcccccc aagaagccgc cgcttctgcc
    17821 atcgacacgc cgaccgacga aaccggtaac gccgtttccg aacctgtcga acaggtttct
    17881 gccgaagaag aaaccgaaag cggactgttt gacggtctgt tcggcggttc gtacaccttg
    17941 ctgcttgccg gcggaggcgc ggcattaatc gccctgctgc tgcttttgcg ccttgcccaa
    18001 tccaaacgcg cgcgccgtac cgaagaatcc gtccctgagg aagagcctga ccttgacgac
    18061 gcagcagacg acggcataga aatcaccttt gccgaagtcg aaactccggc aacgcccgaa
    18121 cccgctccga aaaacgatgt aaacgacaca cttgccttag atggggaatc tgaagaagag
    18181 ttatcggcaa aacaaacgtt cgatgtcgaa accgatacgc cttccaaccg catcgacttg
    18241 gatttcgaca gcctggcagc cgcgcaaaac ggcattttat ccggcgcact tacgcaggat
    18301 gaagaaaccc aaaaacgcgc ggatgccgat tggaacgcca tcgaatccac agacagcgtg
    18361 tacgagcccg agaccttcaa cccgtacaac cctgtcgaaa tcgtcatcga cacgcccgaa
    18421 ccggaatctg tcgcccaaac tgccgaaaac aaaccggaaa ccgtcgatac cgatttctcc
    18481 gacaacctgc cctcaaacaa ccatatcggc acagaagaaa cagcttccgc aaaacctgcc
    18541 tcaccctccg gactggcagg cttcctgaag gcttcctcgc ccgaaaccat cttggaaaaa
    18601 acagttgccg aagtccaaac accggaagag ttgcacgatt tcctgaaagt gtacgaaacc
    18661 gatgccgtcg cggaaactgc gcctgaaacg cccgatttca acgccgccgc agacgatttg
    18721 tccgcattgc ttcaacctgc cgaagcaccg tccgttgagg aaaatataac ggaaaccgtt
    18781 gccgaaacac ccgacttcaa cgccaccgca gacgatttgt ccgcattact tcaaccttct
    18841 gaagtacctg ccgttgagga aaatgcagcg gaaaccgttg ccgatgattt gtccgcactg
    18901 ttgcaacctg ctgaagcacc ggccgttgag gaaaatgtaa cgaaaaccgt tgccgaaata
    18961 cctgatttca acgccaccgc agacgatttg tccgcattac ttcaaccttc tgaagtacct
    19021 gccgttgagg aaaatgtaac ggaaactgtt gccgaaacgt ccgacttcca caccgccgca
    19081 gacgatttgt ccgcgctgct gcaacctttt gaaacacctg ccgttgagaa atttgaagca
    19141 ccggctattg aagaaaaagc agcggaaacc gttgataaaa cgcccgactt ccacaccgtt
    19201 gccgacgatt tgtccgcgct gctgcaacct gctgaagtac ctgccgttga ggaaaatgca
    19261 gcggaaatca ctttggaaac gcctgattcc aacacctctg aggcagacgc tttgcccgac
    19321 ttcctgaaag acggcgagga ggaaacggta gattggagca tctacctctc ggaagaaaat
    19381 atcccaaata atgcagatac cggtttccct tcggaatctg taggttctga cgcgccttcc
    19441 gaagcgaaat acgaccttgc cgaaatgtat ctcgaaatcg gcgaccgcga tgccgctgcc
    19501 gagacagtgc agaaattgct ggaagaagcg gaaggcgacg tactcaaacg tgcccaagca
    19561 ttggcgcagg aattgggtat ttgattccca actgcccttt cgcagatcaa ggatgccgtt
    19621 tcagacggca tctttttttg ccttatcggt gtaacggata aagtttgaac cggcacaggc
    19681 tcaaacagca ggtcgacggc aacaaaatgc cgtctgaaac ccctaaaggc ttcagacggc
    19741 attggcggcg gcggtatcag gcagtttgat aggcaaccga atcgtcgccg cttttctttt
    19801 gaatgaactc gattttgtat ccgtcggggt cttcgacgaa ggctatcacg gttgtgccgt
    19861 gtttcatcgg gccggcttcg cggacgacgt ttccgccctg ccgcttcaca cgttcgcagg
    19921 cttcgtaggc atcgtccact tcaaccgcga tgtgtccgta ggcgttgccc aagtcgtatc
    19981 gttccgtatc ccagttgtgc gtcagttcca aaaccgtgct gtcggtttca tcgccgtaac
    20041 cgacgaaggc aagggtaaat ctgccttcgg gataatcttt tcggcggagc agtttcatac
    20101 ccaaaacgtt ttggtagaaa tcgagggatt tttcgagatt gcccacgcgg agcatagtat
    20161 ggagtaagcg catttttgtg ttcctctcgg tagtggttaa acttcgattt tgtttggcgt
    20221 aaacgtctgc catttgttgc aggcaggaca atgccagaaa aagacttgtg atttgaagtg
    20281 gcagtttcgg caccggtaca tcacgctgcg ctgtagctgc cgtccgataa ccgaacgcat
    20341 catgtcggca tcggctttcc aagccggatt catatcgctg agtttcaaac cgagcaggcg
    20401 gtacacgccg ttaaggtcgg gcttgcggcg gacaagctcg acggcggttt gcgcggcttc
    20461 tttctcgccc ttaagcagca gggatttctc gtacacgaca ttgatcaggt caagttcggg
    20521 aaacgtctgc atatatcctg tcagacggtt caagccttct tcaggttttc cctgcgcggc
    20581 ataggcttcg taaagcttct cgccgaccat gctcaagtat gcatggtttt gctgctcgat
    20641 ggcggcatag gcttcgacgg cggcagggaa attgccttgt cggtgttcga tgtcgcccaa
    20701 aatcatgttg gcgcgggtgc attttttgtt ggcttcgagt gccttgccga cattgaaacg
    20761 cgcggcatcg aaattggact tgaacagcgc ggcttgggca agttcgcaat agaactgtgc
    20821 aatctcaaac tgataggtct gctcgtcatg gctgagcagc cgggcggttt caaccgcttt
    20881 ttcccaatcc ctgtcctgtt ggtagatatt gagcaggtgc tgtctggctt cacgcgccat
    20941 ttcaccgtct tgcagcccca aaaaaatctg ttcggcacgg tcaaccaacc ccgcactttg
    21001 atagttttgc gccaattcaa ataatacgcg cgcacgcttg gctccggttg tatcgggaga
    21061 gtcaagcaat gtttggtgca tattgatggc tttgtcgttt tcgccacgct gacggtaaag
    21121 cttgcctagg gtgaggttca ggtcgtatga ctgaggctgc tgatcgatga cctctgccaa
    21181 ttccctggcg gcacgtccgc tgttgcggtc aaccaaggca tccagacttt tataaaatcc
    21241 cgacggtatg ctttttgcct gctttaatac agtcttcata tccacgcggg cggcaaacca
    21301 gcccatcgcg aagaaaacgg gcaaaaggat aatcggcagc aggataatcc acaattcatt
    21361 gtccatatcg gctttctcaa ggctgtttgg cagattcggg cgcattttgc gccggtggtg
    21421 cggtcagctc cttccccgtc aaacgcgcat ttttctttac ttcggcacgc aacctgccgt
    21481 tctcgccacg taacgacaac aaccgtccga acaaggcaaa cattccaaaa acaataccga
    21541 ctacaaatgc gccgaacaat acgacaatca gcggcaaatc gaatttttgc cccggcaggt
    21601 aggaaaaggt aacggcatcc gtattaatga cagcaagcag caggaagagc agcaggataa
    21661 tgattttgat gacggtatag ataagtttca tgtttgctcc gtaaataaaa acgccgcccg
    21721 gacagcttcg cactctgaac caagattgcg ctagtttaaa cgatttgcac ggtttcggat
    21781 aggatgcggc agcgtgttcg gacgacatac ggagtatgcg attgccgaca attttaccaa
    21841 atacaccgtt cctttccatt tgaaaaataa cggattggac accgcatcga cagaaaaacc
    21901 cgccgcgcac ttgtcaaaac cctgttggca ggcgtatctt tacaatcttc aaattcaaac
    21961 cgttcattga aacatatcag aataagaaag gctttacatc atgagcagac ccgtacccgc
    22021 cgtattcggc agcgtttttc acagtcaaat gcccgtcctc gcctaccgcg aaggcaaatg
    22081 gcagccgacc gaatggcaat cttcgcaaga cctcaccctc gcacccggcg cgcacgccct
    22141 gcactacggc agcgaatgct ttgaaggctt gaaagccttc cgtcaggcag acggcaaaat
    22201 cgtgctgttc cgtccgactg ccaacatcgc gcgtatgcgg caaagtgcgg acattttgca
    22261 cctgccccgc cccgaaaccc aagcctatct cgatgctttg gtcgaactgg tcaaacgcgc
    22321 cgccgatgaa attcccgatg cgcctgccgc cctgtacctg cgtccgacct taatcggtac
    22381 cgatcccgtt atcggcaaag ccggttctcc ttccgaaacc gccctgctgt atattttggc
    22441 ttcccccgtc ggcgactatt tcaaagtcgg ctcgcccgtt aaaatcttgg tggaaaccga
    22501 acacatccgc tgcgccccgc acatgggccg cgtaaaatgc ggcggcaact acgcttccgc
    22561 catgcactgg gtgctgaagg cgaaagccga atatggcgca aatcaagtcc tgttctgccc
    22621 gaacggcgac gtgcaggaaa ccggcgcgtc caactttatc ctgattaacg gcgatgaaat
    22681 cattaccaaa ccgctgaccg acgaattttt gcacggcgta acccgcgatt ccgtactgac
    22741 ggttgccaaa gatttgggct ataccgtcag cgaacgcaat ttcacggttg acgaactcaa
    22801 agctgcggtg gaaaacggtg cggaggcgat tctgaccggt acggcagccg tcatctcgcc
    22861 cgttacttcc ttcgtcatcg gcggcaaaga aatcgaagtg aaaagccaag aacgcggcta
    22921 tgccatccgt aaggcgatta ccgacatcca gtatggtttg gcggaagaca aatacggctg
    22981 gctggttgaa gtgtgctgat gctttaaata aaaaatgccg tctgaaaccc gtttggcgtt
    23041 tcagacggca ttttcgcatc cgaaccgttt ccgctgcacc tgcagcaagt cggcacaaag
    23101 gcaatcggtt aaaacaagcg tccgcatttc ccatcccgcc tgccgtaagt cgggcatttc
    23161 tctagaaata cgcttcagac ggcaaaccgc cgcccgaaac cgatatgcgg tacggacggc
    23221 gcacggattt gaaaacggcg gattatccct ctgtgctcaa ggcattgatg ctgtaaccgc
    23281 cgtcaacgta agtgatttcg ccggtaatgc cggacgacag gtcggacagc aggaaggcgg
    23341 cggtattgcc gacttcttcg atggtaacgt tgcggcggag cggattgtgg gcggcgacgt
    23401 gtcccaagag tttgccgaaa tcggcgatgc cggaggcggc aagcgttttg atcgggcctg
    23461 cggaaatgcc gttgcagcgg atgccttctt tgcccagaca ggcggcggta aaacggatgc
    23521 ccgcctcaag gctggctttt gccataccca tcacgttgta attcggaatc gcgcgcaccg
    23581 cgcccaagta gctcagggca acgatggcgg agtttctgcc gcgcatcatc ggacgggcgg
    23641 cttttgccaa tgcgggcagg ctgtatgcgg aaatttcgtg tgcggtgttg aacgcttcgc
    23701 ggctgatgct gtcgaggaag tcgccgctca aggcttcttt cggcgcaaaa ccgatggaat
    23761 gcaccaaacc gtccaagccg tcccaatgtt tgcccaaatc ggcgaacact tggttgattt
    23821 cgtcgtcgct ggcgacatcg cagcggaaca cgagttcgga atccaattcc gccgccattt
    23881 tgcggacgcg ctcttccagt ttgtccacaa cgtaggtaaa cgccagttcc gcgccttgtt
    23941 cgcggcaggc tttggcgatg ccgtaagcga tggaacgctc ggaaatcatg ccggtaatca
    24001 gaattttttt gccttgcaga aaacccattt tgtatccttc aaatagtgtt cggttcgttc
    24061 taaaccgttg attatagcaa attgtccctg tttctgtgtt ttcacgttgc agcatgcaaa
    24121 cggcaatgcc gtccgaagcg gatttcagac ggcatcggac gtttcaaata cggtttaagg
    24181 catcagatgc cgcgcaacaa ttcgttcacg ctggttttcg cacgggtttg cgcgtccacg
    24241 cgtttgacga tgacggcgca gtaaaggctg tggctgccgt ctttggaagg catactgccg
    24301 gacacgacga ccgaaccggc cggtacgcgg ccttggtaga tttcgccggt ggtgcggtcg
    24361 aagattttgg tggattgacc gatgaacacg cccatcgaaa tcacgctgcc ttcttcgaca
    24421 atcacgccct caacgatttc agaacgcgca ccgatgaagc agttgtcttc aataatggtc
    24481 gggctggctt gcaggggttc gagtacgccg ccgatgccga caccgccgct caagtggacg
    24541 tttttgccga tttgcgcgca agagccgacg gtcgcccaag tatcgaccat cgcaccttcg
    24601 tcaacgtatg cgccgatgtt gacgtaagac ggcatcagca cgacattttt cgccacaaag
    24661 ctgccgcgtc gggcaaccgc acccggaacg gcgcggaagc ctgcgttttt gaactcgtct
    24721 tcagaccagt cggcaaactt ggtcggcact ttgtcgaagt atttgttcac accgtcgttg
    24781 aggatttcgt tgtcttggat gcggaaggac agcaacacgg cttttttcgc ccattcgtta
    24841 actttccatt cgcccacgcc caagcgttcg gcgacgcgca gtttgccgga atcgagttgg
    24901 cggatggttt ccaacacggc ttctttaact tcgggagtaa cggtggtcgg attaatgtcc
    24961 gcgcggtttt caaaggcggt ttcgataatg ttttgcaaag acataatgtt tccttatgtg
    25021 agatgtttcg tgggacgctt gccggtattt tcaagcagta tgttcatttg aaatgaatgc
    25081 gctattgtgc cacgcaaacg catattcgtc agcaatacgc gggcggttgc cgaacattgg
    25141 cgtttcggaa tcgggcgggc ggcagtacct ttatgccgca ccgccgcctt tcagacggca
    25201 ttcgcggtaa aacgccatca gcccttcggt cgaggcatcg tgtacggacg tgccgccttc
    25261 cagttcgccg atgatggttt tcgccaactg tttgccgtat tccacccccc actgatcgaa
    25321 ggggttgacg ttccatatcg cgccttggac gaaggttttg tgttcgtaag ccgccatcag
    25381 catacccaaa ttgtagggcg tgaggcggtc gagcaggatg ctgttgctgg ggcggttgcc
    25441 agggaactct ttgtgcggcg caaggcgttc gcgttccgct tcgggcaaat ctgccagttc
    25501 ggcgcgtgct tcgtccaagg ttttgccctt catcagggct tccgcttggg caaaggcgtt
    25561 ggcaacggta aaacggctgc gtccgtcctc cacgccctgc gccgtcaccg ggacgataaa
    25621 gtcgcaggga atcaggcgcg tgccttgatg aagcagttgg aaataggcgt gctggcagtt
    25681 gaccccttca ccgccgaaca cgatgccgcc cgttttgcac acggcgggac tgccgtctga
    25741 agcgcggctt ttgcccaaac tctccatatc gagttggttc agccacgccg gcagcaggcg
    25801 caggttgtgg ctgtacggaa cggcggtctg cccgtccgcg tgttggaaat tgttatacca
    25861 cacggcaatc agtgccatca gaacgggaat gttgcggcgc ggcggcgtgt ggaaaaaatg
    25921 gctgtccatc gcgtgcgccc ccgccaacaa ctcgcggaaa cgcgccccgc cgaccgcaac
    25981 catcacgggc aaaccgacgg gcgaccagac ggaatagcgt ccgcccaccc agtcgtacat
    26041 cgcaaacacg cgttccgccg caatgccgaa actttgcgcc gcttccgtat cggcagatac
    26101 cgcgcaaaaa tgacatcccg tttccgattc cgagaacccc gcaccacgat accaagcctt
    26161 gaccgcctct gcattgagca gggtttcagg cgttttgaag gacttgctgg caacgcaaaa
    26221 cactgtcgtt tcggggttca gacggcataa aaccgcatcc aggcaggcag gatcggcgtt
    26281 ggcggcaaaa tggacggcga tatgccgtct gaacggctca agtgcctgca cgcacattgc
    26341 cggcccgagg tcggatccgc ctatgccgat gtggacaaaa tccgtaatcc gtttcccagt
    26401 tatcccctga tacgaaccgt cgtccaaact gtgtgcaaac tccaacgcac gatttaactc
    26461 gcggcggatt tcgggcaaca cgtccctgcc gtccacataa acggcatccg caccgtcggg
    26521 caggcgcaaa gccgtatgca gcgcggcacg cccctcgctg ccgttgactt tcgcacccgt
    26581 ccgcaaagca cgcattttcc cttccaaatc cgccgtctcc gcaagacggc agagcagttg
    26641 cagcgtatct tcgcccaaac ggtttttgct gtaatcgaac aacatcccgt ccaaacgctc
    26701 atgcatacgc tcaaaacggt cgggttcgca ggcaaagcgg tcgcgcaaaa ggacatgacg
    26761 cgtatcctga taatggcgtt cgagcgcata ccatgcacgg gtaaaagcat tcatctgttt
    26821 tccttgattt ttcagaaccg gattaaaatg tagcagaatg tagtttaaca aacggcagcg
    26881 gctttggcga atctccagaa caccgcccgc cgcgtccaat agcaccttat ttccatatgg
    26941 cggaaatgcc ctccggccgg catttgaccc gcaacaatat cctgcaagat ttattgtgta
    27001 cgcataaatg ccggacagcc gcctaaataa ggtataatcg catccgattc tgtcccgttt
    27061 gccgcccgca ggcgggatgt cggtggtttt catcttaccg ggaacacgcc ggtactgttt
    27121 tttaacgatg tttcttacat tttattccaa ttactttacg gggctagaat atggctaaaa
    27181 acggaggatt ttctttgttc gcaaagaaag aaaaacgctt tatctttgaa ggcaggcatt
    27241 ccgcctccga caaactggtc aacggcgaag tatccgcgtt taccgaagaa gaggcgcgca
    27301 aaaaactggc aaaacgcggc atccgcccgt tgcagattac tcgtgtgaaa acaagctcca
    27361 agcgcaaaat cacacaagaa gacatcaccg ttttcacccg ccagctgtcc acgatgatta
    27421 aagcgggcct gccgctgatg caggcatttg aaatcgtggc gcgcggacac ggcaacccgt
    27481 ctatgacgga aatgctgatg gaaatccgag gcgaagtgga acagggcagc tcgttgagcc
    27541 gcgcattctc aaaccacccg aaatatttcg accgcttcta ctgcaacctg gttgcggcag
    27601 gcgaaacggg cggcgtattg gaaagcctgc tggacaaatt ggcaatttac aaagaaaaaa
    27661 cccaggctat ccgcaaaaag gtaaaaaccg cactgaccta tccggtatcc gtcatcgccg
    27721 tcgccatcgg tttggtattc gtgatgatga ttttcgtact gcccgccttt aaagaagttt
    27781 acgccaatat gggcgcggag cttcccgcac tgacccaaac agtgatggat atgtccgact
    27841 ttttcgtctc atacggctgg atggtgctga tcgcactggg ctttgccata tacggcttcc
    27901 ttaaattgaa ggcgcgttcg attaaaatcc aacggcgtat ggatgccata ctgctgcgta
    27961 tgccgatttt cggagacatt gtccgcaaag ggacgattgc ccgctggggc aggacgacag
    28021 cgacgctgat tgcggcaggc gtgcctttgg tcgatgtatt ggactccact gccggcgcgg
    28081 cgggcaattt aatctatgaa gaagccaccc gggaaatccg tacgcgcgtc atccaaggtt
    28141 tgtctatgac ttcggggatg cgtgcgacgg aactgttccc caatatgatg ttgcagatgt
    28201 cttccatcgg cgaggaatcg ggttctttgg acgatatgct caacaaagcc gccgaatttt
    28261 acgaagacga ggtggacaat gcggtcggca ggctgtccgc tatgatggag ccgatcatta
    28321 tcgtgatttt aggcttggtc atcggcacgc ttctggtcgc catgtatctg ccgctgttta
    28381 atttgggcaa cgtggtcgcc tgatttgccg cacagatccg gcgcggattc gctctgcgcc
    28441 ggtttgtttt tgttttgaat acattgagaa caaaatatgt ctgatttgtc tgtattgtcg
    28501 ccgtttgccg tgcctttggc agcggtgttc gggctgctgg tcggaagttt cttaaacgtc
    28561 gtcatttacc gcgtgccggt catgatggaa cgcggctgga cggtatttgc caaagaatat
    28621 ttaaacctgc cgctgaccga agaggaaagc cgtaccttca acctgatgaa accggattcc
    28681 tgctgtccca aatgccgcgt gccgatacgc gcgtggcaga acatcccgat tgtcagctac
    28741 ctgctcctgc gcggcaaatg cgcttcctgc caaaccaaaa tcagcatacg ttatccctta
    28801 atcgagctgc tgaccggcgt attgttcggg ctggttgcct ggcaatacgg ctggtcttgg
    28861 attacattgg gcggtttgat actgaccgcg tttctgattt ccctgacctt tatcgatgcg
    28921 gacacccaat acctgcccga ctcgatgaca ctgcccttga tttggctggg gctgatattt
    28981 aatttggacg gcggcttcgt gcctttgcag tctgccgttt taggtgcggt tgccggctat
    29041 ggttcgatat ggcttttatg cgcggtatat aaactgatta aaggcgaaat cggtatgggc
    29101 aacggagatt tcaaactgat tgccgcattg ggcgcgtggc tcggcatatc cgcattgccc
    29161 gtgctgattt ttgtttcctc gctgatcggt ttggtcgcgg caatcgttat gcgcgtcgcc
    29221 aaggggcagc attttgcctt cggccccgca ctgacagttt cgggctggat aatttttacg
    29281 gcaaacgatt ccgtatggcg ggcggtcaac tggtggctga cccatccggt gctgtaagat
    29341 gacggtatgg gtcgggctga ccggcggaat cggcagcggc aaatcggcag ccgcgcaatg
    29401 ttttgccgat ttgggcgtac cgcgtatcga tgcggatgcg gcggcgcact cgctgacggc
    29461 ttcagacggc atcgccctgc cggaaatcag gcggctgttc ggcgacaccg ttttcgacac
    29521 acagggtttg ttgcggcgcg acatattgcg taaagaaatc tttgcctccc catcgcgaaa
    29581 agccttgctc gaatccgtga tgttgccgct gattttctca gaaatcaaaa aacagcaaga
    29641 aacctttacc gatgcggctt acggcattgt cgaaattccg ctgctgacgg aaaagcgtca
    29701 atttatcagc ctgatacggc gtgtcctgac cataagtgcc cctgtggaaa aacgtatcgg
    29761 cagggtgatg gcccgcagcg ggctgacgcg cggcgaggtg gcggccgtca tcagccatca
    29821 ggcatccgaa tccgaacgcc tgctgcttgc agacgatgtg ctgctcaatg acggcagcct
    29881 caaaagcctg cgtgagaaaa caatgcgcct gcacgcgttt tattcaggga ttttcgcctc
    29941 aaaaccaaca caaggaaaac acaatgactg aatcgcggca aacacgcctt caagtcaaat
    30001 gtccgacctg tcaaacagca gtagtatgga aacccgaaaa cgcattccgc cccttctgtt
    30061 cgcaacgctg caaactgatc gacttgggcg gatgggcaga cgggaaatat acggtttccg
    30121 gccaaacgga aagtttgccg gaaatatccg aacccgacat ggcataccgc tgaccgcccc
    30181 gccttcccgg caaacaccct gaaagtcaaa tgccgtctga aacaaacacg cttcagacgg
    30241 cattttcatt ctcaaaccta atcgttggta tttgccgtta cctcttccaa tgaagtaatg
    30301 ccctgcataa ctttcaaaat accggcccgg cgcaaatcca ccataccctc cttataggca
    30361 acgtccaaaa tatccacttc cgtaccgttg ttcataatca cacgctgcat ttcttcgctg
    30421 atgggcataa cctcatacac gcccgcacgc cccttataac cctgcccccg gcaacggtcg
    30481 caaccgacgg cgcggtaaag tttccaatct tttgcaaggt cctcatcggt gaagccgact
    30541 tccttcaaag cagaggcaga cgggcgttcc acttcctgtt tgcagctcga acacagcctg
    30601 cgtaaaagac gctgcgccat aatcaggctg accgaactgg caatattaaa cggcgcgaca
    30661 cccatattca gcatacgtga caacgtcgcc ggcgcattat tggtgtgcag ggtggaaaac
    30721 accatatgcc ctgtttgtgc cgccttaatc gcaatatcgg cagtttccaa atcacgaatc
    30781 tcaccgacca taatgatgtc cgggtcctga cgcaggaaag acttcaaagc agcggcaaaa
    30841 gtcaggccct gcttatcatt gacgttaacc tgattgatgc ccggcaggtt aatctcggca
    30901 gggtcttccg ccgttgcaat atttaccgac tccgtattca aaatattcaa acaggtatag
    30961 agcgacaccg tcttacccga acccgtcgga ccggttacca gcaccatccc gtagggacgg
    31021 tgaatcgctt ccaacaacaa ttttttctga aacggctcaa aaccgagctg gtcgatgttc
    31081 aaagacgcgg catcggaatt caaaatccgc atcacgacct tttcgccaaa cagcgtcggc
    31141 aatgtgctga cacggaaatc gacaggcttg ccgccctttt gaaaggtcag ctgcatcctg
    31201 ccgtcctgcg gtatccgttt ttcggaaatg tccaaacgcg acattacctt aatccgggaa
    31261 gcaagctgcc cccttaccgc aatgggcggc tgaaccacct cacggagctg cccgtccaca
    31321 cggaaacgga tacgggcatt gtgttcgtaa aactcgaaat ggatgtccga tgccccgctg
    31381 cgcaaggcat ccgacaaagt cttatggata aacctcggaa cagggccgtc ttctgcctcc
    31441 tcgttgtcga tatacagggt gtggctttcc tcttcctcct gcccctcccc aagctcctga
    31501 agcagcgatg tcgaacgcga acccacccaa tcgagcaaac ccgccaactg gtcatcctcg
    31561 acaatgacca attcaacctc aatccctgcg gcagaaacgg ttttctgaat ttgcggcatc
    31621 tgtgtcggat cggaaaccgc aaaaaatact ttgtcgcccc gacggaaaac cggcacacag
    31681 tggaactcca ccatctgctc ctccgtcaac acccccatca gcaccctgtg gcgcggataa
    31741 tgacgcaaat caagaatcga ataactgaac accctcgcaa tcaatgccgc aagcgacttg
    31801 ggcgaaatga caccgtctga aaacagcatc ggcaacactt ccttacccgc ctgcgactca
    31861 ttgtagtaat gctcggcctg ctcaacagta accacctggt tttgaaccag aatcctcagc
    31921 aaacctacgc tcatacgacc ttatccccaa atttattcat tgttatacct gtacag
//
LOCUS       DAXHPV010000003        30118 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.003, whole genome shotgun sequence.
ACCESSION   DAXHPV010000003 DAXHPV010000000
VERSION     DAXHPV010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 30118)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30118)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30118
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.003"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(161..1534)
                     /locus_tag="ACFM6C_000079"
     CDS             complement(161..1534)
                     /locus_tag="ACFM6C_000079"
                     /inference="COORDINATES: protein motif:HMM:NF014442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HFC6157605.1"
                     /translation="MNADIAVAAGVLKSRLICNFHLLGKTLWQSKKNQLYASLWAGCD
                     ELRGGMDASLYKDYVLTLLFLKYVSDKHKQGGGMIELPAGTTFDDIVKLKNTADIGDR
                     LNKIIAQIAEANDLKGVIDVADFNDEDKLGKAKEMIDRLSRLVGIFEKLNLSSNQAED
                     DDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSKIIGISADCPSSTSVYDPTCGSGSL
                     LLKAAAQAGSQISLYGQEKDVATASLARMKMILHNNETAEINTGTPCPIRLSVMKTTG
                     LRPSILPLPIRLIPPEKNGDYAFLLHLLKSLKPSGKGAIILPHGVLFRGNAEARIRTE
                     LLNLDLIKGIIGLPANLFYGTGIPACIIVIDKEHAQTAQFAEEGTNQVISGGSVFMID
                     ASRGFIKDGNKNRLREQDIHKIIDTFTKQEEIPRYSRMVHLSEIAAQDYNLNLPRYID
                     SGEVEDL"
     gene            complement(1531..2190)
                     /gene="ung"
                     /locus_tag="ACFM6C_000080"
     CDS             complement(1531..2190)
                     /gene="ung"
                     /locus_tag="ACFM6C_000080"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HFC6157606.1"
                     /translation="MDTWHDALGGEKQQPYFQEILNAVRQERLSGQIIYPPAADVFNA
                     FRLTAFDRVKAVILGQDPYHGAGQAHGLAFSVRQGIRIPPSLLNIYKELETDIEGFSI
                     PAHGCLTAWAEQGVLLLNTVLTVRAGQAHSHALLGWERFTDTVIRQLATHRKHLVFML
                     WGGYAQQKRKLIDSQNHLILTAPHPSPLSAYRGFFGCRHFSQANSYLSRHGIDPINWK
                     L"
     gene            2271..2678
                     /locus_tag="ACFM6C_000081"
     CDS             2271..2678
                     /locus_tag="ACFM6C_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HFC6157607.1"
                     /translation="MTVWFVAAVAVLIIELLTGTVYLLVVSAALAGSGIAYGLTGSTP
                     AAVLTAALLSALGIWFVHAKTAVRKVETDSYQDLDAGQYVEILRHTGGNRYEVFYRGT
                     HWQAQNTGQEELEPGTRALIVRKEGNLLIIAKP"
     gene            2693..3640
                     /locus_tag="ACFM6C_000082"
     CDS             2693..3640
                     /locus_tag="ACFM6C_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stomatin-like protein"
                     /protein_id="HFC6157608.1"
                     /translation="MEFFIILLAAVAVFGFKSFVVIPQQEVHVVERLGRFHRALTAGL
                     NILIPFIDRVAYRHSLKEIPLDVPSQVCITRDNTQLTVDGIIYFQVTDPKLASYGSSN
                     YIMAITQLAQTTLRSVIGRMELDKTFEERDEINSTVVAALDEAAGAWGVKVLRYEIKD
                     LVPPQEILRSMQAQITAEREKRARIAESEGRKIEQINLASGQREAEIQQSEGEAQAAV
                     NASNAEKIARINRAKGEAESLRLVAEANAEAIRQIAAALQTQGGADAVNLKIAEQYVA
                     AFNNLAKESNTLIMPANVADIGSLISAGMKIIDSSKTAK"
     gene            complement(3747..4817)
                     /locus_tag="ACFM6C_000083"
     CDS             complement(3747..4817)
                     /locus_tag="ACFM6C_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HFC6157609.1"
                     /translation="MYRRKGRGIKPWMGAGAAFAALVWLVFALGDTLTPFAVAAVLAY
                     VLDPLVEWLQKKGLNRASASMSVMVFSLILLLALLLIIVPMLVGQFNNLASRLPQLIG
                     FMQNTLLPWLKNTIGGYVEIDQASIIAWLQAHTGELSNALKAWFPVLMRQGGNIVSSI
                     GNLLLLPLLLYYFLLDWQRWSCGIAKLVPRRFAGAYTRITGNLNEVLGEFLRGQLLVM
                     LIMGLVYGLGLVLVGLDSGFAIGMLAGILVFVPYLGAFTGLLLATVAALLQFGSWNGI
                     LSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVIFSLMAFGQLMGFVGMLAGLPLAA
                     VTLVLLREGVQKYFAGSFYRGR"
     gene            5002..5277
                     /locus_tag="ACFM6C_000084"
     CDS             5002..5277
                     /locus_tag="ACFM6C_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HFC6157610.1"
                     /translation="MTEQENKTSLIEFPCTFPLKVMGAVHPEFEQAVLDTVRLHAPDT
                     QAHHITTRPSSKGNYTGATVQVKVENQEQLDNIYRALTSHELVKVVL"
     gene            5279..5902
                     /gene="lipB"
                     /locus_tag="ACFM6C_000085"
     CDS             5279..5902
                     /gene="lipB"
                     /locus_tag="ACFM6C_000085"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033819 - lipoyl(octanoyl) transferase
                     activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HFC6157611.1"
                     /translation="MKIIHKGLVEYLPTFEAMKTFNAGRNADTEDELWVVEHPPVFTQ
                     GLVGKPEHLLIRDDIPVVQIDRGGQITYHGPGQLVVYTMIDFKRRKTSVRNIVSALEN
                     SIIATLAEYGIEAAADPKRPGVYVGERKIASLGLRIKNGSVYHGLALNVNMDLSPFTH
                     INPCGYAGMEMTQIADFVQPCPTPDEVAAKLTAHLETQFTPKADNNE"
     gene            5895..6863
                     /gene="lipA"
                     /locus_tag="ACFM6C_000086"
     CDS             5895..6863
                     /gene="lipA"
                     /locus_tag="ACFM6C_000086"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HFC6157612.1"
                     /translation="MSEIKTDDPKRGIKLRGADKTARIPIKVVPLQEKLKKPEWIRAK
                     LPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMIMGDICTRRCPFCDVG
                     HGRPNMLDPDEPKNLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPN
                     TKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLYRKARPGANYQHSLDLLKR
                     YKEMMPHIPTKSGIMVGLGETDEDVREIMRDMRAHNIEMITIGQYLQPSDGHLPVLRY
                     VTPEQFKIFEKEAYELGFSNAAIGAMVRSSYHADEQAAEALRECEF"
     gene            6926..8668
                     /locus_tag="ACFM6C_000087"
     CDS             6926..8668
                     /locus_tag="ACFM6C_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157613.1"
                     /translation="MDQQPVIEIAEFPHDNKLWRIDGLGKIFSQLKNNNNLFIEVYLR
                     PVNFHDNSVYNFAKFDSSGREIPEYNQLKKIPVNIGLLPILRVGSLWIKGKLQNNNAV
                     TDIATLKNIEINANTVEIINSNYKIKYLDSSGREQECKLLLQKNFATDAKVPFSCFKI
                     QNENYKNGIIIPVIEIIRFYYACSTRLAHLTFSNPDEITKISYAIDNETDKVVIKLPQ
                     QYTDQEAFILARILTSNIALSGLFQIKNSLIKIGVNEQPTTLLSTNFPFINPTNLMVR
                     GIKIVDRFLVTEICSCSAPFPDISVDRNNDNRKGDKKTDIPDDKKKEYRRGGQTPSLK
                     GNSTIQNQYESVNCVSTLQFNLNINCFSDLIGKKIEKPQKPFNEYKAQKLAINEKINV
                     TSLGVDLGTWSQTTIVPASISTFNTQSEKQNRDALAATFDNSVRAIEHLNEEYSDIQA
                     TIYMSSSRACEFVPLTDSAHKAQWSYLVSKTKTRRKVLLGKIEYKDKTFWLIEIQARK
                     SEHFVTAIIYFEAIDETKYLTQLLYVLAKQRGIWDKVPKNSSLQIITLKHTHKDIKSY
                     AQKIHKKISNFILK"
     gene            8940..10064
                     /locus_tag="ACFM6C_000088"
     CDS             8940..10064
                     /locus_tag="ACFM6C_000088"
                     /inference="COORDINATES: protein motif:HMM:NF015210.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
                     /protein_id="HFC6157614.1"
                     /translation="MKNRDTPHKKFINPTEYSLFAEEEQYDFELMIENQIKEHEKEID
                     YYVTDYPIETLVAKLDRQELFIPDYQRKNIWEKHRKSRFIESVLIGLPIPFLFFWQDP
                     STGNMEVVDGAQRLTALSEFIHGNLKLSYLEKLIYLNGQTYHQLLESRQKIFKNKPIR
                     GVVLSNKTDKEARLDLFERLNTGSKNATPAEIRRGLLQGAFYDMVETLSEDKTFNELA
                     KISKNMQDMGEREEFITRFFAYGEYLDHYSANVRKFIFDYTEIMNEEFAKNPNMRATY
                     EQKFHEIMAFFKEKYPIGFKRDGKGQSSRTRFEGMAVSAYLAEKENPGILAQVTPKEC
                     VDIFDSKEFIEVTGSDGANATKKLHARLFFAKNAFKRNHP"
     gene            10061..10813
                     /locus_tag="ACFM6C_000089"
     CDS             10061..10813
                     /locus_tag="ACFM6C_000089"
                     /inference="COORDINATES: protein motif:HMM:NF037890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MAE_28990/MAE_18760 family HEPN-like nuclease"
                     /protein_id="HFC6157615.1"
                     /translation="MNSVKSMMESREEEINLYMDLLKYIHDSTQHGLPALQNRNGVEY
                     QLENTHLHILTASIYMLLYNYIEAVVTQSLNTLICYIQNERMPITQFSEPIQKEWLIG
                     GLNLNDAKASVETRLGNGLKMLKHFGDTQKIDIKISKGGGNFNDDEIFKLAKKLQVNM
                     CIDDETHRQLRQAGNITYESTRKFQDTCMKEITRERNKLAHGEITFQECGRNRTISDL
                     MAIKDTTFRYMHLFTDAFTEYLMQKKYLKPTV"
     gene            complement(10797..11819)
                     /locus_tag="ACFM6C_000090"
     CDS             complement(10797..11819)
                     /locus_tag="ACFM6C_000090"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015471943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HFC6157616.1"
                     /translation="MKIEAVDLFCGAGGLTAGLLRAGIKVKAGYDIDAACAYAYEYNN
                     KGAKFILQDVETVTGDQIQAHYSKDAVRLLAGCAPCQPFSTYNQGRDVRNDKKWPLLY
                     AFSRLIHEVQPELVTMENVPDVVKHEVYQDFVNNLKQQGYQVWAEKVLCADYGVPQSR
                     RRHVLLASRIGNIQMVPPTHSNCHVTVRQAIGHLPPLAAGKQDTIDVLHRCSSMSARN
                     LERIRASRPGGTWMDWPEDLRAACHRKKKGQSYKRIYGRMEWDKPAPTMTTLCIGFGN
                     GRFGHPEQDRAISLREAALFQSFPLDYQFTQETDTPIRQISRMIGNAVPVLLGEAIGN
                     SFKLLV"
     gene            complement(11880..12905)
                     /locus_tag="ACFM6C_000091"
     CDS             complement(11880..12905)
                     /locus_tag="ACFM6C_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TniQ family protein"
                     /protein_id="HFC6157617.1"
                     /translation="MILPAHPKPYPDELFTSWLVRLAHANGLKVQTFCHLLFPNYEIW
                     NRDIDRHTPDWLVNTLAEKTGCSTIRIKTTTLDSLQGRLFDKNNFSGQLTWINSLKAN
                     HRKRDNNAIVYCPLCLATDHETYFRKSWRIALYTFCPIHQIMMHDCCPKCGIYIAFHR
                     QDLGKPNLQRFTELKYCWNCQYDLSNSPCENVIFFNDEIRLQWQNWLNQIANLDYLFN
                     QSEKEQLKILHHFLAITTSKKLAPDLYSYLCKQIHQIPVQLERSRRLSWESRSLAERH
                     STIHACLWLIQNFPKNLFKAWQDKAVRYNHLLKDFNDCPQSFQEIILKMNRNVHKELY
                     YSELIYY"
     gene            complement(12902..13795)
                     /locus_tag="ACFM6C_000092"
     CDS             complement(12902..13795)
                     /locus_tag="ACFM6C_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TniB family NTP-binding protein"
                     /protein_id="HFC6157618.1"
                     /translation="MNYPHLSPKAKEQLKYSDIERIEYIRSPRWIGYPQAQQVLVKLE
                     DLLSFPKQNRMPNMLLVGDTNNGKTMLIKHFLRQHPAHDNPHGNGIIAPVVIIQAPPI
                     PDESRFYNAILDLLFAPYKTHDRTDKKLAQVLHLLKYVNTKMLIIDEIHHILSGSLNK
                     QKTFLNVIKYLGNELQIPIVGVGIKDAYRAIQTDAQLANRFEPAVLPRWELNKDFMRL
                     LMSFERMLPLSQPSDLHEISLATKLYGMSEGYIGELSRLLTQAAVAAIQQQTECINET
                     ILNSINWISPSQRKRQLDKLR"
     gene            complement(13792..15654)
                     /locus_tag="ACFM6C_000093"
     CDS             complement(13792..15654)
                     /locus_tag="ACFM6C_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu transposase C-terminal domain-containing
                     protein"
                     /protein_id="HFC6157619.1"
                     /translation="MKATLNVNVGAMVLFQNKICVITAVLELETYQLRDSVTGADYQA
                     KLADLSTVQSAELTHLDSIPEQKWQLAQQHFYVIEPLIRNPKRSKSDVQARAAECGVH
                     ISTVYRWLKSYKESGVLTALTRKQRSDSGKTQLSDDVEQLIRQVLEVDYLSTQRKSIQ
                     KIIREITRRCHKQNLPAPHANTIRSRIKNIAPQIKIAKRLSHKAAEMKFSPLQGSFPN
                     ADYPLSVVQIDHTKLDIILVDDIYRKPIGRPWITLAIDVFSRMVTGFYVSFDPPSALS
                     TGLCLAHSILSKESWLAKHGVKGRWPVWGLPRKIHLDNAKEFRGKVLEKACKQYGIEI
                     EWRPVARPHFGGHIERLLGTILDEVHGLTGTTFANTQQRKDYASESKAALTLTEFETW
                     LTLFICDVYHQRTHSGLGISPLAKWKSGVLGDDVSLGTGLPDKVVDETLLRLTFMPFE
                     MRTVQQYGVVIHKITYWHDVLRPWIAATNPTNPRQARQFIFRIDPRDLSVIWFYDPDL
                     SMYFPIPYRNSSNPVISIWELREIQRQLKNEQKQNIDENMIFTAYGRMRELEQQAQGK
                     TKAIRRAQQRRQLDQRTRASLPMPQIDSRNIISSENEENMFDDIQPFDDLDDLS"
     gene            complement(15651..16298)
                     /locus_tag="ACFM6C_000094"
     CDS             complement(15651..16298)
                     /locus_tag="ACFM6C_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heteromeric transposase endonuclease subunit
                     TnsA"
                     /protein_id="HFC6157620.1"
                     /translation="MPIRKIPKNYRNITGIAPYNKAIGIAAYESSLERDFLTLLEFDS
                     NVQHFEVQPITIEWFDPAGKKHIYTPDVLVHYQNDVIIYEVKYRSDLRKNWCELKPKF
                     QAALHFCKLHGWHFKLITELEIHTDYLCNVRFLLPYQQNGLSGEYSEAYMTLLDESLR
                     ELKKSTPKQLIQQTFQDEYNQAKLLPVLWYLIAERKIGADLNQPLTMQSAIWFKK"
     gene            16510..16668
                     /locus_tag="ACFM6C_000095"
     CDS             16510..16668
                     /locus_tag="ACFM6C_000095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157621.1"
                     /translation="MEFTAKATAVAGIIKPGTPRQSEERFPAPAAPFDVNNINLNCPC
                     RLKALQTA"
     gene            17021..17485
                     /gene="bfr"
                     /locus_tag="ACFM6C_000096"
     CDS             17021..17485
                     /gene="bfr"
                     /locus_tag="ACFM6C_000096"
                     /EC_number="1.16.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004322 - ferroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_process: GO:0006879 - intracellular iron ion
                     homeostasis [Evidence IEA];
                     GO_process: GO:0006880 - intracellular sequestering of
                     iron ion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HFC6157622.1"
                     /translation="MQGNQAVLDYMNELLSGELAARDQYFIHSRLYSEWGYTKLFERL
                     NHEMEEETTHAEDFIRRILMLGGTPKMVRAELNIGTDVVSCLKADLQTEYEVRDALKK
                     GIKLCEEAQDYVTRDLMVAQLKDTEEDHAHWLEQQLRLIELIGEGNYYQSQL"
     gene            17513..17986
                     /gene="bfr"
                     /locus_tag="ACFM6C_000097"
     CDS             17513..17986
                     /gene="bfr"
                     /locus_tag="ACFM6C_000097"
                     /EC_number="1.16.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004322 - ferroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_process: GO:0006879 - intracellular iron ion
                     homeostasis [Evidence IEA];
                     GO_process: GO:0006880 - intracellular sequestering of
                     iron ion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HFC6157623.1"
                     /translation="MKGDRLVIRELNKNLGLLLITINQYFLHARILKNWGFKELGEHF
                     FKQSIVEMKAADDLIERILFLEGLPNLQELGKLLIGESTEEIIACDLTKEQEKHEALL
                     AAIATAEAQQDYVSRDLLEKQKDTNEEHIDWLETQQELIGKIGLPNYLQTAAQED"
     gene            complement(18026..18325)
                     /locus_tag="ACFM6C_000098"
     CDS             complement(18026..18325)
                     /locus_tag="ACFM6C_000098"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157624.1"
                     /translation="MLPIICFRMNVKVKHLLLRILLHIKAKKKGWRQPHPNTHTHQEE
                     RGKIKTDWETANKQSRFHIGIIKQKPLSSIDSNQFRFDSQTGKEKRHTRLYGYAV"
     gene            18312..18632
                     /locus_tag="ACFM6C_000099"
     CDS             18312..18632
                     /locus_tag="ACFM6C_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6157625.1"
                     /translation="MMGNKLTLPAELPAEQDLRAVLAYNMRLFRVNKGWSQEELARQC
                     GLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQERLNLMTNSADTRQMPS
                     ESGI"
     gene            18681..21239
                     /gene="glnD"
                     /locus_tag="ACFM6C_000100"
     CDS             18681..21239
                     /gene="glnD"
                     /locus_tag="ACFM6C_000100"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008773 - [protein-PII]
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0018177 - protein uridylylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="[protein-PII] uridylyltransferase"
                     /protein_id="HFC6157626.1"
                     /translation="MPANLSSALETFKQQRDAAEAHYLKAKRVSVFFREYTAAVETLL
                     AALWVEHFQNSALCLMAVGGFGRGELYPCSDVDLAVVSPAPLSDGIQEQIARFVQTLW
                     DCKLMPSVKSGGIGELCESVRDDITGDTAFLEARFLFGNRQTADKLAEKMNAQRNVAA
                     FVEAKLVEMEHRHAKSQGSGAVLEPNIKSCPGGLRDIHTLLWIAKAQGLATDLPDLLK
                     QRILTRAEAGMLSHGYRRLAHIRIHLHLNANRAEDRLLFDLQPQVAESMGYEGLNLRR
                     QSEELMRVFYRAIKTVKQLGGILTPMLQSRVSSTPLRVTLRIDDDYIQVNNQIAARHT
                     DIFFRRPEHIFKIVEIMQQRNDITALEPQTLRAWWGATRKINRSFYQNSENRHRFAGF
                     FRNGNGLTQTLRFLNLYGVLGRYLPAWEKIVGLLQHDLFHIYPVDDHILAVVRNVRRL
                     ALDMHSHELPYASALMQSFEKQDILYLAAFFHDIAKGRGGDHAIQGIADARQFAADHF
                     LTGEESDLLAWLVENHLLMSAVAQKEDIQDPDVLDAFCKRVQTHERLSALYLLTISDI
                     RGTNPKLWNAWRASLLESLFHAAGRYLTGNGGNPHTLFGRRRQEAADLLTRAAVPEKQ
                     QKKLWNALGSAYFARHQSREILWHAANLVHDFETPIVRSRILPKSDSFQVMVFMPNGP
                     RLFARLCRIFSRHGFDILAARAFITEHDYILDTFIVQIPSQHAPEDYPDIQSALEAEL
                     NSFIHGHTVAEISSHSRRISRRSRYMPIAPSITITPEEDYPDWYSVEITAVNRPFLLA
                     DMAEVFFAHNVSLRYAKISTLDERAEDSFTVFSPDLKNPKIQSSLKQALLEQLT"
     gene            21386..22849
                     /gene="guaB"
                     /locus_tag="ACFM6C_000101"
     CDS             21386..22849
                     /gene="guaB"
                     /locus_tag="ACFM6C_000101"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003767939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HFC6157627.1"
                     /translation="MRIVEKAYTFDDVLLVPAHSTVLPRDVKLQTKLTREIILNLPLL
                     SAAMDTVTEARLAISMAQEGGIGIIHKNMPPEMQARAVSKVKRHESGVVKDPVTVAPT
                     TLIREVLEMRAQRKRKMSGLPVVENGKVVGIVTNRDLRFENRVDLPVSAIMTPRERLV
                     TVPEGTSIDEARELMHTHKVERVLVLNEKDELKGLITVKDILKTTEFPNANKDSEGRL
                     RVGAAVGTGGDTEERVKALVEAGVDVIVVDTAHGHSQGVIDRVRWVKETYPHIQVIGG
                     NIATAKAALDLVAAGADAVKVGIGPGSICTTRIVAGVGVPQLTAIHNVAEALKGTGVP
                     LIADGGIRFSGDIAKALAAGAYSVMLGGMFAGTEEAPGEIELYQGRSYKSYRGMGSLG
                     AMSQGSADRYFQDKTDSTDKYVPEGIEGRVPYKGPIVNIIHQLTGGLRSSMGYLGCAN
                     IAEMHEKAEFVEITSAGMSESHVHDVQITKEAPNYHR"
     gene            complement(23187..25562)
                     /gene="rnr"
                     /locus_tag="ACFM6C_000102"
     CDS             complement(23187..25562)
                     /gene="rnr"
                     /locus_tag="ACFM6C_000102"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HFC6157628.1"
                     /translation="MNKNIKSLNLREKDPFLSREKQRYEHPLPSREWIIELLERKGVP
                     SKIESLARELSITEDEYVFFERRLKAMARDGQVLINRRGAVCAADKLDLVKCRVEAHK
                     DGFGFAVPLTPAKDGDFVLYERQMRGIMHGDIVIVRPAGMDRRGRREGTVLDIVERAQ
                     SKVVGRFYMDRGVAILEPEDKRLNQSIVLEPDGVARFKPESGQVIVGEIEVYPEQNRP
                     AVAKIIEVLGDYADSGMEIEIAVRKHHLPHQFSEACAKAVKKIPDHVRKSDLKGRVDL
                     RDLPLVTIDGETARDFDDAVFAEKIGRNYRLVVAIADVSHYVRPDDAIDTDAQERSTS
                     VYFPRRVIPMLPENLSNGICSLNPNVERLCMVCDMVITYAGNIKEYRFYPAVMRSHAR
                     LTYNQVWKWLSGGIGHPFKAQIDTLYKLFKILQKKRFERGAVEFDSIETQMLFDDNGK
                     IEKIVPVVRNDAHKLIEECMLAANVCAADFLLKNKHTALFRNHLGPTPEKLAALREQF
                     GLLGLQLGGGDNPSPKDYAALAGQFKGRPDAELLQVMMLRSMQQAVYEPHCDGHFGLA
                     YEAYAHFTSPIRRYPDLTVHRAIKAVLNQQTYTPKKSWQALGVHTSFCERRADDASRD
                     VENWLKTYYMRDKVGEIFEGKISGVANFGIFVTLDDIHIDGLVHISDLGEDYFNFRPE
                     IMAIEGERSGIRFNMGDRVAIKVARADLDDGKIDFVLIAEGSGRGRKVKSSASAKPAG
                     TAGKGKPKTAAGKKTARGGKVRGRGASAAAESGKKAKKPVPIKVKKRKGKS"
     gene            25651..25737
                     /locus_tag="ACFM6C_000103"
     tRNA            25651..25737
                     /locus_tag="ACFM6C_000103"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:25685..25687,aa:Leu,seq:cag)
     gene            25773..25859
                     /locus_tag="ACFM6C_000104"
     tRNA            25773..25859
                     /locus_tag="ACFM6C_000104"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:25807..25809,aa:Leu,seq:cag)
     gene            25898..25988
                     /locus_tag="ACFM6C_000105"
     tRNA            25898..25988
                     /locus_tag="ACFM6C_000105"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:25932..25934,aa:Ser,seq:gga)
     gene            complement(26387..28198)
                     /gene="typA"
                     /locus_tag="ACFM6C_000106"
     CDS             complement(26387..28198)
                     /gene="typA"
                     /locus_tag="ACFM6C_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HFC6157629.1"
                     /translation="MKQIRNIAIIAHVDHGKTTLVDQLLRQSGTFRANQQVDERVMDS
                     NDLEKERGITILAKNTAIDYEGYHINIVDTPGHADFGGEVERVLGMVDCVVLLVDAQE
                     GPMPQTRFVTKKALALGLKPIVVINKIDKPSARPSWVIDQTFELFDNLGATDEQLDFP
                     IVYASGLSGFAKLEETDESSDMRPLFDTILKHTPAPSGSADEPLQLQISQLDYDNYTG
                     RLGIGRILNGRIKPGQTVAVMNHEQQIAQGRINQLLGFKGLERVPLEEAEAGDIVIIS
                     GIEDIGIGVTITDKDNPKGLPMLSVDEPTLTMDFMVNTSPLAGTEGKFVTSRQIRDRL
                     QKELLTNVALRVEDTADADVFRVSGRGELHLTILLENMRREGYELAVGKPRVVYRDID
                     GQKCEPYENLTVDVPDDNQGAVMEELGRRRGELTNMESDGNGRTRLEYHIPARGLIGF
                     QGEFMTLTRGVGLMSHVFDDYAPVKPDMPGRHNGVLVSQEQGEAVAYALWNLEDRGRM
                     FVSPNDKIYEGMIIGIHSRDNDLVVNPLKGKKLTNIRASGTDEAVRLTTPIKLTLEGA
                     VEFIDDDELVEITPQSIRLRKRYLSELERRRHFKKLD"
     gene            complement(28316..29206)
                     /locus_tag="ACFM6C_000107"
     CDS             complement(28316..29206)
                     /locus_tag="ACFM6C_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HFC6157630.1"
                     /translation="MFPVFHLSGESRRRMLQTALRFPHVFKARAEDSHKGTFGTLAVV
                     GGSAGMSGAPVLAASAAMYLGCGKVWAGFNQDTLPFAVIAGFPEIMLDTADSLAKRQD
                     INAWVVGCGLGTGRAAVGTLAGILTEHTDKLVLLDADALNILSTDAETRNLARGCKNL
                     ILTPHPAEAARLLGTTVAQVQADRTAAVRKIGAIFGATVVLKGHKTLVAASDTEIYVN
                     ESGNAGLATAGSGDVLGGIIGSLLAQGVPVFEAACAGAWLHGAAADIIKESAGIAAGL
                     LAGEIAPAARWLRNRITEST"
     gene            29270..29926
                     /locus_tag="ACFM6C_000108"
     CDS             29270..29926
                     /locus_tag="ACFM6C_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b/b6 domain-containing protein"
                     /protein_id="HFC6157631.1"
                     /translation="MKNKTKVWDLPTRLFHWLLAASLPFMWYSAKAGGDMLQWHTRVG
                     LFVLFLLVFRLCWGIWGSDTARFSRFVQGWAGIRGYLKNGIPEHIQPGHNPLGALMVV
                     ALLAAVSFQVGTGLFAADENTFSTNGYLNHLVSEHTGSLMRKIHLNFFKLLAVFSAVH
                     IAAVAAYRVFKKKNLVLPMITGFKYIEGKTSIRFAGKAALAAALSVAALAAAAILLLS
                     "
BASE COUNT         8155 a         7596 c         6745 g         7622 t
ORIGIN      
        1 gggaaagatt tgcaatcgat tccgttgtat agtggtaaag cggccatcgt gttcggcaaa
       61 caactcgttt ttcatacggc ctaaaacttg ccaataggct ttcaatgcgt ccatatcgtg
      121 cgcaggtatg ccgccatcca taaagatagg cggcgagatt ttacaggtct tcgacttctc
      181 cgctgtcgat atagcgaggc agattaaggt tgtaatcttg tgctgcgatt tcgcttaaat
      241 gcaccatacg gctgtaacgg ggaatttctt cctgttttgt gaaggtgtcg atgattttgt
      301 gaatgtcttg ttcgcgcaga cggtttttgt tgccgtcttt aataaagccg cgcgatgcgt
      361 caatcataaa cacgctgccg ccgctgataa cttggtttgt tccctcttcg gcaaattggg
      421 cggtttgggc gtgttctttg tcgatgacga tgatgcaggc aggaatgccc gtgccgtaaa
      481 acaggttggc aggcagcccg ataatgcctt taataaggtc aaggttaagc aattccgtgc
      541 gaatgcgcgc ttcggcattg ccgcgaaaca gcacaccgtg cggaagaata atcgcacctt
      601 tgccgcttgg tttcaggctt ttgagcagat gcagcaaaaa ggcgtaatcg ccgttttttt
      661 cgggcgggat aaggcggatt ggcaacggca aaatcgaagg tcttaagccc gtcgttttca
      721 tcacggaaag acgaatcgga caaggtgttc cggtgttgat ttcggcggtt tcgttgttgt
      781 gcaaaatcat tttcatacgg gcaagggacg cggttgccac atctttttcc tgaccgtaaa
      841 ggctgatttg gctgccggct tgggcggcgg ctttgagcaa cagcgaaccc gagccgcagg
      901 tcgggtcata aacgctggtg ctggacgggc aatctgcgct gattccgata atcttcgaga
      961 cttcggcagg cgtgtaaaac tgccctttgg atttgcctga ctcggtcgca aaatggcgca
     1021 tcaggtattc gtaggcatca cctaacaaat cgtcgtcttc ggcttggttg gaagaaaggt
     1081 tgagcttttc aaaaatgcca acaagcctgc tcaaacggtc gatcatctcc ttagctttac
     1141 ccagtttgtc ttcgtcgttg aagtcggcaa cgtcgatcac gccttttaag tcgttggctt
     1201 cggcaatttg ggcgatgatc ttattcaggc gatcgccgat gtcggcggtg tttttgagtt
     1261 tgacgatgtc gtcaaaagtc gtaccggcgg gcagctcaat catgccgccg ccttgcttgt
     1321 gtttgtcgga aacgtatttt aaaaacaata gcgtaagaac atagtcttta taaaggctcg
     1381 catccatacc gccgcgcaac tcgtcgcagc ccgcccaaag tgatgcataa agctgatttt
     1441 tttttgattg ccataaggtt ttgcctaata aatggaaatt acaaatcaaa cgcgatttta
     1501 acacgccggc ggcaacggct atatcggcat tcacagcttc cagtttatcg gatcgatacc
     1561 gtgccggctc aaatagctgt ttgcctgtga aaaatggcgg cagccgaaaa aaccgcgata
     1621 tgccgacaga ggagacggat gcggtgcggt caatatcaaa tggttttgac tgtctatcag
     1681 tttccttttt tgttgtgcat acccacccca cagcataaag acaagatgct tgcggtgtgt
     1741 cgcaagctgc ctgatgacgg tatcggtaaa gcgttcccag cctaaaaggg cgtgcgaatg
     1801 cgcctgtcct gcacgcaccg tcaaaaccgt gttcagaagt aatacgccct gctccgccca
     1861 cgctgtcagg cagccgtgcg cgggtatgga aaagccttcg atgtcggttt ccaattcttt
     1921 gtagatattg agtaaagacg gcggtatgcg gataccctgc cggacggaaa atgccaaacc
     1981 gtgcgcctgc cctgccccgt gatacggatc ttgtccgaga atgacggctt tgacccggtc
     2041 gaacgctgtc aggcggaatg cgttgaacac atccgccgcc ggcggataga tgatttgtcc
     2101 cgacaaacgt tcctgcctga ctgcatttaa aatttcctga aaatacggct gctgtttttc
     2161 gccgccgagt gcatcgtgcc aagtgtccat atctgcccta tcctttcaaa ttcggctata
     2221 ctgctgatat tgcgttattt tgtcaaacga cgcgctttgt ggggaaatgt atgactgtat
     2281 ggtttgttgc cgctgttgcc gtcttaatca tcgaattatt gacgggaacg gtttatcttt
     2341 tggttgtcag cgcggctttg gcgggttcgg gcattgctta cgggctgacc ggcagcacgc
     2401 ctgccgccgt cttgaccgcc gctctgcttt ccgcgctggg tatttggttc gtacacgcca
     2461 aaaccgccgt tagaaaagtt gaaacggatt catatcagga tttggatgcc ggacaatatg
     2521 tcgaaatcct ccgacacaca ggcggcaacc gttacgaagt tttttatcgc ggtacgcact
     2581 ggcaggcgca aaatacgggg caagaagagc ttgaaccagg aacgcgcgcc ctaatcgtcc
     2641 gcaaggaagg caaccttctt atcatcgcaa aaccttaaca ctcggaggaa ttatggaatt
     2701 tttcattatc ttgttggcag ccgttgccgt tttcggtttc aaatcctttg ttgtcatccc
     2761 acaacaggaa gtccacgttg tcgaaaggct cgggcgtttc catcgcgccc tgacggccgg
     2821 tttgaatatt ttgattccct ttatcgaccg cgttgcctac cgccattcgc tgaaagaaat
     2881 ccctttagac gtacccagcc aggtctgcat cacgcgcgac aatacgcagc tgactgttga
     2941 cggcatcatc tatttccaag taaccgaccc caaactcgcc tcatacggtt cgagcaacta
     3001 catcatggca attacccagc ttgcccaaac gacgctgcgt tccgttatcg ggcgtatgga
     3061 gttggacaaa acgtttgaag aacgcgacga aatcaacagt actgttgttg cggctttgga
     3121 cgaggcggcc ggggcttggg gtgtgaaggt tttgcgttat gagattaaag acttggttcc
     3181 gccgcaagaa atccttcgct caatgcaggc gcaaattact gccgaacgcg aaaaacgcgc
     3241 ccgtatcgcc gaatccgaag gtcgtaaaat cgaacaaatc aaccttgcca gtggtcagcg
     3301 cgaagccgaa atccaacaat ccgaaggcga ggctcaggct gcggtcaatg cgtcaaatgc
     3361 cgagaaaatc gcccgcatca accgcgccaa aggtgaagcg gaatccttgc gccttgttgc
     3421 cgaagccaat gccgaagcca tccgtcaaat tgccgccgcc cttcaaaccc aaggcggcgc
     3481 ggatgcggtc aatctgaaga ttgcggaaca atacgtcgcc gcgttcaaca atcttgccaa
     3541 agaaagcaat acgctgatta tgcccgccaa tgttgccgac atcggcagcc tgatttctgc
     3601 cggtatgaaa attatcgaca gcagcaaaac cgccaaataa gccgtgatga aaatgccgtc
     3661 tgaagctctg ttttcggggt tcagacggca tttttattta aacccgggca aggttgtatt
     3721 ccgcttcaaa tatgtttcgg aaccgcctac ctgccccggt aaaaactgcc ggcaaaatat
     3781 ttctgcacgc cctcgcgaag caagaccaag gttacggcgg ccaaaggcaa tccggccaac
     3841 attccgacaa agcccatcag ctgcccgaac gccatcagcg aaaagataac ccaaaacggc
     3901 gacagcccga tacggtctcc cacgattttc ggcgtaatga aaaaactttc gagaaactgt
     3961 cctacggcaa aaaccgccca aaccgatagg atgccgttcc acgaaccgaa ctggagcaag
     4021 gcggcgacgg ttgccagcag cagtcctgta aacgcgccca aatagggaac aaaaaccaaa
     4081 atgccggcaa gcataccgat ggcaaacccc gaatccagcc cgaccagcac caaccccaag
     4141 ccgtaaacca aacccataat cagcatcacc agaagctgcc cgcgcaaaaa ttcgcccaat
     4201 acctcgttca aattgcctgt aatgcgcgta taagcaccgg caaaacgcct cggaaccagt
     4261 ttggcaatgc cgcacgacca ccgctgccaa tccagcagga aatagtaaag cagcaaggga
     4321 agcagcagca ggttgccgat actgctgaca atattgccgc cctgcctcat caaaacggga
     4381 aaccacgcct taagcgcgtt gctcaactct cccgtatgcg cctgaagcca cgcaataata
     4441 gatgcctgat cgatttccac atatccgccg attgtatttt tcaaccacgg cagcagcgtg
     4501 ttctgcataa aaccgattaa ttggggcagg cgcgatgcca aattgttgaa ctgcccgacc
     4561 agcataggga cgataatcaa caataatgcc aacaacaaaa tcaaggaaaa caccatcaca
     4621 gacatcgaag cggatgcacg gttcaaaccc tttttctgca accattcgac caaagggtcc
     4681 aatacatacg ccagcaccgc cgcaaccgca aacggagtca aagtatcgcc gagcgcgaaa
     4741 accagccaaa ccaaggcggc aaacgccgca ccggcaccca tccacggctt gatgccccgc
     4801 cctttcctcc gatacataaa aaccaccctt ctaaaaataa tattgcgcgc cagtatagca
     4861 gaaccgccgc gccgtcaaaa aagcctccgc cttcccgata gcctgttatc gcggtttagg
     4921 ctaaaataac gcacatccga tgccgtctga aaggcaaacc cgccttcaga cggcataccg
     4981 tacacgataa ggcagcacat catgaccgaa caagaaaaca aaacatccct catcgaattt
     5041 ccctgcacct tcccattgaa agtaatgggc gcggtgcatc ctgagttcga gcaggcagta
     5101 ttggacaccg tccgtctcca cgcccctgac acgcaggctc accacattac cacgcgtccg
     5161 agcagcaaag gcaactatac cggcgccacc gtacaggtaa aggttgaaaa ccaagaacaa
     5221 ttggacaaca tctaccgcgc gctgacttcg cacgaactgg tcaaagtggt actttgagat
     5281 gaaaatcata cataaaggtt tggttgaata tctgccgact tttgaggcaa tgaaaacctt
     5341 taatgccgga cgtaatgccg acaccgaaga cgaactctgg gttgtcgagc atccccccgt
     5401 gttcacacaa ggactggtgg gaaaacccga acacctgctg attcgcgacg acattcccgt
     5461 cgtccaaatc gaccggggcg ggcagattac ctatcacggg cccgggcaat tggtcgttta
     5521 tacgatgatt gatttcaaac ggcgcaaaac cagcgtccgc aacatcgttt ccgcgcttga
     5581 aaacagcatc atcgccacat tggcagaata cggcatcgaa gcggcggcag accccaaacg
     5641 ccccggcgtt tatgtcggag aacgcaaaat cgcctcactg gggctgcgta tcaaaaacgg
     5701 ctccgtctat cacgggcttg cgctcaacgt caatatggat ttaagcccgt ttacccacat
     5761 caacccctgc ggctacgccg gtatggaaat gacgcaaatc gcggattttg tccaaccctg
     5821 ccccacgccg gacgaagtcg ccgccaaact taccgcacac cttgaaacac aattcacacc
     5881 gaaagcagac aacaatgagt gaaatcaaaa ccgacgaccc caaacgcggc atcaaactca
     5941 gaggcgcgga caaaaccgcc cgcatcccca tcaaagtcgt cccccttcag gaaaaattaa
     6001 aaaagcccga atggatacgc gccaaacttc catcgcgcaa attctttgaa atcaaagaca
     6061 ttttgcgcga acaaaaaatg cacaccgttt gcgaggaagc ctcctgcccc aacatcggcg
     6121 aatgcttcag caaaggcacg gcgaccttca tgattatggg cgacatctgc acccgccgct
     6181 gcccgttctg cgacgtggga cacggccgcc cgaatatgct cgaccccgac gaaccgaaaa
     6241 acctcgccga atccgtcaaa gccatgaacc tgcgttacgt cgtcatcacc tccgtcgacc
     6301 gcgacgacct gcgcgacggc ggcgcacagc atttcgccga ctgcatcaaa gccatccgcg
     6361 aaaccagccc gaacaccaaa atcgaaatcc tcgtccccga cttccgagga cgcttggaca
     6421 tcgcactcaa aatccttgcc gaaaccccgc ccgacgtgat gaaccacaac ctagaaaccc
     6481 atccgagcct gtacagaaaa gcccgtcccg gtgccaatta tcaacattct ttagacttat
     6541 taaaacgtta taaagaaatg atgccgcaca tcccgaccaa atccggcatc atggtcggct
     6601 tgggcgaaac agacgaagac gtgcgtgaaa ttatgcgcga tatgcgggcg cacaatatcg
     6661 aaatgattac catcggacag tacctccagc cttcagacgg acacctgccc gtcctgcgct
     6721 acgttacgcc cgagcagttc aaaatctttg aaaaagaagc atacgaactg ggcttcagca
     6781 atgccgccat cggcgcgatg gtacgttcca gctaccacgc cgacgaacag gctgccgaag
     6841 ccttacgcga atgtgaattc tgacgctatt tgagactgaa ctacgctatt tgcgacttta
     6901 taacgctaag ttcgactggg caaatatgga tcaacaacca gttattgaaa ttgccgaatt
     6961 cccacatgat aataaattgt ggcgaattga tgggttaggg aagatttttt cccaattgaa
     7021 aaataacaat aacctgttta ttgaagtcta tttacgccca gttaactttc acgataattc
     7081 tgtatataac tttgctaaat ttgatagttc tggtagagaa attccagaat ataatcaatt
     7141 gaaaaagatt cctgttaata taggcttgct tcctatttta agagtgggat ctctttggat
     7201 aaaaggaaaa cttcaaaaca ataatgcagt tacagatata gccactctta aaaatattga
     7261 aataaatgca aatacagtag aaataattaa tagcaattac aaaataaaat atttagattc
     7321 aagcggaaga gaacaagagt gcaaactatt gttgcagaaa aattttgcaa cggatgcaaa
     7381 agtacctttt tcttgcttca aaattcaaaa tgaaaattac aaaaatggaa taattattcc
     7441 agtaatagaa attatccgtt tttactatgc ctgttcaact agactagctc atttaacatt
     7501 ttctaatcca gacgaaatta caaaaatctc atatgcgata gataatgaaa cagacaaggt
     7561 agtcatcaaa ttaccacagc aatatacaga tcaagaagcc tttattttag caagaatatt
     7621 gacttcaaat attgctttat ctggactctt tcagattaaa aattccctaa taaaaatagg
     7681 agttaatgaa caaccaacta cattattatc taccaatttc ccatttatca atccaaccaa
     7741 tttaatggtt cgcggtatta aaattgttga tagattctta gttacggaga tttgttcttg
     7801 ttcggctcct tttcccgata tttctgttga taggaataat gacaatcgaa agggagataa
     7861 aaaaacagat atacctgatg ataaaaagaa agaatatcga agagggggac aaactcctag
     7921 tctcaaggga aattccacta ttcaaaatca atatgaatca gtcaattgcg tatcaacatt
     7981 acaatttaac ttaaacataa attgcttttc agatttgatc ggtaaaaaga ttgaaaaacc
     8041 ccaaaagccc tttaatgaat acaaagcaca gaaacttgcc ataaatgaaa aaattaatgt
     8101 aactagctta ggagtggatt taggtacatg gagccaaact acaattgtgc ctgcgtccat
     8161 tagcactttt aatacccaat ctgaaaaaca aaatagggat gccttagctg cgacttttga
     8221 caattccgta cgtgctattg aacatttgaa tgaagaatat tcagatattc aggcaactat
     8281 ctacatgtct agctctcgag cttgtgagtt tgttccatta actgactcag cccataaagc
     8341 ccaatggtcg tatcttgttt ccaaaaccaa aacaaggcgt aaggtattat taggaaaaat
     8401 tgagtacaaa gataaaacat tttggttgat tgaaattcaa gctcggaaaa gtgagcattt
     8461 tgttacggcg attatttatt ttgaggcaat tgacgagaca aagtatttga ctcaattatt
     8521 atatgtctta gcaaaacagc ggggaatttg ggataaagtt ccaaaaaact ccagtttgca
     8581 aattattact ctaaagcata cgcataaaga tatcaagagc tacgctcaaa aaatacacaa
     8641 aaaaatatca aattttatct taaaataaat tagttagtaa tataactaat ctagttataa
     8701 attaccaaaa tacttcaggc tgatactttt atataaaatt taagttacct actctcttat
     8761 tgataaggct ggtggtgtcg taactactat ataggagtaa tggttcccat ctgctaacat
     8821 aaatgttaag gtaagagtaa attctaaaga cacaaaagaa aacggttctt ttgatatttc
     8881 aaggttatgt ttttaatcta taacataata ttaacaattt ctatttttag gtattcaaaa
     8941 tgaaaaatcg agatactccg cataaaaaat ttatcaaccc tacggaatat agtctatttg
     9001 cagaagaaga acaatatgat tttgaattaa tgattgaaaa tcagataaaa gaacatgaaa
     9061 aagaaattga ttactatgta actgattatc ccatagaaac actagttgct aaattagatc
     9121 gacaagaatt gtttattcca gactaccaga gaaaaaacat ttgggaaaaa catcgtaaaa
     9181 gtaggttcat tgagtctgtt ttaattggct tacctatccc atttttattt ttttggcagg
     9241 atccttcaac tggaaatatg gaagtggtag atggtgcaca acgactaaca gcattgtctg
     9301 aatttattca tggcaattta aaattatcct atttggaaaa gcttatttat cttaatggcc
     9361 aaacttatca ccaactccta gaaagtcgtc aaaagatttt caaaaataaa cctatccgag
     9421 gcgtagtact tagtaataaa acagacaaag aagctcgact tgacttattt gaacgtctta
     9481 atacaggtag caaaaatgct acacctgcag aaattcgtcg aggtctgctt caaggagcat
     9541 tttacgatat ggttgagact ttatctgaag ataaaacatt taatgaatta gcaaaaatta
     9601 gcaagaatat gcaggatatg ggggagcgag aagaattcat tactcgcttt tttgcctatg
     9661 gtgagtattt agaccattat tctgctaatg ttcgtaaatt tatctttgat tatacagaaa
     9721 tcatgaatga agaatttgct aaaaatccaa acatgcgtgc gacttacgaa caaaaattcc
     9781 atgaaattat ggcttttttc aaagaaaaat atccaattgg ttttaaaaga gatggaaagg
     9841 gtcagtcttc tcgtactcgt ttcgaaggca tggctgtttc agcttatctc gctgaaaagg
     9901 aaaatccagg cattttagct caagttaccc caaaggagtg cgttgatatt tttgacagta
     9961 aagaattcat tgaagtaact ggtagtgatg gtgcaaatgc cactaaaaag ctacatgcta
    10021 gattattttt tgctaaaaat gcctttaaac ggaatcatcc atgaactcag taaaatctat
    10081 gatggaaagt cgtgaagagg aaataaacct atatatggat ctgctaaagt atatccatga
    10141 tagtactcaa catggtttac cagctttaca aaatagaaat ggtgttgaat atcaattgga
    10201 aaatactcat ctccatatcc ttaccgctag tatctatatg ttactatata actacattga
    10261 ggctgttgtt acccaaagcc taaatacttt aatttgctat attcaaaatg aaaggatgcc
    10321 tattacccaa ttttcagaac ccatccaaaa agaatggcta ataggagggt taaaccttaa
    10381 tgatgcaaaa gctagtgtag aaacacgatt aggtaatgga ctcaaaatgc ttaaacattt
    10441 cggtgataca caaaaaatag atattaagat ttctaaagga ggaggaaatt ttaatgatga
    10501 cgaaatattt aagcttgcaa agaaacttca agttaatatg tgtatcgatg acgaaactca
    10561 ccgccaatta cggcaagcag gaaatattac ctatgaaagt acgcgcaaat ttcaagatac
    10621 ttgtatgaaa gaaataaccc gtgaacgaaa taaacttgct catggagaaa tcacctttca
    10681 agaatgtggt agaaaccgaa caatatctga tttaatggca ataaaagaca ctactttccg
    10741 ctatatgcat ttatttactg atgcatttac tgaatatcta atgcagaaga aatatctcaa
    10801 accaacagtt taaaactatt tccgattgcc tcacctagca atacaggaac agcattacca
    10861 atcattcgac taatttggcg aattggagta tcagtttctt gagtgaactg gtaatctaga
    10921 ggaaaacttt ggaataaggc tgcctccctt aaagaaattg cacggtcttg ttccggatgc
    10981 ccaaagcgtc cattgccgaa gccaatacat aaagttgtca ttgttggggc gggcttgtcc
    11041 cattccatac gaccataaat tcgtttataa gactgtcctt tttttttgcg atgacatgcg
    11101 gctcgtaaat cttctggcca atccatccat gttcctcctg gacgagaagc acgaatccgt
    11161 tctagattac gagctgacat tgatgaacac cgatgtaata catctatagt atcttgtttg
    11221 cctgctgcca gtggcggcaa gtgtccaata gcctgacgaa ctgttacatg gcaatttgaa
    11281 tgcgttggag gaaccatctg aatattaccg atacgtgatg caagtaatac gtgtctacgt
    11341 cgtgattgag ggactccata atctgcacat aatacttttt cagcccaaac ttggtatccc
    11401 tgttgtttta aattatttac aaaatcttgg tatacctcat gttttacaac atctggcaca
    11461 ttctccatag tcacaagctc tggttgcact tcatgaatca agcgagaaaa agcgtatagt
    11521 aatggccatt ttttgtcatt acgaacatca cgaccttgat tgtaagtaga aaatggctga
    11581 caaggagcac aaccagctaa taatctaact gcatcttttg aatagtgcgc ctgaatctga
    11641 tctccagtaa ctgtttccac atcttgtaat ataaattttg cacctttatt gttatactcg
    11701 tacgcatatg cacaagctgc atcaatatca tatccagctt tcactttaat tcctgctcga
    11761 agtaaacctg ctgtcaaccc acctgctcca caaaataaat ctactgcttc aattttcatt
    11821 tttcaactca tatttttgat ataaggatta tatccttaac tttgattgga gtcgagcttt
    11881 taatagtata taagctctga atagtacagt tccttatgaa cgtttctatt catttttaaa
    11941 attatttcct gaaaactttg ggggcaatca ttaaaatcct tcaataaatg gttataacgg
    12001 acggctttat cttgccatgc tttaaataga ttttttggaa aattttgtat taaccacaaa
    12061 caagcatgaa tagtactgtg tcgttccgcc aaactgcgac tttcccaact cagtcgacga
    12121 gaacgttcta attgaactgg aatctgatgt atttgcttgc acaaataaga gtacaaatcc
    12181 ggtgcaagct tctttgatgt agtaatcgcc aaaaagtgat gcagaatttt tagttgttct
    12241 ttttcagatt ggttaaaaag ataatcaaga ttagcaattt ggtttaacca attttgccat
    12301 tgcagcctga tttcatcatt aaagaaaata acattctcac aaggactgtt gctcaagtca
    12361 tattgacaat tccaacaata tttcaactct gtaaagcgct gcaaattagg tttacctaaa
    12421 tcttgtcggt gaaaagcaat atatatgcca catttaggac agcaatcatg catcatgatt
    12481 tgatgtattg gacaaaatgt atatagggct atgcgccatg attttcggaa atatgtttca
    12541 tggtcagtag ctagacatag cgggcaataa acaatagcat tattatcgcg tttacggtga
    12601 ttggctttaa ggctgtttat ccacgtcaat tgtcctgaaa aattgttttt atcaaataat
    12661 cgaccttgta ggctatctaa tgtggttgtt ttgattcgaa tggttgaaca gcctgttttt
    12721 tcagccaatg tattgaccaa ccagtcagga gtatggcgat ctatatccct attccatatc
    12781 tcataattag gaaatagcaa atgacagaag gtttgtactt tcaacccgtt tgcatgtgct
    12841 aagcgaacca accatgatgt aaacaattca tcaggataag gtttcggatg agcgggtaaa
    12901 atcatctgag tttatccaat tgacgtttac gttggcttgg actaatccag ttgattgaat
    12961 ttaagattgt ttcgttaata cattcagttt gttgttgaat ggcggctaca gcagcttgtg
    13021 tcagcaaacg agaaagctct ccaatatatc cttcactcat gccatataac tttgtagcca
    13081 acgaaatttc atgtaaatcc gacggctgac taagcggcag catccgttca aagctcatca
    13141 ataaacgcat aaaatcctta tttaattccc aacgaggaag caccgcaggt tcaaaacggt
    13201 tggccaactg tgcatcagtt tgaatggctc gatatgcgtc tttaatacct acacctacaa
    13261 tcggaatttg taattcattt cctaagtatt taattacatt taaaaacgtt ttctgcttat
    13321 tcaaactccc ggaaaggata tggtggattt catcaataat caacatttta gtattaacgt
    13381 atttgagcaa atgaagcact tgggcaagtt ttttatctgt cctgtcatga gttttatagg
    13441 gggcaaacag taaatctaaa atagcattgt aaaaacggct ttcatcaggt ataggcggtg
    13501 cttgaataat cactactggt gcgataatac catttccatg tggattatca tgggctggat
    13561 gttgccgcaa aaaatgttta atcaacatgg ttttaccgtt attagtatca ccaaccaaca
    13621 acatattagg catacggttt tgtttcggga aacttagcaa atcttccagt tttaccaaaa
    13681 cctgttgagc ctgcggataa cctatccaac gaggggaacg tatgtattcg atgcgctcaa
    13741 tatcgctata ctttagttgt tcttttgctt tgggagaaag gtgaggataa ttcatgataa
    13801 atcgtccaaa tcatcaaaag gctgaatatc atcaaacata ttttcctcat tttcagacga
    13861 tataatattc ctcgaatcaa tttgaggcat aggtaaagat gctcgagtac gttgatctaa
    13921 ttggcgacgt tgttgagcgc gacggatagc tttagtctta ccttgagctt gctgttccaa
    13981 ttctcgcatt cgtccgtatg ctgtaaaaat catgttctca tcaatattct gtttctgctc
    14041 attttttaat tgtctctgaa tctctcgtaa ctcccaaatg ctgataactg gattcgaact
    14101 gttccgataa ggtattggaa aatacatcga taaatctggg tcataaaacc aaatcacgct
    14161 taaatcacgt ggatctatgc gaaaaatgaa ctggcgagcc tgtctaggat tagtcggatt
    14221 agttgctgca atccatggtc gtaaaacgtc atgccaataa gtgattttat ggataactac
    14281 cccatattgc tgcaccgttc gcatttcaaa cggcataaag gtcaagcgca atagtgtctc
    14341 atcaaccact ttatcaggta atcctgttcc taaagaaaca tcatctccta atacacctga
    14401 tttccatttg gctaacggtg agatccccaa tccagaatga gtacgctgat gataaacatc
    14461 acaaataaat agtgttaacc acgtttcaaa ttcagttagc gttaatgccg ccttgctttc
    14521 ggaagcataa tcttttctct gttgtgtatt tgcaaaagta gtaccagtta aaccgtggac
    14581 ttcatccaaa atcgtaccta gtaaacgctc aatgtgtcct ccgaaatgag gacgtgccac
    14641 aggcctccac tcaatttcaa taccgtattg tttacacgcc ttttccagca ctttgccacg
    14701 gaattctttt gcattatcca aatgaatttt gcgtggcaaa ccccacacag gccaccgccc
    14761 tttcactcca tgttttgcca accagctttc cttagacaaa atactatgtg ctaaacacaa
    14821 acctgtagat aatgcacttg gtggatcgaa tgacacataa aatcccgtaa ccattcgact
    14881 gaacacatca atcgccagcg taatccacgg cctaccaata ggcttacgat atatatcgtc
    14941 aactaaaata atgtctaact ttgtatgatc tatttgtacc actgaaagcg gataatcggc
    15001 atttggaaag ctaccttgta aaggagaaaa tttcatttct gctgctttat ggcttagtcg
    15061 tttagcaatt ttaatttgag gcgcaatatt tttgattcga gaacgaatgg tattagcatg
    15121 aggagctggt aaattttgtt tatggcaacg ccgtgtaatt tctctaatga ttttctgtat
    15181 tgatttacgt tgtgtgctta aataatccac ttccaatact tgcctgataa gctgttctac
    15241 atcatcagaa agctgtgttt taccactatc actacgctgc ttacgtgtta aagcagtcag
    15301 aacgccgctt tccttataac tttttaacca gcgataaacc gtactgatat gtacaccgca
    15361 ttcggcagct ctcgcttgaa catcagattt actacgtttt ggatttcgga taagtggctc
    15421 aattacatag aaatgttgtt gagctaattg ccatttttgc tcaggaatac tatctaagtg
    15481 ggttaattca gcactctgga ctgttgatag atccgctaat tttgcttggt aatctgcacc
    15541 ggttacacta tcgcgtaact gatatgtttc taactccagg actgctgtaa ttacacagat
    15601 tttgttttga aacaaaacca ttgcaccgac attcacattt aaagttgctt tcatttttta
    15661 aaccatatag cggattgcat agtgagtggt tgatttaaat ctgcgccaat ttttcgttct
    15721 gcaattaagt accacaatac aggcaataat tttgcttgat tgtattcatc ctgaaaagtc
    15781 tgttgaataa gctgtttagg tgtggatttt ttcaattcgc gtaacgattc atccaataaa
    15841 gtcatatatg cttcgctgta ttcgccagat aagccatttt gttgatatgg caataaaaag
    15901 cgtacattgc ataaataatc agtatgaatc tctaactctg taatcagttt aaaatgccaa
    15961 ccgtgtaatt tgcaaaaatg taaggcagcc tgaaatttag gtttgagttc acaccagttt
    16021 ttacgtaaat cgctacgata ttttacttcg taaataatta catcattttg ataatgaacc
    16081 aaaacatcag gggtatagat atgcttcttt cctgctgggt caaaccactc aatcgtgata
    16141 ggctgtactt cgaaatgctg cacattagaa tcaaattcca gcagagttaa aaaatcacgc
    16201 tccaaagatg actcataagc tgcaatgcct atagctttgt tatatggagc gatgcctgta
    16261 atatttcgat agtttttagg aattttacgg attggcatag ttttatatgt gtagtagaaa
    16321 aaggattaaa aggaagacaa tcttaatgag ttaatgccct ttatcaataa cccaaactca
    16381 attagctttc tcataattta gtctcaaata acaatattat tttcaaatct taatgcaaaa
    16441 tttttgctct cagtcgcaaa taacgttatt agaagtataa gattttgcat attctagtcg
    16501 caaacaacgt tggaattcac agcgaaagcc acggcggttg cgggcatcat taaacccgga
    16561 acaccgcgcc aaagtgaaga acgattccct gcgcctgccg cgccgtttga tgtaaacaac
    16621 atcaatttga attgtccatg ccgtctgaaa gcccttcaga cggcatgatt tattcccaaa
    16681 atccgataat ctcaaaagaa tctgtcagtt aatgagaacg attcattata aattttgata
    16741 aaaaaccgtg ctctatttgt tttttgctat ggttaataag tgtaaatgtt ctttattgat
    16801 gagatggatt cttagtttta gcagcaaaaa aaaacgataa gaaacagagc attgatttgg
    16861 aaggcatcgg ggaatacgcc ctatttcttt tgataattgt ttgtatttta aatagaaaat
    16921 ttgtcatgcc gacagctttt gcatacaatg cacgcatccc gaacagtgct tcatccactg
    16981 tttaaccaca cgaaacccaa attaagaaaa gagaaatatt atgcaaggca atcaagcagt
    17041 tttagattac atgaacgaat tgctgtccgg tgagctggca gcacgcgacc aatacttcat
    17101 ccactcccgt ctctactccg aatggggcta caccaaactt tttgaacgtc tcaatcacga
    17161 gatggaagaa gaaaccacac acgccgaaga ctttatccgc cgcatcctga tgctgggcgg
    17221 tacgccgaaa atggtacgcg ccgaactgaa tatcggcacg gacgtggttt cctgcctcaa
    17281 agccgacctg caaaccgaat atgaagtacg tgatgcgttg aaaaaaggca tcaaactgtg
    17341 cgaagaggct caagactatg ttacgcgcga cctgatggtt gcccaactga aagataccga
    17401 agaagaccac gcacactggt tggaacagca gctgcgcctg atcgagctga ttggcgaagg
    17461 caactactac caaagccaac tgtaagctgt attcggaata aaaggagtcc gtatgaaagg
    17521 cgaccgtctg gttatccgcg agctaaacaa aaacttaggc ttgctgctga taaccatcaa
    17581 ccaatatttc cttcacgccc gtattttgaa aaactggggc tttaaagaac tgggcgaaca
    17641 tttcttcaaa cagtccatcg ttgaaatgaa agctgcagac gatttgatcg agcgcattct
    17701 gttcctcgaa ggcctgccga acctgcaaga actgggcaaa ctcttgattg gtgaatctac
    17761 cgaagaaatc attgcctgcg atttgaccaa agaacaggaa aaacacgaag ccctgcttgc
    17821 tgccatcgct acagcagaag cgcaacagga ttacgtcagc cgtgatttgt tggaaaaaca
    17881 aaaagacacc aacgaagaac acatcgactg gcttgaaacc cagcaggaac tgatcggcaa
    17941 aattggtttg ccgaactacc tgcaaacagc ggcgcaagag gactaaaaca caaaccactg
    18001 ccaaatatag cagtcccctg catcatcaga cggcatatcc gtataaacgg gtatgccgtt
    18061 tttctttgcc ggtttgcgaa tcaaatctaa attgatttga atcaatactc gataacggtt
    18121 tttgtttaat aataccgata tgaaatctag attgcttgtt tgctgtttcc caatctgtct
    18181 tgattttacc tctttcctct tgatgtgtgt gtgtgtttgg gtgtggctgc cgccacccct
    18241 tttttttggc ttttatgtga agtaaaatcc gtaacagcaa atgcttaact ttaacattca
    18301 tccggaagca aatgatgggc aacaaattga ctctgcctgc cgaactgcct gccgaacagg
    18361 atttgcgggc ggtattggca tacaatatgc ggcttttccg cgtgaacaag ggttggtcgc
    18421 aagaagaatt ggcgcggcaa tgcggtttgg acaggactta tgtgtcggca gtcgaacgca
    18481 aacgctggaa catcgccctg tcgaatatcg aaaaaatggc ggcggctttg ggcgtggcgg
    18541 cgtatcagtt gctgctgccg ccgcaggaac ggttgaacct gatgaccaat tccgccgata
    18601 cccgacaaat gccgtctgaa agcggtattt gaccgccgaa ccatccgtct ccttttttcc
    18661 cgccaatcga aagaataaaa atgcctgcaa acctgtcttc agcactggaa accttcaaac
    18721 agcagcgcga tgccgccgaa gcgcattatt tgaaagccaa gcgcgtgtcg gtatttttca
    18781 gagaatacac ggcggcagtc gaaaccttac tggcggcatt gtgggtagaa cattttcaaa
    18841 acagcgcgtt atgcctgatg gcggtgggcg gcttcgggcg cggcgaactg tatccctgtt
    18901 cggatgtgga tttggcggtt gtctcccctg ccccgctttc agacggcatt caggaacaga
    18961 ttgcccggtt tgttcaaacc ctatgggact gcaaactgat gccgtctgta aaaagcggcg
    19021 gcattggcga actgtgcgaa agcgtgcgcg acgatattac gggggacacg gcgtttttag
    19081 aggctaggtt tttgtttggc aaccgccaaa cggcggataa actagcggaa aaaatgaacg
    19141 cgcagcgcaa tgtggcggcg tttgtcgagg caaaactggt ggagatggaa caccgccacg
    19201 ccaaatcgca aggctcaggg gcggtattgg aaccaaacat caaaagctgt ccgggcggtc
    19261 tgcgcgacat ccacaccctg ctttggatag cgaaggcgca aggcttggcg accgacctgc
    19321 ccgatctgct caaacagcgg attttgacgc gtgccgaagc cggtatgctt tcgcacggct
    19381 accgccgcct cgcccacatc cgcatccatc tgcatttaaa cgccaatcgc gccgaagacc
    19441 gcctgctgtt cgatttgcag ccgcaagtcg ccgaaagcat gggttatgaa ggcttgaacc
    19501 tccgccgcca aagcgaagaa ctgatgcgcg tgttttaccg cgcgattaaa accgtcaaac
    19561 aactgggcgg catcctcacg cctatgctgc aaagccgcgt ttcctccacc ccgttgcgcg
    19621 ttaccctgcg gattgacgac gactacatcc aagtcaacaa ccaaatcgcc gcgcggcaca
    19681 ccgatatttt tttcagacgg cccgaacaca ttttcaaaat cgtcgaaatc atgcagcagc
    19741 gcaacgatat taccgcgctc gaaccgcaaa ccctgcgcgc atggtggggc gcgacgcgca
    19801 aaatcaaccg cagcttctac caaaattctg aaaaccgcca ccgcttcgcc ggctttttcc
    19861 gcaacggcaa cggactgacc caaaccctgc gcttcctcaa cctctacggc gtattgggac
    19921 gctacctgcc cgcgtgggaa aaaatcgtcg gcctgctcca gcacgacctg ttccacattt
    19981 atcccgtgga cgaccacatc ctcgccgtcg tccgcaacgt ccgccgcctt gccttggata
    20041 tgcacagcca cgagctgccc tatgcctccg cgctgatgca gtcctttgaa aaacaagaca
    20101 tcctctatct cgccgccttc ttccacgaca tcgccaaagg acgcggcggc gaccacgcca
    20161 tacaaggcat cgcagacgcg cgccaatttg ccgctgacca cttcctgacc ggagaagaaa
    20221 gcgacctgct cgcctggctg gtcgaaaacc acctgctgat gtctgccgtc gcccaaaaag
    20281 aagacatcca agaccccgac gtactcgatg ctttctgcaa acgcgtccaa acccacgaac
    20341 gcctcagcgc gctctacctt ctgaccattt ccgacatacg cggcaccaat cccaagctgt
    20401 ggaacgcatg gcgcgccagc ctgctggaaa gcctcttcca tgccgccgga cgctacctta
    20461 caggcaacgg cggcaacccg cacaccctct tcggccgccg ccggcaggaa gccgccgact
    20521 tactcacccg cgccgccgtc cccgaaaaac agcagaaaaa actatggaac gcgctcggtt
    20581 ccgcctactt cgcccgccac cagtcccgcg aaatcctgtg gcacgccgcc aacctagtcc
    20641 acgactttga aacccccatc gtccgcagcc gcatcctgcc caaaagcgac agctttcaag
    20701 tcatggtttt catgcccaac ggcccgcgcc tgttcgcccg cctctgccgc atcttcagcc
    20761 gccacggctt cgatatcctc gccgcccgcg cctttattac cgaacacgac tacatcctcg
    20821 acaccttcat cgtgcaaatc ccctcgcagc acgctcccga agactacccc gacatccaaa
    20881 gcgcgctcga agccgaactc aacagcttta tccacggaca caccgttgcc gaaatctcca
    20941 gccatagccg ccgcatcagc cgccgcagcc gctacatgcc gatcgcgcca agcatcacca
    21001 tcacccccga agaagactat ccggactggt actccgtcga aattaccgcc gtcaaccgcc
    21061 ccttcctgct cgccgatatg gcggaagtct ttttcgccca caacgtcagc ctgcgctatg
    21121 ccaaaatctc cacactggat gaacgcgccg aagacagttt taccgttttt agccccgacc
    21181 tgaaaaaccc aaaaatccag tcctcattga agcaggcttt gctggaacag ttgacataag
    21241 caccctgccg gttttcagac ggtatcccgc cgccgcgccg tacgctgtct gaaggcgggg
    21301 gatattgcaa acaatataaa ctgtcaagcc gccggtaacg tgctataatg ccgtgcatct
    21361 tgcacaaact gaaagaccga gcattatgcg tatcgtagaa aaagcctata ctttcgacga
    21421 tgttttgttg gttcccgcac attcgaccgt gctgccgcga gacgttaaac ttcaaaccaa
    21481 gctcacccgc gaaatcatac tcaacctccc cctgctttcc gccgcgatgg acactgttac
    21541 cgaggcgcgc ctcgccattt cgatggcaca ggaaggcggc atcggcatca tccataaaaa
    21601 tatgccgccc gaaatgcagg cgcgcgccgt ttccaaagtg aaacgccacg aaagcggcgt
    21661 ggtcaaagac cccgtaaccg ttgcgccgac aacgctcatc cgcgaagtct tggaaatgcg
    21721 tgcgcagcgc aaacgcaaaa tgtccggcct gcccgtcgtt gaaaacggca aagtcgtcgg
    21781 catcgtaacc aaccgcgacc tgcgttttga aaaccgcgtc gatttgcccg tttccgccat
    21841 tatgaccccg cgcgaacgtc tggttaccgt ccccgaaggc acaagcatag acgaagcgcg
    21901 cgaactgatg cacacgcaca aagtcgagcg cgttttggtt ctgaacgaaa aagacgaact
    21961 caaaggtctg attaccgtca aagatatttt aaaaaccacc gagtttccca acgccaacaa
    22021 agactccgaa ggccgtctgc gcgtcggtgc ggcagtcggc accggcggcg ataccgaaga
    22081 gcgcgtcaaa gccttggttg aggccggcgt ggacgtgatt gtcgtcgata ccgcccacgg
    22141 gcacagccaa ggcgtgattg atcgcgttcg ctgggtcaaa gaaacctatc cgcacatcca
    22201 agtcatcggc ggcaacatcg ccactgccaa agccgcattg gatttggtcg ccgccggcgc
    22261 ggatgccgtc aaagtcggta tcggtccggg atcgatttgc accacccgta tcgtggcagg
    22321 cgtgggcgtg ccgcaactga ccgccattca caacgttgcc gaagccctca aaggcacggg
    22381 cgttccgctg attgccgacg gcggcatccg cttctccggc gacatcgcca aagccctcgc
    22441 cgcaggcgcg tacagcgtca tgctcggcgg tatgtttgca ggcacggaag aagcgccggg
    22501 cgaaatcgaa ctctaccaag gccgctcata caaatcctat cgcggtatgg gttccttggg
    22561 cgcgatgagc caaggttctg ccgaccgcta cttccaagac aaaaccgaca gcaccgacaa
    22621 atacgtcccc gaaggcatcg aaggccgcgt gccttacaaa ggcccgatcg tgaatatcat
    22681 ccaccaactg accggcggtc tgcgttccag tatgggttac ttgggttgcg ccaatattgc
    22741 cgaaatgcac gaaaaagccg aatttgtgga aatcacttcc gcaggtatga gcgaatcgca
    22801 cgttcacgac gttcaaatca ctaaagaagc accgaactac caccgctgat ttgaacagcc
    22861 tttcaggaca aaatgccgtc tgaagccctg ttttcaggtt tcagacggca ttttttgtcc
    22921 gttcaaggta agccgcacgg gctgattgcg cggacgggca aagcaattcg gacggacacg
    22981 ccgaaagaat gaaaatgccg tctgaacgcc gtttgcgccc cgtctgccga ataccgccgg
    23041 cctttaaaac ggcggtggaa ataaacgcaa tctttcaata cgggcgtttc gattggcctg
    23101 aaatgatgcg ccggccgcca tatcaaaaaa tcgggcggcg gcttcgggaa agtatgcccc
    23161 gccctcccca agccaccccg tcagcattat gatttgcctt tccgtttttt taccttaatc
    23221 ggaaccggtt tctttgcctt tttccccgat tctgcggcgg cagacgcgcc ccttcccctt
    23281 actttgccgc ctcgggctgt ttttttcccg gcggcggttt tcggcttccc tttccccgcc
    23341 gtccctgccg gtttggcaga cgcggatgat ttaactttcc gccctctgcc gctcccctcg
    23401 gcaatcagga caaaatcgat ttttccatca tccaaatcgg cacgggccac tttaatggca
    23461 accctgtcgc ccatattgaa acggatgcca ctgcgttcac cttcgattgc catgatttcg
    23521 gggcggaagt tgaaatagtc ttcgcccaaa tcgctgatat gcaccagacc gtcgatatgg
    23581 atatcgtcca aagtgacaaa tattccaaaa tttgccaccc cggaaatttt gccttcaaat
    23641 atttcgccga ctttgtcacg catatagtag gttttcagcc agttttccac gtcgcggctg
    23701 gcgtcgtcgg cacggcgctc acagaacgag gtatgcacgc ccaaagcctg ccagcttttt
    23761 tttggcgtgt aggtttgctg attcaacacg gctttgatgg cgcggtgtac ggtcaggtcg
    23821 ggatagcggc ggatgggcga ggtgaagtgg gcgtatgctt cgtaggcaag accaaagtgt
    23881 ccgtcgcaat gcggttcgta aaccgcctgt tgcatggagc gcaacatcat gacttgcagc
    23941 aattcggcat ccggcctgcc tttgaactgt ccggcaagcg cggcatagtc tttcggcgac
    24001 gggttgtcgc cgccgccaag ttgaagcccc aacagaccga actgctcgcg caaggcggcg
    24061 agtttttcgg gcgtgggccc caaatggttg cggaacaatg cggtatgctt gtttttcaac
    24121 agaaaatccg ctgcgcaaac gtttgccgcc aacatacatt cttcaatcag cttgtgggca
    24181 tcgttgcgga caacggggac gattttttca attttaccgt tgtcgtcgaa aagcatttgg
    24241 gtttcgatgc tgtcaaactc caccgccccg cgttcgaaac gctttttctg aaggattttg
    24301 aagagtttgt aaagcgtgtc gatttgggct ttgaacggat gcccgatgcc gcctgaaagc
    24361 catttccaaa cttggttgta ggtcaggcgg gcatgagagc gcatcacggc ggggtagaag
    24421 cggtattctt taatattgcc cgcgtaagtg ataaccatat cgcacaccat acacaaacgc
    24481 tcgacattag gattgagcga gcagatgccg ttggacaggt tttccggcaa catgggaatc
    24541 acgcggcgcg ggaagtaaac actggtgctg cgttcctgag cgtccgtgtc gatagcgtca
    24601 tcggggcgga cataatggct gacatcggca atcgccacga ccagacggta attgcgtccg
    24661 attttttcgg caaacaccgc atcgtcaaaa tctcgagccg tttcgccgtc aatcgttacc
    24721 aaaggcaggt cgcgcaaatc gacgcggcct ttcaaatcgc ttttgcgtac atggtcggga
    24781 atttttttca cggctttggc acacgcttca ctgaattggt gcggcaaatg atgcttgcgc
    24841 acggcaattt caatctccat gccgctgtcg gcataatcgc ccaaaacttc gatgattttt
    24901 gccactgccg gccggttttg ctcaggataa acctcaattt cgccgacgat gacctgaccg
    24961 gattcaggtt tgaaacgcgc cacgccgtcc ggttccaata cgatgctttg gttcagacgc
    25021 ttgtcttccg gctccaaaat cgccacgccc ctatccatat agaaacggcc gaccactttg
    25081 ctttgcgcgc gttcgacaat atccagaact gtcccttcgc ggcggcccct acggtccatg
    25141 ccggcaggac gaacaatgac aatatcgccg tgcataatgc cgcgcatctg gcgttcgtac
    25201 aaaacaaaat caccgtcttt ggcgggcgtg agcggcacgg cgaaaccgaa gccgtctttg
    25261 tgcgcctcga cacggcattt gaccaaatcc aatttgtccg ccgcgcaaac cgcgccccgg
    25321 cggttgatta aaacctgacc gtcccgcgcc atcgccttca gacggcgttc gaaaaagaca
    25381 tactcgtctt ccgtaatcga cagctcgcgc gcaagcgatt cgatttttga aggcacacct
    25441 ttgcgctcca acaattcgat tatccattcc cgactgggca aaggatgttc ataacgctgt
    25501 ttttcacgac ttaaaaacgg gtctttttcc cgtaaattta aagatttaat atttttattc
    25561 atttggactg ttgacattct ctttatgaac tatataatag cgacttcttt gcggcaggac
    25621 actgtaccgc aaaacagcaa ataaagcaaa gcccgggtgg cggaattggt agacgcgcta
    25681 gcttcaggtg ctagtatcct cacgggtgtg gaagttcgag tcttctcccg ggcaccaaat
    25741 caaatgcttt gctttatttc aatatttaga ttgcccgggt ggcggaattg gtagacgcgc
    25801 cagcttcagg tgctggtatc ctcacgggtg tggaagttcg agtcttctcc cgggcaccaa
    25861 ataataaatt atcccgattg ggataatttc cgccattaga gaggtggatg agtggtttaa
    25921 gtcgcacgcc tggaaagcgt gtatacgtga atagcgtatc gagggttcga atcccttcct
    25981 ctctgccaaa tacaaatccc aaacttttac agtttgggat tttttgttat tcaaacaata
    26041 atttcattgg gaaaacctgt tattgtctat aatcgtcatc aaccgtttac aactatccgt
    26101 taccgttttt ttatggtacg ttttatcctc ttcctcagcc tgtaaggact caaaaggcgt
    26161 atcccttcaa acggcattat tcgacatgct gccgggaagc cgaacccgat accgaaacgc
    26221 gacggggcga tatgccgctg gaaaaatggc ggcagtttct tgattgggta ggaaaaacgc
    26281 cgtctgaaac agcttcaaga agccgcaaag cccgtccgaa taaaaaatgc cgtctgaaat
    26341 ttttcagacg gcatcgcgta tcatttaaac attaatccag taaacatcaa tccagctttt
    26401 taaagtggcg gcggcgttcc aattcgctca agtaacgctt gcgcagacgg atggattgcg
    26461 gcgtgatttc aacgagttcg tcatcgtcga taaactcaac cgcaccttcc agcgtcagct
    26521 taatcggcgt ggtcaggcga acggcttcgt cggtaccgct ggcacggatg ttggtaagtt
    26581 ttttgccttt gagcgggttg accaccaaat cgttgtcgcg actgtggatg ccgataatca
    26641 taccttcgta gattttgtcg ttgggcgata cgaacatacg gccgcggtct tccagattcc
    26701 acaaggcgta agcgaccgcc tcgccctgct cttgggacac cagcacgccg ttgtggcggc
    26761 cgggcatatc gggtttgacg ggcgcgtaat cgtcgaacac gtggctcatc agtccgacac
    26821 cgcgcgtcaa ggtcatgaat tcgccttgga aaccgatcaa gccgcgcgct ggaatatggt
    26881 attcgaggcg ggtgcgtccg ttgccgtcgc tttccatatt agtcagttcg ccacggcggc
    26941 ggccgagttc ttccattacc gcgccttggt tgtcgtcggg tacgtccacg gtcaggtttt
    27001 cataaggttc gcatttttga ccgtcgatgt cgcggtacac gacgcgcggt ttgccgacgg
    27061 cgagttcgta gccttcgcgg cgcatatttt ccaacaaaat ggtcaggtgc agctcgccgc
    27121 gtccggatac gcggaacacg tcggcatcgg cggtgtcttc cacgcgcagg gcgacgttgg
    27181 tcagcaattc tttttgcagg cggtcgcgga tttggcggct ggttacgaat ttgccttccg
    27241 tacccgccag cgggctggtg ttgaccataa agtccatcgt cagcgtcggt tcgtccacgc
    27301 tcaacatcgg caggcctttg gggttgtctt tgtcggtgat ggttacgccg atgccgatgt
    27361 cttcgatacc ggaaataatc acgatgtcgc cggcttcggc ttcttcaagc ggtacgcgtt
    27421 ccaagccttt gaaacccaaa agctggttga tgcggccttg ggcgatttgc tgctcgtggt
    27481 tcatgacggc aacggtttgg ccgggtttga tgcgtccgtt caagatacga ccgatgccga
    27541 ggcggccggt gtagttgtcg tagtcgagtt gggaaatttg cagttgcagc ggctcgtccg
    27601 cgctgccgct cggtgcgggc gtgtgtttta agatggtgtc gaacagcggg cgcatatcgc
    27661 tgctctcgtc ggtttcttcc agcttggcaa agccgctcaa acctgaagcg taaacaatcg
    27721 ggaaatccaa ctgctcgtcg gtcgcgccca agttgtcgaa cagctcgaaa gtttggtcga
    27781 taacccagct cggacgtgca gacggcttgt cgattttatt gatgacgaca atcggtttca
    27841 gccccaaagc caaggctttt ttggtcacga aacgggtttg cggcatcggg ccttcctgcg
    27901 cgtccaccaa caagacgacg cagtccacca tccccaaaac gcgctctact tcgccgccga
    27961 agtcggcgtg tcccggcgta tcgacgatat tgatgtggta gccttcgtaa tcgatggcgg
    28021 tgtttttggc gaggatggtg atgccgcgtt ctttttcgag gtcgttgctg tccatcacgc
    28081 gctcgtcaac ctgctggttg gcgcggaatg tgccggattg gcgcagcagt tggtcgacca
    28141 atgtggtttt gccgtggtcg acgtgggcga tgatggcgat gttgcggatt tgtttcataa
    28201 ttaatgtttt tcaaaaactg taagagataa ctgcgcatta taccacgctt taccggacag
    28261 tatttgggaa atgaagatgc cgtctgaagc ccttgccttt cagacggcat cttcattacg
    28321 tactttcagt tatccggtta cgcagccacc ttgccgccgg ggcgatttcc cctgccaaca
    28381 gccctgccgc aatgcctgcc gattctttta tgatatccgc cgccgcgccg tgcagccacg
    28441 cgcccgcgca ggcggcttca aaaaccggca cgccctgtgc gagcagactg ccgatgatgc
    28501 cgcccaatac gtcgccactg cccgccgttg ccaatcccgc gttgccactt tcgttgacat
    28561 agatttccgt atcggacgcg gcaaccaatg ttttgtgccc ctttaaaacc acggttgcgc
    28621 cgaaaattgc ccctatcttc ctcactgccg ccgtccgatc cgcctgaacc tgtgcaaccg
    28681 tcgttccaag caggcgcgcg gcttcggcgg ggtgtggcgt taaaatcagg tttttacacc
    28741 cgcgtgccag atttcgggtt tcggcatcgg ttgataatat gttcagcgcg tccgcatcca
    28801 aaaggacgag cttgtccgtg tgttccgtca aaattccggc aagcgttccg accgccgccc
    28861 tacctgtacc caatccacaa ccgacaaccc aggcgtttat atcttgacgt ttggccaaac
    28921 tgtccgccgt atccagcata atctcgggaa aaccggcaat aacggcaaaa ggtagcgtat
    28981 cctgattgaa acccgcccac actttgccgc agccgagata cattgccgcc gatgccgcca
    29041 atacgggcgc gccgctcatc cctgccgatc cgccgactac ggcgagcgtg ccgaaagtcc
    29101 ctttgtgcga atcttccgca cgggctttga aaacatgggg aaaacgcaat gccgtctgaa
    29161 gcatccggcg gcggctctcg cctgaaagat gaaaaacggg aaacattgcc cctccaatcg
    29221 gttaaaataa ggctcgaaaa caaaccgatt ctaccgccgg aaaccgatta tgaaaaacaa
    29281 aaccaaagtc tgggacctcc ccacccgcct tttccactgg ctgcttgccg cgtccctgcc
    29341 ctttatgtgg tatagcgcga aagccggcgg cgatatgctg caatggcaca cgcgcgtcgg
    29401 gctgttcgtc cttttcctgc tcgtatttcg cctctgctgg ggcatttggg gcagcgatac
    29461 cgcccgtttt tcccgtttcg tccaaggctg ggcaggcata cgcggctatc tgaaaaacgg
    29521 tattcccgaa cacatccagc ccggacacaa ccccttgggc gcactgatgg tcgtcgcgct
    29581 tctggccgcc gtgtcgttcc aagtcggcac cgggcttttt gccgccgatg aaaacacctt
    29641 cagcaccaac ggctacctca accatttggt ttccgaacat acgggcagcc ttatgcggaa
    29701 aatccacctc aactttttca agctgctcgc cgttttttcc gcagtccaca tcgctgctgt
    29761 cgccgcatac cgcgtgttca aaaagaaaaa cctcgtcctc ccgatgataa ccggcttcaa
    29821 atacatcgaa ggcaaaacct caatccgctt tgccggcaaa gccgcgcttg ccgccgcatt
    29881 atcggttgcc gcgcttgccg cagccgccat cctgctcctg tcctgaaacc cgacatcaat
    29941 gccgtctgaa acccttttcg cccttcggac ggcatcccct ctccgcgcaa acggtctgaa
    30001 tgcccgaaac ggcttcaggc cgtttttccg tcccaaaccg ttttatagtg gattaacaaa
    30061 aatcaggaca aggagacgaa gccgcagaca gtacggatag tacagaaccg atttactt
//
LOCUS       DAXHPV010000004        29112 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.004, whole genome shotgun sequence.
ACCESSION   DAXHPV010000004 DAXHPV010000000
VERSION     DAXHPV010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 29112)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29112)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29112
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.004"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(92..880)
                     /locus_tag="ACFM6C_000109"
     CDS             complement(92..880)
                     /locus_tag="ACFM6C_000109"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003701699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6157632.1"
                     /translation="MNPQDKCWQVHRHLAEYADQRLTLVRNAPKHILLAGADADISRS
                     LLAKRYPQAVFEEYDSRADFLAAAAAARKGGFWQRFAGKGVVQHCQSPTAPLPEACAD
                     MLWSNLGLLAAESIVPVLQNWARALKTDGLLFFTCFGRDTLAELKCRLKENGIESRSV
                     MFPDMHDLGDMLAENGFYAPVTDTAKLVLDYKKAETFWADMDTLGVWRAMAWNDENAA
                     RSCVGTIFEREGGLGITLETVYGHAVKKLMLPQGENVVQFFPKR"
     gene            complement(882..1625)
                     /gene="bioH"
                     /locus_tag="ACFM6C_000110"
     CDS             complement(882..1625)
                     /gene="bioH"
                     /locus_tag="ACFM6C_000110"
                     /EC_number="3.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052689 - carboxylic ester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl ester esterase BioH"
                     /protein_id="HFC6157633.1"
                     /translation="MPDAAKKVYLIHGWGANRHVFDDLMPRLPATWPVSAVDLPGHGD
                     APFAQPFDIEAAADAVAAQIDTPADILGWSLGGLVALYLAARHPDKVRSLCLTASFAR
                     LTADEDYPEGLAAPALGKMVGAFRTDYAKHIKQFLQLQLLHTHDADGIIGRILPDLAR
                     CGTPSALQEALDAAERADARHLLDKIDVPVLLVFGSKDAITPPRMGEYLHRHLKGSRL
                     VVMEKAAHAPFLSHAEAFAALYRDFVEGV"
     gene            1624..2349
                     /locus_tag="ACFM6C_000111"
     CDS             1624..2349
                     /locus_tag="ACFM6C_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HFC6157634.1"
                     /translation="MNFLSCWRRIADAPTIRRCVLCHGSSGVSDGICAGCAADLAAYR
                     TDAANSCPLCFRHIQGGAVCGGCQKKPPAFDRMWASLHYEPPVSNMIHALKHLADLSM
                     VQPLADLMMQNPPDRLADECFDFVLPVPLSRERLLQRGFNQSESIVGLLAQRYGWRIL
                     PRHTVFRHHRPPQSTLKGSERRRNIKNAFEIRTPIPENCNILLIDDVFTTGATLDELA
                     KTLKQSDANRICCWTLARTPMKK"
     gene            2414..2878
                     /gene="trmL"
                     /locus_tag="ACFM6C_000112"
     CDS             2414..2878
                     /gene="trmL"
                     /locus_tag="ACFM6C_000112"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008175 - tRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HFC6157635.1"
                     /translation="MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKM
                     KRAGLDYHEFASLTVYENFDDCLKALAGRRIFALTTKGTAHPDETAFQKGDVLLFGPE
                     TRGLPADILDSLPAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQHGYAGGV"
     gene            2889..3011
                     /locus_tag="ACFM6C_000113"
     CDS             2889..3011
                     /locus_tag="ACFM6C_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter"
                     /protein_id="HFC6157636.1"
                     /translation="MPSENLSGHIPNRRPHCTAVRNVSGGHDAHSSSTQERNTF"
     gene            3008..3727
                     /locus_tag="ACFM6C_000114"
     CDS             3008..3727
                     /locus_tag="ACFM6C_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HFC6157637.1"
                     /translation="MTLTRKTLFLLTAAFGTHSLQTTSADAVVKAEKLHASANRSYKV
                     AGKRYTPKNQVAEFTQTGNASWYGGRFHGRKTSGGERYDMNAFTAAHKTLPIPSYVRV
                     TNTKNGKSVIVRVNDRGPFHGNRIIDVSKAAAQKLGFVSQGTAHVKIEQIVPGQSAPV
                     AENKDIFIDLKSFGTEHEAQAYLNQAAQNFAVSSSGTNLSVEKRRYEYVVKMGPFASQ
                     ERAAEAEAQARGMVRAVLTAG"
     gene            3781..4107
                     /locus_tag="ACFM6C_000115"
     CDS             3781..4107
                     /locus_tag="ACFM6C_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HFC6157638.1"
                     /translation="MNFKRLLLTAAATALMGISAPALAHHDGHGDDDHGHAAHQHNKQ
                     DKIISRAQAEKAALARVGGKITDIDLEHDNGRPHYDVEIVKNGQEYKVVVDARTGRVI
                     SSRRDD"
     gene            4189..4773
                     /gene="ruvA"
                     /locus_tag="ACFM6C_000116"
     CDS             4189..4773
                     /gene="ruvA"
                     /locus_tag="ACFM6C_000116"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HFC6157639.1"
                     /translation="MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGES
                     VQLFTQLIIREDAHLLFGFATAEERKTFRQLIKVGGIGAKTALGILSAMTADELARAV
                     AEEDVKRLSSAPGIGKKTAERMVLELRGKLVAHTVTDGLFAAAPAADETEDIVSTLLA
                     LGYSEREAKAAVKGVPEGTDVGEGVRLALKNLLK"
     gene            4773..4910
                     /locus_tag="ACFM6C_000117"
     CDS             4773..4910
                     /locus_tag="ACFM6C_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157640.1"
                     /translation="MPPEGGAAFALTKPCVSASRCLPDGFSRKMALLSFLSDGIVFDA
                     V"
     gene            4936..6792
                     /locus_tag="ACFM6C_000118"
     CDS             4936..6792
                     /locus_tag="ACFM6C_000118"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6157641.1"
                     /translation="MLNKIFSWFESRIDPYPEAAPKTPEKGLWRFVWSSMAGVRKWIA
                     ALAALTAGIGIMEALVFQFMGKIVEWLGKYAPAELFAEKGWELAAMAAMMVFSVVWAY
                     AASNVRLQTLQGVFPMRLRWNFHRLMLNQSLGFYQDEFAGRVSAKVMQTALALRDAVM
                     TVADMVVYVSVYFITSGVILASLDSWLLLPFIGWIVGFASVMRLLIPKLGQTAAWQAD
                     ARSLMTGRITDAYSNIATVKLFSHGAREAAYAKQSMEEFMVTVRAQMRLATLLHSCSF
                     IVNTSLTLSTAALGIWLWHNGQVGVGAVATATAMALRVNGLSQYIMWESARLFENIGT
                     VNDGMATLSKPHTILDKPRALPLNVPQGAIKFEHIDFCYEAGKPLLNGFNLTIRPGEK
                     VGLIGRSGAGKSTIVNLLLRFYEPQSGTVSIDGQDISGITQESLRAQIGLVTQDTSLL
                     HRSVRDNIIYGRPDATDAEMVSAAERAEAAGFIPELSDAKGRRGYDAHVGERGVKLSG
                     GQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQESLDKMMDGKTVIAIAHRLST
                     IAAMDRLVVLDKGRIIEEGTHAELLEKRGLYAKLWAHQSGGFLNEHVEWQHD"
     gene            6797..7720
                     /gene="rsgA"
                     /locus_tag="ACFM6C_000119"
     CDS             6797..7720
                     /gene="rsgA"
                     /locus_tag="ACFM6C_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HFC6157642.1"
                     /translation="MPSEHPFSDGISTPNPKETMNDTAQITASYGRRYIVRTPDGTTY
                     EASTRKKRVDFACGDRVRISPVNAEQVVIEDFLPRQSLLYRQDAWKTKLIAANVTQLL
                     IVTAAVPSPSVRLLQRALLAAEAAGIRAVIVLNKADLPETALWREKLKFYETLGYPVI
                     ETRALENAGSLRPALQGHSNILLGQSGMGKSTLTNALLGSQTARTGDISAALDSGKHT
                     TTHARLYDLNGETQLIDSPGLQEFGLHHLQAADLPRYFPDFRHLVGQCRFHNCTHRAE
                     PGCAFKAAAETRAASPERLAFLQGITDELPG"
     gene            7747..7836
                     /locus_tag="ACFM6C_000120"
                     /pseudo
     CDS             7747..7836
                     /locus_tag="ACFM6C_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676973.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
     gene            7945..8208
                     /locus_tag="ACFM6C_000121"
     CDS             7945..8208
                     /locus_tag="ACFM6C_000121"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HFC6157643.1"
                     /translation="MSKWRGFNRKGNTMKKNAPKSFEEALSRLESLTQAMQGEMPLED
                     ALAAYQEGNELVRYCQTKLAQVEQKLQVLDVDGLKELNLESDE"
     gene            8192..9088
                     /locus_tag="ACFM6C_000122"
     CDS             8192..9088
                     /locus_tag="ACFM6C_000122"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004659 - prenyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HFC6157644.1"
                     /translation="MNPTNDLKAWQQRAQAQTELLLERFLPSENEIPHTLHEAMRYAA
                     LDGGKRLRPMLVLAASELGGAVADAVGQAMAAIEMIHVYSLVHDDMPAMDNDSLRRGK
                     PTCHVQYDEATALLVGDALQTQAFDVLSRPTELPAARQLAMLSVLAKAGGSAGMAGGQ
                     AIDLANVGKQMVQADLEQMHSLKTGALIRAAVLLGAMSCPNLSEDSLAVLDDYAAKLG
                     LAFQVIDDVLDCEADTATLGKTAGKDADNDKPTYVKLMGLDGARAYAYQLTDEAVSLL
                     EPFGDKALRLRQLAEFAVARKY"
     gene            complement(9197..9496)
                     /locus_tag="ACFM6C_000123"
     CDS             complement(9197..9496)
                     /locus_tag="ACFM6C_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2818 family protein"
                     /protein_id="HFC6157645.1"
                     /translation="MTASMYILLLLALIFANAPFLTTRLFGIVPLKRKHFGHHLIELA
                     AGFALTAVLAYILESRAGAVHDQGWEFYATVVCLYLIFAFPCFVWRYFWHTRNRE"
     gene            complement(9608..11053)
                     /gene="nuoN"
                     /locus_tag="ACFM6C_000124"
     CDS             complement(9608..11053)
                     /gene="nuoN"
                     /locus_tag="ACFM6C_000124"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoN"
                     /protein_id="HFC6157646.1"
                     /translation="MNWSDLNLMPAMPEVALLSLLVLLLLADLWVSDDKRRWTHYGAL
                     ATVAVTAVVQLAVWEQGSTSSFNGMYIADGMSRLAKMVLYALTFALFVYAKPYNQVRG
                     IFKGEFYTLSLFALLGMSVMVSAGHFLTAYIGLELLSLALYALIALRRDSGFAAEAAL
                     KYFVLGALASGLLLYGISMVYGATGSLEFAGVLASSFNEEANEWLLKLGLVFIVVAVA
                     FKLGAVPFHMWVPDVYHGAPTSVTALVGTAPKIAAVVFAFRILVTGLGTVHHDWSLMF
                     ALLAAASLLVGNLAAIMQTNIKRMLAYSTVSHMGFILLAFMAGAVGFAAGLYYAITYA
                     LMAAAGFGVLMVLSDGDDECENISDLAGLNQHRVWLAFLMLLVMFSMAGIPPLMGFYA
                     KFGVIMALLKQGYVWLSVFAVVMSLIGAFYYLRVVKVMYFDESGRARPTVGGNNAAKF
                     LLSVNALLLVLWGIMPQTVIDWCAKALENTL"
     gene            complement(11063..12559)
                     /locus_tag="ACFM6C_000125"
     CDS             complement(11063..12559)
                     /locus_tag="ACFM6C_000125"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HFC6157647.1"
                     /translation="MFSNYLLSLAIWIPIAAGVLVLSTGKDSRAPLARVLAFMGALAG
                     FLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVL
                     AGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPR
                     RVYASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFAAFFL
                     SFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFA
                     PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKG
                     AVIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGL
                     PATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIYGAIHNPHVAEM
                     KDINCREFAILAILAVVVLGMGLYPQAFIEVVHQAANDLIAHVAQSKI"
     gene            complement(12669..13832)
                     /locus_tag="ACFM6C_000126"
     CDS             complement(12669..13832)
                     /locus_tag="ACFM6C_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="HFC6157648.1"
                     /translation="MTQLFLHSDTPNEKELISIYEKAVSEAVELYIFSAYLTHWDVKN
                     KLNSKLQEFKFIFGQDFGLSKKEAIRKVLKWLPSHLKFTLMVAQGIQGFHPKAVFWKN
                     DKNEYYALIGSSNLTHAAFNSNYEANILTKISEQDFIKVKSWADEIAMKSIPVSEDWL
                     EEYQEAEINYKKSTVSQSLMDKLFMEMPNYNQELIAARRKQMRNHQTVCNQLKSLIKQ
                     CAAGKIDNDEFYVEFNKLWSWKSENKGEGVGNRFQDQTWKRTGKSSDFRKLCIAIQSV
                     FDAPLAERDNVVAKQIDWLKECGVSTRGSVFSEMLCQEYPDRYPVLNAPIKKFLEKNK
                     FKSAKGASEGSRYIDLSMKLRALLAMQSEIKNLAELDVLVQAEYRDSTDIDWE"
     gene            complement(14016..16040)
                     /gene="nuoL"
                     /locus_tag="ACFM6C_000127"
     CDS             complement(14016..16040)
                     /gene="nuoL"
                     /locus_tag="ACFM6C_000127"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HFC6157649.1"
                     /translation="MNDMTLYLIIALVPLAGSLIAGLFGNKIGRAGAHTVTILGVAVS
                     AVLSAYVLWGFIDGSRAKFDENVYTWLTMGGLDFSVGFLVDTMTAMMMVVVTGVSLMV
                     HIYTIGYMHDEKVGYQRFFSYISLFTFSMLMLIMSNNFIQLFFGWEAVGLVSYLLIGF
                     YFKRPSATFANLKAFLINRVGDFGFLLGIGLVLAYFGGSLRYQDVFAYLPNVQNATIQ
                     LFPGVEWSLITVTCLLLFVGAMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGL
                     FMVSRMSPIYEMSSTALSVIMVIGAITALFMGFLGVIQNDIKRVVAYSTLSQLGYMTV
                     ALGASAYSVAMFHVMTHAFFKALLFLAAGSAIIGMHHDQDMRHMGNLKKYMPITWLTM
                     LIGNLSLIGTPFFSGFYSKDSIIEAAKYSTLPGSGFAYFAVLASVFVTAFYAFRQYFM
                     VFHGEEKWRSLPEHHSDGHGEEHHGLGKNDNPHESPLFVTLPLILLAIPSVIIGYVAI
                     EPMLYGDFFKDVIFVNADAHPTMHIMKEEFHGALAMVSHSLHSPVLYLAIAGVLSAWL
                     LYVKLPHLPAKIAQTFRPVYVLFENKYYLDALYFNVFAKGTRALGTFFWKVGDTAIID
                     NGIVNGSAKLVGAIAAQVRKAQTGFIYTYAAAMVFGVLVLLGMTFWGLFR"
     gene            complement(16089..16430)
                     /locus_tag="ACFM6C_000128"
     CDS             complement(16089..16430)
                     /locus_tag="ACFM6C_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157650.1"
                     /translation="MMDKNQLEQEFHKAMLNIYQEALNLPQPYKATRFLQIVNEFGGK
                     EAADKLLSTGEKKTQTGFTELILSGGGVHALKYSMEYLVLQKPWCDLFTEEQLAVARK
                     RLERVGFVFPK"
     gene            complement(16554..17129)
                     /gene="fic"
                     /locus_tag="ACFM6C_000129"
     CDS             complement(16554..17129)
                     /gene="fic"
                     /locus_tag="ACFM6C_000129"
                     /EC_number="2.7.7.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009175035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0070733 - AMPylase activity [Evidence
                     IEA];
                     GO_process: GO:0018117 - protein adenylylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein adenylyltransferase Fic"
                     /protein_id="HFC6157651.1"
                     /translation="MPSENPIGKTMKSIDEQSLHNARRLFESGDIDRIEVGTTAGLQQ
                     IHRYLFGGLYDFAGQIREDNISKGGFRFANAMYLKEALVKIEQMPERTFEEIIAKYVE
                     MNIAHPFLEGNGRSTRIWLDLVLKKNLKKVVNWQNVSKTLYLQAMERSPVNDLELRFL
                     LKDNLTDDVDNREIIFKGIEQSYYYEGYEKG"
     gene            complement(17163..17468)
                     /gene="nuoK"
                     /locus_tag="ACFM6C_000130"
     CDS             complement(17163..17468)
                     /gene="nuoK"
                     /locus_tag="ACFM6C_000130"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HFC6157652.1"
                     /translation="MITLTHYLVLGALLFGISAMGIFMNRKNVLVLLMSIELMLLAVN
                     FNFIAFSQHLGDTAGQIFVFFVLTVAAAESAIGLAIMVLVYRNRQTINVADLDGLKG"
     gene            complement(17465..18136)
                     /locus_tag="ACFM6C_000131"
     CDS             complement(17465..18136)
                     /locus_tag="ACFM6C_000131"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HFC6157653.1"
                     /translation="MTFQLILFYIFAVIILYGALKTVIAKNPVHAALHLVLTFCVSAM
                     LWMLMQAEFLGVTLVVVYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLL
                     AVALILILVNPKTDLAAFGLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMV
                     AAIALVHRKTVNPKRMDPADQVKVRADQGRMRLVKMEAVKPQVESAEESEVSDGLKPE
                     GEGKA"
     gene            complement(18172..18879)
                     /locus_tag="ACFM6C_000132"
     CDS             complement(18172..18879)
                     /locus_tag="ACFM6C_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157654.1"
                     /translation="MEGLINALKYLAKHEPIDNFEEIRIRNSPIELPSGLSNFEQNIF
                     LKENLSPKLQNDDSLKTHYWIIREWGGIKSFKQSAENSQLIRQFLSELNSGKLSIGLL
                     KISSLSKLASFIDCERFAIYDSRAIFSLNWLLFKFTNADLFFQPQGRNRELEIRNMNV
                     LFHFSDIKPNYRKPDVSFHQYCGLLQDLAKQVYGKQAKPYHIEMLLFKIATTWICADM
                     DQLIKFDCLRNQDFQTA"
     gene            complement(18910..19389)
                     /gene="nuoI"
                     /locus_tag="ACFM6C_000133"
     CDS             complement(18910..19389)
                     /gene="nuoI"
                     /locus_tag="ACFM6C_000133"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HFC6157655.1"
                     /translation="MANLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRF
                     RGLHAQRRYPNGEERCIACKLCEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFC
                     GFCEEACPTDAIVETHIFEYHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR"
     gene            complement(19470..20546)
                     /gene="nuoH"
                     /locus_tag="ACFM6C_000134"
     CDS             complement(19470..20546)
                     /gene="nuoH"
                     /locus_tag="ACFM6C_000134"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HFC6157656.1"
                     /translation="MQEWFQNLFAATLGLGDLGITVGLVVSVIVKIVIILIPLILTVA
                     YLTYFERKVIGFMQLRVGPNVTGPWGLIQPFADVFKLLFKEVTRPKLSNKALFYIGPI
                     MSLAPSFAAWAVIPFNEEWVLTNINIGLLYILMITSLSVYGVIIAGWASNSKYSFLGA
                     MRASAQSISYEIAMSAALVCVVMVSGSMNFSDIVAAQAKGIAGGSVFSWNWLPLFPIF
                     IVYLISAVAETNRAPFDVAEGESEIVAGHHVEYSGFAFALFFLAEYIFMILIAALTSL
                     MFLGGWLSPFPQSWGFIGTPSAFWMFVKMAAVLYWYLWIRATFPRYRYDQIMRLGWKV
                     LIPIGFAYIVILGVWMISPLNLWK"
     gene            complement(20549..22810)
                     /gene="nuoG"
                     /locus_tag="ACFM6C_000135"
     CDS             complement(20549..22810)
                     /gene="nuoG"
                     /locus_tag="ACFM6C_000135"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003776117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006120 - mitochondrial electron transport,
                     NADH to ubiquinone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoG"
                     /protein_id="HFC6157657.1"
                     /translation="MLQIEIDGKQVSVEQGATVIEAAHKLGTYIPHFCYHKKLSIAAN
                     CRMCLVDVEKAPKPLPACATPVTDGMIVRTHSAKAREAQEGVMEFLLINHPLDCPTCD
                     QGGECQLQDLAVGYGKTTSRYTEEKRSVVGKDMGPLVSAEEMSRCIHCTRCVRFTEEI
                     AGLQEIAMANRGEHSEIMSFIGKAVETELSGNVIDLCPVGALTSKPFRFNARTWELNR
                     RKSVSAHDALGSNLIVQTKDHTVRRVLPLENEAINECWLSDRDRFAYEGLYHESRLKN
                     PKIKQGGEWMDVDWKTALEYVRSAIECIAKDGNQNQVGIWANPMNTVEELYLAKKLAD
                     GLGVKNFATRLRQQDKRLSDGIKGAQWLGQSIESLADNDAVLVVGANLRKEQPLLTAR
                     LRRAAKDRMALSVLAGSKEELLMPLLSQEAAHPDEWAGRLKNLSANAEHAVTASLKNA
                     EKAAVILGAEVQNHPDYAAIYAAAQELADATGAVLGILPQAANSVGADVLGVNSGESV
                     TEMANAPKQAVLLLNVEPEIDTVDGSKAVAALKQAKSVMAFTPFVSETLLDVCDVLLP
                     IAPFTETSGSFINMEGRLQSFHGVVQGFGDSRPLWKVLRVLGNLFDLKGFEYHDTAAI
                     LKDALDAESLPSKLDNRVSSTQKDFQTASSRLVRVGGVGIYHTDAIVRRSVPLQETSH
                     AAVPAARVNPNTLARLGLQDGQTAVAKQNGAGVSVAVKADAGLPENVVHLPLHTENAA
                     LGALMDTIELAGA"
     gene            complement(23092..23403)
                     /locus_tag="ACFM6C_000136"
     CDS             complement(23092..23403)
                     /locus_tag="ACFM6C_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HFC6157658.1"
                     /translation="MRNHPLTRQPAVYILANGKNGTLYIGVTMNLPERVWQHKNHVNI
                     DGFTARYDVHDLVWYQFFENMPEAVAKEKTMKKWRREWKIKLIEEQNPEWLDLSGVLF
                     V"
     gene            complement(23647..24084)
                     /locus_tag="ACFM6C_000137"
     CDS             complement(23647..24084)
                     /locus_tag="ACFM6C_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157659.1"
                     /translation="MVEAKIFILYGAANKGKSTTLNTLFNQICRKFSKFLVFFERHGN
                     GLDFVAVFDHEGQRIGFYSSGDNEYEVRRNLYKLYSHNCDFIFGTSRTRGGSCDAVGC
                     YAELLHGDVNIINWCEKFEPTDEDNERAVKELFKSFKNIINEL"
     gene            complement(24084..25385)
                     /gene="nuoF"
                     /locus_tag="ACFM6C_000138"
     CDS             complement(24084..25385)
                     /gene="nuoF"
                     /locus_tag="ACFM6C_000138"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HFC6157660.1"
                     /translation="MAIYQSGVIFDQVDTANPDCWTLDEYVKRGGYTALRKILSENIS
                     QTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGEKYVVCNTDEGEPGTFKDRDII
                     MFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRFEAALEQARAAGFLGKNILGS
                     DFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTET
                     FSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNYEVPLGTPFAEVLKMAGG
                     MRGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSMLGSGAIIVMDEDVCMVK
                     ALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMEDLDLLDSVGNQMAGRT
                     ICALADAAVFPVRSFTKHFRDEFVHYIEHGGPMKEHKWGGW"
     gene            complement(25775..26248)
                     /gene="nuoE"
                     /locus_tag="ACFM6C_000139"
     CDS             complement(25775..26248)
                     /gene="nuoE"
                     /locus_tag="ACFM6C_000139"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HFC6157661.1"
                     /translation="MLSAESLKQIDIELAKYPADQRRSAIMGALRIAQTEKGWLAPET
                     IAFVADYIGISPAQAYEVATFYNMYNLEPVGKYKLTVCTNLPCALRGGMATGEYLKQK
                     LGIGYGETTPDGKFTLVEGECMGACGDAPVILVNNHSMCGFMTEEAIEKKLAELE"
     gene            complement(26248..27504)
                     /gene="nuoD"
                     /locus_tag="ACFM6C_000140"
     CDS             complement(26248..27504)
                     /gene="nuoD"
                     /locus_tag="ACFM6C_000140"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HFC6157662.1"
                     /translation="MANKLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLL
                     HRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMF
                     AEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGV
                     YRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETLLTDN
                     RIWKQRTVGIGVVTPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVN
                     GDCYDRYLCRMEEMRQSVRIIKQCVDWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI
                     HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDE
                     MAKGHMLADVVAIIGTQDIVFGEVDR"
     gene            complement(27494..28087)
                     /locus_tag="ACFM6C_000141"
     CDS             complement(27494..28087)
                     /locus_tag="ACFM6C_000141"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HFC6157663.1"
                     /translation="MASIQNLYETVIGVLGDQASKVISALGEITVECLPEHYVSIMTA
                     LRDHEELHFELLVDLCGVDYSTYKNEAWQGKRFAVVSQLLSVKNNQRIRVRVWVSDDD
                     FPVVESVVDIYNSADWYEREAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGY
                     VEMRYDEEQKRVIYQPVTIEPREITPRIVREENYGGQ"
     gene            complement(28100..28582)
                     /locus_tag="ACFM6C_000142"
     CDS             complement(28100..28582)
                     /locus_tag="ACFM6C_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045271 - respiratory chain complex I
                     [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HFC6157664.1"
                     /translation="MGIEGVLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMH
                     AGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSC
                     ANGGGYYHYSYSVVRGADRVVPVDVYVPGCPPTAEALIYGLIQLQQKIKRTSTIARDE
                     "
     gene            complement(28573..28929)
                     /locus_tag="ACFM6C_000143"
     CDS             complement(28573..28929)
                     /locus_tag="ACFM6C_000143"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HFC6157665.1"
                     /translation="MLSAYFPVFVFILIGLAAGVLFILLGTILGPKRHYAEKDAPYEC
                     GFEAFENARMKFDVRYYLVAILFILFDLEVAFMLPWAVVFKDLGAYGFWSMLVFIVVL
                     TVGFVYEWKKGALEWE"
BASE COUNT         7360 a         8033 c         7113 g         6606 t
ORIGIN      
        1 cactatacat cggtatttcc tttatttctg tcggttttca cagacagatg ccgtctgaaa
       61 cctggaaacg gcttcagacg gcatctgcac atcatctctt cggaaaaaac tgcaccacgt
      121 tctccccttg cggcagcatc agttttttca cggcgtgtcc gtacaccgtt tccagcgtaa
      181 tgcccaaacc gccttcccgt tcaaatattg tcccgacaca cgaacgcgcg gcgttttcat
      241 cgttccacgc catcgcccgc caaacgccca gcgtgtccat atccgcccaa aacgtttccg
      301 cctttttgta atccaacacc agcttcgccg tatcggtaac gggggcgtaa aagccgtttt
      361 cagcaagcat atcgcccaag tcgtgcatat cgggaaacat cacgctgcgg ctttcaatgc
      421 cgttttcttt cagacggcat ttcagttccg ccaaggtatc tcgcccgaag caggtaaaaa
      481 acagcagccc gtccgtcttc agcgcgcgcg cccaattttg cagcacgggg acgatgcttt
      541 ccgccgccaa cagtccgaga ttcgaccaca acatatcggc acacgcttcg ggcagcggcg
      601 cggtcgggga ttggcagtgc tgcaccacgc ccttacccgc aaacctttgc caaaaaccgc
      661 ctttgcgcgc ggctgccgcc gccgccaaaa aatccgcacg ggaatcgtat tcttcaaata
      721 ccgcctgcgg atagcgtttc gccagcaggc tgcggctgat gtccgcatcc gccccggcaa
      781 gcaggatatg tttgggcgcg ttgcggacga gtgtcaggcg ttggtcggca tattcggcga
      841 gatggcggtg aacctgccag catttgtcct gcggattcat gtcaaacccc ttcgacaaag
      901 tcgcggtaca gcgcggcaaa cgcttccgca tggctcaaaa acggcgcgtg tgccgccttt
      961 tccatcacaa ccagcctgct tcctttcaaa tgccgatgca gatactcgcc catgcgcggc
     1021 ggcgtaatcg cgtctttgct accgaacacc agcagtaccg gaacatctat cttgtccaac
     1081 aaatgccgcg catccgccct ttccgccgcg tccaaagctt cctgtaaggc ggagggtgtg
     1141 ccgcagcgcg ccaaatcggg caggattctg cctatgattc cgtccgcatc atgcgtatgc
     1201 aaaagctgta attgtagaaa ctgtttgata tgtttggcat aatccgttcg gaacgcgccg
     1261 accattttgc ccaatgcagg cgcggcaagc ccttcgggat agtcttcgtc agccgtcagt
     1321 cgggcgaaac tcgccgtcag gcagagcgaa cggactttgt cgggatggcg cgccgccaga
     1381 tacagcgcga ccaatccgcc gagcgaccag ccgagaatgt cggcgggcgt atcgatttgt
     1441 gcggcaacag cgtcggcggc tgcctcaata tcgaagggtt gcgcgaaggg cgcgtcgccg
     1501 tgtccgggca aatcgacggc ggacaccggc cacgttgcag gcagacgggg catcaggtcg
     1561 tcgaacacgt ggcggttcgc cccccacccg tgtatcaggt aaactttttt ggcagcatca
     1621 ggcatgaatt ttctctcttg ttggcggcgc atcgcagacg cgcccactat caggcgttgc
     1681 gtattatgcc acggttcgtc cggcgtttca gacggcatct gcgccggctg cgcggcggat
     1741 ttggcggcat accgcaccga cgcggcaaac agctgccccc tgtgtttcag acacatccaa
     1801 ggcggcgcgg tgtgcggcgg ctgtcagaaa aaaccgcccg cattcgaccg gatgtgggct
     1861 tcgctgcatt acgaaccgcc cgtcagcaat atgatacacg cgctgaagca cttggctgat
     1921 ttgagcatgg tgcagccgct ggcagacctg atgatgcaga atccgcccga ccggcttgca
     1981 gacgaatgtt tcgatttcgt cctgcccgta ccgctaagca gggagcggct gctgcaacgc
     2041 gggttcaacc aaagtgaaag catcgtcggg ttgttggcgc aacgctacgg ctggcggata
     2101 ctgccccgac acaccgtatt ccgacaccac cgcccgccgc aaagcacgct caaaggcagc
     2161 gaacggcggc gaaacatcaa aaacgccttt gaaatccgca caccgatacc ggaaaactgt
     2221 aatattttgt taatcgacga tgtctttacc accggcgcga cgctggacga attggcaaag
     2281 acgctgaaac aatcggacgc aaaccgaatc tgctgctgga cgctggcacg cacgccaatg
     2341 aaaaaataac taaatttttt gacaccccat ccgccttgtg gcaaggttac gcgcctataa
     2401 gtgattgata tttatgttta ccatcgtttt ataccagccg gaaatccctc cgaacacggg
     2461 caacatcatc cgcctgtgcg ccaataccgg cgcggatttg caccttgtca aaccgctcgg
     2521 cttcccattg gattccgcca aaatgaaacg cgccgggctc gactaccacg aattcgccag
     2581 cctgacggtg tacgaaaact tcgacgactg cctcaaggca ctcgcaggca ggcgcatttt
     2641 cgccctgacc accaaaggca cggcgcaccc cgatgaaacc gcgtttcaaa aaggcgacgt
     2701 tttactgttc gggccggaaa cgcgcggact gcctgccgac atcctcgaca gcctgcccgc
     2761 cgcgcaaaaa atccgcctgc cgatgcagcc cggcagccgg agtatgaacc tttccaatac
     2821 cgttgccgtg attctctttg aagcgtggcg gcaacacggt tacgcaggcg gcgtttgaac
     2881 gcaagttcat gccgtctgaa aacctatccg gacacattcc gaaccgccgt ccgcactgta
     2941 cggcggttcg gaacgtatcc ggcgggcatg atgcccattc gtcttcaact caagaacgga
     3001 acacgttttg actttaaccc gaaaaaccct tttccttctc accgccgcat tcggcacaca
     3061 ctcccttcag acgacatccg ccgacgcagt ggtcaaggca gaaaaactgc acgcctccgc
     3121 caaccgcagc tacaaagtcg ccggaaaacg ctacacgccg aaaaaccaag tcgccgaatt
     3181 cacgcaaacc ggcaacgcct cgtggtacgg cggtaggttt cacgggcgca aaacttccgg
     3241 cggagaacga tacgatatga acgcctttac cgccgcccac aaaaccctgc ccatccccag
     3301 ctatgtgcgc gtaaccaaca ccaaaaacgg caaaagcgtc atcgtccgcg tcaacgaccg
     3361 cggccccttc cacggcaacc gcatcatcga cgtatccaaa gccgccgcgc aaaaattggg
     3421 ctttgtcagc caagggacgg cacacgtcaa aatcgaacaa atcgtcccgg gccaatccgc
     3481 accggttgcc gaaaacaaag acatctttat cgacttgaaa tctttcggta cggaacacga
     3541 agcacaagcc tatctgaacc aagccgccca aaacttcgcc gtttcgtcat cgggtacgaa
     3601 cctctcggtt gaaaaacgcc gttacgaata cgtcgtcaaa atgggaccgt ttgcctcgca
     3661 ggaacgcgcc gccgaagccg aagctcaggc gcgcggtatg gttcgggcgg tattgactgc
     3721 cggttgatgt cccgccttta cgtctttcaa acaccaccag atacttcgca ggagcaaaac
     3781 atgaacttca aacgccttct cttgaccgcc gccgcaaccg cactgatggg catttccgcc
     3841 cccgcactcg cccaccacga cggacatggc gatgacgacc acggacacgc cgcacaccaa
     3901 cacaacaaac aagacaaaat catcagccgc gcccaagccg aaaaagcagc gttggcgcgt
     3961 gtcggcggca aaatcaccga catcgatctc gaacacgaca acggccgtcc gcactatgat
     4021 gtcgaaatcg tcaaaaacgg acaggaatac aaagtcgttg tcgatgcccg taccggccgc
     4081 gtgatttcct cccgccgcga cgactgaatt tgatacaatc cgtgccgtct gaagcccgaa
     4141 ccggtttcag acggcatttt gcacccgaca cttcaggatt cggcacacat gatcagcaga
     4201 ctgaccggca aactggttga aaaaaaccct ccgcaaatcg tcatcgatgt caacggtgtc
     4261 ggctatgagg ccgacgtatc gatgcagacc ttctacaacc tgccgcccgt gggtgaaagc
     4321 gtacaactgt ttacccagct tatcattcgg gaagacgcac atcttttatt tggttttgcc
     4381 actgcggaag aacgcaagac cttccgccaa ctgattaagg tcggcggcat cggcgcgaaa
     4441 acggctttgg gcattttgtc agcgatgacg gcagacgagc tggcgcgggc ggttgccgaa
     4501 gaagatgtca aacgcctgtc ttccgcgccg ggaatcggca aaaaaaccgc cgaacgtatg
     4561 gtcttggaac tgcgcggcaa gctggtcgcg catacggtaa cggacgggct gtttgccgcc
     4621 gcacccgccg ccgacgaaac ggaagacatc gtcagcacgc tgcttgcgct gggttacagc
     4681 gaacgcgaag caaaagcggc ggtcaaaggc gttccggagg ggacggacgt gggcgaaggc
     4741 gtgcgccttg ctttgaaaaa cctgctgaaa taatgccgcc tgaaggcggc gcggcgtttg
     4801 ccctgacgaa accctgcgtt tccgcctcgc gctgtcttcc cgacggcttt tcccgtaaaa
     4861 tggcgttatt gtccttcctt tcagacggca ttgtgtttga tgccgtctga aactgtttta
     4921 ccgaaatcga aaacaatgtt gaacaaaata ttttcctggt tcgagtcccg aatcgaccct
     4981 tatcccgaag ccgccccgaa aacgccagaa aaaggcttgt ggcggtttgt ctggagcagc
     5041 atggccggcg tgcggaaatg gatagccgcc ctggctgcgc tgaccgccgg catcggcatt
     5101 atggaagccc tggtttttca atttatgggc aaaatcgtgg agtggctcgg caaatacgcg
     5161 cccgccgaac tgtttgccga aaaaggttgg gaactggcgg caatggcggc gatgatggtg
     5221 ttttcggtcg tgtgggcgta tgccgcgtcc aacgtgcgcc tgcaaaccct tcagggcgtg
     5281 ttccctatgc gcctgcgctg gaacttccac cgcctgatgc tgaaccaaag cctcggtttt
     5341 tatcaggacg aatttgccgg acgcgtgtcc gccaaagtca tgcagaccgc gctggcgttg
     5401 cgcgacgcgg tgatgacggt tgccgatatg gtcgtttatg tgtcggtgta tttcattacc
     5461 tccggcgtga ttctcgcctc gctcgactca tggctgctgc tgccctttat cggctggatt
     5521 gtcggtttcg cttcggtgat gcgcctgctg attcccaaat tggggcaaac cgccgcatgg
     5581 caggcggatg cccgctcgct gatgaccggc cgcattaccg atgcctattc caatatcgcc
     5641 accgtcaaac tcttctccca cggcgcgcgt gaagccgcct atgccaagca gtcgatggaa
     5701 gaatttatgg ttacggtgcg cgcccaaatg cggctggcga cgctgctgca ttcgtgcagc
     5761 ttcatcgtca acacctccct gaccctctcc accgccgcac tgggcatctg gctttggcac
     5821 aacggacagg tcggcgtggg cgcggtcgcc accgccaccg cgatggcgtt gcgcgtcaac
     5881 gggctgtcgc aatacattat gtgggaatcc gcgcggctgt ttgaaaacat cggcaccgtc
     5941 aacgacggta tggcaaccct gtccaaaccg cacaccatcc tcgacaagcc ccgggcactg
     6001 ccgctgaacg tgccgcaagg cgcaatcaaa tttgaacaca tcgatttctg ctacgaagcc
     6061 ggcaaaccgc tgctcaacgg cttcaacctc accatccgcc cgggcgaaaa agtcggcttg
     6121 atcggacgca gcggcgcggg caaatccacc atcgtcaacc tgcttttgcg cttctacgaa
     6181 ccgcaaagcg gcacggtttc gatcgacggg caggacataa gcggcatcac ccaagaatct
     6241 ttacgcgccc aaatcggttt ggtcacgcaa gatacctcgc tgctgcaccg ttccgtgcgc
     6301 gacaacatta tttacggccg ccccgacgcg accgatgccg aaatggtttc cgccgccgaa
     6361 cgcgccgaag ccgccggctt catccccgaa ctttccgatg ccaaagggcg gcgcggctat
     6421 gacgcgcacg tcggcgaacg cggcgtgaaa ctctccggcg ggcaacgcca gcgcatcgcc
     6481 attgcccgcg tgatgctcaa agacgcgccc atcctgctgc tcgacgaagc caccagcgcg
     6541 ctcgattccg aagtcgaagc cgccatccag gaaagcctcg acaaaatgat ggacggcaaa
     6601 accgtcatcg ccatcgccca ccgcctctcc accatcgccg caatggacag gctcgtcgtc
     6661 ctcgacaaag gccgcatcat cgaagaaggc acacacgccg aactcctcga aaaacgcggg
     6721 ctttacgcca aactctgggc gcaccagagc ggcggcttcc tcaacgaaca cgtcgagtgg
     6781 cagcacgact gaaccgatgc cgtccgaaca cccgttttca gacggcattt ccacacccaa
     6841 ccccaaagaa accatgaacg acaccgccca aattaccgcc agctacggcc gccgctacat
     6901 tgtccgcacg cccgacggca caacctacga agccagcacc cgcaaaaaac gcgtcgattt
     6961 cgcctgcggt gaccgcgtcc gcatcagccc cgtcaacgcc gaacaagttg tgattgaaga
     7021 ttttttaccg cgccaaagcc tgctctaccg ccaagacgcg tggaaaacca aactcattgc
     7081 cgccaacgtt acccaactcc tcatcgtaac cgccgccgtc ccgagtccga gcgtgcggct
     7141 gctacagcgc gccctgcttg ccgccgaagc cgccggcatc cgcgccgtca tcgtcctgaa
     7201 caaagccgac ctgcccgaaa ccgccctttg gcgcgaaaaa ctcaaattct acgaaacgct
     7261 gggttatccc gtcatcgaaa cccgcgcact ggaaaacgcc ggcagcctgc gccccgccct
     7321 gcaagggcac agcaacatcc tgctcgggca gagcggtatg ggcaaatcca ccctgaccaa
     7381 cgcccttttg ggcagccaaa ccgcccgcac cggcgacatt tccgccgcac tcgactcggg
     7441 aaaacacacc accacccacg cccggcttta tgatttgaac ggcgaaaccc aactcatcga
     7501 ctccccgggt ttgcaagaat ttggtttaca ccacctccaa gccgccgatt tgccgcgcta
     7561 tttccccgat ttccgccacc ttgtcgggca atgccgcttc cacaactgca cccaccgcgc
     7621 cgaacccggc tgcgccttca aagccgccgc cgaaaccagg gcggcaagcc ccgaacgcct
     7681 cgcctttttg cagggcatca ccgacgaact gcccgggtaa cgccttgccg tttgcaggac
     7741 aaaacaatgc cgtctgaaac cggattcggg tttcagacgg catccgtttt tcaaaaatgc
     7801 tacaatccgc tttttaccgg aacatccgaa actatgttcc aacacgcagg acgacactta
     7861 aagcaccgcc ctatgtgtcg tcctgatttg gaagggctta cacccctccc aaataaagtc
     7921 tgattctacc gccccgaagg acagatgtcc aagtggcggg gtttcaaccg aaaaggaaac
     7981 acgatgaaga aaaacgcccc gaaatcgttt gaagaagcct tgtcgcgcct tgaatcgctg
     8041 acacaagcta tgcagggcga aatgcccttg gaagacgcgc ttgccgccta tcaggaaggc
     8101 aacgagctgg tcagatactg ccaaaccaag ctggcgcaag tcgaacagaa attacaggtt
     8161 ttggatgtgg acgggctgaa ggagttgaac cttgaatccg acgaatgatt tgaaagcgtg
     8221 gcaacagagg gcgcaggcac agacagagct gctgctggaa cgctttttgc cgtctgaaaa
     8281 cgaaatcccg cacacgctgc acgaagcgat gcgctatgcg gctttggacg gcggcaagcg
     8341 tctgcgtccg atgctggtgc tggcggcttc ggaattgggc ggagccgtgg cggatgcggt
     8401 cggacaggca atggcggcaa tcgaaatgat ccacgtctat tctttggttc acgacgatat
     8461 gccggcgatg gacaacgaca gcctgcggcg cggcaaaccg acttgccatg tgcaatacga
     8521 cgaagccacc gcgctactgg tcggcgacgc tttgcaaacc caagccttcg acgtgttaag
     8581 ccgtccgaca gaactgcccg cagcacgcca gttggcaatg ttgtcggtgt tggcgaaagc
     8641 gggcggcagc gcgggcatgg cgggcggtca ggcaatcgat ttggcgaatg tcggcaaaca
     8701 aatggttcaa gccgatttgg aacagatgca cagcctgaaa acgggtgcgc taatccgtgc
     8761 ggcggtttta ttgggggcga tgtcctgccc gaatctgtct gaagacagtc tggcggtatt
     8821 ggacgattat gcggcaaaac tggggctggc gttccaagtc attgacgatg tgttggattg
     8881 tgaagcggac acggcgactt tgggcaaaac ggcgggcaaa gacgcagaca acgacaagcc
     8941 gacttatgta aaactgatgg gcttggacgg tgcgcgggca tacgcgtacc aactgaccga
     9001 cgaagcagtc tcgctgctcg aacccttcgg cgacaaagcc ctgcgcctgc ggcagttggc
     9061 agaatttgca gtcgcccgca aatattaaaa ccggcgtata tcgccggctg aaacgtgccg
     9121 gcacagcgat gccggcctgc acttgaatga aacaaatgcc gtctgaaaag gtttcagacg
     9181 gcatttttat gcttgtctat tccctgttgc gcgtgtgcca aaaataccgc cacacgaaac
     9241 agggaaacgc aaaaatcagg tacaggcaga cgacggtggc gtaaaactcc caaccctgat
     9301 cgtgtaccgc tcccgcacgg gattcgagga tgtaggcaag aacggcggtc agcgcgaaac
     9361 ctgccgccag ctcgatcaag tggtgcccga aatgtttgcg cttgagcggt acgatgccga
     9421 acagcctggt cgtgaggaag ggggcgttgg caaaaatcaa ggcaagcagc aaaaggatgt
     9481 acatggatgc ggtcatggcg ggctttctgt ttgggcattg tcggcggcga tgccgtctga
     9541 actgcgttgc ggaacggcat atcttaacaa aaacggcagc ctctgacacg gctgccgttg
     9601 cggcggctta cagcgtgttt tccaacgcct tggcgcacca gtcgataacg gtttgcggca
     9661 taatgcccca cagcaccaac agcagcgcgt tgacgctcaa aaggaatttt gcggcattgt
     9721 tgccgccgac ggtgggacgg gcgcggccgg attcgtcaaa atacatgact ttgaccacgc
     9781 gcaggtagta gaacgcgcca atcagcgaca tcacgacggc aaatacggac aaccaaacat
     9841 agccttgttt taagagtgcc ataatcacgc cgaatttggc gtaaaagccc atcagcggcg
     9901 gaatgcccgc catagagaac ataaccagca gcatcaaaaa ggcaagccat acgcggtgtt
     9961 ggttcaaccc tgccaaatcg ctgatgtttt cgcactcgtc gtccccgtcc gacaacacca
    10021 tcaacacgcc gaaccctgcc gccgccatca gcgcgtaggt aatggcgtaa tagaggcccg
    10081 ccgcaaagcc gaccgcgccc gccataaacg ccaacaggat gaaacccata tgcgatacgg
    10141 tggaataggc gagcatacgt ttgatattgg tctgcatgat ggcggcaagg ttgccgacca
    10201 gcagcgaggc ggcggcaagc agggcaaaca tcagagacca gtcatgatgc acggttccca
    10261 gcccggtaac gaggatgcgg aaagcgaaaa cgacggcggc gattttcggg gcagtgccga
    10321 ccaaggcggt aacagaagtg ggcgcgccgt gatacacgtc gggcacccac atatggaacg
    10381 gcaccgcgcc gagtttgaac gcaacggcga cgacaataaa caccaaaccc agtttcaaca
    10441 gccattcatt ggcttcttca ttgaaggaag aggcgagcac gccggcaaat tccagcgaac
    10501 cggttgcgcc gtaaaccata gaaataccgt agagcagcag gccggatgcc agcgcgccca
    10561 aaacaaaata tttcaaggcg gcttcggcgg caaagccgga atcgcggcgc agggcaatca
    10621 gggcgtaaag ggcaagcgac aagagttcca aaccgatata ggcagttaaa aaatgccccg
    10681 cgctcaccat cacgctcatg cccaagaggg caaacagcga cagggtgtaa aactcgcctt
    10741 tgaaaatacc gcgcacttgg ttgtagggct tggcataaac aaacagggca aacgtcaagg
    10801 catataaaac catttttgcc aaacgcgaca taccgtctgc aatatacatg ccgttgaacg
    10861 aagacgtgct gccctgttcc caaacggcaa gctgcaccac agccgtaacc gccaccgttg
    10921 ccaacgcgcc gtaatgcgtc caacggcgtt tgtcatcact gacccacaag tctgccagca
    10981 acaataacac cagcagcgac agcagcgcga cttcgggcat ggcgggcatt aaattcaaat
    11041 cagaccagtt catttacaca cctcaaatct tgctttgtgc cacatgggca atcaaatcgt
    11101 ttgccgcctg atgcaccact tcgataaacg cttgcggata cagacccata cccaatacca
    11161 caaccgccaa aatcgccaga atcgcaaatt cgcggcagtt gatgtctttc atttcggcaa
    11221 cgtgcggatt gtggatcgcg ccgtaaatca cgcgcttgta catccacagg gtataagacg
    11281 caccgtaaat caaggtcata gccgccagcg cgccgaccca gaaattcact ttgaccgcac
    11341 ccataatcac cataaactcg cccacaaagc cggaagtcgc aggcagaccg gcgttcgcca
    11401 taccgaacaa catcataaac gccgcaaact taggcatcac attgaccacg ccgccataat
    11461 cggcaatatt gcgggtatgc aggcggtcgt acatcacacc gatgcacata aacatcgccg
    11521 ccgacacgaa accgtgggaa atcatctgaa tgaccgcgcc tttcaatgcc cagtcgtcca
    11581 actgcccgtc aacaaacaaa aacatcccaa gcgttacaaa acccatatgg ctgatggacg
    11641 aatacgccac cagttttttc atatcggttt gcaccaaagc caccataccg atataaatca
    11701 cggcaatcag actcaatacg atgatcacgg gggcaaaata gcgtgccgca tccggcataa
    11761 tcggcaggat aaagcgcaag aaaccatacg cacccagttt cagcgtaatc gccgccaaca
    11821 ccatcgaacc gccggtcggc gcttcaacgt gggcatccgg cagccaagtg tgtacgggga
    11881 acatcggcac ttttacggca aacgacagga agaacgccgc aaacaaaagc tgctgtacgc
    11941 ccaacggaat ctgtttaatg ttttggaaat cgacaataga gaagctgcct gtttgatagt
    12001 acaggtaaac catagcaacc agcatcagga gcgaacccat cagcgtatag aggaacagct
    12061 tgaccgacgc atagacgcgg cgcgggccgc cccatacacc gataatcagg tacagcggaa
    12121 tcagcatacc ctcgaagaac acataaaaca gaatcgcatc ctgcgcggca aacgcaccgt
    12181 taatcaaacc cgacatcatc aggaatgccg ccatatactg cgccgggcgt ttctgaataa
    12241 cttcccaacc cgccagcacc accaacagcg taataaacgc attcaagatg ataaagagca
    12301 ctgaaatacc gtccacgccc aatgcatagt tgattttcag cagcggaatc cactcgtgga
    12361 actcggtaaa ttgatagccg ccgctcaaac ggtcgaaacc ggtaaacagg ggcagcgtta
    12421 ccaagaaacc ggcaagcgca cccataaagg caagcacacg cgccagcggc gcacggctgt
    12481 ccttaccggt cgacaaaacc agcacacctg cggcgatggg tatccatatt gccaagctga
    12541 gtaggtagtt ggaaaacata gtggttaacc tgtggttaaa ataaaaatat cgtagtgcgg
    12601 gttagtttgt cagacgacgt ttcaggaggt cgtctgaaaa agggatgaat actctctccc
    12661 ctctttactc actcccaatc aatatctgta ctatcgcgat attctgcctg cactaaaaca
    12721 tctaattcag ccaaattttt tatttctgac tgcattgcta gtaaagctct taacttcata
    12781 cttaaatcaa tatatctaga gccttcactt gctccttttg cagacttaaa tttatttttt
    12841 tctaaaaatt ttttaatagg agcgtttaac actggatatc tatctggata ttcttgacaa
    12901 agcatttcag aaaaaactga accacgagtg gaaactccac attcttttag ccaatcaatt
    12961 tgcttggcaa caacattatc tctctcagca agtggtgcat caaaaactga ttggatagca
    13021 atgcataatt ttctaaaatc tgaagacttt ccggtccttt tccacgtttg atcttgaaat
    13081 cgattaccta ccccttctcc tttattttcg cttttccaag accataattt attaaattcc
    13141 acataaaact catcattgtc tatctttcct gcagcacatt gcttaataag actttttaat
    13201 tgattacaca cagtttgatg gtttctcatc tgttttctcc gtgctgcaat cagttcttga
    13261 ttataatttg gcatttccat aaataactta tccatcaatg attggctaac agttgatttc
    13321 ttataattaa tttcagcttc ctgatactcc tcaagccaat cttccgatac tgggatagat
    13381 ttcatcgcaa tttcatcagc ccaagatttg acttttataa aatcctgctc ggaaatttta
    13441 gtcaaaatat ttgcttcata attgctatta aacgcagcat gagtcaaatt tgaagaaccg
    13501 attaaagcat aatattcatt cttatcattc ttccaaaata cagctttagg atgaaaaccc
    13561 tgaatgcctt gagctaccat cagtgtgaat ttcaaatggg acggaagcca tttcaacact
    13621 ttccgaatag cctctttttt agacaatccg aaatcttgtc caaaaataaa tttaaactct
    13681 tgcaatttgc tattgagctt attttttaca tcccaatgag tgagatacgc agagaaaata
    13741 tacagctcta ctgcctctga aacagctttc tcatatattg aaatcagttc cttctcattt
    13801 ggtgtatctg aatgtaaaaa taactgtgtc atcccttttg actcctctat atttgttgag
    13861 attgcctaaa aaatttagga aacagataat ttgcatgttg gctatttcac gcctgttggg
    13921 taccattttg ttccaccctt tgacttaatg cccacttctc aaacttttca gacgacctct
    13981 acaaaactat gaacaggtcg tctgaaactc cgcctttatc tgaacaatcc ccagaaggtc
    14041 atgccgagca gtaccaatac gccgaatacc atagcggcag cgtaagtgta gataaagccg
    14101 gtttgggctt tacgcacttg cgcggcaatc gcgccgacca gtttggcaga gccgttgacg
    14161 atgccgttat cgataatggc ggtatcgccg actttccaga agaaggtacc cagtgcgcgc
    14221 gtgcctttag cgaagacgtt gaaatacagg gcgtcgaggt agtatttgtt ttcaaacaaa
    14281 acgtaaaccg gacggaacgt ctgtgcaatt ttcgctggca ggtgcggcag tttgacgtac
    14341 aaaagccatg cgctcaacac gcctgcgata gcaaggtaga gtacgggcga atgcaggctg
    14401 tgcgacacca ttgccaatgc gccgtggaac tcttccttca tgatgtgcat ggtcggatgc
    14461 gcgtcggcgt tgacgaaaat cacatctttg aagaaatcgc cgtaaagcat aggctcgatg
    14521 gcaacgtagc cgatgatgac ggacggaatg gcaagcaaaa tcaaaggcag ggtaacgaac
    14581 agcgggcttt cgtgcggatt gtcgtttttg cccaagccgt gatgttcttc gccatgtccg
    14641 tctgaatggt gttcgggcag gctgcgccat ttctcttcgc cgtggaacac cataaagtat
    14701 tggcggaacg cgtaaaacgc ggtaacgaac acgctggcaa ggacggcaaa ataggcaaag
    14761 ccgctgccgg gaagggtgct gtatttcgcc gcttcgataa tcgaatcttt ggagtaaaag
    14821 ccggagaaga acggcgtacc aatcagcgac aagttaccga tcaacatggt caaccaagta
    14881 atcggcatgt attttttcag gttgcccatg tggcgcatgt cttggtcgtg atgcataccg
    14941 ataatcgcgc tacctgcggc caagaacaac aaggctttaa agaaagcgtg ggtcatcaca
    15001 tggaacatcg ccacggaata ggcagacgcg cccagagcca cggtcatgta gcccagttgc
    15061 gacagggtag aatacgcaac cacacgtttg atgtcgtttt gaatcacgcc caaaaaaccc
    15121 ataaacaggg cagtaatcgc accgattacc atgatgacag acagcgcagt gctgctcatc
    15181 tcataaatcg gcgacatgcg cgacaccatg aacagacccg ccgtaaccat cgtcgcggcg
    15241 tgaatcaatg cggaaatcgg ggtcgggcct tccatcgaat cgggcagcca gacatgcagc
    15301 gggaattgag ccgatttacc cattgcgccc acaaacaaga gcaaacaagt tacggtaatc
    15361 aaagaccatt ccacaccggg gaaaagctgg atggtggcat tttggacgtt gggcagatag
    15421 gcgaatacgt cctgatagcg caggctgccg ccgaaatagg caagcaccaa gccgataccg
    15481 agcaaaaagc cgaagtcgcc gacacggttg atcaaaaagg ctttcaggtt ggcaaatgtt
    15541 gcgcttggac gtttgaaata gaaaccgatc aagagatacg acaccaaacc cacagcttcc
    15601 cagccgaaga agagctggat gaagttgttg ctcataatga gcatcaacat gctgaaagta
    15661 aacaaagaaa tgtagctaaa gaagcgttgg taaccgactt tttcatcgtg catatagccg
    15721 atggtataga tgtgtaccat caacgatacg ccggtgacca cgaccatcat catcgccgtc
    15781 atcgtatcga ccaagaagcc gacggagaaa tccaaaccgc ccatcgtcag ccaggtatag
    15841 acgttttcgt caaacttggc gcggctgccg tcgataaagc cccacagcac ataagccgac
    15901 aacacggcag acaccgccac accgagtatc gtaaccgtat gcgcgccggc acgtccgatt
    15961 ttgttgccga acaaacccgc gatcagtgag cctgccaaag gcacaagggc aatgatgaga
    16021 tataaagtca tgtcgttcat ttgattgaat ccgattgatt taaaaatcta tgtttgtttc
    16081 gtacaaaatt acttcggaaa aacaaatcca acacgctcca atcgtttgcg tgccacagct
    16141 aattgctctt cagtaaataa atcacaccac ggcttttgta acaccagata ttccatactg
    16201 tatttcaagg cgtggactcc gccaccactc aaaatcagct ctgtaaaacc ggtctgagtc
    16261 ttcttttccc ccgtactcaa taatttatcc gccgcctctt taccaccaaa ttcatttaca
    16321 atttgtaaaa atcgtgtcgc cttgtaaggt tgcggcaaat tcaaagcctc ctgataaata
    16381 tttaacatgg ctttatgaaa ttcttgttct aactgatttt tatccatcat tcttcttcca
    16441 atatttcaga ccggattatt cttacccaga atttcttttc tcatccgctc ccgtctgatc
    16501 acctaccaaa tcaggtcgtc tgaaacaatc tgaaatcgct tttcagacga ccttcagcct
    16561 ttttcatacc cttcgtaata atatgactgc tcgatacctt taaagatgat ttcacggttg
    16621 tccacatcgt cggtcaggtt gtcctttaac aaaaagcgca gttctaaatc gttgacgggg
    16681 ctgcgttcca tcgcctgcaa atacagggtt ttgcttacat tttgccagtt cacgactttt
    16741 ttcaggtttt tcttcagcac caaatccagc cagatgcggg tacttctgcc attaccctcc
    16801 aaaaacggat gggcaatgtt catttcaaca tatttggcga tgatttcttc aaaagtccgc
    16861 tcgggcatct gctcgatttt aaccaaagcc tcttttaaat acatggcgtt ggcaaaacga
    16921 aaaccgcctt tggaaatgtt gtcttccctg atttgacccg caaaatcata taagccgccg
    16981 aacaggtaac ggtgaatctg ttgcaggccc gcggtggtac cgacttcgat acggtcgatg
    17041 tcgccgcttt caaacaggcg gcgggcatta tgcaggcttt gttcgtctat ggatttcatc
    17101 gtttttccta tcgggttttc agacggcatc ggtgtcttgt caggtctcga cccaacctac
    17161 ctttaccctt tcaacccatc caaatcggca acattaatcg tttgtcggtt gcggtacacc
    17221 aataccataa tcgccaaacc gatggcggat tcggcagcgg caacggtcaa tacgaagaat
    17281 acgaaaattt gtccggcagt atcgcccaaa tgttgcgaga aggcgataaa gttgaagttc
    17341 accgccaaga gcatcagctc aatggacatc aacaatacca gcacgttttt gcggttcata
    17401 aagataccca ttgcgctgat accgaacagg agcgcaccca ataccagata atgcgtcaag
    17461 gtaatcatgc tttgccctcc ccttccggct tgaggccgtc tgaaacttcg ctttcttcgg
    17521 cagattcgac ttgcggtttg accgcttcca ttttcaccag acgcatacgg ccttgatcgg
    17581 cgcgtacttt aacttggtct gcagggtcca tacgtttcgg attaaccgtt ttacggtgaa
    17641 ccagcgcaat cgccgccacc atacccaaca gcagcaatac cgcagccaat tcaaacggca
    17701 acagatagtc ggtataaata cggctgccca aatcgcggat attgttgtaa tcggccggaa
    17761 tgtctttcat caggccaaat gcggcaaggt cggttttcgg gttgaccaaa atcagaatca
    17821 gggcaaccgc caacaacgtg ccgaccacac cggcaacagg cgcatgccgc cagaaaccgg
    17881 cacgcatttc ttcaatgtcg atgttcaaca tcatcacgac gaacaggaac aacaccatca
    17941 cggcgccgac gtaaaccacc accagcgtaa cgcccaaaaa ctcagcctgc atcagcatcc
    18001 aaagcatcgc gctcacgcag aaggtcagca ccagatgcaa agcggcgtga acggggtttt
    18061 tagcgatgac ggttttgagc gcgccataga gaattatcac tgcaaaaata taaaataaaa
    18121 tcagttggaa agtcatagtc tatgctttct ttattaatca aaaatatggt ttcaagcagt
    18181 ctgaaaatcc tggttacgca aacaatcaaa cttaatcagt tgatccatat ccgcacaaat
    18241 ccacgttgtc gcaattttga ataacaacat ttctatgtga tacggttttg cttgtttacc
    18301 ataaacttgt ttcgccaaat cttgtaacaa tccacaatat tgatgaaacg aaacgtctgg
    18361 tttccgataa tttggtttga tatcagaaaa atgaaacaat acgttcatat ttcggatttc
    18421 tagttcccta tttctacctt gtggctgaaa aaacaaatct gcatttgtaa atttaaacaa
    18481 caaccaattc aacgaaaaaa tagcgcgtga atcataaatg gcgaatcgct cacaatctat
    18541 aaaagaagcc aatttagata atgatgaaat tttcaacaaa ccaatactca attttcccga
    18601 attaagttcc gataaaaatt gacgaataag ctggctattt tcagcagatt gtttaaaact
    18661 tttaatccca ccccattcac ggataatcca ataatgcgtc ttcaagctat catcattttg
    18721 taattttggg gataaatttt cttttaaaaa aatattttgt tcaaaattac ttaatccact
    18781 tggcaactca atcggactat ttctaattct aatttcttca aaattatcta ttggctcatg
    18841 tttggctaaa tatttcaatg cattaatcag tccttccata tttaaagcct tccaagaagc
    18901 ccaaaagcat taacgatacg gcgcgtcagc ggctttacgt ttggcgattt cggcttcgta
    18961 tttgtcgccg attgccaaga gaatcggctt ggtcatgtgc aagtcgcctt ttttctcgcc
    19021 gtggtattca aaaatatggg tttctacaat cgcatcggtc gggcaggcct cttcgcagaa
    19081 accgcagaag atgcacttgg tcaggtcgat gtcgtaacgc ttggtgcggc gggtgccgtc
    19141 ttcgcgttct tccgattcga tgttaatcgc cattgccgga cacaccgcct cgcacaattt
    19201 acacgcgatg cagcgttcct cgccgttcgg ataccgccgc tgcgcgtgca gaccgcggaa
    19261 acgcacggat tgcggcgttt tctcttcggg aaaataaatt gtgtctttgc gggcgaaaaa
    19321 gtttttgagc gttacgccca tgccttttac caactcgccg agcagaaagg tttttactaa
    19381 gttagccata ttatgttccc tcaaaacagg gatttcgtta ggtattcaaa atcgctttgt
    19441 tcagacggcc tcaagatgcc gtctgaaact tatttccaca aattcagcgg tgaaatcatc
    19501 cacacgccca aaatcacgat gtaggcgaag ccgatcggaa tcagcacttt ccagcccaaa
    19561 cgcatgattt ggtcgtaacg gtagcgtggg aaagttgcac ggatccacag ataccagtac
    19621 agcaccgccg ccattttcac gaacatccag aatgcggaag gcgtaccgat aaagccccag
    19681 ctttgcggga acggagacag ccagccgccg agaaacatca gcgatgtcag cgcggcaatc
    19741 agaatcatga aaatgtattc ggcaaggaag aacagcgcga atgcgaagcc ggaatattca
    19801 acgtggtgtc cggcaacgat ttcggactcg ccctctgcca cgtcaaacgg tgcgcggttg
    19861 gtttcggcaa cggcggaaat cagatagacg atgaagattg ggaacagcgg cagccagttc
    19921 cacgagaata cggaaccgcc cgcgatacct tttgcctgcg cggcaacgat gtcggagaag
    19981 ttcatgctgc ccgacaccat cacgacacac accagcgcgg cactcatggc aatctcgtag
    20041 gaaatgcttt gtgcggaagc acgcattgca cccaagaacg aatatttgga gttggaagcc
    20101 cagcccgcga tgatcacgcc gtaaaccgac agcgaggtaa tcatcagaat gtacaaaaga
    20161 ccgatattga tgttggtcag cacccattct tcgttgaacg gaatcactgc ccatgccgcg
    20221 aaagacggag caagcgacat aatcgggccg atatagaaca gggctttgtt tgacagcttc
    20281 ggacgggtta cctctttaaa caagagtttg aacacgtcgg caaacggctg aatcagaccc
    20341 catgggccgg ttacgttcgg accgacgcga agctgcataa agccgatgac tttacgttca
    20401 aaataagtca ggtaggcgac ggtcagaata agcggaatca gaataatcac gattttgacg
    20461 atgacggata ccaccaagcc tacggtgatg cccaaatcgc ccagaccgag cgttgcggca
    20521 aagaggtttt ggaaccattc ctgcataatc aagctcccgc cagttcaata gtgtccatca
    20581 acgcacccag cgcggcattt tcggtatgca gcggcagatg caccacgttt tcaggcaaac
    20641 cggcatcggc tttgactgca accgatacgc ctgcgccgtt ttgtttggcg acggcggttt
    20701 gtccgtcttg caggcccaag cgtgccaatg tgttcggatt tacacgcgcg gcaggcacgg
    20761 cggcatggct ggtttcttgc aacggtacgg aacggcgcac gatggcatcg gtgtgataga
    20821 tgcccactcc gcccacgcgc acgaggcggc ttgatgccgt ctgaaaatct ttttgagtcg
    20881 aagacacgcg gttgtccagt ttggacggca ggctttccgc gtccagcgcg tctttcagaa
    20941 tcgcagcggt atcgtgatat tcaaaacctt tcaggtcaaa caggttgccc aatacgcgca
    21001 acactttcca cagcggacgc gagtcgccga agccttgtac cacgccgtgg aaggattgca
    21061 gacgaccttc catattgatg aagctgcccg aggtttcggt aaacggcgca atcggcaaca
    21121 acacgtcgca cacatccagc agcgtttcgc tgacaaacgg tgtaaacgcc atcacgcttt
    21181 tcgcctgttt caacgcggcc acggcttttg aaccgtcaac cgtatcgatt tccggctcga
    21241 cgttgagcag caagactgcc tgtttcggcg cgtttgccat ttcggtaacg ctctcacctg
    21301 agttcacgcc caatacgtcc gcaccgacgc tgttggcggc ttgcggcaaa atacccagta
    21361 ccgcgccggt tgcatccgcc agctcttgcg cggcggcata aatggcggcg taatcaggat
    21421 ggttttgcac ttccgcgccc aaaatcaccg ctgctttttc agcgtttttc aggctggcgg
    21481 taacggcgtg ttccgcattg gcagacaggt ttttcagacg gcctgcccac tcgtcgggat
    21541 gtgcggcttc ttgagagaga agcggcatca acaactcttc tttactgccg gccaatacac
    21601 tcaacgccat acggtctttg gcggcgcggc gcaggcgggc ggtcaggagc ggctgttctt
    21661 tgcgcaagtt cgcgccgact accaatacgg catcgttgtc agccaaagat tcaatgcttt
    21721 gtcccaacca ttgcgcacct ttaatgccgt ctgaaagacg tttgtcttgt tggcgcagac
    21781 gggtggcaaa gtttttaaca cccaaaccgt cggcgagttt tttggccaga tacagctctt
    21841 caaccgtatt catcgggttc gcccaaatgc cgacttggtt ttggttgccg tctttggcga
    21901 tacattcaat cgcgctgcgg acatattcca acgcggtttt ccaatccacg tccatccact
    21961 cgccaccctg tttgattttc gggtttttca gacggctttc gtgatacagg ccttcatagg
    22021 cgaaacggtc gcggtcggac aaccagcatt cgttgatggc ttcgttttcc aacggcaaca
    22081 ctcggcggac ggtatggtct ttggtttgca caatcaaatt gctgcccaaa gcgtcatggg
    22141 cggaaacgga tttgcggcgg ttcaattccc aagtacgcgc gttgaaacgg aatggtttgc
    22201 tggttaatgc gccgacagga cacaaatcga tgacgttgcc cgacaattcg gtttccaccg
    22261 ctttgccgat aaaagacatg atttcggaat gttcgccgcg attcgccatc gcgatttcct
    22321 gcaaaccggc gatttcttcg gtgaatcgca cgcaacgggt acagtggata cagcggctca
    22381 tctcctcggc ggaaaccaaa ggacccatgt ccttgccgac gacggaacgt ttttcttcgg
    22441 tatagcggct ggtggttttg ccgtagccca ccgccaaatc ctgcaactgg cattcgccgc
    22501 cttggtcgca ggtcggacaa tcaagcggat ggttgatgag caggaactcc atcacgcctt
    22561 cctgcgcctc ccgcgccttc gccgaatgcg tgcgcacaat catgccgtcc gttaccggcg
    22621 tagcgcaggc gggcagcggt ttgggggctt tttccacgtc caccagacac atacggcagt
    22681 tggcggcgat ggaaagtttt ttgtggtaac agaaatgcgg aatataagta ccgagcttgt
    22741 gcgcggcttc aatgaccgtc gcgccctgct ccacagatac ctgtttaccg tcgatttcga
    22801 tttgtaacat ggttcgttcc tagttacggg tatttgataa ataatctttt atggaggtcg
    22861 tctgaagaat gggtttcaga cggccttttg agtttcattg acaatcaata ctgtttaaaa
    22921 cgtttactgc caccttgccg tcattcccgc gtaggcggga atccattctt gggttttcgg
    22981 taactgtttt caaacattgg tttcttaact tttgcggtga ttcccgccgt agcctgtctg
    23041 cgcgtaggtg gggctggaat aacgacagtt tttaaagttc cagaaataaa actaaacaaa
    23101 caacacgccc gacaagtcca accattcagg attttgttct tcaatcagtt taatcttcca
    23161 ttcacgtcgc cattttttca tcgttttttc tttggcaact gcttcaggca tattctcaaa
    23221 aaactgatac caaactaaat catgcacatc atatcgagca gtaaagccat caatattgac
    23281 atggtttttg tgctgccaaa ccctttccgg caaattcatg gtaacaccga tatagagtgt
    23341 tccattttta ccgtttgcca aaatatatac ggcaggttgt ctagtaagcg gatggtttcg
    23401 tattcatttt tcctgcaata taaacaacaa cttttttaat atcatttaca accgttttca
    23461 tctgaaaaca tctgcctact cccgccgtca ttcccgcgta ggcgggaatc cattcttggg
    23521 ttttcggcaa ctgcttttca aatatcggtt tctttagatt ccactatgga ttcccgccta
    23581 cgcgggaatg acggcaaagt taaattttta gcattttgct tttaaccaat ataaaaccaa
    23641 ctaaaactat aactcattta ttatattttt aaatgactta aataactctt taacagcacg
    23701 ctcattgtct tcatctgtag gctcaaactt ttcacaccaa ttaattatat ttacatcgcc
    23761 atgcaataac tctgcataac atcctactgc atcgcaacta ccaccccgtg tccttgacgt
    23821 gccaaaaata aaatcacaat tatgcgaata aagtttgtat aaatttctcc taacctcgta
    23881 ttcattatca ccagatgaat aaaaaccaat cctctgacct tcatgatcaa atactgcaac
    23941 aaaatctaag ccgtttccat gtctttcaaa aaagactaga aatttagaaa atttccgaca
    24001 aatctgatta aaaagcgtat tgagtgtcgt actcttacct ttgttggctg caccgtatag
    24061 aataaaaatt ttagcttcca ccattaccac cctccccact tatgctcttt catcggtccg
    24121 ccgtgttcga tgtaatgcac aaactcatca cggaaatgct tggtaaagct gcggacgggg
    24181 aaaacggcgg catcggcaag ggcgcagatg gtgcggcctg ccatttgatt gccgacggaa
    24241 tccagcaaat ccaaatcttc cattttgcct ttgccttcta cgatgcggtg gacgatgcgg
    24301 tagagccagc ccgtaccttc tcgacaaggc gtacattgac cgcaagactc gtcatagtag
    24361 aagtagctca gacgctcaag ggctttcacc atgcacacgt cttcgtccat gacgataatc
    24421 gcgccggaac ccaacatcga gcctgcttta gaaatcgagt catagtccat attggtctgc
    24481 atcatgatat cggcaggcaa tacaggcgcg gacgaaccgc cgggaataac ggccttgagt
    24541 tttttgccgc cgcgcatacc gcctgccatt ttcaagactt cggcaaacgg tgtgcccaat
    24601 ggcacttcat agttgcccgg acgctcgaca tggccggaaa tacagaataa tttggtaccg
    24661 cctgcattcg gaataccttt atcggcaaat gcctgtccac cgtcacggat aatgaatgga
    24721 acggaggaga acgtttcagt attgttgatg gtagtcggtt tgccgtacag gccgaacgaa
    24781 gcagggaatg gcggcttaaa gcgcggctgg ccttttttgc cttccaacga ttcgagcaat
    24841 gcggtttctt cgccgcagat gtatgcgccg tagccgtggt gggcgaagag ttcgaattca
    24901 aaatccgaac ccaaaatatt tttacccaaa aagcctgcgg cacgcgcctg ctccaaagcg
    24961 gcctcaaagc gttggtagcc ttcaaaaatt tcgccgtgaa tgtagttgta gcccgctttc
    25021 gcgcccatcg cgtaaccggc aataatcata ccttcaatca gggcatgcgg attgaacatg
    25081 atgatgtcgc ggtctttaaa cgtacctggt tcgccttcgt cggtgttgca aaccacatat
    25141 ttttcgcccg ggaaagaacg gggcataaag ctccatttca aaccggtcgg gaagcccgca
    25201 ccgccacgac cgcgcaagcc ggaggttttg acttcgtcaa tcacatcggt ttgcgagatg
    25261 ttttcggaca gaattttacg cagggcggta tagccgccgc gtttgacgta ttcgtccaat
    25321 gtccagcaat cgggattggc ggtatccact tggtcaaaaa tcacgcctga ttggtaaata
    25381 gccatttttg gtgtgcctgt ttgttttcgt atcggttgcg gccgctgttt cagacgacct
    25441 taagatgtct ttgtgtatcg gcttgtaacg tcgtctgaaa taaaatctag tttatcaaat
    25501 cgatattttc agacgacctt taatcgtttt tgttggatct cgaccacttg cttgtctgtc
    25561 gtcattcccg cgcaggcggg aatccatcct caatggtaaa caatgtctta ttaaattcag
    25621 aaaccgaatc ttaccggtgg attcccgcct gcgcgggaat gacggcattt cggtatttca
    25681 gtagggcgga ttcttaaatc cgacattttg cctttttacc cactctgtcg gatacaagta
    25741 tccgacctac atttaaatcg tcgtttcaga cgacctactc caactccgcc agtttcttct
    25801 caatcgcctc ttcagtcata aagccgcaca tgctgtggtt gttgaccagt atcaccggcg
    25861 cgtcgccgca cgcgcccata cattcgcctt cgacaagggt aaatttgccg tcgggcgtgg
    25921 tttcgccgta gccgataccg agtttttgtt tgaggtattc gccggtagcc ataccgccgc
    25981 gcagggcgca gggcaggttg gtgcagacgg tcagtttgta tttgccgaca ggctcaaggt
    26041 tgtacatatt gtagaaagta gcgacttcgt aggcttgtgc aggtgagatg ccgatatagt
    26101 ctgcaacaaa ggcgatggtt tcgggggcga gccagccttt ttcggtttgt gcaatacgca
    26161 atgcgcccat aatggcagag cggcgttggt cggcaggata ttttgccaac tcaatatcaa
    26221 tttgttttaa ggattctgcg gataacatta tcggtcaacc tccccgaata cgatgtcctg
    26281 cgtaccgatg atggcaacga cgtcggcgag catgtggcct tttgccattt cgtccatgcc
    26341 ttgcaggtgg gcgaagccag gtgcgcggat tttcaggcgg tagggtttgt tcgcgccgtc
    26401 tgaaatgatg taaacgccga actcgccttt cggatgttcg acagcggtgt aagtctcgcc
    26461 ctcgggaacg tgcataccct cggtaaagag tttgaaatgg tgaatcaggt cttccatacc
    26521 tgttttcatt tcggtacgtt tgggcggggc gaatttgtgg ttggtggtaa tgaccggacc
    26581 gggattgacg cgcagccagt caacgcattg tttgatgatg cgtacggatt ggcgcatttc
    26641 ttccatgcgg cagaggtagc ggtcgtagca gtcgccgttc acaccgacgg gaatgtcgaa
    26701 atccattttg tcgtacactt cgtaaggctg tgtcttacgc acatcccatt ccacgccgga
    26761 accgcgcaac atcacgccgg taaagccttt ttgcatggca cgctcgggag tgacaacgcc
    26821 gatgccgacg gtacgctgtt tccaaatacg gttgtcggtc aggagggttt cgagtgtatc
    26881 gatgtttttt gggaagcgtt cgcagaaggc gtcgataaag tcgagcatag tgccttcacg
    26941 ggattcgttg agctgcttca atactttggc gttgcggaat ttgctgctct cgtatttggg
    27001 catgaagtcg ggcaggtcgc ggtaaacgcc gccgggacgg aagtaggctg catgcatacg
    27061 tgcgccggac acggcttcgt acaagtccat cagctcttcg cggtcgcgga aggcgtagag
    27121 gatggcggtc atcgcgccga tgtcgaatgc gtgcgaaccg atgcccatca ggtgattgag
    27181 gatgcgcgtt acttcggcga acatcacgcg aatatactgg gcgcggatag gtacatcgat
    27241 accggcaagt ttttctactg ccaaacaata cgcctgctca ttgaccatca tggaaacgta
    27301 gtccaagcga tccatatagg gcagggcttg cagataggtt ttggtttcag ccagtttttc
    27361 agtaccgcgg tgcaggaggc cgatatgagg gtcggcacgg acgatggttt cgccctccaa
    27421 ctccaaaatc atacgcaata cgccgtgcgc cgcagggtgt tgcgggccga agttgatggt
    27481 gtagtttctt aatttattgg ccaccgtagt tctcctcacg gacgatacgc ggcgtgatct
    27541 cgcgcggctc aatggtaaca ggttggtaaa tcacgcgttt ttgctcttcg tcgtaacgca
    27601 tttccacata gccggaaatc gggaagtctt tgcggaacgg atgtccgaca aagccgtaat
    27661 cggtcaggat gcggcgcaag tccgggtggt tgttgaacat gatgccgtac atatcgaagg
    27721 cttcgcgttc gtaccaatcc gcgctgttgt aaatatcgac tacggattca actacaggga
    27781 agtcgtcgtc tgaaacccag acgcgtacgc ggatgcgttg attgttttta acggaaagca
    27841 gctgactgac gacggcaaag cgtttgccct gccatgcttc gtttttgtaa gtgctgtaat
    27901 cgacaccgca caagtcaacc agaagctcga aatgcaactc ttcatggtcg cgcagcgcgg
    27961 tcatgattga aacatagtgt tcgggcagac actcgacggt aatctcgccc aaagctgaaa
    28021 tgactttgct tgcctgatcg ccaagcacgc cgatgacggt ctcgtataag ttttgaatgc
    28081 ttgccatatc ttcctcccct tactcgtcac gcgcgatggt ggaagtgcgc ttgatttttt
    28141 gttggagctg aatcaggccg taaatcaggg cttccgcagt cggcggacaa cccggcacat
    28201 aaacatctac cggcacgacg cggtcggcac cgcgcacaac ggaataagaa tagtgataat
    28261 agccgccgcc gttggcacat gagcccatag acaataccca gcgcggctcg gcgagctggt
    28321 cgtacactcg gcgcagggcg ggcgccattt tattggtgag cgtacccgcc acaatcatca
    28381 ggtcggcctg acggggggac ggacggaaaa taatgccgaa acggtcaagg tcgtaacgcg
    28441 ccatacccgc gtgcatcatt tccacggcgc agcaggccaa gccgaaagta accggccaca
    28501 acgaaccggt acgcatatag ttcaacaccg tatccgcgct ggtggtgatg aaaccttttt
    28561 tcaaaacgcc ttctattccc attccagcgc accttttttc cattcgtaaa caaagcctac
    28621 cgtcagaacg acgataaaca ccagcataga ccagaagccg tatgcgccca aatctttgaa
    28681 caccaccgcc cacggcagca taaacgcaac ctccaaatca aacaggatga agaggatggc
    28741 gacgaggtaa tagcgcacat caaacttcat ccttgcgttt tcaaaggctt caaaaccgca
    28801 ttcgtaaggc gcgtcttttt cggcgtagtg gcgtttcggg cctaaaatcg tgccgagcag
    28861 gataaacagc acgccggccg cgaggccgat gaggataaag acaaagacgg gaaagtaagc
    28921 ggacaacatg gttacaccca aatccgttaa caaaatttct acaataattt cgtattttag
    28981 cgaatttcaa aaaccattaa aaggtaaata tcggcaaaac gcccaaaaaa acccaataaa
    29041 tacaatcatg ttatgataac gattcttatt tgattttata aggtcatata aatttttaca
    29101 ccgtaattcg tg
//
LOCUS       DAXHPV010000005        28735 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.005, whole genome shotgun sequence.
ACCESSION   DAXHPV010000005 DAXHPV010000000
VERSION     DAXHPV010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 28735)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28735)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28735
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.005"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            23..1105
                     /gene="mraY"
                     /locus_tag="ACFM6C_000144"
     CDS             23..1105
                     /gene="mraY"
                     /locus_tag="ACFM6C_000144"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HFC6157666.1"
                     /translation="MFLWLAHFSNWLTGLNIFQYTTFRAVMAALTALAFSLMFGPWTI
                     RRLTALKCGQAVRTDGPQTHLVKNGTPTMGGSLILTAITVSTLLWGNWANPYIWILLG
                     VLLATGALGFYDDWRKVVYKDPNGVSAKFKMVWQSSVAIIAGLALFYLAANSANNILI
                     VPFFKQIALPLGVVGFLVLSYLTIVGTSNAVNLTDGLDGLATFPVVLVAAGLAIFAYV
                     SGHYQFSQYLQLPYVAGANEVAIFCTAMCGACLGFLWFNAYPAQVFMGDVGALALGAA
                     LGTVAVIVRQEFVLVIMGGLFVVEAVSVMLQVGWYKKTKKRIFLMAPIHHHYEQKGWK
                     ETQVVVRFWIITIVLVLIGLSTLKIR"
     gene            1220..1492
                     /locus_tag="ACFM6C_000145"
     CDS             1220..1492
                     /locus_tag="ACFM6C_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEL1-like repeat protein"
                     /protein_id="HFC6157667.1"
                     /translation="MKQTVKWLAAALIALGLNQAVWADDVSDFRENLQAAAQGLAQAQ
                     YSLGAMYYKGRGVRQDLVLAQEWLGKACQNGNQDGCDNDQRLKAGY"
     gene            1580..2917
                     /gene="murD"
                     /locus_tag="ACFM6C_000146"
     CDS             1580..2917
                     /gene="murD"
                     /locus_tag="ACFM6C_000146"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HFC6157668.1"
                     /translation="MTFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVS
                     QIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDIELLA
                     DIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREGKK
                     ADVWVLELSSFQLENTESLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIFRGDGVQV
                     LNADDVFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLIATQDIPLQGLHN
                     ATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIGEKNGVVFIDDSKGTNVGAT
                     AAAIAGLQNPLFVILGGMGKGQDFTPLRDALAGKAKGVFLIGVDAPQIRRDLDGCGLN
                     MTDCATLEEAVQTAYAQAEACDIVLLSPACASFDMFKGYAHRSEVFIEAFKAL"
     gene            3054..4367
                     /locus_tag="ACFM6C_000147"
     CDS             3054..4367
                     /locus_tag="ACFM6C_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004465726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HFC6157669.1"
                     /translation="MTGGFLKISEVLVKVGDGVHTLLLDRQIVRDGRKFDAPLLWMVV
                     LMTAFSLLMIYSASVYLASKEGGDQFFYLTRQAGFVVAGLIASGFLWFLCRMRTWRRL
                     VPWIFALSGLLLVVVLIAGREINGATRWIPLGPLNFQPTELFKLAVILYLASLFTRRE
                     EVLRSMESLGWQSIWRGTANLIMSATNPQARRETLEMYGRFRAIILPIMLVAFGLVLI
                     MVQPDFGSFVVITVIAVGMLFLAGLPWKYFFVLVGSVLGGMVLMITAAPYRVQRVVAF
                     LDPWKDPQGAGYQLTHSLMAIGRGEWFGMGLGASLSKRGFLPEAHTDFIFAIIAEEFG
                     FFGMCVLIFCYGWLVVRAFSIGKQSRDLGLTFNAYIASGIGIWIGIQSFFNIGVNIGA
                     LPTKGLTLPLMSYGGSSVFFMLISMMLLLRIDYENRRKMRGYRVE"
     gene            4371..5438
                     /gene="murG"
                     /locus_tag="ACFM6C_000148"
     CDS             4371..5438
                     /gene="murG"
                     /locus_tag="ACFM6C_000148"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HFC6157670.1"
                     /translation="MGGKTFMLMAGGTGGHIFPALAVADSLRARGHHVIWLGSKDSME
                     ERIVPQYGIRLETLAIKGVRGNGIKRKLMLPVTLYQTVREAQRIIRKHRVECVIGFGG
                     FVTFPGGLAAKLLGVPIVIHEQNAVAGLSNRHLSRWAKRVLYAFPKAFSHEGGLVGNP
                     VRADISNLPVPAERFQGREGRLKILVVGGSLGADVLNKTVPQALALLPDNARPQMYHQ
                     SGRGKLGSLQADYDALGVKAECVEFITDMVSAYRDADLVICRAGALTIAELTAAGLGA
                     LLVPYPHAVDDHQTANARFMVQAEAGLLLPQTQLTAEKLAEILGSLNREKCLKWAENA
                     RTLALPHSADDVAEAAIACAA"
     gene            5593..7002
                     /gene="murC"
                     /locus_tag="ACFM6C_000149"
     CDS             5593..7002
                     /gene="murC"
                     /locus_tag="ACFM6C_000149"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008763 - UDP-N-acetylmuramate-L-alanine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HFC6157671.1"
                     /translation="MMKNRVTNIHFVGIGGVGMSGIAEVLHNLGFKVSGSDQARNAAT
                     EHLGSLGIQVYPGHTAEHVNGADVVVTSTAVKKENPEVVAALEQQIPVIPRALMLAEL
                     MRFRDGIAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLGKGEYIVA
                     EADESDASFLHLTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCI
                     DSEHVRAILPKVSKPYATYGLDDTADIYATDIENIGAQMKFTVHVQMKGHGQEPFEVV
                     LNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTAL
                     LVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDALV
                     LTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNM
                     GAGSINRVPAALLELSKQI"
     gene            7115..8029
                     /locus_tag="ACFM6C_000150"
     CDS             7115..8029
                     /locus_tag="ACFM6C_000150"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003764621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HFC6157672.1"
                     /translation="MQNFGKVAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDP
                     KETPLSELKAQGFQTAFNILHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRC
                     KLIWQALGLPVPEFAVLHDDTDFDAVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKS
                     VYEELKHLQGEIIAERFIGGGEYSCPVLNGKGLPGIHIIPATEFYDYEAKYNRNDTIY
                     QCPSEDLTEAEESLMRELAVRGAQAIGAESCVRVDFLKDTDGKLYLLEINTLPGMTSH
                     SLVPKSAAVTGVGFADLCIEILKTAHVG"
     gene            8019..8747
                     /locus_tag="ACFM6C_000151"
     CDS             8019..8747
                     /locus_tag="ACFM6C_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HFC6157673.1"
                     /translation="MWDNAEAMERLTRWLLVMMAMLLAASGLVWFYNSNHLPVKQVSL
                     KGNLVYSDKKTLGSLAKEYIHGNILRTDINGAQEAYRRYPWIASVMVRRRFPDTVEVV
                     LTERKPVARWGDHALVDGEGNVFEARLDRPGMPVFRGAEGTSAEMLRRYDEFSTVLAK
                     QGLGIKEMTYTARSAWIVVLDNGITVRLGRENEMKRLRLFTEAWQHLLRKNKNRLSYV
                     DMRYKDGFSVRYASDGLPEKESEE"
     gene            8833..10077
                     /gene="ftsA"
                     /locus_tag="ACFM6C_000152"
     CDS             8833..10077
                     /gene="ftsA"
                     /locus_tag="ACFM6C_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HFC6157674.1"
                     /translation="MEQQQRYISVLDIGTSKVLALIGEVQDDDKINIVGLGQAPSRGL
                     RAGMVTNIDATVQAIRQAVNDAELMADTKITHVTTGIAGNHIRSLNSQGVVKIKDGEV
                     TQADIDRAIETAKAINIPPDQKILDAVVQDYIIDTQLGVREPIGMSGVRLDTRVHIIT
                     GASTAVQNVQKCIERCGLKSDQIMLQPLASGQAVLTEDEKDLGVCVIDIGGGTTDIAV
                     YMNGAIRHTSVIPAGGNLITKDLSKSLRTPLDAAEYIKIHYGVASCDTEGLGEMIEVP
                     GVGDRTSRQVSSKVLAAIISARIQEIFGVVLGELQKSGFPKEVLNAGIVLTGGVSMMT
                     GIVEFAEKIFDLPVRTGAPQEMGGLSDRVRTPRFSTAIGLLHAACKLEGNLPQPENGA
                     VQEREGGGGLLARLKRWIENSF"
     gene            10196..11374
                     /gene="ftsZ"
                     /locus_tag="ACFM6C_000153"
     CDS             10196..11374
                     /gene="ftsZ"
                     /locus_tag="ACFM6C_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HFC6157675.1"
                     /translation="MEFVYDVAESAVSPAVIKVIGLGGGGCNAINNMVANNVRGVEFI
                     SANTDAQSLAKNHAAKRIQLGTNLTRGLGAGANPDIGRAAAQEDREAIEEAIRGANML
                     FITTGMGGGTGTGSAPVVAEIAKSLGILTVAVVTRPFAYEGKRVHVAQAGLEQLKEHV
                     DSLIIIPNDKLMTALGEDVTMREAFRAADNVLRDAVAGISEVVTCPSEIINLDFADVK
                     TVMSNRGIAMMGSGYAQGIDRARMATDQAISSPLLDDVTLDGARGVLVNITTAPGCLK
                     MSELSEVMKIVNQSAHPDLECKFGAAEDETMSEDAIRITIIATGLKEKGAVDFVPARE
                     VEAVAPSKQEQSHNVEGMIRTNRGIRTMNLTAADFDNQSVLDDFEIPAILRRQHNSDK
                     "
     gene            11513..12823
                     /locus_tag="ACFM6C_000154"
     CDS             11513..12823
                     /locus_tag="ACFM6C_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HFC6157676.1"
                     /translation="MDTSKQTLLDGIFKLKANGTTVRTELMAGLTTFLTMCYIVIVNP
                     LILGETGMDMGAVFVATCIASAIGCFVMGFVGNYPIALAPGMGLNAYFTFAVVKGMGV
                     PWQVALGAVFISGLIFILFSFFKVREMLVNALPMGLKMSIAAGIGLFLALISLKGAGI
                     IVANPATLVGLGDIHQPSALLALFGFAMVVVLGHFRVQGAIIITILTITVIASLMGLN
                     EFHGIIGEVPSIAPTFMQMDFEGLFTVSMVSVIFVFFLVDLFDSTGTLVGISHRAGLL
                     VDGKLPRLKRALLADSTAIVAGAALGTSSTTPYVESAAGVSAGGRTGLTAVTVGVLML
                     ACLMFSPLAKSVPAFATAPALLYVGTQMLRSARDIDWDDMTEAAPAFLTIVFMPFTYS
                     IADGIAFGFISYAVVKLLCRRTKDVPPMVWIVAVLWALKFWYLG"
     gene            13448..14323
                     /gene="prpB"
                     /locus_tag="ACFM6C_000155"
     CDS             13448..14323
                     /gene="prpB"
                     /locus_tag="ACFM6C_000155"
                     /EC_number="4.1.3.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003779818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046421 - methylisocitrate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0019629 - propionate catabolic process,
                     2-methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylisocitrate lyase"
                     /protein_id="HFC6157677.1"
                     /translation="MSQHSAGARFRQAVKESNPLAVAGCVNAYFARLATQSGFKAIYL
                     SGGGVAACSCGIPDLGITTMEDVLIDARRITDNVDTPLLVDIDVGWGGAFNIARTIRN
                     FERAGVAAVHIEDQVAQKRCGHRPNKAIVSKDEMVDRIKAAVDARVDENFVIMARTDA
                     LAVEGLDAAIERAQACVEAGADMIFPEAMTDLNMYRQFADAVKVPVLANITEFGSTPL
                     YTQSELAENGVSLVLYPLSSFRAASKAALNVYEAIMRDGTQAAVVDSMQTRAELYEHL
                     NYHAFEQKLDKLFQK"
     gene            14409..15563
                     /gene="prpC"
                     /locus_tag="ACFM6C_000156"
     CDS             14409..15563
                     /gene="prpC"
                     /locus_tag="ACFM6C_000156"
                     /EC_number="2.3.3.16"
                     /EC_number="2.3.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050440 - 2-methylcitrate synthase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-methylcitrate synthase"
                     /protein_id="HFC6157678.1"
                     /translation="MTETTQTPTFKPKKSVALSGVAAGNTALCTVGRTGNDLSYRGYD
                     ILDLAQKCEFEEVAHLLIHGHLPNKFELAAYKTKLKSMRGLPIRVIKVLESLPAHTHP
                     MDVMRTGVSMLGCVHPERESHPESEARDIADKLIASLGSILLYWYQYSHNGKRIEVES
                     DEETIGGHFLQLLHGKRPSESHIKAMHVSLILYAEHEFNASTFTARVIAGTGSDMYSS
                     ITGAIGALKGPKHGGANEVAYDIQKRYRNADEAEADIRERIGRKEIVIGFGHPVYTIS
                     DPRNVVIKEVARGLSKETGDMRLFDIAERLESVMWEEKKMFPNLDWFSAVSYQKLGVP
                     TAMFTPLFVISRTTGWSAHVLEQRKDGKIIRPSANYTGPEDLAFVEIEER"
     gene            15889..16833
                     /gene="gntB"
                     /locus_tag="ACFM6C_000157"
     CDS             15889..16833
                     /gene="gntB"
                     /locus_tag="ACFM6C_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanitoxin biosynthesis L-arginine gamma (S)
                     hydroxylase"
                     /protein_id="HFC6157679.1"
                     /translation="MYHKKFDKEILLKIKELYRYDNWHAVLAILYDYLIIIFSIFLSE
                     QSYWFLPLTILLIGSRQRALATILHEASHSALTKNKKFGQILGTYFSGYLIFQSWNSY
                     CVSHVKNHHPKLGTDSDPDYKYYKDSGIFQTYSRIEFFWRFCVSQILCLKLFRNFKYL
                     IKNRLFSDITRTELFKLLLSQLILFVIGTYFVGYKFYVIYWLLPYLTAFQMITWFIEL
                     SEHYPMIQTAKNNLEASRNRFSHAIEHFFTGIHGENYHLIHHLFPAIPFWNLEKAHKI
                     LMKDFDYQEVNKDFGGIFFSKNNNAPMWKVLWSKYEAA"
     gene            16820..17731
                     /locus_tag="ACFM6C_000158"
     CDS             16820..17731
                     /locus_tag="ACFM6C_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003764988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HFC6157680.1"
                     /translation="MKLRDLLMGIFLAVSAALLNATIGIFSKILMEQGLSVQHIAFLK
                     TLTGFVFISILLCRTGFTRQIADISRKKEAILPLLLKVAICAFFGIYTLFFFETTAYQ
                     YGNAANVVVVLMASAAVSALILDSILLDERICISSVVGVGLAVLGIAMISWTGEGSLG
                     LILNAALAGSGYGCFSVLIKKFGLNGGIYLTRILMFFGSIFLFIPSLEGIEDIHWQWS
                     FIPPLLALSLLPTILGFYCTTKALDYLSAAKVQVTELAEPLFAAVLAWLFLNEIPEGR
                     FFVGAILIIAGIVSINGLYRPLLKRIE"
     gene            17822..20428
                     /gene="acnD"
                     /locus_tag="ACFM6C_000159"
     CDS             17822..20428
                     /gene="acnD"
                     /locus_tag="ACFM6C_000159"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047456 - 2-methylisocitrate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0019679 - propionate metabolic process,
                     methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe/S-dependent 2-methylisocitrate dehydratase
                     AcnD"
                     /protein_id="HFC6157681.1"
                     /translation="MAANQRYRKPLPGTDLEYYDARAACEDIKPGSYDKLPYTSRILA
                     ENLVNRADKVDLPTLQSWLGQLIEGKQEIDFPWYPARVVCHDILGQTALVDLAGLRDA
                     IAEKGGDPAKVNPVVQTQLIVDHSLAVECGGYDPDAFRKNRQIEDRRNEDRFHFINWT
                     KTAFENVDVIPAGNGIMHQINLEKMSPVVQVKNGVAFPDTCVGTDSHTPHVDALGVIS
                     VGVGGLEAETVMLGRASMMRLPDIVGVELNGKRQAGITATDIVLALTEFLRKERVVGA
                     FVEFFGEGARSLSIGDRATISNMTPEFGATAAMFAIDEQTIDYLKLTGRDDAQVKLVE
                     TYAKTAGLWADALKTAVYPRVLKFDLSSVTRNMAGPSNPHARFATADLASKGLAKPYE
                     EPSDGQMPDGAVIIAAITSCTNTSNPRNVVAAALLARNANCFGLKRKPWVKTSFAPGS
                     KVAEIYLKEAGLLPEMEKLGFGIVAFACTTCNGMSGALDPKIQKEIIDRDLYATAVLS
                     GNRNFDGRIHPYAKQAFLASPPLVVAYALAGSIRFDIENDVLGVADGREIRLKDIWPT
                     DEEIDAVVAEYVKPQQFRDVYVPMFDTGTAQKAPSPLYDWRPMSTYIRRPPYWEGALA
                     GERTLRGMRPLAILPDNITTDHLSPSNAILAVSAAGEYLAKMGLPEEDFNSYATHRGD
                     HLTAQRATFANPKLFNEMVKNEDGSVRQGSFARVEPEGETMRMWEAIETYMNRKQPLI
                     IIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLIGMGVLPLQFKPDTNRH
                     TLQLDGTETYDVVGERTPRCDLTLVIHRKNGETVEVPVTCRLDTAEEVLVYEAGGVLQ
                     RFAQDFLEGNAA"
     gene            20780..21949
                     /gene="prpF"
                     /locus_tag="ACFM6C_000160"
     CDS             20780..21949
                     /gene="prpF"
                     /locus_tag="ACFM6C_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004464330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0019629 - propionate catabolic process,
                     2-methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-methylaconitate cis-trans isomerase PrpF"
                     /protein_id="HFC6157682.1"
                     /translation="MPQIKIPAVYYRGGTSKGIFFKRTDLPAAAQKAGEARDKILLRV
                     LGSPDPYGKQIDGLGNASSSTSKAVILDKSERADHDVDYLFGQVSIDKPFVDWSGNCG
                     NLTAAVGAFAIEQGLVDKGKIPSDGICTVKIWQKNIGKTIIAHVPMQNGAVLETGDFE
                     LDGVTFPAAEVQIEFLDPADGEGSMFPTGNLVDEIDVPNIGRLKATLINAGIPTIFLN
                     AADLGYTGKELQDDINNDAAALEKFETIRAYGALKMGLISDVSEAATRAHTPKVAFVA
                     PAADYTASSGKTVKASDIDLLVRALSMGKLHHAMMGTASVAIATAAAVLGTLVNLAAG
                     GGARKDVRFGHPSGTLRVGAAAECQDGQWTATKAVMSRSARVMMEGWVRVPEDCF"
     gene            22363..23562
                     /locus_tag="ACFM6C_000161"
     CDS             22363..23562
                     /locus_tag="ACFM6C_000161"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HFC6157683.1"
                     /translation="MSDQLILVLNCGSSSLKGAVIDRKSGSVVLSCLGERLTTPEAVI
                     TFSKDGKKCQTALTGRNDHAGAVGMLLKELEKHGLHDRIKAIGHRIAHGGEKYSESVL
                     IDQAVMDELNACIPLAPLHNPANISGILAAQEHFPGLPNVGVMDTSFHQTMPERAYTY
                     AVPRELRKKYAFRRYGFHGTSMRYVAPEAARILGKPLEDIRMIIAHLGNGASITAIKN
                     GKSVDTSMGFTPIEGLVMGTRCGDIDPGVYSYLTSHAGMDVAQVDEMLNKKSGLLGIS
                     ELSNDCRTLEIAADEGHEGARLALEVMTYRLAKYIASMAVGCGGVDALVFTGGIGENS
                     RNIRAKTVSYLDFLGLHIDTKANMEKRYGNSGIISPTDSSPAVLVVPTNEELMIACDT
                     AELAGIL"
     gene            23670..24290
                     /locus_tag="ACFM6C_000162"
     CDS             23670..24290
                     /locus_tag="ACFM6C_000162"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003680049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HFC6157684.1"
                     /translation="MAQFFAVHPDNPQERLIKQAVEIVNKGGVVVYPTDSCYALGCKL
                     GDKAAMERILSIRKIDLKHHLTLMCADLSELGTYAKVDNVQFRQLKAATPGPYTFILQ
                     ATKDVPARTLHPKRKTIGLRIPDNAIAQALLGELGEPLLSCTLMLPEDGEPLTDPYEI
                     RERLEHAVDLVIDGGWCGTEPTTVVDMTDGTELVRQGCGDTAVFGL"
     gene            complement(24417..24860)
                     /locus_tag="ACFM6C_000163"
     CDS             complement(24417..24860)
                     /locus_tag="ACFM6C_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HFC6157685.1"
                     /translation="MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKV
                     VTALVKGGFLHSVRGKGGGLRLATPPDRINIGSVVRHLEPMQLVECMGENNECLITPS
                     CRLTGILGGAMKSFFTYLDGFTLQDLLNKPTYDLLYEPRIPIAVQ"
     gene            25034..25402
                     /locus_tag="ACFM6C_000164"
     CDS             25034..25402
                     /locus_tag="ACFM6C_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HFC6157686.1"
                     /translation="MKPLKRHPALIGLSRDHHHSLSLCVRLLRTPEERHRDELEPHFS
                     ELETHFREEETKFAPIWQNVALELKQRFEKDHARLRQMMASSEYGNAAWNTAFATTLR
                     DHARFEERELFPAAEPFLPA"
     gene            25447..26601
                     /locus_tag="ACFM6C_000165"
     CDS             25447..26601
                     /locus_tag="ACFM6C_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NnrS family protein"
                     /protein_id="HFC6157687.1"
                     /translation="MKFTKHPVWAMAFRPFYSLAALYGALSVLLWGFGYTGTHELSGF
                     YWHAHEMIWGYAGLVVIAFLLTAVATWTGQPPTRGGVLVGLTIFWLAARIVAFIPGWG
                     ASASGILGTLFFWYGAVCMALPVIRSQNQRNYVAVFALFVLGGTHAAFHVQLHNGNLG
                     GLLSGLQSGLVMVSGFIGLIGTRIISFFTSKRLNVPQIPSPKWVAQASLWLPMLTAML
                     MAHGVMPWLSAVFAFAAGVIFTVQVYRWWYKPVLKEPMLWILFAGYLFTGLGLIAVGA
                     SYFKPAFLNLGVHLIGVGGIGVLTLGMMARTALGHTGNPIYPPPKAVPVAFWLMMAAT
                     AVRMVAVFSSGTAYTHSIRTSSVLFALALLVYAWKYIPWLIRPRSDGRPG"
     gene            complement(26658..27530)
                     /locus_tag="ACFM6C_000166"
     CDS             complement(26658..27530)
                     /locus_tag="ACFM6C_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HFC6157688.1"
                     /translation="MPILNHIALIGVGLIGGSFVLDLKRQGLVRTVTGIDTDRDNLER
                     ALERGVIDRASVAIDADSIGGADLVLIATPVATVPAILTALRPVLPEHTWISDVGSTK
                     SSVIEAFRRCLPDRLHRCIAAHPIAGSDRSGAQAAQFGLFRHRKLIITPHGGEHSDGI
                     ALVENLWHAVGAEIYTMDAQRHDAVFAAVSHMPHLTAFAYVHQILDHPDGQEYLKFAA
                     TGFRDFTRIASGHPAVWADICLANKDSLLQLVQGLGKQLDVLANILTTDDREALYRYF
                     EEAKTTRDRWLDGN"
     gene            27615..28427
                     /locus_tag="ACFM6C_000167"
     CDS             27615..28427
                     /locus_tag="ACFM6C_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HFC6157689.1"
                     /translation="MDKIRVAAVQMVSGVSPETNVAAMKRLVARAAEQGADWVLLPEY
                     WVLMGANDTDKLALAEPLGGGRFQTALSETAKECGVVLFGGTVPLQSPEAGKVMNTLL
                     VYGRDGKRTGLYHKMHLFGFSGLGERYAEADTISAGREVPHLSAEGVSVAAGICYDVR
                     FPEFFRRQLPFDVLMLPAAFTHTTGKAHWELLLRARAVENQCYVVAAAQGGLHENGRR
                     TFGHSMIVDPWGDVLDVLPEGEGIVTADIDANRLNSVRNRLPALKYRVLDAV"
BASE COUNT         6671 a         7266 c         7915 g         6883 t
ORIGIN      
        1 caaaacaaaa aaaggaagcc ccatgttttt atggctcgca catttcagca actggttaac
       61 cggcctgaat atttttcaat acaccacatt ccgcgccgtc atggcggcgt tgaccgcctt
      121 ggcgttttcc ctgatgttcg gcccgtggac gatacgcagg ctgaccgcgc tcaaatgcgg
      181 gcaggcagtg cgtaccgacg gtccgcaaac ccacctcgtc aaaaacggca cgccgacgat
      241 gggcggttcg ctgattctga ccgccattac cgtgtccacc ctgttgtggg gcaactgggc
      301 gaacccgtat atctggattc tcttgggcgt actgcttgcc accggtgcgc tcggttttta
      361 cgacgactgg cgcaaagtcg tctataaaga ccccaacggc gtgtccgcca aattcaaaat
      421 ggtgtggcag tcaagcgttg ccattatcgc cggtttggca ttgttttacc ttgccgccaa
      481 ttccgccaac aatattttga ttgtcccgtt cttcaaacaa atcgccctgc cgctgggcgt
      541 ggtcggcttt ttggtgttgt cttacctgac catcgtcggc acatccaatg ccgtcaacct
      601 caccgacggc ttggacggcc ttgcgacctt ccccgtcgtc ctcgttgccg ccggcctcgc
      661 cattttcgcc tacgtcagcg gacactacca attttcccaa tacctccagc ttccctatgt
      721 cgccggcgcg aacgaagtcg ctatattctg caccgccatg tgcggcgcgt gcctcggatt
      781 tttgtggttc aacgcctatc ccgcgcaagt ctttatgggc gatgtcggcg cattggcatt
      841 gggtgccgcg ctcggtaccg tcgccgtcat cgtccgccaa gagtttgttt tagtgattat
      901 gggcggtctg ttcgtcgtag aagccgtatc cgttatgctt caggtcggtt ggtataagaa
      961 aaccaaaaaa cgcatcttcc tgatggcgcc catccatcac cactacgaac aaaaaggctg
     1021 gaaagaaacc caagtcgtcg tccgcttttg gattattacc atcgtcttgg tgttaatcgg
     1081 cttgagtacc ctcaaaatcc gctgaaccta tgccgtttga acatctttca gacggcattt
     1141 gaacgcgcaa taaacctgcg gcgacaatcc gcccagccct atcgttaacg gcggcttata
     1201 ctaaaacaga agtaaaacca tgaaacagac agtcaaatgg cttgccgccg ccctgattgc
     1261 cttgggcttg aaccaagcgg tgtgggcgga tgacgtatcg gattttcggg aaaacttgca
     1321 ggcggcagca caggggttag cccaagccca atacagtttg ggcgcaatgt attacaaagg
     1381 acgcggcgtg cgccaagacc ttgtgctcgc tcaagaatgg cttggcaagg cgtgtcaaaa
     1441 cggaaaccaa gacggctgcg acaatgacca acgcctgaag gcgggttatt aatcggctcg
     1501 cgatgccgtc tgaaagcggc ttgagcagga gcggacatcc ccccctgctc aatatgattt
     1561 gttttagggc aaaaccaaaa tgactttcca aaacaaaaaa atccttgtcg ccggacttgg
     1621 cggcacgggt atttccatga ttgcctacct gcgcaaaaac ggcgcggagg ttgctgcgta
     1681 tgatgcggag ctgaagccgg aacgcgtgtc gcaaatcggt aagatgtttg acgggttggt
     1741 gttttacacg ggccgtctga aagatgcgct ggacaacggt ttcgatattc tggctctcag
     1801 tcccggcatc agcgagcggc agccggatat tgaggcgttc aagcaaaacg gcggacgcgt
     1861 gttgggcgac atcgaattgc tggcggacat tgtgaaccgc cggggcgaca aggtaattgc
     1921 gattaccggc agcaacggca aaaccacggt aacgagcctg gtcggctatc tctgtatcaa
     1981 gtgcgggctg gataccgtta tcgcgggcaa tatcggcacg ccggttttgg aggcggaatg
     2041 gcagcgcgaa ggcaaaaagg cggacgtgtg ggtgttggag ctttccagct tccaattgga
     2101 aaacaccgaa agcctgcgcc cgacggcggc gacggtgctg aatatttccg aagaccatct
     2161 cgaccgctac gacgacttgc tcgactacgc gcataccaag gacaagattt tccgtggcga
     2221 tggcgtgcag gttttgaatg cggacgacgt gttctgccgc gccatgaagc gcgccgggcg
     2281 tgaagtgaaa tggttttcgt tggaacacga agccgatttt tggttggaac gcgagacagg
     2341 ccgcctgaaa caaggcaatg aagatttgat tgccacgcaa gatattccgt tgcaaggctt
     2401 gcacaacgct accaacgtga tggctgccgt tgccttgtgc gaagccgtcg gtttgccgcg
     2461 cgaagcattg ctcgaacacg tcaaaacctt tcaaggcctg ccgcaccgcg tggaaaaaat
     2521 cggcgagaaa aacggcgtgg tgttcatcga cgacagcaaa ggcacgaatg tcggcgcgac
     2581 cgccgccgcg attgccggtt tgcaaaatcc gctcttcgtg attttaggcg gcatgggcaa
     2641 agggcaggac ttcacgcctc tgcgcgacgc gcttgccggc aaggcaaaag gcgtgttcct
     2701 gatcggcgtt gatgcgccgc aaatccgccg cgatttggac ggctgcggtc tgaatatgac
     2761 cgactgcgcc actttggaag aagccgttca gacggcatat gcccaagccg aagcgtgcga
     2821 tatcgtgctg ctcagcccgg cttgtgcgag ttttgatatg tttaaaggct atgcgcaccg
     2881 ttcggaagtg tttatcgaag cgtttaaggc tttgtgatgc cgtctgaaat gcaaacgccg
     2941 tcattgttgg gcggcaagta aagatttaga ataccgattt gggatgtatc gtatgttcgg
     3001 acggcattgt ctgccgtctg aaatttttgc cctttgcggc aggtgcaaac agaatgacag
     3061 gtggtttttt gaagatttcg gaagtattgg taaaagtggg cgacggtgtc cacactctgc
     3121 tgctcgacag gcagattgtg cgcgacggca ggaaattcga cgcgccgctt ttgtggatgg
     3181 tggtgctgat gacggcgttc agcctgctga tgatttattc ggcttctgtg tatttggcat
     3241 caaaagaagg cggcgatcag tttttctatt tgaccagaca ggcggggttc gtcgttgccg
     3301 gcttgatagc gagcggtttt ttatggtttc tttgcaggat gaggacatgg cggcggcttg
     3361 tgccgtggat ttttgcctta tccggcctgt tgctggtagt cgtattgatt gccgggcgcg
     3421 aaatcaatgg cgcgacccgt tggatacctt tgggtccgtt gaatttccag ccgaccgagc
     3481 tgttcaagct ggcggtcatc ctttatttgg caagcctgtt cacgcgccgt gaagaagtgt
     3541 tgcgcagcat ggaaagtttg ggttggcagt cgatttggcg ggggacggcc aatctgatca
     3601 tgtccgccac caatccgcag gcacgtcgtg aaacattaga aatgtacggc cgtttccggg
     3661 cgatcatcct gccgattatg ctggtggcgt tcggtttggt gctgataatg gtacagccgg
     3721 atttcggttc gtttgtcgtc attaccgtca ttgccgttgg aatgctgttt ttggcaggat
     3781 tgccgtggaa atattttttc gtcctggtag gcagcgtctt gggcgggatg gtgctgatga
     3841 ttaccgccgc tccctaccgt gtgcagcggg tagtggcatt tttggacccg tggaaagacc
     3901 cgcagggtgc cggctaccag cttacccact ctctgatggc aatcgggcgc ggagagtggt
     3961 tcggtatggg tttgggtgcg agtttgagca aacgcggctt tctgccggaa gcgcataccg
     4021 attttatttt tgccatcatc gccgaagaat tcggtttctt cggtatgtgc gtgctgatat
     4081 tctgttacgg ctggctggtg gtgcgggcgt tttccatcgg caagcagtcg cgcgatttgg
     4141 gtttgacttt caacgcctat atcgcttcgg gtatcggcat ttggatcggt atccaaagtt
     4201 tcttcaatat cggtgtgaac atcggtgctt tgccgaccaa aggtctgacg ctgccgttga
     4261 tgtcctatgg cggttcgtca gtctttttca tgctgatcag catgatgctg ctgttgcgta
     4321 tagattatga aaaccgccgg aaaatgcgcg gttatcgggt ggagtaaatc atgggcggta
     4381 aaacctttat gctgatggcg ggcggaacgg gcggacatat tttccccgcg ctggcggtgg
     4441 cggattcgtt gcgcgcgcgc ggccatcatg tgatttggct gggcagcaag gattcgatgg
     4501 aagagcgtat cgtgccgcaa tacggcatac gcttggaaac gctggcgatt aaaggcgtgc
     4561 gcggcaacgg catcaaacgc aaactgatgc tgccggttac tttgtatcaa accgtccgcg
     4621 aagcgcagcg gattatccgc aaacaccgtg tcgagtgcgt catcggcttc ggcggcttcg
     4681 ttaccttccc cggcggtttg gcggcgaagc tattaggcgt gccgattgtg attcacgagc
     4741 aaaacgccgt ggcaggtttg tccaaccgcc acctgtcgcg ctgggcgaag cgggtgttgt
     4801 acgcttttcc gaaagcgttc agccacgaag gcggtttggt cggcaatccc gtccgcgccg
     4861 atattagcaa cctgcccgtg cctgccgaac gcttccaagg gcgtgaaggc cgtctgaaaa
     4921 ttttggtggt cggcggcagt ttgggcgcgg acgttttgaa caaaaccgta ccgcaggcat
     4981 tggctttgct gcccgacaat gcgcgtccgc agatgtacca ccaatcggga cggggcaagc
     5041 tgggcagctt gcaggcggat tacgacgcgc tgggcgtgaa agccgaatgt gtggaattta
     5101 ttaccgacat ggtgtccgcc taccgcgatg ccgatttggt gatttgccgt gccggcgcgc
     5161 tgacgattgc cgagttgacg gcggcgggat tgggtgcgtt gttagtgccg tatcctcacg
     5221 ccgttgatga ccatcaaacc gccaacgcgc gttttatggt gcaggcggag gcgggattgc
     5281 tgttgccgca aacccagttg acggcggaaa aactcgccga aatcctcggc agcctgaacc
     5341 gcgaaaaatg tctcaaatgg gcagaaaacg cccgtacttt ggcattgccg cacagcgcgg
     5401 acgacgttgc cgaagccgcg attgcgtgtg cggcgtaaac tgccgaacca tgccgtctga
     5461 aaagccgttc agacagcatg gatgtttttt atttcaatcc gctatatatt tgtcagaaaa
     5521 ctatggcgcg caaacggtca gccctttaaa ataacgcctt tatgcatcga aaatccaccg
     5581 gaacgcaaca ttatgatgaa aaatcgagtg accaacatcc attttgtcgg tatcggcggc
     5641 gtcggcatga gcggcatcgc cgaagtcttg cacaatttgg gctttaaagt ttccggttcg
     5701 gatcaggcgc gaaatgccgc taccgagcat ttgggcagct tgggcattca agtttatccc
     5761 ggccataccg cagaacacgt taacggtgcg gatgtcgtcg ttacctctac cgccgtcaaa
     5821 aaagaaaatc ccgaagttgt cgctgcgttg gagcagcaaa ttcccgttat tccgcgcgcc
     5881 ctgatgttgg cggagttgat gcgcttccgt gacggcatcg ccattgccgg cacgcacggc
     5941 aaaaccacga ccaccagcct gaccgcctcc atcctcggcg cggcaggact tgacccgact
     6001 ttcgttatcg gcggcaaact caacgccgca ggcaccaacg cccgcttggg caaaggcgaa
     6061 tacatcgttg ccgaagccga cgagtcggat gcatcctttc tgcacctgac accgattatg
     6121 tccgtcgtta ccaatatcga cgaagaccat atggatacct acgggcacag cgtcgaaaaa
     6181 ctgcatcagg cgtttatcga tttcatccac cgtatgccct tctacggcaa agcctttttg
     6241 tgtattgaca gcgaacacgt ccgcgcgatt ttgcccaaag tgagcaaacc ttatgctact
     6301 tacggtttgg acgataccgc cgacatctac gccaccgaca tcgaaaacat cggcgcgcaa
     6361 atgaaattta ccgttcatgt ccaaatgaaa ggacatgggc aagagccgtt tgaagttgtt
     6421 ttgaatatgc ccggcagaca caacgtcctc aatgccttgg cggctatcgg cgttgcgctg
     6481 gaagtcggcg catcggtgga agccatccaa aaagggctgc tcggctttga aggtgtcggc
     6541 cgccgcttcc aaaaatatgg cgacattaag ttgccaaacg gcgggaccgc gctcttggtg
     6601 gacgattacg gacaccaccc cgtcgaaatg gcggcgaccc ttgccgccgc acgcggcgcg
     6661 tatccggaaa aacgtttggt actcgccttc cagccgcacc gctatacccg cacgcgcgat
     6721 ttgtttgaag actttaccaa agtcctcaat accgttgacg cgctggtgct gaccgaagtt
     6781 tatgccgccg gtgaagagcc gattgccgcc gccgattccc gcgctcttgc ccgcgccatc
     6841 cgcgtgttgg gcaaactcga gccgatttac tgcgaaaacg ttgccgatct gcccgaaatg
     6901 ctgttgaacg ttttgcagga cggcgacatc gtgttgaata tgggtgcggg aagcatcaac
     6961 cgcgtccccg ccgcgctgct ggaattgtcg aaacagattt gaggcacacc cgcctgacag
     7021 acggaacatc atataaaggt cgtctgaaac cgcaaatcag gtttcagacg acctctggca
     7081 acaagcataa agcaatcagg aaagaacaaa aacaatgcag aattttggca aagtggccgt
     7141 attgatgggc ggtttttcca gcgaacgaga aatctcgctg gacagcggca ccgccatttt
     7201 gaatgcttta aaaagcaaag gcatagacgc atacgctttc gatcctaaag aaaccccatt
     7261 gtctgaattg aaggcacaag gttttcagac ggcattcaac atccttcacg gtacttacgg
     7321 cgaagacggg gcggttcagg gtgcattgga actgttgggc attccctata ccggcagcgg
     7381 tgtcgccgca tccgccatcg gcatggacaa ataccgctgc aaactgattt ggcaggcatt
     7441 gggactgccc gttcccgagt tcgccgtcct gcacgacgac actgatttcg atgccgtcga
     7501 agaaaaattg ggcctgccga tgtttgtgaa accggcggcc gaaggcagca gcgtaggcgt
     7561 ggtaaaagtc aaaggaaaag gccgtctgaa aagcgtttac gaagaattga aacaccttca
     7621 gggcgaaatc attgccgaac ggtttatcgg cggcggcgaa tattcctgcc ccgtcttgaa
     7681 cggcaaaggc ctgcccggca tacacatcat ccccgcgacc gagttttatg actacgaagc
     7741 caagtacaac cgcaacgaca ccatttatca atgtccttcg gaagatttga ccgaagccga
     7801 agaaagcctg atgcgcgaac tggcggttcg cggcgcgcag gcaatcggtg cggaaagctg
     7861 cgtgcgcgtc gatttcctca aagataccga cggcaaactc tatctgttgg aaatcaacac
     7921 cctgcccggt atgacgagcc atagtttagt accgaaatcc gctgccgtta cgggcgtggg
     7981 ttttgccgat ttatgtattg aaattttgaa gaccgcacat gtgggataat gccgaagcga
     8041 tggaacggct gacgcgctgg ctgcttgtca tgatggcgat gctgcttgct gcgtccgggc
     8101 tggtttggtt ttacaattcg aatcatctgc ccgtcaagca ggtgtcgctg aagggcaacc
     8161 tggtttattc cgataagaag acattgggca gtttggcgaa agaatacatc catgggaata
     8221 ttttgaggac ggacatcaat ggcgcacagg aggcctaccg ccggtatccg tggattgcgt
     8281 cggtcatggt gcgccgccgt tttcccgaca cggttgaggt cgtcctgacc gagcgcaagc
     8341 cggtcgcgcg ttggggcgac catgccttgg tggacggcga aggcaatgtt tttgaagccc
     8401 gcttggacag acccggaatg ccggtattca gaggcgcgga aggaacgtct gccgaaatgc
     8461 tccgccgtta tgacgaattt tcgactgttt tggcaaaaca gggtttgggc atcaaagaga
     8521 tgacctatac ggcacgttcg gcgtggattg tcgttttgga caacggcatc accgtcaggc
     8581 tcggacggga aaacgagatg aaacgcctcc ggctttttac cgaagcgtgg cagcatctgt
     8641 tgcgtaaaaa taaaaatcgg ttatcctatg tggatatgag gtataaggac ggattttcag
     8701 tccgctatgc ttccgacggt ttacccgaaa aagaatccga agaatagtgg gaacaggtat
     8761 cggacagatt acggccgtgc cgtctgaaat ggtgcgacgc aaatttcaat cagttttaag
     8821 agcagacgaa caatggaaca gcagcaaaga tacatcagcg tactggatat cggtacgtct
     8881 aaagtcctcg cactgatcgg ggaagttcaa gatgacgaca aaatcaacat cgtcggtttg
     8941 gggcaggctc cttcacgggg cttgcgcgcg ggcatggtaa ccaatatcga tgccaccgtc
     9001 caagccatca ggcaggcggt caatgatgcc gagctgatgg cggataccaa aattacccac
     9061 gttaccacag gtatcgcagg caaccacatc cgcagtctca attcgcaagg tgtggttaaa
     9121 attaaagacg gggaagtcac gcaggcagac atcgaccgcg ccattgaaac ggcaaaggca
     9181 atcaatatcc cgcccgatca aaaaattctc gatgccgtgg ttcaagacta cattatcgac
     9241 acccaacttg gcgtgaggga gcccatcggt atgagcggtg tgcgtctgga tacgcgggtg
     9301 cacatcatta ccggtgcaag tacggcagtg cagaatgtcc aaaaatgtat cgagcggtgc
     9361 ggcttgaaaa gcgatcaaat catgcttcag ccgttggcaa gcgggcaggc ggtgctgact
     9421 gaagatgaaa aagacctcgg cgtatgcgtc atcgacattg gtggcggaac gaccgatatt
     9481 gccgtttata tgaacggtgc catccgccat acgtccgtca ttccggccgg tggtaatctg
     9541 attaccaaag atttgtccaa atcgttgaga acacctctcg atgccgccga gtacattaaa
     9601 atccattatg gcgtggcatc atgcgatacg gaaggcttgg gtgagatgat tgaagttccg
     9661 ggcgtgggtg accggacatc gcgtcaggtt tccagtaagg ttctggcagc aatcatcagt
     9721 gcacggattc aggagatttt tggcgtagtg ctgggcgagc tgcaaaaatc gggtttcccc
     9781 aaagaagtgc tgaatgcggg tatcgttctg accggcggtg tgtccatgat gaccgggatt
     9841 gtggaatttg ccgaaaaaat cttcgatttg cctgtacgca ccggtgcacc ccaagaaatg
     9901 ggcggtttgt ccgaccgcgt ccgcacaccg cgtttttcta ccgctatcgg gctgcttcat
     9961 gcagcatgca agctggaagg aaacttgccg cagccggaaa acggtgcagt gcaagagagg
    10021 gaagggggcg gcggtttgtt ggcaagattg aaacggtgga ttgaaaacag cttctgaaca
    10081 ggtggattgc cgtttgacag gtgagaagta ttttgccagc agcaagatac ttcttatata
    10141 atgaataata atttatttaa accgtcctct gaatggggcg agcaggagtt tttgaatgga
    10201 atttgtttac gacgtggcag aatcggcagt cagccctgcg gtgattaaag taatcggctt
    10261 gggcggcggc ggttgcaatg caatcaataa catggttgcc aacaatgtgc gcggtgtgga
    10321 gtttatcagt gccaatacgg atgcgcagtc tctggcaaaa aaccatgcgg cgaagagaat
    10381 ccagttgggt acgaatctga cacgcggttt gggcgcgggc gcgaatcccg atatcggccg
    10441 tgcggcagcc caggaagacc gggaagccat tgaagaagcc attcgcggtg cgaatatgct
    10501 gtttatcacg accggtatgg gcggcggtac cggtaccggt tccgcgccgg ttgttgctga
    10561 gattgccaag tctttgggca ttctgaccgt tgccgtggtt acccgaccgt tcgcatatga
    10621 aggtaagcgc gtccatgtcg cacaggcagg gttggaacag ttgaaagaac acgtcgattc
    10681 gctgatcatc atcccgaacg acaaactgat gactgcattg ggtgaagacg taacgatgcg
    10741 cgaagccttc cgtgccgccg acaatgtatt gcgcgatgcg gtcgcaggca tttccgaagt
    10801 ggtaacttgc ccgagcgaaa tcatcaacct cgactttgcc gacgtgaaaa ccgtgatgag
    10861 caaccgcggt atcgctatga tgggttcggg ttatgcccaa ggtatcgacc gtgcgcgtat
    10921 ggcgaccgac caggccattt ccagtccgct gctggacgat gtaaccttgg acggagcgcg
    10981 cggtgtgctg gtcaatatta cgactgctcc gggttgcttg aaaatgtccg agttgtccga
    11041 agtcatgaaa atcgtcaacc aaagcgcgca tcccgatttg gaatgcaaat tcggtgcggc
    11101 tgaagacgag accatgagcg aagatgccat ccggattacc attatcgcta ccggtctgaa
    11161 agaaaaaggc gcggtcgatt ttgttccggc aagggaggta gaagcggttg ccccgtccaa
    11221 acaggagcaa agccacaatg tcgaaggtat gatccgcacc aatcgcggta tccgcacgat
    11281 gaaccttacc gctgcggatt tcgacaatca gtccgtactt gacgactttg aaatccctgc
    11341 gattttgcgt cgtcaacaca attcagacaa ataatgtgct gtttgcccgt aaacctgctg
    11401 cctcccgaat cggtttgtcc ggtttgggag gtatgttttt caagatgttg caatttcgta
    11461 cggtttgcgg tcggcggatt cagatttttc cacttgatac agactttcag atatggacac
    11521 ttcaaaacaa acactgttgg acgggatttt taagctgaag gcaaacggta cgacggtgcg
    11581 taccgagttg atggcgggtt tgacaacttt tttgacgatg tgctacatcg ttatcgtcaa
    11641 ccctctgatt ttgggcgaga ccggcatgga tatgggggcg gtattcgtcg ctacctgtat
    11701 cgcgtctgcc atcggctgtt ttgttatggg ttttgtcggc aactatccga ttgcactcgc
    11761 accggggatg gggctgaatg cctatttcac ctttgccgtc gttaagggta tgggcgtgcc
    11821 ttggcaggtt gcgttgggtg cggtgttcat ctccggtctg attttcatcc tgttcagctt
    11881 ttttaaagtc agggaaatgc tggtcaacgc actgcctatg ggtttgaaaa tgtcgattgc
    11941 tgccggtatc ggtttgtttt tggcactgat ttccctgaaa ggcgcaggca ttatcgttgc
    12001 caatccggca accttggtcg gtttgggcga tattcatcag ccgtccgcgt tgttggcact
    12061 gttcggtttt gctatggtgg tcgtattggg acatttccgc gttcaaggcg caatcatcat
    12121 caccatcttg accattaccg tcattgccag cctgatgggt ttgaatgaat ttcacggcat
    12181 catcggcgaa gtaccgagca ttgcgccgac ttttatgcag atggattttg aaggcctgtt
    12241 taccgtcagc atggtcagtg tgattttcgt cttcttcttg gtcgatctat ttgacagtac
    12301 cggaacgctg gtcggcatat cccaccgtgc cgggctgctg gtggacggta agctgccccg
    12361 cctgaaacgc gcactgcttg cagactctac cgccattgtg gcaggtgcgg ctttgggtac
    12421 ttcttccacc acgccttatg tggaaagcgc ggcgggcgta tcggcaggcg gacggaccgg
    12481 cctgacggcg gttaccgtcg gcgtattgat gctggcgtgt ctgatgttct ccccattggc
    12541 gaaaagtgtt cccgcttttg ccaccgcgcc cgccctgctt tatgtcggca cgcagatgct
    12601 ccgcagtgcg agggatattg attgggacga tatgacggaa gccgcacccg cattcctgac
    12661 cattgtcttc atgccgttta cctattcgat tgcagacggc atcgccttcg gcttcatcag
    12721 ctatgccgtg gttaaacttt tatgccgccg caccaaagac gttccgccta tggtatggat
    12781 tgttgccgta ttgtgggcac tgaaattctg gtatttgggc tgattgattc gatattaaaa
    12841 atgccgtctg aaaggttttc agacggcatt ttgtttgccg atatatttaa tttttattaa
    12901 attatataaa aatcaaatac ataataaaat acatcggatt gcttaaaaat aatacattgt
    12961 ttttatgtat aaaatatttt ataagttttc aggattttga ttatcgaaaa tttttcttga
    13021 tttcctgaca attttattga aacaaataat tcaaaattaa tctagtttaa tcatagaatt
    13081 aaaataaaat attaaaatta tgtaatgagt ctccttaaaa atgtttgaca ttttcagtct
    13141 tgtgttttag attagcgaaa aataaaacta cacaatacta caaaggaaca ttactatgaa
    13201 accaattcag atgttttccc cttttctgaa taatcccctt gttttcttct tgtctgcggt
    13261 tttgccgcat aattccgaac ggtctgctgt ttttctttga ttcgttttaa atatcaataa
    13321 gataattttt cccatatatt tttaatgatt ggattgggat gcccgatgcg tcggatggat
    13381 gtgttttgcc gtccgaatgt gatggaagcc tgtccatact gaaaaaagtc tataaaggag
    13441 aaatatgatg agtcaacact ctgccggagc acgtttccgc caagccgtga aagaatcgaa
    13501 tccgcttgcc gtcgccggtt gcgtcaatgc ttattttgca cgattggcca cccaaagcgg
    13561 tttcaaagcc atctatctgt ccggcggcgg cgtggcagcc tgttcttgcg gtatccctga
    13621 tttgggcatt accacaatgg aagatgtgct gatcgacgca cgacgcatta cggacaacgt
    13681 ggatacgcct ctgctggtgg acatcgatgt gggttggggc ggtgcattca atattgcccg
    13741 taccattcgc aactttgaac gcgccggtgt tgcagcggtt cacatcgaag atcaggtagc
    13801 gcaaaaacgc tgcggccacc gtccgaacaa agccattgta tctaaagatg aaatggtcga
    13861 ccgtatcaaa gctgccgtag atgcgcgcgt tgatgagaac ttcgtgatta tggcgcgtac
    13921 cgatgcgctg gcggtagaag gtttggatgc cgctatcgaa cgcgcccaag cttgtgtcga
    13981 agccggtgcg gacatgattt tccctgaagc catgaccgat ttgaacatgt accgccaatt
    14041 tgcagatgcg gtgaaagtgc ccgtgttggc gaacattacc gagtttggtt ccactccgct
    14101 ttatacccaa agcgagctgg ctgaaaacgg cgtgtcgctg gtgctgtatc cgctgtcatc
    14161 gttccgtgca gcaagcaaag ccgctctgaa tgtttacgaa gcgattatgc gcgatggcac
    14221 tcaggcggcg gtggtggaca gtatgcaaac ccgtgccgag ctgtacgagc atctgaacta
    14281 tcatgccttc gagcaaaaac tggataaatt gtttcaaaaa tgatttaccg ctttcagacg
    14341 gtctttcaac aaatccgcat cggtcgtctg aaaacccgaa acccataaaa acacaaagga
    14401 gaaataccat gactgaaact actcaaaccc cgactttcaa acctaaaaaa tccgttgcgc
    14461 tttcaggcgt tgcggccggt aataccgctt tgtgtaccgt tggccgtacc ggcaacgatt
    14521 tgagctatcg cggttacgac atcttggatt tggcacaaaa atgcgagttt gaagaagtcg
    14581 cccacctgct gattcacggt catctgccca acaaattcga gctggccgct tataaaacca
    14641 agctcaaatc catgcgcggc ctgcctatcc gtgtgattaa agttttggaa agcctgcctg
    14701 cacataccca tccgatggac gtaatgcgta ccggcgtatc catgctgggc tgcgttcatc
    14761 ctgaacgtga aagccatccg gaaagtgaag cgcgcgacat cgccgacaaa ctgatcgcca
    14821 gcctcggcag catcctcttg tactggtatc aatattcgca caacggcaaa cgcattgagg
    14881 ttgaaagcga cgaagagacc atcggcggtc atttcctgca actgttgcac ggcaaacgcc
    14941 caagcgaatc acacatcaaa gccatgcacg tttcactgat tctgtatgcc gaacacgagt
    15001 tcaacgcttc tacctttacc gcccgcgtga tcgccggtac aggctctgat atgtactcca
    15061 gcattaccgg agcaatcggc gcgttgaaag gtccgaaaca cggcggcgcg aacgaagtgg
    15121 cttacgatat tcaaaaacgc taccgcaatg ccgacgaagc tgaagccgac atccgcgaac
    15181 gcatcggccg caaagaaatc gtgatcggtt tcggtcatcc ggtgtacacc atttccgacc
    15241 ctcgcaacgt tgtcattaaa gaagtggcac gcggtttgag caaagaaacc ggcgatatgc
    15301 gcctctttga cattgccgaa cgtttggaaa gcgtgatgtg ggaagagaaa aaaatgttcc
    15361 cgaatctgga ctggttctct gccgtttcct accaaaaatt gggcgtaccg accgctatgt
    15421 tcacaccgct gttcgtaatt tcccgtacaa ccggttggag cgcacacgtt cttgagcaac
    15481 gcaaagacgg caaaatcatc cgtccgagcg caaactacac aggccctgaa gatttggcgt
    15541 ttgtggagat tgaagaacgc tgagacggaa cacaaccgta ggagaccacc aatcggattt
    15601 cagacgacgt gtagcgcggg ctttgcctgc ggaaaactga aacccgccta cggttccgct
    15661 tttcagacgg cctgttgaaa gatgcgagag agaaggttgt ctgaaaaacc agccgcaacg
    15721 tctgccgtca ttcccacccc cgcctaagcg aggacaggtc gcggcgggaa tggcggaggc
    15781 agcgcggcaa cttttttcac ggttctgcca aaatatgcta tgaaagaatg ttcgtcagca
    15841 taatggagat gaagccgata ttataactaa tacggagaat tgtgggatat gtaccataag
    15901 aaatttgata aagaaattct tttaaaaatt aaagaattat atagatacga taattggcat
    15961 gctgtacttg ctatattata tgattattta ataataattt tttctatatt tttatctgag
    16021 cagtcatatt ggtttctccc tttaacgatt ttattaatag gaagcaggca aagggcgttg
    16081 gcaacaattt tacatgaagc ctctcattct gccttaacta aaaataagaa gtttggacaa
    16141 attttaggta catatttttc tggatattta atttttcaaa gttggaatag ttattgtgtt
    16201 tctcatgtga agaatcatca tccaaagtta gggactgatt cggatcctga ttataagtat
    16261 tataaagact caggtatttt tcagacatat tcaagaattg aatttttctg gagattttgt
    16321 gtctctcaaa ttttatgttt gaaattattt aggaatttta aatatttaat taaaaataga
    16381 ttattttcgg atattacaag aacagagttg tttaagctac ttctttctca attaattcta
    16441 tttgttatcg gtacatattt tgtagggtat aaattttatg taatttattg gttattacca
    16501 tatttaactg cattccagat gataacttgg tttattgagt tgtccgagca ttatccaatg
    16561 atacaaactg ccaaaaataa tttagaagcg tcaagaaata ggtttagtca tgcaatagag
    16621 cattttttca cggggataca tggagaaaat tatcatctaa tacatcattt atttccagcc
    16681 attccatttt ggaatttgga aaaagcacat aagatattaa tgaaagattt tgattatcaa
    16741 gaggtaaata aagattttgg agggattttc ttttcgaaaa acaataatgc acctatgtgg
    16801 aaagtattat ggagtaaata tgaagctgcg tgatttactg atgggaatat tcttggcagt
    16861 ttctgcggcc cttctgaatg caaccatcgg catattcagc aagatattga tggagcaggg
    16921 cttgtctgtt cagcatattg catttttgaa aactttgaca ggtttcgtgt ttatcagcat
    16981 tttgctttgc cgtaccggtt ttaccagaca gattgcggat atttcaagaa agaaagaggc
    17041 aattttgccg ttgctgttaa aagtagcaat ttgtgctttt ttcggaattt atacgttgtt
    17101 tttctttgaa accacagctt atcaatatgg caatgctgcg aatgtagtag ttgtattaat
    17161 ggcatcggct gcagtatctg ccttgatatt ggacagcata ctgttagatg aacgtatttg
    17221 catttcttca gtcgtcggtg tgggtttggc agtattgggg atcgcaatga tttcttggac
    17281 tggagaagga agtttagggt tgattctgaa tgccgcactg gcgggctcgg gctacggttg
    17341 tttttccgtt ttgattaaga aattcggcct aaacggcggt atttatttga cacggatatt
    17401 gatgtttttt ggaagtattt ttttgtttat cccttcattg gaaggtattg aggatataca
    17461 ttggcaatgg tcttttattc cgccactctt ggcattgtct ttattgccga cgattttagg
    17521 attttattgt acaactaaag cattggatta tttgagtgct gcgaaggtac aggtaactga
    17581 attggccgag ccattgtttg ctgccgtact ggcttggttg tttttgaatg aaataccgga
    17641 aggacgcttc tttgtcggcg ccattctgat tattgccggt attgtgtcta tcaatgggct
    17701 gtatcgacca ttgttgaagc gaattgaata atttttattt cccaagattt cagacgacct
    17761 cttcaacaaa cgtcgtctga aaccccaaaa ccaaaaaaat aatagattta ggagaaccga
    17821 catggctgcc aaccaacgtt accgcaaacc gctgcccggt acggatttgg aatactacga
    17881 cgcgcgtgcg gcgtgtgagg acatcaagcc cggctcttac gacaagctgc cttacacgag
    17941 ccgcattttg gcggagaatt tggtcaaccg cgcggacaaa gtcgatttgc cgacgctgca
    18001 aagctggctg ggtcagctga ttgagggaaa acaggaaatc gactttcctt ggtatccggc
    18061 gcgggtggtg tgccacgata ttctggggca gaccgcgttg gtggatttgg caggtctgcg
    18121 cgatgcgatt gccgaaaaag gcggcgatcc tgccaaagtg aatccggtgg tgcaaaccca
    18181 gctcatcgtc gaccactctc tggccgttga atgcggcggc tacgaccccg atgccttccg
    18241 caaaaaccgc caaatcgaag acagacgtaa cgaagaccgt ttccacttca tcaactggac
    18301 aaaaaccgca tttgaaaatg tggacgtgat tccggcgggc aacggcatca tgcaccaaat
    18361 caatctagaa aaaatgtcgc ccgtcgtcca agtcaaaaac ggcgtggcgt tccccgatac
    18421 ctgcgtcggc acggattcgc acacgccgca cgtcgatgcg ctgggcgtga tttccgtggg
    18481 cgtgggcgga ttggaagcgg aaaccgtgat gctgggtcgc gcgtccatga tgcgcctgcc
    18541 cgatattgtc ggcgttgagc tgaacggcaa acggcaggcg ggcattacgg cgacggatat
    18601 tgtgttggca ctgaccgagt ttctgcgcaa agaacgcgtg gtcggggcgt ttgtcgaatt
    18661 cttcggcgag ggcgcgagaa gcctgtctat cggcgaccgc gcgaccattt ccaacatgac
    18721 gccggagttc ggcgcgactg ccgcgatgtt cgctattgat gagcaaacca ttgattattt
    18781 gaaactgacc ggacgcgacg acgcgcaggt gaaattggtg gaaacctacg ccaaaaccgc
    18841 aggcttatgg gcagatgcct tgaaaaccgc cgtttatccg cgcgttttga aatttgattt
    18901 gagcagcgta acgcgcaata tggcaggccc gagcaacccg cacgcgcgtt ttgcgaccgc
    18961 cgatttggcc agcaaaggct tggctaaacc ttacgaagag ccttcagacg gccaaatgcc
    19021 cgacggcgcg gtcatcatcg ccgcgattac cagttgcacc aacacttcca acccgcgcaa
    19081 cgttgttgcc gccgcgctct tggcgcgcaa cgccaactgc ttcgggctga aacgcaaacc
    19141 gtgggtcaaa acctcgtttg cccccggttc gaaagtggcg gaaatttatt tgaaagaagc
    19201 aggcctgctg cccgaaatgg aaaaactcgg cttcggtatc gtcgccttcg cctgcaccac
    19261 ctgcaacggc atgagtggcg cgctggatcc gaaaatccag aaagaaatca tcgaccgcga
    19321 tttgtacgcc accgccgtac tgtcaggcaa ccgcaacttc gacggccgta ttcatccgta
    19381 tgcgaaacag gctttcctcg cttcgccccc gttggtcgtt gcttacgcgc tggcaggcag
    19441 catccgtttc gatattgaaa acgatgtact cggcgttgca gacggccgcg aaatccgcct
    19501 gaaagacatc tggccgaccg acgaagaaat cgatgccgtc gttgctgaat atgtgaaacc
    19561 gcagcagttc cgcgatgtgt atgtaccgat gttcgacacc ggcacagcgc aaaaagcacc
    19621 tagtccgctg tacgattggc gtccgatgtc cacctacatc cgccgtccgc cttactggga
    19681 aggcgcgctg gcaggggaac gcacattaag aggtatgcgt ccgctggcga ttttgcccga
    19741 caacatcacc accgaccacc tctcgccgtc caatgcgatt ttggccgtca gtgccgcagg
    19801 cgagtatttg gcgaaaatgg gtttgcctga agaagacttc aactcttacg caacccaccg
    19861 cggcgaccac ttgaccgccc aacgcgctac tttcgccaat ccgaaactgt ttaacgaaat
    19921 ggtgaaaaac gaagacggca gcgtgcgcca aggctcgttc gcccgcgtcg aacccgaagg
    19981 cgaaaccatg cgcatgtggg aagccatcga aacctatatg aaccgcaaac agccgctcat
    20041 catcattgcc ggtgcggact atggtcaagg ctcaagccgc gactgggctg caaaaggcgt
    20101 acgcctcgcc ggcgtagaag cgattgttgc cgaaggcttc gagcgtatcc accgcaccaa
    20161 ccttatcggc atgggcgtgt tgccgctgca gttcaaaccc gacaccaacc gccataccct
    20221 gcaactggac ggtacggaaa cctacgacgt ggtcggcgaa cgcacaccgc gctgcgacct
    20281 gaccctcgtg attcaccgta aaaacggcga aaccgtcgaa gttcccgtta cctgccgcct
    20341 cgatactgca gaagaagtat tggtatatga agccggcggc gtgttgcaac ggtttgcaca
    20401 ggattttttg gaagggaacg cggcttagag gtcgtctgaa aagcaagacg tagcgtgggt
    20461 cgggttcaac attttgctca ttcacgtaat tctcgatatg gcaggcatct actgtaaatc
    20521 gtcattcccg cgcaggcggg aatccagaaa gtggaattga ggaaaccttt ttatccgatg
    20581 agtttctgtg cggataaatc tagattcccg cctgcgcggg aatgacgggg tttaataatc
    20641 tgccgtatca caacacagta gccgtagatt ggggcgaacc ccgacagttt gcggaatcaa
    20701 acggctttgg tcggagtggc agcctaatcc actataaaaa tcgtgggcag agcccacgct
    20761 acataaggag aatctagaaa tgccgcaaat taaaattcca gccgtttact accgcggcgg
    20821 tacatctaaa ggcattttct tcaaacgtac cgatctgccg gccgctgctc agaaagcagg
    20881 cgaggcacgc gacaaaatcc tgttgcgcgt actcggcagc ccggaccctt acggcaaaca
    20941 gattgacggt ttgggcaatg ccagttcgtc caccagcaaa gccgtgattt tggacaaatc
    21001 cgaacgcgcc gatcacgatg tcgattattt gttcggacaa gtttccatcg acaaaccttt
    21061 tgtcgattgg agcggcaact gcggcaacct caccgccgcc gtgggcgcat ttgccatcga
    21121 gcaaggcttg gtcgataaag gcaagattcc ttcagacggc atctgcacag tcaaaatctg
    21181 gcagaaaaac atcggcaaaa ccattattgc ccatgtaccg atgcaaaacg gtgcagtttt
    21241 ggaaacaggc gattttgagc ttgacggcgt aacgttccct gccgctgaag tacaaatcga
    21301 atttttagat ccggccgacg gcgaaggcag tatgtttcca accggcaatt tggtcgatga
    21361 aattgatgtg ccgaatatag gccgtctgaa agccacgctt atcaatgccg gtattccaac
    21421 cattttcttg aatgccgcag atttgggcta cacaggcaaa gagttgcaag acgacatcaa
    21481 caatgatgcc gcggctcttg aaaaatttga aaccatccgc gcgtatggcg cgctgaaaat
    21541 gggcttgatc agcgatgtat ccgaagccgc cacccgcgcc catactccaa aagttgcttt
    21601 tgtcgcccct gcagccgatt acaccgcttc aagcggcaaa accgtcaaag cttccgacat
    21661 cgacttattg gtacgcgcac tgagcatggg caaattgcac cacgccatga tgggtactgc
    21721 ttcagtcgcc attgctaccg ccgccgccgt gctcggaacg ctggtcaacc ttgcagccgg
    21781 aggcggagcg cgtaaagacg tccgcttcgg ccatccatca ggtacactgc gcgtcggtgc
    21841 agccgccgaa tgtcaggacg gacaatggac ggccaccaaa gcggttatga gccgcagcgc
    21901 acgcgtgatg atggaaggtt gggtcagggt gccggaagat tgtttttaaa ttgacgtagc
    21961 atgggtttgc ccgcgagcca taaacaggtc gtctgaaaaa caagtaaaca tcaaatcact
    22021 gactattcct ttcccttgcc ctgtggcgga aggcggcaaa tcacaaggaa gaacacggaa
    22081 accccgataa aagacagctt cccgtattac cgtcattccc gcgcaggcgg gaatctagac
    22141 ctgtcaatat ggaggattgg taggggaaaa caggtttcgt gagttctaca ttctggattc
    22201 ccgccacagc ctgtcctcgc gtaggcgggg acggaataac gatagaaaat gcggcatacg
    22261 ctttgcccaa agaggccgtc tgaaacacct tgcgcctgat gtctgccttt ttcagacgac
    22321 cccacaccaa aaaaacaacc acaaactaca aggagaaaca tcatgtccga ccaactcatc
    22381 ctcgttctga actgcggcag ttcatcgctc aaaggtgccg ttatcgaccg caaaagcggc
    22441 agcgtcgtcc taagctgcct cggcgaacgc ctgaccacgc ccgaagcagt cattacgttc
    22501 agcaaagacg gcaaaaaatg ccaaacagct ttgaccggcc gtaacgatca tgccggtgca
    22561 gtaggtatgc tgttgaaaga gctcgaaaaa cacggcctgc acgaccgcat taaagccatc
    22621 ggccaccgca tcgcacacgg cggcgaaaaa tacagcgagt ctgttttgat cgaccaggcc
    22681 gtaatggacg aactcaatgc ctgcattccg cttgcgccgc tgcacaaccc cgccaacatc
    22741 agcggcatcc ttgccgcaca ggaacatttc cccggtctgc ccaatgtcgg cgtgatggat
    22801 acttcgttcc accaaaccat gccggagcgt gcctacactt atgccgtgcc gcgcgagttg
    22861 cgtaaaaaat acgctttccg ccgctacggt ttccacggca ccagtatgcg ttacgttgcc
    22921 cctgaagccg cacgcatctt gggcaaacct ttggaagaca tccgcatgat tattgcccac
    22981 ttaggcaacg gcgcatccat taccgccatc aaaaacggca aatccgtcga taccagtatg
    23041 ggtttcacgc cgatcgaagg tttggtaatg ggtacacgtt gcggcgacat cgatccgggc
    23101 gtatacagct atctgacttc ccacgccggg atggatgttg cccaagtgga tgaaatgctg
    23161 aacaaaaaat caggtttgct cggtatttcc gaactttcca acgactgccg caccctcgaa
    23221 atcgccgccg acgaaggcca cgaaggcgcg cgcctcgccc tcgaagtcat gacctaccgc
    23281 ctcgccaaat acatcgcttc gatggctgtg ggctgcggcg gcgttgacgc actcgtgttc
    23341 accggcggta tcggcgaaaa ctcgcgtaat atccgtgcca aaaccgtttc ctatcttgat
    23401 ttcttgggtc tgcacatcga caccaaagcc aatatggaaa aacgctacgg caattcgggc
    23461 attatcagcc cgaccgattc ttctccggct gttttggttg tcccgaccaa tgaagaactg
    23521 atgattgcct gcgacactgc cgaacttgcc ggcatcttgt agccaaaaaa gggacgagtc
    23581 cgcaaaaatg ccgtctgaaa ttttcagacg gcattttgtt tggcgtttgg gcgtacaata
    23641 cggaaaacat gacgataagg aaacaaacca tggcacagtt tttcgccgtt catcccgaca
    23701 acccccaaga acgcctcatc aagcaggcgg tcgaaatcgt caataaaggc ggcgtggtcg
    23761 tttatccgac cgattcctgt tatgccttgg gctgcaaact cggcgataag gcggcgatgg
    23821 aacgtatact ctccatccgc aaaatcgatt tgaaacacca cctgaccctg atgtgcgcag
    23881 atttgagcga gttgggcaca tacgccaaag tcgacaacgt acagtttcgt cagcttaaag
    23941 ccgccacacc cgggccttat acttttattt tacaggcgac gaaggatgtg ccggcgcgca
    24001 cgctgcaccc gaaacgcaaa accatcgggc tgcgtattcc cgataatgcc attgcacaag
    24061 ccctgctggg ggaattgggc gagccgcttt taagctgcac cctgatgctg cccgaagacg
    24121 gcgaaccatt gaccgatcct tatgaaatcc gcgagcgttt ggaacacgcc gtcgatttgg
    24181 tgattgacgg cggctggtgc ggaaccgagc cgaccaccgt cgtcgatatg accgacggca
    24241 cggaattggt gcgccaaggt tgcggcgata cggcggtgtt cggtttgtag ggaaaccgat
    24301 gccgtctgaa gcatcggctg ttcagacggc attgcgcgcc ttgccggcgg cagtccgaaa
    24361 tgccggcgcg tatcgcgctc ggtcggaata tccgtttgaa acggcatttt gatgcattac
    24421 tgcaccgcaa tcggaattct cggttcgtag agcaggtcgt aggtcggctt gttgagcagg
    24481 tcttggagcg tgaaaccgtc cagatacgtg aaaaacgact tcattgcacc gccgagtatg
    24541 cccgtcagcc ggcaggacgg tgtaatcagg cattcgttgt tctcgcccat gcactcgacc
    24601 agctgcatcg gttcgaggtg gcggacaacc gagccgatgt tgatgcggtc gggcggtgtg
    24661 gcaagccgca gaccgccgcc ttttccgcgc acactgtgga ggaagccgcc tttgaccagc
    24721 gcggtaacga ccttcatcag atggcttttg gaaatgccgt aggttacggc gatggtactg
    24781 atgttgacca gcgcatcgtc gttgatggca gtgtagataa ggacgcgcag cccgtagtcc
    24841 gtatgttgtg tcaaatacat gattttctcg gtatggattg ttattcttat cggtacggtt
    24901 taaggttcac ggacaatacc ttaatggttg aaaccctgtc cgtcggggcg gtagaatgca
    24961 gcctgtctgc ggcggtatgc cgtctgaaac atccgcgcta ccgtttgaga atttgttatt
    25021 gtaactcaaa atcatgaaac cgttgaaacg acatcccgcc cttatcgggc tttcgcgtga
    25081 ccaccaccat tcgctttccc tgtgcgtgcg tctgttgcgg acgccggaag aaaggcatcg
    25141 ggacgaactc gaaccgcatt tttccgaatt ggaaacccat tttcgcgaag aagaaaccaa
    25201 gtttgcccca atttggcaga atgtcgccct cgaattgaaa caacgtttcg agaaagacca
    25261 cgcccgactg cggcagatga tggcaagctc cgaatacggt aacgcggcgt ggaataccgc
    25321 ttttgccaca accctgcgcg accacgcgcg ctttgaagaa cgcgagctgt ttcccgccgc
    25381 cgaaccgttt ttgccggcat gattccgttt tgcggcaaat atattaatga taaacaagga
    25441 acacacatga aatttaccaa gcaccccgtc tgggcaatgg cgttccgccc attttattcg
    25501 ctggcggctc tgtacggcgc attgtccgta ttgctgtggg gtttcggcta cacgggaacg
    25561 cacgagctgt ccggtttcta ttggcacgcg catgagatga tttggggtta tgccggactg
    25621 gtcgtcatcg ccttcctgct gaccgccgtc gccacttgga cggggcagcc gcccacgcgg
    25681 ggcggcgttc tggtcggctt gactatcttt tggctggctg cgcggattgt cgcctttatc
    25741 ccgggttggg gtgcgtcggc aagcggcata ctcggtacgc tgtttttctg gtacggcgcg
    25801 gtgtgcatgg ctttgcccgt tatccgttcg cagaatcaac gcaattatgt tgccgtgttc
    25861 gcgctgttcg tcttgggcgg tacgcacgcg gcgttccacg tccagctgca caacggcaac
    25921 ctaggcggac tcttgagcgg attgcagtcg ggcttggtga tggtgtcggg ttttatcggt
    25981 ctgattggta cgcggattat ttcgtttttt acgtccaaac ggttgaatgt gccgcagatt
    26041 cccagtccga aatgggtggc gcaggcttcg ctgtggctgc ccatgctgac cgccatgctg
    26101 atggcgcacg gcgtgatgcc ttggctgtct gccgtttttg cctttgcggc aggtgtgatt
    26161 tttaccgtgc aggtgtaccg ctggtggtat aaacccgtgt tgaaagagcc gatgctgtgg
    26221 attctgtttg ccggctatct gtttaccgga ttggggctga ttgcggtcgg cgcgtcttat
    26281 ttcaaacccg ctttcctcaa tctgggtgtg catctgatcg gggtcggcgg tatcggcgtg
    26341 ctgactttgg gcatgatggc gcgtaccgcg cttggtcata cgggcaatcc gatttatccg
    26401 ccgcccaaag ccgttcccgt tgcgttttgg ctgatgatgg cggcaaccgc cgtccgtatg
    26461 gttgccgtat tttcttccgg cactgcctac acgcacagca tccgcacctc ttcggttttg
    26521 tttgcactcg cgcttttggt gtatgcgtgg aagtatattc cttggctgat tcgtccgcgt
    26581 tcggacggca ggcccggttg agacaaaccg ccgcagattt cgggtctggg cggtttgctt
    26641 ttcagacggc agggcggtca gttgccgtcc agccagcggt cgcgtgtggt tttggcttct
    26701 tcaaaatagc ggtacagggc ttcgcggtcg tcggtggtca ggatgtttgc caaaacgtcc
    26761 aactgtttgc ccaagccttg aaccagttgc agcaggctgt ctttgttggc aaggcagatg
    26821 tccgcccaca cggcgggatg accggaggcg atgcgggtga agtcccgaaa gcccgtggcg
    26881 gcgaatttca gatattcctg tccgtcgggg tggtcgagaa tctggtggac ataggcgaag
    26941 gcggtcaggt ggggcatatg ggagacggcg gcgaaaaccg cgtcgtggcg ttgcgcgtcc
    27001 atcgtataaa tttccgcacc gaccgcgtgc cacaggtttt ctaccaaggc aatgccgtct
    27061 gaatgttcgc cgccgtgtgg cgtgatgatg agttttctgt ggcggaacag cccgaactgc
    27121 gcggcttgcg caccgcttct gtccgaaccg gcaatcgggt gggcggcgat gcagcggtgc
    27181 aggcggtcgg gcagacagcg gcggaaggct tcgatgaccg aagatttggt gctgccgaca
    27241 tcggaaatcc aagtgtgttc cggcaaaacg gggcgcagcg cggtcaaaat ggcaggaacg
    27301 gtggcgacgg gtgtggcaat cagtaccaag tccgcaccgc cgatgctgtc cgcgtcgatg
    27361 gcaacggaag cccggtcaat cacgccgcgt tccaatgcac gttcgaggtt gtcgcggtcg
    27421 gtgtcgatac cggtaacggt gcggacgagt ccctgccttt tgaggtcgag aacgaacgaa
    27481 ccgccgatca gccctacacc gatgagggca atatggttca aaatgggcat ttgtgtaaac
    27541 ggttttcgca aagtaccgtc atggtagcct atcggcggaa tatgccgcaa ggtcggcagg
    27601 aaaaaggaga agaaatggac aaaatcagag ttgccgccgt gcagatggtg tcgggcgtgt
    27661 cgccggaaac caacgtcgcc gccatgaaac gcctggtcgc acgggcggcg gagcagggtg
    27721 cggattgggt gctgctgccc gaatattggg tgctgatggg cgcaaacgat accgacaaac
    27781 tcgcgcttgc cgagcctttg ggcggcggac gctttcagac ggcattgagc gaaacggcga
    27841 aagaatgcgg cgtggtgctg ttcggcggaa ccgtgccgct gcaaagcccc gaggcgggca
    27901 aggtcatgaa tactttattg gtgtacgggc gcgacggcaa acggacgggg ctgtaccaca
    27961 aaatgcacct cttcggcttt tccggtttgg gcgaacgcta tgccgaagcc gataccatca
    28021 gcgcagggcg ggaagtgccg cacttgtcgg cagaaggcgt gtcggtggcg gcgggcattt
    28081 gttacgatgt ccgctttccc gaatttttcc gccgccagct gccgtttgac gtattgatgc
    28141 tgcccgctgc gtttacgcac acgacgggca aggcgcattg ggagctgctg ctgcgcgcgc
    28201 gtgccgtcga aaaccaatgt tacgtcgtgg cggcggcaca gggcggtttg cacgaaaacg
    28261 gacggcgcac gttcggacac agcatgattg tcgatccgtg gggcgacgta ttggacgtat
    28321 tacccgaagg cgaaggcatc gttacggcag acatcgatgc caaccgcctg aacagcgtcc
    28381 gcaaccgcct gcccgccttg aaataccggg ttttggatgc cgtctgaagg ttcagacggc
    28441 atcggtgccg gggaatcagc gggctgtagg atgggcttca gcctgccatt tccatcaatc
    28501 ccacatttct accgttttca tcgaatccat cgaatccgcc cctttcgacg acccagtcct
    28561 acgcaactga accgtcattc ccacggaagt gggaatctag aatctcgggg gtttcagtca
    28621 tttccgatag attcccgccg cgtcaggggt ctggattccc gcctgtgcgg gaatgacgaa
    28681 tttcaagatt acggtgttgt cggacgggtt tcgagattgc ggtgttgtcg gaacg
//
LOCUS       DAXHPV010000006        27797 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.006, whole genome shotgun sequence.
ACCESSION   DAXHPV010000006 DAXHPV010000000
VERSION     DAXHPV010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 27797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27797
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.006"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(351..1136)
                     /locus_tag="ACFM6C_000168"
     CDS             complement(351..1136)
                     /locus_tag="ACFM6C_000168"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HFC6157690.1"
                     /translation="MNRLYPHPIIAREGWPIIGGGLALSLLVSICCGWWSLPFWVFTV
                     FALQFFRDPAREIPLNPEAVLSPVDGRIVVVERARDPYRDVDALKISIFMNVFNVHSQ
                     KSPADCTVTKVVYNKGKFVNADLDKASTENERNAVLATTASGREITFVQVAGLVARRI
                     LCYTQAGAKLSRGERYGFIRFGSRVDMYLPVDAQAQVAIGDKVTGVSTVLARLPLTAP
                     QTESEPALQTAPVETAANPSAEQRQIEAAAAKIQAAVQDVLKD"
     gene            1291..4137
                     /gene="uvrA"
                     /locus_tag="ACFM6C_000169"
     CDS             1291..4137
                     /gene="uvrA"
                     /locus_tag="ACFM6C_000169"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HFC6157691.1"
                     /translation="MCNHHPQHSHDNDTIRIRGARTHNLKNIDLDIPRHKLVVVTGLS
                     GSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQMMDKPDVDLIEGLSPAISIEQKSTS
                     HNPRSTVGTVTEIHDYLRLLYARVGTPYCPEHNLPLSSQTVSQMVDAVLKLPEGTRVM
                     ILAPAVRERKGEFVDFFADLQAQGFARVRVDGEVYQLDEVPKLEKNIKHNIDVVIDRV
                     KVKADIKQRLAESFETALRHGNERALAMEMDSGEEHWFSARFACPVCSYSLPELEPRL
                     FSFNNPMGSCPTCDGLGNTNFFDPEKVVAHPELSLASGAIDGWDKRNQFYFQMIQSLA
                     RHYSFDVQAAWETLPAKIKKVVLHGSGKEVIDFTYLSERGTTFNRSHAFEGIIPNLER
                     RYRETDSETVREKLREYQNHRACPSCGGARLRKEARYVYVGGEPLHEVSAWPLTKTHR
                     FFETLDLDGNKKQIAEKILKEITERLGFLINVGLDYLNLSRSAETLSGGEAQRIRLAS
                     QIGSGLTGVMYVLDEPSIGLHQRDNDRLLATLKRLRDLGNSVIVVEHDEDAIREADFV
                     VDMGPGAGEHGGNVLIADTPENVAKCENSVTGQYLSGKKSIAVPSERTPVNPDRMLVL
                     KGARGNNLKNVTLELPLGLITCITGVSGSGKSTLINDTLAKITARELNRAQEEPAPYD
                     DIRGLEHLDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPLSRERGYNVGRFS
                     FNVKGGRCEACQGDGVIKVEMHFLPDVYVPCEVCHGKRYNRETLEIQYKGKNISQVLD
                     MTVEEAREFFDAVPTVSRKLQTLMDVGLGYIRLGQSATTLSGGEAQRVKLALELSKRD
                     TGRTLYILDEPTTGLHFADIALLLEVIDRLKGKGNSIVIIEHNLDVIKTADWIVDLGP
                     EGGDGGGRIIASGSPEEVAKVKGSYTGKYLKNIL"
     gene            complement(4169..4339)
                     /locus_tag="ACFM6C_000170"
     CDS             complement(4169..4339)
                     /locus_tag="ACFM6C_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157692.1"
                     /translation="MFLGIFIALSGILTLLEMFNVISSDMKWGMPLMFTCLGFSIIFD
                     SFKAKQNRKQKE"
     gene            complement(4354..4539)
                     /locus_tag="ACFM6C_000171"
     CDS             complement(4354..4539)
                     /locus_tag="ACFM6C_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002641191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157693.1"
                     /translation="MTNKIKPGQNTGNNGGIYQEIGSRGGRKDNYATIKDNQKAPPTQ
                     NPGSSWIQIKRTPDSSR"
     gene            complement(4555..4824)
                     /locus_tag="ACFM6C_000172"
     CDS             complement(4555..4824)
                     /locus_tag="ACFM6C_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157694.1"
                     /translation="MKIKFAHLRHPAVGGGYINFAVFDAKSTNGNHSVVLKELTTEAR
                     RNGLKIDQSALIFEQHGRTQFYGDKNLVDFLSANWYPQWTHTLTI"
     gene            4962..5903
                     /locus_tag="ACFM6C_000173"
     CDS             4962..5903
                     /locus_tag="ACFM6C_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HFC6157695.1"
                     /translation="MEYNAIMKTIAPSHIKPLMPELNQSQRNRIIFIDFYLCFLGKIN
                     RKDLMQAFQISPAVATRDFALYCSSFSKNLRFDTKSKFYLSTEDFEPQFPHSFENAIK
                     ILNGSLIFDIDSQHQPLLPFDLPPVLINPDVLIFSKISKALSLKKPLKISYHSISSGL
                     SEKVIVPLALVNDGFRWHLRAFDRTKNRFADFVLTRIIQANILLAENIEENETINNDI
                     DWNRIVKIELVPHPNHDEAKKVIEMDFGMTNGKLELALRASNIGYVLQQWRVDCSSDH
                     HIDDPAFRLWLLDNLVLYGINNAEHLAPAFDKKRSKP"
     gene            complement(6130..6396)
                     /locus_tag="ACFM6C_000174"
     CDS             complement(6130..6396)
                     /locus_tag="ACFM6C_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157696.1"
                     /translation="MKRQTVNQATACVRTAHTLHVDFEVPCNSQVGCVAQPRTRCWVC
                     RLRLAAAETPEEKAKDAAEEAKEEAKDAAEDAKEAAEDAKEEAK"
     gene            6530..6673
                     /locus_tag="ACFM6C_000175"
     CDS             6530..6673
                     /locus_tag="ACFM6C_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010358637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157697.1"
                     /translation="MARYRRNFIAGGTFFFTVKLADPKSRLLVEHIDFAGGLYGCAKT
                     IFL"
     gene            6645..6974
                     /locus_tag="ACFM6C_000176"
     CDS             6645..6974
                     /locus_tag="ACFM6C_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6157698.1"
                     /translation="MDVQKQYSFETVAVCVLPNHIHAIWTLPPDDADYSLRWRLIKTK
                     FSAHFPHAENLSASKQRRHERGIWQRCFYEHTVRDETDLQHRADYIHSNPIKQRMSRA
                     KTESRKK"
     gene            complement(7211..8101)
                     /gene="sucD"
                     /locus_tag="ACFM6C_000177"
     CDS             complement(7211..8101)
                     /gene="sucD"
                     /locus_tag="ACFM6C_000177"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016655272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HFC6157699.1"
                     /translation="MSVLINKDTKVLVQGFTGKNGTFHSEQALAYGTKVVGGVTPGKG
                     GQTHLNLPVFNTMKEAVKETGADASVIYVPAPFVLDSIVEAVDSGVGLVVVITEGVPT
                     LDMLKAKRYLETNGNGTRLVGPNCPGVITPGECKIGIMPGHIHTPGRIGIISRSGTLT
                     YEAVAQTTKLGLGQSTCIGIGGDPIPGMNQIDALKLFQEDPDTDAIIMIGEIGGTAEE
                     EAAEYIQSNVTKPVVGYIAGVTAPKGKRMGHAGAIISGGKGTAEEKFAAFEKAGIAYT
                     RSPAELGTTMLEVLKTKGLA"
     gene            complement(8112..9323)
                     /gene="sucC"
                     /locus_tag="ACFM6C_000178"
     CDS             complement(8112..9323)
                     /gene="sucC"
                     /locus_tag="ACFM6C_000178"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HFC6157700.1"
                     /translation="MEADSGHSTNLKEKSMNLHEYQAKELLASYGLPVQGGILAHNGE
                     EAAAAYDKLGGKFAVVKAQVHAGGRGKAGGVKVVKSREEAKEVAESLIGTNLVTYQTD
                     ANGQPVNSVLVCEDMYPVQTELYLGAVVDRSTRRITFMASTEGGVEIEKVAAETPEKI
                     FKVTVDPLVGLQPCQAREVAFQLGLKDKQINEFVKLMTGAYKAFVENDFALFEVNPLA
                     VRENGALACVDGKIGIDSNALYRLPKIAELRDKSQENERELKASEFDLNYVALEGNIG
                     CMVNGAGLAMATMDIIKLKGGQPANFLDVGGGATKDRVVEAFKLILEDKSVQGVLINI
                     FGGIVRCDMIAEAIVAAVKEINVDVPVVVRLEGNNAELGAKILNESGLKLTSADGLND
                     AAEKIVAAVNA"
     gene            complement(9377..9664)
                     /locus_tag="ACFM6C_000179"
     CDS             complement(9377..9664)
                     /locus_tag="ACFM6C_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157701.1"
                     /translation="MNKEIVGIFFIPMGIISMCMAALWQMYVMMTETYTLNRFKDKEL
                     VWRVALLFISFSLAVYLLCPNSRKKGIVFFILGGGGAAMYLLARMWLPFSK"
     gene            complement(9789..11222)
                     /gene="lpdA"
                     /locus_tag="ACFM6C_000180"
     CDS             complement(9789..11222)
                     /gene="lpdA"
                     /locus_tag="ACFM6C_000180"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003745605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HFC6157702.1"
                     /translation="MSQYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNAPA
                     LGGTCLNVGCIPSKALLQSSEHFHAAQHEFAEHGITVGDVKFDAAKMIERKDAIVTKL
                     TGGVKFLFQKNKVTSLFGTASFAGKNGDAYQIEVDNKGEKTVIEAKHVIVATGSVPRP
                     LPQVAIDNVNVLDNEGALNLTEVPAKLGVIGSGVIGLEMGSVWNRVGAEVTILEAAPT
                     FLAAADQQIAKEAFKYFTKEQGLSIELGVKIGDIKSEGKGVSVAYETAAGEAKTEVFD
                     KLIVAIGRIPNTKGLNAEAVGLEKDERGFIKVDGECRTNLPNVWAIGDVVRGPMLAHK
                     ASDEGVAVAERIAGQKPHIDFNNVPFVIYTDPEIAWVGKTEEQLKAEGVEYKKGTSGF
                     GANGRALAMGKAKGTVKVLADAKTDRILGVHMIGPVVSELVTEGVTALEFFASSEDIA
                     RIIHAHPTLSEVVHEAALAADKRALHG"
     gene            11419..11535
                     /locus_tag="ACFM6C_000181"
                     /pseudo
     CDS             11419..11535
                     /locus_tag="ACFM6C_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(11587..12780)
                     /gene="odhB"
                     /locus_tag="ACFM6C_000182"
     CDS             complement(11587..12780)
                     /gene="odhB"
                     /locus_tag="ACFM6C_000182"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045252 - oxoglutarate dehydrogenase
                     complex [Evidence IEA];
                     GO_function: GO:0004149 - dihydrolipoyllysine-residue
                     succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HFC6157703.1"
                     /translation="MIIDVKVPMLSESVSEGTLLEWKKKVGEAVARDEILIDIETDKV
                     VLEVPSPQAGVLVEIVAQDGETVVADQVLARIDTAATAAAEAPVAAPAEAAPAAAPAA
                     APDAAQNNAAMPAATKLAAETGVDVNALQGSGRDGRVLKEDVQNAAAKPAAAAAPAVA
                     LPAGARPEERVPMSRLRARVAERLLASQQENAILTTFNEVNMKPIMDLRAKYKEKFEK
                     EHGVKLGFMSFFVKAAVAALKKYPVVNASVDGKDIVYHGYFDIGIAIGSPRGLVVPIL
                     RDADQMSIADIEQAIVDYAKKAKDGKIAIEDLTGGTFSITNGGTFGSMMSTPIINPPQ
                     SAILGMHATKERAVVENGQVVVRPMMYLALSYDHRIIDGREAVLTLVAIKDALEDPAR
                     LLLDL"
     gene            complement(12880..15708)
                     /locus_tag="ACFM6C_000183"
     CDS             complement(12880..15708)
                     /locus_tag="ACFM6C_000183"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004591 - oxoglutarate dehydrogenase
                     (succinyl-transferring) activity [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HFC6157704.1"
                     /translation="MMDEKLNFSYLFGSNAPYIEELYEAFLENPDAVDEKWKQYFTDL
                     SKQPGTVAVDVAHTPIRESFVTLAKKKIASAVAGGADEAMLKKQVSVLRLISAYRIQG
                     VGAAQLDPLKRIPPRDIEALDPKFHGLSDADMALQFNMGEGDFANRGKLPLSQIISNL
                     KQTYCGHIALEYIYIPNTEERRWVRNYFESVLSTPHYNADQKRRILKEMTAAETLERY
                     LHTKYVGQKRFGVEGGESAIAGLNYLIQNAGKDGVEEVIIGMAHRGRLNVLVNILGKK
                     PGDLFAEFEGRAEIKLPSGDVKYHMGFSSDIATPHGPMHVSLAFNPSHLEIVNPVVEG
                     SARAKQKRLGENGRDKVLPVLIHGDSAFIGLGVNQATFNLSKTRGYTTGGTVHIVINN
                     QIGFTTSDIRDTRSTVHCTDIAKMVSAPVIHVNGDDPERVCFAIQAALDYRKKFHKDI
                     VIDVVCYRKWGHNEGDDPTLTQPMMYKKVSQHPGARALYTEQLIAEGVVTQAEADGYI
                     QAYRDALDKGEHVEQTTLSNFQRTQIDWSKYQGKDWREHIETGLPAADIERLTEKFTA
                     VPEGFALHPTAKRVIEARKAMASGKQAIDWGMAETLAYASLVTKGHGVRISGEDSGRG
                     TFSHRHAVLHDQKREKWDDGTYVPLRHMGEGMGEFLVIDSILNEEAVMAFEYGFACSA
                     PDKLTIWEAQFGDFANGAQVTIDQFLSSGETKWGRLCGLTTILPHGYDGQGPEHSSAR
                     VERWLQLCSENNMQVIMPSEASQMFHLLQRQVLGSYRKPLVIFMSKRLLRFKGAMSPL
                     ENFTEGSTFRPVIGDTAERASNDSVKRVVLCAGQVYYDLEACRAERKLEDDVAIVRVE
                     QLYPFPYDEVKAELAKYPNAKSVVWAQEEPKNQGAFYQIRHRIEDVISEEQKLSYAGR
                     PSSASPAVGYSSKHIAQLKQLVEDALAL"
     gene            complement(15913..17196)
                     /gene="gltA"
                     /locus_tag="ACFM6C_000184"
     CDS             complement(15913..17196)
                     /gene="gltA"
                     /locus_tag="ACFM6C_000184"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004108 - citrate (Si)-synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HFC6157705.1"
                     /translation="MSKSIKLNVPGQAGLELPVLEASIGHDVVDIRGLTKNTGLFSFD
                     PGFVSTASCESKITYIDGDQGLLYYRGYPIEQLAEKSDYLEVCYLLIYGELPTPEQKA
                     EFDNTVRRHTMVHEQLTWFFRGFRRDAHPMAMMVGVVGALSAFYQDSLDISNPEHRKI
                     AIYRLISKIPTIAAMCYRYSNGLPFNYPKNNLSYSENFLHMMFATPCEDYKPNPVLAR
                     ALDRIFILHADHEQNASTSTVRLAGSSGANPFACIAAGIACLWGASHGGANEAVLKML
                     DEIGDVSNVAAYMEGVKQRKYRLMGFGHRVYRNMDPRASIMRETCYEVLKELGLEDSP
                     KFKLAMELEQIALKDPFFIERKLYPNVDFYSGIVLSALGIPTEMFTVIFALSRSVGWI
                     SHWHEMISDPSLKIGRPRQLYTGSERRDYVPPGER"
     gene            complement(17308..17556)
                     /locus_tag="ACFM6C_000185"
     CDS             complement(17308..17556)
                     /locus_tag="ACFM6C_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HFC6157706.1"
                     /translation="MMVFDDIAKRKIRFQTRRGLLELDLIFGRFMEKEFEHLSDKELS
                     EFSEILEFQDQELLALINGHSETDKGHLIPMLEKIRRA"
     gene            complement(17560..18267)
                     /locus_tag="ACFM6C_000186"
     CDS             complement(17560..18267)
                     /locus_tag="ACFM6C_000186"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008177 - succinate dehydrogenase
                     (quinone) activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HFC6157707.1"
                     /translation="MEKMSFEIYRYNPDVDAKPYMQRYELELEPTDVKLLDALVRLKA
                     QDDTLSFRRSCREGICGSDGMNINGKNGLACLTDLRGLKQPVKIRPLPGLPVIRDLIV
                     DMTQFFKQYHSVKPYVVNDNPIDADKERLQTQEERKELDGLYECILCACCSTACPSFW
                     WNPDKFVGPSGLLNAYRFIADSRDTITNERLDNLNDPYRLFRCHTIMNCVDVCPKHLN
                     PTRAIGKIKEIMLKRAV"
     gene            complement(18387..20150)
                     /gene="sdhA"
                     /locus_tag="ACFM6C_000187"
     CDS             complement(18387..20150)
                     /gene="sdhA"
                     /locus_tag="ACFM6C_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HFC6157708.1"
                     /translation="MGFPVRKFDAVIVGGGGAGLRAALQLSKSGLNCAVLSKVFPTRS
                     HTVAAQGGISASLGNVQEDRWDWHMYDTVKGSDWLGDQDAIEFMCRAAPEAVIELEHM
                     GMPFDRVESGKIYQRPFGGHTAEHGKRAVERACAVADRTGHAMLHTLYQQNVRANTQF
                     FVEWTAQDLIRDENGDVVGVTAMEMETGEVYIFHAKAVMFATGGGGRIYASSTNAYMN
                     TGDGLGICARAGIPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGILLNADGERFMERY
                     APTVKDLASRDVVSRAMAMEIYEGRGCGKNKDHVLLKIDHIGAEKIMEKLPGIREISI
                     QFAGIDPIKDPIPVVPTTHYMMGGIPTNYQGEVVVPQGDEYEVPVKGLYAAGECACAS
                     VHGANRLGTNSLLDLVVFGKAAGDSMIKFIKEQSDWKPLPADAGELTRQRIERLDNQT
                     DGENVDALRRELQRSVQLHAGVFRTDEILSKGVREVMAIAERVKRTEIKDKSKVWNTA
                     RIEALELDNLIEVAKATLVSAEARKESRGAHASDDHPERDDENWMKHTLYHSDINTLS
                     YKPVHTKPLSVEYIKPAKRVY"
     gene            complement(20153..20494)
                     /gene="sdhD"
                     /locus_tag="ACFM6C_000188"
     CDS             complement(20153..20494)
                     /gene="sdhD"
                     /locus_tag="ACFM6C_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0045273 - respiratory chain complex II
                     (succinate dehydrogenase) [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, hydrophobic membrane
                     anchor protein"
                     /protein_id="HFC6157709.1"
                     /translation="MVERKLTGAHYGLRDWAMQRATAVIMLIYTVALLVVLFSLPKEY
                     SAWQAFFSQTWVKVFTQVSFIAVFLHAWVGIRDLWMDYIKPFGVRLFLQVATIVWLVG
                     CLVYSIKVIWG"
     gene            complement(20488..20865)
                     /gene="sdhC"
                     /locus_tag="ACFM6C_000189"
     CDS             complement(20488..20865)
                     /gene="sdhC"
                     /locus_tag="ACFM6C_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045273 - respiratory chain complex II
                     (succinate dehydrogenase) [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, cytochrome b556
                     subunit"
                     /protein_id="HFC6157710.1"
                     /translation="MSAKPRPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYF
                     LSGTLSQESAFETYRAIVSHPLVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTA
                     RNTAKFVFTAALVLTVILGALLW"
     gene            complement(21144..22547)
                     /locus_tag="ACFM6C_000190"
     CDS             complement(21144..22547)
                     /locus_tag="ACFM6C_000190"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HFC6157711.1"
                     /translation="MKKIQADVVVIGGGTAGMGAFRNARLHSDNVYLIENNVFGTTCA
                     RVGCMPSKLLIAAAEARHHALHTDPFGVHLDKDSIVVNGEEVMQRVKSERDRFVGFVV
                     ADVEEWPADKRIMGSAKFIDEHIVQIDEHTQITAKSFVIATGSRPVILPQWQSLGNRL
                     IINDDVFSWDTLPKRVAVFGPGVIGLELGQALHRLGVKVEIFGLGGIIGGISDPVVSD
                     EAKAVFGEELKLHLDAKTEVKLDADGNVEVHWEQDGEKGVFVAEYMLAAVGRRPNVDN
                     IGLENINIEKDARGVPVADPLTMQTSIPHIFIAGDASNQLPLLHEAADQGKIAGDNAG
                     RYPNIGGGLRRSTIGVVFTSPQIGFVGLKYAQVAAQYQADEFVIGEVSFKNQGRSRVM
                     LVNKGHMRLYAEKATGRFIGAEIVGPAAEHLAHLLAWAHQMKMTVPQMLDMPFYHPVI
                     EEGLRTALRDADAKLKA"
     gene            complement(22796..23533)
                     /locus_tag="ACFM6C_000191"
     CDS             complement(22796..23533)
                     /locus_tag="ACFM6C_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HFC6157712.1"
                     /translation="MALQDRTGQKVPSVVFRTRVGDTWKDVSTDDLFKGKKVVVFSLP
                     GAFTPTCSSSHLPRYNELFGAFKENGVDAIYCVSVNDTFVMNAWAAEEESDNIYMIPD
                     GNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVNDGVVEKMFIEPEEPGDPFKVSDADTM
                     LQFVAPDWKAQESVAIFTKPGCQFCAKAKQALQDKGLSYEEIVLGKDATVTSVRAITG
                     KMTAPQVFIGGKYIGGSEDLEAYLAKN"
     gene            complement(23810..26086)
                     /gene="metE"
                     /locus_tag="ACFM6C_000192"
     CDS             complement(23810..26086)
                     /gene="metE"
                     /locus_tag="ACFM6C_000192"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003871 -
                     5-methyltetrahydropteroyltriglutamate-homocysteine
                     S-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HFC6157713.1"
                     /translation="MTTLHFSGFPRVGAFRELKFAQEKYWRKEISEQELLAVAKDLRE
                     KNWKHQAAANADYVAAGDFTFYDHILDLQVATGAIPARFGFDSQNLSLEQFFQLARGN
                     KDQFAIEMTKWFDTNYHYLVPEFHADTEFKANAKHYVQQLQEAQALGLKAKPTIVGPL
                     TFLWVGKEKGVVEFDRLSLLPKLLPVYVEILTALVEAGAEWIQIDEPALAVDLPKEWV
                     EAYKDVYATLNKVSAKILLSTYFGSVAEHAALLKALPVDGLHIDLVRAPEQLDAFADY
                     DKVLSAGVIDGRNIWRANLNKVLKTVESLQAKLGDRLWISSSCSLLHTPFDLSVEEKL
                     KANKPDLYSWLAFTLQKTQELRVLKAALNEGRDSVAEELAASQAAAGSRANSSEIHRA
                     DVAKRLADLPANADQRKSPFADRIKAQQAWLNLPLLPTTNIGSFPQTTEIRQARAAFK
                     KGELSVADYEAAMKKEIALVVEEQEKLDLDVLVHGEAERNDMVEYFGELLSGFAFTQY
                     GWVQSYGSRCVKPPIIFGDVSRPEAMTVAWSTYAQSLTKRPMKGMLTGPVTILQWSFV
                     RNDIPRATVCKQIALALNDEVLDLEKAGIKVIQIDEPAIREGLPLKRADWDAYLNWAG
                     ESFRLSSAGCEDSTQIHTHMCYSEFNDILPAIAAMDADVITIETSRSDMELLTAFGEF
                     KYPNDIGPGVYDIHSPRVPTEAEVEHLLRKAIEVVPVERLWVNPDCGLKTRGWKETLE
                     QLQVMMNVTRKLRAELAK"
     gene            complement(26224..27102)
                     /gene="metF"
                     /locus_tag="ACFM6C_000193"
     CDS             complement(26224..27102)
                     /gene="metF"
                     /locus_tag="ACFM6C_000193"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HFC6157714.1"
                     /translation="MNYAKEINALNNSLSDLKGDINVSFEFFPPKNEQMETMLWDSIH
                     RLQTLHPKFVSVTYGANSGERDRTHGIVKRIKQETGLEAAPHLTGIDASPDELRQIAK
                     DYWDSGIRRIVALRGDEPAGYEKKPFYAEDLVKLLRSVADFDISVAAYPEVHPEAKSA
                     QADLINLKRKIDAGANHVITQFFFDVERYLRFRDRCVMLGIDVEIVPGILPVTNFKQL
                     GKMAQVTNVKIPSWLSQMYEGLDDDQGTRNLVAASIAIDMVKVLSREGVKDFHFYTLN
                     RSELTYAICHILGVRP"
     gene            27303..27578
                     /locus_tag="ACFM6C_000194"
     CDS             27303..27578
                     /locus_tag="ACFM6C_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HFC6157715.1"
                     /translation="MKPNIHPDNYRTVLFFDSSANEGWLIRSCAETHGKTMVWTDGKE
                     YPLFSLDTSSASHPVYTGKQRNVNTEGRASKFNQRFQSVMSSFRKDK"
     gene            27578..27703
                     /gene="ykgO"
                     /locus_tag="ACFM6C_000195"
     CDS             27578..27703
                     /gene="ykgO"
                     /locus_tag="ACFM6C_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HFC6157716.1"
                     /translation="MQVLSSLKTAKQRHRDCQIVRRKGKVYVICKSNPRFKARQR"
BASE COUNT         6925 a         7109 c         6662 g         7101 t
ORIGIN      
        1 gtaactaatg agttgtcgtt cccacgcagg cgggaatccg gtctcttcgg tttcagtcgt
       61 ttccgataaa tcgtcgtaac gttaagttcc cggattccca ctttcgtggg aatgacgcgg
      121 aaaggtttct gttttttaag tgttaggtaa ctaataagtc gtcattcccg cgcaggcggg
      181 aatccagtcc gtccggtttc agtcgtttcc gataaatcgt cgtaacgtta agtttctaga
      241 ttcccacttt cgtgggaatg acggtgtgaa cattagcaaa aattcaaaaa accaaacttc
      301 ctcattcgtg tgaatgatgg tactgatatt ttctatttca gtccgcaaaa ttaatctttc
      361 aacacatctt gcacagccgc ctgaatctta gccgccgctg cctcgatttg ccgttgttcg
      421 gcagatgggt ttgccgctgt ttcaaccgga gcagtttgta aagcaggctc agattcagtt
      481 tgcggcgcag tcagcggcaa acgcgccaat acagtgctga cgccggttac tttatcgcca
      541 atcgccactt gcgcctgcgc atcgacaggc agatacatat ccacgcgcga accgaagcgg
      601 ataaagccat aacgttcgcc gcgggacagt ttcgcacctg cttgggtgta gcacaaaata
      661 cggcgcgcca ccaaaccggc cacttgaaca aaagtaattt cacgacctga agccgtagtc
      721 gccaacaccg cattacgttc gttttccgtg ctggctttgt ccaaatccgc attcacgaat
      781 ttgcctttgt tatagaccac tttcgttacc gtacaatcgg caggcgattt ttgcgaatgc
      841 acgttgaaca cgttcataaa aatactgatt ttcaaagcat cgacatcacg atacggatcg
      901 cgtgcgcgtt cgaccaccac gatacggccg tcaaccgggc tcaacaccgc ttcaggattt
      961 agcggaatct cacgcgcagg gtcgcggaaa aactgcaatg caaatacggt aaacacccaa
     1021 aacggcaaag accaccagcc gcaacatatc gacaccagca ggctcaaagc caaaccgccg
     1081 ccaataatcg gccagccctc acgggcgata atcgggtggg ggtaaagacg gttcatttgt
     1141 catccttttg ttcaagcggg ttaaaattgc cgacattata gcggaatctg ccgtactccg
     1201 ctggcaaatg ccgtctgaac gcggcttcag acggcatccg agaaagtgct acaataccgg
     1261 ttttccttta tttttcaggc ggcatccatt atgtgcaacc atcatcccca acattcgcac
     1321 gacaacgaca ccatccgcat ccgcggcgcg cgcacgcata atttgaaaaa catcgattta
     1381 gacattccgc gccacaaact cgtggtggta acaggattgt cgggcagcgg caagtcgtcg
     1441 ctggcgtttg acacgctgta tgccgaaggg caacggcgtt atgtcgagag cctttccgcc
     1501 tatgcgcggc agtttttgca gatgatggac aaacccgatg tcgatttgat tgaaggtctg
     1561 tcgcctgcga tttccatcga gcagaaatcc accagccaca acccgcgttc caccgtcggc
     1621 acggtaacgg aaatccacga ctacctgcgc cttttgtacg cccgcgtcgg cacgccgtat
     1681 tgccccgaac acaatctgcc gttgtcgagc caaaccgtat cgcagatggt cgatgccgtc
     1741 ttaaaactgc cggaaggcac gcgcgtgatg attctggcgc cggcggtgcg cgagcgtaag
     1801 ggcgagtttg tcgatttctt tgccgacttg caggcacagg gttttgcgcg cgtgcgcgtg
     1861 gacggcgaag tctatcagtt ggacgaagtg ccgaagctgg aaaaaaacat caaacacaac
     1921 atcgacgtgg tcatcgaccg cgtgaaagtg aaggcggaca tcaagcagcg gctggcggaa
     1981 agttttgaaa ccgcgctgcg ccacggcaac gagcgcgcgc tggcgatgga gatggacagc
     2041 ggcgaagaac attggttttc cgcgcgtttt gcctgccccg tgtgttcgta cagcctgccc
     2101 gaattggagc cgcgcctctt ttcgttcaat aatccgatgg gctcctgccc gacttgcgac
     2161 ggcttgggca acaccaattt cttcgacccc gaaaaagtgg tcgcccaccc cgaattgtct
     2221 ctggcttcgg gcgcgattga cggctgggac aagcgcaacc agttctattt ccaaatgatt
     2281 cagtcgctgg cacggcatta cagttttgat gtgcaggctg cttgggaaac cctacctgca
     2341 aaaatcaaaa aagtcgtgtt gcacggctcg ggcaaggaag tcattgattt cacctaccta
     2401 tccgaacgcg gcaccacctt caaccgcagc cacgccttcg aaggcatcat tcccaatctc
     2461 gaacgccgct accgcgaaac cgacagcgaa accgtgcgcg aaaaactgcg cgaataccaa
     2521 aaccaccgcg cttgcccgag ctgcggcggc gcacgtttgc gcaaagaagc ccgctacgtt
     2581 tacgtcggcg gcgagccgtt gcacgaagtt tccgcctggc cgctgaccaa aacccaccga
     2641 ttctttgaaa cgctggattt ggacggcaac aaaaaacaaa tcgccgaaaa aatcctcaaa
     2701 gaaatcaccg aacgtctcgg ctttttgatt aatgtcgggc tggattacct gaatctctcc
     2761 cgttccgccg aaaccctttc cggcggcgaa gcccagcgca tccgcctcgc cagccaaatc
     2821 ggcagcggcc tgaccggcgt gatgtacgtt ttggacgaac cctccatcgg cctgcaccag
     2881 cgcgacaacg accgcctgct tgccaccctc aaacgcctgc gcgatttggg caacagcgtc
     2941 atcgtggtcg aacacgacga agacgccatc cgcgaagccg atttcgtcgt cgatatgggc
     3001 ccgggcgcag gcgaacacgg cggcaacgta ttgattgccg acacgcccga aaacgtcgcc
     3061 aaatgcgaaa actccgttac cggacaatac ctcagcggca aaaaatccat tgccgtgccg
     3121 tctgaacgca cgcccgtcaa tcccgaccga atgctcgtcc tcaaaggcgc gcgcggcaac
     3181 aacctcaaaa acgttaccct tgagctgccg ctcggtttga ttacctgcat caccggcgta
     3241 tccggcagcg gcaaatccac cctgattaac gacaccctcg ccaaaatcac tgcccgcgaa
     3301 ctcaaccgcg cccaagaaga acccgcccca tacgacgaca tccgcggcct cgaacacctc
     3361 gacaaagtca tcaacgtcga ccaatccccc atcggtcgca ccccgcgctc caaccccgcc
     3421 acctacaccg gcctgttcac ccccatccgc gaactcttcg ccggcgtacc cctctcgcgc
     3481 gaacgcggct acaacgtcgg cagattctcc ttcaacgtca aaggcggccg ctgcgaagcc
     3541 tgccaaggcg acggcgtgat taaagtcgaa atgcacttcc tgcccgacgt gtacgtcccc
     3601 tgcgaagtct gccacggcaa acgctacaac cgcgaaaccc tcgaaatcca atacaaaggc
     3661 aaaaacatca gtcaagtcct cgacatgacc gtcgaagaag cccgcgaatt cttcgacgcc
     3721 gtccccaccg tatcgcgcaa actgcaaacc ttgatggacg taggcttagg ctacatccgt
     3781 ctcggccaat ccgccaccac cctctccggc ggcgaagccc agcgcgtcaa actcgccttg
     3841 gaactctcca aacgcgacac cggcagaacg ctctacatcc tcgacgaacc caccaccggc
     3901 ctacacttcg ccgacatcgc cctgctgctg gaagtcatag accgtctgaa aggcaaaggc
     3961 aactcgatag tgattatcga gcataatctg gatgtgatta aaaccgccga ttggattgtg
     4021 gacttagggc cagaaggcgg cgacggcgga gggaggatta ttgcttcagg tagcccggag
     4081 gaagtggcga aggttaaggg gagttatact gggaagtatt tgaagaatat actttaaaaa
     4141 acgggatggt ttaaaccatc ccgttttttt attccttctg ttttcgattt tgtttggctt
     4201 tgaagctatc aaaaataatg ctaaatccca aacaggtgaa cattaaaggc atcccccatt
     4261 tcatatccga agaaataaca ttaaacattt ctaataatgt aagaatgcct gataaagcta
     4321 taaaaatacc taaaaacatt agaactatcc ttattatctg gagctatctg gagttctttt
     4381 aatttgaatc catgagcttc ctggattttg agtgggtggt gctttttgat tatctttaat
     4441 ggttgcgtag ttatcttttc gaccacctcg tgaaccaatt tcttgataaa ttccaccgtt
     4501 atttcctgta ttttgaccag gtttgatttt gttcgtcatt atcatctcca taatttaaat
     4561 agttaaagta tgagtccatt gcggatacca atttgcagat aaaaaatcta ctagattttt
     4621 gtctccatag aattgtgtac gcccatgttg ttcaaatatt aacgcagatt ggtcaatttt
     4681 taatccattt ctacgagctt cagtggtcaa ttccttcagt acgacactat ggttaccatt
     4741 agttgattta gcatcaaaaa cagcaaagtt aatatatcct ccacctacgg ctggatgtct
     4801 taagtgagca aattttattt tcataaataa atcctataaa aaattacata acagaaattt
     4861 taagtcagag agctactatg aagtagcttt ttgcattata tgcactcttt ttgattacgt
     4921 caagcaattt ttttgaattc atattgccat gaaaaagatt gatggaatat aatgcaatta
     4981 tgaaaacaat cgctccttcc catataaagc cccttatgcc agagttgaac caatctcaac
     5041 gcaataggat tatatttatt gatttctatc tatgctttct aggaaagata aatagaaaag
     5101 atttgatgca ggcatttcaa atttccccag ctgttgctac tagggatttt gcgctatatt
     5161 gctctagttt ttcgaaaaat ctccgttttg ataccaaaag taaattttac ctctctactg
     5221 aagactttga acctcaattc ccccattcat ttgaaaatgc aattaaaatt cttaatggca
     5281 gtttaatatt tgatattgat tcccaacatc aacctcttct tccgtttgat ttacctcctg
     5341 ttttaataaa tcctgatgtc ttaatctttt ctaaaatatc gaaagcatta tccttaaaaa
     5401 aacctctaaa aatctcatat cattcaattt catctggatt atctgagaaa gttattgtgc
     5461 ctcttgctct agttaatgac ggatttcgat ggcatttacg ggcattcgat agaacaaaaa
     5521 accgatttgc agattttgtc ctaacacgaa taattcaagc aaatatttta ttagctgaaa
     5581 atattgaaga aaatgaaacg attaacaatg atattgattg gaatagaatt gttaaaatcg
     5641 agttggttcc ccatcctaat catgatgaag ctaaaaaagt gattgaaatg gactttggaa
     5701 tgacaaatgg aaaattagaa ttggcgctta gagcttcaaa tatcggatat gttttacagc
     5761 aatggcgagt cgattgttcg tcagatcatc atatcgatga tcctgctttt agattatggc
     5821 tgttagataa tttagtttta tacggcatca acaatgctga acacttagcg cctgcctttg
     5881 ataaaaaacg tagcaagccg tagcctacat atccaaccga ccgcgtgcgt ggctgcgcca
     5941 cacacgcggt tgtttgattg atggctttct gttgtaaatt gaacttagtt aaaactaaca
     6001 ctttcagacg gcatgaaaaa tggccgtctg aaaactgaaa aagctttatc taaaacaact
     6061 accctaactc acaaaacaaa aaacggattc ccaatcattg gaatccgttt ttctgtaaag
     6121 ctatccgaat tatttagctt cttctttagc gtcttcagca gcttctttgg catcttccgc
     6181 tgcgtctttt gcttcttctt tagcctcttc agcggcgtct ttggcttttt cttcaggagt
     6241 ttctgcagca gcaagccgta gcctgcatac ccaacaccgc gtgcgtggct gcgccacaca
     6301 ccctacctgt gaattacacg gaacttcaaa atcaacgtgt agggtgtgtg cggtacgcac
     6361 gcacgcggtt gcttgattga cggtttgccg tttcaacttt taacttcgtt gaagctagcg
     6421 ctttcagacg gcctccaatg tcgtctgaaa gcgctagctt caacgaagtt aaaaacctta
     6481 aacaacaagc cattccttct ccaacgctca aaccaaaaac aaaaatccta tggcgcgtta
     6541 tcgcagaaac ttcattgccg gcggcacatt ctttttcacc gtcaaactcg ccgacccgaa
     6601 atcgcgcctg cttgtcgaac atatcgactt cgcgggcggc ttatatggat gtgcaaaaac
     6661 aatattcctt tgaaaccgtc gccgtatgcg tgctgccgaa ccatatccac gccatttgga
     6721 cgctgccacc cgacgatgcg gattattccc tgcgctggcg gctgattaaa accaaattct
     6781 ccgcacattt ccctcatgcc gaaaacctgt ctgccagcaa acagcggcgg cacgaacgcg
     6841 gtatttggca acggtgtttt tacgaacaca ccgtgcgcga tgaaacggat ttgcagcatc
     6901 gtgcggacta catccattcc aatcctatca aacaaagaat gtcgcgtgct aaaacagaat
     6961 cccgcaaaaa ataatattag tcttttcaaa tgcgatactt atccattccc ggacttcaaa
     7021 caaggcgtgt gcaacctgac ttacgggttt gctcctgttt gaccgataaa tattctgact
     7081 gcctcaaagg gcaaaaaata atgtgggtat gttgaggctg cctctttttg aaatgacaaa
     7141 caaaatgccg tctgaaacct gatttccggt ttcagacggc atttgatgtt caatcagttg
     7201 tcaaacctga ttatgccaaa ccttttgttt tcaacacttc cagcatggta gtgcccaact
     7261 cggcagggct gcgggtgtaa gcgataccgg ctttttcgaa agcggcgaat ttttcctcgg
     7321 cagtaccttt accgccggaa ataatcgcac cggcgtggcc catacgtttg cctttaggag
     7381 cggtaacacc agcaatgtaa cctacaacag gtttggttac gttggattgg atgtattcgg
     7441 ctgcttcttc ttccgcagta ccgccgattt caccgatcat gatgatggcg tcggtatctg
     7501 ggtcttcttg gaaaagtttc agtgcgtcga tttggttcat accgggaatc gggtcgccgc
     7561 cgataccgat acaggttgat tgacccaagc ccagtttggt ggtttgtgcc acggcttcgt
     7621 aagtcaatgt accggaacgg gaaataatac cgatgcggcc cggagtgtgg atgtggcccg
     7681 gcataatacc gattttgcac tcgcctgggg taatcacgcc cgggcagtta gggccgacca
     7741 agcgggtacc gttgccgttg gtttccaagt aacgtttggc tttgagcatg tccagagtcg
     7801 gcacgccttc ggtaatcaca accaccaagc ctacgccgga atcaacggct tcaacgatag
     7861 aatccaacac aaacggagcg ggaacgtaaa ttacagatgc atccgcgccg gtttctttaa
     7921 cggcttcttt catggtgttg aacacgggca ggttcaggtg ggtttgaccg cctttgcccg
     7981 gggtcacgcc gccgacaact ttagtgccgt aagccagagc ttgttcggag tggaaagtac
     8041 cgtttttacc ggtgaaacct tgaaccaata ctttggtgtc tttattaatc aatacgctca
     8101 ttcttttctc cttaggcgtt tacggctgcg acaatttttt cggctgcgtc attcaggccg
     8161 tctgcagaag tcagtttcag acctgattcg ttcaggattt tcgcgccgag ttcggcgttg
     8221 ttgccttcca aacgaacaac gacaggaacg tcgacgttga tttctttaac ggctgccacg
     8281 atggcttccg caatcatgtc gcaacgtacg ataccgccga agatgttgat caatacgcct
     8341 tgaacggatt tgtcttccag aatcagtttg aacgcttcaa ccacgcggtc tttggttgcg
     8401 ccgccgccaa cgtccaagaa gttggcaggt tggccgcctt tcagtttgat gatgtccata
     8461 gtggccatcg ccaaaccggc accgttcacc atacagccga tgttgccttc cagggcaaca
     8521 tagttcaggt caaattcaga agctttcaac tcgcgttcgt tttcttgaga tttgtcgcgc
     8581 aattcggcga ttttcggcag gcggtagagc gcgttgctgt cgatgccgat tttgccgtcc
     8641 acgcaggcga gcgcgccgtt ttcgcgaact gccagcgggt ttacttcaaa cagggcgaag
     8701 tcattttcga caaacgcttt gtacgcaccg gtcatcagtt tgacgaactc gttgatttgt
     8761 ttgtctttca agcccagttg gaacgcaact tcgcgagctt ggcaaggttg caggccgacc
     8821 agcggatcaa cggttacttt gaagattttt tcaggagttt cggcagcaac tttttcgatt
     8881 tccacgccgc cttcggtaga ggccatgaat gtaatgcggc gggtagaacg gtcaaccact
     8941 gcgcccaagt acagctcggt ttgaaccgga tacatgtctt cgcaaaccaa aacactgttg
     9001 acaggttggc cgttggcatc ggtttggtaa gttaccaagt tggtgccaat caggctttca
     9061 gccacttctt tagcttcttc gcggctttta acgactttta cgccgcccgc tttaccgcgg
     9121 ccgccggcgt gtacttgtgc tttgacaaca gcgaatttgc cgcccaattt gtcgtaagct
     9181 gcagcggctt cttcgccgtt gtgtgccaaa ataccgcctt gtacgggcaa accgtagcta
     9241 gccagcagtt ctttagcctg atactcgtgt aaattcatgg atttctcctt tagattagtg
     9301 gaatgccccg agtctgcctc caaatggcaa gcccgtgcgt ttcagactac ctttcggcgg
     9361 tcggaaaatc gtcgtttcac ttgctgaaag gcaaccacat ccgcgccagc agatacatgg
     9421 ctgcaccgcc tcccccgaga ataaaaaaga cgatgccttt tttacgcgaa ttcggacaga
     9481 gcagataaac ggcaaggctg aaactgataa acaacaatgc cacgcgccaa accaattctt
     9541 tatctttgaa acggttgagc gtataagttt cggtcatcat cacatacatc tgccacaatg
     9601 cggccataca catgctgatg atgcccatcg gtataaagaa aataccgact atttctttgt
     9661 tcataacgaa tgtaaatgct gtttgtttgt ctgacggaat tataaatcag aaaacggagc
     9721 tctcggaaca ttcaatttgt cgaaggcatt aaggtcgtct gaaaaatttc agacgacctt
     9781 aatgtctatc aaccgtgcaa agcgcgtttg tcggccgcca atgcagcttc gtgaaccact
     9841 tcggacaagg ttgggtgggc atggataatg cgggcgatgt cttcgctgct ggcgaagaat
     9901 tcgagcgcag tcacgccttc ggtaaccaat tcgctgacaa ccggaccaat catgtgtacg
     9961 cccaagatgc ggtcggtttt ggcgtctgcc aacactttaa ccgtaccttt ggctttgccc
    10021 attgccaatg cgcgaccatt cgcaccaaaa cctgaagtac cttttttgta ctccacgcct
    10081 tcggctttaa gctgttcttc ggttttaccc acccaagcga tttcaggatc ggtgtaaatc
    10141 acaaacggta cgttgttgaa atcgatatgc ggtttttgac cggcaatgcg ctcggcaacg
    10201 gcaacgcctt cgtcgctggc tttgtgtgcc aacatcgggc cgcgaaccac gtcgccgatt
    10261 gcccatacat taggcaggtt ggtgcggcat tcgccatcta ctttgataaa gccgcgctca
    10321 tctttttcca agccgacggc ttcagcgttc aggcctttgg tgtttggaat acggccgatg
    10381 gcaacgatca gtttgtcgaa tacttcggtt ttggcttcgc cggcagcagt ttcgtaagca
    10441 acggaaacgc ctttgccttc agatttgatg tcgccgattt tcacgcccaa ttcgatgctc
    10501 aaaccttgct ctttggtgaa gtatttgaag gcttctttgg cgatttgttg gtcggcggct
    10561 gccaggaagg tcggcgcagc ttcaagaatg gtaacttccg cacccacgcg gttccatacg
    10621 gaacccattt ccaaaccaat cacgccagaa ccgatcacgc cgagtttggc aggtacttcg
    10681 gtcaggttca atgcgccttc gttgtccaat acgttcacat tgtcgatagc gacttgtggc
    10741 agcggacgcg gtacggaacc ggtggctacg atgacgtgtt tggcttcgat aacggttttc
    10801 tcgcctttgt tatcgacttc gatttggtaa gcatcaccat ttttaccggc aaaggaagcc
    10861 gtaccgaaca ggctggttac tttatttttt tggaacagga atttcacacc gccggtcagt
    10921 ttggtcacga tggcatcttt gcgctcaatc attttggccg catcgaattt tacgtcgccg
    10981 acagtgatgc cgtgttcggc aaactcgtgt tgcgctgcgt ggaaatgttc gctggactgc
    11041 aacagggctt tggaagggat acagcctacg ttcaagcaag taccgcccaa tgcaggggca
    11101 ttgcctgctt tgttaacgcc tgcatcgaca caggcagttt tgaaacccag ttgtgcggca
    11161 cggatggcgg caacgtatcc gcccgggcct gcaccaatca ctactacatc atattgagac
    11221 atcgtgtcat cctttgcttt tagcagtatc tcaaaataaa aacgatactt ttcgtttctt
    11281 ttttattttg aatgactgcg ttttgatggt tttaagaaaa agccgtctga aagtccatat
    11341 ctgccgattc attcgaatca aatgtttcag acggcctcaa tcgttcgttg agcctattgt
    11401 agcacgatac tacattacgc tacatctaaa tatagtggat taaatttaaa tcaggacaag
    11461 gcgacgaagc cgcagacagt acagatagta cggcaaggcg aggcaacgcc gtactggttt
    11521 aaatttaatc cactataaaa attcagacgg ccttttcatt aacaaataaa aggccgtctg
    11581 aaacgattac agatccaaca acaggcgggc tgggtcttcc aacgcgtctt taatggctac
    11641 caaggtcaat acagcttcgc ggccgtcaat gatacggtgg tcgtaagaca gagccagata
    11701 catcattgga cggacaacaa cttggccgtt ttcaaccaca gcgcgctctt tagtggcgtg
    11761 catacccaaa atcgcagatt gaggcgggtt gatgatcggg gtagacatca tagaaccgaa
    11821 agtaccgccg ttggtaatac tgaatgtacc gccggtcaga tcttcgatag cgattttgcc
    11881 gtctttggct tttttcgcgt aatcaacaat tgcttgctcg atgtcggcaa tgctcatttg
    11941 gtcggcatca cgcaggattg gcacaaccaa accgcgtggg ctgccaatcg caataccgat
    12001 gtcgaagtag ccgtggtaca cgatgtcttt gccgtcaaca gaagcattca caaccgggta
    12061 ttttttcagg gcggcaacag cggctttaac gaagaaggac ataaagccca atttcacgcc
    12121 gtgttctttc tcgaattttt ctttgtactt cgcacgcaag tccatgattg gtttcatgtt
    12181 gacttcgttg aatgtagtca gaatggcgtt ttcttgttga gaagccaaga ggcgttctgc
    12241 aacacgggca cgcaggcggc tcattggtac gcgttcttca ggacgtgcgc cggcaggaag
    12301 tgcaacggca ggggctgcgg ctgcggcagg tttggcagcg gcattttgta cgtcttcttt
    12361 caatacgcga ccgtcacggc cggaaccttg caatgcgttc acgtcaacac cggtctcggc
    12421 agccagtttg gtggcagcag gcatagcggc gttgttttgt gcagcatcag gagcggcagc
    12481 aggagcggca gccggggcgg cttcggcagg agcggctacg ggtgcttcgg cagcggcagt
    12541 agcagctgta tcgatgcgtg ccaaaacttg gtcggcaaca acggtttcac cgtcttgcgc
    12601 tacgatttca accaatacgc cggcttgtgg agaaggtact tccaaaacca ctttgtccgt
    12661 ttcgatatcg atcaggattt cgtcacgggc aactgcttcg ccaacttttt tcttccattc
    12721 caagagcgtg ccttcagata cgctttcaga caacataggt acttttacat caataatcat
    12781 tttgtgtctc caatggcctt ttcagacggc ctgttgtgtg tttttaattc tgcatatggg
    12841 cattccatct gagcagactc agacggaatg ctacttggtt tacaatgcca aagcgtcttc
    12901 aaccaattgt ttcaattgag caatgtgttt gcttgagtag cccactgcag gcgatgcgct
    12961 gcttggacga ccggcataag acagtttttg ctcttcgcta ataacatctt cgatgcggtg
    13021 gcggatttgg tagaacgcgc cttggttttt cggctcttct tgcgcccaaa ccacagattt
    13081 tgcgttcgga tatttcgcca gttcggcttt aacctcatcg tatgggaacg gatacagctg
    13141 ctcaacgcgg acaatcgcaa catcatcttc cagtttacgt tcggctcgac aggcttccaa
    13201 gtcatagtaa acctgaccgg cacacaatac cacgcgtttc acgctgtcgt tgcttgcgcg
    13261 ttcggcggta tcgccgataa ccggacggaa agtcgaacct tcggtgaagt tttccagcgg
    13321 gctcattgcc cctttgaatc gcaacaggcg tttggacatg aaaattacca gcggtttgcg
    13381 gtatgaacct aagacttgac gttgcaagag gtggaacatt tgcgacgctt cagatggcat
    13441 gatgacttgc atattgttct cagaacacag ttgcaaccag cgttctacgc gtgcagaaga
    13501 gtgctcaggg ccttgaccgt cgtaaccgtg cggcaggatg gtggtcagac cgcacaagcg
    13561 accccatttg gtttcgcctg aagacaggaa ttggtcaatc gtcacttgcg cgccgttggc
    13621 gaagtcaccg aattgagctt cccaaatggt gagcttgtca ggagcggagc aggcaaagcc
    13681 gtactcgaac gccatcacgg cctcttcgtt caaaatggag tcgataacca ggaactcgcc
    13741 cattccttcg cccatatgtc gcagaggaac ataagtaccg tcgtcccatt tttcgcgttt
    13801 ttgatcgtgc aatactgcgt ggcggtgcga gaacgtaccg cggccggagt cctcaccgga
    13861 gatacgcacg ccatgacctt tggttacaag gcttgcgtat gccaaggttt cggccatacc
    13921 ccagtcgatg gcttgtttgc cggatgccat ggctttacgc gcttcaatca cacgttttgc
    13981 agtcggatgc agggcaaagc cttccggtac ggcggtaaat ttctcggtaa gacgctcaat
    14041 atccgcggca ggcaaaccgg tttcgatgtg ttcgcgccaa tctttacctt ggtatttgct
    14101 ccaatcgatt tgtgtgcgtt ggaaattgct caacgttgtt tgctcaacgt gttcgccttt
    14161 gtccaaagca tcgcggtagg cttggatgta accgtctgcc tcggcttgag ttaccacacc
    14221 ttcggcaatc agttgctcgg tgtacaaagc acgcgcacca ggatgttgcg atactttttt
    14281 gtacatcatc ggttgggtca aggtcggatc atcgccctcg ttgtgacccc atttacggta
    14341 gcagacaacg tcaatcacga tgtctttatg gaattttttg cggtaatcca aagcggcttg
    14401 gatagcaaag caaacgcgtt cgggatcatc gccgttcaca tggataaccg gggcggaaac
    14461 catttttgcg atatcggtac agtgtacggt tgaacgggta tcgcggatat cggaagtggt
    14521 aaagccgatt tggttgttga tgacgatatg aaccgtaccg ccggtggtat aaccgcgcgt
    14581 tttagacagg ttgaatgtcg cttggttgac tcccagaccg ataaatgcgg agtcgccgtg
    14641 aatcaatacc ggcaagactt tgtcgcggcc gttttcgccc aaacgttttt gtttagcgcg
    14701 cgcagaacct tccaccaccg ggttgacgat ttccaagtgt gacgggttga acgccaaaga
    14761 aacatgcatc gggccgtgcg gggtagcaat atcggagctg aagcccatat ggtatttcac
    14821 gtcgccgctg ggcagtttga tttcggcacg accttcaaat tcggcaaaca aatcgccggg
    14881 ttttttgccc aaaatgttca ccaaaacatt cagacggcca cggtgcgcca taccgatgat
    14941 gacttcttcc acgccgtctt taccggcgtt ttgaatcagg tagttcaaac cggcaatcgc
    15001 gctttcgccg ccttcgacac cgaaacgttt ctgaccgaca tatttggtat gcagataacg
    15061 ttccaaagtc tcggcagcag tcatctcttt caagatacgg cgtttttgat cggcattgta
    15121 atgcggtgtg gacaatacgc tttcaaaata attgcgtacc cagcggcgct cttcggtatt
    15181 gggaatatag atatattcca atgcgatgtg gccgcagtag gtttgtttga ggttgctgat
    15241 gatttgggac aaaggcagtt tgccgcgatt ggcaaaatcg ccctcgccca tattgaattg
    15301 aagcgccata tcggcatctg acagaccgtg gaatttcgga tcgagggctt caatatcgcg
    15361 cggggggata cgtttgagcg gatcaagttg ggctgcaccc acgccttgga tacgataggc
    15421 ggaaatcagc cgtaaaacgc tgacttgctt tttcagcatt gcctcatccg caccgcccgc
    15481 aacggcagat gcaattttct ttttcgccaa agtaacaaat gattcgcgaa tcggtgtgtg
    15541 tgcgacatcg acagcaaccg tccccggctg tttgctcaaa tcggtgaaat actgcttcca
    15601 tttttcatca accgcatcgg ggttttccaa aaaagcctcg tacaattcct caatgtaggg
    15661 tgcgttcgaa ccgaacaggt aagagaaatt gagtttttcg tccatcatgg cgtgcgctct
    15721 tttctttaaa atataaacaa agggtagaag tccgcgtcct gacggctaaa ctgatgccgt
    15781 ctgaaaagac attttattct accctatttt aaaccggatt gcttgtcttg atttcatccg
    15841 actacaatca gacggattcg ggaaacaatc cggttctctg atattgcctg tttgacaata
    15901 tattaatgta tgttacctct cgcctggcgg cacataatcg cggcgttccg aaccggtata
    15961 aagctggcgc gggcggccga ttttcagcga aggatcgcta atcatctcgt gccagtgcga
    16021 aatccagccc acgctgcgcg acagggcgaa gatgacggta aacatttcgg tcgggatgcc
    16081 cagcgcggac aggacgatgc cggaatagaa atcgacgttt ggatacagtt tgcgttcgat
    16141 aaagaacggg tctttcagcg caatctgttc caattccatc gccagtttga atttcggact
    16201 gtcttccaag cccaattcct tcaaaacttc atagcaggtt tcgcgcataa tgctggcacg
    16261 cggatccata ttgcggtaca cgcggtgacc gaagcccatc agacggtatt tgcgttgttt
    16321 cacaccttcc atgtatgcgg caacattaga cacatcgccg atttcgtcca acattttcaa
    16381 cacggcttcg ttcgcaccgc cgtgcgaagc accccacagg caggcgatac cggcagcaat
    16441 acaggcaaac gggttcgcac ccgaagaccc tgccagacgg acggttgaag ttgaggcgtt
    16501 ttgctcgtgg tcggcatgca aaataaagat gcggtcgagc gcgcgtgcca aaacgggatt
    16561 gggtttgtag tcttcacacg gcgtggcgaa catcatatga aggaagtttt cggaataaga
    16621 aagattattc ttcggataat tgaacggcag accgtttgaa tagcggtagc acattgccgc
    16681 aatggtcggg attttggaaa tcaggcggta aatcgcgatt ttgcggtgtt cgggattgct
    16741 aatgtccaag ctgtcttggt agaacgcaga cagcgcaccg accacgccga ccatcatcgc
    16801 catcggatgc gcgtcgcggc ggaacccccg gaagaaccaa gtcagctgtt catgcaccat
    16861 cgtgtggcgg cggacggtat tgtcaaattc tgccttttgc tcgggagtcg gcagttcgcc
    16921 gtaaatcaac aggtagcaga cttccaaata atcggacttt tcggccagct gctcgatggg
    16981 gtatccgcga taataaagca agccttgatc gccgtcgatg taagtaattt tagactcaca
    17041 gcttgcggtt gaaacaaatc cggggtcgaa ggaaaacaaa cctgtatttt ttgtcagccc
    17101 ccgaatgtca accacatcgt gcccgatgct ggcttccaat accggcagct ccaaacctgc
    17161 ctgacccggt acgttgagtt tgattgattt ggacatatta ttgctccttt gcaagttata
    17221 acccacgtta ctgcatccgc agcacgttct ttgccttcag acggcttttg cattttgaaa
    17281 tctgcctgca ggcagatttc agatgcctca tgcccgtctg attttttcaa gcatcgggat
    17341 aaggtgccct ttgtccgttt ccgaatgccc gttaatcaag gcaagcaatt cttgatcttg
    17401 aaattcaagg atttcggaaa actcggacag ctctttatcg ctcaaatgct cgaattcttt
    17461 ttccataaac ctgccgaaga ttaaatctaa ttccaacaat ccccggcggg tttgaaaacg
    17521 gattttccgt ttggcaatat cgtcaaaaac catcatttct taaacggccc gtttcaacat
    17581 aatctcttta atcttaccga tggctcgggt cggattcaag tgtttaggac atacgtctac
    17641 gcagttcata atggtgtggc aacggaacaa acggtatggg tcgttcagat tatccaaacg
    17701 ctcattagtg atggtatcac ggctgtccgc aatgaaacgg taagcattca gcaaaccgga
    17761 cggaccaacg aatttatcag ggttccacca aaatgacggg caggcagtcg aacagcaggc
    17821 gcacaaaata cactcgtaca aaccgtccaa ctctttacgc tcttcctgag tttgcagacg
    17881 ctctttgtcc gcatcaatcg gattatcgtt gacaacataa ggtttgacgg aatggtattg
    17941 tttgaagaac tgggtcatat ccacaatcag gtcacggata acaggcagac ctggcagagg
    18001 acgaatttta accggctgtt tcaagccacg cagatcggtc aaacacgcca agccgttttt
    18061 gccgttgatg ttcataccgt cagaaccgca aatcccttcg cggcaggagc ggcggaaaga
    18121 caaggtatcg tcttgtgctt tcaggcgtac caaagcatcc aaaagtttca cgtcggtcgg
    18181 ttccaattcc aactcgtaac gctgcatata aggcttggca tcaacatccg ggttgtaacg
    18241 gtaaatttca aaactcattt tttccatgag aagtgttcct tttctcatca actgcccaat
    18301 gattttgtat tataaattca agcagttcaa tgtgggtatg gttagatttc agacgacctt
    18361 tgaggcgaag accgtctgaa aacgcatcaa taaacgcgct tggccggttt gatgtattcc
    18421 acgctcaaag gcttggtgtg caccggtttg taggacaagg tattgatatc tgaatggtac
    18481 agcgtatgtt tcatccagtt ttcatcatcg cgctcaggat ggtcgtctga agcgtgcgca
    18541 ccgcgtgatt ctttacgtgc ttcggcagac accaaagtcg ctttcgccac ttcaatcagg
    18601 ttatccaatt ccaaagcctc gatacgcgcg gtattccaca ctttgctctt gtctttgatt
    18661 tcggtacgtt tcacacgctc ggcaatcgcc atgacttctc gaacgccttt gctcagaatc
    18721 tcatcagtac ggaacacgcc ggcgtgcagt tgtacagagc gttgcagttc gcggcgcaat
    18781 gcatcaacgt tttcgccatc agtttgattg tccaaacgct cgatacgttg gcgggtcagc
    18841 tcgcccgcat ccgcaggcaa aggtttccag tcgctttgct ctttgatgaa tttaatcatg
    18901 ctgtcgccgg cagctttacc gaacaccacc aagtccagca gagagttcgt acccaaacgg
    18961 ttcgcaccgt gtacggaagc acaggcgcac tcacctgcgg catacaggcc ttttacaggc
    19021 acttcgtatt cgtctccttg cggcacaacg acttcgcctt ggtaattggt cggaatgccg
    19081 cccatcatat agtgggtagt cggcacaaca ggaatcgggt ctttaatcgg atcgataccg
    19141 gcgaactgaa tggaaatctc gcggatgccc ggcagttttt ccataatttt ttctgcgccg
    19201 atatggtcga ttttcagtaa gacatggtct ttgtttttac cgcagccgcg accttcgtag
    19261 atttccatcg ccatcgcgcg ggaaacaacg tcgcgagaag ccaagtcttt tacggtcggc
    19321 gcatagcgct ccataaagcg ttcgccgtcg gcgttcaaca aaataccgcc ttcaccgcgt
    19381 acaccttcgg taatcaacac gcctgcacct gccacacctg tcgggtggaa ttgccagaac
    19441 tccatatctt ccaacggaat acccgcacgc gcgcaaatgc ccaaaccatc gccggtattc
    19501 atataggcat tggtagaaga agcataaata cgaccgccac cgccggtagc aaacatcaca
    19561 gctttagcgt ggaaaatata aacttcgccg gtttccattt ccatggcggt tacgccgacg
    19621 acatcgccgt tttcatcacg aatcaaatct tgtgccgtcc attccacaaa gaattgcgta
    19681 ttggcacgga cgttttgttg gtacaaagta tgcagcatcg catgacctgt acggtcggca
    19741 accgcacagg cgcgttctac cgcgcgttta ccgtgttcgg cagtatggcc gccgaaagga
    19801 cgctgataaa ttttaccgct ttccacacgg tcaaaaggca tacccatgtg ttccaactca
    19861 attacggctt caggcgcggc gcggcacata aactcaatcg catcttggtc gcccaaccag
    19921 tcggaacctt tcacggtatc gtacatgtgc cagtcccaac ggtcttcctg cacattaccc
    19981 agagaggcgg aaataccgcc ctgcgccgct acggtatgcg aacgggtcgg gaacacttta
    20041 gacaaaacgg cacaattcag accggatttg gataattgga gggctgcgcg taaacctgca
    20101 ccaccaccgc cgacaatcac ggcatcaaac ttgcgaacag gaaaacccat acttaccccc
    20161 aaattacttt aattgaatac accaagcagc cgaccagcca gacgatggtg gcaacctgca
    20221 aaaacaaacg cacgccgaag ggtttgatat agtccatcca caaatcgcgg atacccaccc
    20281 aagcgtgcaa gaatacggcg atgaagctca cttgggtaaa tacttttacc caagtttgac
    20341 taaaaaatgc ctgccatgcc gaatattctt taggcaggga aaatagaacc actaaaagtg
    20401 caacggtata aatcaacata ataaccgcag tcgcacgttg catcgcccaa tcgcgcaaac
    20461 cgtaatgggc accggtcaat ttacgttcta ccataacaac gctcccaaaa tgacagtcag
    20521 caccaaagct gcggtaaaga caaatttagc ggtgttccgt gcagtattca gctcaagacc
    20581 tttgtgcgca tccaaaaata aaaagcggat accggcaagg gaatggtgca gataagccca
    20641 caatacgccg attaagacca gcttgaccaa aggatgggaa acaatggcac ggtaagtttc
    20701 aaatgcagat tcttgactta gggtgccgga caggaaatac agcaggaaag gcagcataat
    20761 aaacagcccg accccgctga tgcggtgaag gatggaaact atcccgggta tcggcagacg
    20821 gatgttcggc aaatccagat aaacaggacg cggtttggca gacatagtca attcctctgt
    20881 agttatatat cgactcaaaa accgtaaacc cattgctaca ctgggttaca taaacgttaa
    20941 tttacctgtt ttatcccatt ttgaacagtg tattttaaaa acaaactgat agattttgac
    21001 aaacacgcgt ggaaacagca gattaaaaga aagattttta gttttgccgc ccccttcccg
    21061 acacggtatc agcatccgac cccatcccca aaaacaaaat gccgtctgaa aaaatttcag
    21121 acggcattgt tttgccatat cggtcaggct ttcaatttcg catcggcatc gcgcaacgcg
    21181 gtacgcagac cttcctcgat aacgggatgg tagaacggca tatccagcat ttgcggaacg
    21241 gtcatcttca tttgatgcgc ccatgccaac aagtgcgcca aatgttcggc ggcagggcct
    21301 acgatttccg cgccgataaa gcggccggtg gctttttcgg catacaggcg catatggcct
    21361 ttgttcacca gcatcacgcg gctgcggcct tggtttttga acgatacttc gccgatgaca
    21421 aattcgtcgg cttggtattg cgcggcaacc tgcgcgtatt tcagaccgac aaagccgatt
    21481 tgcggactgg taaacaccac gccgatggtg ctgcgccgca aaccgccgcc gatattcgga
    21541 tagcgacccg cattgtcgcc ggcaatctta ccttggtcgg cggcttcgtg cagcaagggt
    21601 agttggttag acgcgtcacc cgcaataaag atatgcggaa tgctggtctg catagtcaac
    21661 gggtcggcaa cgggtacgcc gcgcgcatct ttttcgatat tgatgttttc caaaccgata
    21721 ttgtccacgt tcggacggcg gcctacggct gccagcatat attcggcaac aaatacgcct
    21781 ttttcgccat cctgctccca atggacttct acattgccat ctgcatcgag tttgacctcg
    21841 gttttggcat ccagatgcag tttcaattct tcaccgaaca cggctttcgc ctcgtctgaa
    21901 acgacggggt cggaaatgcc gccgatgatg ccacccaaac cgaaaatttc aactttcacg
    21961 cccaaacggt gcaatgcctg acccagttcc aaaccgataa cacccggtcc gaacacggca
    22021 acgcgcttag gcagcgtatc ccatgagaaa acgtcatcgt tgataatcaa acgattgccc
    22081 aaagactgcc attgcggcag gatgacggga cgcgaaccgg tagcaatcac gaaacttttt
    22141 gccgtaattt gagtatgctc gtcgatttgg acgatatgct cgtcgataaa tttagccgaa
    22201 cccataatgc gcttgtcggc aggccactct tccacatcgg caacgacaaa gccgacaaaa
    22261 cggtcacgct cggatttaac gcgctgcatg acctcttcac cgttgacgac gatgctgtct
    22321 ttgtccaaat gcacgccgaa cgggtcggta tgcaatgcgt gatgacgcgc ctctgcggcg
    22381 gcaatcaaga gtttggaagg catacagccc acgcgcgcgc aggttgtgcc gaacacattg
    22441 ttttcaatca ggtaaacatt atccgaatgt aaacgggcat tgcgaaacgc acccataccg
    22501 gcagtaccgc cgccgattac gacgacatcc gcttgaattt ttttcataat ctttgtcctt
    22561 ccgttttcgt ctgaagcatt gccgacacag aacatatcgg tttcagacag catttaaata
    22621 ttttcccaat caaaaacatc attcagataa ataaaaacaa aatttcgatt gagtgcaaca
    22681 atatccaaat tctcttataa atatagagtt attcggagcg gcagtgtaga accgcccgaa
    22741 taactctatc cggtatatca gacagtttaa tcaaaccgcc ttaagcaaac agctatcagt
    22801 ttttagccaa gtaagcttcc aaatcttcgc tgccgccgat gtatttgccg ccgatgaaga
    22861 cttgaggggc agtcatcttg ccggtaatgg cgcgaacgga agtaacggtt gcatctttgc
    22921 ccaatacgat ttcttcgtaa gacaaacctt tgtcttgcaa agcttgtttg gctttagcgc
    22981 agaattggca acctggttta gtgaaaattg ccacagactc ttgagccttc caatcgggag
    23041 caacgaattg cagcatagta tctgcatcgg atactttgaa cggatcgccc ggttcttcag
    23101 gttcgatgaa cattttttca accacgccgt cgttaaccag catggagtaa cgccaagagc
    23161 gtttaccgaa gcccaagtct tctttaccga ccagcatacc cataccttcg gtaaattcgc
    23221 cgttgccgtc aggaatcatg tagatgttgt cggattcttc ttcggcagcc caagcgttca
    23281 ttacgaacgt atcgtttaca gatacgcagt agattgcgtc aacgccgttt tctttgaacg
    23341 cgccgaacaa ttcgttgtaa cgcggcaggt gtgaagaaga acaagtcggg gtaaatgcac
    23401 cgggcaggga gaatacgact acttttttgc ctttgaacaa atcatcggta gacacatctt
    23461 tccaagtgtc gccgacgcgg gtgcggaata ctacggaagg tactttttga ccggtacgat
    23521 cttgcaaagc cattttgagc tccttaatag ataggtttaa gaaatgattg tgaatcgctg
    23581 ggcattctac cccatacaaa atgatttgta taatttatag ttcaaataat attaattatt
    23641 caaaactatt aatcaccaac ctcgaccaac ttcttacagt atataaagcc atgcctaaaa
    23701 aaaacaagtc ttatttgaga aaaattctta gaaacccccc tacgctcatt tgaaaacaga
    23761 aatgccgtct gaaaagtatt cagacggcat ccaatcacgt tatccctgct tatttagcca
    23821 gttcggcacg cagtttgcgg gttacgttca tcatcacttg gagttgttcc agagtttctt
    23881 tccagccacg tgttttcagg ccacagtctg ggttaaccca cagacgttca accggtacaa
    23941 cctcgatggc tttgcgcaac aggtgctcaa cttcagcttc agtcggtacg cgcgggctgt
    24001 ggatgtcgta aacgcctggg ccgatgtcgt tcgggtattt gaattcgccg aacgcggtca
    24061 agagttccat atcggaacgt gaagtttcga tggtgatgac atcagcatcc atagcggcga
    24121 tggccggcaa gatgtcgttg aactcggagt aacacatatg ggtgtggatt tgggtgctgt
    24181 cttcgcaacc ggcagaggac aggcggaagg attcgcccgc ccagttcagg taggcatccc
    24241 aatcggcgcg tttcaaaggc agaccttcgc ggatggcagg ttcgtcaatt tggatgactt
    24301 tgatgccggc tttttccaga tccaatactt cgtcgttcag ggccagtgcg atttgtttgc
    24361 atacggtagc gcgaggaata tcgttgcgga cgaaagacca ttgcagaatg gtaacaggac
    24421 cggtcaacat gcctttcatc gggcgtttgg tcaggctttg tgcgtaagta gaccaagcca
    24481 cagtcatggc ttcaggacgg cttacgtcac cgaagataat cggtggttta acacaacgtg
    24541 agccgtagct ttgtacccag ccgtattggg tgaatgcaaa accgctcaac aattcgccga
    24601 agtattcgac catgtcgtta cgctcggctt cgccgtgtac cagtacgtcc aaatccagtt
    24661 tttcttgttc ttcaaccacc aaggcgattt cttttttcat cgcagcttcg taatcggcga
    24721 cagacagttc gccttttttg aaagctgcac gtgcttggcg gatttcggta gtttgcggga
    24781 aagaaccgat gttggtcgtc ggcagcagag gcaggttcaa ccatgcttgt tgcgctttga
    24841 tacggtcggc aaatggagat ttgcgttggt ctgcgttggc aggcaaatca gccaggcgtt
    24901 tggcaacgtc tgcacggtgg atttcgctgc tgttggcgcg tgagccggcg gcagcttggc
    24961 tggcggcgag ttcttcggca acagaatcac ggccttcgtt caatgcagct ttcagaacgc
    25021 gcaattcttg ggttttttgc agggtgaatg ccaaccaaga gtacaggtca ggtttgttgg
    25081 ctttcagttt ttcttcaact gacaagtcaa atggagtgtg cagcagagag caagagctgg
    25141 agatccacaa acggtcgccc agtttggctt gcagagactc aacagttttc aaaactttgt
    25201 tcaggttggc gcgccaaata ttgcggccgt caatcacgcc ggcggacagg actttgtcgt
    25261 agtcggcgaa cgcgtccagt tgctcgggag cgcgtaccaa gtcgatgtgc agaccgtcaa
    25321 caggcagggc tttcagcaat gcggcgtgtt cggcaacaga accgaagtaa gtgctcaaca
    25381 ggattttggc acttactttg ttcaaagtag cgtaaacgtc tttgtaggct tccacccatt
    25441 ctttaggcaa atcgacagcc aaagcaggct cgtcgatttg aatccactcg gcaccggctt
    25501 caaccaaagc agtcaggatt tcaacgtaaa caggcaacag tttaggcaac aggctcagac
    25561 ggtcgaattc gacgacgcct ttttctttac ccacccacag gaaagtcaac ggaccgacga
    25621 tggtcggttt ggctttcaga ccgagggctt gggcttcttg caattgttgg acgtagtgtt
    25681 tggcattggc tttgaattcg gtatcggcgt ggaattcagg caccaagtag tggtagttgg
    25741 tgtcgaacca tttggtcatt tcgatagcga attggtcttt gttaccgcgc gccagttgga
    25801 agaattgttc caaagacagg ttttggctgt cgaagccgaa gcgggcggga atcgcgccgg
    25861 tggcgacttg caggtcgagg atgtggtcgt agaaagtgaa atcgcctgcg gcaacgtaat
    25921 cggcgttggc agcagcttgg tgtttccagt ttttctcgcg caagtcttta gcaacagcca
    25981 gcaattcttg ctcgctgatt tctttgcgcc agtatttttc ttgtgcgaat ttcaattcgc
    26041 ggaaggcgcc gacacgcggg aagcctgaga aatgtaatgt tgtcatgttg aactctccag
    26101 ttggattttg taaggaccgg ttcgatccga atcggccggt attgtaaatc agaatggctc
    26161 ggatggggcg gtgttttgct ttttagacac cttagatgcc gtctgaaact gtttgatacg
    26221 gctttaaggg cgcacgccta aaatatggca aatggcgtaa gtcagctcgc tgcggttaag
    26281 cgtatagaag tggaaatctt tcacgccttc gcgggacagg actttgacca tatcgatggc
    26341 gatacttgcc gccaccagat tgcgcgtgcc ttggtcgtcg tccaaacctt catacatttg
    26401 cgacagccag cttgggattt tgacgttggt tacctgcgcc attttgccga gctgcttgaa
    26461 gttggtaacg ggcaggatgc cggggacgat ttccacatcg atgcccaaca tcacgcagcg
    26521 gtcgcggaag cgcaggtagc gttccacatc gaagaagaat tgggtgatga cgtggttcgc
    26581 gcccgcatcg attttgcgtt tcaaattaat caggtcggct tgtgcggatt tcgcttcggg
    26641 atgcacttcg ggatatgccg ctacagaaat gtcgaagtcg gcgacggagc gcaacagttt
    26701 gaccaagtct tcggcgtaaa acggtttttt ctcataaccg gccggctcgt ctccgcgcag
    26761 ggcgacaatg cggcggatgc cgctgtccca ataatctttg gcaatttggc gcaattcgtc
    26821 gggagaagcg tcgataccgg tcaggtgagg cgcggcttcc aagccggttt cctgtttgat
    26881 gcgtttgacg atgccgtgcg tgcggtcgcg ttcgccggaa tttgcgccgt aagttacgga
    26941 tacgaacttg ggatgcaggg tttgcagacg gtggatggag tcccacagca tcgtttccat
    27001 ttgttcgttt ttcggcggga aaaattcaaa cgaaacgtta atgtcgcctt tcaaatcaga
    27061 aagactgtta tttaacgcat tgatttcttt tgcataattc atggctgcgt accttttatt
    27121 atcttttata tgatattttc aggcaacata ataaagttac gccaaacatg agtcaatttc
    27181 aaaattttca gatttatcat gaaaatttct aatatattac aaaaatagtt aaatttcctt
    27241 gtacaagcct tctaatttat gataaagttt gttatgttat aacaattcaa ctaaggcgat
    27301 atatgaaacc gaatattcat cctgacaatt atcgaaccgt cctttttttc gacagcagcg
    27361 ccaatgaagg ctggttaatc cgctcctgtg ccgaaacaca cggaaaaacg atggtttgga
    27421 cagacggcaa agaatatccg ctgttttcgc tggatacttc ttccgcatcc catcccgtct
    27481 atactggcaa acagcgcaac gtcaacaccg aaggccgtgc cagcaaattc aaccaacgtt
    27541 tccaatccgt catgtcatcg tttagaaagg acaaataatg caggttctgt cttcactcaa
    27601 aaccgccaaa caacgccacc gcgactgtca gattgtcaga cgtaaaggca aagtttacgt
    27661 catctgcaaa agcaatccgc gttttaaagc gcgccaacgc tgaccccctg cccttcctgc
    27721 ttcggttgta tagtggatta acaaaaatca ggacaaggcg acgaagccgc agacagtaca
    27781 aatagtacgg aaccgat
//
LOCUS       DAXHPV010000007        26276 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.007, whole genome shotgun sequence.
ACCESSION   DAXHPV010000007 DAXHPV010000000
VERSION     DAXHPV010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 26276)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26276)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26276
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.007"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(12..1307)
                     /locus_tag="ACFM6C_000196"
     CDS             complement(12..1307)
                     /locus_tag="ACFM6C_000196"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HFC6157717.1"
                     /translation="MIRPDFQEYLPSYYFSSVNPHTVYPKLQCRLKTDTCIIGGGLSG
                     LCTALPLAEQGHETVVLEAARIGFGASGRSGGQVISDYACGMGEIEKQVGLEQAQWFW
                     QQSLQAVELVDERVRKHAIDCDWQRGYATVAVRPQHWEELQQWHEHAQRHYGASHYQL
                     WDKAELKQQLDSDMYQGAQFDPLSGHLHPLNYTLGVAGAAAEAGAQIFEQSPMTRIEP
                     HQNGWLVYTPEGSVECKNLVYAVNTYAGLNPIFQPLERKAIAVSTFIIATEPLGARAK
                     GLIRNNMAVCDNRHILDYYRLSADGRLLFGGKDNEFIDNPARMTELVRQDMLKVFPQL
                     DDVKIEYSWGGECDITANLVPHFGRLAANVFYAQGYSGHGMAITGIAGLAVAEAILGD
                     ECRLKPFERLRQPNIILQPFLRKLGSFLGSKYYQWKDSR"
     gene            complement(1433..2320)
                     /locus_tag="ACFM6C_000197"
     CDS             complement(1433..2320)
                     /locus_tag="ACFM6C_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HFC6157718.1"
                     /translation="MQKSKLSWFLKLMLALSLAFLYIPLVVLVIYSFNESKLVTVWGG
                     FSTKWYGALLENDTILEAAWLSLRIAVVSSLAAVVLGTLAGYAMARIKRFRGSTLFAG
                     MISAPMVMPDVITGLSMLLLIIQVQIFLQGSEWLQHLYFDRGFFTIFLGHTTLCMAYI
                     TVVIRSRLVELDQSLEEAAMDLGARPLKIFFVITLPLIAPAIASGFLLGITLSLDDLV
                     ITSFLSGPGSSTLPQVIFSKIKLGLDPQMNVLATILIGIIGTLVIIVNYWMMRQATKR
                     DREAAEAYRQEKLAAEKAN"
     gene            complement(2320..3285)
                     /locus_tag="ACFM6C_000198"
     CDS             complement(2320..3285)
                     /locus_tag="ACFM6C_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HFC6157719.1"
                     /translation="MNLNKLKNKLFRRPGQRAVIAVPYIWLLVLFLIPFAIVLKISFA
                     EQEIAIPPFTPLTSIDEDLGRLNIAISYQNYADIFQNFWHTLNPFGDSENSNIYLMTY
                     WSSIKTALTTTVICLLVGYPTAYAISRANPSVRNGLLLAIMLPFWTSFLLRVYAWMGL
                     LGHNGIVNNLLIKMGIISEPLDLFYNAFSLNLVMVYAYLPFMILPLYTQLVKLDNRLL
                     EAASDLGAGPVKSFLTITLPLSKTGIIAGSMLVFVPAVGEFVIPELVGGSENLMIGKV
                     LWQAFFDQNNWPLASAVAVVMVALLVVPIALFQHYENRELEEGAK"
     gene            complement(3301..4425)
                     /gene="potA"
                     /locus_tag="ACFM6C_000199"
     CDS             complement(3301..4425)
                     /gene="potA"
                     /locus_tag="ACFM6C_000199"
                     /EC_number="7.6.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015417 - ABC-type polyamine transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015846 - polyamine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter ATP-binding protein"
                     /protein_id="HFC6157720.1"
                     /translation="MTATTASSAKPYLKIQGLVKKFGDNYAVDNIDLDIYQHEIFALL
                     GSSGSGKSTLLRMLAGMESPNQGKIILDGQDITKLAPYDRPINMMFQSYALFPHMTVE
                     QNIAFGLKQDKMPKGEIAARVEEMLRLVQMTKFAKRKPHQLSGGQQQRIALARSLAKR
                     PKILLLDEPLGALDKKLRQQTQLELVNTLEQVGVTCIMVTHDQEEAMTMATRIAIMSD
                     GQLQQVGTPSDVYDYPNSRFTAEFIGETNIFDGVVIEDHADYAVIECEGLENHVRIDH
                     GLGGPSEQDLWVSIRPEDIDLYKEKPEYLGDYNWAKGTVKEIAYLGSFAIYHIKLGNG
                     RVVKSQVPAPYWYVRNITPPTWDETVYISWPENQPTPLFR"
     gene            complement(4620..4727)
                     /locus_tag="ACFM6C_000200"
                     /pseudo
     CDS             complement(4620..4727)
                     /locus_tag="ACFM6C_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(4806..5075)
                     /gene="rpsO"
                     /locus_tag="ACFM6C_000201"
     CDS             complement(4806..5075)
                     /gene="rpsO"
                     /locus_tag="ACFM6C_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019958878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HFC6157721.1"
                     /translation="MALTVEQKAQIVKDFQRKEGDTGSSEVQVALLTFRINDLTPHFK
                     ANPKDHHSRRGLLKMVSQRRRLLAYLRRTQPDTYRALITRLGLRK"
     gene            complement(5298..6233)
                     /gene="secF"
                     /locus_tag="ACFM6C_000202"
     CDS             complement(5298..6233)
                     /gene="secF"
                     /locus_tag="ACFM6C_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HFC6157722.1"
                     /translation="MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTRGLNFSVE
                     FTGGTVMEVQYQQGADVNKMRERLDTLKIGDVQVQALGTNKHIMIRLPNKEGVTSAQL
                     SNQVMDLLKKDSPDVTLRQVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRF
                     AVSAIIANMHDIVIILGCFAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRK
                     PAMRGHAVPEVIDNAITATMSRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVF
                     GIYSSVLVASPLLLMFGLSRDNIGKEPKKKEEIVV"
     gene            complement(6237..8090)
                     /gene="secD"
                     /locus_tag="ACFM6C_000203"
     CDS             complement(6237..8090)
                     /gene="secD"
                     /locus_tag="ACFM6C_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HFC6157723.1"
                     /translation="MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAII
                     INEQTQSKVDAALKNAGIQTDGMFVVDNSLKVRFKDTETQLKARDIIENTLGEGYITA
                     LNLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRR
                     EKIRSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEATLNSDGSNIVLTLSEEAVN
                     KVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTAT
                     LELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQPSF
                     DQMGAPAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITGGR
                     VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI
                     VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNV
                     LINERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAV
                     VHCLGILTSMYSSVVVFRALVNLWYGRRRKLQNISIGSVWKPKAEMAGGKE"
     gene            complement(8302..8568)
                     /gene="yajC"
                     /locus_tag="ACFM6C_000204"
     CDS             complement(8302..8568)
                     /gene="yajC"
                     /locus_tag="ACFM6C_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HFC6157724.1"
                     /translation="MNQAVAQFAPLVLIMVVFYFLIMRPQQKKFKAHQAMLAALKVGD
                     KVVLAAGFKGKVTRVGEQFFTVDIGQGTKIEVEVERNAIAAKVD"
     gene            8696..9769
                     /locus_tag="ACFM6C_000205"
     CDS             8696..9769
                     /locus_tag="ACFM6C_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase family protein"
                     /protein_id="HFC6157725.1"
                     /translation="MSLTRLILKFYALLRLFLGKNARTAWISHPACTGHEPGANHPDS
                     PDRILCIEQALRRAGIWQHLQTIEAEEISDTRLALVHSSKYLNRLESCLPQKGKIFRL
                     DNDTAISTGSLSAAHFAAGSAVQAVDMVMNRKAWHAFCAARPPGHHAGSGKAGGFCLL
                     NNVAAGVMHAIAEYRLKRIAVIDFDVHYGDGTAEIFKDDPRILFFNLFETDLFPFPEN
                     NDMPDGGNMVHLPLPPGTGSRTFREAVRRQWLPRLAAFKPELVLLSAGFDAHRLDKSG
                     RLNLHEADFGWLTHKIIQTASGCPGKVVSVLEGGYTLESLSKSAAEHIRVLAGLGKSE
                     TAAAYQAELDHNREHVPPDPNPA"
     gene            10024..11088
                     /locus_tag="ACFM6C_000206"
     CDS             10024..11088
                     /locus_tag="ACFM6C_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-butanediol dehydrogenase"
                     /protein_id="HFC6157726.1"
                     /translation="MKAARFYDKGDIRIEDIPEPTVAPGTVGINVVWCGICGTDLHEF
                     MEGPIFIPPCGHPHPISGESAPVTMGHEFSGVVYAVGEDVDDIKVGQHVVVEPYIVHD
                     DVPTGPGSNYHLSKDMNFIGLGGCGGGLSEKIAVKRRWVHPISDKIPLDQAALIEPLS
                     VGHHAYVRSGAKAGDVALVGGAGPIGLLLAAVLKAKGIKVIITELSKARKDKARESGV
                     ADYILDPSEVDVVEEVKKLTNGEGVDVAFECTSVNKVLDTLVEACKPAANLVIVSIWS
                     HPATVNVHSVVMKELDVRGTIAYCNDHAETIKLVEEGKINLEPFITQRIKLDELVSEG
                     FERLIHNNESAVKIIVSPNL"
     gene            11229..11552
                     /locus_tag="ACFM6C_000207"
     CDS             11229..11552
                     /locus_tag="ACFM6C_000207"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-ATP diphosphatase"
                     /protein_id="HFC6157727.1"
                     /translation="MGDSVLSAIQQTITQRKSANPSESYVAQLLHKGEDKILKKVIEE
                     AGEVLMASKDKNPSHLVYEVADLWFHTMILLTHHDLKAEDVLDELARRQGLSGLAEKA
                     ARTES"
     gene            11624..11947
                     /locus_tag="ACFM6C_000208"
     CDS             11624..11947
                     /locus_tag="ACFM6C_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HFC6157728.1"
                     /translation="MDNCIFCKIAAKDILAQTVYEDGEMVCFKDINPAAPVHLLLIPK
                     VHFDSLAHAAPEHQPLLGKMMLKVPEIAKAAGLADGFKTLINTGKGGGQEVFHLHIHI
                     MGTPV"
     gene            11994..12197
                     /gene="tatA"
                     /locus_tag="ACFM6C_000209"
     CDS             11994..12197
                     /gene="tatA"
                     /locus_tag="ACFM6C_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0043953 - protein transport by the Tat
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HFC6157729.1"
                     /translation="MGSFSLTHWIIVLIIVVLIFGTKKLRNVGKDLGGAVHDFKQGLN
                     EGTDGKEAQKDDVIEHKKDEDKA"
     gene            12201..12887
                     /gene="tatB"
                     /locus_tag="ACFM6C_000210"
     CDS             12201..12887
                     /gene="tatB"
                     /locus_tag="ACFM6C_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008320 - protein transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase protein
                     TatB"
                     /protein_id="HFC6157730.1"
                     /translation="MFDFGLGELVFVGIIALIVLGPERLPEAARTAGRLIGRLQRFVG
                     SVKQEFDTQIELEELRKAKQEFEAAAAQVRDSLKETGTDMQNSLHDISDGLKPWEKLP
                     EQRTPADFGVDENGNPLPDAANTVSDGISDVMPSERSYASTETLGDSGQTGSTAEPAE
                     TDQDRAWREYLTASAAAPVVQTVEVSYIDTAVETPVPHTTSLRKQAISRKRDLRPKSR
                     AKPKLRVRKS"
     gene            12901..13671
                     /gene="tatC"
                     /locus_tag="ACFM6C_000211"
     CDS             12901..13671
                     /gene="tatC"
                     /locus_tag="ACFM6C_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HFC6157731.1"
                     /translation="MSETQNEQPVQPLVEHLIELRRRLMWTVVGILVCFFGLMPFAQQ
                     LYTFIADPLMANLPKDTSMIATDVIAPFFVPVKVTLMAAFLISLPHTLYQIWAFVAPA
                     LYQNEKRLITPLVLSSVSLFFIGMAFAYFLVFPVIFKFLASVTPVGVNMATDIDKYLS
                     FILGMFVAFGTTFEVPIVVILLTKISVVTTGQLKRARPYVIVGAFVIAAIITPPDVIS
                     QTLLAIPLILLYEAGIWFGRFFTPRSEQDGDIQPPATT"
     gene            13724..14329
                     /locus_tag="ACFM6C_000212"
     CDS             13724..14329
                     /locus_tag="ACFM6C_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030428 - cell septum [Evidence IEA];
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA];
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family nucleotide pyrophosphatase"
                     /protein_id="HFC6157732.1"
                     /translation="MNALYLGSNSPRRMEILTQLGYQVVKLPADINETVRQNEDPARY
                     VQRMAEEKNRTALTLFCETNGTMPDFPLITADTCVVSDGIILGKPHSQAEAIEFLNRL
                     SGKQHTVLTAVCIHYRGNAENRVQTNRVVFKPLSSEEISAYVQSGEPMDKAGAYAVQG
                     IGSIFIQSIEGSFSGIMGLPVYETVSMLQDLGYRTPPFIRA"
     gene            14345..14698
                     /locus_tag="ACFM6C_000213"
     CDS             14345..14698
                     /locus_tag="ACFM6C_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2069 domain-containing protein"
                     /protein_id="HFC6157733.1"
                     /translation="MNRQTAYLLASFSLIALIILSLSWELWIAPLRPGGSWLALKALP
                     LCLPLSGILKKKIYTYQYSSMLVLIYFAEAVMRLFDAYPAEQICAALSAVFSIIFFIS
                     CLSFVKQYKETNNAR"
     gene            14688..16502
                     /locus_tag="ACFM6C_000214"
     CDS             14688..16502
                     /locus_tag="ACFM6C_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Wzy polymerase domain-containing protein"
                     /protein_id="HFC6157734.1"
                     /translation="MPAETTVSGAHPAAKLPIYILPCFLWIGIVPFTFALKLKPSPDF
                     YHDAAAAAGLIVLLFLTAGKKLFDIKIPAISFLLFAMAAFWYLQARLMNLIYPGMNDI
                     VSWIFILLAVSAWACRSLVAHFGQERIVTLFAWSLLIGSLLQSCIVVIQFAGWEDTPL
                     FQNIIVYSGQGVIGHIGQRNNLGHYLMWGILASAYLNGQRKIPAALGVICLIMQTAVL
                     GLVNSRTILTYIAAIALILPFWYFRSDKSNRRTMLGIAAAVFLTALFQFSMNTILETF
                     TGIRYETAVERVANGGFTDLPRQIEWNKALAAFQSAPIFGHGWNSFAQQTFLINAEQH
                     NIYDNLLSNLFTHSHNIVLQLLAEMGISGTLLVAATLLTGIAGLLKRPLTPASLFLIC
                     TLAVSMCHSMLEYPLWYVYFLIPFGLMLFLSPAEASDGIAFKKAANLGILTASAAIFA
                     GLLHLDWTYTRLVNAFSPATDDSAKTLNRKINELRYISANSPMLSFYADFSLVNFALP
                     EYPETQTWAEEATLKSLKYRPHSATYRIALYLMRQGKVAEAKQWMRATQSYYPYLMPR
                     YADEIRKLPVWAPLLPELLKDCKAFAAAPGHPEAKPCK"
     gene            16692..17369
                     /gene="misR"
                     /locus_tag="ACFM6C_000215"
     CDS             16692..17369
                     /gene="misR"
                     /locus_tag="ACFM6C_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003684348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator MisR"
                     /protein_id="HFC6157735.1"
                     /translation="MSRVLLVDDDALLTELLTEYLSAEGLNVRSVPDGEAGVQEILSG
                     QYDVVVLDSMMPKMNGLDVLKNVRARSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKP
                     CTPRELLARINAILRRAQHSGEQNNAPNSISVSDVVLYPAKRQASVKDMPLELTSTEF
                     NLLEVLMRHAGQVVSKETLSVEALDRKLAKFDRSIDVHISSIRHKLGDASLIQTVRGL
                     GYLFVKN"
     gene            17383..18789
                     /gene="misS"
                     /locus_tag="ACFM6C_000216"
     CDS             17383..18789
                     /gene="misS"
                     /locus_tag="ACFM6C_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     MisS"
                     /protein_id="HFC6157736.1"
                     /translation="MKLFQRIFATFCAVIVCAIFVASFSFWLVQNTLAENQFNQRRTI
                     ETTLMGSIISAFRARGDAGAREILTEWKDSPVSSGVYVIQGDEKKDILNRYIDSYTIE
                     RARLFAAGHPHSNLVHIEYDRFGEEYLFFTKDWDKLQARRLPSPLLIPGLPLAPIWHE
                     LIILSFIIIVGLLMAYILAGNIAKPIRILGNGMDRVANGELETRISQQVDDRDDELSH
                     LAIQFDKMVEKLEKLVAKERHLLHHVSHEMRSPLARMQAIVGLIQAQPQKQEQYLKRL
                     EGELTRMDTLAGELLTLSRLETSNMALEKESLKLLPFLGNLVEDNQSIAQKNGQTVTL
                     SVDGKIPENTTILANESYLYRAFDNVIRNAVNYSPEGSTILINIGQDHKHWIIDVTDN
                     GPGVDEMQLPHIFTAFYRADSSANKPGTGLGLALTQHIIEQHCGKIIAENIKPNGLRM
                     RFILPKKKTGSKTEKSAN"
     gene            18907..21333
                     /locus_tag="ACFM6C_000217"
     CDS             18907..21333
                     /locus_tag="ACFM6C_000217"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFC6157737.1"
                     /translation="MSAQTDPGYFFMPNHIILIGASERPYSLGERVLSNLLSTPFQGK
                     ITPVNPRHHTIAGLPAYTSLNKIPGNADLIIAVTLPDSYDTLFKTCRKKQLRHIILIQ
                     DWDSLSAAELHTAETAIRKHHGNGLNITACTTAGIQLPSLGLNISTQDGYAAGHTAIL
                     TGNAAVSRQIDNILNKLRQGTSRHISLHPGISPITSADWLNRFGHSLHTKTAVLHHNP
                     EEDQRKLFSAIRQFTRHTPLILHITCRTTETDRAVLHCLARHCNFLISFNADDLEAAL
                     RAQLSDLPPLSRLDILSDTPAEWLNAHAPKTLALHFPNLPHHIRNGHLTGTPTPSICH
                     DIASRQLARPDTQAVLTILSPSGHEDYKKTARALIRLSEQTAKPLLVSSPFSDGITHF
                     DTPTQAIRTLSYRNTAAALKQAQLDIAPPQPCRLKTPQPQNIKKALAAANPSLLAEAL
                     HLPPYRHTTHNAVQFQFDSHPLYGDILTARCNGQTTAVLPPFTTLDSRHLARFAELDG
                     TQTLDQFLHTLTIIPEYRQHILGITLNLNGGQYSSDFILKTPETHDTPKRKNTGKAAQ
                     TLEHAAAKMQSAAAYLKHKNPTAAEFLRHTSEAAAELLGSKTETGAAVPNVLAPYPAA
                     YPKTLSLRNNTTVTITPILPEDAEAKQQFVRSLGPEARYTRFMTHTNELPAATLARLC
                     NPDYHCEAAWTAKDADSNIVAVVRHSRLNRNECEFGITLAEHMRGSGLAQKMMELIIQ
                     TAAQQGYRTMSADILKTNTPMIKLAEKSGFTLKESDTEKNLYRAYLNLAADKTTEKTN
                     KNLRTDHKIT"
     gene            21378..21623
                     /gene="rpsP"
                     /locus_tag="ACFM6C_000218"
     CDS             21378..21623
                     /gene="rpsP"
                     /locus_tag="ACFM6C_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HFC6157738.1"
                     /translation="MVVIRLARGGSKHRPFYNVIVTDSRSRRDGRFIERVGFYNPVAN
                     EKQERVRLNADRLNHWIAQGAQVSDSVAKLIKEQKAA"
     gene            21639..22148
                     /gene="rimM"
                     /locus_tag="ACFM6C_000219"
     CDS             21639..22148
                     /gene="rimM"
                     /locus_tag="ACFM6C_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003748672.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HFC6157739.1"
                     /translation="MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLV
                     KDGKTISVTLEAGKVVNGELQVKFEGINDRDLAFSLRGYTIEIPREAFAPTEEDEYYW
                     TDLVGMTVVNKDHTVLGKVSNLMETGANDVLMIDGEHGQILIPFVSQYIETVDTGSKI
                     ITADWGLDY"
     gene            22148..22897
                     /gene="trmD"
                     /locus_tag="ACFM6C_000220"
     CDS             22148..22897
                     /gene="trmD"
                     /locus_tag="ACFM6C_000220"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HFC6157740.1"
                     /translation="MLIQAVTIFPEMFDSITRYGVTGRANRQGIWQFEAVNPRKFADN
                     RLGYIDDRPFGGGPGMIMMAPPLHAAIEHAKAQSSQAAKVIYLSPQGKPLTHPKAAEL
                     AELPHLILLCGRYEGIDERLLQTSVDEEISIGDFVVSGGELPAMMLMDAVLRLVPGVL
                     GDMQSAEQDSFSSGILDCPHYTKPLEFQGMAVPEVLRSGNHGLIAEWRLEQSLRRTLE
                     RRPDLLEKRVLIPKESRLLETIRQEQREIQS"
     gene            22913..23278
                     /gene="rplS"
                     /locus_tag="ACFM6C_000221"
     CDS             22913..23278
                     /gene="rplS"
                     /locus_tag="ACFM6C_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003679470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HFC6157741.1"
                     /translation="MNLIQQLEQEEIARLNKEIPEFAPGDTVVVSVRVVEGTRSRLQA
                     YEGVVIARRNRGLNSNFIVRKISSGEGVERTFQLYSPTVEKIEVKRRGDVRRAKLYYL
                     RGLTGKAARIKEKLPARKG"
     gene            23599..24324
                     /locus_tag="ACFM6C_000222"
     CDS             23599..24324
                     /locus_tag="ACFM6C_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010361246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HFC6157742.1"
                     /translation="MSIIVENLTVSYRRRPAVHHVDITFEEHSMWAVFGPNGAGKSTF
                     LKSLMGLQPIDTGSIRLDGLTRQNIAYLPQQSDIDRSQPMTVFDLAAMGLWYEIGFFR
                     GINTVQKQRVHEALERVGMRQFARRQIAHLSNGQFQRVLFARMLVQNAKFLLLDEPFN
                     AVDARTTYELLDVLQKCHCNGHAIIAVLHDYEQVRAYFPNTLLLAREKIAAGATETIL
                     TEPYLAQANAKMQQQESPDWCAS"
     gene            24359..25234
                     /locus_tag="ACFM6C_000223"
     CDS             24359..25234
                     /locus_tag="ACFM6C_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HFC6157743.1"
                     /translation="MNLYDLLLAPFTEFDFMRYALASVFCLSLSAAPVGVFLVMRRMS
                     LIGDALSHAVLPGAAVGYMFAGLSLPAMGLGGVAAGMLMALLAGLVSRFTTLKEDANF
                     AAFYLSSLAIGVVLVSKNGSSVDLLHLLFGSVLAVDIPALQLIAAVSTLTLLTLAVIY
                     RPLVLESIDPLFLKSVGGKGGLWHVLFLVLVVMNLVSGFQALGTLMSVGLMMLPAITA
                     RLWAKHMGALILLSVLTALLCGLSGLLISYHIEIPSGPAIILCCSVLYLFSVILGKEG
                     GILTKWLKNHRHHTT"
     gene            25311..26231
                     /locus_tag="ACFM6C_000224"
     CDS             25311..26231
                     /locus_tag="ACFM6C_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003696733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HFC6157744.1"
                     /translation="MKHLKLTLIAALLTTAATAAPLPVVTSFSILGDVAKQIGGERVS
                     IQSLVGANQDTHAYHMTSGDIKKIRSAKLVLLNGLGLEAADIQRAVKQSKVSYAEATK
                     GIQPLKAEEESGHHHDHDHDHDHEGHHHDHGEYDPHVWNDPVLMSAYAQNVAEALIKA
                     DPEGKVYYQQRLGNYQMQLKKLHSDAQAAFNAVPAAKRKVLTGHDAFSYMGKRYHIEF
                     IAPQGVSSEAEPSAKQVAAIIRQIKREGIKAVFTENIKDTRMVDRIAKETGVNVSGKL
                     YSDALGSAPADTYIGMYRHNIKALTNAMKQ"
BASE COUNT         6783 a         7885 c         6044 g         5564 t
ORIGIN      
        1 gcctgcgacg cttaacggct gtctttccac tgataatatt tcgagccgag gaaagaaccg
       61 agtttgcgca aaaacggttg caggataata ttcggctggc gcaaccgctc aaacggcttc
      121 agacggcatt cgtcccctaa aattgcttcg gcaaccgcca gacctgcaat gcctgttatc
      181 gccatcccgt gtccggaata accttgtgca taaaaaacat ttgcggccaa acgtccgaaa
      241 tgcgggacaa ggttggcggt aatgtcgcac tccccgcccc acgaatattc gattttgaca
      301 tcgtcaagct gcggaaaaac tttaagcata tcttggcgga caagctcggt catacgcgca
      361 ggattgtcga taaactcgtt atccttaccg ccgaaaagca gtctgccgtc cgcgctgagg
      421 cggtaataat ccaaaatatg gcggttgtcg catactgcca tattgttacg gataagccct
      481 tttgcgcgcg cccccaaggg ttcggtcgca ataataaagg tgctaacggc aatcgccttg
      541 cgttccaaag gctggaatat cgggttcaaa cctgcatagg tattgacggc atacaccaga
      601 tttttgcatt cgacgctgcc ttcgggcgtg taaaccagcc aaccgttttg atgcggttcg
      661 atgcgcgtca tcggggactg ctcgaaaatc tgcgcgccgg cttcggcagc ggcaccggca
      721 acacccaacg tgtaattgag cggatgcagg tgtccggata aggggtcgaa ttgtgcccct
      781 tggtacatat cgctgtcaag ctgctgtttc aactcggctt tatcccaaag ttgataatga
      841 ctcgcaccgt aatgccgttg ggcgtgttca tgccactgct gcaactcttc ccaatgctgc
      901 ggacggacgg caaccgtggc ataaccgcgc tgccaatcgc aatcaatggc atgtttgcgg
      961 acgcgttcgt ccaccagttc gaccgcctgc aaagactgtt gccaaaacca ttgcgcctgc
     1021 tccaagccga cctgtttttc aatttccccc ataccgcagg cgtaatcgct gataacctgc
     1081 ccgccactcc gtcccgacgc gccgaaaccg atacgcgcgg cttccaacac aaccgtttca
     1141 tgtccctgct ccgccaaggg caatgcagtg cacaaaccac tcaatccgcc gccgatgata
     1201 caggtatcgg ttttcagacg gcattgaagt ttcggataaa cagtatgagg attaaccgaa
     1261 ctgaaataat aagaaggcag atattcttga aaatcagggc gaatcattgt gtttgcttta
     1321 tcaggtgtat tttcggacgg aatgatacag gctgtcgggc catatcgtcc aaacagaaaa
     1381 tcggttgaag aaaacaggct gacccagtca tgcggtcagc ctgccttatt aattaatttg
     1441 ctttctcggc agccaatttt tcttggcggt aggcttctgc cgcttctcgg tcacgcttgg
     1501 ttgcctgcct catcatccaa taattgacga tgatgaccaa tgttccgatg atgccgatta
     1561 ggatggtcgc caagacattc atctgcggat cgagacccaa cttgattttg gagaaaatca
     1621 cctgcggcaa tgtggatgaa ccggggccgg agaggaatga ggtaatcacc aaatcatcca
     1681 aagacagggt aatgccgagc agaaagcctg aagcgatggc aggggcaatc aaaggcaaag
     1741 tgatgacaaa aaagattttc agcggacgcg cgcccaaatc cattgcggct tcttcgagcg
     1801 actggtcaag ctcaaccaga cgcgaacgga taacaacggt aatgtacgcc atacacagcg
     1861 tcgtatgtcc gaggaagatg gtgaaaaagc cacgatcgaa gtagagatgt tgtaaccatt
     1921 cgctgccctg caaaaatatc tgtacctgaa taatcagcag cagcatagac agaccggtaa
     1981 tcacgtcggg catcaccata ggtgcggaaa tcataccggc gaacaaggta ctgccgcgaa
     2041 aacgtttaat ccgcgccatc gcatagcctg ccagcgtgcc caaaacgacg gcagcaagcg
     2101 aagacacaac ggcaatccgc agcgacagcc aagcggcttc caagatggtg tcgttttcca
     2161 gcaatgcgcc gtaccacttg gtcgaaaagc cgccccaaac ggttaccagc ttggattcgt
     2221 taaacgaata gatgaccaaa acaaccagcg ggatatacag aaacgccagc gacagtgcca
     2281 acatcagttt caagaaccaa gataatttgg atttctgcat tatttggctc cttcttccaa
     2341 ttcgcggttt tcataatgct gaaacagggc aatcggcacg accagcagcg cgaccatcac
     2401 gacggcgacg gcggaagcca gcggccagtt gttttgatcg aagaacgcct gccacaagac
     2461 tttaccaatc atcaggtttt ccgaaccgcc gaccagctcg ggaatgacga actcgccgac
     2521 agcagggacg aaaaccagca tggagcctgc aataatgccg gttttcgaca aaggcagggt
     2581 aatcgtcaag aacgatttga ccggccccgc gcccaaatcg gaagccgctt caagcaggcg
     2641 gttgtcgagt ttcaccagtt gcgtgtatag cggcagaatc ataaacggca gataggcgta
     2701 aaccatcacc aaattgagcg aaaaggcatt gtagaacaaa tccaaaggct cgctgataat
     2761 acccatttta atcaacaggt tgtttacaat gccgttatgc ccgagcagac ccatccacgc
     2821 atagacgcgc aacaggaacg atgtccaaaa gggcagcata atggcaagca gcaaaccatt
     2881 gcggacagaa ggattggcac gagaaatcgc ataggcggtc ggataaccga ccaacagaca
     2941 aattaccgtc gtagtcagcg cagtcttaat tgaagaccaa taagtcatca gatagatatt
     3001 gctgttttca ctgtcgccga acgggttaag ggtatgccaa aaattttgga aaatatcggc
     3061 atagttttga taactgatgg cgatattcag acgacctaaa tcttcgtcga tgctggtcag
     3121 cggcgtaaac ggcggaatgg cgatttcttg ttcggcaaag ctgattttca gcacgatggc
     3181 gaacggaatc agaaacagca ccaaaagcca aatatacggt acggcaatca ccgcacgctg
     3241 ccccggacgg cggaacagtt tgtttttcag tttattaagg ttcattgcat tccccttaaa
     3301 tcaacggaac aacggagtcg gttggttttc cggccagctg atatagacgg tttcgtccca
     3361 agtcggcggt gtaatgttgc gcacatacca gtaaggggcg gggacttggc ttttgacgac
     3421 gcgcccgttg ccgagcttga tatggtaaat ggcgaagctg cccaaatagg cgatttcttt
     3481 taccgtgcct ttcgcccagt tgtagtcgcc caaatattcg ggtttttctt tatataaatc
     3541 aatatcctct ggtcgaatac taacccaaag gtcctgctcg ctcggaccac ccaaaccgtg
     3601 atcgatgcgg acgtggtttt ccaaaccttc gcattcgata acggcatagt cggcatgatc
     3661 ttcaatcacc acaccgtcaa agatgttggt ttcgccgata aactcggcag tgaagcggct
     3721 gttgggatag tcgtacacgt cgctgggtgt gccgacttgc tgcaactgac cgtcagacat
     3781 aatggcgatg cgggtcgcca tcgtcatcgc ctcttcttgg tcgtgcgtaa ccataataca
     3841 ggttacgccg acttgttcca gcgtattgac caactcaagc tgggtttgtt ggcgcagttt
     3901 tttgtccaat gcaccgaggg gctcatccag cagtagaatt ttcggacgtt ttgccagact
     3961 gcgtgccaaa gcaatgcgct gctgctgacc gccggacaat tggtgcggtt tgcgtttagc
     4021 aaatttggtc atctgaacca ggcggagcat ttcttcgacg cgcgcggcga tttcgccttt
     4081 aggcattttg tcctgtttca gaccgaaggc aatgttttgt tctacggtca tatgcggaaa
     4141 aagcgcgtaa ctttggaaca tcatattgat ggggcgatca tagggtgcaa gtttggtaat
     4201 atcctgacca tcaaggataa tttttccctg attgggactt tccatacccg ccagcatacg
     4261 cagcagtgta gattttccgc tgccggaact gcccaaaagg gcgaagattt cgtgttgata
     4321 aatgtccaag tcgatgttat cgacagcgta attgtcacca aactttttca ccaaaccttg
     4381 gattttgaga taaggtttgg ctgaagacgc agtggttgcg gtcataatgg caatactcca
     4441 ataaaaagac gagtaccggc aaaacggatt ttcgaatggg tgataaaaag ctgtttgatt
     4501 gctggcggga gttaaacgtt tgatgccgtc tgaaactctt gtaaagcgca cgggcagcat
     4561 gaaatggaac aagattccaa agaactttat attatattag tttatgcggt tttcgggcaa
     4621 tatagtggat taaatttaaa ccagtacagc gttgccttgc cttgccgtac tatttgtact
     4681 gtctgcggct tcgtcgcctt gtcctgattt aaatttaatc cactataaat atggatttga
     4741 gcttgtcgga aagcaacaga aaagaaaaca ccgcccattt ttctgggcgg tgtcggaaag
     4801 cgtaattatt tacgcagacc caagcgggta atcaacgcgc gatacgtatc gggctgggta
     4861 cggcgcaagt aggccagcag gcggcggcgt tggctgacca ttttcaacag gccgcgacgg
     4921 ctgtggtggt ctttggggtt ggctttgaag tggggggtca ggtcgttgat gcggaaagtc
     4981 aacagagcga cttgtacttc ggaagagccg gtgtcgcctt ctttgcgttg gaaatcttta
     5041 acgatttgtg ctttttgttc tacggtcagt gccataatgg aaactccaaa aatataagaa
     5101 tccccatagg gattcagaca agtttgccaa gcctgaagac aacggcaaac tccctatgcc
     5161 caagatagga caacgtggca ttatgacaca attcccgcat ttctgcacaa tattttaaga
     5221 ccgtggaagt aaccgttaaa aatgccgtct gaagcattgt ctgcttgaga cggcaatgtt
     5281 cagacggcat atgcgcttca aaccacgatt tcttctttct tcttcggttc tttaccgata
     5341 ttgtcgcggc tcaaaccgaa cattagcaga agcgggctgg caaccaatac ggaagaataa
     5401 atgccgaaca cgatgccgat ggtcaacgcc atagaaaagc cgtgcaaggc cgcaccgccg
     5461 aacaccagca tggatacgac catcgcctcg gtcgaaccgt gggtaatgat ggtgcggctc
     5521 atcgttgcgg taatcgcgtt gtcgatgact tccggcacgg catgtccgcg catcgccggc
     5581 ttgcggaagt tttcacggat acggtcgaag acgacgacgg attcgttcac agaatagccc
     5641 aatacggcaa ggatacccgc caagacggtc agcgaaaatt cccattggaa gaaggcaaag
     5701 cagccgagaa taatcacgat gtcgtgcata ttggcgataa tggcagatac ggcaaaacgc
     5761 cattcaaaac gcatcgacag gtaaataatg atgccgataa cgacaaaacc taaagccatc
     5821 aatccattac ttaccaattc ctcaccaact tgcgggccga taaattcgac ttggcgcaaa
     5881 gtaacgtcgg gactgtcttt tttcagcaaa tccataacct gattggacaa ctgtgcggaa
     5941 gtaacacctt ctttgttcgg caggcggatc atgatgtgtt tgttcgtacc caatgcctga
     6001 acctgtacat cacctatttt cagcgtatcg aggcgttcgc gcatcttatt gacatccgca
     6061 ccctgctgat attggacttc cattaccgtg ccgccggtaa attcgacaga gaaattcaga
     6121 cctctggtaa ccaaaaagaa tacggcggca ataaaggtaa ccaacgaaat aaaggtcgtc
     6181 agtttgccgt agctcataaa cggaatatcg cgtttgattt taaagagttc catagcttac
     6241 tccttgcctc ctgccatttc ggctttcggc ttccacaccg aaccgatgga aatattctgc
     6301 aatttgcgtc tgcgtccata ccacagattg accaacgcac ggaatacgac gacggacgaa
     6361 tacatcgaag tcagaatacc caaacagtgt acgaccgcaa aaccgcgtac cgggccggaa
     6421 ccgaatacca aaagcgcgat accggcaatc agcgaagtca ggttggaatc gacaatggtc
     6481 gcccatgcgt gttggaaacc gagattgatt gcctgctgcg gcggcacgcc ggcacgcaat
     6541 tcttcgcgga tacgttcgtt aatcaagacg ttggagtcga ttgccatacc caaagtcaac
     6601 gccagcgcgg ccatacccgg taacgtcaac gttgcctgca tggcagacaa aataccgatt
     6661 aggaacagta tgttggcact caatgcaatg gtagaaaaga aacccatcag acgatagtaa
     6721 accaccatga atgcagcaac gatggcaaaa ccccataaag tcgaatggaa gcctttttcg
     6781 atgttctcct tacccaaaga cggaccgatg gtacgttctt cgacaatctg catcggcgcg
     6841 gcaagagaac cggcacgcaa cagcaaagac gtatcattgg cttcggctgt cgtcatgctt
     6901 ccggaaattt ccacgcgtcc gccggtaatg gcagtacgga taaccggcgc ggttacaacc
     6961 tcggattttc cttggtcgat caaaaccatc gccatgcgtt tgccgacatt tgcggcagtc
     7021 agttcgccaa aaatgctgcc acccgcgctg tccaagctca gactgacagc aggtgcgccc
     7081 atttggtcga aactcggttg cgcatcgttg atgttgtcgc ccgtcagctc gacctgtttg
     7141 ctgattagca gagtttcggg acgatctccg ccgcttgaaa gcagctcata accgctcggc
     7201 acgttgcctt ccaatgcctc gcgcaacttg gcaggatcgt cctccaccat acgcaattcc
     7261 aaagtcgcgg tacggccgat gatgtctttt gccttggcag tatcctgaac gcccggaagc
     7321 tgcacgacga tacggtctgc acctgactgc tggatgacgg gttcggccac gcccaactcg
     7381 ttcacacggt tgtgcagggt agtgatgttc tgtttgaccg catcggaacg cactttattg
     7441 accgcctctt ccgaaagcgt caagacgata ttgctgccgt ctgaattcag cgttgcttca
     7501 ggaaacagct tgcgcaactg cggcagtgcc ttttgcacat cacctgcatc ctgcaaaggg
     7561 acggtcaggc tgtttccagc ctgacgcacc gtgccgctgc ggattttttc gcggcgcagt
     7621 tcgcggcgga tgtcgcccga ataacgttca aacgttttct gcatcgccgc tttcatatcg
     7681 acctgcatgg tgaaatgcac gccgccgcgc aagtccaaac ccaaaaacat cggattggct
     7741 ttgattttcg ccatccattc ggggctgtcc gccaacaggt tgagcgcggt aatataccct
     7801 tcgcccaaag tgttttcgat gatgtcgcgc gctttaagct gcgtttctgt gtctttgaaa
     7861 cgcactttca gtgaattgtc cacaacaaac atcccgtcgg tctgaatacc tgcgtttttc
     7921 agcgcggcat ccactttgga ttgagtctgt tcgttgatga tgatggcttg tcggttggtc
     7981 gatacctgca cggcgggtgt ttcgccgaat aggttgggca gcgaatacac tgcggcaacc
     8041 gcaatcgtga acacaatcag cagatatttc cataaaggat aacggttcat cattgttcct
     8101 taatggttgg aaccccaccc tttcggtggt gtcggaatcg ggctatttca gaagaggcaa
     8161 aaccccttcc cagccaggca agaccggaag gcggcatctt gaatatgccg ccctgcgtgt
     8221 cggaacatgg tcaagccttc ggttggaatt caaaacaaag tgccgcattc gggctttcca
     8281 gatgcggctt gtcggcacaa atcaatcgac ttttgcggca atcgcattgc gttctacttc
     8341 gacctcgatt tttgtaccct gtccgatatc cacggtaaaa aactgttcgc cgactctggt
     8401 taccttaccc ttgaaacctg ccgccaagac cactttgtcg ccgactttca aggcggcaag
     8461 cattgcctga tgcgctttga atttcttttg ctgcggacgc atgatcagga agtagaacac
     8521 caccataatc aacactaaag gagcaaattg tgcaacagct tgattcataa tttatccgtt
     8581 ctttctaata tggttgaaaa tcgagagggg tatataataa cataagaccg taaacaatat
     8641 atcgggtttg ccgtccgtac cgaccgtata ccgcagcctg cccgtccaca aacccatgtc
     8701 cttgacccgc ctaatcttga aattctatgc actattgcgc ctctttttgg gcaaaaacgc
     8761 ccgcaccgca tggatttcgc atcccgcctg cacagggcac gaacccggcg caaaccatcc
     8821 cgattcgccc gaccgcatcc tctgcatcga gcaggcattg cgccgcgccg gtatttggca
     8881 gcacctccaa accatagagg cggaagaaat cagcgatacg cgcctcgcgc ttgtccactc
     8941 gagcaaatat ctgaaccgtt tggaatcttg cctgccccaa aaaggcaaga ttttccgcct
     9001 ggataacgac actgcaatca gcacaggctc gctgtctgcc gcacactttg ccgccggttc
     9061 ggcagttcag gcagtcgaca tggtcatgaa ccgtaaagca tggcatgcct tttgcgccgc
     9121 ccgcccgccc ggacaccatg cgggcagcgg caaagccggc ggattctgcc tgctgaacaa
     9181 cgttgccgcc ggcgtcatgc atgccattgc cgaataccgc ctgaaacgca ttgccgtcat
     9241 cgatttcgat gtccactacg gcgacggtac ggcagaaata ttcaaagacg atccgcgcat
     9301 cctgtttttc aacctgtttg aaaccgacct ttttcctttc cccgaaaaca acgatatgcc
     9361 cgacggcggc aatatggtgc acctgccctt gccgccggga acgggcagcc gcacattccg
     9421 cgaagccgtc cgcagacagt ggctgccccg gcttgccgca ttcaaacccg aactggtgct
     9481 gctgtcggca ggattcgacg cacaccgtct ggacaaatcg ggcaggctca acctgcacga
     9541 ggcggatttc ggctggctga cacacaaaat tattcaaacg gcatcgggct gcccgggtaa
     9601 ggtcgtatcc gtgctggaag gcggttatac ccttgaatcc ttatcaaaat ccgccgccga
     9661 acacatccgc gtgctggcag gattgggaaa atccgaaacg gccgccgcct atcaggcgga
     9721 attggaccac aacagggaac acgtcccgcc cgatccgaac ccggcataag cacgccggac
     9781 cggccgtttt aaaacaaagg ctatgacggc ataggtatta tttaaatccg attcggtttg
     9841 caggcggtat cattatttga cctgaagcaa aacaagaaac ttttatctgc ttgaaatagg
     9901 ttttttgtag ccaaataaca cttgggcaga ttgaatccgg ctcttaccgg ccgccgtttc
     9961 catcccaacc gccgtccgac atttttcaga cggcattcct acttgaaaac aaggagcgtt
    10021 acaatgaaag cagcacgttt ttacgacaaa ggcgacatcc gcatcgaaga catccccgaa
    10081 ccgaccgtcg cccccggcac cgtcggcatc aatgttgtct ggtgcggcat ctgcggtacc
    10141 gacctgcacg aattcatgga aggcccgatt ttcattccgc cttgcggtca tccgcacccg
    10201 atttccggcg agtccgcacc cgtcacgatg ggacacgagt tctccggcgt ggtctatgcc
    10261 gtcggcgaag acgtggacga catcaaagtc ggccaacacg tcgtggtcga gccttacatc
    10321 gtacacgacg acgtaccgac cggcccgggc agcaactacc acctctctaa agacatgaac
    10381 ttcatcggct tgggcggctg cggaggtggc ttgtctgaaa aaatcgctgt caaacgccgt
    10441 tgggtgcatc cgatttccga caaaatcccg ttggatcaag ccgctttgat cgaaccgctg
    10501 tctgtcggac accacgccta tgtacgcagc ggcgcgaaag caggcgacgt cgcattggtc
    10561 ggcggcgcag gtccgatcgg tttgctgttg gctgccgtgt tgaaagccaa aggcatcaaa
    10621 gtcatcatca ccgagttgag taaagcacgc aaagacaaag cgcgcgaatc cggcgttgcc
    10681 gactacatcc tcgacccgtc cgaagtcgat gttgtcgaag aagtgaaaaa actgaccaac
    10741 ggcgaaggcg tggacgtggc attcgaatgt accagcgtga acaaagtgtt ggatactttg
    10801 gtcgaagcct gcaaacctgc cgccaatttg gttatcgtat ccatctggag ccaccctgca
    10861 accgtcaacg tccacagcgt cgtgatgaaa gaactggatg tgcgcggcac gattgcctac
    10921 tgtaacgacc acgccgaaac catcaaactg gtcgaagaag gcaaaatcaa cctcgagcct
    10981 ttcatcaccc agcgcatcaa gctggacgaa ctggtttccg aaggcttcga gcgtctaatc
    11041 cacaacaacg aatccgccgt taaaattatt gtgagtccaa acctgtaagc aaattacatt
    11101 tgcaacagca caaatgccgt ctgaaacgct cagacggcat tttccaacga agcgcaacag
    11161 gcgtattgcc cgagagcagc cgtttagcct atcattccga acaaacagaa acaaacagaa
    11221 ggaaaatcat gggagattcc gtactatccg ccatccaaca aaccatcacc cagcgaaaat
    11281 ctgccaatcc gtccgaatct tacgtcgcac agctcttgca taagggcgaa gacaaaatcc
    11341 taaaaaaagt gattgaagag gcgggcgaag tgttgatggc atccaaagac aaaaacccgt
    11401 cccacctggt ttacgaagtt gccgacttat ggtttcacac catgattctt ctgacacacc
    11461 acgacctgaa ggcggaagac gtattggacg aacttgcgcg ccgccaaggt ttgtcgggct
    11521 tggccgaaaa agccgctcgc acagaatctt gaatttatat taaaatccgc actttcccac
    11581 attcaatccg tctgaccgct tttcagacgg catcggagcc gttatggaca actgtatttt
    11641 ctgcaaaatc gccgccaaag acattctggc gcaaaccgtc tatgaagacg gcgaaatggt
    11701 ttgtttcaaa gacatcaacc ccgctgctcc ggttcatctg ctgctgattc ccaaagtcca
    11761 tttcgattcg ttggcacacg ccgcgcccga acatcagccc cttttgggaa aaatgatgct
    11821 gaaagttccc gaaatcgcca aagcggcagg actggcagac ggcttcaaaa ccctgatcaa
    11881 caccggaaaa ggcggcggac aagaggtctt ccacctgcat atacacatca tgggcacacc
    11941 cgtataaacc gttatttcac aatcaacccc taatacttac ttaaggatac atcatgggca
    12001 gtttttctct gacgcactgg attatcgtac tgattatcgt cgttttgata ttcggcacca
    12061 aaaaactgcg caacgtcggc aaagacctcg gcggtgcggt tcatgacttc aaacaggggc
    12121 tgaacgaagg cacagacggc aaagaagccc aaaaagacga tgtaatcgaa cacaaaaaag
    12181 acgaagacaa agcgtaattt atgtttgatt tcggtttggg cgagctggtt tttgtcggca
    12241 ttatcgccct gattgtcctc ggccccgaac gcctgcccga ggccgcccgc accgccggac
    12301 ggctcatcgg caggctgcaa cgctttgtcg gcagcgtcaa acaggaattt gacactcaaa
    12361 tcgaactgga agaactaagg aaggcaaagc aggaattcga agctgccgct gctcaggttc
    12421 gagacagcct caaagaaacc ggtacggata tgcagaacag tctgcacgat atttccgacg
    12481 gtctgaagcc ttgggaaaaa ctgcccgaac agcgcacgcc tgctgatttc ggtgtcgatg
    12541 aaaacggcaa tccccttccc gatgcggcaa acaccgtatc agacggcatt tccgacgtta
    12601 tgccgtccga acgttcctac gcttccaccg aaacccttgg ggacagcggg caaaccggca
    12661 gtacagccga acccgcggaa accgaccaag accgtgcatg gcgggaatac ctgactgctt
    12721 ctgccgccgc acccgtcgta cagaccgtcg aagtcagcta tatcgatacc gctgttgaaa
    12781 cccctgttcc gcataccact tcgctgcgta aacaggcaat aagccgcaaa cgcgatttgc
    12841 gtcccaaatc ccgcgccaaa cctaaattgc gcgtccgtaa atcataaaga gagcaatccg
    12901 gtgtccgaaa cacaaaacga acaacccgtc caaccgcttg tcgagcatct catcgagctg
    12961 cgccgccgcc tgatgtggac ggttgtcggc attctcgtct gctttttcgg cctaatgccg
    13021 tttgcccaac aactctatac ttttatcgcc gacccgctga tggcaaacct gcccaaagac
    13081 accagcatga ttgccaccga tgtcatcgca ccgtttttcg tgccggtcaa agttaccctg
    13141 atggcggcat ttttgatttc gctgccgcat acgctctacc aaatctgggc attcgtcgcg
    13201 cccgcactct accaaaacga aaaacgcctg attacgccgc tcgtcctctc cagcgtcagc
    13261 ctgtttttca tcggcatggc atttgcctac tttctggttt tccccgtcat tttcaaattc
    13321 cttgccagcg ttacccctgt cggtgtcaat atggcgacag acatcgacaa atacctatct
    13381 tttatcttag gcatgtttgt tgcgttcggc acaacgtttg aagttcccat cgtcgttatc
    13441 ctgttaacca aaatcagcgt ggtaacaacc ggacagctca aacgcgcccg cccctatgtg
    13501 attgtcggcg cgtttgtcat tgccgccatc atcacgccgc ccgatgtgat ttcacaaacc
    13561 ctgcttgcca ttccgctgat tctcttatac gaagcaggta tttggttcgg acgctttttc
    13621 acgccacgtt cagaacagga tggcgacata cagccgcctg caacaacctg acactatgcc
    13681 gtccgaacct ccgcctcata ccgcaacaga ttaaggaata cctttgaatg ccctctattt
    13741 aggttcaaac agcccgcgcc gaatggaaat cctgacacag ttgggctatc aggtcgtcaa
    13801 gctgcctgcc gacatcaatg aaacggtcag acagaacgaa gaccctgccc gttacgttca
    13861 aaggatggca gaagaaaaaa accgaaccgc cctgaccctc ttttgcgaaa ccaacggcac
    13921 aatgcccgat ttccccctga ttaccgccga cacctgcgtc gtttcagacg gcatcatatt
    13981 aggcaaaccc cactcccaag ccgaagcaat cgaattttta aaccgattgt ccggcaaaca
    14041 acataccgtc ctgactgccg tctgcattca ttatcgcggc aatgcggaaa accgcgtcca
    14101 aaccaaccgc gtcgttttca agcccctgag ttcggaagaa atttccgcct atgtccaaag
    14161 cggcgaaccg atggacaaag ccggtgccta cgccgtacaa ggcataggca gcatctttat
    14221 ccaatctatc gaaggcagct tcagcggcat tatggggctg cccgtttatg aaaccgtttc
    14281 gatgttgcag gatttgggat accgtacccc acccttcatc cgagcctaac ccgtaaagac
    14341 cgccgtgaac agacaaaccg cttacctcct tgcctctttc agcctgatcg cactgataat
    14401 cctgtccctt tcctgggaac tgtggattgc accgttgcgc ccgggcggct cgtggctcgc
    14461 gctcaaagcc ctccccctct gtctgccgct ttcaggcatc ttgaaaaaga aaatctatac
    14521 ttaccaatac agctccatgc tggttctgat ttactttgcc gaagccgtca tgcgcctgtt
    14581 cgacgcctat cccgcagaac agatttgcgc cgcgctttcc gcagtattca gcatcatctt
    14641 cttcatatcc tgcctgtcgt tcgtcaaaca atacaaggaa acaaacaatg cccgctgaaa
    14701 cgaccgtatc cggcgcgcac cccgccgcca aactgccgat ttacatcctg ccctgcttcc
    14761 tttggatagg catcgtcccc tttaccttcg cgctcaaact gaaaccgtcg cccgactttt
    14821 accacgatgc cgccgccgca gccggcctga ttgtcctgtt gttcctcacg gcaggaaaaa
    14881 aactgtttga tatcaaaatc cccgccatca gcttccttct gtttgcaatg gcggcgtttt
    14941 ggtatcttca ggcacgcctg atgaacctga tttaccccgg tatgaacgac atcgtctctt
    15001 ggattttcat cttgctcgcc gtcagcgcgt gggcctgccg gagcttggtc gcacacttcg
    15061 gacaagaacg catcgtgacc ctgtttgcct ggtcgctgct tatcggctcc ctgcttcaat
    15121 cctgcatcgt cgtcatccag tttgccggct gggaagacac ccctctgttt caaaacatca
    15181 tcgtttacag cgggcaaggc gtaatcggac acatcgggca gcgcaacaac ctcggacact
    15241 acctcatgtg gggcatactc gcctccgcct acctcaacgg acaacgaaaa atccccgccg
    15301 ccctcggcgt aatctgcctg attatgcaga ccgccgtttt aggtttggtc aactcgcgca
    15361 ccatcttgac ctacatagcc gccatcgccc tcatccttcc cttctggtat ttccgttcgg
    15421 acaaatccaa caggcggacg atgctcggca tagccgcagc cgtattcctt accgcgctgt
    15481 tccaattttc catgaacacc attctggaaa cctttactgg catccgctac gaaactgccg
    15541 tcgaacgcgt cgccaacggc ggtttcacag acttgccgcg ccaaatcgaa tggaataaag
    15601 cccttgccgc cttccagtcc gccccgatat tcgggcacgg ctggaacagt tttgcccaac
    15661 aaaccttcct catcaatgcc gaacagcaca acatatacga caacctcctc agcaacttgt
    15721 tcacccattc ccacaacatc gtcctccaac tccttgcaga gatgggaatc agcggcacgc
    15781 ttctggttgc cgcaaccctg ctgacgggca ttgccgggct gcttaaacgc cccctgaccc
    15841 ccgcatcgct tttcctaatc tgcacgcttg ccgtcagtat gtgccacagt atgctcgaat
    15901 atcctttgtg gtatgtctat ttcctcatcc ctttcggact gatgctcttc ctgtcccccg
    15961 cagaggcttc agacggcatc gccttcaaaa aagccgccaa tctcggcata ctgaccgcct
    16021 ccgccgccat attcgcagga ttgttgcact tggactggac atacacccgg ctggttaacg
    16081 ccttttcccc cgccactgac gacagtgcca aaaccctcaa ccggaaaatc aacgagttgc
    16141 gctatatttc cgcaaacagt ccgatgctgt ccttttatgc cgacttctcc ctcgtaaact
    16201 tcgccctgcc ggaatacccc gaaacccaga cttgggcgga agaagcaacc ctcaaatcac
    16261 taaaataccg cccccactcc gccacctacc gcatcgccct ctacctgatg cggcaaggca
    16321 aagttgcaga agcaaaacaa tggatgcggg cgacacagtc ctattacccc tacctgatgc
    16381 cccgatacgc cgacgaaatc cgcaaactgc ccgtatgggc gccgctgcta cccgaactgc
    16441 tcaaagactg caaagccttc gccgccgcgc ccggtcatcc ggaagcaaaa ccctgcaaat
    16501 gaccctcgcc ggcggatgcg gataccgccc gaaatgtaaa gctccatgca agacattgca
    16561 aaaaacagca aaccggtagg gaaatacgct atcaaaaaac attgcagccg tgttaagata
    16621 aaccgtcaaa caatcttttc acgccccgcc cgaaacaggg tcggggcata cccttacgaa
    16681 aaggaaacac catgagccgc gtattactcg tagatgacga tgccctgcta accgaactgc
    16741 tgaccgaata cctgagcgcc gaaggtctga acgtccgcag cgttcccgac ggggaagcag
    16801 gcgtacagga aatcctgagc gggcagtacg atgtagtcgt attggattcc atgatgccca
    16861 aaatgaacgg cttggatgtc ttgaaaaacg tacgcgcccg aagcaccgtc cccatcatca
    16921 tgctgaccgc caaaggcgac gacatcgacc gaatcatcgg cttggaaatg ggcgcggacg
    16981 actatgtccc caaaccctgc acaccacgcg aactcttggc acgcatcaat gccatcctgc
    17041 gccgcgcaca acacagcggc gaacagaaca acgcacccaa cagcatctcc gtcagcgatg
    17101 tcgtcctgta ccccgccaaa cgccaggcat ccgtcaaaga catgccgctc gaactgacca
    17161 gcaccgaatt caacctgctc gaagtcctga tgcgccatgc cggacaggta gtcagcaaag
    17221 aaaccctgtc cgtcgaagca ctcgaccgca agctggcaaa attcgaccgc agtatcgacg
    17281 tacacatctc cagcatccgc cacaagttgg gcgatgcctc tctgattcaa accgtacgcg
    17341 gcttgggcta cctgtttgtc aaaaactgaa ataaacagat aaatgaaact gttccaacgc
    17401 atcttcgcca cattttgcgc ggttatcgtc tgtgcaatct ttgtggcgag tttttctttc
    17461 tggctggtgc agaacaccct tgccgaaaac cagttcaacc aacgccgcac catcgaaacc
    17521 actttgatgg gcagcatcat ttccgcattc cgggcacgcg gggacgcggg cgcgcgcgaa
    17581 atcctgacgg aatggaaaga cagccccgtc tcatcgggcg tgtacgttat acagggcgac
    17641 gagaaaaaag atatcctgaa ccggtatatc gacagctata ccatcgaacg cgcccggctt
    17701 ttcgccgccg gacacccgca ttccaacctc gtccatatcg aatacgaccg cttcggcgaa
    17761 gaatacctgt tcttcaccaa agactgggac aaactccaag cccgccgcct gcccagcccc
    17821 ctgttgatcc ccggcctgcc gctcgccccg atttggcacg aactcatcat attgtccttc
    17881 atcatcatcg tcggactgct gatggcatat atcctcgccg gcaacattgc caaacccatc
    17941 agaatcttag gcaacggcat ggacagggtg gcaaacggag aacttgaaac ccgtatctcc
    18001 caacaggtcg acgaccgcga cgacgaattg tcccatcttg ccatccaatt cgacaaaatg
    18061 gtggaaaaac tcgaaaaact cgttgccaaa gaacgccacc tgctccatca cgtctcccat
    18121 gaaatgcgtt ctccccttgc gcgcatgcag gcaattgtcg gactgattca ggcgcagccc
    18181 caaaaacagg agcaatatct caaacggctg gaaggcgaac tgacccgcat ggatacgctg
    18241 gccggggaac tgttaaccct gtcccgtctc gaaacttcca atatggcttt ggaaaaagaa
    18301 agcctgaaac tcctgccctt cctgggcaac ctggtagaag acaatcaaag cattgcccag
    18361 aaaaacggac aaacggttac cctgtccgtc gacggaaaaa tccccgaaaa cacaaccatc
    18421 cttgccaacg aaagctacct gtaccgcgcc ttcgacaacg tcatccgcaa cgccgtcaac
    18481 tacagtcccg aaggcagcac catcctgatc aacatcggac aagaccacaa acactggata
    18541 atcgacgtta ccgacaacgg ccccggcgtg gacgaaatgc agctcccgca catcttcacc
    18601 gctttctacc gtgcagactc cagtgcgaac aaacccggaa caggactggg gcttgcattg
    18661 acccaacata ttattgaaca gcactgcgga aaaatcatcg ccgaaaacat caaaccgaac
    18721 ggtctgcgga tgcgcttcat cctgcccaag aaaaaaaccg gttccaaaac agaaaaaagt
    18781 gcgaactgac cataatgccg tctgaaccgg cttcagacgg cattgcacaa acagttaccc
    18841 caaaacaaac acacagcggg tgcatctcca acaatcacgc acataccgtc cgcaaaggaa
    18901 tatatcatgt cggcacaaac cgatccgggc tactttttca tgcccaacca cattattctg
    18961 ataggcgcga gcgaacgtcc gtacagcctg ggcgaacgcg tactcagcaa cctgctgagt
    19021 acgccctttc aaggaaaaat cacccccgta aacccgcgcc accacaccat agccgggctt
    19081 cccgcctaca ccagcctcaa caaaatcccc ggcaatgcag acctgattat tgccgttacc
    19141 ctacccgaca gttacgacac cctcttcaaa acctgccgca aaaagcagct ccgacacatc
    19201 atcctcatac aggactggga cagcctgtct gccgcagaac tgcacaccgc cgaaactgcc
    19261 atccgcaaac accacggcaa cggactcaac atcaccgcct gcaccaccgc aggcatccaa
    19321 ctgccctcac tcggactcaa catcagtacc caagacggat acgccgcagg ccataccgcc
    19381 atactgaccg gcaatgccgc cgtcagccgt caaatcgaca acatcctgaa caaactccgt
    19441 caaggcacat cccgccacat cagcctgcat cccggcatca gccccatcac atccgccgat
    19501 tggctcaacc gcttcggaca cagcctgcac accaaaaccg ccgtcctaca ccacaaccct
    19561 gaagaggatc agcgcaaact gttcagcgca atccgccaat ttacccgcca tacgccgctg
    19621 attctccaca tcacctgccg cacgacagaa accgaccgtg ccgtactgca ctgcctcgcc
    19681 cgacactgca acttcctcat cagtttcaac gccgacgacc tcgaagccgc actgcgcgcc
    19741 caactgtccg accttccacc cctgtcccga ctcgacatcc tgtccgacac gcctgccgaa
    19801 tggctgaacg cgcacgcgcc aaaaaccctc gccctccact ttcccaacct tccccatcac
    19861 atccgcaacg gacacctgac cggcacaccc acaccctcaa tctgccacga catcgcctca
    19921 cgtcagcttg cccgccccga cacccaagcc gtcctaacca tcctcagtcc ctccggacac
    19981 gaggattaca aaaaaacagc acgcgccctt atccgcctgt ccgaacagac cgccaaaccc
    20041 ctgctcgtca gcagcccctt ttcagacggc ataacacatt tcgacacccc cactcaggca
    20101 atccgcaccc tttcctaccg caacaccgcc gccgccctga aacaggcaca gctcgacatt
    20161 gcaccgccgc agccatgccg tctgaaaaca ccgcaacccc aaaacatcaa aaaagccctt
    20221 gcagcggcaa acccctccct gctcgccgaa gccctgcacc tcccccccta ccggcacacc
    20281 acccataacg ccgtacaatt ccaattcgac agccaccccc tctatggcga catcctgacc
    20341 gcacgctgca acggacaaac cactgccgta ctcccgccgt ttaccacgct cgacagccgc
    20401 caccttgccc gctttgccga actcgacggc acacaaaccc tcgaccagtt cctgcacaca
    20461 ctgaccatca ttcccgaata ccgccaacac attctcggca tcaccctcaa cctaaacggc
    20521 ggacaataca gcagcgattt catcttaaag acacccgaaa cacacgacac gcccaaacgc
    20581 aagaacacag gcaaagccgc ccaaaccctc gaacatgccg ccgcaaaaat gcagagtgcc
    20641 gccgcatacc tgaaacacaa aaacccgaca gccgccgaat ttctccgcca cacaagcgaa
    20701 gccgccgcag aactgctcgg cagcaaaacc gaaaccggag cagccgtacc caacgtactt
    20761 gccccctatc ccgcagcata ccccaaaaca ctgtccctaa gaaacaacac gaccgttacc
    20821 attaccccca ttttgcccga agacgcagaa gccaaacagc agttcgtccg cagcctcggt
    20881 cccgaagcac ggtacacacg cttcatgacc cacaccaacg aactgcccgc agccacgttg
    20941 gcacgcctgt gcaaccccga ttaccactgt gaagccgcat ggacggcaaa ggatgccgac
    21001 agcaacatcg tcgccgtcgt ccgccacagc cgcctgaatc gcaacgaatg cgaattcggc
    21061 atcacactgg cggaacatat gcgcggcagc ggactggcac agaaaatgat ggaactcatc
    21121 atccaaaccg ccgcacagca aggctaccgg actatgagtg ccgacattct caaaaccaat
    21181 acccccatga tcaaacttgc tgaaaaatca ggatttaccc tcaaggaatc ggacaccgaa
    21241 aaaaacctgt accgcgcata tctgaacctt gcggcagaca aaacaacaga aaaaacaaat
    21301 aaaaacttgc gcaccgacca caaaataacc taaaatcggc agtttccata tatccgattt
    21361 tctcaaaagg actcaaaatg gtagttatcc gtttggcacg cggcggctcg aaacaccgcc
    21421 ccttctacaa cgtcatcgtt actgactcac gcagccgccg cgacggccgc ttcatcgaac
    21481 gcgtaggctt ctacaacccc gtagccaacg aaaaacaaga gcgcgtccgc ctcaatgcag
    21541 accgcctgaa ccactggatt gcacaaggcg cgcaagtcag cgactccgtt gcaaaactga
    21601 ttaaagaaca aaaagccgcc taatccgcat ttgccgccat gacagacact caaaaccggg
    21661 tagccatggg ctacatcaaa ggcgtattcg gcataaaagg ctggttgaaa attgccgcca
    21721 acaccgaata ttccgacagc cttttggact accccgagtg gcatttggtc aaggacggca
    21781 aaaccatcag cgttaccctt gaagccggaa aagtcgtcaa cggcgaactc caagtcaaat
    21841 tcgaaggcat aaacgaccgc gacttggcat tctcattgcg cggttacacc atcgaaatac
    21901 cccgtgaagc attcgccccg acagaagaag acgaatacta ctggacagac ttggtcggca
    21961 tgaccgtcgt caacaaagac cataccgttt taggcaaggt aagcaacctg atggaaaccg
    22021 gcgcaaacga cgtattgatg attgacggag aacacgggca gattctgatt ccgttcgttt
    22081 cccaatatat cgaaaccgtc gataccggca gcaagattat tactgccgac tggggtttgg
    22141 actactgatg cttatccagg cagttaccat tttccccgaa atgttcgaca gcattacccg
    22201 ctacggcgta acgggacgcg cgaacagaca gggaatctgg cagtttgaag cagtcaatcc
    22261 ccgaaagttt gccgacaaca gattgggcta catcgacgac cgcccgttcg gcggcggccc
    22321 gggaatgatt atgatggctc cgccgcttca tgcagcaata gaacacgcca aagcacaatc
    22381 ttcccaagct gcaaaagtca tttacctcag cccccaagga aaaccgctga cacacccaaa
    22441 agcggcagaa ctggcagaac ttccgcatct gattctgctg tgcggacgct atgagggaat
    22501 agacgaaaga ctgctgcaaa ccagcgtcga tgaagaaatc agcatcggag acttcgttgt
    22561 ttccggcgga gagcttcccg ccatgatgct gatggatgcg gtattgaggc tcgtacccgg
    22621 cgtattgggc gatatgcagt ctgccgaaca agattcgttc tcaagcggca ttttggactg
    22681 cccccactac accaaaccct tagaatttca aggcatggct gttccggaag tattacgttc
    22741 cggcaatcat ggcttgatag cggaatggcg gttggaacaa tcgctgcgcc gcaccttgga
    22801 gcgcagaccc gatcttttgg aaaagcgcgt tttaatccca aaggaatccc gcctcttaga
    22861 aaccatccgg caagagcaac gggaaatcca atcataattt aggaaaaaaa caatgaacct
    22921 gattcaacag ctcgagcaag aagaaattgc ccgcctgaat aaagaaatcc ccgaattcgc
    22981 accgggcgac accgtagtcg tatccgtacg cgtcgtggaa ggtacccgca gccgtctgca
    23041 agcctacgaa ggcgtggtta ttgcccgtcg caaccgtggt ctgaacagca acttcatcgt
    23101 ccgcaaaatc tccagcggcg aaggtgttga acgtactttc caactgtact ctccgaccgt
    23161 cgaaaaaatc gaagtcaaac gccgtggcga cgtacgccgt gccaaactgt actacctgcg
    23221 cggcctgacc ggtaaagctg cacgcatcaa agaaaaactg cctgcacgca aaggttgatt
    23281 caaaccgttt tcccccaatg ccgtctgaac cttcagacgg catttcttat tgctgcgatg
    23341 ccggcaagtc aacgatatgc ctgcccctca tccaccttga ttaacaatca ctcccgccta
    23401 ttcaagcata atttacagac caaacgttat acagtatcat atcagccata taacgataaa
    23461 cgctttaccg ctttcccttt caaaaccgca aatcatcatg acaccttccc ttttactatc
    23521 aggattgacc ttccgcctca tccttgccct gattgccgta tcccttttat ggggcgttta
    23581 cttttgggca gtatccgcat gagcatcatt gtcgaaaacc tgaccgtcag ctaccgccgc
    23641 cgacctgccg tgcaccatgt ggacattact tttgaagaac atagtatgtg ggcggttttc
    23701 ggtcccaacg gcgcagggaa atccaccttt ctcaaatcct tgatgggatt gcagcctatc
    23761 gatacaggca gcatccggct ggacggattg acccgtcaga acattgccta ccttccccag
    23821 cagtccgaca tcgaccgctc gcagcctatg accgttttcg acttggcggc aatggggcta
    23881 tggtatgaaa tcggtttttt cagaggaata aataccgttc aaaaacaacg cgttcacgaa
    23941 gccttggagc gtgtaggaat gcggcagttt gcccgccgcc aaatcgccca cctctcaaac
    24001 ggacaatttc agcgtgtcct ttttgcccga atgctggttc aaaacgccaa attcctactt
    24061 ctggacgaac ccttcaatgc cgttgatgca cggacaacct acgagcttct cgacgtattg
    24121 caaaaatgtc attgcaacgg acacgctatc attgccgttt tgcacgatta cgaacaagtc
    24181 cgcgcctact ttcccaatac cctgctgctc gcccgagaaa aaattgcggc aggcgcaacc
    24241 gagaccattc tgacagaacc ctacctcgcc caagccaacg ccaaaatgca gcaacaggaa
    24301 agccccgact ggtgcgcctc ataaatactg cccgaaacca cgccccacac cagacaccat
    24361 gaatctctac gacctgctcc ttgccccctt tacagaattc gactttatgc gctacgccct
    24421 cgcatccgtc ttctgcctgt ccctcagtgc cgcacccgtc ggcgtattcc tcgtcatgcg
    24481 ccgtatgagc ctgataggcg acgcattgag ccacgccgtc ctgcccggtg ccgccgtcgg
    24541 ctacatgttt gccggcttga gcctgcccgc catgggtttg ggcggcgtag ccgcaggcat
    24601 gctgatggca ctgcttgccg gactcgtcag ccgcttcacc accctgaaag aagatgccaa
    24661 ctttgccgcc ttttatctca gcagcctcgc catcggtgta gtcctcgtca gcaaaaacgg
    24721 cagcagcgtc gatttgctcc acctcctttt cggctccgta cttgccgtcg atattcctgc
    24781 cctgcaactc atcgccgccg tatccaccct cacactgctt acccttgccg tcatctaccg
    24841 cccgctcgta ctcgaaagca tcgaccccct gttcctcaaa tccgtcggcg gcaaaggcgg
    24901 gctttggcac gtcctctttc tcgtcctggt cgtcatgaac ctcgtatccg gctttcaagc
    24961 cctcggcaca ctcatgtccg tcggactcat gatgctgcca gccattaccg cccgcctatg
    25021 ggcgaagcac atgggcgcac tcatcctcct atccgttctg acagccctgc tgtgcggctt
    25081 gagcggactg cttatttcct accacatcga aattccctcc ggtcccgcca tcatcctctg
    25141 ttgcagcgtc ctttatctct tttccgtcat actcggcaaa gaaggcggca ttctgaccaa
    25201 atggctcaaa aaccaccgcc accacaccac ctgaccccgc aagccgcttg aacaaacagg
    25261 cggcttgttt taccataaca gatgttacgt tatatcacag gagaacagtt atgaaacacc
    25321 tcaaactcac ccttattgcc gcattgctaa ccaccgccgc aactgctgcc cccctgcccg
    25381 tcgtaaccag cttcagcatt ttaggcgacg ttgccaagca aatcggcgga gagcgcgtat
    25441 ccatacaaag tttggtcgga gccaaccaag atacgcacgc ctatcatatg accagcggcg
    25501 acattaaaaa aatccgcagt gcaaaactcg ttctgctcaa cggcttagga cttgaagccg
    25561 ccgacatcca acgcgccgtc aaacagagca aagtatccta tgccgaagcg actaaaggca
    25621 tccaacccct caaagccgaa gaagaaagcg gacaccatca cgaccacgat catgaccatg
    25681 accacgaagg acaccaccac gaccacggcg aatatgaccc ccacgtctgg aacgaccccg
    25741 tccttatgtc cgcctatgcc caaaacgttg ccgaagccct gataaaggcc gaccccgaag
    25801 gcaaagttta ttatcaacaa cgcttgggca actaccaaat gcagctcaaa aaactgcaca
    25861 gcgacgcaca agccgcattt aatgccgtcc ctgccgccaa acgcaaagtc ctgaccgggc
    25921 acgatgcctt ttcctatatg ggcaaacgtt accatatcga attcatcgcc ccgcaaggcg
    25981 tgagcagcga agccgagcct tcagccaaac aagtcgccgc catcatccgg caaatcaaac
    26041 gcgaaggcat caaagccgtc tttaccgaaa acatcaaaga cacccgcatg gttgaccgca
    26101 tcgccaaaga gaccggtgtc aacgtcagcg gaaaactgta ttccgacgca ctcggcagcg
    26161 cgcccgccga cacctacatc ggaatgtacc gccacaacat caaagcctta accaacgcga
    26221 tgaagcaata aaaccgtttg attggtttga atttgaaaag gcaaaaggcc gtctga
//
LOCUS       DAXHPV010000008        26218 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.008, whole genome shotgun sequence.
ACCESSION   DAXHPV010000008 DAXHPV010000000
VERSION     DAXHPV010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 26218)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26218)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26218
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.008"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            319..609
                     /locus_tag="ACFM6C_000225"
     CDS             319..609
                     /locus_tag="ACFM6C_000225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157745.1"
                     /translation="MPSAQQANCPQKLFFMKNNPQVCTKGNPPYRHPFKTEIPMIFKI
                     KKSYPQKIPPINIIIVLLFKFYILFISLQGNARKSVKASFQKIKELRIVKQV"
     gene            661..2109
                     /gene="gnd"
                     /locus_tag="ACFM6C_000226"
     CDS             661..2109
                     /gene="gnd"
                     /locus_tag="ACFM6C_000226"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019269816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004616 - phosphogluconate dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating NADP(+)-dependent
                     phosphogluconate dehydrogenase"
                     /protein_id="HFC6157746.1"
                     /translation="MKGDIGVIGLAVMGQNLILNMNDCGFKVVAYNRTIGKVDEFLNG
                     AAKGTDIVGAYSLQDLVDKLAKPRKIMMMVRAGSVVDDFIEQLLPLLDEEDIIIDGGN
                     ANYPDTTRRTHYLAEKGILFVGAGVSGGEEGARRGPSIMPGGDKRAWEAVKPIFQAIA
                     AKTPQGEPCCDWVGKDGAGHFVKMVHNGIEYGDMQLICEAYQFMKDGLGLSYDEMHRV
                     FAEWNKTELDSYLIEITAAILGYKDESGEPLVEKILDTAGQKGTGKWTGINALDLGIP
                     LTLISEAVFARCVSSFKEQRVQTGKLFARTVTPVEGGKQEWVEALRQALLASKIISYA
                     QGFMLIREAGESYGWDLDYGNTALLWREGCIIRSAFLSNIRDAYENNPDLVFLGADPY
                     FKNILENCLPAWRKVVAKAVECGIPMPCMASAITFLDGYTTERLPANLLQAQRDYFGA
                     HTYERTDKPRGEFFHTNWTGKGGDTASTTYDI"
     gene            2172..3443
                     /gene="waaA"
                     /locus_tag="ACFM6C_000227"
     CDS             2172..3443
                     /gene="waaA"
                     /locus_tag="ACFM6C_000227"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HFC6157747.1"
                     /translation="MFQWLYDVLWLLAPIWIRRYLDKRSGSAPAYRAHRDERFGKPYP
                     NPVTGAVWIHAVSVGETRAAQPLIRELRQRFPDAPLLMTQMTPTGRETAQVLFPDAQC
                     RYLPYDKKTWVRQFLREHRPMFGILMETEIWPNLMKECRRTGVPLFLANARLSEKSLN
                     GYLKVRSLIRPAAASLTGCLAQTEADAARLAKLGAASVQVCGNTKYDLMPSEQMKTLA
                     GQFEKRIGDRQVAVCGSTRVYRGEDEAEKLLAAWQQYRGDALLVVVPRHPEHFQTVFE
                     TAKRFGFKVQRRSDGLPVEPDTQVWIGDSMGELYAYYLCADVAFVGGSLVDSGCQNII
                     EPLSCGVPTIFGFSTYNFSEACRHALASGAAVRVESADAWRETVEKTLSYEEGGMQMQ
                     ARADGFIAQHRGAGARIAEAVWEAVCGHRGR"
     gene            3484..3933
                     /locus_tag="ACFM6C_000228"
     CDS             3484..3933
                     /locus_tag="ACFM6C_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family copper resistance protein"
                     /protein_id="HFC6157748.1"
                     /translation="MSIYAVAHIVHLYCAIAFVGGVFFEVLVLSVLHTGRVSCEARRE
                     VEKAMSYRAVRVMPFVVGLLFASGVVMAANRYLPILGEPFATSFGTMLTLKILLAFSV
                     LAHFAIAVVKMARSTLTVGWSKYIHAVVFTHMLLIVFLAKAMFYISW"
     gene            3966..4934
                     /locus_tag="ACFM6C_000229"
     CDS             3966..4934
                     /locus_tag="ACFM6C_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HFC6157749.1"
                     /translation="MTEYPGIGSPLFYGVFFAAVLVMIALDMFSLKKNGSHKVGVKEA
                     LAWSGLWVAVSCLFAGWLYFELAGNLGYGAAVAKEKVLEFFTGYILEKSLAVDNIFVF
                     LMIFGYFKVAPQFQHRVLLYGVLGALVLRTVMIFVGAALVRQFEWILYLFGAFLLYTG
                     IHMMKPEGDEKEDLANSRLLNAVKKVVPVGTEFHGEKFFTVENGKKIATPLFLVLVMI
                     ELSDVVFAVDSIPAVFAVTTDPFIVLTSNIFAILGLRAMYFLLADVAERFIFLKYGLA
                     FVLGFIGVKMLVMHWVHIPISVSLSVVFGALGASILTSLIYTKKTA"
     gene            5010..5085
                     /locus_tag="ACFM6C_000230"
     tRNA            5010..5085
                     /locus_tag="ACFM6C_000230"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5043..5045,aa:Lys,seq:ttt)
     gene            5304..6557
                     /gene="murA"
                     /locus_tag="ACFM6C_000231"
     CDS             5304..6557
                     /gene="murA"
                     /locus_tag="ACFM6C_000231"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0019277 - UDP-N-acetylgalactosamine
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HFC6157750.1"
                     /translation="MDKLKISANGPLNGEITVSGAKNAALPLMCAGLLTSGTLRLKNV
                     PMLADVKTTQKLLQGMGARVLTDNISEFEINGGTVNNTCAPYELVRTMRASILVLGPT
                     LARFGEAQVSLPGGCAIGSRPVDQHLKGLEAMGAEIVIEHGYVKAKGKLKGTRVAMDV
                     VTVGGTENLLMAATLAEGTTVLENCAIEPEVVDLAECLVKMGAKISGIGTSTMVIEGV
                     DELHGCEHSVVPDRIEAGTFLCAVAITGGRVVLRNAAPKTMEVVLDKLVEAGAVIEAG
                     DDWIAIDMRQRPKAVDIRTVVHPGFPTDMQAQFMALNAVAEGSCRVVETIFENRFMHV
                     PELNRMGANITTEGNTAFVQGVERLSGAVVKATDLRASASLVIAGLAARGETVVEQIY
                     HLDRGYENIEKKLGSVGAKIERVSG"
     gene            6638..7816
                     /locus_tag="ACFM6C_000232"
     CDS             6638..7816
                     /locus_tag="ACFM6C_000232"
                     /EC_number="2.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HFC6157751.1"
                     /translation="MAFLKLTEQNVQGKTVLIRADMNVPFKDGKISDDTRIRASLASI
                     QYCMDNGASVIVMIHLGRPTEGEFHPEDDVAPVAAHLGGLLGKDVKVLNDWRENKPAL
                     NAGDVVMLQNVRINKGEKKNDLELGKAYASLCDVFVNDAFGTAHRAQASTEAVAQAAP
                     VACAGVLMAGELDALGKALKQPARPMVAIVAGSKVSTKLTILESLADKVDQLIVGGGI
                     ANTFLLAEGKDIGKSLAEHDLVEESKKIMAKMAAKGGSVPLPTDVVVAKAFAADAEAV
                     VKDIADVAEDEMILDIGPKSAAALADLLKAADTVVWNGPVGVFEFDQFAGGTKALAEA
                     IAQSKAFSIAGGGDTLAAIAKFGVTEQIGYISTGGGAFLEFLEGKELPAVAALEKRGA
                     "
     gene            complement(7883..8131)
                     /locus_tag="ACFM6C_000233"
     CDS             complement(7883..8131)
                     /locus_tag="ACFM6C_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1990229 - iron-sulfur cluster assembly
                     complex [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family protein"
                     /protein_id="HFC6157752.1"
                     /translation="MLTPEQVKAMIEGVAKCEHIEVEGDGHHFFAVIVSSEFEGKARL
                     ARHRLIKDGLKAQLESNELHALSISVAATPAEWNAKAQ"
     gene            complement(8222..9139)
                     /gene="ftsX"
                     /locus_tag="ACFM6C_000234"
     CDS             complement(8222..9139)
                     /gene="ftsX"
                     /locus_tag="ACFM6C_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="permease-like cell division protein FtsX"
                     /protein_id="HFC6157753.1"
                     /translation="MSIIHYLSLHVESARTALKQLLRQPFGTLLTLIMLAVAMTLPLF
                     MYLGIQSGQSVLGKLNESPQITVYMETAAAQSDSDTVRSLLARDKRLDNIRFIGKEDG
                     LEELQSNLDQNLISMLDGNPLPDVFIVTPDPATTPAQMQAIYRDITKLPMVESANMDT
                     EWVQTLYQINEFIRKILWFLSLTLGMAFVLVAHNTIRLQILSRKEEIEITKLLGAPAS
                     FIRRPFLYQAMWQSILSAAVSLGLCGWLLSAVRPLVDAIFKPYGLNIGWRFFYAGELG
                     LVFGFVIALGVFGAWLATTQHLLGFKAKK"
     gene            complement(9136..9786)
                     /gene="ftsE"
                     /locus_tag="ACFM6C_000235"
     CDS             complement(9136..9786)
                     /gene="ftsE"
                     /locus_tag="ACFM6C_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HFC6157754.1"
                     /translation="MIRFEQVSKTYPGGFEALKNVSFQINKGEMIFIAGHSGSGKSTV
                     LKLISGITKPSRGKILFNGQDLGTLSDNQIGFMRQHIGIVFQDHKILYDRNVLQNVIL
                     PLRIIGYPPRKAEERARIAIEKVGLKGRELDDPVTLSGGEQQRLCIARAVVHQPGLLI
                     ADEPSANLDRAYALDIMELFKTFHEAGTTVIVAAHDETLMADYGHRILRLSKGRLA"
     gene            complement(9783..9974)
                     /locus_tag="ACFM6C_000236"
     CDS             complement(9783..9974)
                     /locus_tag="ACFM6C_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157755.1"
                     /translation="MPSESASDGIFPARPSVSAKLIHYLKTGGIFIIGTVLPIVQTAY
                     PCGRNRPKRYAAHSLQDLL"
     gene            complement(9982..10464)
                     /locus_tag="ACFM6C_000237"
     CDS             complement(9982..10464)
                     /locus_tag="ACFM6C_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HFC6157756.1"
                     /translation="MKYLNLAAITLAATFAAHTASADELAGWKDNTPQSLQSLKAPVR
                     IVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIW
                     RYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTEAVKLAHSKCR
                     "
     gene            10588..10941
                     /gene="arsC"
                     /locus_tag="ACFM6C_000238"
     CDS             10588..10941
                     /gene="arsC"
                     /locus_tag="ACFM6C_000238"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271974.1"
                     /note="This arsenate reductase requires both glutathione
                     and glutaredoxin to convert arsenate to arsenite, after
                     which the efflux transporter formed by ArsA and ArsB can
                     extrude the arsenite from the cell, providing resistance;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0008794 - arsenate reductase
                     (glutaredoxin) activity [Evidence IEA];
                     GO_process: GO:0046685 - response to arsenic-containing
                     substance [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (glutaredoxin)"
                     /protein_id="HFC6157757.1"
                     /translation="MSEIKIFHNPRCSKSRAALSLLEERGIAAEVVKYLDTPPDLSEL
                     KDIFNKLGLESARGMMRVKDDLYKELGLDNPDLDNDALLRAIADHPALLERPIVLANG
                     KAAVGRPLENIEAVL"
     gene            10938..11594
                     /locus_tag="ACFM6C_000239"
     CDS             10938..11594
                     /locus_tag="ACFM6C_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HFC6157758.1"
                     /translation="MKKRLFCSRNGLRYYLLGGFCLSVFPLLLVFASSVWAVYRTGGQ
                     VLPPYVRADAALVLGAAAWDKRPSPVFRERINHAIALYQSRRVGKIIFTGGRSKKGYM
                     TEAEVGRRYALKQGIPPRNILFENTSRNTYENLNNIRPVLRANGIASVVIVSDPYHLA
                     RAAEMAEDLGVRVYMSATPTTRFDAGNKKKIFMLQEGYALSLYRLEKWGRDFFNWLFH
                     "
     gene            11787..13181
                     /gene="gltX"
                     /locus_tag="ACFM6C_000240"
     CDS             11787..13181
                     /gene="gltX"
                     /locus_tag="ACFM6C_000240"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HFC6157759.1"
                     /translation="MTVKTRFAPSPTGYLHIGGVRTALFSWAFARHHKGEFLLRIEDT
                     DLARSTAESVNIILDGMKWVGLDYDNADNVVYQTRRFERYKEVIAELLAKGDAYYCYC
                     SKEELEAMREKAEKEGTATYDRRWRPEAGKTLPEIPAGVQPVVRFKTPLDGVTKWADL
                     VKGEISIPNEALDDLIIARADGTPTYNFCVVVDDYDMGVTHVIRGDDHVNNTPKQINI
                     LKAIGATLPEYGHLPMILNEQGKKISKRSGDTVAITDFGAMGILPEAMLNYLARLGWA
                     HGDDEFFTMEQFIEWFDLKDVSPSPSRMDLKKLYWINGEHIKITPNGKLAELVKPRLA
                     LRDIHETEKPALEDVLAQVKDRAQDLNALADECLYFYKKQVPAEADVAKHWDDEAAAR
                     MLRFAERLEGLEDWNTEAIHDLFKPFCDEEGIKMGKLGMPLRLAVCGTAKTPSVDAVL
                     ALIGKEEVLKRIRA"
     gene            13202..13597
                     /locus_tag="ACFM6C_000241"
     CDS             13202..13597
                     /locus_tag="ACFM6C_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157760.1"
                     /translation="MPSDVGMRLQTAFKRKLNMKKILYFLMFVFSTSVWAGDAEDNLL
                     SIQSGYRALLQKQNNLDGKIIGMQSDLEDARRRLQTAQADIARLEAEIPAAMAQKARQ
                     AEELRQIGVRLDHAWNAVYGAGGTKASGN"
     gene            13601..14092
                     /locus_tag="ACFM6C_000242"
     CDS             13601..14092
                     /locus_tag="ACFM6C_000242"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFC6157761.1"
                     /translation="MNSLFVDNTVFITRLKAGHIGRLVQALFEEWHGFEPWSSVDKIH
                     AYYGRCLKDDELPLAFAAVDDFGTLLGSAAVKRHDMESFPQYEYWLGDVFVLPEYRGK
                     GIGRRLVAHCIGAARSLGIKFLYLYTPDVQIFYESFGWAVVGRHFHNGEWVTVMRLDM
                     DKV"
     gene            complement(14215..16809)
                     /gene="mutS"
                     /locus_tag="ACFM6C_000243"
     CDS             complement(14215..16809)
                     /gene="mutS"
                     /locus_tag="ACFM6C_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HFC6157762.1"
                     /translation="MSKSAVSPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAA
                     KLLDITLTTRGQVDGEPVKMAGVPFHAAEQYLARLVKLGKSVAICEQVGEVGAGKGPV
                     ERKVVRIVTPGTLTDSALLEDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDK
                     LDDELARLQAAEILLPDSKNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRG
                     FGLDGKEHAVAIGAAGALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEIT
                     QTLSGKKSPTLMSTLDLCATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQYKPL
                     QCRLKSIADIERIAARIAVGNARPRDLAALRDSLFALSEIELSAECSSLLGTLKAVFP
                     ENLSTAEQLRQAILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERE
                     RTGLSTLKVEFNRVHGFYIELSKTQAEQAPADYQRRQTLKNAERFITPELKAFEDKVL
                     TAQEQALALEKQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEF
                     ADYPVIHIENGRHPVVEQQVRHFTANHTDLDHKHRLMLLTGPNMGGKSTYMRQVALIV
                     LLAHTGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSL
                     VLMDEVGRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPEAHAAAVNMHL
                     SALEQGQDIVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNGLENQAAANRP
                     QLDIFSTMPSEKGDEPNVGNFVDKAEEKHFEGILAAALEKLDPDSLTPREALSELYRL
                     KDLCKSVS"
     gene            17253..18257
                     /gene="gap"
                     /locus_tag="ACFM6C_000244"
     CDS             17253..18257
                     /gene="gap"
                     /locus_tag="ACFM6C_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003766473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HFC6157763.1"
                     /translation="MSIKVAINGFGRIGRLALRQIEKAHGIEVVAVNDLTPAEMLLHL
                     FKYDSTQGRFQGTAELKDDAIVVNGKEIKVFANPNPEELPWGELGVDVVLECTGFFTN
                     KTKAEAHIRAGARKVVISAPGGNDVKTVVYGVNQDILDGSETVISAASCTTNCLAPMA
                     AVLQKEFGVVEGLMTTIHAYTGDQNTLDAPHRKGDLRRARAAALNIVPNSTGAAKAIG
                     LVIPELNGKLDGSAQRVPVATGSLTELVSVLERPVTKEEINAAMKAAASESYGYNEDQ
                     IVSSDVVGIEYGSLFDATQTRVMTVGGKQLVKTVAWYDNEMSYTCQLVRTLEYFAGKI
                     "
     gene            complement(18327..18446)
                     /locus_tag="ACFM6C_000245"
                     /pseudo
     CDS             complement(18327..18446)
                     /locus_tag="ACFM6C_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(18515..19195)
                     /gene="tsaA"
                     /locus_tag="ACFM6C_000246"
     CDS             complement(18515..19195)
                     /gene="tsaA"
                     /locus_tag="ACFM6C_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HFC6157764.1"
                     /translation="MTYTIVPIATARSPYKQKFGIARQPGLVSAAEVCIELNPEFTAD
                     SVRGLEHFDYVWISFIFHGVLDEGWAQMVRPPRLGGKQKMGVFATRSPHRPNHLGLSL
                     LKLERIETGKPVRLYCSGADLLDGTPIVDIKPYIPFVESKPDAASGFVSGKPVELEVV
                     WQENIGAENLSANTKNLISQSIAQDPRPAYQDIPERIYVMNIADYEVRFQIEENRATV
                     IDLSPTPL"
     gene            19310..19945
                     /locus_tag="ACFM6C_000247"
     CDS             19310..19945
                     /locus_tag="ACFM6C_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamidase"
                     /protein_id="HFC6157765.1"
                     /translation="MIVSIDVDAQKTFTPLCPKELPVNEGHLIVEELNAQAALADLRV
                     MTKDAHHAAAKWLVDNPVDMLKPTGLPDADLTWVAHAMVGTRGYELLDGLPCAKEYDY
                     CVWKGVDPELHPYGACFHDIEEKLSTGLIEWLRCQNTDTVIIGGLATDYCVKTTVLQL
                     LKGGRWQVVVNEAACRGIAPETIETAWQEMHSAGAIILKNADEINKYINNQ"
     gene            19982..20950
                     /gene="waaC"
                     /locus_tag="ACFM6C_000248"
     CDS             19982..20950
                     /gene="waaC"
                     /locus_tag="ACFM6C_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HFC6157766.1"
                     /translation="MKILLVRLSSMGDLIHTLPAIEDLARQCPDVELHWLCEAGFADI
                     ARLHPFVKKIHVMKWRQWRKHLFRAETWREMGHLKQTLRQEVFDFVLDSQGLIKSACF
                     AKMAKSPICGLDKNSAREGWAALAYVKTYAVPKGKNAVWRNRELFAQVFGYVMPETQV
                     FGLTVPEAGRLKNLAQPYYAALHATSRDSKLWPVENWRSLLQKLNEEQQCNIYLPWGN
                     EDEKTRAKQIADGLPFAIVCDKINLLQAAYLLKYAVGIVGVDTGLLHLANALEKPVVG
                     IYTDTDPIKTGVQVSPIAKNLGNIGQIPTADLVYQALMDCVAADKG"
     gene            21177..21926
                     /locus_tag="ACFM6C_000249"
     CDS             21177..21926
                     /locus_tag="ACFM6C_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HFC6157767.1"
                     /translation="MKALVAVKRVVDYNVKVRVKADGSDVDIGNVKMSMNPFDEIAVE
                     EAVRLKEAGKVSEIVAVSLGEKKCEETLRTALAMGADRAIHVETDAKLEPLAVAKLLK
                     AVADKENPQIFFLGKQAIDDDANQVAQMLAALLNAAQGTFASKVQIEGDEVQIVREID
                     GGEETIALKLPAVISADLRLNEPRFVKLPNIMAAKKKPLEKLAPADLVADISPRLKTV
                     KFAEPKARQAGVKVASVAELVEKLKNEAKVI"
     gene            21937..22872
                     /locus_tag="ACFM6C_000250"
     CDS             21937..22872
                     /locus_tag="ACFM6C_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HFC6157768.1"
                     /translation="MSVLIIAEHDNKQLNPATLHAVTAAAKLGKVDLLVAGNGASSVV
                     EFAKQVAGVEKVLVADAAHYAEGLAEELAPLVVKLAADYRYVAATATTFGKNLLPRVA
                     ALLDVPQISDLTEIVDNTTFVRPIYAGNAFETVQANAEKLVLTFRATAFDAAAVQGGN
                     AEVINIETTPAQNLSRFVNRQLSHSDRPELTQAKVIVSGGRALGSAEKFNEVLTPLAD
                     VLGAAIGASRAAVDAEYAPNDAQVGQTGKVVAPQLYFAIGISGAIQHVAGMQDSKVIV
                     AINKDADAPIFNVADYGLVGDLFEIVPQLTEALKN"
     gene            22935..23546
                     /locus_tag="ACFM6C_000251"
     CDS             22935..23546
                     /locus_tag="ACFM6C_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HFC6157769.1"
                     /translation="MITTYKTITSPTQAGFKDKGSRFIAFAYPIRTLADVKKYLDPLK
                     EEHHKARHWCYAYRLGVDGVQFRANDDGEPSGSAGRPILGQIDSVGITDVLVVVVRYF
                     GGTLLGVSGLIHAYKEATAQALAIAEVIEKNIEKTVWLKCEYPFLNEAIRIAKQYQAD
                     ILEQDLQLDCRLTVSLSLANYEVCVAAWKNTRQIEVNTEKPFE"
     gene            complement(23598..23915)
                     /locus_tag="ACFM6C_000252"
     CDS             complement(23598..23915)
                     /locus_tag="ACFM6C_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4298 domain-containing protein"
                     /protein_id="HFC6157770.1"
                     /translation="MQKRIDEIQSKYREWCHLLPQLEEDIRRWKYVVTLIRDMDNFYT
                     HEYQACHQAIEDGVELDLRTEGEYSIMSEDALWNALGEFHQLAWLYLRSSVDALDKYT
                     QED"
     gene            24073..25344
                     /gene="purD"
                     /locus_tag="ACFM6C_000253"
     CDS             24073..25344
                     /gene="purD"
                     /locus_tag="ACFM6C_000253"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HFC6157771.1"
                     /translation="MKLLVIGNGGREHALAWKLAQSPKVETVFVAPGNAGTAIEPKLQ
                     NIDLTAHQDLIEFSRKENIVFTVVGPEAPLAAGVVDDFRAAGLKIFGPTQYAAQLESS
                     KDFAKAFMAKYNIPTAQYQTFENADAAHDYVNQKGAPIVIKADGLAAGKGVIVAMTLD
                     EAHAAIDDMLLDNKMGNAGARVVIEDFLQGEEASFIVMVDGNNVLPMATSQDHKRLLD
                     GDKGLNTGGMGAYSPAPVVTPVVYERAMNEIILPTVAGMKAEGHEFTGFLYAGLMIDQ
                     SGAPYTIEFNCRFGDPETQPIMSRLNSDLSDLVEAAIDGRLDSVTAEWSPQTAVGVVL
                     AAQNYPETPKKGDVISGLDAANQVGKVFHAGTTANEKGDVLTNGGRVLCVVGLGDNVA
                     QAKAKAYGALEKISFDGMQYRKDIADKAINR"
     gene            25378..25980
                     /locus_tag="ACFM6C_000254"
     CDS             25378..25980
                     /locus_tag="ACFM6C_000254"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HFC6157772.1"
                     /translation="MTDVLQTVFYIMLFPRIIAASAQRKLSVYLKKGGLVAYPTESCY
                     GLGCLPTLAKALGKLAHLKKRPQHKGMIVIGNQFEQLQPLLQMPSENLQDMLRKEWPA
                     PKTFLLSAKSCVLPELRGKQRSKLAVRVPAHVGARRLCQALQTPLVSTSCNRAGKRAC
                     RTEREVRRQFGRDVWIVGGRIGRQKSPSQIIDGETGKRLR"
     gene            complement(26051..>26218)
                     /locus_tag="ACFM6C_000255"
     CDS             complement(26051..>26218)
                     /locus_tag="ACFM6C_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6157773.1"
                     /translation="INGIENFWNQAKRVLRKYNGIDRKSFPLFLKECEFRFNFGTLSR
                     QLKILQDWCGI"
BASE COUNT         6290 a         6039 c         7400 g         6489 t
ORIGIN      
        1 ctttcgtggg aatgacggga tgtaggttcg tgggaatgac gcggtacagg tttccgttac
       61 gtatccccat ccgaaacttt acttatacac aagcaatcca aagttatctg actgaaatat
      121 tgtgagattt acccgcaaat ctcatttttt ccaccactta tacacaaatt cggatgcgca
      181 ctctgccgat atgcagaaat aagacattcg tgccgacacc tgaccatttc cacacgttcc
      241 aaacacactt ccggcttaaa tctccacagt attcccgttc ttaaagacat cggcagccat
      301 tcggtaaaga aaagtaggat gccatctgca caacaagcaa actgtccaca aaaactattc
      361 ttcatgaaaa acaatccaca ggtatgcaca aaagggaatc cgccttaccg acaccctttt
      421 aaaacggaaa tcccaatgat ttttaaaata aaaaaaagtt acccacagaa aattcctcct
      481 atcaatataa tcatcgtttt attatttaaa ttttatattt tatttataag ccttcaggga
      541 aacgcacgga aaagcgtaaa ggcatctttt caaaaaatta aagagttaag gattgttaaa
      601 caagtgtaaa tcaggtagag ttgcggttga taaattaaat ctataacgga gcttcctgca
      661 atgaaaggcg atattggcgt aatcggtttg gcggttatgg ggcaaaacct gattttgaat
      721 atgaacgatt gcggatttaa ggttgtcgcc tacaaccgaa caatcggtaa ggtggacgaa
      781 tttttaaacg gcgcggctaa gggaacggat attgtcggcg cgtattccct gcaagacttg
      841 gtcgataagc tggcaaaacc gagaaaaatc atgatgatgg ttcgcgcagg ttcggtcgtc
      901 gacgacttta tcgaacaact gctgcccctg ttggacgagg aagacatcat tatcgacggc
      961 ggcaatgcca attaccccga cacgacacgg cggacacatt accttgccga aaaagggatt
     1021 ttgtttgtcg gggcgggcgt atccggcggc gaagaaggcg cgcggcgcgg gccgtccatt
     1081 atgccgggcg gggataagcg cgcttgggaa gccgtcaaac cgatttttca ggcgattgcc
     1141 gccaaaacgc cgcagggcga accgtgttgc gactgggtcg gcaaggacgg cgcggggcat
     1201 tttgtcaaaa tggtgcataa cggcatcgaa tacggcgata tgcagttgat ttgcgaagcg
     1261 taccagttca tgaaagacgg cttggggctg tcttacgacg aaatgcaccg cgtgtttgcc
     1321 gagtggaaca aaaccgagct ggattcttat ctgattgaaa tcacagcggc aattttgggc
     1381 tataaggacg aaagcggcga accgctggtc gagaaaatcc tcgatacggc agggcaaaaa
     1441 ggcacgggca aatggacggg catcaatgct ttggatttgg gtattccgtt gacgctgatt
     1501 tccgaagcgg tattcgcccg ctgcgtttcg tcgttcaaag aacagcgcgt gcagaccggc
     1561 aagctattcg cccgaaccgt tacgcccgtc gaaggcggca aacaagaatg ggttgaggcg
     1621 ttgagacagg ccctgcttgc atccaaaatc atttcctacg cacaaggctt tatgctgatc
     1681 cgcgaagcgg gcgaaagcta cggctgggat ttggactacg gcaacactgc gctgctgtgg
     1741 cgcgaggggt gcatcattcg cagcgcattc ttaagcaata tccgcgatgc ctatgaaaac
     1801 aatcccgatt tggtgttctt gggtgcggat ccgtatttca aaaatatttt ggaaaactgc
     1861 ctgccggcgt ggcgcaaggt ggttgccaag gcggtcgaat gcggcatccc tatgccatgc
     1921 atggcttcgg cgattacgtt cttggacggc tacacgaccg aacgtctgcc tgccaacctc
     1981 ttgcaggcac agcgcgacta cttcggcgca cacacttacg agcgcaccga caaaccgcgc
     2041 ggcgagtttt tccataccaa ctggacgggc aagggcggag ataccgcttc gacaacctac
     2101 gatatttgat tccgttgccg aaatgccgtc tgaaccgttc agacggcatt tgttttgcag
     2161 gaaatagaaa gatgttccaa tggctttatg atgtattgtg gctgcttgcg ccgatatgga
     2221 tacggcgtta tttggacaaa cgctccggaa gtgccccggc atatcgggcg catcgggacg
     2281 agcgtttcgg caagccgtat ccgaatcccg ttaccggagc ggtttggata cacgccgttt
     2341 cggtcggaga aacgcgtgcc gcccagccct tgatacgcga gttgcggcag cgttttcccg
     2401 atgcaccgct gctgatgacg cagatgaccc cgacgggacg ggaaaccgcg caagttctgt
     2461 ttcccgatgc gcaatgccgc tatcttccgt atgacaaaaa aacgtgggta cggcagtttt
     2521 tgcgcgaaca ccgcccgatg ttcggcattt tgatggaaac cgaaatctgg cccaatctga
     2581 tgaaggaatg ccggcgcacg ggtgtgccgc tgtttttggc gaatgcgcgg ctgtcggaaa
     2641 aatcgctgaa cggttatctg aaagtccgca gcctgatccg tcctgccgcc gcttcgctga
     2701 cgggctgtct ggcacagacg gaggcggatg cggcgcggtt ggcgaaattg ggcgcggcat
     2761 ccgtgcaggt gtgcggcaat accaaatacg acctgatgcc gtcggaacag atgaaaacgc
     2821 tggcggggca gtttgaaaaa cgcatcggag accggcaggt tgccgtgtgc ggtagcacgc
     2881 gcgtttatcg gggcgaagac gaggcggaaa aactgctggc ggcgtggcaa caatatcgcg
     2941 gcgatgcgct gctggtcgtc gtgccgcgcc atcccgagca ttttcagacg gtatttgaaa
     3001 cggcaaaacg cttcgggttt aaggttcagc ggcgcagcga cggtttgccg gtcgaacctg
     3061 atacgcaggt gtggataggc gacagtatgg gcgagctgta tgcgtattac ttgtgcgccg
     3121 atgtcgcttt tgtcggcggc agtctggtcg attcgggctg tcagaacatt atcgaaccgc
     3181 tttcctgcgg cgttccgacg atattcggct tttcaaccta caatttttcc gaagcctgcc
     3241 ggcacgcctt ggcatcgggg gcggcggttc gggttgagtc ggcggacgcg tggcgggaaa
     3301 ccgttgaaaa aaccttatcg tacgaggagg gcggaatgca gatgcaggcg cgcgcggacg
     3361 gctttatcgc acaacatcgc ggagcaggcg cgagaatcgc cgaggcggta tgggaagcgg
     3421 tatgcggaca tcgggggcga tagtgataca atccgtatcc gagttttccg gttggagcat
     3481 cgtatgagta tttatgccgt cgcgcacatc gtccacctgt attgcgccat tgcctttgtc
     3541 ggcggcgtgt tttttgaagt gctggttttg tccgtcctgc atacgggacg ggtgtcgtgc
     3601 gaggcgcggc gcgaagtgga aaaggccatg tcttaccgcg ccgtcagggt gatgccgttt
     3661 gtggtcggac tgctgttcgc cagcggcgtc gtgatggcgg caaaccgcta ccttcctata
     3721 ttgggcgaac cgtttgccac ttccttcggt acgatgctga cgctgaaaat cctgttggcg
     3781 ttcagcgtgt tggcgcactt cgccatcgcc gtcgtcaaaa tggcgcgttc cacactgacg
     3841 gtcggctggt cgaaatacat acacgccgtc gtctttaccc atatgctgct gattgtcttt
     3901 ttggcaaaag cgatgtttta tatcagctgg taacacaact acatttcaaa tcaggagatt
     3961 gaaccatgac agaatatccc ggcatcgggt cgccgttgtt ttacggcgtt ttttttgcgg
     4021 cagtgctggt catgattgcc ttggatatgt tttcgctgaa gaaaaacggc agccataaag
     4081 tcggcgtcaa agaagccttg gcatggagcg gcttgtgggt tgccgtatcc tgcctgttcg
     4141 cgggctggct gtatttcgaa ctcgccggca atctcggcta cggcgcggca gtcgcaaaag
     4201 aaaaagtatt ggaattcttt accggctaca ttttggaaaa atcgttggca gtcgacaata
     4261 ttttcgtgtt cctgatgata ttcggctact tcaaagtcgc accgcagttt cagcaccgcg
     4321 tgctgctgta cggcgtattg ggcgcattgg tattgcgcac cgtcatgatt ttcgtcggcg
     4381 cggcactggt tcggcagttt gagtggattc tgtatctgtt tggcgcgttc ctgctctata
     4441 ccggcataca catgatgaag cccgaaggcg atgagaaaga ggatttggca aacagcaggc
     4501 tgctgaatgc cgtcaagaaa gtcgttccgg ttggcacgga atttcacggc gagaaatttt
     4561 ttaccgtcga aaacggtaaa aaaatcgcca cgccgctgtt tttggtgcta gtcatgattg
     4621 aattgagcga tgtcgtgttt gccgtggaca gcatccccgc cgtctttgcc gttaccaccg
     4681 atccgtttat cgtgctgact tccaatattt tcgctatttt gggcttgcgg gcgatgtatt
     4741 tcctgctggc ggatgtggcg gaacgcttta tcttcctgaa atacggcttg gcattcgtgt
     4801 tgggttttat cggtgtgaaa atgctggtaa tgcattgggt gcatatcccg atttccgttt
     4861 cgctgtcggt cgtgttcggc gcattgggtg catcgatact gacctcgtta atttatacga
     4921 aaaaaacagc ctgataaata aaatgccgta tgagcgccga caaaatggtt gacagcatca
     4981 ggcttgatgt atagaatttc gagcttatcg ggtcgttagc tcagtcggta gagcagcgga
     5041 cttttaatcc gttggtcgag cgttcgaatc gctcacgacc caccagataa aacaaaaaag
     5101 ctgagttttc aaaactcggc tttttttgtc ttccgacaat ccttgttcgg aaagcgcggc
     5161 atttcgtcaa attctttggt gcggcttccg tatttttccc gaaaatccct tataattccg
     5221 cctctgcaac cttcatcggg tgatgcttta tgcgttgtcc cgagtattga aatattacaa
     5281 gtacccacca ggaaagaaca aacgtggaca aactgaaaat ctccgcaaac ggcccgctca
     5341 acggggaaat aacggtctcg ggcgcgaaaa acgcggcatt gccgctgatg tgcgcgggtt
     5401 tgctgacatc gggtacgttg cgcctgaaaa acgtccctat gctggcagat gtgaaaacca
     5461 cgcaaaaact gcttcagggg atgggcgcgc gcgttctgac cgacaatatc agcgaatttg
     5521 aaattaacgg cggcacggta aacaatacct gcgcgcctta cgaattggta cggacgatgc
     5581 gggcctcgat tttggtgctg gggcctactt tggcacgttt cggcgaggcg caagtcagcc
     5641 tgccgggcgg ctgcgccatc ggttcgcgcc ccgtcgatca gcatttgaaa ggcttggaag
     5701 cgatgggtgc tgagattgtt atcgaacacg gttacgtcaa agccaaaggc aaactcaaag
     5761 gtacgcgcgt ggcgatggat gtcgttaccg tcggcggcac ggaaaacctg ctgatggcgg
     5821 cgacgctggc ggaaggtacg acggttttgg aaaactgcgc cattgagcct gaagtggtcg
     5881 atttggcgga atgcctggtc aaaatgggcg cgaaaatcag cggcatcggt acgtccacga
     5941 tggttataga aggggtggac gagctgcacg gctgcgaaca cagcgtcgtc cccgaccgga
     6001 tcgaggcggg gacgttcctg tgcgcggtgg cgataaccgg tggcagggtg gttttgcgga
     6061 atgccgcgcc gaaaacgatg gaagtggtgt tggacaaact ggttgaggca ggtgcggtga
     6121 ttgaggcggg cgacgattgg atcgccatcg atatgcggca gcgtccgaag gcggtggaca
     6181 tccgcacggt cgtccacccc ggcttcccca cggatatgca ggcgcagttt atggcattga
     6241 atgccgtggc ggagggaagc tgccgcgtgg tggaaacgat ttttgaaaac cgctttatgc
     6301 acgtccccga gttgaaccgg atgggggcga acatcacaac cgagggtaat acggcatttg
     6361 tgcagggtgt ggaacggctt tccggcgcag tcgtcaaggc gacggatttg cgtgcgtccg
     6421 caagcctcgt tatcgccggt ttggcggcgc gcggcgaaac cgtggtcgaa cagatttacc
     6481 acttggatcg cggttatgaa aatattgaaa aaaaactcgg cagcgtcggc gcgaaaatcg
     6541 agcgcgtatc cggctgatcg ggttgcgatg ccgtctgaag ccttcagacg gcatcaattg
     6601 tttctgtatc gcaaacactg attgaaaagg actgattatg gcatttttaa aactgaccga
     6661 acaaaacgtg cagggcaaaa ccgtcctcat ccgcgccgat atgaacgtgc cgttcaaaga
     6721 cggcaaaatc agcgacgaca cccgtatccg cgcctcgctc gcgtccatcc aatactgtat
     6781 ggacaacggc gcatccgtta tcgtgatgat ccacttgggt cgcccgactg aaggcgagtt
     6841 ccaccccgaa gacgacgttg cgcccgttgc cgcgcatttg ggcggtctgt tgggcaaaga
     6901 cgtgaaagta ttgaacgact ggcgcgaaaa caaaccggct ttgaacgcgg gcgatgtcgt
     6961 gatgctgcaa aacgtgcgta tcaacaaagg cgagaagaaa aacgatttgg aactgggcaa
     7021 agcctacgct tctttgtgcg acgtgttcgt caatgacgcg ttcggcaccg cccaccgcgc
     7081 ccaagcctcg accgaagccg tcgctcaagc cgcgcccgtt gcctgcgccg gcgtattgat
     7141 ggcgggcgaa ctcgacgctt tgggcaaagc cctgaaacag cccgcgcgcc cgatggttgc
     7201 catcgttgcc ggcagcaaag tgtccaccaa gctgaccatc ctcgaatcgc tggcggacaa
     7261 agtcgaccaa ctcatcgtcg gcggcggtat cgccaacacc ttcctgttgg cggaaggtaa
     7321 agacatcggc aaatctttgg cggaacacga tttggtggaa gaatccaaaa aaattatggc
     7381 gaaaatggcg gccaaaggag gttctgtgcc gctgccgacc gatgtcgtcg ttgccaaagc
     7441 ctttgccgcc gatgccgaag cggtggtaaa agacattgcc gacgttgccg aagacgagat
     7501 gattttggat atcggcccga aatctgccgc cgcgcttgcc gatttgctta aagccgccga
     7561 cacggtcgtt tggaacggac cggtcggcgt gttcgagttt gaccagttcg caggcggtac
     7621 gaaagccctt gccgaagcca ttgcccaaag caaagcgttc tccattgctg gcggcggcga
     7681 cacgctggcg gcgattgcca aattcggcgt taccgaacaa atcggctaca tctccaccgg
     7741 aggtggtgcg ttccttgagt tcttggaagg caaagagctg cctgccgtag ccgctttgga
     7801 aaaacgcggc gcgtaagcgg tttgatataa aaaatgccgt ctgagacgtt gtgctgtttc
     7861 tgacggcatt tttgtgtggc ggttattgtg ctttggcatt ccattctgcc ggtgtggcgg
     7921 ctactgaaat ggaaagtgcg tgcagttcgt tgctttccag ttgggcttta agcccgtctt
     7981 taatcaggcg gtggcgtgca aggcgtgcct tgccttcaaa ttctgatgaa acgatgacgg
     8041 cgaaaaaatg gtgtccgtcg ccttctactt cgatatgttc gcattttgcc acgccttcaa
     8101 tcatggcttt tacttgttcc ggggtcagca tggtaggttc cttgttggaa aaatgcgcca
     8161 ttatactggc aaattgaaat gccgtctgaa aacgggttcg gacggcattt ttgacggtgt
     8221 tttatttttt ggctttgaag ccgagcaggt gctgggtggt ggcaagccac gcgccgaata
     8281 cgcccaacgc gatgacgaag ccgaacacca gcccgagttc gccagcgtag aagaaccgcc
     8341 agccgatatt aagtccgtag ggtttgaaaa tggcatcgac caatgggcgc acggcagaga
     8401 gcagccaacc gcaaagcccc aagctgacgg cggcggaaag gatgctctgc cacatggctt
     8461 gataaaggaa ggggcggcgg ataaacgacg cgggcgcgcc caagagtttg gtgatttcga
     8521 tttcttcttt tcggctgagg atttgcagtc ggatggtgtt gtgcgcgaca aggacgaacg
     8581 ccatccccag cgtcagggaa agaaaccata agattttacg gatgaattcg ttgatttggt
     8641 acagtgtctg tacccattcc gtatccatgt tggcggattc gaccataggc agtttggtaa
     8701 tgtctcggta gattgcctgc atttgggcgg gcgtggttgc cgggtcgggg gtaacgataa
     8761 agacatccgg cagggggttg ccgtcaagca tggaaatcag attttggtcg agattggact
     8821 gtaattcttc caaaccgtct tctttgccga tgaagcggat gttgtcgagc cgtttgtcgc
     8881 gcgccagcag gctgcggacg gtatcgctgt cgctttgtgc ggcggcggtt tccatataga
     8941 cggtgatttg cggcgactca ttgagtttgc ccaacacgct ttgcccgctt tggatgccca
     9001 aatacataaa cagcggcagg gtcatggcga cggcgagcat tatgagggta agcagtgtgc
     9061 cgaaaggttg gcgcagaagc tgtttgagcg cggtgcgcgc ggattcgacg tgcagcgaga
     9121 ggtagtggat gatgctcatg cgagtcgtcc tttcgagagg cgcaggatgc ggtgtccgta
     9181 gtccgccatc agggtttcgt catgtgcggc gacgatgacg gttgttcccg cttcgtggaa
     9241 ggttttgaac aattccataa tatcgagcgc gtaggcgcgg tcgaggttgg cggagggttc
     9301 gtcggcaatc agcaggccgg gctggtgaac gacggcgcgg gcgatgcaca ggcgttgttg
     9361 ttcaccgccg gagagggtta cgggatcgtc caattctcgc cctttcaagc cgactttttc
     9421 aatggcgatg cgggcgcgtt cttcggcttt gcgcggcgga taaccgataa tccgaagcgg
     9481 caggatgacg ttttgcagga cgttgcggtc gtagaggatt ttgtggtctt ggaacacgat
     9541 gccgatgtgt tggcgcataa agccgatttg gttgtcggac aatgtgccga ggtcctgccc
     9601 gttaaacagg attttgcccc tgctcggctt ggtgatgccc gaaatcagct tgaggacggt
     9661 ggatttgccc gaaccggagt gtcctgcgat aaatatcatt tcgcctttgt tgatttggaa
     9721 gctgacgttt ttcagggctt caaaaccgcc gggataggtt ttggaaactt gttcgaaacg
     9781 gatcatagga ggtcctgtaa ggaatgggcg gcatatcgtt tcgggcggtt gcgtccgcag
     9841 ggatatgccg tctgaacaat aggtaagaca gtgccgatta taaagattcc gcctgttttt
     9901 agatagtgga taagtttggc ggataccgaa ggtcgggcgg gaaaaatgcc gtctgaagcg
     9961 gattcagacg gcatccggcg tttaacggca ttttgaatgg gcgagtttga cggcttcggt
    10021 caggcttttt tcgttcactt ccccggtaat ggtctgcctg tatccgcatt tcggtgcttc
    10081 gacgacggta aagggcagta cgccgacagt gtttccgtag gttttcataa agtttcggct
    10141 gttcgccccg gtgtaacgcc aaatcgggta ggaaacagga gtttgtttga ggaagttgcc
    10201 gatattgtcg gatgtgtcga gcgcgatgcc gaccatatcg acgctgcctt ttttctgcgc
    10261 tttgtaccat ttggacatgg caggcatctc ttttcggcac ggaccgcacc aggttgccca
    10321 aaggttgacg atgcgtacgg gggctttgag tgattgcagg ctttgtgggg tgttgtcttt
    10381 ccatccggcc agttcgtctg ccgaggcggt atgtgcggca aatgtggcgg caagggtgat
    10441 tgcggcaaga ttcaagtatt tcatcgtttt gtcctttgta tgtcgattcg ggtattgtaa
    10501 accgtttggt acggttgtag gcgggatatt gagtaaaacc ctgtgtaagc cgataataag
    10561 gggattgtcg agaagtaagg aaatgtcatg tctgaaatca aaattttcca caacccccgt
    10621 tgcagcaaat cgcgtgccgc cttgtcctta ttggaagaac gcggcattgc tgccgaagtg
    10681 gtcaaatatt tggatacgcc gcccgacttg tccgaattga aggatatttt caacaaattg
    10741 ggcttggagt cggcgcgcgg gatgatgcgt gtgaaagatg atttgtacaa ggaattgggt
    10801 ttggacaacc ctgatttgga caatgacgcg ctgctgcgtg ccatcgccga tcatcccgcc
    10861 ctgttggagc gtccgattgt tttggcgaac ggtaaggcgg ctgtaggcag gcctttggaa
    10921 aatatcgaag cggtattgtg aaaaaacggc tgttttgcag ccgcaacggc ttgcgctatt
    10981 acctgttggg cggtttctgt ttgagtgttt ttccgctttt gctggtgttt gcctcatccg
    11041 tttgggcggt ttatcggacg ggcggtcagg ttttgccgcc gtatgtccgg gcggatgccg
    11101 cgctggtgtt gggcgccgcc gcgtgggaca aacgcccttc cccggttttt cgggaacgca
    11161 tcaaccacgc catcgcgctt tatcagagcc gcagggtcgg caaaatcatt tttaccggcg
    11221 gcaggagtaa aaagggttat atgacggagg cggaagtcgg gcggagatac gcgctcaagc
    11281 aaggaattcc gccgcgcaac atcctgtttg aaaacacttc gcgcaacact tatgaaaacc
    11341 tgaacaacat ccgtccggtt ttgcgtgcca acggtattgc cagcgtggtg attgtcagcg
    11401 atccctacca tttggcgcgg gcggcggaaa tggcggagga tttgggtgtc cgcgtttata
    11461 tgtctgccac cccgaccacg cggtttgatg cgggaaataa gaaaaaaatc tttatgctgc
    11521 aagagggata tgcgttatcc ctctaccgtt tggaaaaatg ggggcgggat tttttcaatt
    11581 ggctgtttca ttgaaccttt ttttcggacg caatcccgaa ggaacccggt cggcggcgcg
    11641 tgatacactg ttccgcgtgc cgaagcattg aaaacaagga aaatgccgtc tgaaacttat
    11701 ccgcaggcag ggttcggacg gcatttttaa tgcccaagca cggtaaaaac agtaaaataa
    11761 gccgttttaa agattctgga gccatcatga ccgtcaaaac ccgtttcgcc cccagcccca
    11821 ccggctacct gcacattggc ggcgttcgca ccgccttgtt ttcatgggcg tttgcccgcc
    11881 atcacaaagg cgagttccta ttgcgtatcg aagacaccga cttggcgcgt tccaccgccg
    11941 aatccgtcaa catcatcctc gacggcatga aatgggtcgg tctcgattac gataacgccg
    12001 acaacgtggt gtaccaaacc cgccgcttcg aacgctataa agaagtcatc gccgaactct
    12061 tggcaaaagg cgatgcctac tactgctatt gcagcaaaga agaattggaa gcgatgcgcg
    12121 agaaagccga aaaggaaggc acggcgactt acgaccgccg ctggcggccg gaagcaggca
    12181 aaaccctgcc cgaaatccct gccggcgtgc aacccgtcgt ccgcttcaaa acgcctttgg
    12241 acggcgtaac caagtgggcg gacctggtca aaggcgaaat ttccatcccc aacgaagccc
    12301 tcgacgacct gattattgca cgcgccgacg gcacaccgac ctacaacttc tgcgttgtcg
    12361 tagacgacta cgacatgggc gttacccacg ttatccgtgg tgacgaccat gtgaacaaca
    12421 ccccgaaaca aatcaacata ttaaaagcca tcggcgctac cctgcctgaa tacgggcacc
    12481 tgccgatgat tctcaacgaa caaggcaaaa aaatctccaa acgcagcggc gataccgttg
    12541 ccattaccga tttcggcgca atgggcatcc tgcccgaagc catgctcaac tatctggcac
    12601 gtttgggctg ggcgcacggc gacgacgagt tctttacgat ggaacaattc atcgaatggt
    12661 ttgatttgaa agacgtttcc ccgtccccaa gccgtatgga tttgaaaaaa ctctattgga
    12721 tcaacggcga acacatcaaa atcacgccta acggcaaact cgccgaactc gtcaaaccgc
    12781 gtctcgctct gcgcgatatc catgaaactg aaaaacctgc gttggaagac gtgttggcac
    12841 aggtcaaaga ccgcgcccaa gatttgaacg ccttggcaga cgaatgtctg tatttctaca
    12901 aaaaacaagt ccctgccgaa gccgatgttg ccaaacactg ggatgacgaa gcggcggcac
    12961 gcatgctgcg ctttgccgaa cgcctcgagg gtttggaaga ctggaatacc gaagccatcc
    13021 acgacctgtt caaacctttc tgtgacgaag aaggcattaa aatgggcaaa ctcggcatgc
    13081 ctttgcgcct cgctgtctgc ggcacggcga agaccccaag cgtcgatgcc gtattggcat
    13141 taatcggcaa agaagaagtg ttgaaacgca tccgcgctta agttatccac aggcgtgggc
    13201 gatgccgtct gatgtcggaa tgcggcttca gacagcattc aaacggaagt tgaacatgaa
    13261 aaaaatattg tattttctga tgtttgtttt ttctacaagc gtatgggccg gggatgcgga
    13321 agacaatctg ctcagcatcc aatccggcta tcgtgcctta ctgcaaaaac aaaacaatct
    13381 ggacggaaaa atcatcggga tgcagtcgga tttggaagat gcgcgccggc gtttgcagac
    13441 ggctcaagca gacatcgccc gtttggaagc ggaaattcct gcagcaatgg cgcaaaaagc
    13501 ccggcaggct gaagagctga ggcaaatcgg agtgcgtttg gaccatgctt ggaatgcggt
    13561 ttacggcgca gggggaacga aagcgtcggg gaattgaccg atgaattccc tctttgtaga
    13621 caatactgtt ttcattacac ggctgaaagc cgggcatatc ggcaggttgg ttcaggcgtt
    13681 gtttgaggag tggcacggat ttgaaccgtg gtcttctgtg gataagattc atgcctatta
    13741 cggcaggtgt ttgaaggatg acgaactgcc gctggcattt gcggctgtgg atgatttcgg
    13801 aaccctgttg ggttcggctg cggtcaagcg gcatgatatg gaaagttttc cacagtatga
    13861 atattggttg ggtgatgtct ttgttttacc tgaatatcgc ggaaaaggca ttggcaggag
    13921 gctggtcgcc cactgcatag gcgcagcgcg ttcgctgggg ataaagttct tgtatcttta
    13981 tacgcctgat gtgcaaatat tttatgaatc attcggctgg gcggttgtcg ggcgacattt
    14041 ccataacggt gaatgggtta cggttatgcg tttggatatg gataaggttt aagccgaatg
    14101 gacaaatgcc gtctgagctg ttcggacggc atttttatgt ttggaaactt cttgtcagat
    14161 aatgtttatc cacagatttt tccatatggt ttgatgctgt tccgacaacg gaaattaaga
    14221 tacggatttg cacaaatctt tcagacggta cagttctgac aatgcttcgc gcggggtcag
    14281 gctgtcggga tcgagttttt ccaaggctgc tgccaatata ccttcaaaat gtttttcctc
    14341 tgctttatcc acaaagttgc ccacattcgg ttcatctcct ttttcagacg gcatggtact
    14401 gaaaatatcc agttggggac ggttcgcggc ggcttggttt tccagtccgt tcaaatgctt
    14461 ttgggcggat ttcaatgcgc gtacaggcag gccggcgagt ttggcgacgg caatgccgta
    14521 gcttttaccg gcgggacccg gttggatttg gtgcaggaaa acgatgtcct gtccctgttc
    14581 gagcgcggaa aggtgcatat tgacggcggc ggcgtgggct tcgggcaggt aggtcagctc
    14641 gaaatagtgg gtagcaaaca ggctgaagga tttgtttttt tgcagcaggt gttcggcaac
    14701 ggcgtgcgcg agggcgaggc cgtcgaaagt ggaagtacca cgtccgactt cgtccattaa
    14761 aacaaggctt tgttcggtgg cgtgatgcag gatgtaggcg gtttcgctca tttcgaccat
    14821 gaaagtggag cggttggagg cgaggtcgtc cgatgcgccg atgcgggtga agatttgatc
    14881 gatgggcccg attgtggcgg catcggcagg cacaaaacag ccggtgtgtg ccaataaaac
    14941 aatcagcgcg acttggcgca tgtaggtgga tttgccgccc atattggggc cggtgagcag
    15001 catgaggcgg tgtttgtggt caaggtcggt gtggttggcg gtgaagtggc gtacctgctg
    15061 ttcgacaacg ggatggcggc cgttttcgat gtggataacc ggatagtcgg caaactcggg
    15121 gcggacgaag ttccgctctt ttgccaaggc tgaaaatgtg gacaacacgt ccagcgcggc
    15181 ggcggctttg gcggcttttt gaagctgcgg caatgccgtc tgaaggtttt tcaatacgcc
    15241 gtcaaagagt tgtttttcta aggcgagggc ttgctcttga gcagtcagca ctttgtcttc
    15301 aaaggctttc aactccggcg tgatgaagcg ttcggcgttt ttgagggttt gccggcgttg
    15361 gtagtcggca ggtgcttgtt cggcttgggt tttggacaat tcaatgtaaa agccgtgaac
    15421 gcggttgaac tcgactttga gtgtggacaa accggtacgt tcgcgttcct tggcttccaa
    15481 atccagcaaa aattcgtcgc catggttttg aatgcggcgc aattcgtcca gttcgggatg
    15541 aaaaccgtgg ttgatgacat tgccgtcttt cagccagacg gaaggttcgg gcaaaatggc
    15601 ttggcggagc tgttcggctg tggataggtt ttccgggaaa acggctttga gggttcctaa
    15661 gagactgctg cactcggcgg acaattcgat ttcggacagg gcaaacaggc tgtcgcgcag
    15721 ggcggcgagg tcgcgcgggc gggcgttacc cacggcaata cgggcggcga tgcgttcgat
    15781 gtcggcaatg cttttcagac ggcactggag gggtttgtat tggctttcca gcgcggcaac
    15841 ggcttcttgg cgcgctcgga tgtgggcgcg gttgcgtaaa gggtggtgca gccagagagc
    15901 caagaggcgg ctgcccatat gggtagcgca aaggtcgagc gtggacatca gggtcggcga
    15961 ttttttgccg gagagggttt gcgtgatttc gagattgcgg cgcgtggcgg catccatacc
    16021 gatatattgg ctgtcggttt cgagcgacag gccgtccaaa tgttgcggca tcaggttttg
    16081 cgtcagacgg atatagttca acagtgcacc tgccgcgcca atcgcaacgg cgtgttcttt
    16141 gccgtccaaa ccgaagccgc gcaaatcctg gcagccgaaa tattccgtca gcagtttttc
    16201 ccccgcgtcg gcggcaaact gccacgcgtt caggcgcgta acacccgatg ccgtctgaag
    16261 ttgcggtgcg tttttactgt ccggcaacag aatttccgcc gcctgcaggc gcgccagttc
    16321 gtcgtccaat ttatccacag ttgtcagctt ggttttgaat tcgccgcttt gcagcgatgc
    16381 ccacgccaaa ccgatgtatt ttttgtcggg ggacacggca acgatgcggt tggtttcctt
    16441 gtcttccagc aatgcggaat cggtcagcgt gccgggcgtt acgatgcgca cgactttgcg
    16501 ctccaccggt cctttgcccg cgccgacttc gccgacctgt tcgcaaatcg ccacgctttt
    16561 gcccaacttg accaggcgcg ccagatattg ttcggcggcg tgaaacggca cgcctgccat
    16621 tttgaccggc tcgccatcca cctgtccgcg cgtggtcagg gtaatatcca aaagttttgc
    16681 cgcttctacc gcatcgtcga aaaacatctc gtaaaaatca cccatgcggt aaaacaccag
    16741 tttgtcggta tgttgcgctt tgatgccgag gtattgctgc atcattgggg aaacggcgga
    16801 tttggacatg gggctgcctt atcattagga aaacggtatt gtagcaaaag gttttgtctt
    16861 cgacggaatg agactgaccg taagcctgtc aataaggttg tggagacaag taggaaaaca
    16921 gcaaagttat ccacggagat attattaagt caaaaaacat ccacgtttat ctgtcctata
    16981 cggcaagcct taaactcaaa cttatttgac gaaaaggtaa tgaaaatatt ggatatttgc
    17041 aacttataca caagcagatc cgcaatcatc aaaatcatca ttaaaatttt aaattcaaat
    17101 attgatggta aaagttttgg aaatctgtgc aaacagtaaa attcatctat atcaaataag
    17161 catcaagtag ttagatgtaa tagtggaatg taactttatt tcagaataca atacagatat
    17221 tgaaatttcg tttcacagct tggagtatat acatgagcat taaagtagcg attaacggtt
    17281 tcggccgcat cggccgcctc gcattgcgtc aaattgaaaa agcccacggc atcgaagtcg
    17341 tcgctgtcaa cgacctgacc cctgccgaaa tgctgctgca ccttttcaaa tacgacagca
    17401 cgcaaggccg tttccaaggt actgccgaat taaaagacga tgccatcgtg gtaaacggca
    17461 aagaaatcaa agttttcgcc aatccgaatc ccgaagaatt gccttggggc gagttgggtg
    17521 tggatgtcgt cctcgaatgt accggcttct ttaccaataa aaccaaagcc gaagcacaca
    17581 tcagggccgg cgcgcgcaaa gtcgtgattt ccgcacccgg cggcaatgat gtgaaaaccg
    17641 tcgtatatgg cgtaaaccaa gacattttgg acggcagcga aaccgttatc tccgctgctt
    17701 cctgcaccac caactgcctt gccccgatgg cggcagtcct gcaaaaggaa ttcggcgtag
    17761 tcgaaggcct gatgaccacc atccacgcct acaccggcga ccaaaacacc cttgacgcgc
    17821 cgcaccgcaa aggcgatttg cgccgcgccc gcgccgccgc gctcaacatc gtgcccaaca
    17881 gcaccggtgc cgccaaagcc atcggtctgg ttatccccga attgaacggc aaactcgacg
    17941 gctccgccca acgcgtccct gttgccaccg gctcgctgac cgaattggtt tccgtcctcg
    18001 aacgccctgt aaccaaagaa gaaatcaacg ccgcgatgaa agcagccgcc agcgaatctt
    18061 acggctacaa cgaagatcaa atcgtttctt ccgacgttgt cggcatcgaa tacggctcgc
    18121 tcttcgatgc gacccaaacc cgcgtgatga ccgtgggcgg caaacaattg gtgaaaaccg
    18181 ttgcctggta cgacaacgaa atgtcctata cctgccaact cgtccgcact ttggaatact
    18241 ttgcaggcaa aatctaaggc ttgaacaaac ctgtggataa gtaaatgccg tctgaacaca
    18301 ttgcgttcag acggcattgt ttatctgtat agtggattaa atttaaacca gtacggcgtt
    18361 ccctcgcctt gccgtactat ttgtactgtc tgcggcttcg ttgccttgtc ctgatttaaa
    18421 tttaatccgc tataacttga tattgcggct tatggcgaac aaacaacagc cgtttgttca
    18481 actgctatgc ggcaaaaccg gatttttgcc cgatttaaag cggggttggg gaaagatcaa
    18541 taacggttgc acggttttcc tcgatttgaa atctgacttc gtaatccgca atattcatca
    18601 cataaatccg ttcgggaata tcctgatagg ctgggcgcgg atcttgggca atgctttggc
    18661 tgataaggtt tttggtgttt gcagataaat tttccgcgcc gatgttttcc tgccaaacga
    18721 cttccaactc tacgggtttg ccgctgacga aaccagatgc ggcatcgggt ttggattcga
    18781 caaaggggat ataaggtttg atgtccacaa tcggtgtgcc gtccagcagg tctgcaccgc
    18841 tgcaatagag gcggacgggt ttgccggttt cgatgcgttc gagtttcagg agcgagagtc
    18901 cgagatggtt ggggcggtgg gggctgcgcg tggcgaacac gcccattttt tgtttgccgc
    18961 cgagccgtgg tgggcgcacc atttgcgccc agccttcatc caatacgccg tgaaaaataa
    19021 aacttatcca cacatagtcg aagtgttcca gtccgcgtac gctgtctgcg gtaaattcgg
    19081 gattcagctc gatgcatact tctgcggcag agaccaaacc gggctggcgt gcgatgccga
    19141 atttctgttt gtagggcgat cgggcggtgg cgatagggac gatggtgtaa gtcatgagga
    19201 ttgtggataa gtttttcgga aaaaccttat cttatcacag cctgttttac cgcttttggg
    19261 cagtaatttg ttataataca gggcatttta attgcgttga aatgatgaga tgattgtttc
    19321 cattgatgtt gatgcacaaa aaacttttac gcctttgtgt cctaaagagc tgcctgtaaa
    19381 cgaggggcat ttgattgtcg aagaattgaa tgcccaagcc gctttggcgg atttgcgcgt
    19441 gatgacgaaa gatgcgcatc atgcggcagc aaaatggctt gtggataacc ctgttgatat
    19501 gttgaagccg acaggtttgc ccgatgcgga tttgacttgg gtggctcatg cgatggttgg
    19561 tacgcgcggc tatgaattgt tggacgggct gccttgtgcc aaagaatacg attattgcgt
    19621 ttggaaaggt gttgatcctg aattgcatcc ttacggcgcg tgttttcacg atattgagga
    19681 aaaactaagc acagggctga ttgaatggct gcgttgtcaa aatacggata cggttattat
    19741 cggtgggtta gctacggatt attgtgttaa aacaacggtt ttgcagttac tcaaaggcgg
    19801 tcgttggcag gttgtcgtca atgaagcggc ttgtcggggt attgcgccgg aaaccatcga
    19861 aacagcatgg caggaaatgc attctgccgg ggcaatcatc ttaaaaaacg ctgatgaaat
    19921 aaataaatat attaataatc aataagttaa aattgtttca cgtgaaaccc ccttcctaaa
    19981 tatgaaaatt ttgcttgtcc gcttgtctag tatgggcgat ttaattcaca ctttgcccgc
    20041 aatcgaagat ttggcgcgac aatgtcctga tgtagaactg cattggctat gtgaggctgg
    20101 atttgcagat attgcgcgcc tgcatccgtt tgtaaaaaaa atccatgtga tgaaatggcg
    20161 gcaatggcgc aaacatctct ttcgggctga aacttggcgg gaaatgggtc atctgaaaca
    20221 gactttgcgg caggaagtat ttgatttcgt attggacagt caaggtctga ttaaaagcgc
    20281 gtgtttcgct aaaatggcaa aatccccgat ttgtggtttg gataaaaaca gtgcgcgcga
    20341 gggatgggct gctttggcgt atgtaaaaac atacgctgta ccgaagggaa aaaatgccgt
    20401 ttggcgcaac cgtgaactgt ttgcccaagt atttgggtat gtaatgccgg aaacgcaggt
    20461 atttggcttg actgttcctg aagcaggccg tctgaaaaat ttagcgcagc cgtattatgc
    20521 ggctttgcat gcgaccagtc gggacagtaa gttatggcct gtggaaaact ggcggtcgtt
    20581 gctgcaaaag ttgaatgaag aacagcaatg caatatttac ctgccttggg gaaatgaaga
    20641 tgaaaaaacg cgtgccaaac aaattgcaga cggactgccg tttgctattg tgtgcgacaa
    20701 aataaattta ttgcaggcag cgtatctgct gaaatacgcg gtcggaattg tcggcgtgga
    20761 taccggtttg ctgcatttgg caaatgcctt ggaaaaacct gtggtcggca tttataccga
    20821 taccgatccg attaaaacag gcgttcaggt ttcgccaatt gcaaaaaatt tgggcaatat
    20881 cgggcagatt ccgaccgcag atttggttta tcaagcgctg atggattgtg ttgcagcaga
    20941 taaaggctaa agggtcgtct aaaactgata tggcggcatg atattttcca atttattaga
    21001 tacaggaatg tatatccgct agtctgagta aatgctttaa aaatggtata atcggcaagc
    21061 attatccgaa agatttttga atgaattcgt ttttaaggaa aacggatttg gttttatagg
    21121 gaagaaggtt tggtttcgct ggatggtgaa agcagcgttc tttttaggag ggttcaatga
    21181 aagcactggt cgcagtaaag cgcgtagtgg actacaacgt caaagttcgt gtaaaagccg
    21241 atggttcgga tgtggatatc ggcaatgtca aaatgtcgat gaatccgttt gacgaaatcg
    21301 ctgtggaaga agccgtccgt ttgaaagaag ccggaaaagt aagcgagatc gtagcggttt
    21361 ctttgggcga aaagaaatgc gaagaaacgt tgcgtacagc tttggcgatg ggtgccgacc
    21421 gtgcaattca tgttgaaacc gatgcgaaat tggagccgct ggcagttgcc aagttgctga
    21481 aagccgttgc ggacaaagaa aatccgcaaa ttttcttttt gggtaaacaa gcgattgatg
    21541 acgatgctaa tcaagtggcg caaatgctgg cagctttgtt gaatgcggcg caaggtacgt
    21601 ttgcttcaaa agtacaaatt gaaggtgatg aagtacagat tgtgcgcgaa attgatggcg
    21661 gcgaagaaac catagcattg aaattgcccg ctgttatcag tgcagatttg cgtttgaacg
    21721 agccgcgctt cgtcaaactc cccaatatta tggcggcgaa gaaaaaacct ttggaaaaac
    21781 tggctcctgc cgatttggtt gctgacattt cacctcgtct gaaaacggtg aaattcgccg
    21841 agcctaaagc gcgtcaggca ggcgtaaaag tagcaagcgt tgccgaatta gttgaaaaat
    21901 tgaaaaacga agccaaagtg atttgaggag actgaaatga gcgtattgat tattgccgaa
    21961 cacgacaaca aacagttgaa tcctgccact ttgcatgctg ttaccgctgc cgcaaaacta
    22021 ggcaaagtcg atttattggt tgccggaaac ggcgcatcgt ccgtcgtgga gttcgcgaag
    22081 caagtagcgg gagtggaaaa agttttggtt gcagatgctg cccattatgc tgaaggtttg
    22141 gctgaagagt tggctccgct ggttgtcaaa ttggcggcgg attaccgcta tgttgcagca
    22201 acggcaacca cattcggtaa aaaccttttg ccccgcgtag ccgccttatt agacgtaccg
    22261 caaatttctg atttgaccga gattgtagat aacacgactt ttgtacgtcc gatttatgca
    22321 ggtaatgcat ttgaaaccgt gcaagccaat gcggaaaaat tggtgctgac cttccgtgcg
    22381 acggcttttg acgcagcggc ggtgcaaggt ggtaatgctg aggtaattaa tattgaaaca
    22441 acccctgccc aaaacctgag tcgttttgtt aaccgtcagc tttcccattc cgatcgtccc
    22501 gaactgactc aggcaaaagt gattgtttct ggtggtcgtg cgttgggtag tgcggaaaaa
    22561 tttaatgaag tgctgacacc gttggcggat gttttaggtg cggcaatcgg tgcatcccgt
    22621 gcagcagttg atgccgaata tgcgccaaac gatgctcaag tcggacaaac cggtaaagta
    22681 gttgcgccgc aactctattt tgcaatcggt atttcaggtg cgattcaaca cgttgccggt
    22741 atgcaagaca gtaaggtgat tgttgcaatc aataaagatg ctgatgcgcc gattttcaat
    22801 gtagccgatt acggattggt tggcgattta tttgaaatcg ttccacaatt aacagaagca
    22861 ttgaaaaatt aatgtttcac gtgaaacttt cagacgactt tgttattaat gaggttgtct
    22921 gaaaactttt caacatgatt acgacttata aaaccattac ttccccgacg caggctgggt
    22981 ttaaagataa aggcagccgt tttatcgcat ttgcctatcc gattcggaca ttggctgatg
    23041 tgaaaaaata cctcgatccg ttaaaggaag agcaccataa agcacgacac tggtgttatg
    23101 cctatcgttt gggcgtggat ggtgtgcaat ttcgtgccaa cgatgatgga gagccatcag
    23161 gaagtgctgg acgaccaatt ttgggacaga ttgattcggt gggtatcacc gatgttttgg
    23221 tcgtggtcgt ccgctatttc ggtggtactt tattgggcgt ttcaggtctg atacatgcgt
    23281 acaaagaggc gacggctcag gcgttggcga ttgcggaagt gattgaaaag aatattgaaa
    23341 aaaccgtttg gctgaaatgt gaatatccat ttttgaatga agcgatacgc atcgccaaac
    23401 aatatcaggc ggatatattg gagcaggatt tgcagttgga ttgccgattg acggtaagtt
    23461 tgtcgttggc aaattatgaa gtctgtgttg cggcttggaa gaatacacgg cagattgaag
    23521 taaatacgga aaagcctttt gaatgaaagg tcgtctgaaa tgctttgtga tggtatttca
    23581 gacgacctct tcgctgacta atcttcttgt gtatatttgt ctaaggcatc gacgctggag
    23641 cgcaaatata accaagccag ttgatggaat tcgcccagcg cgttccatag cgcatcttca
    23701 ctcataatgc tgtattcgcc ttccgtacgc aaatccagtt ctaccccgtc ttcaatagcc
    23761 tgatgacacg cctgatactc gtgggtatag aaattgtcca tgtcgcgaat taaagtgacg
    23821 acatatttcc aacggcggat gtcttcttcc agttgcggta gtaaatgaca ccattcgcgg
    23881 tatttgcttt ggatttcatc aatacgtttt tgcatggttg cttgtccttt tttaatttat
    23941 ggataagttg aataggttgc agagtggaat gaagcggtct tttgtttgat tctactaaaa
    24001 tttcttcaga tgggataaaa gtccctttgt atcgagtttt cgttaaaagt acatatttgt
    24061 caaggagatg gtatgaaact gctggttatc ggtaatggcg gtcgcgaaca cgcgctggct
    24121 tggaaattgg cgcagtcgcc taaagtggaa acagtatttg ttgcgcctgg taatgccggt
    24181 acagcgattg aacccaagtt gcaaaacatc gacttgactg cgcatcagga tttgattgaa
    24241 ttcagtcgta aagaaaatat tgtttttacc gtcgtcggcc ctgaagcgcc tttggcggca
    24301 ggtgttgtgg atgatttccg tgccgcagga ctaaaaatat tcggtccgac acaatatgcg
    24361 gcgcagttgg aaagttccaa agatttcgcc aaagcattta tggcgaaata caacattccg
    24421 accgcgcaat atcaaacctt tgaaaacgcc gatgccgcac atgattacgt caatcagaaa
    24481 ggtgcgccta tcgttatcaa agccgatggt ttggcggcag gtaaaggcgt gattgtggcg
    24541 atgactttgg atgaagcgca tgctgcgatt gatgatatgc tgctggacaa caaaatgggc
    24601 aatgccggcg cgcgtgttgt gattgaagat ttcctgcaag gcgaagaagc gagttttatc
    24661 gtcatggttg atggcaataa tgtactgcct atggcaacca gccaagacca caagcgtctt
    24721 ttagacggcg acaaaggtct gaatacgggc ggtatgggtg cgtacagccc tgcgcctgtg
    24781 gtaacgcctg ttgtgtacga gcgcgcgatg aatgaaatta ttttgccgac cgtagcaggg
    24841 atgaaagcgg aggggcatga gttcaccggt ttcctgtacg caggtttgat gattgatcaa
    24901 agcggtgcac cctatacgat tgagtttaac tgccgtttcg gcgatcctga aacccagccg
    24961 attatgagcc gactgaacag cgacttatcg gatttggttg aagcggcaat agacggcaga
    25021 ctcgatagcg taaccgcgga atggagcccg caaactgccg tgggcgtggt actggcggcg
    25081 caaaattacc ccgaaacgcc caaaaaaggc gatgttattt ccggtctgga tgctgccaac
    25141 caagtaggca aagttttcca tgcaggtaca acggcaaacg agaaaggtga cgtattgacc
    25201 aacggcggac gcgtattgtg tgttgtggga ttgggcgaca atgtggcgca agcgaaagct
    25261 aaggcatatg gcgcgttgga aaaaatcagt ttcgacggga tgcaataccg taaagacatt
    25321 gccgataaag cgattaaccg ttaactagaa agaggatgat gccgtctgaa gccaagtatg
    25381 actgatgtgc ttcagacggt attttatatt atgttatttc cgagaattat cgcagcatca
    25441 gcgcaacgta agttaagcgt ttatttgaaa aaaggcggtt tggtcgctta tccgaccgaa
    25501 tcttgttatg gcttggggtg tcttccgaca ttagccaaag cactcggtaa gttggcgcat
    25561 ttgaaaaaaa gaccgcaaca caagggtatg attgtcatcg ggaatcaatt tgaacaattg
    25621 cagcctttac ttcaaatgcc gtctgaaaat cttcaggata tgcttagaaa agaatggcct
    25681 gcccctaaaa cgttcctatt atccgccaaa tcctgtgtct tacctgagtt gcgcgggaaa
    25741 cagcgcagca agttggcggt cagggttccc gcccatgtag gtgcgcgccg cttgtgtcag
    25801 gctttgcaaa cgcctttggt ctcgacttcg tgcaaccgcg caggcaaacg cgcgtgtcgg
    25861 acggagaggg aagtcagaag gcaattcgga cgcgatgtgt ggattgttgg tgggagaatc
    25921 ggcaggcaga aatcgccgag tcagattatt gacggggaaa caggtaaacg tttgcgttag
    25981 atatgggtac ttgaatgaaa acttttttgc atacacaaag aaaaaatttt ggggctgtac
    26041 tagattagcc ctaaatccca caccaatcct gtaggatttt tagctgccgg gacagtgtgc
    26101 cgaagttaaa tcgaaattcg cattctttca agaacagcgg gaaagatttg cgatcgattc
    26161 cattgtattt tcgcaagaca cgttttgcct gattccaaaa attctcaatg ccgttaat
//
LOCUS       DAXHPV010000009        25710 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.009, whole genome shotgun sequence.
ACCESSION   DAXHPV010000009 DAXHPV010000000
VERSION     DAXHPV010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 25710)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25710)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25710
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.009"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            39..914
                     /locus_tag="ACFM6C_000256"
     CDS             39..914
                     /locus_tag="ACFM6C_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HFC6157774.1"
                     /translation="MFGFRLSGGKGILQRSQVALVVTESTGGLEIPAAKAIRRAGIAV
                     IIANPRQTHQFAQSQPLTKTDAKDAKMPAFFAQMTAQKEDSQTMPYQPPTEAEEVLEA
                     LVNRRNQPADMRTAEKNRLHQVHETQVGSVKQLIAHFDRLIDELDKQIDDHTHTHFDG
                     KAQVAEQIKGIGSITTATLMAMLPELGRLSHKRIASLAGIAPHPRESEETKFKSRCFG
                     GRSAVLKALYMATVAATRFEPLIRDFYQRLPSEGKPYKVAVTACMRKLLTISNARMRD
                     YFAENGITENGIRTA"
     gene            962..1528
                     /locus_tag="ACFM6C_000257"
                     /pseudo
     CDS             962..1528
                     /locus_tag="ACFM6C_000257"
                     /inference="COORDINATES: protein motif:HMM:NF017727.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NnrS family protein"
     gene            1608..2036
                     /locus_tag="ACFM6C_000258"
     CDS             1608..2036
                     /locus_tag="ACFM6C_000258"
                     /inference="COORDINATES: protein motif:HMM:NF017727.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NnrS family protein"
                     /protein_id="HFC6157775.1"
                     /translation="MPSCANCTITNSFANTTSALYYLLQLFAAAGYLWTGAAKLQNLP
                     ASAPLHLITLGGMTGGVMMVWLTAGLWHSGFTKLDYPKLCRIAIPILFAAAVSRAVLM
                     NVNPIFFITIPAILTASVFVLYLFTFVPIFRANAFTDDPE"
     gene            complement(2083..4272)
                     /locus_tag="ACFM6C_000259"
     CDS             complement(2083..4272)
                     /locus_tag="ACFM6C_000259"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HFC6157776.1"
                     /translation="MIYHRIAVNVPLSDGLLTYSHSDPLPPGTRVLVPFRNKTVVGMV
                     WETDIAPDMDAARILSVQTAFSDEPPLPESWRDLLAFTSRYYHYPTGQAVFAALPQGL
                     KETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGEMTMAALKQVNAQA
                     VKLIENWAEQGWIETTEAAKPVLRSYHGQASHSEFVLNANQQKASDAIQTALGRFRPF
                     LLYGITGSGKTEVYFDAMAKVLAQGRQVLFLLPEINLTPQLLKRVENRFADVPTAVLH
                     SQMAAGKRTQDYLRAMLGQAKLVIGTRLAVFTPMDDVGLIVVDEEHDGSFKQDNELRY
                     HARDLAVWRAKQSGCPVVLGSATPSLESWHKAQSGAYRLLQLTERAHTAAQLPQVDIL
                     NVGRLKLDNGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCGDCGHTFGCPNCSA
                     KMVLHQRARQLRCHHCDHREPIPYKCPDCGNQDLTAVGHGTQRVEETLRAFLPKAAVV
                     RVDRDSTAHKNDWADLYRRIADNEIDILVGTQMLAKGHDFARLNLVIVLNADGSLYSA
                     DFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYAVFAENELNE
                     RQMFAMPPFGFQIAVRADALRVADAMEFLNAAKETLAPLLPASVSQFGAAPMLMVRLA
                     ERERAQVFLESTSRQDLHRAVSLWVQVLQQNRDGKIRWSVDVDPQET"
     gene            4411..5193
                     /locus_tag="ACFM6C_000260"
     CDS             4411..5193
                     /locus_tag="ACFM6C_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbC family protein"
                     /protein_id="HFC6157777.1"
                     /translation="MKTKLIKILTPFTVLPLLACGQTPVSNANAEPAAKAESAGKSVA
                     ASLKARLEKTYSAQDLKVLSVSETPVKGIYEVVVSGRQIIYTDAEGGYMFVGELINID
                     TRKNLTEERAADLNKIDFASLPLDKAIKEVRGNGKLKVAVFSDPDCPFCKRLEHEFEK
                     MTDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVGGSICDNPVA
                     ETTSLGEQFGFNGTPTLVFPNGRSQSGYSPMPQLEEIIRKNQ"
     gene            complement(5606..7540)
                     /locus_tag="ACFM6C_000261"
     CDS             complement(5606..7540)
                     /locus_tag="ACFM6C_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MacB family efflux pump subunit"
                     /protein_id="HFC6157778.1"
                     /translation="MSLIECKNINRYFGSGENRVHILKDISLSIEKGDFVAIIGQSGS
                     GKSTLMNILGCLDTAGSGSYRIDGIETAKMQPDELAALRRERFGFIFQRYNLLSSLTA
                     RDNVALPAVYMGAGGKERSARADKLLQDLGLASKEGNKPGELSGGQQQRVSIARALMN
                     GGEIIFADEPTGALDTASGKNVMEIIHKLHEAGHTVIMVTHDPGIAANANRVIEIRDG
                     EIISDTSKNPEIPASNVGRIQEKASWSFYYDQFVEAFRMSVQAVLAHKMRSLLTMLGI
                     IIGIASVVSVVALGNGSQKKILEDISSMGTNTISIFPGRGFGDRRSGRIKTLTIDDAK
                     IIAKQSYVASATPMTSSGGTLTYRNTDLTASLYGVGEQYFDVRGLKLETGRLFDENDV
                     KEDAQVVVIDQNVKDKLFADSDPLGKTILFRKRPLTVIGVMKKDENAFGNSDVLMLWS
                     PYTTVMHQITGESHTNSITVKIKDNANTQVAEKGLTDLLKARHGTEDFFMNNSDSIRQ
                     IVESTTGTMKLLISSIALISLVVGGIGVMNIMLVSVTERTKEIGIRMAIGARRGNILQ
                     QFLIEAVLICVIGGLVGVGLSAAVSLVFNHFVTDFPMDISAMSVIGAVACSTGIGIAF
                     GFMPANKAAKLNPIDALAQD"
     gene            complement(7606..8784)
                     /locus_tag="ACFM6C_000262"
     CDS             complement(7606..8784)
                     /locus_tag="ACFM6C_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MacA family efflux pump subunit"
                     /protein_id="HFC6157779.1"
                     /translation="MAKMMKWAAVAAVAAAAVWGGWSYLKPEPQAAYITEAVRRGDIS
                     RTVSATGEISPFNLVSVGAQASGQIKKLYVKLGQQVKKGDLIAEINSTSQTNTLNTEK
                     SKLETYQAKLVSAQIALGSAEKKYKRQAALWKDDATAKEDLESAQDALAAAKANVAEL
                     KALIRQSKISINTAESELGYTRITATMDGTVVAILVEEGQTVNAAQSTPTIVQLANLD
                     MMLNKMQIAEGDITKVKAGQDISFTILSEPDTPIKAKLDSVDPGLTTMSSGGYNSSTD
                     TASNAVYYYARSFVPNPDGKLATGMTTQNTVEIDGVKNVLIIPSLTVKNRGGKAFVRV
                     LGADGKAAEREIWTGMRDSMNTEVKSGLKEGDKVVISEITAAEQQESGERALGGPPRR
                     "
     gene            9010..9399
                     /locus_tag="ACFM6C_000263"
     CDS             9010..9399
                     /locus_tag="ACFM6C_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilin protein"
                     /protein_id="HFC6157780.1"
                     /translation="MKNVQKGFTLLELMIAVAILGILTLITYPSYKTYIRRIRLSEVK
                     STLLMNAQTMERYYRQKGTFENYDKNKLKQNKYFNVTLSKVSPDHFTLQADPNPMTNE
                     GETCVVTLNDGGTLSAAGSGQDCPDFD"
     gene            9684..10730
                     /gene="adhP"
                     /locus_tag="ACFM6C_000264"
     CDS             9684..10730
                     /gene="adhP"
                     /locus_tag="ACFM6C_000264"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase AdhP"
                     /protein_id="HFC6157781.1"
                     /translation="MKMQAVVVNKNVAGDVEIVEREVRPLEYGEALVEVEYCGVCHTD
                     LHVAAGDYGEKPGRVLGHEGIGLVKEVADGVKNLKVGDRVSIAWLFQSCGSCEYCNTG
                     RETLCRSVLNAGYTADGGMATHCIVSADYAVKVPEGLDPAQASSITCAGVTTYKAIKV
                     SSVRPGQWIAIYGAGGLGNLGVQYAKKVFGAHVVAIDINDDKLAFAKETGADLVVNAA
                     KEDAAKVIQEKTGGAHAAVVTAVSAAAFNSAVNCVRAGGRVVAIGLPPESMDLSIPRL
                     VLDGIEVVGSLVGTRKDLEEAFQFGAEGLVVPKVQLRALDEAPAIFQEMREGKITGRM
                     VIDMKKECGCGHHH"
     gene            complement(10895..14380)
                     /gene="smc"
                     /locus_tag="ACFM6C_000265"
     CDS             complement(10895..14380)
                     /gene="smc"
                     /locus_tag="ACFM6C_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HFC6157782.1"
                     /translation="MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAV
                     RWVLGEASAKQLRGESMQDVIFNGAATRRPAPRASVELVFDNSDHSLQGAWGQYAEVS
                     IKRQLTRQGESTYFINNQTVRRRDITDLFLGTGVGARGYAVIEQGMISRIIEARPEEL
                     RAYIEEAAGVSKYKERRKETEGRLKDTREHLQRLGDLQNELARQVEKLEKQAETAERY
                     KSLTAQLNRQQDLLDYAQWQQSLAAADKATAQHQSLQAQQDETAAQVQALNDEVHALQ
                     TAEQSQQQAVHELSNKRGVLREQIARLEEQIRHQQNLHQRIERDKQAAQAQMQRIHQE
                     QQQIRVQLEENELQAEEKQTELAEWAMQVAEHEERLPELEEAQATLNAAFQTRQDEAN
                     RIRRELALKQQQLAHAEQTIAKHEERKGRLKQENQALNLPDEAETAAAQEAAALLQSR
                     QEHYEEQIIAAEEALHAAREAFQTASNRFQSLKQQHITLQAQQQALSQILSQQQEAAD
                     FWQATDHAVAPQLWQHITAPAEWQHALSVILAERLHARAVPQGFVPPEPLPQGQAAWL
                     SDDLSGGIKKSLPVQALLNQIQAQPPFQTALHYWLDGVLCAPDLSYALAHQNDLGAHQ
                     IWLTPEGHQVDKVSVLLYAKPAQESLIAQKAHLDGIASELDNLAPELSAAEAAFKQAE
                     AAVRSSEVQHKNLMQQQQQHTRQYSQAQQRAAELLARTNQGQIRREHIERELAQLAEE
                     QTVLQHTSDGLSDDIAILQEAAAELEHQQQTAAHSRQEQQGRLKQAQLALLEANRQYG
                     LAEVAVHKLNQQKQNYRQQIAQLEQQTLDWQERQQELALAYETEFQNDEQHIKLEELS
                     EAVQTLDEEYIVVQEKLAQIQEQGREQYAKVQTLQTKLPQLQAATQTALLQQQEALIN
                     AKRYHQNLTERAADLDALEALAKESPKVLNSSIGSLSQQIEALGAVNLAALQELEEAR
                     ERDGYYRSQSEDVQAAITLLEEAIAQIDDKTKARFKETFDAVNGKVQTFFPTLFGGGE
                     ATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSLNPAPFCL
                     LDEVDAPLDDANTSRFCNLVKEMSAQTQFLYISHNRLTMEMAEQLVGVTMQEKGVSRV
                     VAVDIKQALEMAEAV"
     gene            14382..14591
                     /locus_tag="ACFM6C_000266"
     CDS             14382..14591
                     /locus_tag="ACFM6C_000266"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157783.1"
                     /translation="MVGKNKKEAYFNGNPAAPPHILPAKPYRIPHPRCRLKPSDGIFN
                     APNPGSANADAWRGICRIAPPPGAL"
     gene            14628..15362
                     /gene="lpxH"
                     /locus_tag="ACFM6C_000267"
     CDS             14628..15362
                     /gene="lpxH"
                     /locus_tag="ACFM6C_000267"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008758 - UDP-2,3-diacylglucosamine
                     hydrolase activity [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HFC6157784.1"
                     /translation="MKPAYFISDLHLSEKQPELTALLLRFLRSSAARQARAVYILGDL
                     FDFWVGDDEVSELNTSVAREIGKLSDKGVAVFFVRGNRDFLIGRDFCRQAGMTLLPDY
                     SVLDLFGCKTLICHGDTLCTDDRAYLRFRRIVHCRRLQKLFLMLPLKWRTRLAAKIRR
                     VSKMEKQVKPADIMDVNAAFTARQVRAFGAERLIHGHTHREHIHHENGFTRIVLGDWH
                     NDYASILRVDGDGAVFVPLENAENAV"
     gene            15618..17204
                     /locus_tag="ACFM6C_000268"
     CDS             15618..17204
                     /locus_tag="ACFM6C_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HFC6157785.1"
                     /translation="MALFLSIFPIVLLIWLMVKKNSMPSYVALPITAVLIYAIKLFYF
                     DDAGMLLNATAASGLVKTLTPITVIFGAIMFNRMMETTGCIDVIRKWLATISPNPVAQ
                     LMIIGWAFAFMIEGASGFGTPAAIAAPILMSLGFNPLKVAIFTLVMNSVPVSFGAVGT
                     PTWFGFAPLNLSAEDILAIGRQTGVMHFFAGFVIPVIGLGFIVPWSEIRKNLGFVAIA
                     VFSCTIPYVALAMVNEEFPSLVAGAIGLMVSVFAANQGWGLSKDHAKDPNAEKVPFAQ
                     VAKALAPLGMLIGMLVVTRIKQLGIKGILTSKEEWFSFQLPFDLSKITVSDSLTITFG
                     NIFGQDVSASYQTLYVPAWIPFVLTVWICILLYKTKFKDAWTIYAVTFNQTKKPLLAL
                     MGALIMVQLMLVGGDNSMVKIIGKEFAAMAGEHWVYFSPYLGAIGAFFSGSNTVSNLT
                     FGPIQQQIALDTGLSVTLILALQSVGGAMGNMVCLNNIIAVCTVLDVKNSEGAIIKKT
                     VIPMAIYGVIAVVAAMIFFL"
     gene            complement(17373..17576)
                     /locus_tag="ACFM6C_000269"
     CDS             complement(17373..17576)
                     /locus_tag="ACFM6C_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-finger domain-containing protein"
                     /protein_id="HFC6157786.1"
                     /translation="MDNLNLQEISVLPENLPLYCSGPGNEQWNGHPRVFLPLGEGESG
                     SVACPYCGTRYRLDGKMPHHHYA"
     gene            17692..18189
                     /locus_tag="ACFM6C_000270"
     CDS             17692..18189
                     /locus_tag="ACFM6C_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMP19 family protein"
                     /protein_id="HFC6157787.1"
                     /translation="MTALTLPEDIRQQEPSVLLYTLVSAYLEHTAQTGDESLSCLSDD
                     QHTLTAFCYLDSQVEEGGFVQLIASGYGEYIFRNPLADSLRRWKIKITPKIIDKAKSL
                     YEKHGETIETLADGGADIESLRKQFPDFEEWDGAYYEAAEQDLPLLAEHIQSNWETFA
                     HIGQA"
     gene            18271..19464
                     /locus_tag="ACFM6C_000271"
     CDS             18271..19464
                     /locus_tag="ACFM6C_000271"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid aminotransferase"
                     /protein_id="HFC6157788.1"
                     /translation="MFFKHIEAAPADPILGLGEAFKAETRPEKVNLGIGVYKDASGAT
                     PLVKAVKEAEKRLLESETTKNYLTIDGVADYNAQTQILLFGKDHEIIASRRAKTAQSL
                     GGTGALRIAAEFAKRQLNAQTIWISNPTWPNHNAIAKAVGIQDKPYRYYDAAKHGLDW
                     DGMIEDLSQAQKGDIVLLHGCCHNPTGIDPTPEQWETLAKLSAEKGWLPLFDFAYQGF
                     GNGLEEDAYGLRVFLKHNTELLIASSYSKNFGMYNERVGAFTLVAEDEETAARAHSQV
                     KTIIRTLYSNPASHGANTIALVLKNDDLKAQWIAELDEMRGRIKAMRQKFVELLKAKG
                     ASQDFDFIIEQNGMFSFSGLTPEQVDRLKNEFAIYAVRSGRINVAGITDDNINYLCES
                     IVKVL"
     gene            complement(19868..20803)
                     /gene="hemC"
                     /locus_tag="ACFM6C_000272"
     CDS             complement(19868..20803)
                     /gene="hemC"
                     /locus_tag="ACFM6C_000272"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HFC6157789.1"
                     /translation="MNPKKLVIASRESLLAMWQAKHIQGRLKALYPDCEVEILGMTTR
                     GDQILDKTLSKVGGKGLFVKELEQALYDGRADLAVHSIKDVPMDLPEGFALVAIGERA
                     NPFDAFVSNQYARLEEMPEGAVVGTSSLRREAQLRARYPHLFIKPLRGNVQTRLSKLD
                     NGEYDAIILAAAGLQRLKLDGRIRMILSESDSLPAAGQGALGIEIAGHREDLYEVLKP
                     LNHGVTNACVTAERALARALGGSCQVPLAAYCTEENGLLTLRGLVGHPDGSVVLRADA
                     QAPAEYADALGRAVAKKLADDGARELIGAVLNTEN"
     gene            20922..21437
                     /gene="ybeY"
                     /locus_tag="ACFM6C_000273"
     CDS             20922..21437
                     /gene="ybeY"
                     /locus_tag="ACFM6C_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HFC6157790.1"
                     /translation="MKRTKKYPFLTLQRQRFHLNFENASSAVGIPAERDFYRWAWSAL
                     KNKYRRADISLILLDEEEARAYNRDYRGKDYATNVLSFALNEGEILPCQVSEKLYGDL
                     IICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMLAA
                     GFPNPYQEDEY"
     gene            21439..22263
                     /locus_tag="ACFM6C_000274"
     CDS             21439..22263
                     /locus_tag="ACFM6C_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HFC6157791.1"
                     /translation="MDGAQPKTNFFERLIARLAREPDSAEDVLNLLRQAHEQEVFDAD
                     TLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKD
                     EVLGILHAKDLLKYMFNPEQFHLKSVLRPAVFVPEGKSLTALLKEFREQRNHMAIVID
                     EYGGTSGLVTFEDIIEQIVGEIEDEFDEDDSADNIHAVSSERWRIHAATEIKDINTFF
                     GTEYSSEEADTIGGLVIQELGHLPVRGEKVLIGGLQFTVARADNRRLHTLMATRVK"
     gene            complement(22393..23772)
                     /gene="nhaC"
                     /locus_tag="ACFM6C_000275"
     CDS             complement(22393..23772)
                     /gene="nhaC"
                     /locus_tag="ACFM6C_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HFC6157792.1"
                     /translation="MFAFKSLLDMPRGEALAVVVALIAAMGYTIISLEWLPHMSIIAA
                     IVVLILYGLARGLKYNDMQQGMIGALNQGMGAIYLFFFIGLMVSALMMSGAIPTLMYY
                     GFGLISPTYFYFSAFALCSVIGVSIGSSLTTCATVGVAFMGMAAAFHADMAMTAGAIV
                     SGAFFGDKMSPLSDTTGISASIVGIDLFEHIKNMMYTTIPAWLISAALMLWLLPNVAA
                     QDLNSVESFRSQLEATGLVHGYSLIPFALLVVLALMRVNAVVAMLFTVIAAVAVTYLH
                     STPDLRQLGAWFYGGYKLEGEAFKDVVKLISRGGLESMFFTQTIVILGMSLGGLLFAL
                     GAIPSLLDAVRSFLTNAGRATFSVAMTSVGVNFLIGEQYLSILLSGETFKPVYDRLGL
                     HSRNLSRTLEDAGTVINPLVPWSVCGVFISHALGVPVWEYLPYAFFCYLSLALTLLFG
                     WTGLTLSKK"
     gene            complement(24063..25286)
                     /locus_tag="ACFM6C_000276"
     CDS             complement(24063..25286)
                     /locus_tag="ACFM6C_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar MFS transporter"
                     /protein_id="HFC6157793.1"
                     /translation="MSAQSQNNHTSPLVVLTTLFFMMGFITCMNDILIPHLKEIFDLS
                     YVQAMLIQFCFFTAYAVMSIPMGAFVGKVGYKNGVIGGFLLTAVGCLLFYPAAGSHSY
                     AVFLGALFILASGVTLLQVAGNPYVTLLAKPGKESATLTLVQAFNALGTTIAPQIGAF
                     LILADATQTVSKAEQISSVQIPYLGLAGLLIILAVFVKMIRLPDARKIAAEESAHNHD
                     GKTGVWQYKHLVFGTAGIFCYVGAEVSIGSLMVNVLGYLKGLDHASAAHYLSFYWGGA
                     MVGRFLGSAVMAKFAPNRYLAFNASAAVVLLAVAMATGSGNADVAMWSLLAIGFFNSI
                     MFPTIFSLATKGLGKFTNAASGVLCTAIVGGAVVPVVQGWVADTYTLMSSFVVSVICY
                     LYIVFFAVYGYRADK"
BASE COUNT         5932 a         7310 c         6638 g         5830 t
ORIGIN      
        1 aattaggcgg tatttggggc gaaaacagct gaaaacctgt gtttgggttt cggctgtcgg
       61 gagggaaagg aattttgcaa aggtctcagg tcgccctcgt cgtgacggaa agtactggcg
      121 gtctcgaaat ccccgccgcc aaagccatcc gccgagcagg catagccgtg attatcgcca
      181 acccgcgtca gacgcatcag tttgcccaat cgcagccgct gaccaaaacc gacgccaaag
      241 atgccaaaat gcccgccttc ttcgcacaga tgacggcaca gaaagaagat tcgcaaacca
      301 tgccctacca accgcccacc gaagcggaag aagtgttgga agccttggtt aaccgccgca
      361 accaaccggc ggatatgcgg actgccgaga aaaaccgtct gcatcaggtt cacgaaacgc
      421 aagtcggaag cgtcaaacaa ctgattgccc attttgaccg gctgattgac gaattggaca
      481 aacaaatcga cgaccacacc cacacgcatt ttgacggcaa agcccaagtg gcggagcaaa
      541 tcaaaggcat cggttcgata acgacggcta cgctgatggc gatgctgccc gaattggggc
      601 ggctgtcgca caaacggata gcgagtttgg ccggcattgc cccgcacccg agggagagcg
      661 aggaaaccaa attcaaaagc cgctgctttg gcggaaggtc tgcggtgctt aaggcactgt
      721 atatggctac cgtggcagcg acacgttttg aaccgcttat tcgggatttc taccaacgcc
      781 tgccgtccga gggtaagccg tataaggttg ccgttacggc atgtatgcgc aaactgctga
      841 cgatatcgaa tgcccggatg cgtgattatt ttgccgaaaa cggtatcacc gaaaacggta
      901 tccggacggc ttgatttgag ttttggtatt tttacccggc ggggtgaaaa atactgttgc
      961 tatgcgcccg tttttcgtcg gcgcgacagt gcttgccata ctcggcgcgt tggtgttttt
     1021 catcagcccc gatgccgtcg tcctgcaccg ccaaatcttc ttagaactca tgctacctgc
     1081 ggcatacggc ggttttttga ctgccgcttt gttggactgg acgggttttt cgggcaacct
     1141 gaaacctgtc gcgactttga tggcggcatt attgcttgtt acggctgttt tattgccgtt
     1201 tttaccgcaa cttgccgcat ttttcgtcgc cgcctattgg ctggtgttgc tgctgttctg
     1261 cgcacggctg atttggctag accgaaacac cgacaacttc gccctcttaa tgctgcttgc
     1321 cgcgttcacc gtttttcaga cggcatacgc tgcaaccggc gatttgaacc tgttgcgcgc
     1381 gcaagtgcat ttgaatatgg cggcggtgat gttcgtatcc gtgcgcgtca gtattctttt
     1441 gggcacggaa gccctgaaag aatgccgtct gaaagaccct gtttttattc caaatatcgt
     1501 ttataaaaac atcgccatta ctttcctgct cttgcacgcc gccgccgaac tttggctgcc
     1561 tgctcaaacc gccggtttta ctgcgcttgc cgtcggcttc atcctgcttg ccaagctgcg
     1621 cgaactgcac catcacgaac tccttcgcaa acactacgtc cgcactatat tacctgctcc
     1681 aactttttgc cgccgcaggc tatttgtgga caggcgcggc gaaactgcaa aacctgcccg
     1741 cctccgcgcc cctgcacctg attaccctcg gcggtatgac gggcggcgtg atgatggtgt
     1801 ggctgactgc cggactgtgg cacagcggct ttaccaaact tgactacccc aaactctgcc
     1861 gcatcgccat ccccattctt ttcgccgccg ccgtttcgcg cgctgtttta atgaacgtga
     1921 acccgatatt cttcatcacc atccccgcga ttctgaccgc ctccgtgttt gtgctttatc
     1981 tctttacgtt cgtacctatt tttcgggcga acgcgtttac agacgatccg gaataaaaat
     2041 gccgtctgaa acggttttca gacggcatca gattgccaat aatcaagtct cctgcggatc
     2101 gacatccacc gaccatctga ttttgccgtc gcggttttgc tgcaacacct gcacccacaa
     2161 actcacggcg cggtgcaaat cctgtcgaga tgtcgattcg aggaaaactt gcgcacgttc
     2221 gcgttcggca aggcgcacca tcagcatggg ggcggcgccg aactgggaaa cgcttgcggg
     2281 caaaagcggg gcgagggttt ctttggcggc gttgagaaat tccatcgcat cggcaacacg
     2341 cagcgcatcg gcgcggacag caatctgaaa accaaagggc ggcatggcga acatttgccg
     2401 ctcgttcaat tcgttttcgg cgaacacagc gtagtcctgc gctttgacgg cggcgaagac
     2461 gggatgttcg ggcagttggg tctgtatcaa caccttgccg ggtttgtcgg cacgccccgc
     2521 cctgccggac acttgcatca gctcggcaaa cagcctttct ggcgcgcgaa agtccgcgct
     2581 gtacaggctg ccgtcggcgt tcaacacgat aacaaggttg agccgcgcaa aatcatggcc
     2641 tttggcgagc atctgcgtgc cgaccagaat gtcgatttcg ttgtcggcga tgcggcggta
     2701 caaatccgcc cagtcatttt tgtgcgcggt gctgtccctg tcgacgcgga cgacggcggc
     2761 cttgggcagg aaggcacgca gggtttcttc gacgcgctgc gtgccgtggc cgacggcggt
     2821 caggtcttga ttgccgcagt cggggcattt gtacgggatg ggttcgcggt ggtcgcagtg
     2881 gtggcagcgc agttggcggg cgcgttggtg cagcaccatt ttggcggagc agttcgggca
     2941 gccgaaggta tggccgcagt cgccgcaaaa cagcgcgggc gcgaaaccgc gacggttgag
     3001 gtacaccagc gacataccgc ccgcttcaaa attctgtttc aaaagctgca aggcttgcgg
     3061 cgagaaaccg ttgtcgagtt tcagacggcc tacgttgaga atgtccactt gcggcagttg
     3121 cgcggcggta tgggcgcgtt cggtcagttg cagcaggcgg tacgcgccac tttgcgcctt
     3181 gtgccagctc tccaagctgg gcgtggcact gcccaacacg acggggcagc cgctctgctt
     3241 cgcccgccac accgccaaat cgcgggcatg atagcgcaat tcgttgtctt gtttgaacga
     3301 gccgtcgtgt tcctcatcga ccacaatcag cccgacatca tccatcggcg tgaacactgc
     3361 cagccgcgtg ccgatcacca gcttcgcctg ccctaacatc gcgcgcagat aatcctgcgt
     3421 gcgcttgcct gccgccatct gactgtgcaa cacggcggtc ggcacgtcgg caaaacggtt
     3481 ttccacccgc ttcaaaagct gcggcgtgag gttgatttcg ggcaacagaa acaacacctg
     3541 ccgcccctga gccaacactt tcgccatcgc atcgaaatac acttcggtct tgccgctgcc
     3601 ggtgatgccg tacagcagaa acggccggaa gcgtcccaat gccgtctgaa tggcatcgga
     3661 agctttctgc tggttggcat tcaacacaaa ttcagagtgc gaagcctgcc cgtggtacga
     3721 ccttaaaacg ggtttcgccg cttccgtcgt ttcaatccaa ccctgttccg cccaattttc
     3781 gattaatttc accgcctgcg cgtttacctg cttcaacgct gccatcgtca tttcgcccga
     3841 cagcagcgcg tcccacaaag ccgctttttt gttgaaccgc gccggcggcg gcgtttgcgc
     3901 cctgcctgct tcgtttaaag cataaaacaa tggcggctgc ggcatttcca ccgcgcgcgt
     3961 ttccttcaaa ccctgcggca gtgcggcaaa tactgcctgc cccgtcggat agtggtaata
     4021 acgcgacgta aacgccaaca aatcacgcca gctttcgggc agcggcggct cgtccgaaaa
     4081 ggccgtctga acgctcaaaa tccgcgccgc atccatatcg ggcgcaatat ccgtttccca
     4141 caccatcccg accacggttt tattgcggaa aggcacaagc acccgcgttc ccggaggaag
     4201 cggatcggaa tgggaataag tcaaaaggcc gtctgaaagc ggcacgttta cggcgatgcg
     4261 gtggtagatc atacaggcag gcaaatcatt tttttgcgta ttttaacagg cggaagctat
     4321 tttcagacga taaattgagc ctaggcgcaa tgcaggcgca acagagattt gatacaattc
     4381 cgcctttcca acacgcgcaa tcatctttat atgaaaacca agttaatcaa aatcttgacc
     4441 ccctttaccg tcctcccgct gctggcttgc gggcaaacgc ccgtttccaa tgccaacgcc
     4501 gaacccgccg ccaaagccga gtccgccggc aaatccgttg ccgcctcttt gaaagcgcgt
     4561 ttggaaaaaa cctattccgc ccaagatttg aaagtgttga gcgttagcga aacaccggtc
     4621 aaaggcattt acgaagtcgt cgtcagcggc agacagatta tctacaccga tgccgaaggc
     4681 ggctatatgt tcgtcggcga actcatcaac atcgacacgc gcaaaaacct gaccgaagaa
     4741 cgcgccgccg atttgaacaa aatcgacttc gcctccctgc ctttggacaa agccatcaaa
     4801 gaagtgcgcg gcaacggcaa gctgaaagtc gccgtcttct ccgaccccga ttgtccgttc
     4861 tgcaaacgct tggaacacga gtttgaaaaa atgaccgacg tgacggttta cagctttatg
     4921 atgcccattg ccggcctgca ccccgatgcc gcgcgcaagg cgcaaatctt atggtgtcag
     4981 cccgaccgcg ccaaagcgtg gacggattgg atgcgtaaag gcaaattccc ggtcggcggc
     5041 agcatctgcg acaatcccgt cgcggaaacc acttccttgg gcgaacaatt cggcttcaac
     5101 ggcacgccga ccctcgtctt ccccaacggg cgcagccaaa gcggctacag cccgatgccc
     5161 caactggagg aaatcatccg caaaaatcaa taatccatcc gcaaaaaagg cttggaaaat
     5221 tccaagcctt ttttgcggga aatgccgcct gaaaaccaat ccgccctgaa agttagcaag
     5281 ccaacaaaca catcctaacc cattgaatga ttgaaaataa taaattgaac aatacgaagc
     5341 cccgccgccg ttcccacgcg ggcgggaatc tggaatattg agttaccgtg atttatccga
     5401 aacaagcaaa gccgaacgaa ccgaattccc gtctttacgg gaatgacggg actcgagcgt
     5461 tgtgtgcaat catcgaaccc ccgccgccgt cattcccacg caagtgggaa tctggaacgt
     5521 agaatctaag aaaccgtttt tatccaataa gtttctgctc caaaatgacc ggtcctgcag
     5581 cttcagacgg catctttgtc caacctcaat cctgtgccaa tgcgtctatc ggattgagtt
     5641 tggctgcttt attggcaggc ataaagccga acgcgatgcc gattccggtc gaacaggcga
     5701 ccgcgccgat gacggacatg gcggaaatgt ccatcgggaa gtcggttaca aaatgattga
     5761 acacgaggct gacggcggcg gacaaaccca cgccgaccaa accgccgatg acgcagatta
     5821 acaccgcctc aatcaaaaac tgctgcaaaa tattgccgcg ccgcgcgccg attgccatcc
     5881 gtatgccgat ttctttggtg cgctcggtaa cggacaccag catgatgttc atcacgccga
     5941 tgccgccgac taccaatgaa atcagggcga tggaggaaat cagcagcttc atcgtaccgg
     6001 tggtgctttc gactatctgc ctgatgctgt cgctgttgtt catgaagaaa tcttccgtgc
     6061 cgtgccgcgc tttgagcaga tcggtcagcc ctttttcggc aacctgggta ttggcattgt
     6121 ctttgatttt gacggtgatg gagttggtgt ggctctcgcc tgtgatttgg tgcatcaccg
     6181 tcgtataggg cgaccaaagc atcagcacgt cggaattgcc gaaagcgttt tcgtcttttt
     6241 tcatcacgcc gatgacggtc aaggggcgtt tcctgaacaa aatggtttta cccaacggat
     6301 ccgagtccgc aaagagtttg tctttgacat tttggtcgat gacgacgacc tgcgcgtctt
     6361 ctttcacatc gttttcgtca aacagccgcc ccgtttccag cttcagtccg cgcacgtcga
     6421 aatattgttc gcccacgccg taaagcgagg cggtcaggtc ggtattgcgg taagtcagcg
     6481 tgccgccgct cgaagtcatg ggcgtggcgg aagcaacgta gctttgtttg gcgatgattt
     6541 ttgcgtcgtc tatggtcagg gttttaatcc tgccgctgcg cctgtcgcca aagccgcgcc
     6601 cggggaagat gctgatggtg ttcgtcccca tcgaactgat gtcttcgagg atttttttct
     6661 gcgaaccgtt gcccagtgcg acgacggaga caaccgaagc gataccgatg atgatgccga
     6721 gcatcgtcag aagcgaacgc attttgtgcg ccaatactgc ttgcaccgac attctgaagg
     6781 cttcgacaaa ctggtcgtaa taaaacgacc acgaggcttt ttcctgaatc ctcccgacat
     6841 tgcttgcggg gatttctgga tttttcgagg tgtcggaaat gatttcgccg tcccggattt
     6901 cgatgacgcg gttggcattg gcggcgatgc cggggtcgtg cgtgaccata atgacggtat
     6961 gcccggcttc gtgcagctta tggatgattt ccatcacgtt tttgccgctg gcggtatcga
     7021 gcgcgccggt cggctcgtcg gcgaagatga tttctccgcc gttcatcagg gcgcgggcga
     7081 tggagacgcg ctgctgctgt ccgcccgaga gttcgccggg cttgttgccc tctttgcttg
     7141 ccaaacccaa atcctgcaag agtttgtccg cccgcgcgga acgctctttg ccgcccgcgc
     7201 ccatatagac ggctggcagc gcgacgttat cccttgcggt cagcgagctt aagaggttgt
     7261 agcgttggaa gataaagccg aagcgttcgc ggcgcaatgc cgccagttcg tcaggctgca
     7321 ttttggcagt ttcgatgccg tcgattcggt acgaaccgga accggcggta tccaaacaac
     7381 cgagtatgtt catcagcgtg gacttgcccg aaccggactg cccgatgatg gcgacaaaat
     7441 cgcccttctc tatcgacagg ctgatgtctt tcaaaatatg gacgcggttc tcgccgctgc
     7501 cgaaatagcg gttgatgttt ttacattcga tcaagctcat aatattccgt aaatcaataa
     7561 caaatgccgt ctgaaaccgt ttccgtgttc agacggcata ttcgtttatc ggcgcggcgg
     7621 gccgcctagg gcgcgttcgc cgctttcctg ctgctcggcg gcggttattt cggagatgac
     7681 cactttatcc ccctctttca acccgctttt tacttcggta ttcatactgt ctctcatacc
     7741 ggtccagatt tcgcgttccg ccgccttgcc atccgcaccc aacacgcgca caaacgcctt
     7801 gccgccgcga tttttcacgg tcagcgacgg aataatcagc acatttttca cgccgtcgat
     7861 ttcaaccgta ttctgcgtcg tcatccccgt ggcgagtttg ccgtccggat tcggcacaaa
     7921 cgaacgggca taatagtaga ccgcattgga agccgtatcc gtactgctgt tgtaaccgcc
     7981 cgacgacatc gtggtcagcc cggggtcgac gctgtcgagc ttcgccttaa tcggcgtatc
     8041 cggttcggac aaaatcgtaa acgaaatatc ctgccccgcc ttcaccttgg taatatcgcc
     8101 ctcggcaatc tgcattttgt tcaacatcat atccagattc gccaattgga caatcgtcgg
     8161 cgtagactgc gccgcgttca cagtctgccc ctcttccacg agaatcgcca ccaccgtgcc
     8221 gtccatcgtc gcggtaatgc gcgtgtagcc caattccgac tcggcggtat tgatggaaat
     8281 tttgctctgt ctgattagag ccttcagctc ggcaacattg gctttggcgg cggcaagcgc
     8341 atcctgcgcg ctttccaaat cttctttagc ggtcgcatca tccttccaca acgccgcctg
     8401 acgcttatat ttcttctccg cgctgcccaa tgcaatctgt gccgacacca gcttcgcctg
     8461 atacgtttcc aacttggatt tttccgtatt gagcgtattg gtctgcgagg tcgaattgat
     8521 ttccgcaatc aaatcgccct ttttaacctg ttgcccgagt ttgacataaa gtttcttaat
     8581 ctgccccgat gcctgcgcgc cgaccgatac caggttgaac ggcgaaatct cccctgttgc
     8641 agaaaccgtc cggctgatgt cgccgcgcct gaccgcttcc gtaatataag cagcctgcgg
     8701 ttcgggcttc agataagacc atccgcccca aaccgctgcc gccgcgaccg ccgcaacagc
     8761 cgcccatttc atcatttttg ccatgttttc aattctctgt atgcgtcaat cccataaatc
     8821 ggaagcggat tctaccgcaa gtccctgccc catccaaggc ggcaaactgc cgacaataaa
     8881 aataaccatt tgttttaaat ggcttataca atctgctttc ccgaaaattt caatccgttt
     8941 acatattccg ccatttccga tacggcgtta taatgtcgcc gaccgacaaa caaatggaaa
     9001 cacattgcta tgaaaaacgt tcaaaaaggc tttacgctgc tcgagctgat gattgccgtc
     9061 gccatcctcg gcatcctgac gctcatcacc tacccttcct ataaaaccta catccggcgc
     9121 atccgcctgt cggaagtcaa atccaccctg ctgatgaacg cgcagaccat ggaacgttac
     9181 taccgccaaa aagggacgtt tgaaaactac gataaaaaca aactgaaaca aaacaaatat
     9241 ttcaacgtta ccttaagcaa agtcagcccc gaccacttta cccttcaggc cgaccccaat
     9301 ccgatgacca acgaaggcga aacctgcgtc gttacgctca acgacggcgg cacactgtcc
     9361 gccgccggca gcgggcagga ctgcccggac ttcgactaat cctccgccga agcccgcaaa
     9421 cccgtaaaaa tgccgtccgg acacagcttc agacggcatc tttacgggtt tgccatccgt
     9481 ttttttcaaa cttgaaacct gccgcccccg catccggcaa ccgcccccga tgccgcacct
     9541 ccccaactgt tataatataa catataatct atatttttca acaacatacc acttgacctg
     9601 tgagatgcgg aagcgtatgc ttacccttat atcggacaac attccgttta caggtttttt
     9661 tgccgtaact aaggagcgca atcatgaaaa tgcaggcagt tgttgtgaat aaaaatgtag
     9721 cgggcgatgt ggaaatagtc gaacgcgagg ttcgcccgtt ggaatacggc gaggcgttgg
     9781 tcgaagtcga atattgcggc gtgtgccaca ccgacctgca cgttgcggca ggcgactacg
     9841 gcgaaaaacc gggccgcgtg ctgggacacg agggcatcgg tttggttaaa gaagttgccg
     9901 acggtgtgaa aaatctgaaa gtcggcgacc gcgtcagcat cgcctggctg ttccaaagct
     9961 gcggctcttg cgaatactgc aataccggcc gcgaaaccct gtgccgctct gtattgaacg
    10021 cgggctacac cgccgacggc ggtatggcga cccactgcat cgtgagtgcc gattacgcgg
    10081 tcaaagtccc tgaaggtttg gatcctgcgc aagcttcgag cattacttgt gccggcgtga
    10141 ccacttataa agccattaaa gtttccagtg ttcgtccggg acagtggatt gccatctacg
    10201 gcgcgggcgg tttgggcaac ttgggggtcc aatacgcgaa aaaagtattc ggcgcgcacg
    10261 ttgtcgccat cgacatcaac gacgacaaac tggcgtttgc caaagaaacc ggcgcggatt
    10321 tggttgtcaa cgccgccaaa gaagacgctg ccaaagtgat tcaggaaaaa accggcggcg
    10381 cacacgctgc ggtcgtaacc gccgtatctg ctgccgcatt caactctgcc gtgaattgcg
    10441 tccgcgcggg cggacgtgtg gttgccatcg ggctgccgcc ggaatcgatg gatttgtcca
    10501 tcccgcgttt ggttttggac ggcatcgaag tggtcggctc tttggtcggc acgcgcaaag
    10561 atttggaaga agccttccaa ttcggcgcgg aaggtttggt tgtgccgaaa gtccaactgc
    10621 gtgctttgga tgaagcaccc gccattttcc aagaaatgcg cgaaggcaaa atcaccggcc
    10681 gtatggtgat cgatatgaaa aaagaatgcg gctgcggcca tcaccactga tttgacgtgg
    10741 cagtacacat cgaaatgccg tctgaacgct gttcagacgg cattttttat ggatttggat
    10801 ttgattttaa tctgttctgt ttgaaatacc gtctgaaaac ccatatcgca acacttcatt
    10861 aaaaacggca agattcagcc gttctgcaac ccgttcaaac ggcttccgcc atttccaacg
    10921 cttgtttgat gtccacggcg acgacgcgcg acacgccttt ttcctgcatg gttacaccga
    10981 cgagctgctc tgccatttcc atggtcaggc ggttgtggga gatgtagagg aattgggttt
    11041 gcgccgacat ttctttgacc aggttgcaga aacgtgaggt gttggcatcg tccagcgggg
    11101 catcgacttc gtccaaaagg cagaaggggg cggggttgag gctgaacagg gcgaacacga
    11161 ggctcatggc ggtgagggct ttttcgccgc cggaaaggag gtggatggtg ctgtttttct
    11221 tgccgggcgg acgcgccata atggacacgc cggcggtcaa aaggtcgtcg cctatcattt
    11281 tgagggtggc ttcgccgccg ccgaacaggg tcgggaagaa agtttggact ttgccgttga
    11341 cggcatcgaa ggtttctttg aaacgcgctt tggttttgtc gtcgatttgg gcgatggctt
    11401 cttccaaaag ggtgatggct gcctgcacgt cttcgctttg gctgcggtag tagccgtcgc
    11461 gttcgcgcgc ttcttcgagt tcttgcaggg cggcgaggtt gaccgcgccg agtgcttcga
    11521 tttgttgcga aaggctgccg atgctgctgt tcaatacttt cggcgattct ttcgccaacg
    11581 cttcgagcgc gtccaaatcg gcggcgcgtt cggtcaggtt ttgatggtag cgtttggcgt
    11641 tgatcagggc ttcctgctgc tgcaacaagg cggtttgggt ggcggcctga agctgcggca
    11701 gcttggtttg cagggtttgc actttagcgt attgctccct gccctgttcc tgaatctgcg
    11761 cgagtttctc ttgcacaaca atatattctt cgtccaaggt ctgtacggct tcgcttaatt
    11821 cttcaagctt gatgtgctgc tcgtcgtttt ggaactcggt ttcataggcg agggcaagct
    11881 cttgctggcg ttcctgccag tccagggttt gctgttcaag ctgggcgatt tgctgccggt
    11941 aattttgttt ttgctggttg agcttgtgga cggcgacttc ggcaagcccg tattggcggt
    12001 tggcttccaa cagggcaagc tgcgcctgtt tcagacgacc ttgctgctct tggcggctgt
    12061 gcgcggcggt ttgctgctgg tgttcgagtt cggcggcggc ttcctgcaaa atggcgatgt
    12121 cgtctgaaag cccgtcggac gtgtgttgca acacggtctg ctcttccgcc aactgcgcca
    12181 gttcgcgctc gatgtgttcg cggcggattt gcccttggtt ggtgcgcgcc agaagttcgg
    12241 cggcgcgttg ctgcgcctga ctgtattggc gcgtgtgctg ctgttgttgc tgcatcaggt
    12301 ttttgtgctg cacttcggac gagcgcacgg cggcttccgc ctgtttgaac gcggcttcgg
    12361 cggcggagag ttcgggggct aggttgtcca gttcggatgc gatgccgtcg aggtgcgctt
    12421 tttgggcaat caggctttcc tgcgcgggct tggcatagag caggacgctg accttatcga
    12481 cctgatgacc ttcgggcgtg agccagattt ggtgtgcgcc caaatcgttt tgatgcgcga
    12541 gggcatagct caaatcgggc gcgcacaata cgccgtcgag ccagtagtgc aatgccgtct
    12601 gaaacggcgg ctgcgcttgg atttggttca gcaatgcctg tacgggcagg gattttttga
    12661 tgccgcctga gaggtcgtct gaaagccatg ccgcctgccc ctgcggcaaa ggctcgggcg
    12721 gcacgaaacc ttgcggcacg gcgcgggcgt gcaggcgttc ggcaagaata acggacaagg
    12781 cgtgctgcca ctcggcgggg gcggtaatgt gttgccacag ttgcggcgcg acggcgtggt
    12841 cggttgcctg ccagaagtcg gcggcttcct gctgttgcga caggatttgc gacaacgcct
    12901 gctgctgcgc ctgtaaagtg atgtgttgct gcttcaggct ttggaagcgg tttgaggccg
    12961 tctgaaaagc ctcgcgggcg gcgtgtaaag cttcttcggc ggcgatgatt tgttcttcgt
    13021 aatgctcttg ccggctttgc aacaaggcgg cggcttcctg cgcggcggcg gtttcggctt
    13081 cgtcgggcag gttcagggct tggttttcct gcttcagacg gcctttgcgc tcttcgtgct
    13141 tggcaatcgt ttgttcggca tgggcaagct gctgctgctt caacgccagt tcgcggcgga
    13201 tgcggtttgc ctcgtcctgc cgggtttgga aggcggcgtt gagcgtggct tgggcttctt
    13261 ccaattcggg cagacgctct tcgtgttcgg caacctgcat cgcccattcc gccaactcgg
    13321 tttgcttttc ttctgcctgc aactcgtttt cctcaagctg cacgcggatt tgctgctgtt
    13381 cttgatggat gcgctgcatc tgcgcctgcg ccgcctgctt gtcgcgttcg atgcgttggt
    13441 gcaggttttg ctgatggcgg atttgttctt ccaaacgggc aatctgctcg cgcaacacgc
    13501 cgcgtttgtt gctcaattcg tgtaccgcct gctgctgcga ctgttcggcg gtctgcaagg
    13561 cgtgtacttc gtcgtttaac gcctgaacct gcgcggcggt ttcgtcctgc tgcgcctgca
    13621 aagactgatg ctgcgcggtc gccttgtcgg cggctgcaag cgattgctgc cattgggcgt
    13681 aatcgagcaa atcctgttgc cggttcaact gcgcggtcag ggatttgtag cgttcggcgg
    13741 tttccgcctg tttctccagc ttttccacct gacgcgccaa ctcgttctgc aaatcgccca
    13801 aacgctgcaa atgctcgcgc gtgtctttca gacggccttc cgtctccttg cggcgttcct
    13861 tatatttgga cacgcccgcc gcttcctcga tataggcgcg caactcctcc ggccgcgctt
    13921 cgatgatgcg cgaaatcatc ccctgctcga taacggcata accgcgcgca cccacgcccg
    13981 tacccaaaaa taaatcggta atgtcgcggc ggcgcacggt ctgattgttg atgaaataag
    14041 tcgattcgcc ctgccgcgtc agctgccgct tgatgctcac ctcggcatac tgtccccacg
    14101 caccctgcaa actgtggtcg ctgttgtcaa acaccagctc caccgaagcc ctcggcgcag
    14161 gacggcgcgt cgccgcaccg ttaaaaatca cgtcctgcat actctcgcca cgaagctgct
    14221 tcgccgaagc ctcacccaac acccagcgca ccgcgtcaat cacattcgac ttgccgcaac
    14281 cgttcggccc gataaccgcg acaagctgcc ccggaacatg aatcgtggtc gggtcggtaa
    14341 aagatttgaa gccggagagt ttgatgtggg tcaggcgcat aatggtcgga aaaaataaaa
    14401 aagaagcgta ttttaacgga aatcccgccg caccacccca tatcttgccg gcaaaacctt
    14461 accgcatccc gcacccgcga tgccgtctga agccttcaga cggcattttt aacgcgccga
    14521 accccggttc cgccaatgcc gatgcttggc gcggcatttg ccgtattgcc ccgccgccgg
    14581 gcgcgttata atccgccacg acatccgccc gatttggaaa cctgcctatg aaacccgcct
    14641 atttcatttc cgacctgcat ttgagcgaaa agcagcccga actgaccgcg ctgttgctgc
    14701 gttttttacg ttcttccgcc gccaggcagg cgcgggcggt ttacattttg ggcgatttgt
    14761 ttgatttttg ggtgggcgat gacgaagttt ccgagttgaa tacttcggtt gcgcgggaaa
    14821 tcgggaaatt gtccgacaaa ggcgttgccg tgttcttcgt caggggcaac cgcgatttcc
    14881 tgattgggcg ggatttttgc cgacaggcgg gtatgacgct gctgccggat tactcggttt
    14941 tggacttgtt cggctgcaaa accctcatct gccacggcga cactctgtgt acggatgaca
    15001 gggcatacct gcgtttccgc cgcatcgtgc attgcaggcg gctgcaaaaa ctgttcctaa
    15061 tgctgcccct gaagtggcgc acgcgccttg ccgccaaaat caggcgtgtc agcaaaatgg
    15121 aaaaacaggt caagcccgcc gatattatgg atgtcaatgc cgcctttacc gcgcggcagg
    15181 tacgcgcctt cggtgcggaa aggctgatac acggacacac ccaccgcgag catatccatc
    15241 acgaaaacgg ctttacccgc atcgttttgg gcgactggca taacgactat gcttcaatcc
    15301 tccgcgtaga cggggacggc gcggtattcg tgccgctgga aaatgctgaa aatgccgtct
    15361 gaagcctttc gggcggcttt ttttacacgc ccctttccca cactccctcc gccgcatcat
    15421 caccatcctt aacccgcatt aatagccatt atcgataaaa tgcttgaccg attacataag
    15481 attacgtaaa gtgtgcaaat gcataacaat tggtcttacc aatttatctt ttaaccaaaa
    15541 tatcgggtgt acgggatttg aacgtctttc caaacctcga cgcgccttat gatgcaaatg
    15601 cctaaaaagg attcgttatg gcacttttcc tcagcatatt ccccatcgtc ctgctgattt
    15661 ggctgatggt gaaaaaaaac agtatgccct cctacgtcgc gctgccgatt accgcagtgc
    15721 tgatttacgc catcaaactt ttctacttcg acgatgcggg catgctgctc aacgccaccg
    15781 ccgcttccgg cctcgtcaaa acgctcacgc cgattaccgt gattttcggc gcgattatgt
    15841 tcaaccgtat gatggaaacc acgggctgca tcgatgtcat ccgcaaatgg ctggcgacca
    15901 tcagcccgaa ccccgtagcg caactgatga ttatcggctg ggcttttgcc tttatgattg
    15961 aaggcgcatc cggcttcggc acgcctgccg cgattgccgc gccgattctg atgagcttgg
    16021 gcttcaaccc gttgaaagtg gcgattttca ctttggtgat gaactccgtc cccgtctctt
    16081 tcggcgcggt cggtacgccg acctggttcg gtttcgcacc gctgaacctg agtgccgaag
    16141 acatcctcgc catcggcagg cagaccggcg taatgcactt cttcgcaggt ttcgtcatcc
    16201 ccgtcatcgg cttgggcttc atcgtacctt ggtctgaaat ccgcaaaaac ttgggcttcg
    16261 tcgccattgc cgtcttctcc tgcaccattc cttatgtcgc attggcgatg gtcaacgaag
    16321 aattcccgtc gctcgtcgcc ggcgcgatcg gcctgatggt gtccgtattc gccgccaacc
    16381 aaggctgggg cttgagcaaa gaccacgcca aagacccgaa tgccgaaaaa gtgccgttcg
    16441 cccaagtcgc caaagcactc gcccctttgg gtatgctgat cggcatgctg gtggttacgc
    16501 gcatcaaaca gctcggcatc aaaggcattt tgaccagcaa agaagaatgg ttcagcttcc
    16561 aactgccgtt tgatttgtcc aaaatcaccg tcagcgactc cctgacgatt actttcggca
    16621 atattttcgg acaagatgtc agcgcgtctt accaaacgct gtacgtcccg gcttggattc
    16681 cgtttgtgct gaccgtttgg atttgcatcc tgctgtataa aaccaaattc aaagatgcct
    16741 ggacgattta tgccgtaacc ttcaatcaaa ccaaaaaacc gctgcttgcc ctgatgggcg
    16801 cgctgattat ggttcagctg atgctggtcg gcggcgacaa ttcgatggtg aaaatcatcg
    16861 gtaaggaatt tgccgcaatg gcgggcgaac actgggttta tttctcgccg tatctgggcg
    16921 cgatcggcgc gttcttctcc ggctccaaca ccgtgtccaa cctgaccttc ggcccgattc
    16981 agcagcaaat cgccttggat accggcctgt ccgttaccct gattctggcg ttgcagtccg
    17041 tcggcggcgc gatgggcaat atggtgtgcc tcaacaacat catcgccgta tgtaccgtat
    17101 tggatgtgaa aaattccgaa ggtgcgatta tcaagaaaac cgttatcccg atggcgattt
    17161 acggcgtgat tgccgtcgtc gcggcaatga ttttcttcct ctaggcgaaa cgccaccatc
    17221 catagcggca gcacgcgggg aacggaaacc gccgttcccc gtctgggcgg cgcgtcgggc
    17281 agaatcccgg tgccggaaca agcccgcccc gccaaacaaa tgccgtctga aaccggaaaa
    17341 ggcttcagac ggcatttttc cgccgtttgc gttcaggcgt aatgatgatg cggcatcttg
    17401 ccgtcaaggc ggtagcgcgt gccgcaatac gggcaggcaa cgctgcccga ttctccttcg
    17461 cccaaaggca aaaacactct cggatgcccg ttccactgct cgttgccggg tcccgagcaa
    17521 tacagcggca gattttccgg caacacggaa atttcctgca gattcagatt gtccatttga
    17581 ttttcctttg cgtggttggc gtgcgcccat tttacgccat cggcaggcta aaggatattt
    17641 ccgacccgaa ggtgcaatcc gctataatcc ccacttttca gacggcatac catgactgcg
    17701 cttacccttc cggaagacat ccgccaacaa gaaccatccg ttctgctcta taccctcgtt
    17761 tccgcctacc tcgaacacac cgcccaaacc ggcgacgaat ccctctcctg cctgtccgac
    17821 gaccagcaca cgctgaccgc attctgctac ctcgacagcc aagtcgaaga aggtggcttc
    17881 gtgcaactca tcgcatccgg ttacggcgaa tatattttcc gcaacccgct tgccgacagt
    17941 ctccgccgct ggaaaatcaa aattacgccc aaaatcatcg acaaagccaa aagcctctac
    18001 gaaaaacacg gcgaaaccat cgaaacgctc gccgacggag gcgcagacat cgaatccctg
    18061 cgcaaacagt tccccgactt tgaagaatgg gacggcgcat actacgaagc cgccgaacaa
    18121 gacctgcccc tgcttgcaga acacatacag tcaaactggg aaaccttcgc ccatatcggg
    18181 caggcgtgat tgcgtctgtt tccagcccgt gtaaaacagc gtaaaatcgg caaacccgaa
    18241 tgaccttccg tccccatcaa ggagcaagct atgttcttca agcacatcga agccgccccc
    18301 gccgatccga ttctcggttt gggcgaagca ttcaaagccg aaacccgccc cgaaaaagtc
    18361 aacctcggca tcggcgttta taaagacgca tccggcgcga cacccctcgt caaagccgtc
    18421 aaagaagccg aaaaacgcct gttggaaagc gaaaccacca aaaactacct caccatcgac
    18481 ggcgttgccg actacaacgc gcaaacccaa atcctgctgt tcggcaaaga ccacgaaatc
    18541 atcgccagcc gtcgcgccaa aacagcgcaa agcctcggcg gtactggcgc attgcgtatt
    18601 gcggccgagt ttgccaaacg ccagttgaac gcgcaaacca tctggatttc caatccgact
    18661 tggcccaacc acaacgccat cgccaaagcg gtcggtatcc aagacaaacc ttatcgttac
    18721 tatgatgccg ccaaacacgg tttggattgg gacggcatga ttgaggactt gagccaagcg
    18781 caaaaaggcg acatcgtcct gctgcacggc tgctgccaca atcctaccgg catcgaccct
    18841 acgcccgaac aatgggaaac tttggcaaaa ctttctgccg aaaaaggctg gttgccgctg
    18901 tttgactttg cctaccaagg cttcggcaac ggtctggaag aagatgccta cggcttgcgc
    18961 gtgttcttga aacacaatac agaattgctg attgccagct cttattccaa aaacttcggt
    19021 atgtacaacg agcgcgtggg cgcgttcact ttggtggccg aagatgaaga aacagcagcc
    19081 cgcgcccaca gccaagtcaa aaccatcatc cgtaccttgt attccaatcc ggcttcacac
    19141 ggcgcgaaca ctattgcgct ggtgttgaaa aatgatgatt tgaaagcaca atggattgcc
    19201 gaactcgatg aaatgcgcgg ccgcatcaaa gccatgcgcc aaaaatttgt cgagttgctc
    19261 aaagccaaag gtgcaagcca agactttgat ttcattatcg aacaaaacgg tatgttctcc
    19321 ttcagcggct tgactcccga acaagttgac cgtttgaaaa acgagtttgc catttatgcc
    19381 gtccgctccg gccgcatcaa cgtcgccggc attaccgacg acaacatcaa ttatctgtgc
    19441 gaaagcatcg tgaaagtact gtaaaaagca cagccatatg aaaatgccgt ctgaacttta
    19501 accagttcag acggcatctg ttttttgtta aaaaacaata aaccataaca atttcagaca
    19561 agctaaaaac atctataaaa ccaacccaat atgatgaact caaataaaaa atacgaatat
    19621 catcattctc aaattcaaaa tttgaacgcc acagtattat ccgaagccac aaaaaccttt
    19681 ccgccgtcat tcccgcgaag gcgggaatcc gggaatccaa tgctgcaaga attgattaga
    19741 aacaactgaa accgagcaaa ctggattccc gcctgcgcgg gaatgacgaa ataaggcgag
    19801 taaaactgat gaaacaaatt aattaaaaac aataacttat attattttct ttaaattttc
    19861 gataaaatca attttccgta ttcaatactg ccccaatcaa ttcccgcgca ccgtcgtccg
    19921 ccaatttctt agcgacagcg cgtccgagcg cgtcggcata ttcggcaggg gcttgcgcgt
    19981 ccgcccgcaa cacaaccgaa ccgtcgggat gaccgaccaa gccgcgcaag gtcagcaagc
    20041 cgttttcttc cgtgcaatat gcggccaaag gcacttggca gcttccgccc aaagcgcgtg
    20101 cgagggcgcg ttcggcggta acgcaggcat tggtaacgcc gtgattcaag ggtttcaaaa
    20161 cttcatacaa atcttcgcga tgccctgcaa tttcaatacc caatgcacct tgtccggcgg
    20221 caggcaggct gtcggattcc gacaaaatca tgcggatgcg tccgtccaat ttcagacgct
    20281 gcaaaccggc ggcggcaagg ataatcgcgt cgtattcgcc gttatcgagt ttggacaaac
    20341 gggtttgcac attgccgcgc aaaggtttga taaacaaatg cggatagcgc gcgcgcaact
    20401 gagcttcgcg gcgcaggctg gatgtgccga caaccgcgcc ttcgggcatt tcttccaaac
    20461 gcgcgtattg gttggacaca aatgcgtcaa acggattggc gcgttcgccg atggccacaa
    20521 gcgcgaaacc ttcaggcaaa tccatcggta cgtctttaat cgaatgcacc gccaaatcgg
    20581 cgcgcccgtc atataaagcc tgttccaact ctttgacaaa caagccttta ccgccgactt
    20641 ttgacaaagt tttgtccaaa atctgatcgc cgcgcgtggt catgcccaaa atctcgactt
    20701 cgcaatcggg atacagagct ttcagacggc cttggatatg ctttgcctgc cacatagcaa
    20761 gcaggctttc gcggctggcg atgacgagtt ttttcgggtt catgttcaat gcgttcaaag
    20821 aatggaaacg gcgtgaagtc tatcatattt tgaacgtttc ttcagacggc accgtcaggt
    20881 ctatgttata tttacaccca caaaacacga aacccgccac aatgaaacgc accaaaaaat
    20941 accctttctt aacgttgcag cggcaacgtt tccatttgaa ctttgaaaac gcctcttccg
    21001 ccgtcggcat cccagccgaa cgcgattttt accgctgggc gtggtctgcc ttgaaaaaca
    21061 aataccgccg cgccgacatc agcctgattc ttttggacga agaagaagcc cgcgcctaca
    21121 accgcgacta ccgcggcaaa gattacgcca ccaatgtatt gagtttcgcg ctcaacgaag
    21181 gcgaaatcct gccctgccaa gtttcggaaa aactgtacgg cgatttgatt atctgcccgc
    21241 aagtggtttt gaaagaagcc gccgaacaag gcaaaacacc cgaacagcat tttgcccacc
    21301 tgaccataca cggtacttta cacctgatgg gctacgacca tatcgaagac gatgaagccg
    21361 aaataatgga agccgaagaa atccgcctga tgctggcggc aggcttcccc aacccctacc
    21421 aagaggacga atattaaaat ggacggcgca caaccgaaaa caaatttttt tgaacgcctg
    21481 attgcccgac tcgcccgcga acccgattcc gccgaagacg tattaaacct gcttcggcag
    21541 gcgcacgagc aggaagtttt tgatgcggat acgcttttaa gattggaaaa agtcctcgat
    21601 ttttccgatt tggaagtgcg cgatgccatg attacgcgca gccgtatgaa cgttttaaaa
    21661 gaaaacgaca gcatcgagcg catcaccgcc tacgtcatcg ataccgccca ttcgcgcttc
    21721 cccgtcatcg gcgaagacaa agacgaagtt ttgggcattt tgcacgccaa agacctgctc
    21781 aaatatatgt tcaaccccga gcagttccac ctgaaatccg tcttgcgccc tgccgttttc
    21841 gtgcccgaag gcaaatcttt gaccgcactt ttaaaagagt tccgcgaaca gcgcaaccac
    21901 atggcgattg tcatcgacga atacggcggc acatccggtt tggtcacctt tgaagacatc
    21961 atcgagcaaa tcgtcggcga aatcgaagac gaatttgacg aagacgatag cgccgacaat
    22021 atccacgccg tttcttcaga acgctggcgc atccacgcgg ctaccgaaat caaagacatc
    22081 aacaccttct tcggtacgga atacagcagc gaagaagccg acaccattgg cggcctggtc
    22141 attcaagagt tgggacatct gcccgtgcgc ggcgaaaaag tccttatcgg cggtttgcag
    22201 ttcaccgtcg cacgcgccga caaccgccgc ctgcatacgc tgatggcgac ccgcgtgaag
    22261 taagcaccgc cgtttctgca cagtttagga tgacggtacg ggcgttttct gtttcaatcc
    22321 gccccatccg ccaaacataa aaatgccgtc tgaaaccgga aaacaggttc agacggcatt
    22381 tcgcttatcc gcttattttt tgctcaaagt cagccccgtc cagccgaata acagggttaa
    22441 agccaaactc aaatagcaga aaaaggcata gggcagatat tcccagaccg gcacacccag
    22501 cgcatggctg ataaatacgc cgcacacgct ccacggaaca agcgggttga tgaccgtacc
    22561 cgcgtcttcg agcgtacgcg agaggttgcg ggaatgtagt ccgagcctgt cgtaaacggg
    22621 tttgaacgtt tctcccgaaa gcaggatgct caaatattgt tcgccaatca ggaagttcac
    22681 tccaaccgaa gtcatggcaa cgctgaacgt cgcgcgtccg gcattcgtca aaaagctgcg
    22741 gacggcatcc agcagggaag gaatcgcgcc cagcgcaaac agcagcccgc ccaaactcat
    22801 cccgagaatc acgatggttt gcgtgaaaaa catactttcc aaaccgccgc gcgaaatcag
    22861 tttgacaaca tctttaaacg cttcgccttc gagtttgtaa ccgccgtaaa accacgcgcc
    22921 gagctgacgc agatcgggcg tactgtgcag atacgttacg gcaacggcgg caataacggt
    22981 aaagagcatg gcgaccacgg cattgacgcg catcaatgcc aaaacgacca acagtgcaaa
    23041 cggaatcagc gaatagccgt gcaccaatcc cgtggcttca agctggctgc ggaaggattc
    23101 gacgctgttc aaatcctgcg cggcgacatt cggcaaaagc caaagcatca gtgccgcact
    23161 aatgagccac gcggggatgg tggtgtacat catatttttg atgtgctcaa acaagtcgat
    23221 gccgacgatg gacgcggaaa tgcccgtggt gtcggaaagc ggggacattt tgtcgccgaa
    23281 aaacgcaccg gaaacaatcg cgcccgccgt catcgccata tcggcatgaa acgccgccgc
    23341 catccccata aaggcaacgc cgacagtggc gcaggtggtc aggctgctgc cgatggacac
    23401 gccgatgacg gaacacagcg cgaaggcgga aaaataaaaa taagtcgggg aaatcagtcc
    23461 gaaaccgtaa tacatcagcg tcggaatcgc gccgctcatc atcagcgcgc tgaccatcag
    23521 cccgatgaag aaaaacaggt aaatcgcgcc cataccctga ttcaacgcgc ctatcatgcc
    23581 ctgctgcata tcgttgtatt tcaaaccgcg cgccaagccg tacaaaatca gcacgacgat
    23641 ggcggcaata atggacatat gcggcagcca ctccaatgaa atgatggtat agcccatcgc
    23701 ggcaatcaga gcgacgacga cggcaagtgc ctcaccgcgc ggcatatcga gtaaggattt
    23761 gaaagcgaac atgattcttt gcccgatttg atataaagtt aacggattct aacacaccat
    23821 accgaatccg cccgacgttt tcagacggca ttttagcgtt ttacaaaagc cggacagaaa
    23881 caaaacggca attttctcaa tttaaattaa tttttttgaa atataatttt ttattttttt
    23941 gtttgttgac atataagact tttatggatt gaagtattaa aacctcggca cacacgccgc
    24001 aaacaccggt acgcaaaaat gccgtctgaa agatgttcag acgacatttc tcaagaaaaa
    24061 gattatttgt ccgccctata tccgtacacc gcaaaaaaca cgatatacag ataacagatg
    24121 acggaaacga caaacgaaga catcagggtg taagtatctg ccacccagcc ctgcacgaca
    24181 ggaacgaccg caccgccgac aatcgcggta cacagtacac cggaagccgc gttggtaaat
    24241 tttcccaatc ctttggttgc caaagagaaa atcgtcggga acataatcga gttgaaaaaa
    24301 ccgatggcaa gcagcgacca catcgccaca tccgcattgc cgctacccgt cgccatcgcg
    24361 acggcaagca gtacgaccgc agccgatgcg ttaaacgcca aataacggtt gggcgcgaat
    24421 ttcgccatca ccgccgaacc gaggaaacgt ccgaccatcg cgccgcccca atagaacgac
    24481 aggtaatgcg cggcagaagc atgatccagc cctttcagat aacccaatac gttgaccatc
    24541 aacgaaccga tagacacctc cgcgccgaca tagcagaaaa tgcctgccgt accgaacacg
    24601 agatgtttgt attgccatac gccggttttg ccgtcgtggt tgtgcgcgct ttcctcggcg
    24661 gcaattttgc gcgcgtcggg cagccggatc attttcacga aaacggcaag gataatcagc
    24721 agccccgcca gtcccaaata gggaatctgt acggaagaaa tctgttccgc cttgctgacg
    24781 gtttgggttg cgtccgccaa aatcaggaac gcgccgattt gcggcgcaat ggtcgtaccc
    24841 aaagcgttaa acgcctgaac cagcgtcagt gttgccgatt ccttgccggg tttcgccagc
    24901 agggtaacat aaggattacc ggcgacctga agcagcgtta cgccggaagc caaaataaac
    24961 aacgcgccca aaaataccgc gtaagaatgg ctgcccgcag caggataaaa cagcaggcat
    25021 ccgaccgccg tcagcagaaa gccgccgata acgccgtttt tgtagccgac tttgccgaca
    25081 aaagccccca tcgggatgga catcaccgca taggcagtaa agaaacagaa ttggatcagc
    25141 atcgcctgaa cgtaagacag gtcgaaaatt tctttcaaat gagggataag gatgtcgttc
    25201 atgcaggtaa taaaacccat catgaagaac agcgtggtca agacgaccaa tggggacgta
    25261 tgattgtttt gtgattgcgc agacatgatt tgcctttcgt ggtgtcggaa tattacccgt
    25321 ttcaagaaaa tagaaattga catttcttaa cggcaatgca aatcatactg atatttgaac
    25381 attttgcaaa ctttatcgga tgcaggcaat gcgccgatct gaaattcaag cagcagaaat
    25441 taatatttta cagttgcttg catagatttt aatagatttt aaaaaattcc ggcggacttg
    25501 caaaaaccgt tcccaataaa atgaaaatcc gccgccgtat ccggaaaatt cggaaatgcc
    25561 gcatcgtggc atcaaaaccg gagcggaaag aatgtcgtat gcccgacaaa aaaggggcat
    25621 acggctgtgc cgtatttttt gcaccgtcct ccgcccttcg gcgggggcgt gaaaatatag
    25681 tggattaaca aaaatcagga caaggcgacg
//
LOCUS       DAXHPV010000010        25285 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.010, whole genome shotgun sequence.
ACCESSION   DAXHPV010000010 DAXHPV010000000
VERSION     DAXHPV010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 25285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25285
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.010"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            75..4550
                     /gene="mspA"
                     /locus_tag="ACFM6C_000277"
                     /gene_synonym="ausI"
     CDS             75..4550
                     /gene="mspA"
                     /locus_tag="ACFM6C_000277"
                     /gene_synonym="ausI"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter adhesin/serine protease MspA"
                     /protein_id="HFC6157794.1"
                     /translation="MRFTHTIPFYSVLSTLGLFAVSPAYSSIVRSDVDYQYFRDFAEN
                     KGAFAVGASNISIQDKQGKILGRVLSGIPMPDFRVSNRQTAIATLVHPQYVNSVKHNV
                     GYGSIQFGNDTQNPEEQAYTYRLVSRNPHPDYDYHLPRLNKLVTEISPAALSSVPLLG
                     NGQPKANAYLDTDRFPYFVRLGSGTQQVRKADGTRTRTAPAYQYLTGGTPLKVLGFQN
                     HGLLVGGSLTDQPLNTYAVAGDSGSPLFAFDKHENRWVLAGVLGTYAGFDNFFNKYIV
                     TQPEFIRSTIRQYETRLDVGLTTNELIWRDNGNGGSTLQGLNEHITLPIANPSLAPQN
                     DSRHMPSADAGKTLILSSRFDNKTLMLADNINQGAGALQFDSNFTVVGKNHTWQGAGV
                     IVADGKRVFWQVSNPKGDRLSKLGAGTLIANGQGINQGDISIGEGTVVLAQKAASDGS
                     KQAFNQVGITSGRGTAVLADSQQIKPENLYFGFRGGRLDLNGNNLAFTHIRHADGGAQ
                     IVNHNPDQAATLTLTGNPILSPEHVEWVQWGNRPQGNAAVYEYINPHRNRRTDYFILK
                     PGGNPREFFPLNMENSTSWQFIGNNRQQAAEQVAQAENARPDLITFGGYLGENAQTGK
                     AAPSYSKTNIEWVNGPNTPHKPSPYTNTPTRTGAGVPTITASKKAATPVPTSHGMPTA
                     PKTGNFSDMTGEAAIEKTRHIANAAVYGRPEYRYNGALNLHYRPKRTDSTLLLNGGMN
                     LNGEVLIEGGNMIVSGRPVPHAYDHQAKREPVLENEWTDGSFKAARFTLRNHARLTAG
                     RNTAHLDGDITAYDLSGIDLGFIQGKTPECYRSYHSGSTHCTPNAVLKAENYRALPAT
                     QVRGDITLNDRSELRLGKAHLYGSIRAGKDTAVRMEADSNWTLSQSSHTGALTLDGAQ
                     ITLNPDFANNTHNNRFNTLTVNGTLDGFGTFRFLTGIVRKQNAPPLKLEGDSRGAFQI
                     HVKNTGQEPQTTESLALVSLNPKHSHQARFTLQNGYADLGAYRYILRKNNNGYSLYNP
                     LKEAELQIEATRAEHERNQQAYNQLQATDISRQVQHDSDATRQALQAWQNSQTELARI
                     DSQVQYLSAQLKQTDPLTGILTRAQNLCAAQGYSADICRQVAKAADTNDLTLFETELD
                     TYIERVEMAESELDKARQGGDAQAVETARHAYLNALNRLSRQIHSLKTGVAGIRMPNL
                     AELISRSANTAVSEQAAYNTGRQQAERRIDRHLTDPQQQNIWLETGTQQTDYHSGTHR
                     PYQQTTNYAHIGIQTGITDRLSVGTILTDERTNNRFDEGVSARNRSNGAHLFVKGENG
                     ALFAAADLGYSNSRTRFTDYDGAAVRRHAWDAGINTGIKIDTGINLRPYAGIRINRSN
                     GNRYVLDGAEINSPAQIQTTWHAGIRLDKTVELGQAKLTPAFSSDYYHTRQNSGSALS
                     VNDRTLLQQAAHGTLHTLQIDAGYKGWNAKLHAAYGKDSNTARHKQAGIKIGYNW"
     gene            4782..6236
                     /gene="mgtE"
                     /locus_tag="ACFM6C_000278"
     CDS             4782..6236
                     /gene="mgtE"
                     /locus_tag="ACFM6C_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter"
                     /protein_id="HFC6157795.1"
                     /translation="MSIEQTPPNLENNGIENDVERVSADFDRVHSLCEILEPAFEQIE
                     NGTPLEDAPLRDKLTELTVLLSELHPADVAAVLESLPPRERNIVWILVKPEDDGEVLL
                     EVSDAVRETLIESMDKDELLAAVDDLDADELAELADDLPHQVVYEALQTRDEEERAQV
                     KAAMSYEDNQVGAIMDFELVSIRADVACEVVLRYLRRFDSLPDHTDKIFVVDENDVLQ
                     GVLPIRKLLVADPEDLVENVMAKDVVRFRAEDDVEEAAQAFERYDLVTAPVVDENKKL
                     IGRITVDEMVDVIREESEADMLNMAGLQEEEDLFAPVLDSVKNRWMWLAVNLCTAFLA
                     SRVIGAFEGSIEKIVALAALMPIVAGIGGNSGNQTITMIVRAMAMGQLTGMQAGRLLK
                     KEVGVALVNGIIWGTVMGAVSWLLYGSLGIGLVMIAAMTLNLLLAATVGVLIPVVMEK
                     FGRDPALGSSVLITAVTDSGGFLIFLGLATLFLL"
     gene            complement(6322..7230)
                     /gene="hslO"
                     /locus_tag="ACFM6C_000279"
     CDS             complement(6322..7230)
                     /gene="hslO"
                     /locus_tag="ACFM6C_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HFC6157796.1"
                     /translation="MNQTAIDRADVRTRFIFDDMPVRGLHVRLENVWQHIVKQKNYPA
                     AIRRALGELLAAGVLLSGNLKNEGTLIVQVQGQGRLKMLVAEATSDRTVRATARWDEA
                     AEIGEDESLVDLLGEGGVFVLTLQPKDGEPWQGVVPLEGDGIAQMLMNYMKRSEQLDT
                     HIVLSASDEAAGGLLVQRLPEEVLDEEAWEHVSTLARTLTAGELAELDAQHVLYRLFH
                     ETPPRVFEPETFEFSCTCSRGKVSDMLLMLGGEEVGGVVAEQGSIEVDCDFCHSKYVF
                     DETDVNALFGEDVVGVAKGLPRHTVQ"
     gene            7475..8230
                     /locus_tag="ACFM6C_000280"
     CDS             7475..8230
                     /locus_tag="ACFM6C_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HFC6157797.1"
                     /translation="MDSFFKPAVWAVLWLMFAVRPALADELTNLLSSREQILRQFAED
                     EQPVLPINRAPARRAGNADELIGSAMGLNEQPVLPVNRVPARRAGNADELIGNAMGLN
                     EQPVLPVNRAPARRAGNADELIGNAMGLLGIAYRYGGTSVSTGFDCSGFMQHIFKRAM
                     GINLPRTSAEQARMGTPVARSELQPGDMVFFRTLGGSRISHVGLYIGNNRFIHAPRTG
                     KNIEITSLSHKYWSGKYAFARRVKKNDPSRFLN"
     gene            8249..8467
                     /locus_tag="ACFM6C_000281"
     CDS             8249..8467
                     /locus_tag="ACFM6C_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157798.1"
                     /translation="MSMPEMPKWYDDDGQIVSCTEKVKVMSENMAELYQTAQDAFEDA
                     LLMGCGERQLRDYLLALIEGLENPYRKV"
     gene            8612..8959
                     /locus_tag="ACFM6C_000282"
     CDS             8612..8959
                     /locus_tag="ACFM6C_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HFC6157799.1"
                     /translation="MNIIRALLIILGCLAAGETAVFLAGIKLPGSIVGMGVLFALLQA
                     GWVKTSWLQQLTDALMANLTLFLVPPCVAVISYLDLIADDWFSILVSASASTLCVLLV
                     TGKVHRWIRGIIR"
     gene            8956..9648
                     /locus_tag="ACFM6C_000283"
     CDS             8956..9648
                     /locus_tag="ACFM6C_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HFC6157800.1"
                     /translation="MNEILRQPSVLLFLTLAVYAIAIIVRTRTGNIFCNPVLVSTIVL
                     IAYLKILGIDYAVYHNAAQFIDFWLKPAVVVLAVPLYQNRRKIFNQWLPVIVSQLAGS
                     VTGIVTGMYFAKWLGAEREVVLSLASKSVTNPIAIEITRSIGGIPAITAATVIIAGLV
                     GQIAGYKMLKNTVVMPSSVGMSLGTASHAMGIAASLERSRRMAAYAGLGLTFNGVLTA
                     LIAPLLIPVLGF"
     gene            9715..10935
                     /gene="argJ"
                     /locus_tag="ACFM6C_000284"
     CDS             9715..10935
                     /gene="argJ"
                     /locus_tag="ACFM6C_000284"
                     /EC_number="2.3.1.1"
                     /EC_number="2.3.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004358 - glutamate N-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate
                     N-acetyltransferase/amino-acid acetyltransferase ArgJ"
                     /protein_id="HFC6157801.1"
                     /translation="MAVNLTEKTAEQLPDIDGIALYTAQAGVKKPGHTDLTLIAVAAG
                     STVGAVFTTNRFCAAPVHIAKSHLFDEDGVRALIINTGNANAGTGAQGRIDALAVCAA
                     AARQIGCKPNQVLPFSTGVILEPLPADKIIAALPKMQPAFWNEAARAIMTTDTVPKAA
                     SREGKVGDKHTVRATGIAKGSGMIHPNMATMLGFIATDAKVSQPVLQLMTQEIADETF
                     NTITVDGDTSTNDSFVIIATGKNSQSEIDNIADPRYAQLKELLCSLALELAQAIVRDG
                     EGATKFITVRVENAKTRDEARQAAYAVARSPLVKTAFFASDPNLGRLLAAIGYAGVAD
                     LDTDLVEMYLDDILVAEHGGRAASYTEAQGQAVMSKAEITVRIKLHRGQAAATVYTCD
                     LSHGYVSINADYRS"
     gene            10995..12404
                     /locus_tag="ACFM6C_000285"
     CDS             10995..12404
                     /locus_tag="ACFM6C_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HFC6157802.1"
                     /translation="MTSTFPRRLARKIRQTRRLSRKSIAFLFLLAGSALVALTALFFA
                     HLADFALELNAKLVQQYPWFAWVALPLGLPLIAWLTRKFAPFTAGSGIPQVIASLSLP
                     YGAQKTRLIRLGQTLLKIPLTFLGMLFGASIGREGPSVQVGATVMGAWGAWCKKHGLA
                     FKGMQENDLMAAGAAGGLAAAFNAPLAGVIFAIEELGRGIMLRWERQILLGVLASGFI
                     QVAIQGNNPYFSGFNGGVLEHIFLWVALSGLVCGAAGGLFGRLLYRGAAAFAPRKIRG
                     FIRNRPLLLAALMGLLLALLGTFYQGKTYGTGYHEAAQALHGIYEAPFGLAAAKWLAT
                     VFSYWAGIPGGIFTPSLTIGAVLGEHIAAIADISQGANIIVLICMAAFLAGATQSPIT
                     SAVVVMEMTGGQSLLFWMLIACIFASQVSRQFSPRPFYHASGMRFRQRVLQETAAQTG
                     NAPARPQTANSKTGMPSEN"
     gene            12594..13985
                     /gene="hrpA"
                     /locus_tag="ACFM6C_000286"
     CDS             12594..13985
                     /gene="hrpA"
                     /locus_tag="ACFM6C_000286"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003724 - RNA helicase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HFC6157803.1"
                     /translation="MFPDFSQTLSKDRHFLRSAFKNPNKYGGLSKVEEKYQKSHEIFL
                     KRLAALPKPEFDNTLPVHEKLDEIKKAIAENQVTIICGETGSGKTTQLPKICLELGRG
                     AAGLIGHTQPRRLAARSVAERIAEELKSEIGSAVGYKVRFTDHTSRDACVKLMTDGIL
                     LAETQTDRYLAAYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDAER
                     FSQHFNGAPVLEVSGRTYPVEILYSPLTGKDEDDAEVELTDAIVDAADELARYGEGDI
                     LVFLPGEREIREAAEALRKSTLRRNDEILPLFARLSHAEQHKIFHPTGAKRRIVLATN
                     VAETSLTVPGIKYVIDTGLARVKRYSARAKVEQLHVEKISQAAARQRSGRCGRVSAGV
                     CIRLFSEENFNNRPEFTDPEIARSNLAAVILRMASLKLGDVAAFPFLEMPDSRYINDG
                     FQVLLELGAVEAA"
     gene            14086..15213
                     /locus_tag="ACFM6C_000287"
     CDS             14086..15213
                     /locus_tag="ACFM6C_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HFC6157804.1"
                     /translation="MKHLLIDFENVQPQNLDKLLTENTHIWLFIGVLHKMLPISLVQS
                     LLRFGERVHLVQLQKTGKNALDFYLSYYLGQITATDPNAQIGILSRDGGYDVLVEHIL
                     KNHQAKGIVRLANIDEVQHQKITTEPPSALRENTPQPETTLKPQQPLTSYFQAALTAL
                     RRPDAFRPCRLHNLRQNLRKHILSDLFKEKTDEECEITTANVINKLKAQNFISIDEQE
                     TVSYHLSDNDLLQRIQRHILSQRPKTYADFQAVVQNRADALHLTVGTNDIQSFARHLR
                     DQNLIRQNNGKIEYAPFTEPKPQPTPKQPKKTAWEPDEIIWKKVIAALSLKNRPNKTK
                     TLRNTIQALTKSNAQETDKLLQHLQDTQVLRIDGTKIVYIK"
     gene            15391..16968
                     /gene="lpt3"
                     /locus_tag="ACFM6C_000288"
     CDS             15391..16968
                     /gene="lpt3"
                     /locus_tag="ACFM6C_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipooligosaccharide phosphoethanolamine
                     transferase"
                     /protein_id="HFC6157805.1"
                     /translation="MMKKSLFVLFLYSSLLTASEIAYRFVFGIETLPAAKMAETFALT
                     FVIAALYLFSRYKTSRLLIALFFAFSIIANNVHYAVYQSWMTGINYWLMLKEVTEVGS
                     AGASMLDKLWLPALWGVLEVMLFCSLAKFRRKTHFSADILFAFLMLMIFVRSFDTKQE
                     HGISPKPTYSRIKANYFSFGYFVGRVLPYQLFDLSRIPAFKQPAPSKIGQGSVQNIVL
                     IMGESESAAHLKLFGYGRETSPFLTRLSQADFKPIVKQSYSAGFMTAVSLPSFFNAIP
                     HANGLEQISGGDTNMFRLAKEQGYETYFYSAQAENEMAILNLIGKKWIDHLIQPTQLG
                     YGNGDNMPDEKLLPLFDKINLQQGRHFIVLHQRGSHAPYGALLQPQDKVFGEANIVDK
                     YDNTIHKTDQMIQTVFEQLQKQPDGNWLFAYTSDHGQYVRQDIYNQGTVQPDSYIVPL
                     VLYSLDKAVQQAANQAFAPCEIAFHQQLSTFLIHTLGYDMPVSGCSEGSVTGNLITGD
                     AGSLNIHDGKAEYVYPQ"
     gene            17070..20495
                     /locus_tag="ACFM6C_000289"
     CDS             17070..20495
                     /locus_tag="ACFM6C_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3418 domain-containing protein"
                     /protein_id="HFC6157806.1"
                     /translation="MDARSNPANVSDGLQNSSGHIGTNTRYRLTKLGEQMARLPIDPK
                     IARILLAAKKHDCMAEILVIASALLIQDPRERPLEARDAAAKAHERFTDKQSDFLAYL
                     NIWDSFQRERDKGLSNKQLVQWCRQYFLSHLRMREWRELHHQLAQTAIEMGLTTKEAA
                     FRRPPEIRQLTSSENQGDQDLSAKLKQKQLDKKQHRAQIRAAKEAGYEQIHRALLTGL
                     IANVGMKSPDGNDYTGARGSRFHLFPASALFKAKPKWVMAAELVETTRLYARDVAVIQ
                     PEWIEQEAPHLVRYHYFEPHWEQKRGEVVASERVTLYGLTVLPRRPVSYGKVAPEEAR
                     EIFIRSALVAQECDLKADFFVHNKKLIKEITELEHKSRKQDVLVDDEALFAFYNERLP
                     EMAWKDAQGSVWGSEDSVRIIESDKAERSSENERNEFRKNKRNGSRQNENHGNTVGWV
                     ENPTSAATAKTVGFDNPTYATQQPTPSPEREGRGEGKTVAAQTNFSATAANPLPQERE
                     QSASASTFSDDLRPANLQQTAPSPVGEGWGEGKTVATQTNFSATSTNPLPQEREQSAS
                     ASTFSDDLRPANLQQPSPSPVGEGWGEGKTVATQTNFSATTANPLPNPLPQEGEQSAA
                     ASAVSNDPQPQKQPAPQKDRLKPLPLADIRTFQAWLKTAERENPRLLFLSRDDLMQHA
                     AAHITEEQFPKFWQTADGKFELSYRFEPHHPLDGVTLTLPLTVLNRLHAPSLEWLVPG
                     MLREKIQLLIKALPKQIRRICVPVPDFITQFLSQNPDRNAPILPQLAQAIAKTAGDIR
                     ILEQINQDEWAAFRLPEHCYFNLRIIDDGGQELAGGRKLHELQQQLGQAAAVTFRDNT
                     QEFERDNVTTWDIGTLPESIKFARGKQQLTGYLGLQKEKDGRIALRLCDTTEAAEQAH
                     RQGVIELMKLQLKEQVKDLNKGIQGFTQAAMLLKHINADTLRDDLTQAVCDRAFIGED
                     ELPRNEKAFKEQIKRARSRLPAVKEALSRYLQETAAAYAELNGKLGKHPLTHLLRLRL
                     QTLLAAGFATRTPWAQWPRLPIYLKAMTLRLEKYSSNPARDAAREADIQELEQMWQEK
                     NDGLVKQGLPVSDDLTAFKWMIEELRVSLFAQELKTPYPVSVKRLMKMWEDLN"
     gene            complement(20518..20940)
                     /locus_tag="ACFM6C_000290"
     CDS             complement(20518..20940)
                     /locus_tag="ACFM6C_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="very short patch repair endonuclease"
                     /protein_id="HFC6157807.1"
                     /translation="MTDIFTTSKRSFVMSKIHSKETKPEILVRKFLFSQGFRYRKNDK
                     RYAGKPDIVLPKYKTVVFIHGCFWYGHSCNKGHIPKSNTDFWLEKITKNCERDIKNET
                     ELEKIGFKVIVVWECELKNKAIGRERLNRLVREIKDAV"
     gene            complement(20944..22590)
                     /locus_tag="ACFM6C_000291"
     CDS             complement(20944..22590)
                     /locus_tag="ACFM6C_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02391 family protein"
                     /protein_id="HFC6157808.1"
                     /translation="MSEEKLKMSFEPTVIEHLGVKMYSHTVPAIAELIANAYDACATE
                     VEVRLFDKPEHKIVIKDNGIGMSFDEINDFYLRIGRNRREEKQASPCGRIPTGKKGLG
                     KLALFGLGNKIEISTIQGNERVTFTLDYAEIKKSERIYQPEFQKESVEPNTENGTTIT
                     LTELTKKQGYPLDNYVEHLSRLFDFPAQDFKIKVSLNGSEPKIIDGNLKYDLVTPQFE
                     WEYQDLATNISSLSSKFEQYEYSGLIQGKFITTEKPLKNNMKGITLFANGRMVNMPEF
                     FTDSESSHFYSYLTGWLSIDFIDNDDEDLIATDRTSLDWKHPKTSKLRVFLGEIVRAI
                     GQDWRKRRKKEKDDEVKGESGVDIENWKNKLPEKEREPVEVILNRLEDSELTNKEQAE
                     VISALHSIIPEYPYYHWRHLHQDLHTACNDFYNEKKDYLSAAIEAVKVFEDKVQKQTG
                     LHSIDGRELIEQAFGSKNSILLLTNNKTKAEQNLEDGLEQLACGTWTGFRNPVQHELR
                     ANLSPSIFNDKDALDLISLVSYLLRKVEQTKKRSKVVSSK"
     gene            complement(22604..23659)
                     /locus_tag="ACFM6C_000292"
     CDS             complement(22604..23659)
                     /locus_tag="ACFM6C_000292"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HFC6157809.1"
                     /translation="MKNSKLKAVDFFCGGGGMSYGMQSAGIQVLAGIDYEPSCKETYE
                     ANINAKFIQADVFELQPETLEKELGLKKNDDDLILIGCSPCQYWSVIQTDKRKSEKSK
                     SLLLEFQRFVEYFNPGYVVVENVPGILSRMKESRLDNFIKLLEEKGFTVHFGIHNTAD
                     YGIPQSRKRFTLIANRITKEKLEPVKYSGKRLTVRDVLGMENGFPKIMAGHQDETDFM
                     HSCAGLSDINLKRLALIPKNGGNRLAFAHIPELQLECFIGKDNSFKDTFGRLWWDKPA
                     PTITTKFFSISNGRFAHPEEDRALSLREGATLQSFPRNYVFKAGSRDKIARLIGNAVP
                     PMYAEKIGRAIVDNIEC"
     gene            23949..24101
                     /locus_tag="ACFM6C_000293"
     CDS             23949..24101
                     /locus_tag="ACFM6C_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157810.1"
                     /translation="MSGIYLPRLFPPHIAERGLLYFQQGKVLDVRKTSAGHYRAEVCG
                     SENYWV"
     gene            24358..24626
                     /locus_tag="ACFM6C_000294"
                     /pseudo
     CDS             24358..24626
                     /locus_tag="ACFM6C_000294"
                     /inference="COORDINATES: protein motif:HMM:NF017953.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008253 - 5'-nucleotidase activity
                     [Evidence IEA];
                     GO_process: GO:0009117 - nucleotide metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase"
     gene            complement(24716..25165)
                     /locus_tag="ACFM6C_000295"
     CDS             complement(24716..25165)
                     /locus_tag="ACFM6C_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilin protein"
                     /protein_id="HFC6157811.1"
                     /translation="MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINTVRA
                     ALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEGFCIRLNGIARGALDSKFMLKAV
                     AIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK"
BASE COUNT         6505 a         7482 c         5751 g         5547 t
ORIGIN      
        1 atccagcaca aaacgggatc ggtgattctt gtccgcaaga atcgttgatt ttctctatta
       61 cacggataat catcatgcgc ttcacacata ccatcccatt ttattccgta ttgtccaccc
      121 tcggtctttt tgccgtttcc cctgcttact catccattgt ccgcagcgat gtcgattacc
      181 aatattttcg cgactttgcc gaaaataaag gcgcgttcgc cgtaggtgca agcaatattt
      241 ccatccaaga caagcaaggc aaaatattag gcagggttct cagcggcatc cccatgcccg
      301 acttccgcgt cagcaaccgg caaaccgcta tcgccaccct ggttcacccc caatacgtca
      361 acagtgtcaa acacaacgtc ggctacggtt ccatacaatt cggcaacgac acccaaaacc
      421 ctgaagaaca agcctatacc taccgcctcg tatcacgcaa cccgcacccg gactacgact
      481 accaccttcc ccgcctcaac aaactggtta ccgaaatctc acctgccgca ctcagcagcg
      541 tacccttgct tggaaacggc cagccaaagg ccaatgccta cctcgatacc gaccgcttcc
      601 catactttgt acgactcggc tcaggcacgc aacaagtccg caaagcagac ggcacgcgta
      661 cacgaaccgc cccggcatac caatacctga ccggcggcac gccgctgaaa gtattggggt
      721 tccaaaacca cggcttactc gtcggcggca gcctgaccga ccaacccctt aacacctacg
      781 cagtcgccgg agacagcggt tcccccctgt tcgccttcga caagcatgaa aaccgctggg
      841 tgcttgcggg cgtactcggc acctacgccg gcttcgacaa cttcttcaac aaatacatcg
      901 tcacgcaacc cgaattcatc cgttccacca tccgccaata cgaaacccgg ctggatgtcg
      961 ggctgaccac caacgaactc atatggcgcg acaacggtaa tggcggcagc accctgcaag
     1021 ggctcaacga acacatcacc ctgcccattg caaacccttc gcttgccccg caaaacgaca
     1081 gcaggcacat gccgtctgca gatgccggca aaacgctcat cctatccagc aggttcgaca
     1141 acaaaacact gatgctggca gacaatatca accaaggcgc aggcgcattg cagttcgaca
     1201 gcaacttcac cgtcgtcggt aaaaaccaca catggcaagg tgcaggcgtt atcgtagccg
     1261 acggcaaacg cgtcttctgg caagtcagca accccaaagg cgaccggctc tccaaactgg
     1321 gcgcaggcac gcttatcgcc aacggacaag gcatcaacca gggcgacatc agcatcgggg
     1381 aaggcactgt cgtactcgcc caaaaagctg cttcagacgg cagcaaacaa gcattcaacc
     1441 aagtcggcat caccagcggc aggggcacgg ccgtcctcgc cgacagccag caaatcaaac
     1501 ccgaaaacct ctatttcggc ttcaggggcg gacggctcga cctcaacggc aacaaccttg
     1561 cctttaccca tatccgccat gcggacggcg gcgcgcaaat cgtcaatcac aaccctgacc
     1621 aagccgcgac actgacgctg accggcaacc ccatcctcag tcccgagcat gtcgagtggg
     1681 tgcaatgggg caaccgtccg caaggcaacg cggcggttta cgaatacatc aacccgcacc
     1741 gcaaccgtcg gaccgactac ttcatactca aacccggcgg caacccgcgc gaatttttcc
     1801 cgttaaatat ggaaaactca acaagctggc aatttatcgg caacaacagg caacaggccg
     1861 ccgaacaagt cgcccaagcc gaaaatgccc gccccgacct aattaccttc ggcggatact
     1921 tgggtgagaa cgcgcaaacg ggcaaagccg caccgagtta cagcaaaacc aatatcgaat
     1981 gggtgaatgg tccaaacacc ccacacaagc cctcgcccta tacgaatacg ccaacccgca
     2041 caggggcagg cgtaccgacg attaccgcct caaagaaagc ggcaaccccg gtgcctactt
     2101 cccatggaat gcctacagca cccaagactg ggaatttctc ggacatgacc ggcgaagcag
     2161 ccatagaaaa aacccgccat atcgcaaatg ccgccgtata cggccggccc gaataccgtt
     2221 acaacggcgc actcaacctg cactatcgtc ccaaacgcac cgacagcacg ctgttgctca
     2281 acggcggcat gaaccttaac ggggaagtct tgattgaggg cggcaatatg attgtgtcag
     2341 gcaggcccgt accccatgcc tacgaccacc aggccaaacg cgaacccgtt cttgaaaacg
     2401 aatggaccga cggcagcttc aaggctgcac ggttcaccct gcgaaaccat gcccgactga
     2461 cggcagggcg caataccgcg catctggacg gcgacataac cgcatacgat ctgtccggca
     2521 tcgacctcgg ctttatccaa ggcaaaacac cggaatgcta ccgctcctac catagcggca
     2581 gcacccactg cacacccaac gccgttttaa aagccgaaaa ctatcgtgca ctacctgcaa
     2641 cgcaagtacg cggcgacatt acccttaacg accgttcaga gctccgcctg ggcaaagcac
     2701 acctgtacgg cagcatccgt gccggcaaag acaccgcagt ccgcatggaa gcagacagca
     2761 actggacact ttcccagtcc agccacaccg gcgcactgac gcttgacggc gcacaaatta
     2821 ccctgaaccc cgatttcgcc aataatacac acaacaaccg cttcaacaca ctgaccgtca
     2881 acggcacact tgacgggttc ggcacattcc gattcctgac cggcatcgtc cgaaaacaaa
     2941 atgccccccc cctcaaactg gaaggggaca gccgcggcgc attccaaatc cacgtcaaaa
     3001 acaccggaca agaacctcaa acaaccgaat cgcttgcact tgtgagcctc aatccgaaac
     3061 acagccacca agcccgattt accctccaaa acggctatgc cgatttgggt gcctaccgct
     3121 acatcctccg caaaaacaac aacggataca gcctgtacaa cccgctcaaa gaggccgaac
     3181 ttcaaattga agccacgcgt gcggaacatg agcgcaacca acaggcatac aaccaattac
     3241 aggcaaccga catcagcaga caggttcaac atgactctga cgcgaccagg caggcactac
     3301 aggcctggca gaacagtcaa accgaacttg cccgcatcga cagccaagtc caatatctgt
     3361 ccgcccaatt gaaacagaca gacccgctga ccggcattct gacgcgtgcc caaaacctgt
     3421 gtgccgcaca aggatacagt gccgatatct gccgtcaggt tgccaaagcc gccgacacga
     3481 acgacctgac actcttcgaa accgaactgg atacgtatat agaacgtgta gaaatggccg
     3541 aatccgaact tgacaaagca cggcaaggcg gcgatgcgca agccgtcgaa acagcccggc
     3601 acgcctacct gaacgcactc aaccgtctgt cccgacaaat ccacagtttg aaaaccggcg
     3661 ttgccggcat ccgtatgccg aacctggccg aactgatcag ccggtcggcc aacaccgccg
     3721 tttccgaaca ggccgcctac aataccggcc ggcaacaagc ggaacgccgc atcgaccgcc
     3781 accttaccga tccgcagcag caaaacatct ggctggaaac cggtacgcaa caaaccgact
     3841 accatagcgg cacacaccgt ccctaccaac aaactaccaa ctatgcacat atcggcatcc
     3901 aaaccggcat caccgaccgt ctcagtgtcg gtacgatttt aaccgatgag cgcacaaaca
     3961 accgttttga tgaaggcgta tccgcccgaa accgcagcaa cggcgcacat ctgttcgtca
     4021 aaggggaaaa cggcgcactc tttgccgcgg cagatttagg ctacagcaac agccgtaccc
     4081 gatttaccga ttatgacggg gctgccgtcc gccgccacgc atgggatgca ggcatcaaca
     4141 ccggcatcaa aatcgatacc ggcatcaacc tcagacccta tgccggcatc cgtataaacc
     4201 gcagcaacgg caaccggtac gtactcgacg gcgcagagat aaacagcccg gcgcaaatcc
     4261 aaaccacatg gcatgccggc atccgtctcg ataaaaccgt cgaactgggt caagccaagc
     4321 tgacccccgc cttcagcagc gattactacc atacccgcca aaacagcggt tccgccctca
     4381 gcgtcaacga ccgtacctta ctgcagcaag ccgcccacgg cacactgcat accctgcaaa
     4441 tcgacgccgg atacaaaggc tggaacgcca aacttcatgc cgcttacggc aaagacagca
     4501 acaccgcccg ccacaaacag gcaggaatca aaataggcta caactggtaa caagccgata
     4561 aaaatgccgt ctggaacccg cgtttcagac ggcatttgcg ttaaaaatag taaaccgttc
     4621 caaaagggag tagaatagtg ccgtttccaa ccctgcgcct gtaccgtcag gcttttatta
     4681 tggaccttcc cagttcgttt ttactgaaca ccccatccga ttcaaacccg caataaccat
     4741 cccgccggaa tgtctccccg cacacggcgg gcggagcatt tatgagcatc gaacaaaccc
     4801 ctccgaacct tgaaaacaac ggtatcgaaa acgatgtaga acgcgtttcc gccgatttcg
     4861 accgtgtcca ctccctctgc gaaatcctcg aacctgcttt tgaacaaatc gaaaacggca
     4921 caccgctcga agacgcgccg ctgcgcgaca agctgaccga gctgaccgtc ctcttgagcg
     4981 agctgcaccc tgccgacgtg gcggcggtat tggaatcgct gccgccgcgc gaacgcaata
     5041 tcgtctggat tttggtcaaa ccggaagacg acggcgaagt attgctggaa gtatccgacg
     5101 cggtgcgcga aacgctgatc gagtcgatgg acaaggacga attgttggcg gcagttgacg
     5161 atttggacgc ggacgaattg gcggaactgg cagacgattt gccgcaccaa gtggtttacg
     5221 aagccttaca gacgcgtgat gaggaagaac gcgcccaagt caaggcggca atgtcctacg
     5281 aagacaacca agtcggtgcg attatggact tcgagttggt cagcatccgc gctgatgtcg
     5341 cctgtgaagt ggtgctgcgc tatctgcgcc gcttcgacag cctgcccgac cataccgaca
     5401 agatttttgt ggtcgatgaa aacgacgtgt tgcagggcgt gctgcccatc cgcaaacttt
     5461 tggtcgccga tcccgaagat ttggtggaaa acgtgatggc gaaagatgtc gtgcgtttcc
     5521 gcgccgaaga cgacgtggaa gaagcggcgc aggcgtttga acgctacgac ttggttaccg
     5581 cgcccgtcgt cgatgaaaac aaaaagctca tcggcaggat taccgttgac gagatggtgg
     5641 acgtaatccg cgaagaatcg gaagcggata tgctgaatat ggcgggtttg caggaagagg
     5701 aagacctgtt cgcccccgtc ttggattccg tcaaaaaccg ctggatgtgg ctcgccgtca
     5761 acctctgcac cgccttcctc gccagccgcg tcatcggcgc gtttgaaggc agcatcgaaa
     5821 aaatcgtcgc actcgccgcg ctgatgccca tcgtcgccgg tatcggcggc aactcgggca
     5881 accagacgat taccatgatt gtccgcgcaa tggcgatggg gcagttgacg ggaatgcagg
     5941 cggggcgctt gttgaaaaaa gaagtcggcg ttgccctagt caacggcatt atctggggaa
     6001 ccgtcatggg cgcggtttca tggctgctct acggcagcct cggcatcggg ctggttatga
     6061 ttgccgcgat gacgctcaac ctcctgctgg cggcaaccgt cggcgtattg attcccgtgg
     6121 taatggaaaa gttcggacgc gaccccgcgc tgggcagctc ggtgctgatt acggcggtaa
     6181 cggattccgg cggcttcctg attttcttgg gtctcgccac cctgttcctg ctttaaatgc
     6241 cgtccggacc cgcgcaaaaa tgccgtctga agcggaagct gcttcagacg gcatttgact
     6301 atttatcctt gttgcacaag attattggac ggtatgccgg ggcagccctt tggcaacgcc
     6361 gaccacatcc tccccgaaca gcgcgttgac atcggtttcg tcaaacacat atttgctgtg
     6421 gcagaaatcg caatcgactt cgatgctgcc ttgttccgcc accacgccgc cgacttcttc
     6481 cccgcccagc atcaacagca tatcgctgac tttgccgcgc gaacaggtgc atgaaaattc
     6541 aaacgtttcc ggctcgaaca cgcgcggcgg cgtttcgtgg aacaagcggt acaaaacatg
     6601 ttgcgcatcc aattctgcca actcgcccgc cgtcagcgtg cgcgccagcg tactgacgtg
     6661 ttcccatgcc tcttcatcca acacctcttc aggcagacgc tgcaccagca gaccgcccgc
     6721 cgcttcatcg cttgcagaca ggacgatgtg cgtatcaagc tgttcggaac gtttcatata
     6781 gttcatcaac atttgcgcga taccgtcgcc ttccaaaggc actacgccct gccagggttc
     6841 gccgtctttg ggctgcagcg tcagcacgaa tacgccgccc tcgcccaaaa gatcgaccaa
     6901 actttcatct tcaccgattt ctgccgcctc gtcccaccgc gcggttgcac ggacggtacg
     6961 gtcggaagtc gcttctgcaa ccagcatttt cagccgcccc tgcccctgaa cctgcacaat
     7021 cagcgtgcct tcgtttttaa ggttgcccga cagcagaacg ccggcagcca gtagctcacc
     7081 caaggcgcgg cggatggcgg cgggatagtt tttctgtttt acaatgtgct gccacacgtt
     7141 ttccagacgg acgtgcagcc cgcgcacggg catatcgtcg aagataaagc gggtacgcac
     7201 atcggcgcgg tcgatggcgg tttgattcat gattttctct gactgattgt tcggatggcg
     7261 gctatatggt tgcggtcggc gcgaaaacaa gacggacggc ggatgcgctt cccaaattat
     7321 caataaatta tataaaaatc aacatattaa ctcaatctaa caagccgttt tttgccaaac
     7381 agccgttttt ttatatacaa tcaacaagat attttcgact gatacagcat aacatcgcac
     7441 ggcggcacga tgcctcctgc gcggaaacac cgatatggat tcttttttca aaccggcagt
     7501 ttgggcggtt ttgtggctga tgtttgccgt ccgccccgcc cttgccgacg agttgaccaa
     7561 cctgctcagc agccgcgagc agattctcag acagtttgcc gaagacgaac agcccgtttt
     7621 acccatcaac cgagcccccg cccggcgggc gggcaatgcc gacgaactca tcggcagcgc
     7681 gatggggctt aacgaacagc ccgttttacc cgtcaaccga gtccccgccc ggcgggcggg
     7741 caatgccgac gaactcatcg gcaacgcgat ggggcttaac gaacagcccg ttttacccgt
     7801 caaccgagcc cccgctcggc gggcgggcaa tgccgacgaa ctcatcggca acgcgatggg
     7861 acttttgggt attgcctacc gctacggcgg cacatcggtt tctaccggtt ttgactgcag
     7921 cggcttcatg cagcacatct ttaaacgcgc catgggcatc aacctgccgc gcacgtcggc
     7981 agaacaggcg cggatgggta cgccggttgc ccgaagcgaa ttgcagcccg gggatatggt
     8041 gtttttccgc acgctcggcg gcagccgcat ttcccatgtc ggactttata tcggcaacaa
     8101 ccgcttcatc cacgcgccgc gcacggggaa aaatatcgaa atcaccagcc tgagccacaa
     8161 atattggagc ggcaaatacg cgttcgcccg ccgggtcaag aaaaacgacc cgtcccgctt
     8221 tctgaactga tttcccaagg aatacgcaat gagtatgccc gaaatgccca aatggtacga
     8281 cgatgacgga cagatcgtgt cctgtaccga aaaggtcaaa gtgatgtccg aaaatatggc
     8341 cgagctgtat cagacggcac aagacgcgtt tgaagacgcg ctgctgatgg gttgcggcga
     8401 acgtcagttg cgcgattacc tgctcgcgct gattgaaggt ttggaaaatc cctaccgcaa
     8461 agtctgaaca cgccccggtt gctgcggcac ggtttatccg tgccgttttt gcgtttgtgc
     8521 gcggcttcgg cttttcagac ggcatatttg acgttatgat taaacagtta acaagattta
     8581 tcacaacgcc gtcaaaagac agacacacaa catgaacatc atccgcgcgc tcctcatcat
     8641 cctcggctgc ctcgccgccg gcgaaaccgc cgttttccta gcaggcatca aactgcccgg
     8701 cagcatcgtc ggcatgggcg tgctgtttgc gcttttgcag gcgggttggg tcaaaacgtc
     8761 ttggctgcaa cagcttaccg acgcgctgat ggcgaatctg acgctgtttc tcgtgccgcc
     8821 ctgcgtggcg gttatcagct atttggattt gattgccgac gattggtttt cgatactggt
     8881 ttccgcctcc gccagcactt tgtgcgtact gctggttaca ggcaaggttc accggtggat
     8941 acggggtatt atccgatgaa cgaaatcctc aggcagccca gcgttctgct tttcctcacg
     9001 cttgccgtgt acgcgattgc gattatcgtg cgcacgcgca cgggtaatat cttctgcaac
     9061 cccgtactcg tcagcactat cgtgctgatt gcctacctga aaatcctcgg tatcgattat
     9121 gcggtgtacc acaacgccgc gcaattcatt gatttttggc taaaacccgc cgtcgtcgtg
     9181 cttgccgtgc cgctctacca aaaccgccgt aaaatcttca accagtggct gcccgtcatc
     9241 gtttcacagc ttgcgggcag cgttacgggc attgttacgg ggatgtattt tgccaaatgg
     9301 ctgggcgcgg aacgcgaagt cgtcctctcg ctcgcgtcca aatctgttac caaccccatc
     9361 gccattgaaa tcacccgctc catcggcggc attcccgcca ttaccgccgc caccgtcatc
     9421 attgccggtc tggtcggaca gattgccggt tacaaaatgc tgaagaacac agtcgtcatg
     9481 ccctcgtccg tgggtatgtc gctcggcacg gcttcgcacg cgatggggat tgccgcctcg
     9541 ctcgaacgca gccgccgcat ggcggcatac gcgggactgg ggctgacgtt caacggcgta
     9601 ctgaccgcgc tgattgcgcc gctgctcatc cccgttttgg gattttgaac ccgtttcaga
     9661 cggcatttca gcccatgctg tctgaacgcc gacacactcg caaggagaac cgttatggct
     9721 gtcaacctga ctgaaaaaac cgccgaacaa ctgcccgaca tcgacggcat tgccctctac
     9781 accgcccaag caggcgtgaa gaagcccggg cataccgacc tgacactgat tgccgtagcc
     9841 gccggcagca ccgtcggtgc agtcttcacg accaaccgtt tctgtgccgc gcccgtccac
     9901 atcgccaaat cgcacctttt cgacgaagac ggcgtgcgcg ccctcatcat caacacgggc
     9961 aacgccaacg cgggtacggg cgcacagggc agaatcgatg ctttggcagt gtgtgccgcc
    10021 gccgcccggc aaatcggctg caaaccgaac caagtgctgc ccttctccac cggcgtgatt
    10081 ctcgaaccgc tgcccgcaga caaaatcatc gccgcgctgc ccaaaatgca gcctgccttc
    10141 tggaacgaag cggcacgcgc catcatgacc accgacaccg tgcccaaagc cgcctcgcgc
    10201 gaaggcaagg tcggcgacaa acacaccgtc cgcgccacgg gcatcgccaa aggctcgggc
    10261 atgattcatc ccaatatggc gaccatgctc ggtttcatcg ccaccgatgc caaagtttcc
    10321 caacccgtcc tccaactgat gacgcaggaa atcgccgacg aaaccttcaa caccatcacc
    10381 gttgacggcg acaccagcac caacgacagc ttcgtcatca tcgccaccgg caaaaacagc
    10441 caaagcgaaa tcgacaacat cgccgacccg cgttacgccc aactcaaaga attgttgtgc
    10501 agcctcgcgc tcgaactcgc ccaagccatc gtccgcgacg gcgaaggtgc gaccaagttc
    10561 atcaccgtcc gcgtcgaaaa cgccaaaacc cgcgacgaag cccgccaagc cgcctacgcc
    10621 gtggcacgtt cgccgctggt caaaaccgcc tttttcgcct ccgaccccaa cctcggcagg
    10681 ctgctcgccg ccatcggtta tgccggcgtt gccgacctcg ataccgacct cgtggaaatg
    10741 tatctcgacg atattttggt tgccgaacac ggtggacgcg ccgcaagcta caccgaagca
    10801 caagggcagg cggtgatgtc gaaggccgaa atcaccgtcc gcatcaagct gcatcgcgga
    10861 caagccgccg ccaccgtcta tacctgcgac ctgtcgcacg gatacgtttc catcaacgcc
    10921 gactaccgtt cctgactcga cacggcttca gacggcatac ataaaatgcc gtctgaaccg
    10981 ccggacaaca taccatgacc tccacattcc cccgccgcct cgcccgcaaa atccgccaaa
    11041 cccgccgcct gtcgcgcaaa agcatcgcct ttctgttcct tttggcaggt tcggcactcg
    11101 tcgccctgac cgcgctgttt tttgcccatc ttgccgattt tgcgctggaa ctgaacgcca
    11161 aactggttca acaatacccg tggttcgcgt gggtcgcgct tcctttgggt ttaccgctta
    11221 ttgcgtggct cacacgcaaa ttcgccccct tcaccgccgg cagcggcatc ccgcaggtca
    11281 tcgcctcact gtcgctgccc tacggcgcac agaaaacgcg gctgatccgc ctcgggcaga
    11341 cgctgctgaa gattccgcta acctttttgg gtatgctgtt cggcgcgtcc atcggacgcg
    11401 aaggtccgtc cgtgcaggtc ggcgcgacag tgatgggcgc gtggggcgcg tggtgcaaga
    11461 aacacggctt ggcattcaaa gggatgcagg aaaacgattt gatggcggcg ggcgcggcgg
    11521 gcggtttggc agccgcgttc aacgcgccgc tggcgggcgt gattttcgcc attgaggaac
    11581 tcgggcgcgg catcatgttg cgctgggaga ggcaaattct tttgggcgtg ctcgcctccg
    11641 gtttcataca ggtcgccatt cagggcaaca acccgtattt ttccggcttc aacggcggcg
    11701 tattggaaca tatctttctg tgggtcgcac tgtccggcct ggtttgcggc gcggcgggcg
    11761 gcctgttcgg acgtttgctc tatcgcggtg cggcggcgtt tgcaccgcgc aagatacgcg
    11821 gcttcatccg caaccgtccg ctgctgctgg cggcactgat ggggctgctg ctcgccctgc
    11881 tcggcacgtt ctaccaaggc aaaacctacg gcactggcta ccacgaagcc gcccaagccc
    11941 tgcacggcat ctacgaagcc cccttcggac tcgccgccgc caaatggctc gccaccgtat
    12001 tcagctattg ggcaggcatt ccgggcggca ttttcactcc ctcgctgacc ataggcgcgg
    12061 ttttgggcga gcatatcgcc gccatcgccg acatatcgca gggtgcaaac atcatcgtcc
    12121 tcatctgcat ggcggcattt ctggcgggcg cgacacaatc cccgattact tccgccgtcg
    12181 tcgtcatgga aatgacgggc ggacaaagcc tgctgttttg gatgctaatt gcctgcattt
    12241 tcgcctcgca ggtttcgcgc cagttttcgc cgcgtccgtt ctaccacgca tcgggaatgc
    12301 gcttccgcca gcgcgtgctt caagaaaccg ccgcccaaac cggcaatgcg cccgcaagac
    12361 cgcaaacagc aaacagcaaa acgggaatgc cgtctgaaaa ttaaaacgcc cccgatcaaa
    12421 cgccggcagc cgccttgatt tgaataccgt tccgccgccg cttgaaattt cagcaacaat
    12481 gccgtctgaa cgacagaatg cggttttcag acggcatttc cccatcccga tattgcctaa
    12541 acaaaaccga agcgtttgct ataattctat tttttaccgc acacgcacca atcatgtttc
    12601 ccgatttctc ccaaaccctc tccaaagacc gccacttcct acgttccgcc ttcaaaaatc
    12661 ccaacaaata cggcggcttg tccaaagtcg aagaaaaata ccaaaaatcg cacgaaatct
    12721 ttttgaagcg tttggctgcc ttgcccaaac ccgaattcga taacaccctg cccgttcacg
    12781 agaagctcga cgaaatcaaa aaagccattg ccgagaatca ggtaacgatt atttgcggcg
    12841 aaaccggttc gggcaagacc actcagttgc ccaagatttg tctggaactc gggcgcgggg
    12901 cggcgggttt gatcgggcat acccagccgc gccgtttggc ggcgcgttcc gtagcagagc
    12961 ggattgccga agagctgaaa tccgaaatcg gcagcgcggt cggctataaa gtgcgcttca
    13021 ccgaccacac ctcgcgcgat gcctgcgtca agctgatgac cgacggcatc ctgctggcgg
    13081 aaacccagac cgaccgttat ctcgccgcct acgacacgat tatcatcgac gaagcgcacg
    13141 agcgcagcct gaacatcgac ttccttttgg gctatttgaa acaactcctg ccgcgccgcc
    13201 ccgatttgaa agtcatcatc acctcggcaa cgatagacgc agaacgcttt tcccaacact
    13261 tcaacggcgc gcccgtttta gaagtgagcg ggcgcaccta tcccgtcgaa atcctctaca
    13321 gcccgctgac cggcaaagac gaagacgacg cagaagtcga gctgaccgac gcgattgtcg
    13381 acgcggcgga cgaattggca cgctacggcg aaggcgatat tttggtgttc ctgccgggcg
    13441 aacgcgaaat ccgcgaagcc gccgaagccc tgcgcaaatc cacgctacgc cgcaacgacg
    13501 aaatcctgcc cctgttcgca cgcctgtcgc acgccgagca gcacaaaatc tttcacccca
    13561 caggcgcgaa acgccgcatt gtgttagcaa ccaacgtcgc cgaaacctcg ctcaccgtgc
    13621 cgggcatcaa atacgtcatc gacaccggcc tcgcacgcgt caaacgctat tccgcacggg
    13681 cgaaagtgga gcagctccat gtcgaaaaaa tctcccaagc cgccgcccgc caacgctccg
    13741 gccgctgcgg ccgcgtctcc gcaggcgtat gtatccgatt gttttcagaa gaaaatttca
    13801 acaaccgccc cgaatttacc gaccccgaaa tcgcccgcag caacctcgcc gccgtcatcc
    13861 tgcgcatggc atcgctgaaa ctcggcgacg tagcggcatt cccattttta gaaatgcccg
    13921 attcgaggta tattaatgat gggtttcagg tgttgctgga attaggggca gtggaggccg
    13981 cctgaaaaca agtaggatat acacttctac ctgacaaaga ccaacaaacg ataaaactac
    14041 ggcacatcta gatgcccaac ctacaacatt gcacacggta aaaacatgaa acacttactc
    14101 atcgattttg aaaacgtcca gccgcaaaac ttagacaaat tactaaccga aaatacccat
    14161 atttggctat ttataggtgt attacacaaa atgttaccta ttagtctggt gcaatcccta
    14221 ctacgtttcg gcgaacgtgt ccatcttgtc cagttacaaa aaacagggaa aaacgcattg
    14281 gatttttacc tgtcctatta cctcggacaa attaccgcca cagaccccaa tgcccaaatc
    14341 ggcatactct cgcgtgatgg aggatacgat gttctggtcg aacatatttt gaaaaaccac
    14401 caggcgaagg gtatcgtgcg cctagccaat atagatgaag tacaacatca gaaaattact
    14461 accgaaccgc cgtcagcatt gcgggaaaac actcctcagc ctgaaaccac cctcaaacca
    14521 cagcaaccat taacttccta tttccaagca gccctaactg cactgcgccg ccccgacgct
    14581 ttccgcccct gccgcctgca taacctgcga caaaatctgc gtaagcatat tttgagtgat
    14641 ttgtttaaag aaaaaaccga tgaagaatgc gaaataacca ctgctaacgt tatcaataaa
    14701 ctcaaagcac aaaacttcat cagcattgat gaacaggaaa ccgtttccta ccatctcagt
    14761 gataatgatt tgttacaaag aatccaacgc catattttaa gccaacgtcc caaaacctac
    14821 gctgattttc aagccgtcgt gcaaaaccga gcagatgcac ttcacttaac agtcggtacc
    14881 aacgacattc aatcctttgc gcgacatttg cgcgaccaaa acctgatccg ccaaaacaat
    14941 gggaaaattg aatatgcacc gtttactgaa cctaaaccac agccaacgcc caagcagcct
    15001 aaaaaaaccg catgggaacc tgatgaaatt atttggaaaa aagtgattgc cgcgttatcg
    15061 ttaaagaacc gtcctaataa aaccaaaact ttacgcaata caatccaggc actcacaaaa
    15121 tccaatgcac aagaaactga caaactgcta caacatttac aagataccca agtcctacgt
    15181 attgacggta ctaaaattgt gtatatcaag taggatgggc atttatgcct gacctacaaa
    15241 accaaaaaca acctaccacc cttaatcaac tccacaaacc cttttcagac aacctcgttt
    15301 tttgaaaaac aatctgtaaa cagatagctg ctgaagaata ccgttgccga gccccaaaac
    15361 ccgtcctgca acttttattg tgaactgccc attatgaaaa aatccctttt cgttctcttt
    15421 ctgtactcat ccctacttac cgccagcgaa atcgcctatc gctttgtatt cggaattgaa
    15481 accttaccgg ctgcaaaaat ggcagaaacg tttgcgctga catttgtgat tgctgcgctg
    15541 tatctgtttt cgcgttataa aacttcgcgg ctgctgattg cgctgttttt cgcgttcagc
    15601 attattgcca acaatgtaca ttatgcggtt tatcaaagtt ggatgacggg tattaactat
    15661 tggctgatgc tgaaagaggt taccgaagtc ggcagtgcgg gcgcgtcgat gttggataag
    15721 ttgtggctgc ctgcgttgtg gggcgtgttg gaagtcatgt tgttttgcag ccttgccaag
    15781 ttccgccgta agacgcattt ttctgccgat atactgtttg ccttcctaat gctgatgatt
    15841 ttcgtgcgtt cgttcgacac gaaacaagag cacggtattt cgcccaaacc gacatacagc
    15901 cgcatcaaag ccaattattt cagcttcggt tattttgtcg gacgcgtgtt gccgtatcag
    15961 ttgtttgatt taagcaggat tcccgccttt aagcagcctg ctccaagcaa aatcgggcag
    16021 ggcagtgttc aaaatatcgt cctgattatg ggcgaaagcg aaagcgcggc gcatttgaag
    16081 ctgtttggct acggacgcga aacttcgccg tttttaaccc ggctgtcgca agccgatttt
    16141 aagccgattg tgaaacaaag ttattccgca ggctttatga cggcagtgtc cctgcccagt
    16201 tttttcaatg cgataccgca cgccaacggc ttggaacaaa tcagcggcgg cgataccaat
    16261 atgttccgcc tcgccaaaga gcagggctat gagacgtatt tttacagcgc gcaggcggaa
    16321 aacgagatgg cgattttgaa cttaatcggt aagaaatgga tagaccatct gattcagccg
    16381 acgcaacttg gctacggcaa cggcgacaat atgcccgatg agaagctgct gccgttgttc
    16441 gacaaaatca atttgcagca gggcaggcat tttatcgtgt tgcaccaacg cggttcgcac
    16501 gccccatacg gcgcattgtt gcagcctcaa gataaagtat tcggcgaagc caatattgtg
    16561 gataagtacg acaacaccat ccataaaacc gaccaaatga ttcaaaccgt attcgagcag
    16621 ctgcaaaagc agcctgacgg caactggctg tttgcctata cctctgatca tggccagtat
    16681 gtgcgccaag atatctacaa tcaaggcacg gtgcagcccg acagctatat tgtgcctctg
    16741 gtgttgtaca gcctggataa ggccgtgcaa caggctgcca accaggcttt tgcgccttgc
    16801 gagattgcct tccatcagca gctttcaacg ttcctaattc acacgttggg ctacgatatg
    16861 ccggtttcag gttgtagcga aggctcagta acgggcaatc tgattacggg cgatgcaggc
    16921 agcttgaaca ttcacgacgg caaggcggaa tatgtttatc cgcaataagc ggcgtgaaaa
    16981 ccaataaaga caaatttaga tgatgtcggg gaagatgccc gaccgacaag actatgcaaa
    17041 atatgaaaaa ccaaatacgc ggatcaggca tggatgcacg atccaacccg gccaatgttt
    17101 cagacggcct gcaaaacagt tcgggccata tcggtaccaa cacgcgctac cgtctgacca
    17161 aactcggcga acaaatggcg cgcctgccca tcgacccgaa aatcgcgcgc attttgttgg
    17221 cggcgaagaa gcacgactgc atggcggaaa tattggtgat tgcgtccgcg ctattgattc
    17281 aagacccgcg cgagcggccg ctggaggcac gcgatgccgc cgccaaggcg catgaacgct
    17341 ttaccgacaa gcaatccgat ttccttgcct acctgaatat ttgggacagt ttccagcgcg
    17401 agcgcgacaa aggtttgtcc aacaagcagc tggtgcaatg gtgccgccaa tatttcctgt
    17461 cgcacctgcg tatgcgcgaa tggcgcgagc tgcaccacca gcttgcccaa accgcgattg
    17521 aaatgggttt gaccaccaag gaagccgctt tcagacgacc tcccgaaatc aggcagctca
    17581 cgtcgtctga aaaccaaggc gaccaagacc tatccgccaa actcaagcaa aaacaactgg
    17641 ataaaaagca acaccgcgcc caaatccgcg ccgccaaaga agcgggctac gaacaaatcc
    17701 accgcgccct gctcactggc cttatcgcca acgtcggcat gaaatcgccc gacggcaacg
    17761 actacaccgg cgcgcgcggc agccgcttcc accttttccc cgcctccgcc ctgttcaaag
    17821 ccaagcccaa atgggtgatg gcggcagaat tggttgaaac cacgcgcctt tacgcgcgcg
    17881 acgtcgccgt tatccagccc gaatggatag agcaggaagc gccgcacctc gtccgctatc
    17941 attatttcga gccgcattgg gaacaaaaac gcggcgaagt cgtcgccagc gaacgcgtga
    18001 cgctttacgg cctgaccgta ttgccgcgcc gccccgtgtc ttacggcaaa gttgcccccg
    18061 aagaagcgcg cgaaatcttt atccgcagcg cgttggtggc gcaggaatgc gatttgaaag
    18121 cggatttttt tgtccacaac aaaaagctga ttaaagaaat taccgaactc gaacacaaat
    18181 cgcgcaagca agacgtgctg gtcgatgacg aagccctgtt tgcgttttat aacgaacgac
    18241 tgcccgaaat ggcttggaaa gacgcgcaag gcagcgtttg gggaagtgaa gattccgtac
    18301 ggattattga atctgacaaa gccgagaggt cgtctgaaaa tgagcgcaac gagtttcgta
    18361 aaaacaagcg taatgggtct cgccaaaatg aaaatcacgg caacaccgta ggttgggttg
    18421 aaaacccaac atcagccgca actgcaaaaa ctgttgggtt tgacaaccca acctacgcta
    18481 ctcagcaacc caccccctcc cccgagaggg agggtcgggg agagggcaaa acagttgccg
    18541 cacaaaccaa cttttccgca accgcagcaa accctctccc gcaggagagg gaacagagtg
    18601 cctcagcttc aacgttttca gacgacctgc gtcctgcaaa tctgcagcaa accgccccct
    18661 cccccgtggg ggagggctgg ggagagggca aaacagttgc cacacaaacc aacttttccg
    18721 caacctcaac aaaccctctc ccgcaggaga gggaacagag tgcctcagct tcaacgtttt
    18781 cagacgacct gcgtcctgca aatctgcagc aaccctctcc ctcccccgtg ggggagggct
    18841 ggggagaggg caaaacagtt gccacccaaa ccaacttctc cgcaaccaca gcaaaccctc
    18901 tccctaaccc tctcccacag gagggggaac agagtgccgc agcttcagcg gtttcaaacg
    18961 accctcaacc ccaaaagcag ccagcacccc aaaaagaccg tctgaaaccc ctccccctcg
    19021 ccgacatccg caccttccaa gcctggctca aaaccgccga acgcgagaac ccgcgcctgc
    19081 tgttcctcag ccgcgacgat ttgatgcaac acgccgccgc acacattacc gaagaacaat
    19141 tccccaaatt ctggcaaacc gcagacggca agttcgaact cagctaccgc ttcgagccgc
    19201 accacccgct cgacggcgtt accctcaccc taccgctgac cgtcctcaac cgcctgcacg
    19261 cgccgtcgct cgaatggctg gtgcccggta tgttgcgcga aaaaatccag ctgctgatta
    19321 aagctctgcc gaagcaaatc cgccgcattt gcgtgcccgt acccgatttc atcacccaat
    19381 ttttaagcca aaaccctgat cgcaacgccc ccatcctgcc ccaacttgcc caagccatcg
    19441 ccaaaaccgc aggcgacatc cgcatactcg agcaaatcaa ccaagacgaa tgggccgcgt
    19501 tcaggctgcc cgaacactgc tatttcaacc tccgcattat cgacgacggc ggacaagagc
    19561 ttgccggcgg ccgcaaactg catgaattgc aacaacagct cggccaagcc gccgccgtta
    19621 ccttccgcga caacacccaa gaattcgagc gcgacaacgt gaccacatgg gacattggca
    19681 ccctgcccga atccatcaaa ttcgcacgcg gcaaacaaca gctcaccggc tacctcggtc
    19741 tgcaaaaaga aaaagacggc cgcatcgccc tgcgcctgtg tgacaccacc gaagctgccg
    19801 aacaggcaca ccgtcaaggc gtcatcgaat tgatgaagct gcaattaaaa gagcaggtaa
    19861 aagacctgaa caaaggcatc caaggcttta cccaagccgc catgctgctc aaacacatca
    19921 acgccgacac cctgcgcgac gacctcaccc aagccgtttg tgaccgcgcc tttatcggcg
    19981 aagacgagct gccgcgcaac gaaaaagcct tcaaagaaca aatcaaacgc gcccgcagcc
    20041 gcctgcccgc cgtcaaagaa gccctcagcc gctacctgca ggaaaccgcc gccgcctacg
    20101 ccgaactgaa cggcaaactc ggcaaacacc cattgaccca ccttctaaga ctacgcctgc
    20161 aaaccctgct cgccgccggc ttcgccaccc gcaccccgtg ggcacaatgg ccgcgcctcc
    20221 ccatctacct caaagccatg accctgcgcc tcgaaaaata cagcagcaac cccgcccgcg
    20281 acgcagcccg cgaagccgat atacaggaat tggaacaaat gtggcaggaa aaaaacgacg
    20341 gtttggtgaa acaaggacta cccgtttcag acgacctcac cgcgtttaaa tggatgatcg
    20401 aagaattgag ggtgtcgctg ttcgcgcagg aattgaagac gccttatccg gtgtcggtga
    20461 agcggttgat gaagatgtgg gaggatctta attaaaggaa gatgccgtct gattttttca
    20521 gacggcatct tttatttccc tgaccaaccg atttaatcgc tccctaccaa tagctttatt
    20581 ttttaattcg cactcccaaa cgacaatcac tttgaaaccg atcttttcca gctcggtttc
    20641 atttttaata tcacgttcgc aattttttgt gattttttcc aaccaaaaat ccgtattgct
    20701 tttcgggata tgtcctttat tacaagaatg cccgtaccaa aaacagccgt gtataaacac
    20761 gactgtttta tatttcggca aaacgatatc cggtttgcct gcatagcgtt tatcgttttt
    20821 ccgataacga aaaccttggg agaaaagaaa tttccttacc aatatttccg gtttggtttc
    20881 tttgctatgg atttttgaca tcacgaaaga acgtttggat gtagtgaaaa tatcggtcat
    20941 aaattacttg gaagatacca ccttcgatcg tttttttgtc tgttccactt ttcttaacaa
    21001 atacgaaacc aagcttatta aatccaaagc atccttatca ttaaaaatac taggagataa
    21061 atttgctctt aactcatgtt gtacaggatt tctaaatcca gtccatgttc cgcatgcaag
    21121 ctgttcaaga ccatcttcta aattttgttc cgccttcgtt ttgttattcg ttaatagaag
    21181 tatagaattt ttactcccga aagcttgttc aatcaattct cttccgtcta tgctatgaag
    21241 acctgtttgc ttctgaacct tatcttcgaa aactttaact gcctcgattg cagcacttaa
    21301 ataatccttc ttttcattgt aaaaatcatt acaggcagta tgcaaatcct gatgcaaatg
    21361 ccgccaatga tagtaaggat attctggaat aatactatgt aaggcagaga ttacttccgc
    21421 ttgctcttta tttgtaagct ccgaatcttc caaacgattc aaaataactt ctactggttc
    21481 cctttccttt tctggcaatt tgtttttcca attttcgata tcaaccccgc tttcaccttt
    21541 cacttcgtca tctttttctt tttttcttct ttttctccaa tcttgcccga tggctcgaac
    21601 gatttcccca aggaaaaccc gtaactttga agttttagga tgcttccaat ccaatgatgt
    21661 cctatctgta gcaattaaat cttcatcatc attatctata aaatcaatac ttaaccatcc
    21721 tgtcagatag gaatagaaat ggctggattc gctatcagtg aaaaactcgg gcatatttac
    21781 cattctgccg ttggcaaaca aggtaatacc tttcatatta ttctttaaag gtttttccgt
    21841 tgtaatgaac ttaccttgta ttaatccgct gtattcatac tgttcgaatt ttgaagataa
    21901 cgatgaaata ttggttgcta gatcctggta ttcccattcg aattgtgggg taacaagatc
    21961 atattttaga tttccatcaa tgattttggg ttccgagccg ttcaagctta ctttgatttt
    22021 aaaatcctga gccggaaaat caaacaagcg ggaaagatgc tccacataat tatctaacgg
    22081 gtatccttgt tttttcgtca gttcggttaa agttatggtt gttccgtttt cggtattggg
    22141 ttcaacagat tctttctgaa actccggttg ataaatacgc tcactttttt taatctctgc
    22201 ataatccaaa gtaaaagtaa cccgttcgtt tccttggata gtagagattt caattttgtt
    22261 gccaagcccg aataatgcca atttaccaag acctttttta cccgttggaa ttcttccgca
    22321 cggggaggct tgtttttctt cccttctgtt ccgaccgatt ctcaaataaa aatcattgat
    22381 ttcatcgaag ctcattccta taccattatc tttaataaca attttatgct ccggtttatc
    22441 gaataaccta acttccactt ccgtagcaca tgcatcgtag gcattcgcta tcaactcggc
    22501 aatcgcagga acagtgtgcg aatacatctt tacacccaaa tgttcgatta cggttggctc
    22561 gaaactcatt ttcaattttt cttcagacat gttttctcct tttctaacat tcgatattat
    22621 caacaattgc cctgcctatt ttttccgcat acatcggagg aacggcatta ccaatcaaac
    22681 gggctatctt gtccctgctg cccgctttaa agacatagtt acgagggaac gattgcaatg
    22741 ttgcaccttc gcgcagggat aacgccctat cttcctcagg atgggcaaac cttccgttgg
    22801 aaatactaaa gaatttggtc gttatggtag gtgcgggctt atcccaccat agcctaccga
    22861 acgtgtcttt aaaactattg tcttttccga taaaacattc cagctgtaat tcgggaatat
    22921 gcgcaaaagc caaacggttt cctccgtttt taggtatcaa agccaatcgt ttcaaattga
    22981 tgtcagataa tcccgcacaa ctatgcatga aatccgtctc gtcttgatgc cctgccataa
    23041 ttttgggaaa gccgttttcc attcccaaaa catcgcgtac cgtaagccgt ttgcccgaat
    23101 acttgactgg ttccagcttt tctttggtta ttctgtttgc aattaacgta aatcttttac
    23161 ggctttgggg aattccgtaa tcagccgtat tgtgaatacc gaaatggacg gtaaatcctt
    23221 tttcttccaa taactttatg aaattatcaa gcctgctttc tttcattctg ctcagaattc
    23281 ccggtacgtt ctctacaaca acatatccgg gattgaaata ttctacaaac cgctgaaact
    23341 ccaaaagcaa actcttggat ttttccgatt ttcttttgtc tgtttgaata acactccaat
    23401 attgacaagg actacaacct ataagaatca aatcatcatc attctttttt aacccgagtt
    23461 ctttttccaa ggtttcaggc tgcaattcaa aaacatcagc ctgtataaat ttggcattta
    23521 tattggcttc atatgtttct ttgcagctgg gttcgtaatc tatcccggct aaaacctgaa
    23581 taccggcgga ttgcattcca tagctcattc cacctccgcc acagaaaaaa tcaaccgcct
    23641 ttaacttact gtttttcatt tctatttaaa taattagact agtgagaact aactttatat
    23701 aacatataat ttattgctta tcaaaaataa tttgagattt tattaaaatt catgcatcta
    23761 aataagcaga acttaatttc ctccaaacga gcggatgtct tcaaatgcac acttcacaga
    23821 aaggtcgtct gaaacccatt ttcagacgac ctttttccac ttcccaaaac aagaattccc
    23881 accccctccc caaacgtcgc ccgaaccagt aaacttctca tatttcaaca actccttgga
    23941 agcaaaccat gtctggtatc tacctacccc gcctattccc gccccatatc gccgaacgcg
    24001 gcctgttgta ttttcagcag ggcaaggttc tcgatgtccg aaaaacttcc gccgggcatt
    24061 atcgggcgga ggtgtgcggt tcggaaaact attgggtata gttgaagctg gatagtgatt
    24121 tgtatattaa agacgaaggc tgcaattgtc cttatatcta agagtgcaaa cataccttaa
    24181 attactatat tgcataggca aaatacaagc ctataacgaa ttggaaacaa aatgccgtct
    24241 gaaaacatct tcagacggca ttataaaatc tgttcacctt ttcagatgag taatgtacac
    24301 ccttatacaa tttttgctac tatgccccat aaatccacgg ctaaagatat ccttattatg
    24361 tcctatgatt tatcgaaacg acttgtaatc ggcttagcat caagtgccct attcgactta
    24421 tccgaatcgg ataatatatt tagaatggaa ggggcagaaa cctataggca atatcagaga
    24481 gaaaaacaaa accatcccct aaaaaaggcg ttgtctttcc atttattaaa aaacttctgt
    24541 caatcaatga aataaaccca aacgacccaa cgattgggtt tattctttta tccagaaaca
    24601 atccagatac agattacgag tcataactat aggcttaata ttacacgatt ttcattccat
    24661 caaggcggaa aaccgcacaa atactgaaac actatcgatc gatttgtaaa caagcctact
    24721 taagtaactt gcagtcctta tcatttcctt taaaataatc cagcccgtca ctacacgaac
    24781 tggcggactt cttgcaaata aaggttacta gattttcatt catcttaata ataaaaggat
    24841 ttttatcttt atctatggct accgccttca acatgaattt actgtctaag gccccgcgcg
    24901 cgattccatt caaacggata caaaagcctt ctgcctcttt aatcggcaaa cttggccatt
    24961 tggtagatgt ttgtttaaat ctcccattct gcagataaaa cttttccata aaatgtgcat
    25021 tttctaacaa ggctgcccgc actgtattta tctttgcttt ctcaacataa ttgcgatagc
    25081 tcggataaac aattaaagca agtacagaca atatcaagac cactgatatt aattcaacca
    25141 gcgtaaaccc ccgattatca gtcattactt tacttccaat aagaacagat tattcaacat
    25201 atttctttga acagacttac tatcccattc agcagtatgc atatttccca ctctattttt
    25261 tatccgcggg cagcactggt ttggc
//
LOCUS       DAXHPV010000011        24735 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.011, whole genome shotgun sequence.
ACCESSION   DAXHPV010000011 DAXHPV010000000
VERSION     DAXHPV010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 24735)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24735)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24735
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.011"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            141..1538
                     /gene="aspA"
                     /locus_tag="ACFM6C_000296"
     CDS             141..1538
                     /gene="aspA"
                     /locus_tag="ACFM6C_000296"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008797 - aspartate ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HFC6157812.1"
                     /translation="MTVRIEHDLLGDREIPAEVYWGIHTLRAIENFKISTQKISDVPQ
                     FVRSMVMVKKATAQANGELGAVKPEIAAAIEKACDEVLLNNRCLDQFPSDVYQGGAGT
                     SVNMNTNEVISNLALEALGYEKGRYDIVNPMDHVNASQSTNDAYPTGFRLAVYYSIGE
                     LLDKLAVLKNAFAAKAEEFKDVLKMGRTQLQDAVPMTTGQEFQSFQVLLEEEILNLDR
                     TRQLLLEVNLGATAIGTGVNTPKGYAELVVKKLSEVSGLPCKLTENLIEATSDCGAYV
                     MVHGALKRTAVKLSKICNDLRLLSSGPRAGLKEINLPELQAGSSIMPAKVNPVIPEVV
                     NQVCFKVIGNDTTITFAAEAGQLQLNVMEPVIAQCMFETISLLGNAAVNLAEKCVKGI
                     TVNREICERYVFNSIGLITYLNPYIGHHNGDLVGKICAQTGKGVREVVLERGLLSEEE
                     LNRILSPENLMNPHL"
     gene            complement(1735..2610)
                     /locus_tag="ACFM6C_000297"
     CDS             complement(1735..2610)
                     /locus_tag="ACFM6C_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA/RhaT family transporter"
                     /protein_id="HFC6157813.1"
                     /translation="MAYLLISIVFSVSVSILLKMARKKKIDIAQAVAVNYVVAVILTL
                     LVLKPDVGNIGAFLPTWWLFAALGVLLPSVFVIMGKSVESAGIVKSDAAQRLSLFLPI
                     VAALTLFGEKLSEGRLIGLCLAFAALFCLLWKHSGGKKSGSAWRQAVLLLGVWAGYGI
                     IDILFKQLAKSGTAFAGNLLVAFLLAGVLMFACLFAKSVRWRAESVVGGILLGGLNFM
                     NIVTYITAHQMMKDNPTLVFAGMNIGVIVLGTLSGALFFKEKINTINTAGIVLALCSI
                     ACLFYWAEVKALFGI"
     gene            complement(2612..3334)
                     /locus_tag="ACFM6C_000298"
     CDS             complement(2612..3334)
                     /locus_tag="ACFM6C_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HFC6157814.1"
                     /translation="MDKDLYAVLGVSPQAGADEIKRAYRKLAMKYHPDRNPGNPKAEE
                     KFKEIQRAYDTLSDLSKRMQYDASFRRHEERGRQEEAFRREQARREQFYREQMRREQA
                     FRQAFERQASRSCHTYEPSGGGSGCNYVLAAYILFGLGAIMLFMPIVGVIFAYMPIVG
                     VILAYMKRNSLDSIVYAAHTEYLIKTFWRTFWLYILGALTALLGIGVLIIIATNVWYF
                     YRIIAGFIRFNGGRAVAPEKWI"
     gene            complement(3357..3836)
                     /gene="ybaK"
                     /locus_tag="ACFM6C_000299"
     CDS             complement(3357..3836)
                     /gene="ybaK"
                     /locus_tag="ACFM6C_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro) deacylase"
                     /protein_id="HFC6157815.1"
                     /translation="MSKHTYPITPAVRVLRENGIEFEPFTYAYEEHGGTAQFARLFGK
                     DEHLVIKTIVLQDENGKGLIVLMHGDKQISTRNLARHLGAKHIEPATPVQANKWTGYL
                     VGGTTPFGIRTKLDIYVEQSVMDLETIYINGGKRGFIIGIRPGDLNILNPKTIQAAV"
     gene            3911..4273
                     /locus_tag="ACFM6C_000300"
     CDS             3911..4273
                     /locus_tag="ACFM6C_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HFC6157816.1"
                     /translation="MDIRYFGTTPRYSEAVGANGLIFLSGMVPENGETAAEQTADVLA
                     QIDRWLAECGSDKAHVLDAVIYLRDMGDYAEMNGVWDAWVAAGRTPARACVEARLARP
                     EWRVEIKITAVKKDAATA"
     gene            4308..5171
                     /locus_tag="ACFM6C_000301"
     CDS             4308..5171
                     /locus_tag="ACFM6C_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein YgfZ"
                     /protein_id="HFC6157817.1"
                     /translation="MKTLLPFFGVVRVSGEDRQTFLHGQLSNDINNLQTGQACYATYN
                     TPKGRVIANMIVVNRGGDLLLIMAQDLLEATVKRLRMFVLRAKAVFEILEDYAVDAEL
                     EASAEPLAAQEPSLVFTAECVSDGICTVVLPHRGILHIAPKNALPPYDAAAENAWRLH
                     EIRSGYPWICAATKETAVAQMLNQHIIGGVHFKKGCYPGQEIIARAQYRGQVKRGLAV
                     LSGNSAVEAGTLLTADGEETGIVLDSVQDSENFTALAVIKFSAAQKELTAPNGSIFKA
                     VHPFFKTENAE"
     gene            5269..6228
                     /gene="ttcA"
                     /locus_tag="ACFM6C_000302"
     CDS             5269..6228
                     /gene="ttcA"
                     /locus_tag="ACFM6C_000302"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HFC6157818.1"
                     /translation="MSKKTKQELENNKLSKRLRHAVGDAINDFNMIEPGDKIMVCLSG
                     GKDSYALLDILRQLQASAPIDFQLVAVNLDQKQPGFPEEVLPTYLESIGVPYKIVEED
                     TYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDDILATLFLNMFY
                     GGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPIIPCNLCGSQPNLQRQ
                     VIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFVGLERGQTLKHGGDLAFD
                     SEKMPERFSDGSEEDESEIKIAPQKAERKVINILANKPKTCGA"
     gene            complement(6362..6916)
                     /locus_tag="ACFM6C_000303"
     CDS             complement(6362..6916)
                     /locus_tag="ACFM6C_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFC6157819.1"
                     /translation="MKPKFKTVLTALLLAVSLPSMAATHVLMETDMGNIRLVLDESKA
                     PKTVANFVRYARKGFYDNTIFHRVIDGFVIQGGGFTEDLVQKASDKAVANESGNGLKN
                     TAGTVAMARTADPDSATSQFFINLADNDSLNYKNGQYGYTVFGRVESGMNTVSKIARV
                     KTATRGFYQNIPVQPVKIRRVVAE"
     gene            complement(6981..7898)
                     /locus_tag="ACFM6C_000304"
     CDS             complement(6981..7898)
                     /locus_tag="ACFM6C_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HFC6157820.1"
                     /translation="MKKTKVHLISGFLGTGKTTALKSLMAQKDPNEKWVIIVNEFGEI
                     GIDGAVLSDNGIPVAEIAGGCLCCTAGPQMGVTVQKMLRDAKPDRLMIEASGLAHAAS
                     VIDELKAKPLDSLLEIGAVFTVVDPRQFINPDYAQQALYKDQIGICDVLVASKTDLCT
                     TEQLAEFHDKAAKLFPPKAKVVEVQNAQLDIRWLDIPVIEKSRYRLKALPDNTMGFQS
                     QGFTFPAGRDFDGEKLTNFFNDLPKMTEGLVRAKGVFQVLGTWVWLNWVDGQWGANQV
                     SWRRDSRFELIAKSFDADLIEQKLKDALE"
     gene            complement(7959..8084)
                     /locus_tag="ACFM6C_000305"
     CDS             complement(7959..8084)
                     /locus_tag="ACFM6C_000305"
                     /inference="COORDINATES: protein motif:HMM:NF014043.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157821.1"
                     /translation="MNLSVVWETVLNVIPAMSADISNLLEQLSIDEEHDNSCHHF"
     gene            complement(8081..8353)
                     /locus_tag="ACFM6C_000306"
     CDS             complement(8081..8353)
                     /locus_tag="ACFM6C_000306"
                     /inference="COORDINATES: protein motif:HMM:NF014043.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF86 domain-containing protein"
                     /protein_id="HFC6157822.1"
                     /translation="MKMQKELSVYLKQILQAAQYIRLYTDKMDYGQFSADTKTVQAVV
                     FNLFLIGENATHILKSYPEFAEETKYLNWIGMRGYCAIGLPMATLK"
     gene            complement(8350..8643)
                     /locus_tag="ACFM6C_000307"
     CDS             complement(8350..8643)
                     /locus_tag="ACFM6C_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HFC6157823.1"
                     /translation="MKPSLLLQSRKKEILAVFGKYPLICNPRVFGSVSRGDDTENSDI
                     DLLVDAKTGTTLLDLGGLQEELQKLLGIKVDLLTPDDISAHFRDKVLTEAVAL"
     gene            complement(8688..9164)
                     /locus_tag="ACFM6C_000308"
     CDS             complement(8688..9164)
                     /locus_tag="ACFM6C_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HFC6157824.1"
                     /translation="MKTNFKQKIIGQARSEGLQVTALREQVLDIVLQQSGVIKAYNVL
                     SQMQQQSEGVLAPPTAYRALDFWAEQGVLHKVAAVNGYILCSHAQHECDDHCHDHEEA
                     EAHHSAFILVCTECGTADEQTLSHEWAALRAGVAESGFALKEEHVVLTGICKKCQQ"
     gene            complement(9235..9690)
                     /locus_tag="ACFM6C_000309"
     CDS             complement(9235..9690)
                     /locus_tag="ACFM6C_000309"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase"
                     /protein_id="HFC6157825.1"
                     /translation="MKKPKILFVCLGNICRSPMAEYILRRRAAEAGIPLEADSAGTSG
                     WHDGEDMHRETAKILKKYGIDASGFTSRKIRQSDAAAFDCIIAMDGKNLSELERTFGR
                     RPEKIFKLTDLIPESGYDHVPDPWYTGDFEETFRLADAGCRALLEKISK"
     gene            complement(9815..10930)
                     /locus_tag="ACFM6C_000310"
     CDS             complement(9815..10930)
                     /locus_tag="ACFM6C_000310"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008887 - glycerate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0031388 - organic acid phosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HFC6157826.1"
                     /translation="MKIVIAPDSFKESLTAQQVAEAIKRGFQQSIADVECLLCPVGDG
                     GEGTVDAIRHSLDLEEKCLQVTGPFGQKEVMRYFQKEQLALFEVADLVGLGKIPLEKR
                     NPLQIQTRGIGELIRHLISQEIKEIYIGVGGTASNDGGIGIAAGLGYQFYDEDGNTLP
                     VCGQSLLNLASVSTENRYEIPEDVHIRILADVVSPLCGHQGATYTFGKQKGLDSTMFE
                     AVDQAIQDFYEKVSPATLKLKGAGAGGGIAGGLCAFAQASIVSGIDTCLDLIDFDKKV
                     SDVDLVIVGEGRLDRQSLAGKAPIGVAKRTPVGVPVVAICGSLVEDLPSLPFENIQAA
                     FSILEKSEPLEDSLKNASLYLEHTASNIGHLLNMPKI"
     gene            complement(11044..12141)
                     /locus_tag="ACFM6C_000311"
     CDS             complement(11044..12141)
                     /locus_tag="ACFM6C_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HFC6157827.1"
                     /translation="MNQTFTLPDTRPYPQNQIKNHLLLNAYQLAHNSSQASRKLSFGQ
                     LQTEIRGMLEQNHYINLSLALTMSPDAGTYAALLSSVNAVLDCEKEGEVQWFALPVVL
                     VSGCKKERAIEMKLPTEALFACLKNYPHLRALTQETQWLPYLVHSSDLSAVAPDEWWR
                     AKQNTEAAAQHLRRFAPRPLLLPEGQSVHVVYALGFGSGKVQTALGQNLLQAGLPLMQ
                     VWQENLASEGVTLFANPLSPDSPVRALSDGSHTRQRMAMDVFAANAIRAVRMQSPRVG
                     VVAAAKAGGQVLFGFNATDGAFEVVPQVFSWQLSFTDNIAVIQQNFLDLMAECRVEHV
                     YLLHNPLGEQESIPSYAEALKREGHNPFFSA"
     gene            complement(12223..13806)
                     /locus_tag="ACFM6C_000312"
     CDS             complement(12223..13806)
                     /locus_tag="ACFM6C_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase regulatory domain-containing
                     protein"
                     /protein_id="HFC6157828.1"
                     /translation="MPNKKKKAAFARAATENGVPDVSNIKNSYDDLMYESKAFSQTAI
                     NALEARARMMGLKPAAAAKAKVLELGCSMGGNIITQALYYPDAEFVGIDLSGRQVAQG
                     NAIIEKMGLKNVRLEEKDILTIDESFGKFDYIIVHGIWSWVPDAVKDKIFSICRNNLT
                     EHGIAYISYNVYPGWKRQEQLREIMYFAGRDVLEEPLEARTRKGLDALKALAEILEND
                     KGLDGGGKLPAIQKILNHNFYYIAHEYMEALNDPIYVNGFIEWANRHRLAYIGDTDLH
                     ASFVSWMAEHTRERILALAGGDYIAKEFYSDILSDRQFRRSLLCREEVGDNIRRDESV
                     AVEVIESLNFRPARGETINFDENDTLLSGIRDVMKTGEAFKTEDVAENLARRFPGLEF
                     DRMKINSQLLLQTILGRFSVSSDNAGKPFFEDHKTYVPARFTDYAAAFVEHGAEAFVR
                     PANRYNESTPSFGYGHLYIMRQLSRPTSKQAVIDAVAENLNIVSTTPDGLTFHPPAEV
                     YVEEILADLADRHFLVSAD"
     gene            complement(13954..14166)
                     /locus_tag="ACFM6C_000313"
     CDS             complement(13954..14166)
                     /locus_tag="ACFM6C_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HFC6157829.1"
                     /translation="METLILDIGGMSCGGCVKSVTRILEGVKGVASVEVSLENKSATV
                     GYDPAQTDAGALIEAVEDGGYDAALK"
     gene            14512..14667
                     /locus_tag="ACFM6C_000314"
                     /pseudo
     CDS             14512..14667
                     /locus_tag="ACFM6C_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713084.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transporter"
     gene            14797..16233
                     /locus_tag="ACFM6C_000315"
     CDS             14797..16233
                     /locus_tag="ACFM6C_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HFC6157830.1"
                     /translation="MPLLSVEFALFFLAFLPIYWGLAKYPSAQNLLLLAAGMGWLYHI
                     GPVFAAIIVLYSSCVYLLGELLRSDRENTRRFWLGCGIAASLTVLGFFKYFDFFRPLI
                     AQYAGQGGAIDILMPLGLSYYTFQSLAYLVYCFRAPHAARFEWHELLLHLSFFPTVTS
                     GPIIRAAAFKSADGEQAGALAQIRTRQPRSPVRPALAVSLILLGIAKKWWLAGMLAEN
                     WVSPVFENPAQFDGWGVLGGVYGYTFQLFLDFSGYSDLVIGMAMLLGFRLPKNFSAPL
                     RALNIRAFWDKWHISLSTWIRDYIYIPLGGSKKGFLRTQLNLMAAMVLSGIWHGYGWN
                     FLIWGALHGTALVLLNTGDRYFGRNALCRLKYLAPLSWFVTFHFVCLSFVVFNTASPD
                     DAGAVFNALFANASGWNAPQQADMLLLASFAAVMLLYPYLQRAFDGVVKGLEKIPMWL
                     WFIPVSAVLLLIIVLAPSGIPGFIYANF"
     gene            16244..17227
                     /gene="patB"
                     /locus_tag="ACFM6C_000316"
     CDS             16244..17227
                     /gene="patB"
                     /locus_tag="ACFM6C_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan O-acetyltransferase PatB"
                     /protein_id="HFC6157831.1"
                     /translation="MKNFLSLFASILMSALIAVWFSQNPINAYWQQTYHRNSPLEPLA
                     AYGWWRSGVALQENAYALSDGIKAFLSGETPPTAQDGGSADMPSEAAASEAVPQTGET
                     EWKQDTEAAAVRSGDKVFFAGDSLMQGVAPFVQKSLKQQYGIESVNLSKQSTGLSYPS
                     FFDWPKTIEETLKKHPEISVLAVFLGPNDPWDFPVGKRYLKFASDEWAQEYLKRVDRI
                     LEAAHTHRVQVVWLGIPYMKKAKLDGQMRYLDKLLSEHLEGKIILIPTAHTLSGGEDR
                     YTDSVNVNGKPVRYRSKDGIHFTAEGQKLLAAKIMEKIVFEPSTQPSSTQP"
     gene            17224..18417
                     /locus_tag="ACFM6C_000317"
     CDS             17224..18417
                     /locus_tag="ACFM6C_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HFC6157832.1"
                     /translation="MNPKHLIAFSALFAATQAEALPVASVSLDTVTVSPSAPYTDTNG
                     LLTDYGNAAASPWMKKIRSVAQGSGETFRILQIGDSHTAGDFFTDSLRKRLQKTWGDG
                     GIGWVYPANVKGQRMAAVRYNGNWQSLTSRNNTGDFPLGGILAHTGSGGSMTLTASDG
                     KTGKQRISLFAKPLLAEQTLTVNGNTVSANGGGWQVLDTRAALPLTIQTEMPWDIGFI
                     NIENPAGGITVSAMGINGAQLTHWSKWRADRMNDLAQTGADLVILSYGTNEAFGDNID
                     IADTEQKWLDTVRQIRDSLPAAGILIIGAPESLKNTLGVCGTRPVRLTEVQQMQRRIA
                     RQGQTMFWSWQNAMGGICSMKNWLNQGWAAKDGVHFSAKGYRRAAEMLADSLEELVRA
                     AAIRQ"
     gene            complement(18477..18653)
                     /locus_tag="ACFM6C_000318"
     CDS             complement(18477..18653)
                     /locus_tag="ACFM6C_000318"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157833.1"
                     /translation="MPSENGRRQFIIFAFRRHIKRRLCAVCRRFAPVLPMLEANAGCV
                     RQTVRGVAMPSEAI"
     gene            18704..20257
                     /locus_tag="ACFM6C_000319"
     CDS             18704..20257
                     /locus_tag="ACFM6C_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid--CoA ligase"
                     /protein_id="HFC6157834.1"
                     /translation="MNRTYANFYGMLAAACRKNGNGTAVFDGKEKTAYRALKQEAEAV
                     AAYLQNIGVKFGDTVALAVSNSTEFITAYFAVSAIGAVAVPMNTFLKNSEYAYILNDC
                     KARFLFASAGLSKELAGLKAQTPVEKIIWTGQSRPDGEMAEGDAFFEDVRRFPEKPDL
                     GRQPRINDLAHIIYTSGTTGHPKGALISYANLFANLNGIERIFKISKRDRFIVFLPMF
                     HSFTLTAMVLLPIYMACSIILVKSVFPFSNVLKQTLLKRATVFLGVPAIYTAMSKAKI
                     PWYFRWFNRIRLFISGGAPLAEQTILDFKAKFPRAKLLEGYGLSEASPVVAVNTPERQ
                     KARSVGIPLPGLEAKAVDEELVEVPRGEVGELIVRGGSVMRGYLNMPAATDETIVNGW
                     LKTGDFVTIDEDGFIFIVDRKKDLIISKGQNVYPREIEEEIYKLDAVEAAAVIGVKDR
                     YADEEIVAFVQLKEGMDLGENEIRRHLRTVLANFKIPKQIHFKDGLPRNATGKVLKRV
                     LKEQFDGNK"
     gene            complement(20348..22375)
                     /locus_tag="ACFM6C_000320"
     CDS             complement(20348..22375)
                     /locus_tag="ACFM6C_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HFC6157835.1"
                     /translation="MSLSEFIERRTSFNPMVILTTLFFVCVLVVLVLTVPDQVQMWLD
                     RAKEVIFTEFGWFYVLTFSIFLGFLLILSVSSLGNIRLGRDEDVPEFGFLSWLAMLFA
                     AGMGVGLMFFGVAEPLMHYFSDITAGTPEHRQQQALLHTVFHWGVHAWSVYGTIALAL
                     AYFGFRYKLPLALRSCFYPLLKEKISGRFGDAIDIMALLATFFGIITTLGFGASQLGA
                     GLQEMGWIAENSFSVQVLIIAAVMSLAVVSAISGVGKGVKVLSELNLSLAFLLLFFVL
                     AAGPTVYLLSAFGDNIGNYLGNLVRLSFKTYAYEREHKPWFESWTVLYWAWWCSWAPF
                     VGLFIARISKGRTIREFVFGVLLIPGLFGVLWFTVFGNTAIWLNDGVAGGMLEKMTSS
                     PETLLFKFFNYLPLPELTSIVSLLVISLFFVTSADSGIYVLNNITSRDKGLSAPRWQA
                     VMWGVLMSAVAVLLMRSGGLGNLQSMTLIVSLPFALLMLIMCFSLWKGLSADKKYFET
                     RVNPTSVFWTGGKWKERLVQIMSQTQEQDILKFLKHTASPAMHELQRELSEEYGLSVR
                     VDKMFHQDEPAIEFVIRKETMRDFMYGIKSVGQDVSDQLINDGKLPHIRHQTTYKPYA
                     YFFDGRVGYDVQYMNKDELIADILKNYERYLMLLDDVGQELMAHEQVELAE"
     gene            22664..24670
                     /locus_tag="ACFM6C_000321"
     CDS             22664..24670
                     /locus_tag="ACFM6C_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific recombinase"
                     /protein_id="HFC6157836.1"
                     /translation="MADMKKITPQNLRPLLSESLGHTDFVNVLNALIKFLRRGGKKCA
                     GERFDLIIDTFKQDRELLSRFSRCFYIWLAQIHIYPALIKLGIFSRHSFAREMGIRIY
                     ERFSPSYKDFANLGEVFLYLFHSENDDKWLQTLNIRQWLVLYELIRSHAEPSKLQTAG
                     IRLADARLRAIEMLSVWTASEAIEPDLIRIAPRLLEADSSFVALQRETAKLVEHYRNG
                     TTPYDTAHLEVMFDQCFSQIDYLRRKGTGAGSGSSVKVAHLLERLRQTVDRLKLLTDI
                     QTGAGNSNRLTIALMNSLIYAAVEQYSTRHLRRSSIRMLARSITENKSHHGEHYITRN
                     RKEYFKMFYSAAGGGIIIALMALLKIRIGTLGLSPFLTSLSAGFNYGIGFMIIHMLHC
                     TVATKQPAMTAASFAEQVDLNEGGKAVDNKLAKLLIDVCRSQSVAVFGNVSIAILLAC
                     AISFGYAHLHQQPILDAHTAAYQFKSIDIIAYPTLWYAAIAGLWLFCSGIIAGFFDNR
                     ADYLNLRQRLPFNPLLRKIMRPGPRRVLAAYIHKHYGSLAGNFIFGMLLGMTGYFGHL
                     LGLPLDIRHVAFSSANLGYAAVSGNVGLGTFVLGIFSVLAIGLVNLCVSFSLALFVAL
                     RSRGTKIGSIRNLIKSFWNQIKSNPCILFLPPAKEQGHPPSDKP"
BASE COUNT         5978 a         7177 c         5939 g         5641 t
ORIGIN      
        1 ccgaaaacaa cgtttcccgt tttcagacgg catacgatat ggacaatttc atccggccgg
       61 tatagtgttc gtcctgcggc ggcatctttc cgatggcgca ttttttcaat attaattatc
      121 cgacttacaa aggtaaaaac atgactgtcc gtatcgaaca cgatttattg ggcgaccgcg
      181 agattcccgc cgaagtgtat tggggcatcc acactctgcg cgccattgaa aactttaaaa
      241 tctccacaca aaaaatttcc gacgtgccgc agtttgtccg cagtatggtg atggtgaaaa
      301 aagcaaccgc gcaggcaaac ggcgaattgg gtgcagtaaa acccgaaatc gccgccgcca
      361 ttgaaaaggc ttgcgacgaa gttctgctga acaaccgctg cctcgaccaa ttcccctccg
      421 acgtgtatca gggcggtgcg ggaacttcgg tcaatatgaa caccaacgaa gtcatctcca
      481 acctcgcatt ggaagccttg ggatacgaaa aaggccgcta cgacatcgtc aatccgatgg
      541 accatgtcaa cgccagccaa tcgaccaacg atgcctatcc cacgggcttc cgccttgccg
      601 tgtattacag catcggcgaa ttgctcgaca aactggccgt cctgaaaaac gcctttgccg
      661 ccaaagccga agagtttaaa gacgttttga aaatgggccg cacccagctt caagatgccg
      721 taccgatgac tacaggacaa gaattccaat ctttccaagt gttgttggaa gaagaaatcc
      781 tcaacctcga ccgcacgcgc caactgctgt tggaagtcaa tttgggcgca acggcaatcg
      841 gcacgggcgt gaacacgccc aaaggctacg ccgaactggt ggtcaaaaaa ctctccgaag
      901 tcagcggctt gccttgcaaa ctgaccgaaa acctgattga ggcgacctcc gactgcggcg
      961 catatgtgat ggtacacggc gcattgaagc gcacggcggt caaactctcc aaaatctgca
     1021 acgacttgcg cctgctctct tccggcccgc gtgccggctt gaaagaaatc aacctgcccg
     1081 aattacaggc cggttcttcc attatgcctg ccaaagtcaa tcccgtgatt cccgaagtgg
     1141 tcaaccaagt ctgcttcaaa gtcatcggca acgacaccac catcactttc gccgccgaag
     1201 caggtcagtt gcaattaaac gtaatggagc cggtcatcgc ccaatgtatg tttgaaacga
     1261 tttccctctt gggcaatgct gcggtcaacc tcgccgaaaa atgcgtcaaa ggcattacgg
     1321 tcaaccgcga aatctgcgag cgttacgttt tcaactccat cggtttgatc acttatctga
     1381 atccgtacat cggccaccac aacggcgact tggtcggcaa aatctgcgcc cagaccggca
     1441 aaggcgtacg cgaggttgtt ttggaacgcg gcctgttgag cgaagaagaa ctcaaccgca
     1501 tcctctctcc tgaaaacctg atgaaccccc atctgtaacg ttgcaggcaa atgccgtctg
     1561 aagcagggat gctgcttcag acggcatttt cggcattcaa ggctgtttta gccgccgccc
     1621 gattccggcg gtttgtcgga aaaagccagt tatttccgtt cgggaaaaat ccagtttatt
     1681 gacaaaaaaa caattactta aaacgcgttt gcgcggtatg cggacacggc gggattatat
     1741 gccgaacagt gccttgacct ccgcccaata aaacaggcag gcgatggaac acagtgccaa
     1801 tacgattccc gccgtattga ttgtgttgat tttttcctta aaaaacagtg cgcccgaaag
     1861 cgtacccaaa acaatcacac cgatattcat accggcaaaa accaaggtcg gattgtcctt
     1921 catcatttgg tgcgcggtga tgtaggttac gatattcata aaattcaaac cgcccaagag
     1981 tatgccgccg accacactct ctgcgcgcca tctgaccgat ttggcaaaca ggcaggcaaa
     2041 catcagcaca cccgccagca aaaatgcaac cagcaggttg cccgcaaatg ccgttccgct
     2101 tttggcaagc tgtttgaaca ggatatcgat aatgccgtaa cctgcccaca cgcccagcag
     2161 caataccgcc tgccgccacg cgcttcctga ttttttgcca ccgctgtgtt tccaaagcag
     2221 gcagaacagt gcggcaaatg cgaggcacag cccgattagt ctgccttcgc tgagtttttc
     2281 gccaaacagc gtcaaggcgg caacaatcgg caaaaacagc gacaaacgct gcgccgcgtc
     2341 ggatttgacg ataccggcgg attctacgga tttgcccata atgacaaata cggacggcag
     2401 cagcacgccc aatgcggcaa acagccacca tgtcggcaaa aatgcgccga tattgccgac
     2461 atccggcttc aataccagca gggtcagtat gaccgcgacc acataattga cggcgaccgc
     2521 ctgcgcgatg tcgatttttt tcttccttgc cattttcagc aaaatggaaa ccgacacgct
     2581 gaacacgatg ctgattaaca ggtaagccat actatatcca tttctcgggt gcaaccgccc
     2641 tgccgccgtt gaagcggata aagccggcga tgatgcggta gaaataccag acgttcgttg
     2701 caataataat cagcacgccg atacccaaaa gggcagtcag cgcacccaaa atataaagcc
     2761 aaaatgtgcg ccaaaaggtt ttaatcaggt attcggtatg tgcggcatag acaatgctgt
     2821 ccaaactgtt ccgtttcata taggcgagaa tcacgccgac tatgggcata taggcgaaaa
     2881 tcacgccgac tatgggcatg aacagcatga ttgcacccaa accgaacagg atgtaggcgg
     2941 cgaggacata gttgcacccg cttccgccgc cggacggttc gtaagtatgg cacgaacgtg
     3001 atgcctgccg ttcaaacgcc tgtctgaacg cctgttcgcg gcgcatctgt tcgcggtaaa
     3061 actgctccct gcgcgcctgt tcccggcgga atgcctcttc ctgccgcccg cgttcctcat
     3121 gccgtctgaa ggacgcgtcg tattgcatcc gtttcgacag gtcggaaagc gtatcgtaag
     3181 cccgttggat ttctttgaac ttttcttccg ccttcggatt gcccggattg cggtcgggat
     3241 gatatttcat cgccagcttg cggtaggcgc gtttgatttc gtccgctccc gcctgcggcg
     3301 acacgcccaa tacggcatac aaatctttgt ccatattgtt cctttatact ttcccgtcaa
     3361 accgccgcct gtattgtttt cgggttcaaa atatttaaat ctccgggacg gatgccgata
     3421 atgaacccgc gttttccgcc gttgatatag atggtttcca aatccatcac cgactgttcg
     3481 acgtaaatat ccaactttgt ccggatgccg aacggcgttg tgccgccgac cagatagccc
     3541 gtccacttgt ttgcctgtac gggcgtggcg ggttcgatgt gtttcgcacc caaatgccgc
     3601 gccagattgc gggttgaaat ctgcttgtcg ccgtgcatca agacaatcag ccccttaccg
     3661 ttttcatctt gcaaaacaat ggttttaatg accaagtgtt cgtctttgcc gaatagtcgg
     3721 gcaaactgcg ccgtgccgcc gtgttcctca taggcatagg taaaaggttc aaattcgatg
     3781 ccgttttcac gcaaaacgcg cacggcaggt gttatcggat aagtgtgttt actcattttt
     3841 cgtcatgcaa aacatggaaa tcggtcaagc gcaatgttac catatatccc ctttatcgaa
     3901 ggaaaccgat atggatatcc gatatttcgg cacaacgccc cgctattccg aagccgtcgg
     3961 cgcaaacggc ttgattttcc tctccggcat ggttcccgaa aacggtgaaa cggctgccga
     4021 acagactgcc gacgtgcttg cccaaatcga ccgctggctg gcggaatgcg gctcggacaa
     4081 agcgcacgtt ttggatgcgg tcatctatct gcgcgatatg ggcgactatg cggaaatgaa
     4141 cggcgtgtgg gacgcttggg ttgccgccgg cagaacgccc gcccgcgcct gcgtggaagc
     4201 gcggctcgcc cgtccggagt ggcgcgtcga aatcaaaata accgccgtga agaaagatgc
     4261 ggcaaccgca taaacagatt tcctttatat ttcagagtac gcaaatgatg aaaaccttac
     4321 tgcccttttt cggcgtggta cgcgtcagcg gcgaagaccg ccaaaccttc ctgcacggac
     4381 agctttccaa cgacatcaat aatcttcaga ccgggcaggc gtgttatgcg acttacaaca
     4441 cgcccaaagg ccgtgtcatc gccaatatga ttgtcgtcaa ccgaggcggc gatttgctgc
     4501 tgattatggc gcaagacttg cttgaagcaa cggtcaaacg tttgcggatg tttgtgttgc
     4561 gtgccaaagc cgtttttgaa atccttgaag attacgccgt cgacgcggaa ttggaagcat
     4621 ccgccgaacc gcttgccgcg caagaaccca gtctcgtctt taccgccgaa tgcgtttcag
     4681 acggcatctg caccgtcgtc ctgccccatc ggggcatttt gcacatcgcc cccaaaaacg
     4741 ccttgccgcc ttatgatgcc gccgccgaaa acgcgtggcg gctgcacgaa atccgcagcg
     4801 gttacccgtg gatatgcgcg gctaccaaag aaaccgccgt cgcccaaatg ctcaaccagc
     4861 acatcatcgg cggcgtacac ttcaaaaaag gctgctatcc gggacaggaa atcattgccc
     4921 gtgcccagta tcgggggcag gtcaaacgcg gcttggcggt attgtcggga aattcggccg
     4981 tcgaagcagg aaccctgctg acggcagacg gcgaagagac cggcatcgta ctcgacagcg
     5041 ttcaagattc ggaaaacttt accgcccttg ccgtgattaa attctccgcc gcgcaaaaag
     5101 aactgaccgc cccaaacggc agtatcttca aagcggttca tcccttcttt aaaaccgaaa
     5161 atgcagaata atccctctaa tgccgtctga acctttttca gacggcattt taaaaccgcc
     5221 cctgttttcg gttacaatgc cgcatcccca atttttcaaa ccaccgccat gtccaaaaaa
     5281 accaaacaag aactggaaaa caacaaactc agcaaacgcc tgcgccacgc cgtcggcgac
     5341 gcgattaacg atttcaacat gatcgagccg ggcgacaaaa tcatggtctg cctctccggc
     5401 ggaaaagaca gctatgccct cttggacatc ctgcgccagc tccaagccag cgcgccgatt
     5461 gatttccaac tggttgccgt caatctcgac caaaagcagc cgggcttccc cgaagaagta
     5521 ttaccgacct atctcgaaag catcggcgtt ccctacaaaa ttgttgaaga agacacctac
     5581 tccaccgtca aacgcgtatt agacgaaggc aaaacgactt gttcgctgtg cagccgcctg
     5641 cgccgcggca tcctctaccg cactgcaaaa gaattgggct gcaccaaaat cgccttggga
     5701 caccaccgcg acgacatcct cgccaccttg tttttaaata tgttttacgg cggcaaactc
     5761 aaagccatgc cgcccaagct ggtgagcgac aacggcgaac acatcgtcat ccgtccgctg
     5821 gcgtatgtaa aagaaaaaga cttaatcaaa tacgccgaat taaaacaatt ccccatcatc
     5881 ccgtgcaacc tctgcggctc gcaacccaac ctgcaacgcc aagtcatcgg cgatatgctg
     5941 cgcgattggg acaaacgctt ccccggccgc atcgaatcga tgttctccgc cctgcaaaac
     6001 gtcgtccctt cccaccttgc cgataccgaa ctcttcgact ttgtcggatt ggaacgcggt
     6061 caaaccctga aacacggcgg cgatttggcg tttgacagcg aaaaaatgcc cgaacgtttt
     6121 tcagacggca gcgaagaaga cgaaagcgaa atcaaaatcg cgccgcaaaa agccgaacgc
     6181 aaagtcatca acattctggc gaacaagccg aaaacctgcg gcgcgtaacc ccccgccgtc
     6241 aaaaatgccg tctgaagccc gtttggcgtt tcagacggta ttttaaaatc ccgaagtaga
     6301 cacttttcaa ccccaaacgc ctgctttttc cgtttcagct ttctgaaggt ttcccgttat
     6361 attactcggc aacaacgcgg cgaattttga cgggctgtac gggtatgttt tgataaaagc
     6421 cgcgcgtggc ggttttgacg cgggcgattt tggaaacggt gttcatgccg ctttcgaccc
     6481 tgccgaaaac ggtatagccg tattgtccgt ttttgtagtt gagtgaatca ttgtccgcca
     6541 gattgataaa gaattggctg gtggcggaat ccggatcggc cgtccgcgcc atggcgacgg
     6601 taccggcggt gtttttcaag ccgttgccgg attcgttggc aacggcctta tcgcttgcct
     6661 tttgtaccaa gtcttcggta aatccgccac cctggataac gaagccgtcg ataacgcggt
     6721 ggaaaatcgt attgtcgtaa aagccttttc gggcatagcg cacgaaatta gcaacggttt
     6781 tgggggcttt ggactcgtcc aaaaccaaac ggatattgcc catatcggtt tccatcaaaa
     6841 catgggttgc cgccatagac ggcagggaaa ccgccaaaag cagcgcggtt aaaacggttt
     6901 tgaatttggg tttcatcccg tcctcctaaa gccttcagac ggcattttca tttcatatgc
     6961 cgtctgaaag cgcgtgaacg ctattccaat gcgtctttga gcttttgttc gattaaatcc
     7021 gcatcaaacg atttggcaat caattcaaaa cgcgaatcgc gccgccatga gacttggttc
     7081 gcgccccact gtccgtctac ccagttgagc cacacccacg ttcccaatac ttgaaacacg
     7141 cctttggcgc ggacgagtcc ttcggtcatt ttgggcaggt cgttgaaaaa gttggtcagc
     7201 ttttcgccgt cgaaatcgcg tccggcgggg aatgtgaaac cttgcgactg gaagcccatg
     7261 gtgttgtccg gcagggcttt gaggcggtag cgtgattttt cgatgacggg aatatcgagc
     7321 caccggatgt cgagttgtgc gttttggact tcgaccactt tggctttggg cgggaacagt
     7381 tttgccgctt tgtcgtgaaa ttcggcaagc tgttcggtgg tgcataaatc ggttttgctg
     7441 gcgaccaata cgtcgcagat gccgatttgg tctttataca acgcctgttg cgcgtaatcg
     7501 gggttgatga actggcgcgg atcgacaacg gtaaagacgg caccgatttc caaaaggctg
     7561 tccagcggtt tggctttgag ttcgtcgatg acgctggctg cgtgcgccag tccgcttgcc
     7621 tcaatcatca ggcggtcggg cttggcatcg cgcagcattt tctgcacggt tacgcccatt
     7681 tgcgggccgg cggtgcaaca caaacagccg ccggcgattt ctgccacagg gatgccgttg
     7741 tcgctcaata ccgcgccgtc aatgccgatt tcgccgaact cgttgacgat gatgacccat
     7801 ttttcgttcg ggtctttttg cgccatcagg cttttgagcg cagtggtttt gcctgttccc
     7861 aaaaaacctg aaatcaggtg gactttggtt tttttcattt ctatgtgatg tcccacttta
     7921 aaatttgaag atagggtgtt ttaaatgatt aaataatgtt aaaagtgatg gcagctgtta
     7981 tcatgttctt catcaattga caattgttcc agcaaattcg atatatcggc tgacatcgcc
     8041 ggtatgacgt tcaaaaccgt ctcccaaacg acagacaggt tcatttcaaa gtagccatgg
     8101 gcaatcctat tgcgcaatac cccctcatcc ctatccaatt caaatatttg gtttcctcgg
     8161 caaattccgg atacgattta aggatatggg ttgcgttttc accgataagg aacaaattaa
     8221 aaacgactgc ctgcacagtc tttgtgtcgg cagaaaattg cccataatcc attttgtcgg
     8281 tatatagccg gatatattgc gctgcctgca atatctgttt caaatagacc gacaattctt
     8341 tctgcatttt cataatgcga cagcctcagt caacacctta tctctaaagt gggccgagat
     8401 gtcatcgggt gtcagcaaat cgacctttat gcccaagagt ttctgcaatt cctcttgcag
     8461 cccgcccaaa tccaataatg ttgtccctgt ttttgcatcc accaacaaat caatgtcgct
     8521 gttttccgta tcatctccgc gagaaaccga accgaatacc cttggattgc aaatcaatgg
     8581 atatttcccg aaaactgcca atatttcttt ctttctgctt tgcaacaaaa gagacggttt
     8641 cattatctgc tcctttcgaa aggcttatta tcaatgcaaa ccaccgatta ctgctgacat
     8701 tttttacaaa tcccggttaa aacaacgtgt tcttctttca gcgcaaagcc gctttcggca
     8761 acgcctgcgc gcagtgccgc ccactcgtgg ctgagggttt gctcgtccgc cgtgccgcat
     8821 tcggtgcaga ccaaaataaa cgcgctgtgg tgcgcttcgg cttcttcgtg gtcgtggcaa
     8881 tggtcgtcgc actcgtgctg cgcgtggctg cacaaaatat agccgttgac cgccgccact
     8941 ttgtgcaaaa cgccctgctc cgcccaaaaa tcaagggcgc ggtaggcggt aggcggtgca
     9001 agcacgccct cgctttgctg ctgcatctgc gacaagacgt tgtaggcttt aatcacgccg
     9061 ctttgctgca agacaatatc taatacctgc tcgcgcaaag cggttacctg caagccttcg
     9121 ctgcgtgcct gtccgataat tttctgtttg aaatttgttt tcataaattc tctgtttatg
     9181 ccgtctgaac aaccgatacg gcaggaggcg gttttatatt tgtattcaat tgctttattt
     9241 ggaaatcttt tccaacaatg cccgacagcc cgcatccgca agcctgaagg tttcttcaaa
     9301 atcgcccgta taccacggat cggggacatg gtcgtaaccg ctttcgggta tcaggtcggt
     9361 cagcttgaat attttttccg gccgcctgcc gaaggttctt tccaattcgg acaaattctt
     9421 gccgtccatc gcgatgatgc agtcaaacgc cgccgcatcg ctttggcgga ttttgcggct
     9481 ggtaaagcct gaagcatcga taccgtattt tttcaatatc tttgccgtct cgcggtgcat
     9541 atcttcgccg tcgtgccagc ccgatgtccc cgcgctgtcc gcttcaaggg gaatgcccgc
     9601 ttcggcggcg cggcggcgca aaatgtattc cgccatcggc gaacggcaga tgttgccgag
     9661 gcagacaaaa aggattttcg gttttttcat atcccctccc tgttccggcg cgatgccgtc
     9721 tgaagcggaa accctttcag acggcatcgg tcggttaatc gtaaccgcat aaggcagaac
     9781 cagccaaaac atccatctgg aagaaatggt ttggctaaat cttaggcata tttaataagt
     9841 gtccaatatt agaagccgta tgctccaaat agagactggc atttttcaaa ctatcttcta
     9901 aaggttcact tttctccaaa atagaaaagg cagcttggat attttcaaat ggcagggaag
     9961 gcaaatcttc aacgagactg ccacaaatag cgacaacagg aactccgaca ggggttcttt
    10021 ttgctacacc aataggcgct ttccctgcta aactttgacg atctagtctt ccttcaccaa
    10081 cgataaccaa gtcaacatct gacactttct tatcaaagtc aatcaagtcc aggcaggtgt
    10141 caattccaga tacgatactt gcctgagcaa aggcgcacaa accaccagcg atgcctccac
    10201 cagctcctgc tcctttaagt tttaatgttg caggggagac tttttcataa aaatcttgta
    10261 ttgcctgatc tacggcctca aacatagtag aatccaaccc tttttgcttg ccaaacgtat
    10321 aggtcgcacc ttggtgtcca cataagggac tcacaacatc tgctaaaata cgaatgtgaa
    10381 catcttcagg aatttcatag cgattttctg ttgaaacaga agctaggttt agtaaggatt
    10441 gaccgcaaac gggtaaggta tttccatcct catcataaaa ttgataacct aaaccagcag
    10501 caatcccaat acctccatca ttactggccg taccgccaac gccaatatag atttctttaa
    10561 tttcttgact aatgaggtgg cgaatcaatt ctccaatacc acgagtttgg atttgtaatg
    10621 gatttcgttt ctctagcggg atttttccaa gaccaaccaa atcagcaact tcgaataggg
    10681 ctagttgttc tttttgaaaa tagcgcatga cttctttttg tccaaaaggt cctgtcactt
    10741 gaagacattt ttcttctagg tcaagagaat gtcggatagc atctacagtg ccttctcccc
    10801 catcaccgac aggacagagg agacattcca catctgctat cgattgttgg aagcctcttt
    10861 ttattgcttc agctacctgt tgagctgtca agctttcctt aaacgaatcc ggtgcaatta
    10921 caatcttcat atttataatt catcctttcg tttcactcaa ggcacaacac agaatgaaaa
    10981 agtgttgtgc tctttatttt gatttattat ataaatgaga aagcctatca ctactacaaa
    11041 tcactatgcg ctgaaaaacg gattgtgccc ttcccgtttc aatgcttccg catagctcgg
    11101 gatgctttcc tgttcgccca agggattgtg caacaggtaa acgtgttcca cgcggcactc
    11161 cgccatcagg tcgaggaaat tttgctggat gacggcgatg ttgtcggtaa aggaaagctg
    11221 ccacgaaaac acctgcggca cgacttcaaa cgcgccgtcg gtcgcattaa acccgaataa
    11281 aacctgtccg cccgcctttg ccgcagcgac cacgccgacg cgcggactct gcatacggac
    11341 ggcgcgtatc gcgtttgccg caaacacatc catcgccata cgctggcgcg tgtggctgcc
    11401 gtctgaaagc gcgcgtaccg gagaatccgg ggaaagtgga ttggcaaaca gcgtaacgcc
    11461 ttccgatgca agattttcct gccatacctg cattaagggc aggcctgcct gaagaaggtt
    11521 ctgacccaat gccgtctgaa ccttgccgct gccgaaaccc agcgcgtaaa cgacgtggac
    11581 ggactgccct tcgggcaaca gcaaagggcg cggggcgaaa cggcgcaagt gttgcgccgc
    11641 cgcttcggta ttttgtttgg cacgccacca ctcatccggc gcgaccgcgc tcaaatcgga
    11701 agaatgcaca agataaggca gccattgcgt ctcttgcgtc aacgcgcgca ggtgcggata
    11761 gtttttcaaa caggcaaaca atgcctccgt cggcagcttc atctcgattg cccgttcttt
    11821 cttgcagccg gacaccagca caaccggcag ggcgaaccac tgcacttcgc cttctttctc
    11881 gcaatcgagc accgcgttca cactggaaag cagcgcggca taagttccgg catcgggcga
    11941 catcgtcaac gcgagggaaa ggttgatata gtggttttgc tcaagcatcc ccctgatttc
    12001 ggtttgaagc tgcccgaacg agagtttgcg tgaagcctgg gaagaattgt gcgccaactg
    12061 gtaggcattg agcagcaggt ggtttttaat ctgattttgg ggatacgggc gcgtatcggg
    12121 caaggtaaat gtctggttca tatgtgtcgt gtaccgtttt tcgcagtgtg tgtctttcct
    12181 gtttgaaaat atatcggacg gattgccgcc gggacttgcc cgtcaatccg ccgaaacgag
    12241 aaaatgcctg tctgccaagt ctgccaatat ttcttccaca tacacttcgg caggcggatg
    12301 gaatgtcaaa ccgtcgggcg tggtgctgac gatgttcaag ttttcagcaa ccgcatctat
    12361 caccgcctgt ttgctcgtcg gccgcgacaa ttgccgcata atgtacaaat gcccgtatcc
    12421 gaatgagggg gtgctttcgt tgtaacggtt ggcaggccgg acaaacgctt ccgcgccgtg
    12481 ttccacaaag gcggcggcat aatctgtaaa acgcgccggc acataggttt tatggtcttc
    12541 aaaaaatggt ttgcccgcat tgtctgatga aacagaaaaa cgcccgagaa tggtttgcaa
    12601 taaaagctgg gaattgattt tcatacggtc aaattccaga ccgggaaatc ggcgggcgag
    12661 gttttccgca acatcttccg ttttaaacgc ctctccggtt ttcatcacat cgcgtatgcc
    12721 cgaaagcagg gtatcatttt catcaaagtt gattgtttcc cctcttgccg ggcggaaatt
    12781 caaactttct atcacttcga cggcaaccga ctcatcgcgc ctgatattgt ccccgacttc
    12841 ctcacggcat aaaagcgaac ggcggaattg gcggtcggat aaaatatcgc tgtaaaattc
    12901 tttggcaata taatcgcccc ctgccaatgc cagaatccgc tcccgcgtat gctccgccat
    12961 ccaagaaaca aaagacgcgt gcaaatcggt atccccgata tatgcgagcc tgtggcgatt
    13021 agcccattcg atgaagccgt tgacgtaaat cgggtcgtta agcgcctcca tatattcgtg
    13081 tgcgatgtaa taaaaattat gattcaatat tttttgaatc gccggaagtt tgccgccgcc
    13141 gtccaagccc ttgtcgtttt ccaaaatttc cgccagcgcc ttgagcgcgt ccaagccttt
    13201 ccgcgtccgc gcttccaagg gttcttcaag cacatccctg ccggcaaagt acataatttc
    13261 gcgcaactgc tcctgccgtt tccagcccgg gtaaacattg tatgaaatat aggcaatgcc
    13321 gtgttcggtc aggttgttcc ggcaaatcga aaaaattttg tctttaactg cgtcaggcac
    13381 ccacgaccaa atgccgtgga cgatgatata gtcaaacttc ccgaatgact catcgatggt
    13441 caaaatatct ttttcttcca gacgcacatt tttcaagccc attttttcaa tgatggcgtt
    13501 gccctgcgca acctgcctgc cggacaagtc gataccgaca aattccgcat ccgggtaata
    13561 aagagcctgc gtgatgatat tgccgcccat cgaacagccc agctccaaga ccttggcttt
    13621 tgccgctgct gcaggcttca ggcccatcat gcgggcgcga gcctccaagg cgttgatggc
    13681 ggtttgggaa aatgctttgg attcatacat caaatcatca tatgaatttt tgatgttgga
    13741 cacgtccggc acaccgttct ccgttgcagc acgcgcaaag gcggcttttt tctttttgtt
    13801 cggcatattt tgtttgtctg aaggcactat tgcccgcaag tttaaccaat tcatcctacc
    13861 cgttcaacta aatcaaatgc catctgaagg cgcggagcgt acttcagact gcatctggga
    13921 ggcgcgaagg cttcagacgg catttttgcc gctttatttc aacgcggcat catagccgcc
    13981 gtcttcaacg gcttcaatca acgcccctgc atcggtttgc gcggggtcgt atccgacggt
    14041 cgcacttttg ttttcaaggc tgacttcgac gcttgccacg ccttttacgc cttccaatat
    14101 ccgggtaacg cttttgacgc agccgccgca gctcatgccg ccgatgtcga ggataagggt
    14161 ttccatcatt ttcctttcgt tggaactgca atctgacggg cgttattgta agtcggggcg
    14221 tgaacttggg caaacgcgga aacggtgcgg cggtttggaa aaagacggac gcttgcgcat
    14281 aatggcggca attcccatca ggacgacaac aatgaacgct tcgcaaaaac cctggttgag
    14341 catcatcgcc ttggcaatcg gcgcatttat agtggattaa caaaaaccag tacgtcgttg
    14401 cctcgcctta gctcaaagag aacgattctc taaggtgctg aagcaccaag tgaaccggtt
    14461 ccgtactatt tgtactgtct gcggcttcgt tgccttgtcc tgatttttgt taatccacta
    14521 tacaacgtcg gtatcggcag cggcgcactg ttgggacatt gggtaacgca atatgtcggc
    14581 atttcccgta tcggcatcgc cggtatgctt gcggcggcgg ccgggctgtg gctgtgcctg
    14641 aacttgaacc gccatatcca aacctgaccg cgcgatgccg tctgaagccc ctcccgccct
    14701 tcagacggca ttttgattga agaaatatcc acccctgctt aaaataacgg gctttgccgt
    14761 gttttaacgc ctattttctt attccaagga tggtttatgc cgctgctgtc tgtcgagttc
    14821 gcactgttct ttctcgcttt cctgccgatt tactggggct tggcgaaata cccgtccgcc
    14881 caaaacctgc tgcttctggc tgccggtatg ggctggctct accatatcgg ccccgtattt
    14941 gcggcaatca tcgtccttta ttcctcctgc gtgtaccttt tgggcgaact gctccgttcc
    15001 gatcgcgaaa atacgcgccg cttttggctg gggtgcggca ttgccgcctc gctgaccgtc
    15061 ttgggctttt tcaaatattt cgactttttc cggccgctga ttgcccaata tgccggacaa
    15121 ggcggcgcaa tcgacatcct gatgccgctg gggctttcgt attacacctt ccagtcgctc
    15181 gcctatctgg tttactgctt ccgcgccccg cacgccgcgc gtttcgagtg gcacgagctg
    15241 ctgctgcacc tgagtttttt ccccaccgtt acctccggcc cgattatccg cgccgccgca
    15301 ttcaaaagcg cagacggcga gcaggcgggc gcattggcgc aaatccgtac ccgccaaccg
    15361 cgctcacccg tccgccccgc actcgccgtt tccctgattc tgctgggtat tgccaaaaaa
    15421 tggtggctgg cggggatgct ggcggaaaac tgggtgtcgc ccgtatttga aaatcccgcc
    15481 caattcgacg gctggggcgt attgggcggc gtgtacggct ataccttcca actcttttta
    15541 gacttttccg gatattccga tttggttatc ggcatggcga tgctgctggg tttccggctg
    15601 cccaaaaact tctccgcacc gcttcgtgct ttaaacatcc gcgcattttg ggacaaatgg
    15661 cacatcagcc tttccacctg gatacgcgac tacatctaca tccccttggg cggcagcaaa
    15721 aaaggctttt tacggacaca gctcaacctg atggcggcaa tggtactctc aggcatctgg
    15781 cacggctacg gctggaactt cctcatttgg ggcgcgctgc acggcacggc gctggtgctg
    15841 ctcaacacgg gcgatcgcta tttcggacgc aacgcgctat gccgtctgaa ataccttgcg
    15901 ccgctctcgt ggtttgttac cttccatttc gtctgcctta gctttgttgt cttcaatacc
    15961 gcaagccccg acgatgcagg cgcagttttc aatgccctct ttgccaatgc cagcggctgg
    16021 aatgcgccgc aacaggcaga catgctgctg cttgcctcgt ttgcagccgt gatgctgctc
    16081 tacccttacc tgcaacgcgc tttcgacggc gtggtcaaag gtttggaaaa aatcccgatg
    16141 tggctgtggt ttatccccgt ttccgccgtc ctgctgctga ttatcgtcct cgccccctcg
    16201 gggatacccg gctttattta tgccaatttt taagggtttg gacatgaaaa actttctttc
    16261 ccttttcgcc tccatattga tgtctgccct gattgccgtg tggttcagcc aaaaccccat
    16321 caacgcctac tggcagcaga cctaccaccg caacagcccg ctcgaaccgc tcgccgccta
    16381 cggatggtgg cggagcggtg tggcgttgca agaaaacgcc tacgcccttt cagacggcat
    16441 caaagccttc ctgtccggcg aaacgccgcc gacggctcaa gacggcggtt cggcagatat
    16501 gccgtctgaa gccgccgcat cagaagccgt ccctcaaacc ggtgaaacag aatggaaaca
    16561 agacaccgaa gccgccgccg tccgcagcgg cgacaaagtc ttttttgccg gcgactcgct
    16621 gatgcagggc gttgcaccct tcgtgcaaaa aagcctgaaa cagcaatacg gcatcgaatc
    16681 cgtcaacctc agcaaacaaa gcacggggct gtcctacccc tcattcttcg actggccgaa
    16741 aacgattgaa gaaaccctga aaaaacatcc cgaaatcagc gtgctcgccg tcttcctcgg
    16801 cccgaacgac ccgtgggatt tccccgtcgg caaacgatac ctcaaattcg cttccgacga
    16861 atgggcgcaa gaatacctga aacgcgtcga ccgcatcctt gaagccgcac acacgcaccg
    16921 cgtccaagtc gtctggctcg gcatccccta tatgaaaaaa gccaagctcg acgggcagat
    16981 gcgctacctc gacaaactgc tttcggaaca cctggaaggc aaaatcatcc tgattcccac
    17041 cgcgcacacc ctgagcggcg gggaagaccg ctacaccgac tccgtcaacg tcaacggcaa
    17101 acccgtccgc taccgcagca aggacggcat acactttacc gccgaaggac aaaaactgct
    17161 ggcggcaaaa ataatggaaa aaatcgtttt tgaaccaagt acgcaaccat caagtacaca
    17221 gccatgaacc ccaaacacct catcgcattt tccgccctgt tcgccgccac gcaggcagaa
    17281 gccctgcccg tcgcctccgt cagcctcgac accgttaccg tttccccgtc cgccccctac
    17341 accgatacaa acgggctctt gaccgactac ggcaacgccg ccgcctcgcc ttggatgaaa
    17401 aaaatccgat ccgtcgcaca aggcagcggc gagaccttcc gcatcctgca aatcggcgac
    17461 tcgcataccg ccggcgactt ctttaccgac agcctccgca aacgcctgca aaaaacttgg
    17521 ggcgacggcg gcataggctg ggtttacccc gccaacgtca aaggacagcg tatggcggcc
    17581 gtccgctata acggcaactg gcaaagcctc accagcagga acaacaccgg agacttcccg
    17641 ctcggcggca tcctcgccca caccggcagc ggcggcagca tgaccctgac cgcatcggac
    17701 ggcaagaccg gcaaacagcg catctccctg tttgccaaac ccctgctcgc cgaacaaacc
    17761 ctgaccgtca acggcaacac cgtctccgcc aacggcggcg gctggcaggt actggatacc
    17821 cgcgcggcac tgcccttgac catacagacc gaaatgccgt gggacatcgg cttcatcaac
    17881 atcgaaaatc ccgccggcgg cattaccgtt tccgccatgg gcatcaacgg cgcacaattg
    17941 acccattggt cgaaatggcg tgccgaccgt atgaacgacc ttgcccaaac cggcgccgat
    18001 ttggttatcc tttcctacgg caccaacgaa gccttcggcg acaacatcga cattgccgat
    18061 accgaacaga aatggctgga taccgtccgc caaatccgcg acagcctacc tgccgccggc
    18121 atcctcatca tcggcgcgcc cgaatccctg aaaaacacgc tcggcgtatg cggcacacgc
    18181 cccgtccgcc tgaccgaagt ccaacagatg cagcggcgca tcgcccggca gggacaaacc
    18241 atgttctggt cttggcaaaa cgccatgggc ggcatatgca gcatgaaaaa ctggctcaac
    18301 caaggatggg ccgccaaaga cggcgtacac ttctccgcca aaggctaccg gcgcgcggcg
    18361 gaaatgctcg ccgacagcct cgaagaactc gtccgcgccg ctgcaatcag gcaataatcg
    18421 gacaggaggc ggacggtatt tccgcaacag ggggatgccg tctgaaacgc ataccttcat
    18481 attgcttcag acggcatagc caccccgcgc acggtttgcc ggacgcaacc ggcattcgcc
    18541 tcaagcatcg gaaggacggg ggcgaacctc cggcatacgg cgcaaaggcg gcgtttgata
    18601 tgccgtctga aggcaaagat gataaactgc cgccttccgt tttcagacgg catattgttt
    18661 tcaaatgagg gcgttcgccg tccgcaacca taaaggaagt ttcatgaacc ggacttatgc
    18721 caatttctac ggaatgctcg ccgccgcctg ccgcaaaaac ggcaacggca cggcagtgtt
    18781 cgacggcaag gaaaaaaccg cctaccgcgc gctcaagcag gaagccgaag ccgttgcggc
    18841 gtatctgcaa aatatcggcg tgaagttcgg cgacacggtc gcgctggcgg tttccaattc
    18901 cacggaattt attaccgcct atttcgccgt atccgccatc ggcgcggttg ccgtaccgat
    18961 gaacacattt ttgaaaaaca gcgaatacgc gtatatcctg aacgactgca aggcgcgctt
    19021 cctgttcgcc tcggccggcc tgtcaaaaga attggcgggc ttgaaggcgc aaacgcccgt
    19081 cgaaaaaatc atttggacgg gccaaagccg tccggacggc gaaatggcgg aaggcgatgc
    19141 cttttttgaa gacgtgcgcc gcttccccga aaaacccgac ttgggccgcc aaccccggat
    19201 aaatgatttg gcacacatca tctacacctc cggcacgacg gggcatccca aaggtgcgct
    19261 aatcagttac gccaacctgt tcgccaacct gaacggcatc gaacgcatct ttaaaatttc
    19321 caaacgcgac cgctttatcg ttttcctgcc gatgttccac agcttcacgc tgacggctat
    19381 ggtgctgctg ccgatttata tggcgtgttc gattattttg gtcaaatccg ttttcccgtt
    19441 ttccaatgtt ttgaaacaga ccctgctcaa acgcgcgacc gtgtttttgg gcgtacccgc
    19501 gatttacacc gcgatgagca aggcgaaaat cccttggtat ttcagatggt tcaaccgcat
    19561 ccgcctgttt atcagcggcg gcgcgccttt ggcggaacaa accatcctcg atttcaaagc
    19621 caagttcccc cgcgccaaat tgctggaagg ctacggactg agcgaagcct ctcccgtcgt
    19681 cgccgtcaat acgcccgaga ggcaaaaagc ccgcagcgtc ggcatccccc tgcccggttt
    19741 ggaagccaaa gccgtcgatg aagaattggt cgaagtgccg cgcggcgaag tgggcgaact
    19801 gatcgtcagg ggcggttcgg tgatgcgggg ctacctcaat atgcctgccg ccaccgatga
    19861 aaccatcgtc aacggctggt tgaaaacggg cgatttcgtt accatagacg aagacggctt
    19921 tatctttatc gtcgaccgca aaaaagattt gattatttcc aaaggtcaaa acgtctatcc
    19981 gcgcgaaatc gaagaagaaa tctacaaact cgatgccgtc gaagccgccg ccgtcatcgg
    20041 cgtgaaagac cgttatgccg acgaggaaat cgtcgccttc gtccaattga aggaaggtat
    20101 ggatttgggc gagaacgaaa tccgccgcca cctgcgtacc gtgctggcaa atttcaaaat
    20161 ccccaaacaa atccacttta aagacgggct gccgcgcaac gctacgggca aggtattgaa
    20221 acgggtgttg aaggagcagt ttgacggaaa caaatgaacg ccgtgccgtc cgaagccccg
    20281 tccggcaaaa aaaatgcggt gaatctgctt caccgcattt ttttggcaaa cgccggagcg
    20341 aggatattta ctctgccaat tccacctgct cgtgcgccat cagttcctga ccgacatcat
    20401 ccaacaacat caaataacgt tcgtagtttt tcaaaatgtc ggcaatcagc tcgtccttgt
    20461 tcatatactg cacatcgtac ccgacgcgcc cgtcgaaaaa ataagcgtag ggtttgtaag
    20521 ttgtctgatg ccggatatgc ggcagcttgc cgtcgttaat caactggtcg gatacatcct
    20581 gcccgacaga cttaatcccg tacataaaat cgcgcatcgt ctctttccga atgacgaact
    20641 cgattgcggg ctcgtcctga tgaaacatct tatcgacccg gacgctcaag ccgtattctt
    20701 ccgaaagctc ccgttgcaac tcgtgcatag cgggcgatgc ggtatgtttg aggaatttta
    20761 aaatatcctg ctcctgcgtc tggctcatta tctgcaccag ccgttctttc cacttgccgc
    20821 ccgtccaaaa tacactggta gggttaaccc gggtctcaaa atatttctta tccgcactca
    20881 agcctttcca caggctgaaa cacattatca gcatcagcag ggcaaacggc agggaaacaa
    20941 tcagggtcat agactgcagg ttgccgagtc cgcccgagcg catcagcaaa acggcaacgg
    21001 cagacatcag cacgccccac ataaccgcct gccaccgtgg cgcgctcaag cctttgtccc
    21061 gagaggtaat attgttcagg acataaatcc cggaatcggc agaagttaca aaaaacagag
    21121 aaatgaccag caggctgacg atgctcgtca attcgggcag ggggaggtaa ttaaagaatt
    21181 taaaaagcag cgtttccgga gaggaggtca tcttttcgag cattcccccc gcaaccccgt
    21241 cattcagcca aatcgccgta ttgccgaaga cggtaaacca caaaacgccg aacaggccgg
    21301 ggatgagcaa aaccccgaag acaaactcgc ggatggtgcg cccctttgaa atgcgcgcga
    21361 taaacaaacc cacaaacggc gcccaagaac accaccacgc ccaataaagc accgtccaag
    21421 attcaaacca cggcttgtgt tcccgttcgt acgcataagt tttaaaactg aggcgcacca
    21481 gatttccgag gtagttccct atgttgtcgc cgaatgccga caacaggtaa acagtgggac
    21541 ccgccgccaa aacaaaaaac agcagcaaaa acgcaaggct caggttcaac tcgctcaaca
    21601 ccttcacgcc cttccccacg ccggatattg ccgaaacgac ggcgagggac atgacggcgg
    21661 cgataatcaa aacctgcacg ctgaagctgt tttcggcaat ccagcccatt tcctgcaatc
    21721 cggcgcccag ttgcgaagcc ccgaacccca atgtggtgat gatgccgaaa aaagtagcaa
    21781 gcaacgccat aatatcaatg gcatcgccga accttccgga aattttttct ttcaacaggg
    21841 gataaaaaca agaacgcagg gcaagcggca gcttgtagcg gaaaccgaaa taagccaaag
    21901 ccaatgcaat cgtaccgtac accgaccaag cgtgaacgcc ccaatggaac accgtgtgca
    21961 gcaatgcctg ctgctgcctg tgttccggcg tgccggccgt aatgtccgaa aaataatgca
    22021 tcaacggctc tgccacgccg aaaaacatca gacccacgcc catcccggcc gcaaacagca
    22081 tcgccagcca cgacaggaag ccgaattccg gcacatcttc atcccgtccg agcctgatgt
    22141 ttcccaaact gctgaccgag agtatcagca ggaaacccag aaaaatggaa aacgttaaaa
    22201 cataaaacca gccgaactcg gtaaaaatga cttcttttgc ccgatcgagc cacatctgca
    22261 cctgatccgg cacggttaaa accaatacca ccaaaacaca cacaaaaaac aaagtcgtca
    22321 aaataaccat cggattaaat gacgttcggc gttctataaa ttcagacagg gacaaacctt
    22381 ctcactcctt tgttaaaaac agacaaaccc ggtcatcggg caaagcggtc aaaacctgcc
    22441 gacaaaatac cggcttccgg atgacgaaat gcacaaaccg gccgaaattg ttataatcga
    22501 aaaaattaaa aatcaatacg gattattcta tcagattgat ttatcgatat ttattatatc
    22561 attaatatag tttgatttca aaccggcgga aaatgcgccg ccttccgcag gcgcgccctc
    22621 cccgccatcg gggcgtttaa cgccggattg ccgatgcggt acaatggctg atatgaagaa
    22681 aattacccct caaaacctgc gccccctgct ttcggaaagc ttgggacata ccgattttgt
    22741 caacgtcctc aacgcactga ttaaattttt gcgccgtggc ggcaaaaaat gtgcggggga
    22801 gcgtttcgac ctgattatcg acacattcaa acaagatagg gaattgctgt cccgcttcag
    22861 ccggtgtttt tacatctggc tcgcgcaaat acacatttat ccggcactca tcaaactcgg
    22921 catcttctcg cgccacagct ttgcccgaga aatgggcata cgcatctacg aacgcttcag
    22981 cccgtcatat aaagattttg ccaacttggg cgaagtcttc ctttatcttt tccattccga
    23041 aaacgacgac aaatggctgc aaacgctcaa tatccgccaa tggctggttt tatacgaact
    23101 catccggagc cacgccgagc cgtccaaatt gcagacggcg ggcatccgcc ttgccgatgc
    23161 gcgtttgcgc gccatcgaaa tgctgtctgt ctggacggca tccgaagcca tcgaacccga
    23221 cctcatccgc atcgccccgc gcctgctgga agccgattct tccttcgtcg ccctccaacg
    23281 cgaaaccgcc aaactggtcg aacactaccg caacggcacc acgccttacg acaccgccca
    23341 cctcgaagtg atgttcgacc aatgtttcag ccagattgac tatttgcgcc gcaaagggac
    23401 gggcgccggc tccggttcgt cggtcaaagt cgcccacctg ctcgaacggc tccggcagac
    23461 cgtagaccgt ctaaagctgc tcaccgacat ccaaaccggt gccggcaaca gcaaccgcct
    23521 gaccatcgcg ctgatgaact ccctcatcta cgcggcggtc gaacaataca gcacccgcca
    23581 cctgcgccgc agcagcatcc gtatgctcgc ccgcagcatt accgaaaaca aaagccacca
    23641 cggcgaacac tacatcaccc gcaaccgcaa agaatatttc aaaatgttct actcggcggc
    23701 aggcggcggc atcatcatcg ccctgatggc gctgctcaaa atccgcatcg gcacactcgg
    23761 cctcagcccc ttcctgactt ccttgtcggc tgggttcaac tacggcatcg gctttatgat
    23821 catccatatg ctgcactgca ccgtcgccac caaacagccc gcgatgactg ccgccagctt
    23881 tgccgaacag gtcgacctca acgaaggcgg caaagcggtg gacaacaaac tcgccaagct
    23941 cctcatcgac gtatgccgct cccaaagtgt cgccgtcttc ggcaacgttt ccatcgccat
    24001 ccttttggcg tgcgccatat cgttcggcta tgcccatctg caccaacagc ccatactcga
    24061 tgcccacacc gccgcctacc agttcaaatc catagacatc atcgcttacc cgacgctgtg
    24121 gtatgccgcc attgcaggtc tgtggctgtt ctgctccggc atcatcgcag gcttcttcga
    24181 caaccgcgcc gactacctca acctgcgcca acgcctgccc ttcaacccct tgctgcgtaa
    24241 aataatgcgc cccggacccc gccgcgtcct cgccgcctac atccacaaac actacggctc
    24301 actggcaggc aacttcatct tcgggatgct cttgggtatg accggctatt tcggacacct
    24361 cctcgggctg ccgctggaca tccgccacgt cgccttttcc tccgccaacc tcggctatgc
    24421 cgccgtcagc ggcaacgtcg gtttgggcac gttcgtactc ggcattttca gcgtcctcgc
    24481 catcggcctg gtcaacctct gcgtcagctt cagcctcgcc ctcttcgtcg ccctgcgctc
    24541 gcgcggcacg aaaatcggca gcatccgcaa tctgattaag agtttttgga atcagattaa
    24601 aagcaatccc tgcatacttt tcctcccgcc cgccaaagaa cagggacatc ctccttcgga
    24661 caagccttga ccggcaatgc cgtctgaagc gggattcgcc ccgaataccg ccctgatgcg
    24721 ggaaatcccc ataaa
//
LOCUS       DAXHPV010000012        24644 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.012, whole genome shotgun sequence.
ACCESSION   DAXHPV010000012 DAXHPV010000000
VERSION     DAXHPV010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 24644)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24644)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24644
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.012"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            336..980
                     /gene="rplC"
                     /locus_tag="ACFM6C_000322"
     CDS             336..980
                     /gene="rplC"
                     /locus_tag="ACFM6C_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HFC6157837.1"
                     /translation="MTLGLVGRKVGMTRVFDEQGVSVPVTVLDMSANRVTQVKSKDTD
                     GYTAVQVTFGQKKANRVNKAEAGHFAKAGVEAGRGLIEFALTEEKLAELKAGDEITVS
                     MFEVGQLVDVTGISKGKGFSGTIKRHNFGAQRTSHGNSRSHRVPGSIGMAQDPGRVFP
                     GKRMAGQYGNTKATVQKLEVVRVDAERQLLLVKGAVPGAVNSDVVVRPSVKVGA"
     gene            980..1600
                     /gene="rplD"
                     /locus_tag="ACFM6C_000323"
     CDS             980..1600
                     /gene="rplD"
                     /locus_tag="ACFM6C_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HFC6157838.1"
                     /translation="MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANAR
                     SGNRAQKTRAEVKHSTKKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVN
                     RKMYRAGMATILSQLTRDERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFVTKQLDE
                     NVYLASRNLPNVLVLEAQQVDPYSLLRYKKVIITKDAVAQLEEQWV"
     gene            1597..1911
                     /gene="rplW"
                     /locus_tag="ACFM6C_000324"
     CDS             1597..1911
                     /gene="rplW"
                     /locus_tag="ACFM6C_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HFC6157839.1"
                     /translation="MNQQRLTQVILAPIVSEKSNVLAEKRNQMTFKVLASATKPEIKA
                     AVELLFGVQVASVTTVTTKGKTKRFGRTLGRRRDVKKAYVSLAAGQELDLEAAAAAAD
                     KE"
     gene            1917..2750
                     /gene="rplB"
                     /locus_tag="ACFM6C_000325"
     CDS             1917..2750
                     /gene="rplB"
                     /locus_tag="ACFM6C_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HFC6157840.1"
                     /translation="MAIVKMKPTSAGRRGMVRVVTEGLHKGAPYAPLLEKKNSTAGRN
                     SNGHITTRHKGGGHKHHYRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADGERR
                     YIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGA
                     SAVLLAKEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIRP
                     TVRGVVMNPVDHPHGGGEGRTGEAREPVSPWGTPAKGYRTRNNKRTDNMIVRRRYSNK
                     G"
     gene            2757..3035
                     /gene="rpsS"
                     /locus_tag="ACFM6C_000326"
     CDS             2757..3035
                     /gene="rpsS"
                     /locus_tag="ACFM6C_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HFC6157841.1"
                     /translation="MARSLKKGPYVDLHLLKKVDAARASNDKRPIKTWSRRSTILPDF
                     IGLTIAVHNGRTHVPVFISDNMVGHKLGEFSLTRTFKGHLADKKAKKK"
     gene            3044..3373
                     /gene="rplV"
                     /locus_tag="ACFM6C_000327"
     CDS             3044..3373
                     /gene="rplV"
                     /locus_tag="ACFM6C_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003795898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HFC6157842.1"
                     /translation="MRVNAQHKNARISAQKARLVADLIRGKDVAQALNILAFSPKKGA
                     ELIKKVLESAIANAEHNNGADIDELKVVTIFVDKGPSLKRFQARAKGRGNRIEKQTCH
                     INVTVGN"
     gene            3383..4075
                     /gene="rpsC"
                     /locus_tag="ACFM6C_000328"
     CDS             3383..4075
                     /gene="rpsC"
                     /locus_tag="ACFM6C_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HFC6157843.1"
                     /translation="MGQKINPTGFRLAVTKDWASKWFAKSTDFSTVLKQDIDVRNYLR
                     QKLANASVGRVVIERPAKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGVPVHVN
                     IEEIRRPELDAQIIADGIAQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGA
                     DIARSEWYREGRVPLHTLRANVDYATSEAHTTYGVLGLKVWVYTEGNIKSSKPEHESK
                     QRKAGRRNAAAN"
     gene            4059..4475
                     /gene="rplP"
                     /locus_tag="ACFM6C_000329"
     CDS             4059..4475
                     /gene="rplP"
                     /locus_tag="ACFM6C_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008955643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HFC6157844.1"
                     /translation="MLQPTRLKYRKQQKGRNTGIATRGNKVSFGEFGLKAVGRGRLTA
                     RQIEAARRAMTRHIKRGGRIWIRVFPDKPITEKPIQVRMGGGKGNVEYYIAEIKPGKV
                     LYEMDGVPEELAREAFELAAAKLPIPTTFVVRQVGQ"
     gene            4475..4666
                     /gene="rpmC"
                     /locus_tag="ACFM6C_000330"
     CDS             4475..4666
                     /gene="rpmC"
                     /locus_tag="ACFM6C_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009175233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HFC6157845.1"
                     /translation="MKANELKDKSVEQLNADLLDLLKAQFGLRMQNATGQLGKPSELK
                     RVRRDIARIKTVLTEKGAK"
     gene            4666..4929
                     /gene="rpsQ"
                     /locus_tag="ACFM6C_000331"
     CDS             4666..4929
                     /gene="rpsQ"
                     /locus_tag="ACFM6C_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HFC6157846.1"
                     /translation="MSETKNVRTLQGKVVSDKMDKTVTVLVERKVKHPLYGKIIRLST
                     KIHAHDENNQYGIGDVVVISESRPLSKTKSWVVSELVEKARSI"
     gene            5151..5519
                     /gene="rplN"
                     /locus_tag="ACFM6C_000332"
     CDS             5151..5519
                     /gene="rplN"
                     /locus_tag="ACFM6C_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012728338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HFC6157847.1"
                     /translation="MIQMQTILDVADNSGARRVMCIKVLGGSKRRYASVGDIIKVAVK
                     DAAPRGRVKKGDVYNAVVVRTAKGVRRPDGALIKFDNNAAVLLNNKLEPLGTRIFGPV
                     TRELRTERFMKIVSLAPEVL"
     gene            5531..5854
                     /gene="rplX"
                     /locus_tag="ACFM6C_000333"
     CDS             5531..5854
                     /gene="rplX"
                     /locus_tag="ACFM6C_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HFC6157848.1"
                     /translation="MNKIIKGDRVVVIAGKDKGKQGQVVRVLGDKVVVEGVNVVKRHQ
                     KPNPMRGIEGGIITKEMPLDISNIAILNPETNKADRVGIKLIENEGKVKRVRFFKSNG
                     SIIGA"
     gene            5864..6403
                     /gene="rplE"
                     /locus_tag="ACFM6C_000334"
     CDS             5864..6403
                     /gene="rplE"
                     /locus_tag="ACFM6C_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008955648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HFC6157849.1"
                     /translation="MARLREFYKETVVPELVKQFGYKSVMEVPRIEKITLNMGVGEAV
                     ADKKVMEHAVSDLEKIAGQKPVVTVARKSIAGFKIRDNYPVGCKVTLRRDQMFEFLDR
                     LITIALPRVRDFRGVSGKSFDGRGNYNMGVREQIIFPEIEYDKIDALRGLNITITTTA
                     KTDEEAKALLSLFKFPFKG"
     gene            6406..6711
                     /gene="rpsN"
                     /locus_tag="ACFM6C_000335"
     CDS             6406..6711
                     /gene="rpsN"
                     /locus_tag="ACFM6C_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HFC6157850.1"
                     /translation="MAKKALINRNLKRQALAKKYAAKRAAIKAVINDSNATEEERFEA
                     RLRFQSIPRNAAPVRQRRRCALTGRPRGTFRKFGLGRIKIREIAMRGEIPGVVKASW"
     gene            6727..7119
                     /gene="rpsH"
                     /locus_tag="ACFM6C_000336"
     CDS             6727..7119
                     /gene="rpsH"
                     /locus_tag="ACFM6C_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HFC6157851.1"
                     /translation="MSMHDPISDMLTRIRNAQRANKAAVAMPSSKLKCAIAKVLKEEG
                     YIEDFAVSSDVKSILEIQLKYYAGRPVIEQIKRVSRPGLRIYKASSEIPSVMNGLGIA
                     IVSTSKGVMTDRKARSQGVGGELLCIVA"
     gene            7133..7666
                     /gene="rplF"
                     /locus_tag="ACFM6C_000337"
     CDS             7133..7666
                     /gene="rplF"
                     /locus_tag="ACFM6C_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HFC6157852.1"
                     /translation="MSRVAKNPVTVPAGVEVKFGTEALVIKGKNGELSFPLHSDVAIE
                     FNDGKLAFVANNSSKQANAMSGTARALVSNMVKGVSEGFEKRLQLIGVGYRAQAQGKI
                     LNLSLGFSHPIVYEMPEGVSVQTPSQTEIVLTGSDKQVVGQVAAEIRAFRAPEPYKGK
                     GVRYVGEVVVMKEAKKK"
     gene            7680..8033
                     /gene="rplR"
                     /locus_tag="ACFM6C_000338"
     CDS             7680..8033
                     /gene="rplR"
                     /locus_tag="ACFM6C_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HFC6157853.1"
                     /translation="MDKHTTRLRRARKTRARIADLKMVRLCVFRSNNHIYAQVISAEG
                     DKVLAQASTLEAEVRGSLKSGSNVEAAAIVGKRIAEKAKAAGVEKVAFDRSGFQYHGR
                     VKALAEAARENGLSF"
     gene            8052..8570
                     /gene="rpsE"
                     /locus_tag="ACFM6C_000339"
     CDS             8052..8570
                     /gene="rpsE"
                     /locus_tag="ACFM6C_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HFC6157854.1"
                     /translation="MAKHEIEERGDGLIEKMVAVNRVTKVVKGGRIMAFSALTVVGDG
                     DGRIGMGKGKSKEVPVAVQKAMDQARRSMIKVPLKNGTIHHEVIGRHGATKVFMQPAK
                     EGSGVKAGGPMRLVFDAMGIHNISAKVHGSTNPYNIVRATLDGLSKLHTPADIAAKRG
                     LTVEDILGVNHG"
     gene            8563..8748
                     /gene="rpmD"
                     /locus_tag="ACFM6C_000340"
     CDS             8563..8748
                     /gene="rpmD"
                     /locus_tag="ACFM6C_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HFC6157855.1"
                     /translation="MAEQKKIRVTLVKSLIGTIESHRACARGLGLRRREHTVEVLDTP
                     ENRGMINKISYLLKVES"
     gene            8750..9184
                     /gene="rplO"
                     /locus_tag="ACFM6C_000341"
     CDS             8750..9184
                     /gene="rplO"
                     /locus_tag="ACFM6C_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HFC6157856.1"
                     /translation="MFLNTIQPAVGATHAGRRVGRGIGSGLGKTGGRGHKGQKSRSGG
                     FHKVGFEGGQMPLQRRLPKRGFKSLTASANAQLRLSELESIAVNEIDILVLKQAGLIA
                     STVSNVKVIASGEISKAVALKGIKVTKGARAAIEAVGGKIEM"
     gene            9196..10506
                     /gene="secY"
                     /locus_tag="ACFM6C_000342"
     CDS             9196..10506
                     /gene="secY"
                     /locus_tag="ACFM6C_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HFC6157857.1"
                     /translation="MANQQTSSGSSKFGDLKKRLLFLFGALIVFRIGAHIPVPGVDAV
                     ALAKLYESAGNGILGILNMFSGGSLERFSIFAIGIMPYISASIIVQLASEILPSLKAL
                     KKEGEAGRKVITKYTRYGTVLLAILQSLGVASFVFQQGIVVTSSFEFHVSTVVSLVTG
                     TMFLMWLGEQITERGIGNGISLIITAGIASGIPSGIAKLVTLTNQGSMSMLTALFIVF
                     GALLLIYLVVYFESAQRKIPIHYAKRQFNGRAGSQNTHMPFKLNMAGVIPPIFASSII
                     LFPSTLLGWFGSADTNSVLHKIAGLLQHGQLLYMALFAATVIFFCYFYTALVFSPKEM
                     AENLKKSGAFVPGIRPGEQTSRYLEKVVLRLTLFGALYITTICLIPEFLTTVLNVPFY
                     LGGTSLLILVVVTMDFSTQINSYRLTQQYDKLMTRSEMKSFSRK"
     gene            10511..10729
                     /gene="infA"
                     /locus_tag="ACFM6C_000343"
     CDS             10511..10729
                     /gene="infA"
                     /locus_tag="ACFM6C_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HFC6157858.1"
                     /translation="MAKEDTIQMQGEILETLPNATFKVKLENDHIVLGHISGKMRMHY
                     IRISPGDKVTVELTPYDLTRARIVFRAR"
     gene            10750..10863
                     /gene="rpmJ"
                     /locus_tag="ACFM6C_000344"
     CDS             10750..10863
                     /gene="rpmJ"
                     /locus_tag="ACFM6C_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006232360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HFC6157859.1"
                     /translation="MRVQPSVKKICRNCKIIRRNRVVRVICTDLRHKQRQG"
     gene            10929..11291
                     /gene="rpsM"
                     /locus_tag="ACFM6C_000345"
     CDS             10929..11291
                     /gene="rpsM"
                     /locus_tag="ACFM6C_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HFC6157860.1"
                     /translation="MARIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTK
                     AKDLDETQLDALRDQVAKYEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRT
                     RTNARTRKGPRKAIAGKK"
     gene            11311..11706
                     /gene="rpsK"
                     /locus_tag="ACFM6C_000346"
     CDS             11311..11706
                     /gene="rpsK"
                     /locus_tag="ACFM6C_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HFC6157861.1"
                     /translation="MAKANTASRVRKKVRKTVSEGIVHVHASFNNTIITITDRQGNAL
                     SWATSGGAGFKGSRKSTPFAAQVAAEAAGKVAQEYGVKNLEVRIKGPGPGRESSVRAL
                     NALGFKITSITDVTPLPHNGCRPPKKRRI"
     gene            11726..12346
                     /gene="rpsD"
                     /locus_tag="ACFM6C_000347"
     CDS             11726..12346
                     /gene="rpsD"
                     /locus_tag="ACFM6C_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HFC6157862.1"
                     /translation="MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDSAPGQHGAK
                     KPRLSDYGLQLREKQKIRRIYGVLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVV
                     YRMGFGSTRAEARQLVSHKAIVVNGQVVNIPSFQVKAGDVVSVREKAKKQVRIQEALG
                     LATQIGLPGWVSVDADKLEGVFKNMPDRSELTGDINEQLVVEFYSK"
     gene            12372..13358
                     /gene="rpoA"
                     /locus_tag="ACFM6C_000348"
     CDS             12372..13358
                     /gene="rpoA"
                     /locus_tag="ACFM6C_000348"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009313011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HFC6157863.1"
                     /translation="MQNSTTEFLKPRQIDVNTFSATRAKVSMQPFERGFGHTLGNALR
                     RILLSSMNGFAPTEVAIAGVLHEYSTVDGIQEDVVDILLNIKGIVFKLHGRSQVQLVL
                     KKSGSGVVSAGDIELPHDVEILNPGHVICHLADNGQIEMEIKVEQGRGYQSVSGRQVV
                     RDENRQIGAIQLDASFSPISRVSFEVEPARVEQRTDLDKLVLDIETDGSIDPEEAVRS
                     AARILIDQMSIFADLQGTPVEEVEEKAPPIDPVLLRPVDDLELTVRSANCLKAEDIYY
                     IGDLIQRTETELLKTPNLGRKSLNEIKEVLASKGLTLGSKLEAWPPVGLEKP"
     gene            13382..13750
                     /gene="rplQ"
                     /locus_tag="ACFM6C_000349"
     CDS             13382..13750
                     /gene="rplQ"
                     /locus_tag="ACFM6C_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HFC6157864.1"
                     /translation="MRHRNGNRKLNRTSSHRAAMLRNMANSLLTHETIVTTLPKAKEL
                     RRVVEPLITLGKKPSLANRRLAFDRTRDRDVVVKLFGDLGPRFTARNGGYVRVLKYGF
                     RKGDNAPLALVELVDKPAAE"
     gene            13897..14610
                     /gene="minC"
                     /locus_tag="ACFM6C_000350"
     CDS             13897..14610
                     /gene="minC"
                     /locus_tag="ACFM6C_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004857 - enzyme inhibitor activity
                     [Evidence IEA];
                     GO_process: GO:0000918 - division septum site selection
                     [Evidence IEA];
                     GO_process: GO:1901891 - regulation of cell septum
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HFC6157865.1"
                     /translation="MMVYIMNAFDIKSTKMDVLSISLHTSDLFDLEDVLVKLGKKFQE
                     SGVVPFVLDVQEFDYPESLDLAALVSLFSRHGMQILGLKHSNERWAAAAMKYHLLFCL
                     SHSENVKELGQVEVQNTEDGQKARKTVLITSPVRTGQQVYAEDGDLIVTGAVSQGAEL
                     IADGNIHIYAPMRGRALAGAKGDTSARIFIHSMQAELVSVAGIYRNFEQDLPNHLHKQ
                     PVQILLQDNRLVISAIGSE"
     gene            14638..15453
                     /gene="minD"
                     /locus_tag="ACFM6C_000351"
     CDS             14638..15453
                     /gene="minD"
                     /locus_tag="ACFM6C_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0000918 - division septum site selection
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinD"
                     /protein_id="HFC6157866.1"
                     /translation="MAKIIVVTSGKGGVGKTTTSASIATGLALRGYKTAVIDFDVGLR
                     NLDLIMGCERRVVYDLINVIQGEATLNQALIKDKNCENLFILPASQTRDKDALTREGV
                     EKVMQELSGKKMGFEYIICDSPAGIEQGALMALYFADEAIVTTNPEVSSVRDSDRILG
                     ILQSKSHKAEQGGSVKEHLLITRYSPERVAKGEMLSVQDICDILHIPLLGVIPESQNV
                     LQASNSGEPVIHQDSVAASEAYKDVIARLLGENREMRFLEAEKKSFFKRLFGG"
     gene            15457..15720
                     /gene="minE"
                     /locus_tag="ACFM6C_000352"
     CDS             15457..15720
                     /gene="minE"
                     /locus_tag="ACFM6C_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division topological specificity factor
                     MinE"
                     /protein_id="HFC6157867.1"
                     /translation="MSLIEFLFGRKQKTATVARDRLQIIIAQERAQEGQAPDYLPTLR
                     KELMEVLSKYVNVSLDNIRISQEKQDGMDVLELNITLPEQKKV"
     gene            15724..16644
                     /gene="oxyR"
                     /locus_tag="ACFM6C_000353"
     CDS             15724..16644
                     /gene="oxyR"
                     /locus_tag="ACFM6C_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator OxyR"
                     /protein_id="HFC6157868.1"
                     /translation="MTLTELRYIVAVAQERHFGRAARRCFVSQPTLSIAIKKLEEELA
                     VSLFDRSSNDIITTEAGERIVAQARKVLEEAELIRHLANEEQNELEGAFKLGLIFTVA
                     PYLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPGIVTEPL
                     YDEPFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQ
                     GLTNTLQGSSINTIRHMVASGLAISVLPATALTENDHMLFSIIPFEGTPPSRRVVLAY
                     RRNFVRPKALSAMKAAIMQSQLHGVSFIRD"
     gene            complement(16641..16874)
                     /locus_tag="ACFM6C_000354"
     CDS             complement(16641..16874)
                     /locus_tag="ACFM6C_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157869.1"
                     /translation="MAIVRQGEATPYWFLLIHYTWHCIGTDENIHSDAKVEYLQDGSF
                     RGDAILKIDDDGNILAYRVVGSGKWRFENNACA"
     gene            17217..17606
                     /locus_tag="ACFM6C_000355"
     CDS             17217..17606
                     /locus_tag="ACFM6C_000355"
                     /inference="COORDINATES: protein motif:HMM:NF017109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF723 domain-containing protein"
                     /protein_id="HFC6157870.1"
                     /translation="MRYTIKTFQTLADETFPSKNFKILLFNGVARPITIVCPTHGVQT
                     VSAGQAFIRSKHGCPACGLVLSTSVLASRGRSVSILDTATGETLSFPSVQAAAKALNT
                     SYGSIRTKLDGRSSPDNLVCNRYKVMP"
     gene            complement(17977..20814)
                     /locus_tag="ACFM6C_000356"
     CDS             complement(17977..20814)
                     /locus_tag="ACFM6C_000356"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HFC6157871.1"
                     /translation="MLDKYSPAEIESKHYQNWESQGYFQPDMDLTKPSFSIQLPPPNV
                     TGTLHMGHAFNQTIMDGLTRYYRMKGCNTAWIPGTDHAGIATQIVVERQLAAQNVSRH
                     DLGREKFLEKVWEWKEVSGGTITQQMRRVGCSADWTREYFTMDDVRAETVTEVFVRLY
                     EQGLIYRGKRLVNWDPVLGTAVSDLEVESVEEQGSMWHIRYPLADNPAEAVIVATTRP
                     ETLLGDVAVAVNPEDERYTHLIGKELILPLTGRTIPVIADKYVEKDFGTGCVKITPAH
                     DFNDYEVGKRHDTRLINVFDLEAKVLANAEVFNFKGEAQQGFALPEKYAGLDRFAARK
                     QMVADLQEQGLLVEIKAHTLMTPKGDRTGSVIEPMLTSQWFVAMSATPNGGEPDSEFK
                     GLSLADKAKKAVDSGAVRFIPENWVNTYNQWMNNIQDWCISRQLWWGHQIPAWYDETG
                     NVYVARNQAEAEKQAGKTGLTREEDVLDTWFSSALVPFSTLGWPSETDELKAFLPSNV
                     LVTGYEIIFFWVARMIMMTTHFTGKVPFKDVYIHGIVRDHEGKKMSKSEGNVIDPVDL
                     IDGIGLDKLLVKRTTGLRKPETAPKVEEATKKLFPEGIPSMGADALRFTMASYASLGR
                     SVNFDFKRAEGYRNFCNKIWNATNFVLMNTENQDCGYGATAAEPRGYSFPDMWIIGRL
                     NQTIEQVTQAYETYRFDLSAETLYSFVWNDYCDWYLELAKVQLQTGCASRQRATRHTL
                     LRVLEAALRLLHPIIPFITEELWQTVAPMCDAKTADSIMLARFPEADSGEIVQTAFEQ
                     MTVLQDLIGAVRNLRGEMGIQPNVKAPLFVESTDDLADYLKYLPMMTRLTEAQQVAAL
                     PESEDAPVAVCNGARLMLKVEIDKAAETARLNKEAEKLQKALDKLNAKLSKPGYTEKA
                     PAHLVEKDKADLAELEDKMAKVQNQLAKLKD"
     gene            complement(20911..21720)
                     /gene="zupT"
                     /locus_tag="ACFM6C_000357"
     CDS             complement(20911..21720)
                     /gene="zupT"
                     /locus_tag="ACFM6C_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HFC6157872.1"
                     /translation="MPDFSMSNLAVAFSITLAAGLFTVLGSGLVMFSKTPNPRVLSFG
                     LAFAGGAMVYVSLTEIFSKSSEAFAEIYDKDHAFAAATMAFLAGMGGIALIDRLVPNP
                     HETLDAQDPSFQESKRRHIARVGMMAAFAITAHNFPEGLATFFATLENPAVGMPLALA
                     IAIHNIPEGISIAAPVYFATRSRKKTVWACLLSGLAEPLGAALGYLVLQPFLSPAVFG
                     SVFGVIAGVMVFLALDELLPAAKRYSDGHETVYGLTMGMAVIAVSLVLFHF"
     gene            complement(21901..23157)
                     /locus_tag="ACFM6C_000358"
     CDS             complement(21901..23157)
                     /locus_tag="ACFM6C_000358"
                     /EC_number="1.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008718 - D-amino-acid dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0055130 - D-alanine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid dehydrogenase"
                     /protein_id="HFC6157873.1"
                     /translation="MKVLVLGAGVAGVSSAWYLAEAGHEVTVIDRAEGVAMETSFANA
                     GQLSYGYTTPWAAPGIPTKALKWLFKSHPPLLFRPDGSLYQIEWLWQMLQNCTAAHYQ
                     TNKERMVRISEYSREMFRRFEAQTGMNFEERKKGTLQIFRQTKEVEAAEQDIAVLERY
                     GVPYRRLKPEECAEFEPALARVTAKIAGGLHLPADATGDCHLFTENLYKLCQEKGVQF
                     HFNQTISRIDHNGLRIKAVETETGRFEADAVVCALGCFSRTVLAQLDLDLPIYPVKGY
                     SLTLPVTNSDGAPVSTVLDESYKVAITRFDNRIRVGGMAELSGYEIKLPEKRRETLAL
                     VVNDLFPEGGDLSQALFWSGLRPMTPDSTPLIGRTRFENLFLNTGHGTLGWTMSLGSA
                     KLTADIVSGKDTEIRSDDLSLSRYQA"
     gene            complement(23236..24627)
                     /locus_tag="ACFM6C_000359"
     CDS             complement(23236..24627)
                     /locus_tag="ACFM6C_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005283 - amino acid:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine/glycine:cation symporter family protein"
                     /protein_id="HFC6157874.1"
                     /translation="MQLFLDNLKAFFETVSGWVWGSVMLMLLVGTGIVLTVMLKGLQF
                     TMLGYALKQAFVPSKKYEGGEGHEGDISHFAALMTALSATIGTGNIAGVATAVVTGGP
                     GAVFWMWMTAIFGMATKYGEGVLAVKYRVNNSKGEMSGGPMYYIEKGLGKNWKWMAVA
                     FALFGTFASFGIGSSVQSNSVAQAVQTSFGIEPAYTGITLTVLTAVVVLGGIKGIAKA
                     ASFIVPAMAVFYVLGGLSIIAINSDALMPAVKLIFSDAFSAQAVAGGAIGTVIRYGVA
                     RGVFSNEAGMGSAPIAAAAAKTDHPVRQALVSMTGTFLDTIVVCSITGIVLVMGLLGA
                     GGEFVKPEVSGAALTTVTFQKMLPGIGGWIVTIGLIFFAYSTILGWCYYGEKCAVYVF
                     GEKFAGLYRVGYVSSVMLGTVLSLDLVWLASDTFNGLMALPNLIALLLMAKVIVNETR
                     DFKQKITNGELPH"
BASE COUNT         6376 a         5230 c         6233 g         6805 t
ORIGIN      
        1 cacagcctca tcacccgcat cgatttcaac ctgttttgcc gctttgacga actgagcatc
       61 cccgattaca gtcatcaacc atattccggt ttgtcggaga aagatgcata cgctgtgatg
      121 accggatacc gaccctttaa aagagtccga ccctatgccg tctgaaaatt caaaacgctt
      181 cagacggcat attgaagata tttctgatat ttctgttgat atttctttaa cttgtcagat
      241 ataatgccga gcttggtaca tttgtgccaa gtttaacttt gtctgaaaga caggccaatc
      301 gtagcctgtc cctttacttt aaaaggaaaa taatcatgac tttaggtctg gttggacgca
      361 aagttggtat gacccgcgtg ttcgacgaac agggtgtttc tgttccggta accgttttgg
      421 atatgtctgc caaccgcgtt acacaagtaa aatccaaaga tactgacggc tatactgccg
      481 ttcaagttac ctttggtcag aaaaaagcca atcgtgtcaa caaagccgaa gccgggcact
      541 ttgcaaaagc aggtgttgaa gccggtcgcg gtttgattga gtttgctttg actgaagaaa
      601 aactggctga attgaaagct ggtgacgaaa tcaccgtttc tatgtttgaa gtcggtcaac
      661 tggtcgatgt aaccggtatc tctaaaggta aaggtttctc cggcacgatt aaacgtcata
      721 acttcggtgc ccaacgtact tcccacggta actcccgttc tcaccgcgtt ccaggttcta
      781 tcggtatggc gcaagacccg ggtcgcgtgt tccccggtaa acgcatggcc ggccaatacg
      841 gcaacaccaa agcaactgtt caaaaattgg aagttgtccg tgttgatgca gaacgccaac
      901 tgctgttggt taagggtgct gttccgggtg cggtcaacag cgatgttgta gttcgtccca
      961 gcgtgaaagt aggtgcgtaa tggaattgaa agtaattgac gctaaaggac aagtttcagg
     1021 cagcctgtct gtttctgatg ctttgttcgc ccgcgaatac aatgaagcgt tggttcatca
     1081 gctggtaaat gcctacttgg caaacgcccg ctctggtaac cgtgctcaaa aaacccgtgc
     1141 cgaagtaaaa cactcaacca aaaaaccatg gcgtcaaaaa ggtaccggcc gcgcccgttc
     1201 cggtatgact tcatctccgc tgtggcgtaa aggtggtcgc gcgttcccga acaaacccga
     1261 cgaaaacttc actcaaaaag taaaccgcaa aatgtaccgt gccggtatgg cgactattct
     1321 gtcccaattg actcgtgacg agcgtttgtt tgcgattgag gcgttgactg ccgaaactcc
     1381 taaaaccaaa gtttttgctg aacaagtgaa aaatctgggt ctggagcaag tgttgtttgt
     1441 aaccaaacag ctcgacgaga atgtttactt ggcttcacgc aacttgccaa acgtgttggt
     1501 tttggaagct caacaagttg atccttacag cttgctgcgt tacaaaaaag taatcatcac
     1561 taaagatgca gttgcacaat tagaggagca atgggtatga atcaacaacg tttgactcaa
     1621 gtgattttgg cacctatcgt ttctgaaaaa agcaacgtat tggctgaaaa acgcaaccaa
     1681 atgacgttta aagtcttggc aagtgcaacc aaacctgaaa tcaaagcggc tgtcgagctg
     1741 ctgtttggtg ttcaagttgc ttctgtaact accgttacaa ctaaaggcaa aactaagcgt
     1801 tttggtcgta ctttgggccg ccgccgcgat gttaaaaaag cttatgtaag cttggctgcc
     1861 ggtcaagagt tggatttgga agccgctgct gcagctgcag ataaggaata aacaaaatgg
     1921 caatcgttaa aatgaagccg acctctgcag gccgtcgcgg catggttcgc gtggtaacag
     1981 aaggtttgca caaaggtgcg ccttatgcac ctttgctcga aaagaaaaat tctactgctg
     2041 gtcgtaacag taatggtcat atcaccaccc gtcacaaagg cggcggtcat aaacaccatt
     2101 accgtgttgt agactttaaa cgtaacaaag acggcattcc tgccaaagta gagcgtatcg
     2161 aatacgatcc taaccgtact gccttcatcg cactgttgtg ctatgcagac ggcgagcgtc
     2221 gttacatcat tgctcctcgc ggtattcaag ccggtgccgt attggtttcc ggtgctgaag
     2281 ctgccattaa agtaggcaac accctgccga ttcgcaacat tcccgttggt acgactatcc
     2341 actgtatcga aatgaaaccc ggtaaaggtg ctcaaatcgc acgttctgcc ggtgcttctg
     2401 cggtattgct ggctaaagaa ggcgcgtacg ctcaagtccg cctgcgctct ggcgaagtcc
     2461 gtaaaatcaa cgtaaattgc cgtgcgacca tcggtgaagt tggtaacgaa gagcaaagcc
     2521 tgaaaaaaat cggtaaagcc ggtgccaacc gttggcgcgg tattcgtccg accgtacgcg
     2581 gtgttgtcat gaatcctgtc gatcacccgc atggtggtgg tgaaggccgt acgggcgagg
     2641 cccgcgaacc ggtcagccca tggggtactc ctgctaaagg ctaccgcact cgtaataaca
     2701 aacgcacgga taacatgatt gttcgtcgcc gttactcaaa taaaggttaa tttagtatgg
     2761 ctcgttcatt gaaaaaaggc ccatatgtag acctgcattt gctgaaaaaa gtagatgctg
     2821 ctcgcgcaag caacgacaaa cgcccgatta aaacctggtc tcgtcgttct accattctgc
     2881 ctgattttat cggtctgacc attgctgtgc acaacggccg cacccatgtg cctgtgttta
     2941 tcagcgacaa tatggttggt cataaattag gcgaattctc attgacccgt acctttaaag
     3001 gccacttggc cgataaaaag gctaaaaaga aataaggtga atcatgagag taaatgcaca
     3061 acataaaaat gcccgtatct ccgctcaaaa ggctcgtttg gtagctgatt tgattcgtgg
     3121 taaagacgtt gcccaagctt tgaatatttt ggctttcagt cctaaaaaag gtgccgagct
     3181 gattaaaaaa gtattggagt cagctattgc taatgccgag cacaataacg gtgcggacat
     3241 tgatgaactg aaagtggtaa ctatctttgt tgacaaaggc ccaagcttga aacgttttca
     3301 agctcgcgcc aaaggtcgcg gtaaccgcat cgaaaaacaa acttgtcata tcaatgtgac
     3361 agtgggtaac taaggaaaag ctatgggaca aaagattaac cctacaggct ttcgcctggc
     3421 ggtaactaaa gactgggctt caaaatggtt tgctaaaagc accgactttt ctactgtttt
     3481 gaagcaggat atcgatgttc gcaattattt gcgtcaaaaa ttggccaatg cttcggttgg
     3541 tcgagtggtt attgaacgcc ctgcaaaatc tgcacgcatt accattcact ccgctcgtcc
     3601 gggtgtggtt atcggtaaaa aaggtgagga tatcgaggtt ttgaaacgtg acttgcaagt
     3661 cttgatgggt gtacctgttc atgtaaatat tgaagagatt cgccgtcctg agttggatgc
     3721 tcaaattatt gctgacggta ttgcccagca gttggaaaag cgcgttcaat tccgtcgtgc
     3781 tatgaaacga gcaatgcaaa atgcaatgcg ttctggtgct aaaggcatta agattatgac
     3841 ttcaggccgt ctgaatggtg cggatattgc ccgtagcgaa tggtatcgtg aaggtcgcgt
     3901 gccactgcat actttacgtg caaatgtaga ttatgcaacc agcgaagcgc acaccacata
     3961 tggtgtattg ggtctgaaag tttgggttta tacggaaggc aatattaaat cttccaaacc
     4021 tgaacatgag agtaaacaaa gaaaggcagg tagacgtaat gctgcagcca actagactga
     4081 aataccgtaa gcaacaaaag ggtcgcaata ctggcatcgc tactcgcggt aataaggtaa
     4141 gtttcggtga gttcggcttg aaagccgtag gtcgtggtcg tttgactgcc cgtcaaatcg
     4201 aagctgctcg tcgtgcaatg acccgtcata tcaaacgtgg tggtcgtatt tggattcgtg
     4261 tattccctga taaaccgatt actgaaaagc ctattcaagt tcgtatgggt ggcggtaaag
     4321 gtaacgtgga atattacatt gccgaaatta aaccaggtaa agtgttgtat gaaatggatg
     4381 gcgttccaga ggaactggct cgtgaagcat tcgagttggc tgctgccaaa ttgcctattc
     4441 ctacaacctt tgtagtaaga caggtgggtc aataatgaaa gcaaatgaat tgaaagacaa
     4501 atccgttgag cagttgaatg cagatttgtt ggacttgttg aaagctcagt ttggcttacg
     4561 tatgcaaaac gctaccggtc aattaggcaa accaagtgaa ttgaaacgtg tacgtcgcga
     4621 tattgctcgt attaaaaccg ttttaactga aaaaggtgct aagtaatgag cgaaactaaa
     4681 aatgttcgta ctttgcaagg caaagtagta agcgacaaaa tggataaaac cgtaacagta
     4741 ttggttgagc gtaaagtaaa acatccgctg tatggtaaga ttattcggtt atctactaaa
     4801 atccatgccc atgatgaaaa taatcaatat ggaattggtg atgtggttgt tatatcggaa
     4861 tcccgtccat tgtcaaaaac taaatcttgg gttgtcagtg agctggttga gaaagcacgt
     4921 tctatttaag aattaaagca acgtgcttgg aatgggaaac gaagtattgc agcaaattta
     4981 atttgcgtgt aaacttcgtt tcctgtcttt cagtttcttc tggaagtttc ttccctttcg
     5041 gggtccaaga ctggtttact tgaaccgcaa ggtttcattt aataagcagc ggctttgctg
     5101 taagttatct gaaagtggta aattaagttg gttaatttaa aggtaataac atgattcaaa
     5161 tgcagaccat cttagatgtg gctgataact ctggtgcgcg tcgcgtaatg tgtatcaagg
     5221 tattgggcgg atctaagcgt cgctacgctt ctgttggcga tattattaaa gtggcagtta
     5281 aagatgcggc tccgcgtggc cgtgtcaaaa aaggcgatgt atataatgcg gtagttgttc
     5341 gtactgctaa gggtgtacgt cgtcctgatg gtgcgttaat taaattcgat aacaatgccg
     5401 ccgtgttact gaataataaa cttgaacctt tgggtactcg tatctttggt ccggtaaccc
     5461 gtgaattgcg tactgagcga tttatgaaaa tcgtttcatt ggcacctgaa gtattataag
     5521 gaatggcacg atgaataaaa tcattaaagg cgatagggtt gtagtaattg ctggtaagga
     5581 taaaggtaag cagggtcaag tagttcgagt gttgggtgat aaagttgttg ttgagggcgt
     5641 taatgttgta aaacgccatc aaaaacctaa tccaatgcgt ggcattgagg gcggtattat
     5701 tactaaagaa atgcctttgg atatttctaa tatcgcaatc ctgaatccgg aaactaataa
     5761 agcggaccgt gttggtatta agctgattga aaatgaaggc aaagttaaac gcgttcgttt
     5821 cttcaaatca aatggctcta tcattggggc ataaggagat aacatggctc ggttgagaga
     5881 gttttataaa gagacagttg ttcctgaatt ggttaaacaa tttggttaca aatcagtaat
     5941 ggaagtcccg cgtattgaaa aaatcacctt gaatatgggt gtgggtgagg ctgttgctga
     6001 caaaaaagtt atggaacatg ctgtttccga tttagagaaa attgccggtc aaaaaccggt
     6061 tgttactgtt gcccgtaaat ctatcgcagg ttttaaaatc cgtgataact atccggttgg
     6121 ttgcaaagta acattgcgtc gtgatcaaat gtttgaattc ttggatcgtt tgattactat
     6181 tgcattacct cgcgtacgtg acttccgtgg tgtgagcggt aaatcatttg atggccgtgg
     6241 caattacaat atgggtgttc gtgagcaaat tatttttccg gaaattgaat acgataaaat
     6301 tgatgctttg cgtggtttga atattactat tactactaca gcaaaaaccg atgaggaagc
     6361 gaaagcttta ttgtcattgt ttaaatttcc gttcaaagga taatcatggc taagaaagca
     6421 cttattaatc gtaatctgaa acgtcaagct ttggctaaaa aatatgcggc taaacgcgcg
     6481 gcaattaaag cggtaatcaa tgattcgaat gcaactgagg aagagcgttt tgaggctcgt
     6541 ttgaggtttc aatccattcc tcgtaatgcg gcacctgtgc gtcaacgtcg tcgttgtgct
     6601 ttgacaggtc gccctcgtgg tactttccgt aaatttggtt tgggtcgtat taaaatccgt
     6661 gaaatcgcca tgcgtggcga aattccgggt gttgttaaag ccagctggta ataggagtaa
     6721 ttaagaatga gtatgcatga tcctatttcc gatatgttga ctcgtatccg caatgcgcaa
     6781 cgtgctaata aagcagcggt tgcaatgcct tcttcaaaat taaagtgtgc tattgcaaag
     6841 gtattgaaag aagaaggata tattgaggac ttcgcagttt catctgacgt aaagtctata
     6901 ttggaaattc aattaaaata ctatgcaggt cgtcctgtaa ttgaacaaat caagcgtgta
     6961 tctcgccccg gtttgcgtat ttataaagcg tctagtgaga ttccaagtgt tatgaatggc
     7021 ttgggtattg ctattgttag tacttctaaa ggtgtaatga ctgatcgtaa agcacgttct
     7081 caaggtgttg gtggtgagtt gttatgcatt gtagcctagt ggaggaaaag aaatgtcacg
     7141 tgtcgcaaaa aacccagtga ctgttcccgc tggtgtagaa gtaaaatttg gaacagaggc
     7201 attagttatt aagggtaaga acggtgaatt gtcttttcct ttgcattctg atgtagccat
     7261 tgaatttaat gatggcaaat tggcttttgt tgcgaataac agcagtaaac aagcaaatgc
     7321 aatgtctggt actgctcgcg cattagtcag caatatggtt aaaggtgttt cagaaggttt
     7381 tgagaaaaga ttgcaattga taggtgtggg ttatcgtgct caagcacaag gtaaaatctt
     7441 gaatctgtct ttgggttttt ctcatccgat cgtatatgaa atgcctgaag gtgtctccgt
     7501 tcaaactcct agccaaacag agattgtttt aaccggctcg gataaacaag ttgttggtca
     7561 agttgctgct gagattcgtg cgttccgtgc tcctgagcct tataaaggta aaggtgttcg
     7621 ctatgtagga gaagtagtgg taatgaaaga agccaagaaa aaataattga ggttcactaa
     7681 tggataaaca tacaacccga ctccgtcgtg cacgcaaaac ccgtgctcgt attgcggact
     7741 tgaaaatggt aagattatgt gtgttccgaa gcaataatca tatttatgct caagtaatta
     7801 gtgctgaagg tgataaagta ttggctcaag cctctacatt ggaagctgag gtgcgcggta
     7861 gtctgaaatc tggaagcaat gttgaagcag ctgcaatagt tggtaaacgt attgctgaga
     7921 aggctaaagc agcaggtgta gaaaaggttg cttttgatcg ttcaggtttc caatatcacg
     7981 gtcgtgtgaa ggctttggct gaagctgctc gtgaaaatgg tttaagcttc taaatatttg
     8041 gagactttca gatggcaaaa catgaaattg aagaacgcgg tgacggtctg attgaaaaga
     8101 tggtcgcagt taaccgtgta accaaagtag ttaaaggtgg tcgcattatg gctttctctg
     8161 cgctaactgt tgttggtgat ggagatggtc gtattggtat gggtaaaggt aagtcaaaag
     8221 aagtgcctgt tgcagtccaa aaggcgatgg atcaagcacg acgctctatg attaaggtac
     8281 cattaaaaaa tggtacgatt catcatgagg ttattggtcg acatggtgct actaaagtat
     8341 ttatgcagcc tgctaaagag ggtagtggcg taaaagccgg tggacctatg cgtttggttt
     8401 ttgatgctat gggcattcat aatatctccg ccaaagtgca cggatctact aacccatata
     8461 atatcgtacg tgcaacatta gatggtttgt ctaagttgca tactcctgct gatatcgcag
     8521 ccaaacgtgg cttgacagtg gaagacattt tgggagttaa ccatggctga acaaaaaaag
     8581 attagggtta cattggttaa aagcctgatt ggtacaattg aatctcatcg tgcatgtgca
     8641 cgcggtttag gtttgcgtcg tcgcgagcat acggtagagg ttttagatac ccctgaaaac
     8701 cgtggtatga ttaataaaat cagctacttg ttgaaagtgg agtcttgata tgtttttgaa
     8761 tacaattcaa cctgctgttg gtgctacgca tgctggtcgt cgtgttggac gcggtattgg
     8821 tagtggtctt ggcaaaacgg gtggtcgtgg tcataaaggt caaaagagcc ggtctggtgg
     8881 gtttcataag gtgggtttcg agggtggtca aatgcccttg caacgacgcc tccctaaaag
     8941 aggttttaaa tctttaacag catcagctaa tgcacagctt cgtttaagtg aactggaatc
     9001 aattgctgtt aatgagattg atattttggt cttaaagcaa gcgggtctga ttgcatctac
     9061 agtctctaat gttaaagtta ttgcttctgg tgaaatttct aaggcagttg ctttgaaggg
     9121 tattaaagtt accaaaggtg cgagagctgc tatcgaggct gttggtggta agattgaaat
     9181 gtaaggttta atattgtggc taatcaacaa acgtcatcag gttcatccaa atttggagat
     9241 cttaagaaac gtcttttgtt tctatttgga gcattgattg tttttcgaat tggtgcccat
     9301 atacccgtac ctggagttga tgctgttgct ttagctaaat tatacgaaag cgctggaaac
     9361 ggcatcctgg gaatattgaa tatgttttcc ggtgggtcgt tagagcgctt tagtatattt
     9421 gcaataggaa ttatgccata tatttcagct tctattattg tacagcttgc ttctgaaatt
     9481 ttgccatcat tgaaggcttt aaaaaaagaa ggggaggctg gtagaaaggt aattacgaaa
     9541 tatactaggt atggtactgt tttgttagca attcttcaaa gtctaggtgt tgcatctttc
     9601 gtatttcagc aaggaattgt tgtaacaagt tcatttgagt ttcatgtttc cacggtagtt
     9661 tctttggtaa cgggaaccat gtttcttatg tggcttgggg agcaaattac tgaaaggggt
     9721 atcgggaacg gtatttcttt aatcattacg gcaggtattg cttcaggtat tccttcgggt
     9781 attgcaaagc tggttacact gacgaaccaa ggttctatga gcatgcttac ggcgttgttt
     9841 attgtatttg gtgccttatt attaatttat ttggttgtat actttgaaag tgcacagcgg
     9901 aagattccta ttcattatgc aaaacgccag tttaatggta gggcgggtag tcaaaatacg
     9961 catatgcctt tcaagttgaa tatggctggt gttattcccc caatttttgc ttccagtatt
    10021 attctatttc catctactct tttaggttgg tttggttcgg ctgatacaaa tagtgttttg
    10081 cacaaaatag ctggattgtt acaacacggt caattgctgt atatggcttt atttgcagcg
    10141 acagttattt tcttttgtta tttttatacg gctttggttt ttagccctaa agaaatggca
    10201 gagaatttaa aaaagagtgg tgcttttgtt cctgggatta gacctggtga gcagacctct
    10261 aggtatttag aaaaagttgt attacgtttg acattgtttg gagctcttta tattacaact
    10321 atttgtttaa ttccagagtt cttaactacg gttttaaatg taccttttta tttgggtggc
    10381 acgtctttgt tgattctagt tgttgtaacg atggatttta gtacacaaat aaattcgtat
    10441 aggcttactc aacagtatga taagttaatg actcgttcag aaatgaaatc attttctcgg
    10501 aaatagaatt atggcgaaag aagatactat ccaaatgcaa ggtgaaattc ttgaaacttt
    10561 acctaatgca acatttaaag taaaacttga gaatgaccat attgtattgg gtcatatttc
    10621 tgggaagatg cggatgcatt acattcgtat ttctccggga gataaggtca cagtagagct
    10681 gacaccttat gatctaacta gggctcgaat cgttttcaga gcaagataaa ccaataaaag
    10741 gaaaataaaa tgcgtgtaca accatctgtt aagaaaattt gccgaaattg caagattatt
    10801 cgtcgaaatc gtgtagttcg tgtaatttgt actgatctcc gtcacaaaca gcgtcaaggt
    10861 taatggaata tttcttttaa tgtgattctg tgatatagtg acacactttg ccctaaaaag
    10921 gaaaaaatat ggctcgtatt gcaggggtaa atatccctaa taacgcacac atcgtaattg
    10981 gtcttcaggc tatttacggt attggtgcta ctcgtgctaa attgatttgt gaggctgcaa
    11041 atattgcgcc tgatactaaa gcaaaagatt tggacgagac tcaattagat gctttgcgtg
    11101 accaagttgc caagtatgaa gtagaaggtg atttgcgtcg tgaggtaact atgagtatca
    11161 agcgattgat ggacatgggc tgctatcgtg gcttccgtca tcgtcgcggc ttaccatgcc
    11221 gcggtcaacg cactcgtaca aatgcgcgta cccgcaaagg tccgcgtaaa gcgattgctg
    11281 gtaagaaata aattttaagg aattttatta atggctaaag caaacacagc ttcacgtgta
    11341 cgtaaaaaag tacgtaaaac cgtgagtgag ggtattgtgc acgttcatgc atctttcaac
    11401 aataccatca ttacaatcac tgaccgtcaa ggcaatgcgt tgtcttgggc tacctctggc
    11461 ggcgctggtt ttaaaggttc tcgtaaaagt acaccatttg cagcacaagt tgcagcagaa
    11521 gcagctggta aagttgccca agagtatggc gttaaaaatt tagaggttcg tattaaaggt
    11581 ccaggtccag gtcgtgaatc ctctgtacgt gctttgaatg ctcttggttt caagattacc
    11641 agcattactg acgttacccc gttgcctcat aacggttgcc gtccgcctaa aaaacgtcgt
    11701 atttaatatt ggagtgattt gaaacatggc acgttatatt ggccctaaat gtaagttggc
    11761 acgtcgcgaa ggtacggatt tgtttttgaa gagtgcgcgc cgctctttgg attctaaatg
    11821 taaaattgat tccgctcccg gtcagcatgg tgcaaaaaaa ccgcgtttgt cagactatgg
    11881 tttgcagttg cgtgaaaaac aaaaaatccg ccgtatttat ggcgtattag aacgtcagtt
    11941 ccgtcgttat ttcgcagaag ctgatcgtcg taaaggttct accggcgagt tgctgttgca
    12001 gttgctggaa tctcgtttgg ataatgtcgt ttatcgtatg ggtttcggtt ctacccgagc
    12061 tgaagcaaga cagcttgttt ctcataaggc gatagttgtg aatggacaag ttgtcaatat
    12121 tccttctttc caagtgaaag ctggtgatgt tgtctcagtt cgtgaaaaag ccaaaaaaca
    12181 ggtacgtatt caagaagcat tgggtttggc aactcaaatc ggcttgccgg gttgggtttc
    12241 tgtagatgcg gataaacttg agggtgtgtt caaaaacatg ccggatcgct cggaattgac
    12301 cggtgatatt aatgaacagc tggtggtaga gttctactct aaataatgct agctcagtga
    12361 gggacagtta aatgcagaat agcacaaccg aatttttgaa acctcgtcaa attgatgtaa
    12421 atactttttc tgcaactcgt gcaaaagtat ctatgcagcc atttgaacgt ggtttcggtc
    12481 ataccttagg taatgctttg cgccgtatct tactgtcatc catgaatggt tttgctccta
    12541 ctgaagtagc tattgccggt gtattacacg aatattctac tgttgatggt attcaggaag
    12601 atgttgttga cattttgctg aatattaaag gtattgtgtt taaactccat ggtcgtagcc
    12661 aagttcaact tgtgttgaag aaatcaggtt caggtgtcgt atctgccggt gatattgagt
    12721 tgccgcatga tgtagaaatt ctgaatcctg gtcatgtcat ttgtcatttg gctgataacg
    12781 gtcaaattga gatggaaatt aaagtagagc aaggtcgtgg ttatcaatct gtttcaggtc
    12841 gtcaggtagt tcgtgatgag aaccgtcaga ttggtgcaat ccagttggat gcgagctttt
    12901 cgcccatcag ccgtgttagc tttgaggttg aacctgcacg tgtagagcag cggacggatc
    12961 ttgataagtt ggttttggat atcgaaaccg acggttctat tgatcctgag gaagctgtac
    13021 gcagtgcggc acgtattttg attgatcaga tgtctatttt tgctgatttg cagggtacgc
    13081 ctgtggagga ggttgaagaa aaagcacctc ctatcgaccc tgttcttttg cgtccggtgg
    13141 atgatctgga attgacagta cgttcagcta attgtttgaa agctgaggat atttattata
    13201 ttggcgattt gattcaacgc actgaaaccg agcttcttaa aacgccgaat ttgggacgta
    13261 aatctttgaa tgagattaag gaagtattgg catctaaagg tttgacactg ggttctaagt
    13321 tggaagcatg gccacctgta ggcttggaaa agccttaatg aagaattaaa ggataattga
    13381 tatgcgtcat cgtaatggca atcgcaaatt aaaccgtacc agcagtcatc gtgctgcaat
    13441 gctgcgtaat atggcgaatt cattattgac tcacgaaact attgtaacaa ctctgcctaa
    13501 ggccaaggaa ttgcgccgtg tagtagagcc gttgattaca ttgggtaaaa agccgtcatt
    13561 ggcaaaccgc cgtttggcat ttgaccgtac tcgcgaccgt gatgttgtag taaaactgtt
    13621 tggcgatttg ggtcctcgtt ttactgctcg taacggtggt tatgttcggg tgttgaaata
    13681 cggattccgt aaaggtgata atgcacctct ggcactggtt gaattggttg acaaaccggc
    13741 tgctgagtaa ttttagtcat ataacgccat ctgccgaaaa gcaggtggcg ttatttttgc
    13801 aatatctgat aggtaatagg gtattggcta tcatgtttaa aatattaatt gaatagctaa
    13861 ggtttgcgcg gtaaacttac atcattaaaa aattctatga tggtttatat aatgaatgct
    13921 ttcgatataa agtcgacaaa gatggacgta ttgtctatat ctttgcatac gtcagacttg
    13981 tttgatttgg aagatgtgct ggtcaaattg ggcaagaagt ttcaagagtc tggtgttgtt
    14041 ccatttgtgc tggatgttca agagtttgat tatcccgagt ctttggatct tgctgcattg
    14101 gtttcgttgt tttcaaggca tggtatgcaa attttgggtc tgaagcattc taatgaacgt
    14161 tgggctgctg cggctatgaa gtatcatttg ctgttttgtc tgtctcattc ggaaaatgtt
    14221 aaagaactgg gtcaggttga ggtgcagaac acggaggatg gtcagaaagc aaggaaaaca
    14281 gtattgatta catcccctgt ccgtaccggt cagcaggttt atgccgaaga tggcgatttg
    14341 attgttacgg gggcggtcag ccagggggcg gaattgattg cggatggcaa tatacatatt
    14401 tatgcgccga tgagggggcg tgctttggcc ggtgccaagg gtgatacttc tgcccgcata
    14461 tttatccact ccatgcaggc agaactggtt tctgtggcgg gtatttaccg taattttgaa
    14521 caggatttgc cgaaccatct gcacaagcag ccggtacaga tattgttgca ggataaccga
    14581 ttggttatca gtgcaattgg ctcagagtaa ttgtttgata tttaaaaagg aaatattgtg
    14641 gcaaaaatta ttgtagtaac ttcaggtaag ggcggtgtcg gtaaaacgac taccagtgcc
    14701 agtattgcga caggtttggc attacgcgga tataaaactg cggtaattga ttttgatgtg
    14761 ggtttgcgta acctcgacct cattatgggt tgcgagcgtc gtgtcgttta tgacctgatc
    14821 aatgtcattc agggggaggc gacgctcaac caggctttga ttaaagataa aaattgtgaa
    14881 aacctgttta ttttgccggc ttcccagact cgggataaag acgctttgac acgcgagggc
    14941 gtagaaaaag tgatgcagga gctgtccggc aagaaaatgg gctttgagta tattatttgc
    15001 gactctcctg ccggtattga gcagggtgca ttgatggcgt tgtattttgc tgatgaagcc
    15061 attgtaacga ccaatcctga ggtttccagt gtgcgtgact ccgacaggat tttgggaatt
    15121 ttgcaaagca aatcccataa ggcagagcaa ggcggttcgg ttaaagaaca tctgttgatt
    15181 acgcgttatt ctcccgaacg tgtggcaaaa ggcgaaatgc tgtctgtaca ggatatttgc
    15241 gatattctgc atattccttt gctgggtgtg attcctgaat cccaaaacgt cttgcaggca
    15301 tccaattccg gagaaccggt catccatcag gacagcgtgg cggcttccga ggcatataag
    15361 gacgttattg cccgtctttt gggcgagaac cgtgaaatgc gtttcttgga agctgagaaa
    15421 aaaagcttct tcaaacgtct gtttggagga taaggtatgt cattaatcga atttttattc
    15481 ggcagaaagc agaaaacggc aaccgttgcc cgcgaccgcc ttcaaatcat cattgcccaa
    15541 gagcgcgccc aagaaggtca ggctccggat tacctgccga ctttacgtaa agagttgatg
    15601 gaagtcctgt ccaaatatgt gaacgtttca ttagacaata tccgtatttc ccaggaaaaa
    15661 caggatggta tggatgtgct tgagttgaac attactttgc cggaacagaa aaaggtatag
    15721 gacatgacct taaccgaatt gcggtacatc gtcgcagtcg cccaagaacg tcatttcggc
    15781 agggcggcgc ggcgttgttt tgtcagccag cccactttgt ctattgccat taagaaattg
    15841 gaagaagagc ttgccgtctc tttgtttgac cggagcagca acgatattat tacgaccgag
    15901 gcgggggaac gtatcgttgc acaggcgcgt aaggtgttgg aagaggcaga gcttatcagg
    15961 catttggcaa atgaagaaca aaacgagctg gagggtgcgt tcaaactcgg gctgattttt
    16021 acggttgcgc cgtacctgct gccgaaactg attgtctcgt tgcgccgtac tgcaccgaaa
    16081 atgcctttga tgttggaaga gaattacacg catactttga ccgagtcgct caaacgcggg
    16141 gacgttgacg cgattatcgt tgccgaaccg tttcaagagc cgggcattgt taccgaaccc
    16201 ttgtatgacg aaccgttttt cgtgattgtc ccgaaagggc attcatttga ggaactggat
    16261 gccgtttcgc cacggatgct gggtgaggag caggttttgc tgctgacgga aggcaactgt
    16321 atgcgggatc aggtactctc aagctgttcc gaattggcgg cgaaacaacg tatacagggg
    16381 ttgaccaata cattgcaggg cagctcgatt aatacaatcc gccatatggt tgccagcggt
    16441 ttggcaatca gcgtgttacc ggcaaccgcg ctgaccgaaa acgatcatat gctgttcagc
    16501 attattccgt ttgaaggtac gccgccaagc cggcgggtcg tattggcgta ccgccgcaat
    16561 tttgtccgtc cgaaggcgtt gtcggcgatg aaggcggcga ttatgcagtc gcagcttcac
    16621 ggggtaagtt ttatccgcga ctaggcgcag gcattgtttt caaaacgcca tttccctgag
    16681 ccgacaacac ggtatgccaa gatattgccg tcatcatcga ttttgagtat agcatcgcca
    16741 cggaaactgc cgtcctgaag atattcgact tttgcatcac tgtgaatgtt ttcatcagtg
    16801 ccgatgcaat gccatgtata gtggattaac aaaaaccagt acggcgttgc ctcgccttgc
    16861 cgtactattg ccaaggcgta ccagcctgat ttgttgatgt gtgtactact gcatgggttg
    16921 ttaagccctg caagtgattt aagtgtgaag attgagtaat gcccactagt cgcaggcgcg
    16981 ggggcaggtg ctaagtcatt ggttatctcc ttactatcta tctaactaca gggtgtatta
    17041 tgcgcctcct tgttgttttg tgcaagtggt tttctgataa tttatgtaaa gatttggtaa
    17101 agacgtatag cctttttctt tgcattgtgc ttgcgcaggg tatcaggtag gtctcaaaaa
    17161 atttgaaaat ttttatgttt tcgtataaaa tcttttgcac ttatacggag tgagttatgc
    17221 ggtacaccat taaaacattt caaacccttg ctgatgaaac tttcccctct aagaacttca
    17281 aaattctttt gttcaatggg gtggcacgac ctataaccat tgtttgccct acacacgggg
    17341 tgcagactgt ttctgcgggg caagcattta tccgttccaa acacggctgt cctgcctgtg
    17401 gtttagtttt atcaacctcc gttttggcct ctaggggtcg gtcagtctcc atcctcgaca
    17461 ccgccacagg cgaaacactc tcgttcccca gcgtacaagc tgccgccaaa gccctaaaca
    17521 cctcctacgg ctctatacga accaagctcg acggacgttc gtcccccgac aaccttgtct
    17581 gtaacaggta caaagtaatg ccgtaatctc gaaacttcgt gctataataa actcctagct
    17641 tttgcaggag tttgtttttt atggatttaa atgtcgaaat caagaatttt ggcaaggttg
    17701 cccatgctag ggtttccatt cgcccgctta ccgtcatcac gggttgcaac tccacactcg
    17761 cgttccccag cgttactgcc gcaggcactg ctttgggtgt gcattttcag caaattaacc
    17821 acaggctcaa gggtcgaacg tcctgtcagg aggtgttgat ttctacaccg attatactgt
    17881 ctgcggcttc gtcgccttgt cctgattttt gttaatccac tataaaagag gccgtctgaa
    17941 aaacattttt cagacggcct tgtttattca atcaaatcag tctttcaact tcgccaactg
    18001 attttgaact tttgccattt tgtcttccaa ttccgccaaa tcggctttgt ctttttccac
    18061 cagatgcgca ggggcttttt cggtgtagcc gggtttggag agtttggcgt tgagtttgtc
    18121 caaggctttt tgcagcttct cggcttcttt gttcaagcgg gcggtttcgg cggctttgtc
    18181 gatttcgact ttcaacatca ggcgcgcgcc gttgcagacg gcgacgggcg cgtcttcgct
    18241 ttcgggtagg gcggcgactt gctgtgcttc ggtcaggcgg gtcatcatcg gcaggtattt
    18301 gaggtagtcc gccaagtcgt ccgtgctttc gacaaacagc ggggctttta cgttgggctg
    18361 gatgcccatt tcgccgcgca ggttgcggac tgcgccaatc aaatcctgca acacggtcat
    18421 ttgctcgaat gccgtctgaa caatctcgcc gctgtcggct tcggggaagc gggcgagcat
    18481 gatgctgtcg gcggttttcg cgtcgcacat aggagcgacg gtttgccaca gttcttcggt
    18541 aatgaacgga ataatcgggt gcagcaggcg tagggcggct tcgagtacgc gcaataaggt
    18601 atggcgtgtg gcgcgctggc ggctggcgca gccggtttga agctgcactt tggcgagttc
    18661 caaataccag tcgcaatagt cgttccatac gaagctgtac agggtttccg ctgacaaatc
    18721 aaagcgatag gtttcgtagg cttgcgtaac ctgttcgatg gtctgattca gacggcctat
    18781 aatccacata tcggggaagg agtagccgcg cggttcggca gcggttgcgc cgtaaccgca
    18841 gtcttggttt tcggtattca tcaagacgaa gttggtggcg ttccagattt tattgcagaa
    18901 gttgcggtag ccttcggcgc gtttgaagtc gaagttcacg ctgcgcccca agctggcgta
    18961 gctcgccatg gtgaaacgca atgcgtccgc gcccatactc ggaatgcctt cgggaaagag
    19021 ttttttggtg gcttcttcca ctttcggcgc ggtttcaggt ttgcgcaggc cggtggtacg
    19081 ttttaccagc agcttgtcca agccgatgcc gtcaatcaaa tccacaggat cgatgacgtt
    19141 gccttcggat ttggacattt ttttgccttc gtggtcgcgc acgatgccgt ggatgtacac
    19201 gtctttaaac ggtactttgc cggtaaagtg ggtggtcatc ataatcatgc gcgccaccca
    19261 gaagaagatg atttcgtagc cggttaccaa gacgttggac ggcaggaagg ctttgagttc
    19321 gtcggtttca gacggccagc cgagcgtgga aaacggcacg agcgcggagg agaaccaagt
    19381 gtccaatacg tcttcttcgc gggtcaagcc tgttttgccg gcttgttttt cggcttcagc
    19441 ctgattgcgg gcgacgtaca cattgcctgt ttcgtcgtac cacgcgggga tttgatgccc
    19501 ccaccacagt tggcgcgaaa tacaccagtc ttggatgttg ttcatccatt ggttgtaggt
    19561 attgacccag ttttcaggga taaagcgtac cgcgccgctg tcgacggctt ttttggcttt
    19621 gtcagcaagg cttaagcctt tgaattcgct gtcaggctcg ccgccgtttg gcgtggcgga
    19681 catggcgaca aaccattggc tggtcagcat tggctcaatc actgagccgg ttcggtcgcc
    19741 tttgggtgtc atcagcgtgt gtgctttgat ttcgaccaac aagccttgtt cctgcaaatc
    19801 ggcaaccatt tgtttgcgcg cggcaaagcg gtctaaacct gcgtattttt caggcagggc
    19861 aaagccttgt tgcgcttcgc ctttgaagtt gaacacttcg gcgtttgcca gcactttggc
    19921 ttccaagtcg aacacattaa tcaggcgcgt gtcgtggcgt ttgccgactt cgtagtcgtt
    19981 gaagtcgtgt gcaggcgtga ttttcacgca gcctgtgccg aagtcttttt caacgtattt
    20041 gtcggcaatc acggggatgg tacggccggt cagcggcagg attaattctt tgccgattaa
    20101 gtgggtgtaa cgttcgtctt cgggattgac ggctacggca acgtcgccca gcaacgtttc
    20161 gggacgggtg gtcgccacga taacggcttc ggcaggattg tccgccagcg gatagcggat
    20221 gtgccacata gagccttgtt cttccacgct ttctacttcc aaatcagaca ccgccgtgcc
    20281 aagcaccgga tcccagttca ccaagcgttt gccgcgataa atcaagccct gttcatacag
    20341 gcgtacgaac acttcggtta cggtttcggc gcgtacatcg tccattgtga aatactcgcg
    20401 cgtccagtcg gcagaacagc ccacacggcg catctgctgc gtaatcgtgc cgccggaaac
    20461 ttctttccat tcccacactt tttccaagaa tttttcacga cccaagtcat gacgggacac
    20521 gttttgcgca gcaagctgac gctcgaccac gatttgcgtg gcgatgcccg cgtggtcggt
    20581 gccgggaatc caggcggtat tgcagccttt catgcggtag tagcgggtca ggccgtccat
    20641 aatggtttgg ttgaaggcat ggcccatgtg cagcgtgccg gttacattgg gcggcggcag
    20701 ttggatggaa aaagacggtt tggtcaaatc catatcgggc tggaaatagc cttggctttc
    20761 ccagttttga tagtgtttgg attcgatttc ggcgggggag tatttgtcta acatgatgga
    20821 actttgtgaa attaaggtta tttttgatgt gcggattata acgcaaaaag gccgtctgaa
    20881 tcatttcaga cggcctttgg catacaggtt ttaaaaatgg aacaatacca ggctgacggc
    20941 aatcaccgcc atgcccattg tcaggccgta aacggtttca tggccgtctg aatagcgttt
    21001 ggcagccggc agcagctcgt ccaacgccaa aaacaccatc acaccggcta tcacgccgaa
    21061 taccgaacca aacacggcag gcgacaaaaa cggctgcaaa accaaatagc ccaaagccgc
    21121 ccccaacggc tcggccaagc cggatagcag acacgcccac accgttttct tacggctgcg
    21181 ggtggcaaaa taaaccggcg cggcgatgga aatgccctcc ggaatattat ggatggcaat
    21241 cgccaaggcc aaaggcatcc cgactgctgg attttccaat gtggcaaaaa acgtcgccaa
    21301 gccttcgggg aaattgtgcg cagtaatcgc aaacgccgcc atcatgccga ctcgcgcgat
    21361 atggcggcgt ttgctttctt gaaacgacgg gtcttgcgcg tctaaagttt catgcgggtt
    21421 cggcaccaga cggtcaatca gcgcaatgcc gcccatccct gccaaaaatg ccatggtcgc
    21481 cgccgcaaac gcgtggtctt tatcataaat ttcagcgaac gcctcgctgg acttactgaa
    21541 aatctccgtc agggaaacat acaccatcgc accgccggca aatgccaaac caaacgacaa
    21601 cacgcgcgga ttgggcgttt tggaaaacat caccaagccg ctgcctaata cggtaaacaa
    21661 accggcagcc aacgtaatgg aaaaggcaac ggccaaattg gacatcgaaa aatcgggcat
    21721 gggaaaacct gcgctaaaag ctgggacagg ttcagactaa cactttttaa tgcgtatgat
    21781 aatagttatt atttatttta ttgattggat acccgaattt tgaaacaaaa ggccgtctga
    21841 aaaatgattt tcagacggcc tttaaatttg aaatgtcgct aaaccttatc gctttccagc
    21901 ttaagcctga tagcgcgaca ggctcaaatc gtcgcttcgg atttcggtgt ctttgccgct
    21961 cacgatatcg gcggttaatt ttgccgaacc cagcgacatg gtccagccca aagtgccgtg
    22021 gcctgtattc aagaataagt tttcaaagcg ggtgcggccg attaacggcg tgctgtcggg
    22081 cgtcatcggt ctgaggccgc tccagaacaa tgcttggctc aaatcgccgc cttccgggaa
    22141 caaatcgttg acgaccaaag ccaaggtttc gcggcgtttt tcgggcagtt tgatttcgta
    22201 gcccgacaat tctgccatgc cgccgacgcg gattctgttg tcaaagcgcg tgatagcgac
    22261 tttgtagctt tcatccaaaa cggtggacac cggcgcgccg tctgaattgg tgaccggcag
    22321 ggtcaaggaa tagcctttga cgggataaat cggcagatcg aggtctaact gcgccaacac
    22381 agtcctactg aagcagccga gcgcacagac aacggcatct gcttcaaacc gccctgtttc
    22441 ggtttcaacg gctttgatgc gcagcccgtt atggtcgatg cggctgatgg tttggttgaa
    22501 atgaaactgt acgccctttt cctgacacaa tttgtatagg ttttcagtga agaggtggca
    22561 gtcgccggtc gcatctgcag gcaggtgcag gccgccggca attttggcgg taacgcgtgc
    22621 cagcgcaggc tcaaattctg cacattcttc gggtttcaga cggcggtacg gcacgccgta
    22681 gcgttccaaa acggcaatgt cttgttctgc cgcttcgact tctttggttt ggcggaaaat
    22741 ctgcaacgtc ccttttttgc gttcctcaaa attcatgccg gtttgcgctt caaaacggcg
    22801 gaacatttca cggctatatt cggaaatcct gaccatgcgc tctttattgg tttgatagtg
    22861 cgctgccgtg cagttttgca gcatttgcca cagccattcg atttgataca ggctgccgtc
    22921 ggggcgaaac agcaaaggcg gatggctttt aaacagccat ttcagcgctt tggtcgggat
    22981 accgggtgca gcccaaggcg tggtatagcc gtaagaaagc tggcctgcgt tggcaaaact
    23041 ggtttccatc gccacaccct cggcgcggtc gatgaccgtt acttcatgtc ctgcctctgc
    23101 cagataccac gcggaagaca cgccggcaac acccgcacct aaaacaagca ctttcatgtt
    23161 tctccctccg gctttttcaa aacagactta atatgccgtg ccgtctgaat attcggattc
    23221 agacggcctc ggatattaat gcggcaattc gccgtttgtg attttttgtt tgaagtcgcg
    23281 cgtttcattg acgatgactt tcgccatcaa taaaagtgca atcaggttgg gcaatgccat
    23341 caagccgttg aatgtgtccg aagccagcca caccaaatca aggctcaaca cggtacccag
    23401 cataacggaa gaaacataac cgacgcggta caaaccggca aatttctcgc cgaaaacata
    23461 caccgcgcat ttttcgccgt aatagcacca gccgagaatg gttgagtagg caaagaaaat
    23521 caggccgatg gtgacaatcc agccgccgat gccgggcagc attttttgga atgtgacggt
    23581 tgtcagtgcc gcgccgctca cttcaggttt gacaaactcg ccgcccgcgc cgagcagtcc
    23641 cattaccaac acgatgccgg taatcgagca aacgacgatg gtatccaaaa acgtaccggt
    23701 catagaaacc aaggcctgac ggacgggatg gtcggttttc gcggctgcgg cggcaatagg
    23761 cgcagaaccc atacccgcct cattggagaa cacgccgcgc gccacgccgt agcggatgac
    23821 cgtaccgata gcgccgcccg ccactgcctg cgcgctgaac gcatcggaga aaattagctt
    23881 gacggcaggc atcagtgcat cggaattaat cgcgataatg gaaagaccgc ccaacacata
    23941 aaacaccgcc atagcaggca cgatgaaaga agcggctttg gcgatgcctt taataccacc
    24001 taaaacgaca acggcagtca gaacggtcaa cgtaatgccg gtataggcag gttcgatacc
    24061 gaagctggtt tgcaccgcct gtgcaaccga gttggactgc accgagctgc cgataccgaa
    24121 ggaagcgaat gtgccgaaca gcgcaaatgc aacggccatc catttccagt ttttgcccaa
    24181 gcctttttcg atgtaataca tcgggccgcc ggacatttcg cctttggaat tgttgacgcg
    24241 gtatttcacc gccaacacgc cttcgccgta tttggtggcc atgccgaaaa tggcggtcat
    24301 ccacatccaa aataccgcgc ccgggccgcc ggttaccacc gcagtcgcca cgccggcgat
    24361 gttacccgta ccgatggtgg cggacagcgc ggtcatcaac gccgcaaaat gggaaatatc
    24421 gccttcgtgg ccttcgccgc cttcatactt ctttgacggc acaaacgcct gtttcagcgc
    24481 atagcccaac atagtgaact gtaagccttt cagcataacg gtcagcacaa tgccggtgcc
    24541 gaccagcagc atcaacataa cagatcccca gacccagccg ctgacggttt cgaaaaaggc
    24601 tttgagattg tctaaaaaca attgcatggc tttctccttt gtct
//
LOCUS       DAXHPV010000013        23775 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.013, whole genome shotgun sequence.
ACCESSION   DAXHPV010000013 DAXHPV010000000
VERSION     DAXHPV010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 23775)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23775)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23775
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.013"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(93..932)
                     /locus_tag="ACFM6C_000360"
     CDS             complement(93..932)
                     /locus_tag="ACFM6C_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HFC6157875.1"
                     /translation="MKQLRDNKAQGSALFTLVSGIVIVIAVLYFLIKLAGSGSFGDVD
                     ATTEAATQTRIQPVGQLTMGDGIPVGERQGEQIFGKICIQCHAADSNVPNAPKLEHNG
                     DWAPRIAQGFDTLFQHALNGFNAMPAKGGAADLTDQELKRAITYMANKSGGSFPNPDE
                     AAPADNAASGTASAPADGAAPAEAKAEDKGAAAPAVGVDGKKVFEATCQVCHGGSIPG
                     IPGIGKKDDWAPRIKKGKETLHKHALEGFNAMPAKGGNAGLSDDEVKAAVDYMANQSG
                     AKF"
     gene            1217..1292
                     /locus_tag="ACFM6C_000361"
     tRNA            1217..1292
                     /locus_tag="ACFM6C_000361"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1250..1252,aa:Arg,seq:ccg)
     gene            complement(1357..2550)
                     /locus_tag="ACFM6C_000362"
     CDS             complement(1357..2550)
                     /locus_tag="ACFM6C_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transaminase"
                     /protein_id="HFC6157876.1"
                     /translation="MYRHIEYYPGDPILSLVETFKNDPRPEKVNLSIGIYFDDEGKMP
                     VLESVSRAETARAAAPAPSPYLPMEGLDTYRSAVQHLLFGKDNPALAQGRIVTVQTLG
                     GSGALKVGADFLHRWFPEARAYVSDPTWDNHRGIFEGAGFEVGTYPYYDPATVGVKFD
                     EMTAFFNTLPENSVLILHPCCHNPTGVDMSEQQWDEVLHIIKTRKLIPFMDIAYQGFG
                     GDLDSDAYAVRKAVEMELPLFVSNSFSKNLSLYGERVGGLSVVCPNKEEADLVFGQLK
                     FTVRRIYSSPPAHGAYIAADVMNSPELYALWQNEVYMMRDRIRAMRQKLYDVLTAQIP
                     DRDFTYFIKQRGMFGYTGLSVEQVRRLRDEFAVYLLDSGRMCVAGLNTSNTDYVARAF
                     AEVLK"
     gene            complement(2571..3659)
                     /gene="trmA"
                     /locus_tag="ACFM6C_000363"
     CDS             complement(2571..3659)
                     /gene="trmA"
                     /locus_tag="ACFM6C_000363"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030697 - tRNA
                     (uracil(54)-C5)-methyltransferase activity, S-adenosyl
                     methionine-dependent [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HFC6157877.1"
                     /translation="MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFR
                     IWHEGGEMFYAMFEKGQKASGASLIRCDRFDAASEAVNCLMPELIAVAAQSAELRNRW
                     YAVEFLSTLSGEMLVTMIYHKRLDDEWMQAAQALQQQLDISVIGRSRGQKIVLKQDYV
                     TETLKVGNRDFRYRQIEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTL
                     PLSEKFERVLATEISKTSISAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLK
                     DGGIALTDYAFSTIFVDPPRAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETH
                     AVERAALFDQFPFTHHIESGVLLKKKIL"
     gene            3802..4902
                     /gene="aroC"
                     /locus_tag="ACFM6C_000364"
     CDS             3802..4902
                     /gene="aroC"
                     /locus_tag="ACFM6C_000364"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HFC6157878.1"
                     /translation="MAGNTFGQLFTVTTFGESHGAGLGCIIDGCPPGLELSEADIQFD
                     LDRRKPGTSRHVTQRREADQVEILSGVFEGKTTGTPIALLIRNTDQRSKDYGNIATSF
                     RPGHADYTYWHKYGTRDYRGGGRSSARETAARVAAGAVAKKWLKEKFGTEITAYVTQV
                     GEKEIRFEGCEHISQNPFFAANHSQIAELENYMDGVRKSLDSVGAKLHIEAANVPVGL
                     GEPVFDRLDAEIAYAMMGINAVKGVEIGAGFDSVTQRGSEHGDELTPQGFLSNHSGGI
                     LGGISTGQDICVNIAIKPTSSIATPRRSIDINGNPIELATHGRHDPCVGLRAAPIAEA
                     MLALVLIDHALRHRAQNADVAVDTPDIARSDK"
     gene            4993..5418
                     /locus_tag="ACFM6C_000365"
     CDS             4993..5418
                     /locus_tag="ACFM6C_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ProQ/FINO family protein"
                     /protein_id="HFC6157879.1"
                     /translation="MTQETALGAALKSAVQTMSKKKQTEMIADHIYGKYDVFKRFKPL
                     ALGIDQDLIAALPQYDAALIARVLANHCRRPRYLKALARGGKRFDLNNRFKGEVTPEE
                     QAIAQNHPFVQQALQQQSAQAAAETPSVEAEAAESSAAE"
     gene            complement(5492..7477)
                     /gene="parE"
                     /locus_tag="ACFM6C_000366"
     CDS             complement(5492..7477)
                     /gene="parE"
                     /locus_tag="ACFM6C_000366"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HFC6157880.1"
                     /translation="MAKNNQYSESSITVLKGLEPVKERPGMYTRTDSPTHICQEVIDN
                     AADEALGGFATAIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKF
                     NKKDGGSAYAFSGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVG
                     KCAVKDSGTEVRVWPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEA
                     HTRTWHYPDGLKSYLTDLIADAQEAVPIFSCENYISDEHNGDFSIGEGAAFALTWLEE
                     GSCANESYVNLIPTPLGGTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTA
                     FVLSARVLDPQFQGQTKDKLTNRDALKLVAAVAGDPLELWLNQNVDFGKKIAELAIRQ
                     AQARMRSVKKIEKKKGSGVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKA
                     TQAILPLRGKVLNSFEVHPDQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAI
                     LSDADVDGSHIQVLLLTLFYRHFPKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYA
                     LDQNELDGILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPE
                     GADDETRDIFVKLMGKGEAAARRAWMEREGDTAELDI"
     gene            complement(7544..8092)
                     /locus_tag="ACFM6C_000367"
     CDS             complement(7544..8092)
                     /locus_tag="ACFM6C_000367"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HFC6157881.1"
                     /translation="MNLTEGDTVLDREGYRPNVGIILINNRNEVFWGKRVREHSWQFP
                     QGGIKPGESPETAMYRELYEEVGLLPQHVKIIGRTRDWLRYDVPNNWVRREWRGSYRG
                     QKQIWYLLRLTGRDCDVNLRATRHPEFDGWRWHQYWAPVDEVIDFKRDVYLGALKELS
                     SRFLRGMESYEDFAARQSSDNR"
     gene            8234..9529
                     /gene="serS"
                     /locus_tag="ACFM6C_000368"
     CDS             8234..9529
                     /gene="serS"
                     /locus_tag="ACFM6C_000368"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HFC6157882.1"
                     /translation="MLDIQLLRSNTAAVAERLARRGYDFDTARFDTLEERRKSVQVKT
                     EELQASRNSISKQIGALKGQGKHEEAQAAMNQVAQIKTDLEQAAADLDAVQKELDAWL
                     LSIPNLPHEDVPFGKDETENVEVRKVGTPREFDFEIKDHVDLGEPLGLDFEGGAKLSG
                     ARFTVMRGQIARLHRALAQFMLDTHTLKHGYTEHYTPYIVDDTTLQGTGQLPKFAEDL
                     FHVTRGGDESKTTQYLIPTAEVTLTNTVAGSIIPSEQLPLKLTAHSPCFRSEAGSYGK
                     DTRGLIRQHQFDKVEMVQIVHPEKSYEALEEMVGHAENILKALELPYRVITLCTGDMG
                     FGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRLKARFKDENGKNRLVHTLNGSGL
                     AVGRTLVAVLENHQNADGSINIPAALQPYMGGVAKLEVK"
     gene            complement(9607..10605)
                     /locus_tag="ACFM6C_000369"
     CDS             complement(9607..10605)
                     /locus_tag="ACFM6C_000369"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008720 - D-lactate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0070404 - NADH binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HFC6157883.1"
                     /translation="MKIAIYGTKSYDREHFTRANRHFGFELEFFDFMLDVKTAKMAEG
                     AEAVCIFVNDDGSRPVLEKLAQIGVKTVALRCAGFNNVDLKAAEELGLKVVRVPAYSP
                     ESVAEHTVGLMLTLNRRIHKAYQRTRDANFSLEGLTGFNMYGKTAGVIGTGKIGIATM
                     RILKGFGMNLLAYDPFCNPEAEKIGGKYVDLDELYARSDIITLHCPATPENHYMLNEA
                     AFDKMKDGVMIINTSRGGLIDSAAAIEALKRRKIGALGMDVYENERELFFEDKSNDVI
                     TDDVFRRLSSCHNVLFTGHQAFLTEEALGNISEVTLSNIREVGQTGDCGNAVRADG"
     gene            complement(10730..11806)
                     /gene="prfA"
                     /locus_tag="ACFM6C_000370"
     CDS             complement(10730..11806)
                     /gene="prfA"
                     /locus_tag="ACFM6C_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003790927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HFC6157884.1"
                     /translation="MKPSILEKLQQLGDRLEEVTHLLGQPEATSDMDNYRKLTREHAE
                     LTPVVEVFQNYRLAQSDLADAEEMLSDPEMKDFAAEEIEAAKAKIGALDTELQKLLLP
                     KDADDDKNIFIEVRAGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYK
                     EVIARIIGLGAYSRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELN
                     PADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAA
                     RLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMD
                     GDLAEITDALIAEHQAELLAAMGD"
     gene            complement(11896..12675)
                     /locus_tag="ACFM6C_000371"
     CDS             complement(11896..12675)
                     /locus_tag="ACFM6C_000371"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HFC6157885.1"
                     /translation="MNFTDTHCHLADAALRENLPHILTAAREAGVGRFIVPATRPQDW
                     QDVADLAQRLSENPLWGNIHIALGIHPWFSDDVSEPDFQRLEQALKARPMAWVGEIGL
                     DFYDKTQTPQQRERQIQVFSRQLAIAQTLRRRVIIHNLKASNEIAAAVRQTGFSCGGI
                     VHAFSGSIEEARVLVGLGFKIGIGSLLLNPNARKVRDTLKALNDGDFVLETDSPFMLK
                     NTVNTPANILRIAEIAAQIRGTGAAEIAAITERNADSLLRP"
     gene            complement(12790..13779)
                     /locus_tag="ACFM6C_000372"
     CDS             complement(12790..13779)
                     /locus_tag="ACFM6C_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HFC6157886.1"
                     /translation="MKQKIFVLYTGGTIGMTQSSEGLRPDTALVGQALAPFSNGMDFD
                     WHVCGPLIDSSAVQLQNWCAWLDIIAAALPQYDGVLVLHGTDTLAYTANLFALALQGL
                     DKPIVLTGSQWPYNAVGSDAPRNLATAVAAFPLGLKQTLIAFDGKLYPAVGSSKVSTE
                     TAAGFDNPHFGALAEWDETQGWHNVRIPNQDAADVSDGLKIHYPDPQAKIAVRTLIPG
                     FAVQELADGLGRLSAQALILQSYGHGNTPADEGFIRAVRDFTRQGKLLLNISQVRQGK
                     TAAVYAQGNAFRNSGIINGGKCNLETATALMTLAVSQGWGKEEVEKELARLKL"
     gene            complement(13846..14529)
                     /locus_tag="ACFM6C_000373"
     CDS             complement(13846..14529)
                     /locus_tag="ACFM6C_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HFC6157887.1"
                     /translation="MFALLEAFFVEYGYAAVFFVLVICGFGVPIPEDLTLVTGGVISG
                     MGYTNPHIMFAVGMLGVLAGDGIMFAAGRIWGQKILKFKPIARIMTPKRYAQVQEKFD
                     KYGNWVLFVARFLPGLRTAVFVTAGISRKVSYLRFLIMDGLAALISVPVWIYLGEYGA
                     HNIDWLMAKMHSLQSGIFIALGVLAAALAWFWWRKRRHYQLYRAQLSEKRAKRKAEKA
                     AKKAAQKQQ"
     gene            complement(14717..16051)
                     /gene="glmM"
                     /locus_tag="ACFM6C_000374"
     CDS             complement(14717..16051)
                     /gene="glmM"
                     /locus_tag="ACFM6C_000374"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_function: GO:0016868 - intramolecular
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HFC6157888.1"
                     /translation="MAKKYFGTDGVRGEVGQFPITPDFVLKLGYAAGQVLVQHDTDQK
                     PTVLIGKDTRISGYMLEAALVAGFTAAGVNVVQTGPLPTPGVAYLTRALRLSAGVMIS
                     ASHNAYSDNGIKFFAEGGVKLSDEVELEIEAKIDGEMKTQPSARLGRARRINGADDRY
                     IEFCKSTFPTHSDLRGLKLVVDAANGAAYSVAPKVFHELGAQVVSIGDEPNGYNINEK
                     CGATYTKTLQAAVLQHEADYGIALDGDGDRLMMVDKNGKVYDGDSLIYVIAKARAREG
                     INIGGVVGTVMTNMAMEIALKEQGVDFCRAKVGDRYVLEQLNQRGWLIGGEASGHILC
                     MDKHNTGDGIISALQVLAALQTLNQDLATVCADWQPYPQTMINVRIGKGQNWQEASKD
                     VLAEVEKELEGKGRVVLRASGTEPVVRVMVEARQADWARDGAERIAAAIGSL"
     gene            complement(16181..17032)
                     /gene="folP"
                     /locus_tag="ACFM6C_000375"
     CDS             complement(16181..17032)
                     /gene="folP"
                     /locus_tag="ACFM6C_000375"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003677763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HFC6157889.1"
                     /translation="MARHVWQAGRFEIGLDKPKIMGIVNLTPDSFSDGGAYSQNAQTA
                     LAHAERLLKEGADILDIGGESTRPGADYVSPEEEWARVEPVLAEVAGWGVPVSLDTRR
                     TVVMEKALALGGIDIINDVAALTDEGAVELLARQTDTGICLMHMRGLPENMQINPKYQ
                     DVVGEVARYLKARAAECIAAGIAPQRITLDPGFGFGKNLQHNIALMRHLPELMAETGF
                     PLLIGVSRKRMVGELTGETDAAARVHGSVAAALASVARGAQIVRVHDVKATADALKVW
                     EALGINL"
     gene            complement(17172..18065)
                     /locus_tag="ACFM6C_000376"
     CDS             complement(17172..18065)
                     /locus_tag="ACFM6C_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HFC6157890.1"
                     /translation="MIIVMSRRAAEADIAGVVAFIRSRGLREHISHGDERTVIGAIGD
                     DRVLSVREVQTLPEVEKAVRILDTWKTVSRENRAEDSRVAAKGVAFGGGETVRIAAEP
                     SVWRNADAVFLDPFFTSANLYDTSSADEGRGRCRRLAEQTASAHGAGKPVLVRVRNVR
                     HVEAALNAGADILYLGGGLMSDLAVLNEAGNLNIPLVLCKDKHHSAEDWLNAAEYVVS
                     RGNRHLILGESGVLSHTKDHPYRLDVESIVKVRQISHLPVIANITGLWNRDMPQEILY
                     GLAKAAGACGIVGTCFEKSGG"
     gene            18156..20270
                     /locus_tag="ACFM6C_000377"
     CDS             18156..20270
                     /locus_tag="ACFM6C_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HFC6157891.1"
                     /translation="MDLLSVFHKYRLKYAVAVLTILLLAAVGLHASVYRTFTPENIRS
                     RLQQSIAHTHRKISFDADIQRRLLPRPTVILKNLTITEPGGDRTAVSVQETKIGLSWK
                     NLWSDQIQIEKWVVSSAELALTRDGKGVWNIQDLIDSQKRQASVNRIIVENSTVRLNF
                     LQEQLILKEINLNLQSPDSSGQPFESSGILVWGKLSVPWKSRGLFLSNGIGPPEISPF
                     HFEASTSLDGHGITISTTGSPSVRFNAGGADAAGLGLRADTSFRNLHLTAQIPTLALR
                     NNSIKIETVNGAFTAGGEYAQWDGSFKLDKANLHSGIANIGNAEISGSFKTPRHQTNF
                     SLNSPLVWTENKGLDAPRLYVSTLQDTVNRLPQPRFISRLDGSLSVPNLQNWNAELNG
                     TFDRQTVAAKFRYTHEDAPHLEAAVALQKLNLTPYLDDVRQQNGKIFPDTLAKLSGDI
                     EAHLKIGKVQLPGLQLDDMETYLHADKDHIALSRFKSGLYGGHTEGGISIANTRPATY
                     RLQQNASNIQIQPLLQDLFGFHSFSGNGDAVIDLTAGGETRKELIRSLQGSLSLNISN
                     GAWHGIDMDNILKNGISGKTADNAAPSTPFHRFTLNSEISDGISRHIDTELFSDSLYV
                     TSNGYTNLDTQELSEDVLIRNAVHPKNKPIPLKITGTVDKPSITVDYGRLTGGINSRK
                     EKQKILEDTLLEQWQWLKPKEP"
     gene            complement(20335..21813)
                     /gene="ubiD"
                     /locus_tag="ACFM6C_000378"
     CDS             complement(20335..21813)
                     /gene="ubiD"
                     /locus_tag="ACFM6C_000378"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HFC6157892.1"
                     /translation="MKYKDLRDFIAMLEQQGKLKRVAHPVSPHLEMTEIADRVLRAEG
                     PALLFENPVKPDGTRYDYPVLANLFGTPERVAMGMGADSVSKLREIGQTLAYLKEPEP
                     PKGIKDAFSKLPLLKDIWSMVPNVVKNAPCQEIVWEGEDVDLYQLPIQHCWPEDVAPL
                     VTWGLTVTRGPHKKRQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEFHKLNPDTPYP
                     VAVVLGCDPATILGAVTPVPDTLSEYQFAGLLRGSRTELVKCIGNDLQVPARAEIVLE
                     GVIHPNETALEGPYGDHTGYYNEQDHFPMFTVERITMRENPIYHSTYTGKPPDEPAVL
                     GVALNEVFVPLLQKQFPEITDFYLPPEGCSYRMAVVSMKKQYAGHAKRVMMGCWSFLR
                     QFMYTKFIIVVDDDVNVRDWKEVIWAVTTRMDPVRDTVLVENTPIDYLDFASPVSGLG
                     GKMGLDATNKWPGETDREWGRVIKKDPAVTAKIDGIWEELGL"
     gene            complement(21833..22348)
                     /locus_tag="ACFM6C_000379"
     CDS             complement(21833..22348)
                     /locus_tag="ACFM6C_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2199 domain-containing protein"
                     /protein_id="HFC6157893.1"
                     /translation="MYTCTSCGEKHEDMPAIGFTAPDPYNQLSEEERIAYQAECDSDF
                     CIIRYPDQTDRFIRAVLPIPIIGHEETLEYGVWVSVSEKSFNDYQSRFYDNLENAVYF
                     GMICNQLPPYETDTFGLHCNVVTQPDGQRPLLQLHQGGEHPLVRDFYHGIEYAEAQAR
                     IGAVSELDCSG"
     gene            complement(22355..22789)
                     /locus_tag="ACFM6C_000380"
     CDS             complement(22355..22789)
                     /locus_tag="ACFM6C_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003790506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157894.1"
                     /translation="MCGLWLLRALTAKLPQQRYAALFITLFFAAVLVFGRHDSMYWYP
                     VLVNLMMLAVFGGSLFAGQTVIEKLARLQQPDLPEKAVRYTRRVTQVWCVFFIINGTL
                     TALLARLGRYDWWAVYTGVIAYVLMGMLFAGEWLYRKLVLKV"
     gene            complement(23070..23153)
                     /locus_tag="ACFM6C_000381"
                     /pseudo
     CDS             complement(23070..23153)
                     /locus_tag="ACFM6C_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222119.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
     gene            complement(23156..23656)
                     /locus_tag="ACFM6C_000382"
                     /pseudo
     CDS             complement(23156..23656)
                     /locus_tag="ACFM6C_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714696.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase chain length factor"
     gene            23696..>23775
                     /locus_tag="ACFM6C_000383"
     CDS             23696..>23775
                     /locus_tag="ACFM6C_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6157895.1"
                     /translation="MLPSKYEDNTLQIKEKSTERTAPFFVL"
BASE COUNT         5377 a         6781 c         6233 g         5384 t
ORIGIN      
        1 tcctgatttt tgttaattca ctataaattc ccataaaaaa acggagcaga tacctgcccc
       61 gtttttattt aatccgaaat tttaatctaa atttaaaatt ttgcaccgga ttggtttgcc
      121 atatagtcaa cagccgcttt gacttcgtca tcgctcaaac cggcattgcc gcctttggcc
      181 ggcatcgcgt taaagccttc aagggcgtgt ttgtgcaagg tttctttgcc ttttttgata
      241 cgcggtgccc aatcgtcttt tttgcctatg ccgggaatac cgggaatcga accgccgtgg
      301 cacacctgac aggttgcttc gaagactttt ttaccgtcaa cgccgaccgc aggggctgcc
      361 gcacccttgt cttctgcctt cgcttctgcc ggagctgcac catcggcagg agcagaagct
      421 gttcctgaag cggcattgtc ggcaggcgca gcctcatcag gattcgggaa agaaccgccg
      481 cttttgttcg ccatgtaagt aatcgcccgt ttgagttcct gatcggtcag gtctgccgca
      541 ccgcctttgg caggcatggc gttaaagccg ttcagcgcgt gttggaacaa ggtatcgaag
      601 ccttgcgcga tacgcggtgc ccaatcgccg ttgtgttcca gtttcggagc gttcggcaca
      661 ttgctgtccg ccgcgtggca ttggatacag attttgccga aaatctgttc gccttggcgt
      721 tcgccgacgg ggatgccgtc gcccatcgtc aattgtccga caggctggat acgggtctgc
      781 gttgctgctt ccgtagtggc atcgacatcg ccgaacgagc cgctgcccgc cagcttaatc
      841 aggaaataaa ggactgcaat aacaataacg ataccgctca caagggtaaa cagtgcagag
      901 ccttgggctt tgttgtcgcg gagttgtttc atttggtagg cctcgccgtc aggttaggtt
      961 gtgctgtaaa ttatagtttg gtgtgttaaa cgcagttaac aatattttgc tggattatac
     1021 tgaattcaca gggtctttcc aatcgctatc attgaaaata tgaaaaaatt tgccaacggt
     1081 atctgtataa aacaaataat cctttgaaaa taatggttta tcctcaagaa aactctcctt
     1141 atgccgccat acgccgcctg ccggcgcaag ataacctttg ccaatttgca gaatttacgt
     1201 taaccttacg ttttacgcac ccatagctca gttggaagag tgtcagtttc cgaagctgga
     1261 ggtcacaggt tcgatccctg ttgggtgcgc caattataaa gaggccgtct gaaagataaa
     1321 tatttttcag acggtctttt gacttacttc aaactcttat ttcaagactt ccgcaaatgc
     1381 gcgggcaaca tagtcggtat tcgacgtatt cagtccggcg acgcacatcc tgccggaatc
     1441 cagcaggtaa acggcaaatt cgtcgcgcag cctgcggact tgttccacgc tcaatcctgt
     1501 gtagccgaac atgccgcgct gtttgatgaa ataagtgaaa tcgcgatcgg ggatttgcgc
     1561 agttaagaca tcataaagtt tctgccgcat cgcacggatg cggtcgcgca tcatataaac
     1621 ctcgttttgc cacaaggcgt aaagttcggg gctgttcatc acgtcggcgg cgatatacgc
     1681 gccgtgcgcg ggcgggctgg agtagatgcg gcggacggtg aatttgagct gtccgaacac
     1741 caaatccgct tcttccttat tcgggcaaac cacgcttaag ccgccgacgc gctcgccgta
     1801 gagcgacagg ttttttgaga aggaattgct gacgaacaag ggcaattcca tttccaccgc
     1861 tttgcggacg gcgtaggcat cgctgtccaa atcgccgccg aagccttggt aggcaatgtc
     1921 cataaacgga atcagtttgc gcgttttgat gatgtgcaac acttcgtccc attgttgttc
     1981 cgacatatcc acgccggtcg ggttgtggca gcagggatgg aggatcagga cgctgttttc
     2041 gggcagggtg ttgaaaaacg cggtcatttc gtcgaatttc acgccaacag tggcagggtc
     2101 gtaatatggg taagtgccga cctcgaaacc tgcgccttca aaaatgccgc gatggttgtc
     2161 ccaagtcggg tcgctgacgt aggcgcgcgc ttcgggaaac cagcggtgca ggaagtccgc
     2221 cccgactttg agtgcgcccg agccgcccaa ggtttgtacg gtaacgatgc gcccttgcgc
     2281 aagcgcggga ttgtctttgc cgaacaacaa atgctgcacc gcgctgcggt aagtgtccaa
     2341 gccttccatc ggcaggtagg gcgacggcgc aggcgcggcg gcacgggcag tttcggcgcg
     2401 gctcacggat tccaacacgg gcattttgcc ttcgtcgtcg aaataaatgc ctatgctcaa
     2461 attgactttt tcggggcgcg ggtcgttttt gaaggtttcg accaaactca aaatcgggtc
     2521 gccgggatag tattcgatgt gtcggtacat agtccttacc ttttactttt tcaaaggatt
     2581 ttctttttca acaatacacc actttcgata tggtgcgtaa acgggaattg gtcgaacagg
     2641 gcggcgcgtt cgaccgcatg ggtttccacc aaggtgtcca aattggcacg cagcgtttcg
     2701 ggattgcagg aaatgtagat gatgttgtca aactgcgaca ccagcttcaa agtttcctca
     2761 tcgataccgg cacgcggcgg atcgacgaaa atagtggaaa atgcgtaatc cgtcaaagca
     2821 ataccgccat ccttaaggcg tttaaactca cgttttccgg tataggcttc ggtaaattct
     2881 tcagcagaca gacgggcgat tttgatgttg ccgatgcggt tggcttcgat attccattgc
     2941 gccgcgctga tggaggtttt ggagatttcg gttgccaaaa cacgttcaaa cttttcagat
     3001 aaaggaagcg taaagttgcc gtttccgcaa tacagttcga gcaaatcccc atccaatcct
     3061 tctgctgcac cgcaggccca ttcaagcatt ttctgacaca cggcggcatt cggttgggta
     3121 aaactgcctt caatttgccg ataacggaaa tcccggttgc cgaccttcaa agtttccgtt
     3181 acatagtcct gttttaagac tattttctgt cccctgctcc gcccaataac ggaaatatcc
     3241 aactgttgct gtaacgcttg cgccgcctgc atccactcat catcaagcct tttgtggtaa
     3301 atcatggtaa ccagcatttc cccgctgagc gtagacaaaa attcgacggc ataccaacgg
     3361 tttctcagtt cggcagattg ggcggcaacg gcaattaatt cgggcatcag gcagttgact
     3421 gcctctgaag cagcatcgaa gcggtcgcaa cggatcaggc ttgcgccgct ggctttctgc
     3481 cctttttcaa acatggcata aaacatttcc ccgccttcgt gccaaatacg gaactcggca
     3541 cgcatacggt agtgtttgtc cggagattcg tacacttccc actcaggaac atccaaacct
     3601 gcaaaaaggg ttttaaggtg gtctttttta tcttgaagct gctgcgtgta gtcgctcata
     3661 tcgctatcct gaaaaatcag accggattat aagccgattc actgcaaaac acgcaacccc
     3721 tttaccggca tataacccgt tttcctccaa cttttatgct aaaatccgcc gtctccaaca
     3781 taccgccgac agaaggaaaa tatggcaggc aacactttcg gacaactctt caccgtgacc
     3841 acgttcggcg aaagccacgg cgcaggtttg ggctgcatca tcgacggctg cccgcccggc
     3901 ttggaattaa gcgaagcgga tatccaattt gacctcgacc ggcgcaaacc cggcaccagc
     3961 cgccacgtta cccaacgccg cgaagccgac caagtcgaaa tcctctccgg cgtattcgaa
     4021 ggcaaaacca ccggcacacc catcgccctc ttaatccgca ataccgacca gcgcagcaaa
     4081 gactatggca acatcgccac cagcttccgc cccggccacg ccgactatac ctattggcac
     4141 aaatacggca cgcgcgacta ccggggcggc ggcaggagtt ccgcccgcga aaccgccgcc
     4201 cgcgttgctg ccggagccgt tgccaaaaaa tggttgaaag aaaaattcgg cacggaaatc
     4261 accgcctacg ttacccaagt cggcgaaaaa gaaatccggt ttgaaggctg cgaacacatt
     4321 tcccaaaatc ctttttttgc cgccaaccat agccaaattg ccgagctgga aaactatatg
     4381 gacggcgtgc gcaaatcctt ggattccgtc ggcgcgaagc tgcatattga agccgccaat
     4441 gtccctgtcg gcttgggcga acctgttttt gaccgcctcg atgccgaaat cgcctacgcg
     4501 atgatgggca tcaacgccgt caaaggcgtg gaaatcggcg caggttttga cagcgtaacg
     4561 caacgcggca gcgaacacgg cgacgaactg accccgcaag gcttcctgtc caaccattcg
     4621 ggcggcatcc tcggcggcat cagcaccggg caagacatct gcgtcaatat cgccatcaaa
     4681 cccaccagct ccatcgccac cccgcgccgc agtatcgaca tcaacggcaa ccccatcgaa
     4741 ctcgccacgc acggcaggca cgacccctgc gtcggcttgc gcgccgcgcc gattgccgaa
     4801 gctatgctcg ccttggtttt aatcgaccac gccctgcgcc atcgtgcgca aaatgcggat
     4861 gttgccgtgg atacgcccga tatcgcccgc tcggacaagt aaaaagattt agccaaaaca
     4921 cgggctttat actaaaatac cgaccattgc cgtgccgtct gaacgcacga ttcttagagg
     4981 aatacaaccg aaatgacaca agaaaccgct ttgggtgcgg cactgaaatc cgccgtccaa
     5041 actatgagca aaaagaaaca gaccgaaatg atcgccgacc acatctacgg caaatacgat
     5101 gtgttcaaac gcttcaaacc gttggcactc ggcatcgatc aggatttgat tgccgctttg
     5161 ccgcaatacg atgccgcact gattgcacgc gtcctcgcca accactgccg ccgtccgcgc
     5221 tatctgaaag ccttggcgcg cggcggcaaa cgtttcgatt tgaacaaccg tttcaaaggc
     5281 gaagttaccc ccgaagaaca ggcgatcgcg caaaaccatc ctttcgtgca gcaggctttg
     5341 caacagcagt ccgcccaagc tgccgccgaa acgccgtctg ttgaagccga agcagcagaa
     5401 tcttccgcag cagaataaat ccccaaatga aatgccgtct gaaaaccgat ttggtttcag
     5461 acggcatttt tccgtatgcg gcaatcacgg ttcaaatatc gagttccgcc gtatcgcctt
     5521 cgcgctccat ccaggcacgg cgggcggcgg cttcgccttt gcccatcagt ttgacgaaga
     5581 tgtcgcgcgt ctcgtcatcc gcgccttcgg ggatttgtac ctgcaacagg cggcgggtgt
     5641 cggggtgcat ggtagtatct ttgagctggt ctgggttcat ctcacccaaa cctttgaaac
     5701 ggctgatgga ataagcagtt tctttaacgc cttctttttg cagccgctct aaaatgccgt
     5761 caagttcgtt ttggtcgagg gcgtagaatt tgcgggcggg tttgctttta ccttgtgcgt
     5821 tgacatctac gcggaacagc ggcggctggg cgacgtagat gtgtccgtca gcgaccagtt
     5881 tcgggaagtg gcggtagaac agggtcagca gcaaaacttg aatatgcgag ccgtccacgt
     5941 cggcatcgga caggatggcg attttgccgt aacgcaggcc gcttaaatcg ggatggtcgt
     6001 tgatgccgtg cggatcgacg ccgatggcaa ctgaaatgtc gtggatttcg gcgttgccga
     6061 agagctggtc ggggtggact tcaaagctgt tgagcacttt gccgcgcagg ggcaggatgg
     6121 cctgggtggc tttgtcgcgg gcgagtttgg ctgagccgcc ggcggaatcg ccttcgacaa
     6181 ggaagagttc gttttcgcgg atgtcttcgc tttcgcagtc ggtcagcttg ccgggcagga
     6241 cggcgacgcc gctgcctttt ttcttttcga ttttcttaac cgaacgcatc cgcgcctgcg
     6301 cctgacggat ggcgagttcg gcaatttttt taccgaagtc cacgttttgg ttcagccaca
     6361 attccaaagg gtcgcccgct acagcggcga caagtttcag cgcgtcgcgg ttggtcagct
     6421 tgtctttggt ctgaccttgg aactgcgggt cgaggacacg ggcagagagg acaaaggcgg
     6481 ttttgccgaa cacgtcgtcg ctttgtactt tcacgccgcg cggcaagagg ttgtgcagat
     6541 tgatgaaatt gttgacggcg ttgaacacgg cttgtttcaa gcctgcttca tgcgtgccgc
     6601 ccaaaggggt gggaatcagg ttgacgtagc tttcgttggc acacgagcct tcttccagcc
     6661 aagtcagggc aaacgccgct ccttcgccga tgctgaaatc gccgttgtgt tcgtctgaaa
     6721 tgtagttttc gcaagagaag ataggcacgg cttcctgcgc gtcggcaatc aggtcggtca
     6781 gatagctttt caggccgtcg gggtagtgcc aagttcgggt atgcgcttcg tcttcgcctt
     6841 tgaccggacg ggtcagggaa acgcgcacac ccggcagcag cacggctttg gcacgcagca
     6901 ggcgttcgag ttcgggaatg ctgtaattcg ggctttcaaa atatttgccg tccggccaca
     6961 cgcgcacttc ggtgccgctg tctttgacgg cgcatttgcc cacttgtgcc aacggttcga
     7021 ccacgtcgcc gccggcaaac acgatacggt ggattttgcc ttcgcgtttg accgttacct
     7081 caaggcgggt ggaaagggcg ttggtcacgg atacgcccac gccgtgcagg ccgcctgaaa
     7141 aggcatacgc gctgccgccg tcttttttat tgaacttgcc gcctgcgtgc agacgagtga
     7201 acacgagttc gaccacgggt acgccttctt cagggtgcag gccgacggga ataccgcggc
     7261 cgttgtcgcg tacggaaagc gaaccgtctt catgaatttg cacgtcgatt gccgtagcga
     7321 aaccgcccaa cgcctcgtcc gccgcgttgt cgatgacttc ttggcagata tgggtcgggc
     7381 tgtcggtgcg ggtgtacata ccgggacgtt ctttgaccgg ctccaagcct ttgaggacgg
     7441 tgatgctgga ttcgctgtat tggttgtttt tagccatagg aataatctga aagtaagaaa
     7501 aacaacgctt tcagacggcc tgaaagcgtt gcgttccgtt gttttagcgg ttgtcggaag
     7561 attggcgggc ggcaaagtct tcataacttt ccataccgcg caggaagcgg gaagagagtt
     7621 ctttcaacgc ccccaaataa acgtcgcgtt tgaaatcaat cacttcgtca acgggcgccc
     7681 aatattgatg ccaacgccag ccgtcaaatt cggggtggcg ggtggcgcgc aggttgacat
     7741 cgcaatctcg gccggtcagg cgcaggagat accaaatctg cttctgtccg cgataagagc
     7801 cgcgccattc gcggcgtacc cagttgttcg gcacgtcata acgcagccag tcgcgcgtgc
     7861 ggccgataat tttgacgtgt tgcggcaaaa gcccgacttc ttcgtacaac tcgcggtaca
     7921 tggcggtttc ggggctttcg cccggcttga tgccgccttg cggaaactgc caagaatgtt
     7981 cgcgcacgcg cttaccccaa aagacttcgt tgcggttgtt gattaagatg ataccgacat
     8041 tggggcgata gccttccctg tccaacacgg tgtcgccctc cgttaaattc aatcttggga
     8101 ttttcccaca aatcaggcgg ttttgacaaa tcagacggca tggcggtacg cgtgccgaaa
     8161 cacgggggga tttgggaaaa tatcttaaat ttggtttaca ataatgtatt tcaaattatt
     8221 cgggaatcag accatgttag atatccaatt gctccgcagc aacaccgccg ccgttgccga
     8281 acggcttgca cggcgcggtt atgactttga taccgcacgt tttgacacac tggaagaacg
     8341 acgcaagtcc gttcaggtga aaaccgaaga attacaggcc tcgcgcaaca gcatttccaa
     8401 acaaatcggc gcactgaaag gtcagggcaa acacgaagaa gcgcaggcgg ccatgaatca
     8461 ggttgcccaa atcaaaaccg atttggaaca ggctgccgcc gatttggatg ccgttcaaaa
     8521 agaattggac gcatggttgt tgagcatacc caacctgcca catgaggacg tgcctttcgg
     8581 taaggatgaa accgaaaacg tcgaagtccg caaagtcggc acgccacgcg aatttgactt
     8641 tgaaatcaaa gaccatgtcg atttgggcga acctttgggt ttggatttcg aaggtggcgc
     8701 gaaactttcc ggcgcacgat ttaccgtgat gcgcggacaa atcgcccgcc tgcaccgcgc
     8761 gctggcgcaa ttcatgctcg atacgcacac gctgaaacac ggctacaccg agcattacac
     8821 gccttatatc gttgacgata cgacgctgca aggcacgggt cagctgccga agtttgcaga
     8881 agatttgttc cacgttaccc gtggcggcga cgagagcaaa accacgcaat atctgattcc
     8941 gacagctgaa gttaccctga ccaataccgt tgccggcagc attatcccgt ccgaacaact
     9001 gccgctgaag ctgaccgcgc attcgccctg tttccgcagc gaggcgggtt cgtacggcaa
     9061 agacacgcgc ggtctgattc gccagcacca gttcgacaaa gtggaaatgg tgcaaatcgt
     9121 tcatcctgaa aaatcatacg aagcgctgga agaaatggtc ggccatgccg aaaacatcct
     9181 gaaggctttg gaactgccct accgcgtgat taccctgtgt accggcgaca tgggcttcgg
     9241 cgcaaccaaa acgtatgatt tggaagtttg ggtaccggcg caaaatacct accgcgaaat
     9301 ctcaagctgt tccaactgcg aagatttcca agcccgccgc ctgaaggcgc gtttcaaaga
     9361 cgaaaacggc aaaaaccgct tggtacatac tttgaacggc tccggcttgg ctgtcggcag
     9421 aacgctggtc gccgtattgg aaaaccatca aaacgccgac ggcagcatca acatccctgc
     9481 cgcactgcaa ccgtatatgg gcggtgttgc caagttggaa gtcaaataag tttgcaggct
     9541 gcctgaacgt caaatgccgt ctgaaacctg tttcagacgg catttccttt aaacttttaa
     9601 aacacgtcag ccgtcggcac gaaccgcatt gccgcaatcg ccggtctgtc cgacctcgcg
     9661 gatattggac agcgtaactt ccgaaatatt acccaacgcc tcttccgtca aaaatgcctg
     9721 atggccggta aacagcacat tatgacaaga cgacaggcgg cggaacacgt cgtcggtaat
     9781 cacatcgttg gatttgtctt caaaaaacag ctcgcgctcg ttctcgtaca catccatgcc
     9841 caatgcgccg attttccggc gtttcaacgc ctcaatcgcg gcggcactgt caatcagccc
     9901 gccccggctg gtgttgataa tcatcacgcc gtctttcatt ttgtcgaacg ccgcttcgtt
     9961 cagcatatag tggttttccg gcgtggcggg gcaatgcagc gtgatgatgt ccgaccgggc
    10021 atacagctcg tctaaatcca catatttgcc gccgattttt tccgcttcgg ggttgcaaaa
    10081 cggatcgtaa gccagcaggt tcatgccgaa accctttaaa atccgcatgg ttgcaatacc
    10141 gattttcccc gtgccgataa cgcccgccgt tttgccgtac atattgaaac cggtcagacc
    10201 ttccagcgaa aaattcgcat cgcgggtacg ctgataggct ttgtggatac ggcggttcaa
    10261 cgtcagcatc agaccgaccg tatgttccgc aaccgattcg ggcgaatagg caggcacgcg
    10321 cacaactttc aagcccaact cttcagccgc ctttaaatcc acattattga agccggcaca
    10381 acgcaacgcc acagttttca cgccaatttg cgccaatttt tccaacacgg gccggctgcc
    10441 gtcgtcgttt acaaaaatac agaccgcctc cgcaccttcc gccattttcg ccgttttcac
    10501 atccagcata aaatcaaaaa actccagctc gaagccgaaa tgccggttgg cgcgggtaaa
    10561 atgttcgcgg tcataacttt tcgtaccgta aatcgcaatc ttcatcaata tgtccagttg
    10621 tcgcctatgg ttgagaaacg gcataataca ctgaattcaa acaaatcagt agaatatggc
    10681 agattaaaat tgattgcatg cacggcattt ccatttcaaa acacaaaact caatcgccca
    10741 ttgccgccag aagctccgcc tgatgctcgg caatcagggc atcggtgatt tctgccaaat
    10801 cgccgtccat cacaaaatcc agcttgtgca gggtgaggtt gatgcggtgg tctgttaccc
    10861 tgccttgggg atagttgtag gtgcggatgc gttcgctgcg gtcgccgctg ccgatgaggg
    10921 atttgcgttc ggcggcttct ttggcttggg cttcgcgttt ttgcgcgtcg ttcaggcggg
    10981 cggcgaggac tttcattgcc tgcgctttgt tggcgtgttg gctgcggccg tcttggcatt
    11041 cgaccaccat accggtgggc aggtgggtga tgcggacggc ggaatcagtt ttgttgatgt
    11101 gctgaccgcc cgcaccggat gcgcggaagg tgtcgatgcg cagatcggcg gggttcaact
    11161 cgatgtcttc cagttcgtcc gcttcgggca tgacggcaac ggtgcaggcg gaggtgtgga
    11221 tgcggccttg gctttcggtg gcggggacgc gctgcacgcg gtgtccgccc gattcaaatt
    11281 tcaaacggct gtacgcgcct aagccgataa tacgggcgat aacttcttta tagccgccca
    11341 actcgctttc gttggcggac acgatttcaa cctgccagcg gttgcgttcg gcgtagcggc
    11401 tgtacatacg cagcaaatcg ccggcaaaca gcgcggcttc gtcgccgccg gtaccggcgc
    11461 gtacttcgat aaagatgttt ttgtcgtcgt cggcatcttt gggcagcagc aatttttgca
    11521 gttcggtatc gagcgcaccg attttggctt tcgccgcttc gatttcttcg gcggcaaagt
    11581 ctttcatttc ggggtcggac aacatttctt cggcatccgc caagtcgctt tgggcaagcc
    11641 gatagttttg gaacacttcg acgacggggg tcagttcagc gtgttcgcgc gtgagcttgc
    11701 ggtagttgtc catatcggac gtggcttcgg gttgccctaa aaggtgggta acttcttcca
    11761 accggtcgcc gagttgttgc agtttttcta agatagacgg cttcataatt cttccataac
    11821 aaacgccgcc tgaagttcag acggcattaa aacgcggtca ttataatata ttttctgaat
    11881 attcaaaaag ataatctagg gacggagcag gctgtcggca ttgcgttccg ttatcgcggc
    11941 gatttccgcc gcgccggtac cgcgtatctg cgcggcaatt tcggcaatcc gaagaatatt
    12001 ggcaggcgta ttgacggtgt ttttcaacat gaacgggcta tccgtttcca atacgaaatc
    12061 cccgtcgttc aaggctttaa gcgtatcgcg cactttacgc gcgttcgggt tgagcagcag
    12121 cgaaccgata ccgattttga aaccgagccc gaccaacacc cgcgcttctt caatgctgcc
    12181 ggaaaaggcg tggacgatgc cgccacagga aaaacctgtc tgtctgacgg cggcggcaat
    12241 ctcgttcgag gctttcaggt tatggataat cacgcggcgg cgcagggttt gcgcgatggc
    12301 aagctggcgg ctgaaaactt ggatttgccg ttcgcgctgc tgcggcgttt gggttttatc
    12361 gtaaaaatcc aagccgattt cgccgaccca tgccatcgga cgcgctttca atgcttgttc
    12421 caaacgctgg aaatccggtt cggaaacgtc gtctgaaaac caaggatgga tgccgagcgc
    12481 gatatggata ttgccccaaa gcggattttc agacaacctt tgagccaaat ccgccacgtc
    12541 ctgccaatcc tgcggccgag tcgcgggaac gataaaccgc cctacccctg cctcccgcgc
    12601 ggcggtcagg atgtgcggca ggttttcgcg cagggcggca tcggcaaggt ggcagtgggt
    12661 gtcggtgaag ttcatttcga ttccgcaatg cggcaggttc acataaaaat aaggcagggc
    12721 ggcaagggat gccgtgtacg ggcggcgcat aaggcgcggt caacgccccg tcattgccat
    12781 ttcaatccgc tataacttca gtcttgccaa ctctttttcc acctcttcct taccccagcc
    12841 ttgcgatacg gcgagggtca tgagtgcggt ggcggtttcg aggttgcatt tgccgccgtt
    12901 gatgatgccc gagttgcgga acgcattgcc ttgcgcgtaa acggcggcgg ttttgccttg
    12961 tcggacttgg ctgatgttga gcaacaattt tccttgccgc gtgaagtctc ggacagcgcg
    13021 gataaagcct tcgtctgcgg gggtgttgcc gtgtccgtag ctttgcagga taagggcttg
    13081 ggcggaaagc cgtccgagtc cgtccgcaag ttcttggacg gcaaagccag ggataagcgt
    13141 gcggacggcg attttcgcct gcgggtcggg ataatggatt ttgaggccgt ctgaaacatc
    13201 tgccgcgtcc tgattcggga tgcggacatt gtgccagccc tgggtttcgt cccactccgc
    13261 cagtgcgccg aaatgcggat tgtcgaaacc ggcggcggtt tcggtgctga ctttgctgct
    13321 gccgacggcg ggatacagtt tgccgtcaaa ggcaataagc gtctgcttca atccgagtgg
    13381 gaatgcggca acggcagtcg ccagattgcg cggcgcgtcg ctgcccacgg cgttgtacgg
    13441 ccattgggag ccggtcagga cgattggctt gtccaaaccc tgcagggcga gggcgaacag
    13501 attggcggta taggcgagcg tgtccgtgcc gtgcagcacc aaaacgccgt cgtactgcgg
    13561 cagcgcggcg gcaatgatgt ccagccaagc gcaccagttt tgcagttgga cggcggaaga
    13621 atcaatcagc ggcccacaaa cgtgccaatc gaaatccatg ccgtttgaaa acggcgcgag
    13681 tgcctgcccg accagcgcgg tatcggggcg caggccttcg ctgctttgcg tcatgccgat
    13741 ggtgccgccg gtataaagga caaaaatttt ctgtttcatg gctcatcctg aaaatgcaaa
    13801 gaccgcctga aacgcgaaat gcgtccggac ggtcgaaaat ctgatttact gctgcttctg
    13861 tgccgctttt ttcgctgcct tttccgcctt gcgtttggcg cgtttttcgc tcaattgtgc
    13921 gcggtaaagc tgataatgtc ggcgtttgcg ccaccagaac caagccagcg ccgccgccag
    13981 cacgcccaat gcgatgaaga tgccggattg caggctgtgc attttcgcca tcagccaatc
    14041 gatgttgtgc gcgccgtact cgcccaagta aatccaaacg ggcacggaaa tcagcgcggc
    14101 aagcccgtcc ataatcagaa agcgcagata cgatactttg cggctgatgc cggcggtaac
    14161 gaaaacggca gtccgcaaac cgggcaggaa acgagcgaca aataacaccc agttgccgta
    14221 tttgtcgaat ttttcctgaa cctgtgcgta acgtttcggc gtcatgatgc gcgcaatcgg
    14281 tttgaacttg aggattttct gcccccaaat tcgtccggcg gcgaacatga tgccgtcgcc
    14341 cgccaacacg ccgagcatgc cgactgcaaa cataatatgc ggattggtat aacccatacc
    14401 cgaaatcacg ccgcctgtta ccaaggtcaa atcctcggga atcggcacgc cgaaaccgca
    14461 gatgaccaaa acgaaaaaca cggccgcgta gccgtattcg acaaaaaagg cttccaaaag
    14521 ggcaaacata gcggatattc cattgtcgga gataaaaagt cagaacaagc cgaaacattt
    14581 tctgcgcgaa acggcattct atcaaagatt atgccgtctg aaagcggcag ggggcagatt
    14641 cgcgcccccg ccggacgttc agacggcatt taaacaggaa aaccgccgct gttgaaacgg
    14701 ttttgcctga ttttgcctaa aggctgccga tggcggcggc aatgcgttcc gcaccatcgc
    14761 gcgcccaatc cgcctgccgc gcctccacca tcacacgcac gacgggttcg gttcccgaag
    14821 cgcgcaacac gacacgccct ttgccttcga gttctttttc cacttccgcc aacacgtctt
    14881 ttgaggcttc ctgccagttt tgccctttgc cgatacggac attaatcatc gtttgcggat
    14941 acggctgcca atcggcgcaa acggtggcga ggtcttggtt cagcgtttgc agtgccgcca
    15001 aaacttgcag cgcggaaata atgccgtcgc cggtgttgtg tttgtccatg cacaaaatat
    15061 ggccgctggc ttcgccgccg atgagccaac cgcgttggtt cagctgttcc aacacatagc
    15121 ggtcgccgac tttggcgcgg cagaaatcga cgccctgctc tttcagggcg atttccatcg
    15181 ccatattggt catgaccgtg ccgaccacgc cgccgatgtt gataccttct cgggcgcggg
    15241 ctttggcaat gacgtaaatc aggctgtcgc cgtcgtaaac cttaccgttt ttatcgacca
    15301 tcatcaggcg gtcgccgtcg ccatctaagg cgataccata gtcggcttca tgctgtaaaa
    15361 cggcagcctg gagtgtcttg gtataagtcg caccgcattt ttcgttgatg ttgtagccgt
    15421 tgggttcgtc gccgatgctg acgacttgtg cgcccagttc gtgaaacact ttgggtgcga
    15481 cgctgtaagc cgcgccgttg gcggcatcga cgaccagctt cagcccgcgc aaatcggaat
    15541 gcgtagggaa ggtggatttg caaaattcga tatagcggtc gtccgcgccg ttgatgcggc
    15601 gtgcgcgacc gagacgggcg gacggttggg ttttcatttc gccgtcgatt ttggcttcga
    15661 tttccaactc gacttcatcg gaaagtttca cgccgccttc ggcaaagaat ttgatgccgt
    15721 tgtcggaata ggcgttgtgc gacgcggaaa tcatcacgcc ggcggacagg cgcaacgcgc
    15781 gggtcagata agccacgccg ggcgtgggca gcggtccggt ctgtaccaca ttcacacccg
    15841 ccgccgtaaa accggccacc aaagcggctt ccagcatata gccggaaatg cgcgtgtctt
    15901 tgccgatgag gacggtcggt ttctggtcgg tgtcgtgctg caccaaaacc tgccccgccg
    15961 catagccgag tttcaatacg aaatcgggcg taatcggaaa ttgccccact tcgccgcgca
    16021 cgccgtccgt gccgaaatat ttttttgcca tgtgttgctc cgagaatgtg gaccgttgtc
    16081 cgagattata cagtcagttt gtgccttgct gtctgcaccg ttgatgccgt ctgaaaccac
    16141 cccgcccttt tcagacggca tgaagtatgc gaaccgctgt ttacagattg atgcccaacg
    16201 cttcccacac cttcaacgcg tccgccgtcg ccttcacatc atgcacccgc acgatttgtg
    16261 cgccgcgcgc cacggaagcc agcgccgccg ccacgctgcc gtgtacgcgc gccgccgcgt
    16321 cggtttcgcc cgtcagttcg cctaccatgc gtttgcgcga tacgccgatt agcagcggaa
    16381 agcctgtttc cgccatcaat tcgggcaaat gccgcatcag cgcgatattg tgttgcaggt
    16441 ttttgccgaa gccgaaaccc gggtcgagcg tgatgcgttg cggtgcgatg cctgccgcga
    16501 tgcattccgc cgcccgcgct ttcaaatacc gcgccacttc accgacaaca tcctgatatt
    16561 tcggattaat ctgcatgttt tcaggcaaac cccgcatgtg catcaggcaa atgcccgtgt
    16621 ccgtctggcg cgccagcaat tcgactgcgc cttcgtcggt caacgccgcc acatcgttga
    16681 taatatcgat accgccgagt gccaacgctt tttccataac caccgtgcgg cgcgtgtcca
    16741 aactgacggg aacaccccac cccgccactt ccgccaatac aggctcaacc cgcgcccatt
    16801 cttcttcagg cgaaacataa tccgcacccg gccgcgtcga ttcgccgccg atgtcgagaa
    16861 tgtccgcgcc ctctttcaaa agccgttcgg cgtgcgccaa agcggtttgg gcgttttgcg
    16921 aatacgcgcc gccgtcggaa aaagaatcgg gcgtgagatt cacgataccc atgattttcg
    16981 gtttgtccaa accgatttca aaccgtcctg cctgccaaac gtgtcgtgcc atctgaactc
    17041 ctcccaaaat aaaaaacaga ttatatgccg tctgaaaccg tcttgtgcgc ttcagacggc
    17101 accgctattc gggcggcaga cggcatgttg tccgaatgtc tgctccgcct ttgaatctgc
    17161 cggtatgcct gctatccgcc cgacttttca aaacaggttc cgacgattcc gcacgcgcct
    17221 gccgcctttg ccaagccgta caggatttcc tgcggcatat cgcggttcca taatcccgta
    17281 atattcgcaa tcacgggcag atggctgatt tggcggactt tcacgatgga ttcgacatcc
    17341 aaacggtagg gatggtcttt ggtatggctc aacacgcccg actcgcctag aatcaggtgg
    17401 cggttgccgc gcgagacgac atattctgcg gcattcaacc aatcttcggc agaatggtgc
    17461 ttgtctttac acagcaccaa gggaatgttc aggtttccgg cttcattcaa tacggcaaga
    17521 tcggacatca gcccgccgcc caaatacagg atgtccgccc ccgcattcaa agccgcttcg
    17581 acatggcgga cgttgcggac gcgcaccaat acgggtttcc ctgcgccatg cgccgatgcg
    17641 gtctgttccg ccaaccgtct gcaccgtccc cgcccttcat ccgcacttga agtgtcgtat
    17701 aagtttgccg aagtgaaaaa cggatccaga aacactgcat ccgcattgcg ccatactgac
    17761 ggttctgcgg cgatacggac ggtttccccg ccgccgaaag ccacgccttt ggcggcaacg
    17821 cggctgtctt ccgcccgatt ttcccgactg acggttttcc atgtatccaa aatgcggacg
    17881 gctttctcga cctccggcag cgtctgcacc tccctgacgc tcaaaaccct atcgtcgccg
    17941 attgcgccga tgacagtacg ctcgtcgccg tgagaaatgt gttctcgcag acctctgctg
    18001 cggataaagg cgacaacgcc ggcaatgtcc gcttcggcgg cacgcctgct catgacaata
    18061 atcatatttc ctcctgacac aagaaacggc ctgcccaaaa taggattttt gcaagccgtg
    18121 ttatactgtg gcgtgtttta cagattgttc gggctatgga tttattatcg gttttccaca
    18181 aataccgtct gaaatatgcg gtggccgtgc tgacgatact gcttttggcg gcagtcgggc
    18241 tgcacgcttc cgtatatcgc accttcacgc ctgaaaacat ccgcagccgc ctccaacaaa
    18301 gcattgcaca cacacaccgg aaaatctcgt ttgatgcgga cattcagcgc aggctcctgc
    18361 cccggccgac cgtcatcctg aaaaacctga ccattaccga acccggcggc gaccggactg
    18421 ccgtttccgt ccaagaaacc aaaatcggat tgagctggaa aaacctgtgg tcggatcaga
    18481 tacagattga aaaatgggtg gtttcgagtg cggaacttgc cctgacgcgc gacgggaaag
    18541 gtgtttggaa cattcaagac ctgatcgaca gccaaaaacg ccaagcctca gtcaaccgca
    18601 ttatcgtcga aaacagcacc gtccgcctca atttcctgca ggaacagctt atcctgaagg
    18661 aaatcaacct caacctgcaa tcccccgatt cgtcggggca gccgtttgaa agttcgggca
    18721 tactggtttg gggaaagctg tccgtcccgt ggaaaagcag ggggctgttc ctttcaaacg
    18781 gcatcggccc gcccgaaatc tcaccgttcc attttgaagc ttccacttcg ctggacggac
    18841 acggcattac catttccacc accggcagcc cttctgtccg cttcaacgcc ggcggagcgg
    18901 atgccgccgg cctcggcctg cgtgcagaca cttccttccg taacctccac ctgaccgccc
    18961 aaatccctac gctggcactc aggaacaaca gcattaaaat tgaaaccgtc aacggcgcat
    19021 ttaccgccgg cggcgaatat gcccaatggg acggttcgtt caaactcgac aaagccaacc
    19081 tgcactccgg catcgccaac atcggcaacg ccgaaatctc cggcagcttc aaaacaccgc
    19141 gccaccagac caacttctcc ctcaattcgc cgctcgtatg gacggaaaac aaagggctgg
    19201 acgcgccgcg cctgtatgta tcgacccttc aggataccgt caaccgcctg ccgcaacccc
    19261 gtttcatcag ccggctcgac ggttcgctgt ccgtaccgaa tctgcaaaat tggaatgccg
    19321 aattaaacgg cacattcgac cgccaaaccg ttgccgcgaa attcagatac acacatgaag
    19381 acgcaccgca tctggaagcc gccgtcgcac tgcaaaaatt gaacctgacc ccctatcttg
    19441 acgacgtgcg gcaacaaaac ggcaaaatat ttcccgacac cctcgccaag ctgtccggcg
    19501 acatcgaggc gcacctgaaa atcggaaaag tccaacttcc cggcctgcaa ctggacgata
    19561 tggaaaccta cctccacgcc gacaaagacc atatcgcgct cagccgtttc aagtcagggc
    19621 tttacggcgg ccataccgaa ggcggcatca gcatcgccaa cacccgtccc gccacttacc
    19681 gcctgcaaca gaatgcaagc aacatccaaa tccaaccgct gctgcaagac ctgttcggct
    19741 tccacagctt cagcggcaac ggcgacgcgg tcatcgacct gaccgcgggc ggcgaaaccc
    19801 gaaaagagct tatccgctcg cttcaaggca gcctgtcgct aaatatttcc aacggtgcgt
    19861 ggcacggtat cgacatggac aatatcctga aaaacggcat ttcgggcaaa actgccgaca
    19921 atgccgcacc cagcacaccc ttccaccgat tcacgctcaa cagcgaaatt tcagacggca
    19981 tcagccgcca catcgatacc gaactcttct ccgacagcct ctatgttacc agcaacggct
    20041 ataccaatct ggatacgcag gaattgtctg aagatgtcct tatccgcaac gccgtccatc
    20101 cgaaaaacaa accgattccc ctgaaaatca ccggtacggt ggacaagccg tccattaccg
    20161 tcgattacgg caggctgacc ggcggcatca attcgcgcaa agagaaacag aaaatcctcg
    20221 aagacaccct gctggaacaa tggcagtggc tcaaacctaa agaaccgtaa acatcctgcg
    20281 tacacaaatg ccgtctgaaa cacccccacg cttcagacgg catgaccgta aaacctacaa
    20341 ccccaattcc tcccaaatcc catcaatctt agccgtaacc gcagggtctt ttttgatgac
    20401 gcgtccccat tcgcggtcgg tttctcccgg ccatttgttg gtcgcatcca aacccatttt
    20461 gccgccgagt ccgctgacgg ggctggcgaa gtcgagataa tcgatgggcg tgttttctac
    20521 caaaacagtg tcgcgcacgg ggtccatgcg cgtggtgacc gcccagatga cttctttcca
    20581 gtcgcgcacg ttcacatcgt catccaccac gatgatgaat ttggtataca taaactggcg
    20641 caggaacgac cagcagccca tcatcacgcg cttggcgtgt ccggcgtact gttttttcat
    20701 gctcaccacc gccatgcggt aggagcagcc ttcgggcggc aggtagaaat cggtgatttc
    20761 gggaaactgc ttttgcaaga gcggtacgaa cacttcgttc aatgccacgc ccaaaacggc
    20821 aggttcatcg ggcggtttgc ctgtgtaggt cgaatggtaa atcgggtttt cgcgcatggt
    20881 gatgcgttcg accgtaaaca tggggaaatg gtcctgctcg ttgtaatagc cggtgtggtc
    20941 gccgtatggg ccttccagcg cggtttcgtt cggatgaatc acgccttcca acacaatttc
    21001 ggcgcgtgca ggcacttgca aatcgttgcc gatacatttc accagctccg tccgcgaacc
    21061 gcgcagcagt ccggcaaact ggtattcgct caaggtatcg ggaacaggcg ttaccgcgcc
    21121 caaaatggtg gcggggtcgc agccgagtac gacggcgacg ggatacggcg tatcgggatt
    21181 gagtttgtgg aattcctgat aatccaacgc gccgccgcga tgcgacagcc agcgcataat
    21241 cagcttgttt ttgccgatga gttgttggcg gtaaatgccg agattttggc gttttttgtg
    21301 cggcccgcgc gtgacggtca agccccatgt taccagcggc gcaacgtctt ccggccagca
    21361 atgctgaatc ggaagttgat acaaatcaac gtcttcgcct tcccacacga tttcctgaca
    21421 cggcgcgttt ttcaccacgt tcggcaccat gctccaaatg tctttcaaga gcggcagttt
    21481 ggaaaacgcg tctttgatgc ctttgggcgg ttcgggttct ttcaaatacg ccagcgtctg
    21541 cccgatttcg cgcagcttgg acacgctgtc cgcacccatg cccattgcca cacgttcggg
    21601 cgtgccgaac aggtttgcca acacgggata atcgtagcgc gtaccgtcgg gcttaactgg
    21661 gttttcaaac aacaatgccg gcccttcggc gcgcagcacg cggtcggcga tttcagtcat
    21721 ttccaaatgc ggggaaacag gatgcgcgac gcgcttgagt ttgccctgct gctcgagcat
    21781 agcgatgaag tcgcgcaggt ctttgtattt catatttatc ctttttgtcc ttttatcctg
    21841 aacaatccaa ttcggatacc gcccctatcc ttgcctgcgc ttcggcatat tctatgccgt
    21901 gataaaagtc gcgtaccagc ggatgttcgc cgccttgatg gagttgcaac aaaggacgtt
    21961 gaccatcggg ttgggtaacg acattgcagt gcagaccgaa ggtgtcggtt tcataagggg
    22021 gcagctggtt gcagatcatg ccgaaataaa cagcgttttc aaggttgtcg taaaagcggc
    22081 tttgatagtc gttaaaactc ttttcgctga cggataccca cacgccatat tccagcgttt
    22141 cctcatgccc gataatcgga atcggcagca ccgcgcggat aaagcggtcg gtttggtcgg
    22201 gatagcggat gatgcagaaa tcagaatcgc attctgcttg ataagcaatg cgttcttctt
    22261 cactgagttg attataggga tcgggggcgg taaagccgat tgcgggcata tcttcatgtt
    22321 tttcgccgca ggaagtgcaa gtgtacataa ggtttcagac tttcaaaacg agtttgcggt
    22381 aaagccattc gccggcaaac agcatcccca tcaatacata ggcaatcacg cctgtataaa
    22441 ccgcccacca atcatatcgc cccaaccgag ccaacaaagc ggtaagcgtc ccgttgatta
    22501 taaaaaatac gcaccaaacc tgcgttaccc ggcgggtata gcgcacggct ttttcaggca
    22561 ggtcgggctg ttgcagccgc gcaagttttt caatcaccgt ctgtccggca aacaggcttc
    22621 ccccgaacac cgccaacatc atcagattga cgaggacggg ataccaatac attgaatcat
    22681 gccgcccgaa caccaatact gcggcaaaaa acagtgtaat aaacaaagcc gcataacgct
    22741 gttggggcaa tttggcagtc agggcgcgca gcagccacaa cccgcacatc gccgccgcca
    22801 gccagacaaa ccagcccgcc tccctgccgt aatatagtgg attaacaaaa accagtacag
    22861 cgttgcctcg ccttgccgta ctatctgcgg cttcgtcgcc ttgtcctgat ttttgttaat
    22921 ccactatacc acaaagcggg ataggcaatg cttaatacgg tcagaaaaat atgtccgaaa
    22981 aaaccgggtt tcattttgaa tccgcacaaa tgttttcaga cggcatccga taaaaacatg
    23041 ccgtctgaaa aataattaga aatacccgat tagcccgcct gaatcttcaa taccgcctgt
    23101 accacgtcgt tgacggtgcg gacattgcgg aaatcttcag cctgcagctt gcgggctgcc
    23161 acagccattc acgattgcga tatacccggc ggcattcccg actgccgttc agcagaaagc
    23221 gcacccattc caaaccgctc caatatgcct cgggcagcat accggcttca gacggcatat
    23281 cgtccgaagc agataaagtc aggctgtaac gcgtcccttt ggtcagaacc atcgccaaag
    23341 cataagcaaa cggcgcgcgc gttgccgata cggcatatcc ttccggcagc ggatcgtccg
    23401 ccgccaaaac caaaaccgac ccgcatccct cttccaacag tgatgccgct tccgccaatg
    23461 ccgtttccac accgtcggca cacacggcca atgccgtctg ctcgctcata tcccgcctca
    23521 atatcgacca ttaccccgcc gttgcattgt gcaccgacaa accgaacgaa gtcggcgaca
    23581 cggtttgcga tttcaacagt tccaaccaca aatcgaaact gcgcgccatt tccccgtcgt
    23641 gcgaggcata aactatagtg gattaaattt taggggctgt actagattag cagatatgtt
    23701 accctcgaaa tatgaagata acacactgca aattaaagaa aaaagtacag aaagaactgc
    23761 tccgtttttt gtgct
//
LOCUS       DAXHPV010000014        23346 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.014, whole genome shotgun sequence.
ACCESSION   DAXHPV010000014 DAXHPV010000000
VERSION     DAXHPV010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 23346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23346
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.014"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..808
                     /locus_tag="ACFM6C_000384"
     CDS             <1..808
                     /locus_tag="ACFM6C_000384"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6157896.1"
                     /translation="RYRTPNIKYIYQDNQGTAEARNTGIKNSNGKYIVFIDSDDFINC
                     QVLLDFLSKDDIDMPDVVFLNAVKYDKGSVSHFGEDYQPEKILNQSKVEVLKGLCRFR
                     KFPGSACNKIIKRELIIKEKLFFEKEVYAEDIEWSMRLFNAATTFSYLDGCYYYYRQG
                     RKDSKTGTVSEKSIKSLLYILEKNAEMEFDRDISSYLYSFLSYEYLVLLFIMTSKNIE
                     CDADIKRRAYHLRFMLLKSNKLIYKLIFPIITLFGVDITGRILKAIRGNI"
     gene            849..1379
                     /locus_tag="ACFM6C_000385"
     CDS             849..1379
                     /locus_tag="ACFM6C_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HFC6157897.1"
                     /translation="MNAIRTFQNRTPEIHESCMIDEACVVIGEVSLAEDVSVWPCAVL
                     RGDVNSITVGARSNIQDGSVLHVSHKTAAKPEGSPLVIGEDVTVGHKVMLHGCRIGNR
                     VLVGMGTTVLDDAVIEDEVMIGAGSLVPPRKRLAGGYLYVGSPVRQVRVLTDEEKAFL
                     KYSAAHYVKLSKQYGM"
     gene            complement(1396..1527)
                     /locus_tag="ACFM6C_000386"
     CDS             complement(1396..1527)
                     /locus_tag="ACFM6C_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor domain protein"
                     /protein_id="HFC6157898.1"
                     /translation="MPSKPEKRASDGIFACNSNADGQNQGASDTVIGHLVRVNLGLT"
     gene            complement(1546..3141)
                     /locus_tag="ACFM6C_000387"
     CDS             complement(1546..3141)
                     /locus_tag="ACFM6C_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007342770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HFC6157899.1"
                     /translation="MSQEILDQVRRRRTFAIISHPDAGKTTLTEKLLLFSGAIQSAGT
                     VKGKKTGKFATSDWMDIEKQRGISVASSVMQFDYKDHTVNLLDTPGHQDFSEDTYRVL
                     TAVDSALMVIDAAKGVEAQTIKLLNVCRLRDTPIVTFMNKYDREVRDSLELLDEVENI
                     LQIRCAPVTWPIGMGKNFKGVYHILNDEIYLFEAGGERLPHEFDIIKGIDNPELEQRF
                     PLEIQQLRDEIELVQAASNEFNLDEFLAGELTPVFFGSAINNFGIQEILNSLIEWAPA
                     PKPRDATVRMVEPDEPKFSGFIFKIQANMDPKHRDRIAFLRVCSGKFERGMKMKHLRI
                     NREIAASSVVTFMSHDRELVEEAYAGDIIGIPNHGNIQIGDSFSEGEQLAFTGIPFFA
                     PELFRSVRIKNPLKIKQLQKGLQQLGEEGAVQVFKPMSGADLILGAVGVLQFEVVTSR
                     LANEYGVEAVFDSASIWSARWVSCDDKKKLAEFEKANAGNLAIDAGGNLAYLAPNRVN
                     LGLTQERWPDIVFHETREHSVKL"
     gene            complement(3248..3643)
                     /gene="hisI"
                     /locus_tag="ACFM6C_000388"
     CDS             complement(3248..3643)
                     /gene="hisI"
                     /locus_tag="ACFM6C_000388"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HFC6157900.1"
                     /translation="MDKNLLEAVKFDEKGLVCAIAQDAETKRVLMVAWMNAEALQKTV
                     ETGFAHYYSRSRQKQWMKGEESGHTQKVRELRLDCDGDAIVMLIAQNGGIACHTGRES
                     CFYKVWRGSAWETADAVLKDEKEIYGSTH"
     gene            complement(3674..4441)
                     /gene="hisF"
                     /locus_tag="ACFM6C_000389"
     CDS             complement(3674..4441)
                     /gene="hisF"
                     /locus_tag="ACFM6C_000389"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HFC6157901.1"
                     /translation="MALAKRIIPCLDVKDGRVVKGVNFIGLRDAGDPVEAAKRYNGEG
                     ADELTFLDITASSDNRDTILHIIEEVAGQVFIPLTVGGGVRTVADIRRLLNAGADKVS
                     INTAAVTRPDLIDEAAGFFGSQAIVAAVDAKAVNPGNTRWEIFTHGGRNPTGLDAVEW
                     AIEMQKRGAGEILLTGMDRDGTKQGFNLPLTRAVAEAVDIPVIASGGVGNVRHLIEGI
                     TEGKADAVLAAGVFHFGEIAIREAKRAMREAGIEVRL"
     gene            complement(4454..5191)
                     /gene="hisA"
                     /locus_tag="ACFM6C_000390"
     CDS             complement(4454..5191)
                     /gene="hisA"
                     /locus_tag="ACFM6C_000390"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HFC6157902.1"
                     /translation="MLLIPAIDLKEGRCVRLRQGLMEEATVFSDSPAETALHWFKQGA
                     RRLHLVDLNGAFAGVPQNLPAIKDILAAVAKDIPVQLGGGIRDLKTIGQYLDLGLNDV
                     IIGTAAVKNPDFVREACKAFPGRIIVGLDAKDGMAAIDGWATVTGHHVIDLAKRFEDD
                     GVNSIIYTDIGRDGMMSGVNIDATVKLAQAVRIPVIASGGLTGLDDIRALCAAEKHGV
                     AGAITGRAIYEGSIDFAQAQQLADSLD"
     gene            complement(5224..5862)
                     /gene="hisH"
                     /locus_tag="ACFM6C_000391"
     CDS             complement(5224..5862)
                     /gene="hisH"
                     /locus_tag="ACFM6C_000391"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HFC6157903.1"
                     /translation="MQIAIIDYGMGNLHSVLKSVRTAGQLAGKNTEIFLSGDPERVSR
                     ADKVIFPGQGAMPDCMAALTRDGLDEAVKDALKNKPFFGICVGAQLLFDHSEEGNTDG
                     LGWFGGKVRRFERDLRDPQGCRLKVPHMGWNTVRQTQNHPLFKDIPQDTRFYFVHSYY
                     FAPENPETILGESDYPSPFACIVGKDNVFATQFHTEKSHDAGLTMLKNFLNW"
     gene            complement(5993..7495)
                     /gene="pta"
                     /locus_tag="ACFM6C_000392"
     CDS             complement(5993..7495)
                     /gene="pta"
                     /locus_tag="ACFM6C_000392"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016407 - acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HFC6157904.1"
                     /translation="MAKVLIVPVSAGLDASAAAQAFAKALDAQIFQAVDATAETLLAQ
                     GKSDDWFDALVGKVAALDAANLVIEGIAPDADKIYLAGKNVELALSLDAAAVFAVRSD
                     NADADELANRVNLAKQFFAAAPGVLEGFVVDGAAASVAEAAAEKTGLTFFGSSDALKD
                     VSVLAGREAKRLSPAQFRYNLIDFARQADKRIVLPEGAEPRTVQAAAICHEKGIARCV
                     LLAKREEVEAVAKERGISLPDSLEIIDPASLVEQYVEPMCELRKSKGLTPEDARKQLQ
                     DTVVLGTMMMAQNDVDGLVSGAVHTTANTIRPALQLIKTAPGASLVSSVFFMLLPNQV
                     LVFGDCAVNPNPTAQQLADIAIQSADSAKAFGIDPKVAMISYSTVNSGSGPDVDIVIE
                     ATKLAREKRPDLAIDGPLQYDAATVPGVGKSKAPGSPVAGQATVLVFPDLNTGNCTYK
                     AVQRSANVLSVGPLLQGLRKPVNDLSRGALVEDIVFTIALTAVQAKQMEG"
     gene            complement(7680..8738)
                     /gene="fbpC"
                     /locus_tag="ACFM6C_000393"
     CDS             complement(7680..8738)
                     /gene="fbpC"
                     /locus_tag="ACFM6C_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter ATP-binding protein FbpC"
                     /protein_id="HFC6157905.1"
                     /translation="MTAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIVGASGCGKT
                     TLLRCLAGFEQPDFGEISLSGRTIFSKNTNLPVRERRLGYVVQEGVLFPHLTVYRNTA
                     YGLGNGKGKTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRVALARALAPDPELI
                     LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRIL
                     QTASPHELYRQPADLDAALFIGEGIVFPAALNADGTADCGLGRLPVQSGAPAGTRGTL
                     LIRPEQFSLHPHSAPTASIHAVVLKTTPKARHTEISLRVGQTVLTLNLPSAPTLSDGI
                     SAVLHLDGPALFFPGNTL"
     gene            complement(8759..10276)
                     /gene="fbpB"
                     /locus_tag="ACFM6C_000394"
     CDS             complement(8759..10276)
                     /gene="fbpB"
                     /locus_tag="ACFM6C_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease FbpB"
                     /protein_id="HFC6157906.1"
                     /translation="MSPKKIPIWLTGLILLIALPLTLPFLYVAMRSWQVGINRAVELL
                     FRPRMWDLLSNTLTMMAGVTLISIVLGIACALLFQRYRFFGKTFFQTAITLPLCIPAF
                     VSCFTWISLTFRVEGFWGTVMIMSLSSFPLAYLPVEAALKRISLSYEEVSLSLGKSRL
                     QTFFSAILPQLKPAIGSSVLLIALHMLVEFGAVSILNYPTFTTAIFQEYEMSYNNNTA
                     ALLSAVLMAVCGIVVFGESIFRGKAKIYHSGKGVARPYPVKTLKLPGQIGAIVFLSSL
                     LTLGIIIPFGVLIHWMMVGTSGTFALVSVFDAFIRSLSVSALGAILTILCALPLVWAS
                     VRYRNFLTVWIDRLPFLLHAVPGLVIALSLVYFSINYTPAVYQTFIVVILAYFMLYLP
                     MAQTTLRTSLEQLPKGMEQVGATLGRGHFFIFRTLVLPSILPGITAAFALVFLKLMKE
                     LTATLLLTTDDVHTLSTAVWEYTSDAQYAAATPYALMLVLFSGIPVFLLKKYAFK"
     gene            complement(10344..11339)
                     /gene="fbpA"
                     /locus_tag="ACFM6C_000395"
     CDS             complement(10344..11339)
                     /gene="fbpA"
                     /locus_tag="ACFM6C_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter substrate-binding protein
                     FbpA"
                     /protein_id="HFC6157907.1"
                     /translation="MKTSIRYALLAAALTAATPALADITVYNGQHKEAAQAVADAFTR
                     ATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTIN
                     ETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYAPT
                     SGAFLEQVVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEIDAALINNYY
                     WHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLASKEG
                     QRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK"
     gene            complement(11590..12055)
                     /locus_tag="ACFM6C_000396"
                     /pseudo
     CDS             complement(11590..12055)
                     /locus_tag="ACFM6C_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255805.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4375 domain-containing protein"
     gene            complement(12113..13489)
                     /gene="argH"
                     /locus_tag="ACFM6C_000397"
     CDS             complement(12113..13489)
                     /gene="argH"
                     /locus_tag="ACFM6C_000397"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HFC6157908.1"
                     /translation="MHDKTWSGRFNEPVSELVKQYTASIGFDRRLAEWDIQGSLAHAQ
                     MLKETGVLDEGDLADIRRGMAEILEEIRSGKIEWSSDLEDVHMNIERRLTDKIGDAGK
                     RLHTGRSRNDQVATDIRLWLRDQITVIRSLIQSLQTALLDLAEQNAETVMPGFTHLQV
                     AQPVSFGHHMLAYVEMLGRDNERMADCRRRVNRMPLGAAALAGTTYPIRREITAELLG
                     FEQICQNSLDAVSDRDFAIEFTAAASLVMVHLSRLSEELILWMSPRFGFIDIADRFCT
                     GSSIMPQKKNPDVPELVRGKSGRVIGHLIGLITLMKSQPLAYNKDNQEDKEPLFDTAD
                     TLIDTLRIYADMMRGVTVKPDNMRAAVMQGFATATDLADYLVKKGMPFRDAHEVVAQA
                     VRHADQAGVDLSELPLEVLQGFSDLIADDVYGVLTPEGSLNARNHLGGTAPEQVRFQV
                     KRWREMLA"
     gene            complement(13508..14377)
                     /gene="galU"
                     /locus_tag="ACFM6C_000398"
     CDS             complement(13508..14377)
                     /gene="galU"
                     /locus_tag="ACFM6C_000398"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006011 - UDP-glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HFC6157909.1"
                     /translation="MKPIRKAVFPVAGMGTRFLPATKASPKEMLPIVDKPLIQYAVEE
                     AVEAGCTEMVFVTGRNKRSIEDHFDKAYELETELEMRHKDKLLEHVRNILPPNITCLY
                     IRQAEALGLGHAVLCARAAIGDEPFAVILADDLIDAPKGALKQMVEVYGRSGNSILGV
                     ETVEASQTGSYGIVETEQLKQFQRITGIVEKPKPEDAPSNLAVVGRYILTPRIFDLLT
                     GLPRGAGNEIQLTDGIAKLLDHEFVLAHPFEGTRYDCGSKLGYLEATVAYGLKHPETG
                     EPFRRLLEKYRTE"
     gene            complement(14405..15004)
                     /gene="rdgB"
                     /locus_tag="ACFM6C_000399"
     CDS             complement(14405..15004)
                     /gene="rdgB"
                     /locus_tag="ACFM6C_000399"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035870 - dITP diphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0036222 - XTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HFC6157910.1"
                     /translation="MSEKPEKIVLASGNVGKLEEFGNLFKPYGITVLPQSEFGIPECP
                     EPYSTFVENALAKARHAAEYSGLPALADDSGICAAALNGAPGIHSARYAGDHPKSDTA
                     NNLKLAAELVGKADKSCCYVCVLVFVRHKDDPRPIIAEGVWHGQWNGVPAGENGFGYD
                     PYFYLPGHGKTAAELDSEVKNRESHRAQALAELLRKLAL"
     gene            complement(14997..15230)
                     /locus_tag="ACFM6C_000400"
     CDS             complement(14997..15230)
                     /locus_tag="ACFM6C_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NGO_0222 family membrane protein"
                     /protein_id="HFC6157911.1"
                     /translation="MNRRKIYLLSVALFTLAFMLLVLLGAYLLTAGSKAFAVAAFLFA
                     FGALFGQIGALALYLRHKSLHAAQSAAKENRYV"
     gene            complement(15342..15875)
                     /locus_tag="ACFM6C_000401"
     CDS             complement(15342..15875)
                     /locus_tag="ACFM6C_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HFC6157912.1"
                     /translation="MADFNQILTPGDVDGGIINVVNEIPAGSNHKIEWNRKLAAFQLD
                     RVEPAIFAKPTNYGFIPQTLDEDGDELDVLLVTEQPLATGVFLEARVIGVMKFVDDGE
                     VDDKIVCVPADDRNNGNAYKTLSDLPQQLIKQIEFHFNHYKDLKKAGTTKVESWGDAE
                     EAKKVIKESIERWNKQA"
     gene            complement(15977..16435)
                     /gene="nudB"
                     /locus_tag="ACFM6C_000402"
     CDS             complement(15977..16435)
                     /gene="nudB"
                     /locus_tag="ACFM6C_000402"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008828 - dATP diphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0019177 - dihydroneopterin triphosphate
                     pyrophosphohydrolase activity [Evidence IEA];
                     GO_process: GO:0046656 - folic acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HFC6157913.1"
                     /translation="MPMAKPLKYPVSALVVLYSGDGGILLIERTHPEGFWQSVTGSLE
                     PGETVAQTARREVWEETGILLADGQLQDWHDSTVYEIYHHWRHRYPKGVFENREHLFS
                     AEIPRDTPVVLQPEEHVSYGWFGLEEAAEKVFSPSNRRAILELGRFLGKR"
     gene            16646..16722
                     /locus_tag="ACFM6C_000403"
     tRNA            16646..16722
                     /locus_tag="ACFM6C_000403"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:16680..16682,aa:Pro,seq:ggg)
     gene            16880..18706
                     /gene="mafB"
                     /locus_tag="ACFM6C_000404"
     CDS             16880..18706
                     /gene="mafB"
                     /locus_tag="ACFM6C_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 2"
                     /protein_id="HFC6157914.1"
                     /translation="MGISRKISLILSILAVCLPMHAHASDLANDSFIRQVLDRQHFEP
                     DGKYHLFGSRGELAERSGHIGLGNIQSHQLGNLMIQQAAIKGNIGYIVRFSDHGHEVH
                     SPFDNHASHSDSDEAGSPVDGFSLYRIHWDGYEHHPADGYDGPQGGGYPAPKGARDIY
                     SYDIKGVAQNIRLNLTDNRSTGQRLADRFHNAGSMLTQGVGDGFKRATRYSPELDRSG
                     NAAEAFNGTADIVKNIIGAAGEIVGAGDAVQGISEGSNIAVMHGLGLLSTENKMARIN
                     DLADMAQLKDYAAAAIRDWAVQNPNAAQGIEAVSNIFMAAIPIKGIGAVRGKYGLGGI
                     TAHPIKRSQMGAIALPKGKSAVSDNFADAAYAKYPSPYHSRNIRSNLEQRYGKENITS
                     STVPPSNGKNVKLADQRHPKTGVPFDGKGFPNFEKHVKYDTKLDIQELSGGGIPKAKP
                     VFDAKPRWEVDRKLNKLTTREQVEKNVQEIRNGNKNSNFSQHAQLEREINKLKSADEI
                     NFADGMGKFTDSMNDKAFSRLVKSVKENGFTNPVVEYVEINGKAYIVRGNNRVFAAEY
                     LGRIHELKFKKVDFPVPNTSWKNPTDVLNESGNVKRPRYRSK"
     gene            18709..19173
                     /locus_tag="ACFM6C_000405"
     CDS             18709..19173
                     /locus_tag="ACFM6C_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157915.1"
                     /translation="MAIWNYRYYLIPSAAIRNKFNANKDIILDEYRSNGFQNFNENKS
                     FENYFIDNDVILLSIINEAKKQLKLKESWDKDAIMFCDNFGNSLTVWPDDIECELDLR
                     FDYTKFIQKTIDWAIKYNCLLVIEKTGNVVSPNINNLMYEIKAYLESKPWPI"
     gene            19398..19544
                     /locus_tag="ACFM6C_000406"
     CDS             19398..19544
                     /locus_tag="ACFM6C_000406"
                     /inference="COORDINATES: protein motif:HMM:NF012755.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157916.1"
                     /translation="MWYEANIGLINTMSRSNQAGTRLLYSNYGLLYITTDHYISATRF
                     VAWK"
     gene            19556..19843
                     /locus_tag="ACFM6C_000407"
     CDS             19556..19843
                     /locus_tag="ACFM6C_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003708044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="barstar family protein"
                     /protein_id="HFC6157917.1"
                     /translation="MQLEIIGSKIYTEQDFHNQISKIFSIQDYYGNNLDALWDLLSTN
                     VERPITLVWKDAMFSKNQLENIFIEIVNVLERVKKQDEDYGFEEKFNYILE"
     gene            20357..21601
                     /locus_tag="ACFM6C_000408"
     CDS             20357..21601
                     /locus_tag="ACFM6C_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EndoU domain-containing protein"
                     /protein_id="HFC6157918.1"
                     /translation="MIASLTGAAVGGTPVDAQTGGAVGQNAVENNLYLTSEALKKDKQ
                     TARKIYSVIKEQVKHECSSTGRITECRQNIGRIIEFTQDKRFDSRFKDLKKESLYYLN
                     KHPDLVASYLKAEYEKLDREDKSILHRYISPGAEIVSGSLGVVLSGVAGGGSCAETFG
                     LGCAAALVGVTSSYDHVITGTKNFGKKASEQRPTIAVQALKQLGLSEQAAEYVQFSID
                     LFSVGKSGGGIPKAKPVFDAKPRWEVDRKLNKLTTREQVEKNVQETRRRSQSSQFKAH
                     AQREWENKTGLDFNHFIGGDINKKGTVTGGHSLTRGDVRVIQQTSAPDKHGVYQATVE
                     IKKPDGSWEMKKGRGGKPMTNHSMFPKDWDEARIRAEVTSAWEKRKELEGQKWRGTSK
                     SGVEIEGFTEPNRTAYPLYNSK"
     gene            21628..22047
                     /gene="mafI"
                     /locus_tag="ACFM6C_000409"
     CDS             21628..22047
                     /gene="mafI"
                     /locus_tag="ACFM6C_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein MafI"
                     /protein_id="HFC6157919.1"
                     /translation="MYKIKCFYDQFSSGELFNYCQFLDNSSNQKINTRGTVYQYIIYV
                     LTGDLYLQKDIDENLEFIHQAENNPNEVYSGGGQGFCWDISAEKVVFYHNEFDEEDGW
                     PDLSCSLHTFKTALIAWNAFLQLPKSIHSVVETVIEE"
     gene            22137..22208
                     /locus_tag="ACFM6C_000410"
                     /pseudo
     CDS             22137..22208
                     /locus_tag="ACFM6C_000410"
                     /inference="COORDINATES: protein motif:HMM:NF026862.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin type 17 domain-containing
                     protein"
     gene            22205..22447
                     /gene="imm31"
                     /locus_tag="ACFM6C_000411"
     CDS             22205..22447
                     /gene="imm31"
                     /locus_tag="ACFM6C_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Imm31 family immunity protein"
                     /protein_id="HFC6157920.1"
                     /translation="MTNLKLDFYSEVIIKDSCPNDLLENGETIKGKKGVVLGISEEDG
                     IIYGYTILLFDIKYCIYIDKKYIIPTGKKFSRDDFY"
     gene            22525..22770
                     /locus_tag="ACFM6C_000412"
     CDS             22525..22770
                     /locus_tag="ACFM6C_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HFC6157921.1"
                     /translation="MKDSTGQMRLATKDLAEAIKRGEVRSSAFTTKQLKAIEKGESKI
                     PDYTWHHHQDTGRMQLINEDLHHDTGHIGWRAMSKGK"
     gene            22773..23162
                     /locus_tag="ACFM6C_000413"
     CDS             22773..23162
                     /locus_tag="ACFM6C_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157922.1"
                     /translation="MWKIIKEDSDDLGFAIKCLFSQSIDLNEFKLWIEQVIRDMPIED
                     IPFYIFDLADLDEEIDNIYNIIGFVSSYSLSKLRRNALTGIAFLRGIDVYDPPVSKEK
                     ALKALEKYPEIYQKFQHFFPFVELPPL"
BASE COUNT         5611 a         5287 c         6589 g         5859 t
ORIGIN      
        1 cagataccga acaccaaaca tcaaatatat atatcaggat aaccaaggga cggcagaagc
       61 taggaatacc ggaataaaaa attcaaacgg aaaatatata gtctttattg attcagatga
      121 ttttattaat tgtcaggtct tgctggattt tcttagtaaa gatgatattg atatgccgga
      181 tgtggttttt ttaaatgcgg ttaaatatga taagggaagt gtttcacatt ttggcgaaga
      241 ttatcagcct gaaaaaatac tcaatcaatc caaagtcgaa gttttgaaag gattatgccg
      301 atttagaaaa tttccgggtt cggcgtgtaa taagattata aaaagagaat tgattatcaa
      361 agaaaaacta ttttttgaaa aagaggttta tgccgaagat atcgaatggt caatgagatt
      421 atttaatgcg gcaacaactt tttcttattt ggacggttgt tattactatt atcggcaggg
      481 aagaaaagat tctaaaacag gaactgtttc ggaaaaaagt ataaagtcat tattatatat
      541 tttggagaaa aatgcggaaa tggaatttga tagggatata tcaagttatc tttattcttt
      601 tctttcctac gaatatctcg ttttgctttt tatcatgacg agtaaaaata tagagtgtga
      661 tgctgatata aaaagaaggg cgtatcattt aaggtttatg ctgttaaagt ccaataaatt
      721 gatatataag ctgatattcc cgataatcac attattcggg gtcgatatta caggcaggat
      781 tttaaaagca atcaggggga atatttaata aatcctttaa cactatacat cttactgaag
      841 gaggaaaaat gaacgcaatc cgaactttcc aaaaccgcac gcccgaaatc cacgaaagct
      901 gtatgataga cgaagcgtgc gtcgtcatcg gcgaagtgtc gcttgccgaa gacgtttctg
      961 tgtggccgtg cgccgtgttg cgcggcgatg tgaacagcat caccgtcggc gcgcgcagca
     1021 atatacagga cggcagcgtc ctgcacgttt cccacaaaac cgccgccaaa cccgaagggt
     1081 cgccgctggt tatcggcgaa gacgttaccg tggggcacaa agtgatgctg cacggctgcc
     1141 gtatcggcaa ccgcgtcctg gtcggcatgg ggacgacggt tctggacgat gccgtgattg
     1201 aggacgaagt gatgatcggc gcgggcagcc tcgttccgcc gcgcaaacgt ttggcgggcg
     1261 gctaccttta tgtcggttcg ccggtcagac aagtgcgcgt gctgaccgat gaggaaaaag
     1321 cctttttgaa atattccgcc gcgcattatg tgaagctgtc gaaacagtac gggatgtgaa
     1381 atcacatcgg cgttcctacg tcagccccaa attcacgcgg acgagatgcc cgataacggt
     1441 atccgatgcg ccttgatttt gaccgtctgc gtttgagttg caggcaaaaa tgccgtctga
     1501 agcccttttt tcgggtttag acggcatttt attgccgatt gttttttaaa gtttgaccga
     1561 atgttcgcgc gtttcgtgga acacgatgtc cggccaacgt tcttgcgtca accccaaatt
     1621 cacgcggttg ggggcgaggt aggcgaggtt gccgcccgcg tcgatggcga ggttgcccgc
     1681 gttggctttt tcaaactccg ccagtttttt cttgtcgtcg cacgataccc agcgcgccga
     1741 ccagatggat gcgctgtcga acacggcttc tacgccgtat tcgttggcga ggcgcgaggt
     1801 tacgacttca aactgcaaca cgccgaccgc acccaaaatc aaatccgcgc cgctcatcgg
     1861 tttgaacacc tgtaccgcgc cttcttcgcc aagctgttgc aaaccttttt gcagttgctt
     1921 gattttcagc gggtttttga tgcggacgct gcggaacagt tcgggcgcga agaagggaat
     1981 gcctgtaaat gccagttgtt cgccttcgga gaagctgtcg ccgatttgga tgttgccgtg
     2041 gttcgggatg ccgataatgt cgccggcgta ggcttcttca accagctcgc ggtcgtggga
     2101 catgaaggtt accacgctgg aggcggcgat ttcgcggttg atacgcaggt gtttcatttt
     2161 catgccgcgc tcgaatttgc cggagcagac gcgcaagaag gcaatacggt cgcggtgttt
     2221 cgggtccata ttggcttgga ttttgaagat aaatccggaa aacttcggct cgtccggctc
     2281 gaccatacgc acggtcgcat cgcgtggttt cggcgcgggc gcccattcaa tcaatgaatt
     2341 gaggatttcc tgaataccga agttgttaat cgcagagccg aagaatacgg gcgtgagttc
     2401 gccggcgagg aattcgtcga gattgaactc gttggaagcc gcctgcacca attcgatttc
     2461 gtcgcgcaac tgttggattt ccaatggaaa gcgttgttcc aattcgggat tgtctatgcc
     2521 tttgatgatg tcgaactcgt gcggcaggcg ttcgccgccc gcttcaaaga gatagatttc
     2581 gtcgttcagg atgtggtata cgcctttgaa gtttttgccc ataccgatcg gccaagtaac
     2641 gggcgcgcag cggatttgca ggatgttttc cacttcgtcc aagagttcca gcgaatcgcg
     2701 cacttcgcgg tcgtatttgt tcataaacgt aacaatcggc gtatcgcgca ggcggcagac
     2761 gtttaagagc ttgatggttt gcgcttccac accttttgcc gcgtcaatca ccattaatgc
     2821 gctgtccacg gcggttaaaa cgcggtaggt gtcttcggag aagtcttggt gtcccggcgt
     2881 gtccaagagg ttgacggtgt ggtctttata gtcgaactgc atcacgcttg atgccacgga
     2941 aatgccgcgc tgcttctcga tgtccatcca gtcggaagtg gcgaatttgc cggttttttt
     3001 gccttttacc gtacccgcgc tttgaatcgc acctgaaaac agcaagagtt tttcagtcaa
     3061 cgtggtttta cctgcgtcag ggtgggagat gatggcaaac gtgcggcggc ggcgcacttg
     3121 gtcgaggatt tcttgggaca tggttttctt tgcaaaaagg ttcaggccgc ttttcagacg
     3181 gcccggacag tgtttgagac ggcgaaattg tacaaaaaaa tgcctgataa ttcaatgttg
     3241 gaggcggtca gtgcgtgctg ccgtaaatct ctttttcgtc tttcaggacg gcatcggcgg
     3301 tttcccacgc gctgccacgc cagactttgt aaaagcagct ttctcgcccg gtgtggcagg
     3361 cgatgccgcc gttttgggcg atgagcatca caatggcgtc gccgtcgcag tcgaggcgca
     3421 gttcgcggac tttttgcgtg tgtcccgact cttcgccctt catccattgt ttttggcgcg
     3481 aacggctgta atagtgggca aagccggttt cgacggtttt ttgcagggct tcggcgttca
     3541 tccacgccac cattaaaaca cgtttggttt cggcatcttg ggcgatggcg caaaccaaac
     3601 ctttttcgtc aaatttgacg gcttcaagca ggtttttatc catattttct ttcagacggc
     3661 atggtcgggg cggtcagagg cgcacttcga tgccggcttc gcgcatagcg cgtttggctt
     3721 cgcggatggc gatttccccg aaatggaaaa cgccggcggc aagtacggca tcggctttgc
     3781 cttcggttat gccttcaatc aggtgccgga cattgccgac cccgccggag gcgatgacgg
     3841 ggatgtcgac ggcttcggca acggcgcggg tcagcggcag gttgaaaccc tgtttcgtac
     3901 cgtccctgtc cataccggta agcaggattt cgcccgcgcc gcgtttttgc atttcgatcg
     3961 cccattccac cgcatccaaa ccggtcggat tgcgcccgcc gtgggtaaag atttcccagc
     4021 gtgtgtttcc ggggttgacg gctttggcat cgacggcggc gacgatggct tgcgaaccga
     4081 aaaatccggc ggcttcgtca atcaggtcgg gacgggtaac ggcggcggtg ttgatgctaa
     4141 ctttgtccgc gccggcattg agcaggcggc ggatgtcggc aacggtgcgt acgccgccgc
     4201 cgacggtcag ggggatgaag acttgtccgg caacttcttc gatgatgtgc aggatggtgt
     4261 cgcggttgtc ggatgaggcg gtgatgtcga ggaaggtcaa ttcgtccgcg ccttcgccgt
     4321 tgtagcgttt ggcggcttcg acggggtcgc ccgcgtcgcg caaaccgatg aagttcacgc
     4381 ctttgacgac gcgcccgtct tttacgtcga gacaggggat gatgcgtttt gccagtgcca
     4441 taatcggatg cctttagtcg agggaatctg ccagttgctg cgcttgggca aaatcgatgc
     4501 tgccctcgta aatcgcgcgg ccggtaatcg cgcctgctac gccatgtttt tcggcggcac
     4561 acagggcgcg gatgtcgtcc aagccggtca gtccgccgga ggcgatgacg ggaatgcgga
     4621 cggcttgggc gagtttgacc gtcgcgtcga tgttcacgcc gctcatcata ccgtcgcgcc
     4681 cgatgtcggt gtagatgatg ctgttgacac cgtcgtcttc aaagcgtttt gccaaatcaa
     4741 ttacatgatg cccggttacg gttgcccagc cgtcgatggc ggccataccg tctttggcat
     4801 ccagcccgac aataatcctg ccggggaagg ctttgcacgc ctcgcgcacg aagtcggggt
     4861 ttttgaccgc cgccgtgccg ataatcacgt cgttcagacc caaatccaaa tattgtccga
     4921 tggttttcaa atcgcgtatg ccgccgccga gctgtacggg gatgtctttg gcgacggcgg
     4981 caaggatgtc tttgatggcg ggcaggtttt gcggaacgcc ggcaaacgcg ccgttcaaat
     5041 ctaccagatg caggcggcgc gcgccttgtt tgaaccagtg cagtgcggtt tcggcgggcg
     5101 aatcggaaaa gacggtcgcc tcttccatca gcccttgtct caggcggacg cagcgtcctt
     5161 ctttcaaatc gatggcgggt atcagcagca taatttttct ccttgtgcgg ggccgtgtcc
     5221 ggcttaccag tttaaaaagt ttttcaacat cgtcagcccg gcatcgtggc ttttttcggt
     5281 gtgaaattgc gtggcgaata cgttgtcttt gccgacgatg caggcaaacg gggacgggta
     5341 gtcgctttcg cccaatatgg tttcgggatt ttcgggggcg aaatagtagc tgtggacgaa
     5401 gtaaaaacgc gtgtcttggg gaatatcttt aaacagcggg tggttttggg tttggcgcac
     5461 ggtgttccag cccatatgcg ggactttcag acggcatccc tgcgggtcgc ggaggtcgcg
     5521 ctcaaagcgt ctgactttgc cgccgaacca gcccaagccg tcggtgtttc cttcttcgct
     5581 gtggtcgaat aaaagttgcg cgccgacgca gattccgaaa aagggtttgt tttttaaggc
     5641 atctttgact gcctcgtcca agccgtcgcg cgtcagtgcc gccatacagt cgggcatcgc
     5701 gccctgaccg ggaaaaatga ctttgtcggc gcgggacacg cgttcggggt cgccgcttaa
     5761 aaagatttcg gtattttttc cggcaagctg ccccgccgtc cggacggatt tcaatacgga
     5821 atgcaggttg cccataccgt aatcgataat ggcgatttgc atggcttcct cctctttttt
     5881 tgcaatatgg ctgcgatttt aacaaacaaa tgtgccgtgc tgataaaaat gccgtctgaa
     5941 aacgggagtc tgtcttcaga cggcataggg tttaaacccg gaaagccgtt tgtcagcctt
     6001 ccatttgttt tgcctgaacg gcagtcaggg cgatggtgaa cacgatgtct tccaccagcg
     6061 cgccgcgcga caggtcgttg accggtttgc gcaggccttg cagcagcggg ccgacgctta
     6121 agacgttggc actgcgttgg acggctttat aggtgcagtt gccggtgttc aggtcgggga
     6181 agaccaaaac ggttgcctgt cctgccaccg ggctgcccgg agctttggat ttgcccacgc
     6241 ccggcacggt tgccgcatca tattgcagcg ggccgtcgat ggcgaggtcg gggcgttttt
     6301 cccgggcaag tttggttgct tcgatgacga tatcgacatc ggggccgctg ccggagttga
     6361 cggtggagta ggaaatcatc gccactttcg ggtcgatgcc gaaggctttt gcggaatcgg
     6421 cagactggat ggcgatgtcg gcaagctgtt gcgcggtcgg gttcggatta accgcgcagt
     6481 cgccgaagac gaggacttgg ttgggcagca gcataaagaa tacgctggac acgaggcttg
     6541 cgcccggtgc ggttttaatc agttgcaaag cggggcggat ggtgttggcg gtggtgtgaa
     6601 ccgcaccgga taccaaaccg tccacatcat tttgcgccat catcatcgta ccgagtacca
     6661 cggtgtcttg cagttgcttg cgcgcgtctt cgggtgtcag gcctttggat ttgcgcagtt
     6721 cgcacatcgg ctcgacgtat tgttcgacca atgaggcggg atcgatgatt tccaaagagt
     6781 cgggcaggct gatgccgcgt tctttggcaa cggcttcgac ttcttcgcgt ttggcaagca
     6841 ggacgcagcg ggcaatgcct ttttcgtggc agatggcggc ggcttggacg gtgcggggtt
     6901 ctgcgccttc aggcaggacg atgcgtttgt cggcttggcg ggcgaagtcg atcaggttgt
     6961 agcggaattg cgccggcgac aggcgttttg cttcgcggcc tgccaatacg gatacgtctt
     7021 tcagcgcgtc gctcgaaccg aagaaggtca ggccggtttt ttcggctgcc gcttcggcaa
     7081 cggaggctgc cgcgccgtcc acgacaaaac cttccaatac gcccggcgcg gcggcgaaga
     7141 actgtttggc aaggttcacc cgatttgcca gttcgtcggc atcggcgttg tcggaacgga
     7201 cggcgaagac ggctgccgcg tcaagggaca atgccagttc gacgtttttg cctgcgaggt
     7261 agattttgtc ggcatcgggc gcgatgcctt cgatgacgag gttggcggca tcgagtgcgg
     7321 caactttgcc gaccagtgcg tcgaaccagt cgtcgctttt gccttgcgcg agcagggttt
     7381 cggcggttgc gtcaacggct tggaaaattt gtgcgtccag tgcttttgca aaggcttgtg
     7441 cggcggcgga ggcgtccagt ccggcagata cgggtacgat gagtactttt gccatgatat
     7501 atcctttcgt atgctgcggt gtgcggcata tgtggttgga aggggcggca tataggcaga
     7561 aacggctgcc tgcgtgccgt gcgtgccgtg tttggcttga ggcgcgcagg ttgaatatag
     7621 caaacaaatt ctgtttccaa caagataaat atccgcaggc ttgtggatgc tgccgccttt
     7681 cagagggtat ttccggggaa gaacagggcg ggaccgtcca aatggaggac ggcggaaatg
     7741 ccgtctgaca gggtgggggc ggaagggagg ttgagcgtga ggacggtttg tccgacccgg
     7801 aggctgattt cggtatgccg cgctttgggc gtggttttga gaaccacggc gtgaatggag
     7861 gcggtgggtg cggaatgggg gtgaaggctg aactgttccg gacggatgag cagtgtgccg
     7921 cgtgtgcctg cgggtgcgcc gctttgaacg ggcaggcggc ccaatccgca atcggcggtg
     7981 ccgtcggcgt tgagcgcggc ggggaacacg atgccttcgc cgataaacag ggcggcatca
     8041 aggtcggcag gttgtcggta caattcgtga gggcttgcag tttggaggat gcgcccctgt
     8101 ttcatcacgg caatccggtc ggcgtattgc agggcttctt cgcggtcgtg gctgacgaaa
     8161 acggcagatt tgccgttggc gcgcagggcg gcaatcatgt cttcgcgaat ctggcggcgc
     8221 aactgttcgt ccagcgcgct gaagggttcg tccaacaaaa tcagttcggg atcgggtgcg
     8281 agggcgcggg cgagggcgac gcgctgttgc tgtccgcccg aaagttcgtg cggatagcgt
     8341 ccggcaagtt cggaaatgcc ggtcaattcc aacatagctt cgatgcgctg ccgctcttgc
     8401 gccgtcttgc ctttgccgtt gcccagcccg taggcggtgt tgcggtaaac ggtcaggtgg
     8461 gggaacagca caccttcctg tacgacataa cccaaacggc gttcgcggac ggggaggttg
     8521 gtatttttcg agaagatggt tctgccggaa agcgaaattt cgccaaaatc gggttgttca
     8581 aaaccggcaa ggcagcgtaa aagggtggtt ttgccgcagc cggacgcgcc gacgataaag
     8641 aggatttcgc ccgggtcgag gctgagcgaa atgtcgttta aaaccggggt gttttgaaaa
     8701 cttttggaca ggtgtccgat gtgcagggcg gcggtcatgg cggtacttcc tcaagctgtt
     8761 atttgaaggc gtatttcttc agcaggaata cggggatgcc ggaaaataat accagcatca
     8821 gcgcgtaagg ggtggcggcg gcgtattgtg cgtctgatgt gtattcccaa acggcggtgg
     8881 agagtgtgtg gacatcgtcg gtggtcagca gcagggtggc ggtcagctct ttcatcagtt
     8941 tgaggaagac gagtgcgaat gcggcggtaa tgccgggcag gatggacggc agtaccaacg
     9001 tcctgaaaat aaagaagtgt ccgcgcccca atgttgcgcc gacctgttcc atcccttttg
     9061 ggagttgttc caaggaagtc ctcagggtgg tttgcgccat cggcaggtaa agcatgaaat
     9121 aggcaaggat gacgacgata aaggtttggt aaacggcagg ggtgtagttg atgctgaaat
     9181 aaaccaagga tagggcgata accaaaccgg ggacggcgtg cagtaaaaac ggcagcctgt
     9241 ctatccaaac ggttaaaaaa ttgcgatagc gaaccgatgc ccaaacaagg ggcaaggcac
     9301 ataatatagt caaaatcgca cctaaagccg atacgcttaa ggaacggata aaggcatcaa
     9361 atacggatac gagcgcgaat gtgccggaag tgccgaccat catccaatgt atcaatacgc
     9421 caaaggggat aataatgccc aaagtcaaca agctgcttaa aaaaacaatc gcgccgatct
     9481 gaccgggcag tttgagggtt ttgacgggat aaggacgggc aacgcctttg ccgctgtggt
     9541 aaatcttggc tttgccgcga aatatgcttt ctccaaatac gacgatgccg cacaccgcca
     9601 ttaaaacagc ggaaagcagg gcggcggtat tgttgttgta ggacatttcg tattcttgga
     9661 aaatggcggt ggtaaaagtg gggtagttca aaatggatac cgcgccaaat tcgaccagca
     9721 tatgcagggc aatcagtaac acgctgctgc cgatggcggg tttgagctgg gggaggatgg
     9781 cggaaaaaaa ggtttgcagg cggcttttgc ccaaggacag gctgacttct tcgtaagaca
     9841 ggctgatgcg tttgagtgcc gcctcgacgg gcaggtaggc gagcgggaac gaggacaggc
     9901 tcataatcat cactgtcccc caaaagcctt cgacacggaa ggtcaggctg atccaggtga
     9961 aacagctgac aaatgcgggg atgcacaaag gcagggtgat tgccgtctga aaaaaggttt
    10021 tgccgaagaa gcggtaacgt tggaacaaaa gggcgcaggc aatgcccaaa acaatggaaa
    10081 tcagggtaac gcccgccatc atcgtcaagg tgttggagag caaatcccac atacgcgggc
    10141 ggaacaacag ttcgacggcg cggttgatgc cgacctgcca cgaacgcata gcgacatata
    10201 aaaaaggcag ggtaagcggt agggcaatca gtaggatgag gccggtaagc caaatgggta
    10261 tttttttagg agacatagtg ttttttatcg gcaaaacggg cggacagtat aaatgtccac
    10321 ccgtttgaca atccaaaaac ggcttatttc ataccggctt gctcaagcag ccgggtggcg
    10381 tgttcttttt cggaaacagt ggtggcggac acttggggtg cttccaactt ggcgatgggt
    10441 tccaaattga aggtggatac cacgtgcgga ttcaaaggat attcggcacg gacggcggtc
    10501 agggcacgct gtccttcctt gctggcgagg aaagcgacga attttttcgc ctcatccttg
    10561 ttttgggagg attttaacac ggctgcgccg gaataggtaa cgagtgcgcc gggatctctg
    10621 tggcggacga aattcaggcg ggtgtggaca ttttgtacgc ctttttcacg cgcgaaagcg
    10681 tgccagtagt agttgttgat gagggcggca tcgatttcgc cgttttcaac cgcttgaagg
    10741 gcgacggagt ttttagcgta aggcttgccg tattctttca gacctttgag ccatttcaat
    10801 gcggccgctt cgcctttcag tttgacgatg gcgacaacct gttccaagaa cgcgccggaa
    10861 gtgggggcgt aaccgatgcg gtttttccat ttcggcgtgg cgtaattcag gacggatttt
    10921 tccaaatctt tttcagacag tttgcgggtg tcgtaaacga cgacgcgcga acgtccgctc
    10981 agtgccaccc agtctttttt ggcggcaacc ggcacgccct tgccgcgtgt ttcgttgatg
    11041 gtggaggcgg gcaggggctc taggaggttg gctgcggaaa gggtggcgag tgccgggatt
    11101 tgttcggaat agaatacgtc ggcggggctt cggctgcctt cttctttgat ttgaccggca
    11161 agctggtcgc ctttggcgct gttgagtttg actttgatgc cggtagcccg ggtaaaggca
    11221 tctgcaacgg cttgtgctgc ttctttgtgt tgtccgttgt acacggtaat gtctgccagc
    11281 gcgggggttg cggcggtcag ggctgcggca agcagtgcgt atcggataga tgttttcata
    11341 tcgattttct cctaatgaat gagagtgtac accttgttaa gacataacgg cgtgtagtgt
    11401 attccttctt ctttataaat gcaaataatt attttttaaa tttgttatta tccgatccgg
    11461 ttatggtttg ttctgacttg tattttttcc gtgcatcgcg cccgtaaggc ggaagtggcg
    11521 ggcaatgcgt ggcggaatgt gggtaaaggc ggcattttga tttgtcggaa tgcttgagaa
    11581 cccctctctt taaaacaccg tctgaacagg gttgctggaa tagtattgcc atcccagcag
    11641 atacagtttg tcggggtctt gccaatattg ttcatccaga ctgttcggca gtgaggcggt
    11701 tttgttgtcg agatgttata tcccacattt ctttcaggtt tttaccttcc gattggaggc
    11761 ggcggatttc tttgtccaat gcgtctgccg cccgatggat cagcattgcg ctgtgtatcg
    11821 cgccgatttt tttcagaacg gaactagtct tttcggcggc gggaaaacac cagttgcaga
    11881 caaattgcag tatgccgccg ttaccgatgt cggcttccgc ccgccaaatc aaaaccagct
    11941 cctgttcccg tccgtccatg ctttcgagtt tgccgttatg ctgttcaaaa agtttgtcca
    12001 ccgcctgcca catcatctgc tcgaagcggt cggcttgggt atccgtatcg gtcatcgtgt
    12061 tcttgccttt taaaaatgcc gtctgaacat ttcttcagac ggcatttggg ggttaagcca
    12121 acatttcccg ccagcgtttc acttggaagc ggacttgttc cggcgcggta ccgcccaagt
    12181 ggttgcgggc gtttaagctg ccttcgggtg tcagcacgcc gtaaacgtcg tcggcaatca
    12241 aatcgctgaa accttgtaag acttcgagcg gcagttcgct caaatcgacg cccgcttggt
    12301 cggcgtggcg cacggcttgg gcgacgactt cgtgggcatc gcggaaaggc atgccttttt
    12361 tgaccagata atccgccaag tcggtggcgg tagcgaagcc ctgcatcacg gcggcgcgca
    12421 tattgtcggg tttgacggtt acgccgcgca tcatatcggc gtaaatccgc aacgtgtcga
    12481 taagcgtgtc ggcggtgtcg aacaagggtt ctttgtcttc ctgattgtct ttgttgtacg
    12541 ccaagggttg ggatttcatc agggtaatca gaccgataag gtgtccgatg acgcggccgg
    12601 atttgccgcg cacgagttcg ggcacgtcgg ggtttttctt ctgcggcatg atggacgaac
    12661 ctgtgcagaa acggtcggcg atgtcgataa agccgaaacg cggactcatc cacaaaatca
    12721 attcttcaga caggcggctc aggtgaacca taaccagcga ggcggcggcg gtgaactcga
    12781 tggcaaaatc gcggtcggat acggcatcga gcgagttttg gcagatttgt tcaaagccca
    12841 acagttcggc ggtgatttcg cgccgaatcg gataagtcgt accggcaagg gcggctgcgc
    12901 cgagcggcat acggttgacg cggcggcggc agtccgccat ccgttcgtta tcgcgtccga
    12961 gcatttcgac gtaggcgagc atatggtgtc cgaagctgac gggctgggcg acttgcaggt
    13021 gggtaaagcc tggcatgacg gtttcggcgt tttgttccgc caaatccagc aatgccgtct
    13081 gaaggctttg aatcaggctt cggatgacgg taatctggtc gcgcagccaa aggcggatgt
    13141 cggtggcgac ttggtcgttg cggctgcggc cggtgtgcag gcgtttgccc gcgtcgccga
    13201 ttttgtcggt caggcggcgt tcgatgttca tgtggacatc ttccaaatcg gacgaccatt
    13261 cgattttgcc gctgcggatt tcttcgagga tttccgccat accccgacgg atgtctgcca
    13321 aatcgccttc gtccaacacg ccggtttctt tcaacatttg cgcgtgtgcc agcgagcctt
    13381 gaatgtccca ttcggcaagc cgtcggtcga aaccgatgga ggcggtgtat tgtttgacga
    13441 gttcggaaac gggttcgttg aaacgtccgg accaggtttt gtcgtgcata aggattcctt
    13501 gatggggtta ttcggtacgg tatttttcca aaaggcggcg gaagggttcg ccggtttcgg
    13561 ggtgtttcag accgtaggcg acggtggctt cgaggtagcc cagtttgctg ccgcagtcgt
    13621 agcgcgtgcc ttcaaagggg tgcgccagga caaattcgtg atcgagcagc ttggcgatgc
    13681 cgtctgtaag ctggatttcg ttgcccgcgc cgcgcggcag tccggtcagt aagtcgaaaa
    13741 tgcgcggggt gaggatgtag cgtccaacaa cggcaaggtt ggagggcgcg tcttcgggct
    13801 tgggtttttc gacaatgccg gtaatgcgtt ggaactgttt gagctgttcg gtttcgacga
    13861 tgccgtatga gccggtttgc gatgcttcaa cggtttctac gcccaaaatg ctgttgccgc
    13921 tgcgcccgta cacttcgacc atttgtttga gcgcgccttt gggggcatca atcaggtcgt
    13981 cggcaaggat aacggcaaag ggttcgtctc cgatggcggc gcgggcgcac aagacggcgt
    14041 gtcccaagcc cagtgcttcc gcctgacgga tgtagaggca ggtaatgttc ggcggcagga
    14101 tgttgcggac gtgttccaac aatttgtctt tatggcgcat ttccaactcg gtttcgagtt
    14161 cgtatgcctt gtcgaaatgg tcttcgatgc tgcgtttgtt gcgtccggtt acaaacacca
    14221 tttccgtgca gccggcttcc acggcttctt ccacggcgta ttggatcagc ggcttgtcga
    14281 cgatgggcag catttctttc gggcttgcct tggtggcggg caggaagcgg gttcccatcc
    14341 ctgcgacggg gaagacggct ttccgtatgg gtttcattct ttttcctttg tattgttttg
    14401 atgtttaaag ggcgagtttg cgtaagagtt cggcaagtgc ctgcgcgcgg tggctttcgc
    14461 ggtttttgac ctccgaatcc aattcggcgg cggttttgcc gtgtccgggc agataaaaat
    14521 acgggtcgta accgaaaccg ttttcaccgg cgggaacgcc gttccattgt ccgtgccata
    14581 cgccttcggc aataatcgga cgcgggtcgt ctttatggcg gacaaaaacc aatacgcaga
    14641 cgtagcaaca gcttttgtcg gctttgccga caagttcggc ggcaagtttc aggttgttgg
    14701 cggtatcgga tttgggatgg tcgcccgcgt aacgtgcgga atgtatgccc ggtgcgccgt
    14761 ttagggcggc ggcacagatg ccgctgtcgt cggcgagtgc gggcagcccg ctgtattcgg
    14821 cagcatggcg tgcttttgcc agcgcgtttt cgacaaaggt ggaatagggt tccggacatt
    14881 cgggtatgcc gaactcggat tgcggcaata cggtgatgcc gtaaggtttg aataggttgc
    14941 cgaactcttc gagcttgccg acattaccgc ttgccaaaac gattttttcc ggtttttcag
    15001 acatagcggt tttcctttgc ggcggattgg gcggcgtgta gggatttgtg ccgcaaatag
    15061 agggcgagtg cgccgatttg tccgaacagc gcgccgaatg cgaaaaggaa ggcggcgacg
    15121 gcaaaggctt tgctgccggc ggtcagcaga taagcaccca agaggacgag cagcataaat
    15181 gccagtgtga acagggcaac agacaacaga tagatttttc ggcggttcat ggcgttcggt
    15241 cggaaacggt atgttcggat tatatccgat tgggacggta ttccctagag cttggaaaaa
    15301 tgccgtctga agcggctttc agacggcagg gcaggcggat gttatgcctg tttgttccaa
    15361 cgttcgatgg attctttaat aacttttttc gcttcttccg catcgcccca ggattcgact
    15421 ttggtcgtac cggctttttt caggtctttg taatggttga agtggaactc gatttgtttg
    15481 atgagctgct gcggcaaatc ggacaaagtt ttgtaggcgt tgccgttgtt gcggtcgtcg
    15541 gcaggaacgc agacgatttt gtcgtctact tcgccgtcgt caacgaattt catcacgccg
    15601 ataacgcgcg cttccaagaa tacgccggtt gccagaggtt gttcggtaac gagcagcacg
    15661 tccaattcgt cgccgtcttc gtccaaagtt tggggaatga agccgtagtt ggtcggtttg
    15721 gcgaagatgg cgggttcgac gcggtcgagt tggaatgcgg cgagtttgcg gttccactcg
    15781 attttgtggt tgctgccggc ggggatttcg ttgacgacgt tgatgatgcc gccgtccacg
    15841 tcgccggggg tcaggatttg gttgaagtct gccatttggt ttcctttatt tgggaaagtt
    15901 tgaagtttga aagtatagca caaacgtccg gctgaaaatg cgcccgatgc cgtctgaaag
    15961 ggtgtacggg cgcgtgttac cgtttgccca aaaacctgcc cagttccaga atcgcgcgcc
    16021 tgttggacgg ggaaaacact ttttccgccg cttcttccaa gccgaaccag ccgtaggaga
    16081 cgtgttcctc gggttgcagg acgacgggcg tatcgcgcgg gatttcggca gagaagaggt
    16141 gttcgcggtt ttcaaacacg ccttttggat agcggtgccg ccagtggtgg tagatttcgt
    16201 aaaccgtgct gtcgtgccag tcttgaagct gcccgtccgc cagcaggatg ccggtttctt
    16261 cccaaacttc gcgccttgcc gtttgggcga cggtttcgcc cggttcgagg ctgccggtta
    16321 ccgactgcca aaatccttcc ggatgcgtgc gttcgatgag caggatgccg ccgtccccgc
    16381 tataaaggac gaccagtgcg gaaacggggt atttgagcgg ttttgccatc ggcatctttc
    16441 ggcgggctgc ggtaatgaag gggcggatta tagcaaacgc cgcacgttat ggcgtttatc
    16501 cttttccgta tccttttttc tgcacggatg ggacgcgccg gtgtttgccg gtaaattttc
    16561 cgttgtgtca aaaagataag ggcggttgtg attttaatgc ttgccaaagc gtcgggcgga
    16621 aactataatc cgaaacttat cgagtcggag tgtggcgcag tctggtagcg cacttgcatg
    16681 gggtgcaagg ggtcgaaggt tcgaatcctt tcactccgac caaaaattcc gaaagccgct
    16741 ttcaaaagcg gcttttttgc cgtccgtatg attatgatgt agagtacgcg gcgacagaca
    16801 ttcaaatgcc gtctgaaaac cgttcagatg gcatctcttt atcttagttt cattccgtac
    16861 catcttaagg aacatcaaat tgggcatttc ccgcaaaata tcccttattc tgtccatact
    16921 ggcagtgtgc ctgccgatgc atgcacacgc ctcagatttg gcaaacgatt cttttatccg
    16981 gcaggttctc gaccgtcagc atttcgaacc cgacgggaaa taccacctat tcggcagcag
    17041 gggggaactt gccgagcgca gcggccatat cggattggga aacatacaaa gccatcagtt
    17101 gggcaacctg atgattcaac aggcggccat taaaggaaat atcggctaca ttgtccgctt
    17161 ttccgatcac gggcacgaag tccattcccc cttcgacaac catgcctcac attccgattc
    17221 tgatgaagcc ggtagtcccg ttgacggatt cagcctttac cgcatccatt gggacggata
    17281 cgaacaccat cccgctgacg gctatgacgg gccacagggc ggcggctatc ccgctcccaa
    17341 aggcgcgagg gatatataca gctacgacat aaaaggcgtt gcccaaaata tccgcctcaa
    17401 cctgaccgac aaccgcagca ccggacaacg gcttgccgac cgtttccaca atgccggtag
    17461 tatgctgacg caaggagtag gcgacggatt caaacgcgcc acccgataca gccccgagct
    17521 ggacagatcg ggcaatgccg ccgaagcctt caacggcact gcagatatcg ttaaaaacat
    17581 catcggcgcg gcaggagaaa ttgtcggcgc aggcgatgcc gtgcagggca taagcgaagg
    17641 ctcaaacatt gctgtcatgc acggcttggg tctgctttcc accgaaaaca agatggcgcg
    17701 catcaacgat ttggcagata tggcgcaact caaagactat gccgcagcag ccatccgcga
    17761 ttgggcagtc caaaacccca atgccgcaca aggcatagaa gccgtcagca atatctttat
    17821 ggcagccatc cccatcaaag ggattggagc tgttcgggga aaatacggct tgggcggcat
    17881 cacggcacat cctatcaagc ggtcgcagat gggcgcgatc gcattgccga aagggaaatc
    17941 cgccgtcagc gacaattttg ccgatgcggc atacgccaaa tacccgtccc cttaccattc
    18001 ccgaaatatc cgttcaaact tggagcagcg ttacggcaaa gaaaacatca cctcctcaac
    18061 cgtgccgccg tcaaacggca aaaatgtcaa actggcagac caacgccacc cgaagacagg
    18121 cgtaccgttt gacggtaaag ggtttccgaa ttttgagaag cacgtgaaat atgatacgaa
    18181 gctcgatatt caagaattat cggggggcgg tatacctaag gctaagcctg tgtttgatgc
    18241 gaaaccgaga tgggaggttg ataggaagct taataaattg acaactcgtg agcaggtgga
    18301 gaaaaatgtt caggaaataa ggaacggtaa taaaaacagt aactttagcc aacatgctca
    18361 actagagagg gaaattaata aactaaaatc tgccgatgaa attaattttg cagatggaat
    18421 gggaaaattt accgatagca tgaatgacaa ggcttttagt aggcttgtga aatcagttaa
    18481 agagaatggc ttcacaaatc cagttgtgga gtacgttgaa ataaatggaa aagcatatat
    18541 cgtaagagga aataataggg tttttgctgc agaatacctt ggcaggatac atgaattaaa
    18601 atttaaaaaa gttgactttc ctgttcctaa tactagttgg aaaaatccta ctgatgtctt
    18661 gaatgaatca ggtaatgtta agagacctcg ttataggagt aaataaaaat ggcaatttgg
    18721 aattatcggt actaccttat cccatcagct gctatcagaa ataaatttaa tgcaaataaa
    18781 gatatcatac ttgatgagta tcgatctaat ggttttcaga attttaatga gaataaaagt
    18841 tttgaaaatt actttatcga taatgatgtt atattattat caataataaa tgaagcaaaa
    18901 aaacagctta aattgaaaga atcttgggat aaagacgcaa tcatgttttg tgataatttt
    18961 ggtaatagtc ttaccgtttg gccagatgat atagagtgcg aacttgattt aagatttgat
    19021 tatactaaat ttattcagaa aaccattgat tgggcaataa aatataattg tctacttgta
    19081 atagaaaaaa caggaaatgt agtttcccct aatataaata atctgatgta tgaaataaaa
    19141 gcatatttgg aaagcaagcc gtggcccata tgaaacctaa actcaacaag taggatgtgt
    19201 gcggaacgca cgtatgcggt tctcaaggtt tgagctaaga ggccgtctga aaacagaaaa
    19261 actgtttcag acgacctttc ttttaaccag ttgccacagc aaccggacaa aagcagccta
    19321 cctccacatc catataggca atacagggga gatattttgt aaattctacg aatattttac
    19381 ctgctaaaca gggtaggata tggtatgaag cgaacattgg cttaataaac actatgtcaa
    19441 gatcgaatca ggctggtact agattgttgt attccaatta tggattgcta tatataacaa
    19501 ctgatcatta tatctctgca acacggtttg tagcttggaa ataggagtat aacttatgca
    19561 attagagatt atcggtagta aaatttatac ggaacaagat tttcataatc aaatttcaaa
    19621 aatattttct atacaagatt attatgggaa caatcttgat gctttatggg atttattaag
    19681 cacaaatgta gaacgaccga ttactttggt atggaaagat gctatgttct caaaaaatca
    19741 attagaaaat atatttattg aaatcgtaaa tgttctagaa agagttaaga aacaagatga
    19801 ggattatgga ttcgaagaaa aatttaatta tattttagag taagtaaacc ctaattacat
    19861 tacgtacaca ggcttaaaac tccccagggc caattaagca agccgtaacc catataaaac
    19921 ttaaactcaa caagtagcat gtgtgcggaa cgtacgcatg cggttcttaa agtttgagct
    19981 aagaggccgt ctaaaaacag aaaaaccgtt tcagacggtc tttgtttaac gccaccgatc
    20041 cagcgggtta caaagcgcag tcaatgccgc tgcgccttat gcctccgaag caataggcag
    20101 aacatttgga cacggtgaaa acaaaaacga aaccgcccaa gccgttggac atttcctttt
    20161 aggagcagct attgcccgcg tcaacggtgg taattttgct gccggcggct cggcagcagt
    20221 tgcagctgaa aaggcggcgg aacatcttgc ccaacagtat aacgacggta aaaccgcaat
    20281 cgatccgcaa acaggcgagt tcaatgccaa cctgctgccg gaacatatca aagaggaaat
    20341 caaatcaaag agcggggtga ttgcatcgct gacgggcgcg gccgtgggcg gcacgccggt
    20401 agatgcgcaa accggaggtg cggtcggaca gaatgcggtg gaaaacaacc tctatctgac
    20461 atcggaagcc ttaaagaagg acaagcagac agctcgtaaa atttattccg tcataaaaga
    20521 gcaagtcaag catgaatgca gttccacagg aagaattacc gaatgtcgtc aaaatatagg
    20581 acgcattatc gaatttaccc aagacaaacg ctttgacagt aggtttaagg acttaaaaaa
    20641 agaatcctta tattacctaa ataaacatcc tgatttagta gcctcttatt tgaaggctga
    20701 atacgaaaag ctggataggg aagacaaaag tatcctgcac cgctacatct cacccggggc
    20761 tgaaatcgtt tcgggcagtt tgggggttgt tctttcagga gtagccggag gcggatcttg
    20821 tgccgagact ttcggcttag gctgtgccgc cgctttggtt ggtgtaacgt cttcctacga
    20881 tcatgtcatt actgggacga aaaacttcgg aaaaaaagcc agcgagcaac gaccgacgat
    20941 tgcggttcag gccttgaagc agttggggct gtcggagcag gctgcggaat atgttcagtt
    21001 ctctatagat ttgttcagtg tgggtaaatc ggggggcggt atacctaagg ctaagcctgt
    21061 gtttgatgcg aaaccgagat gggaggttga taggaagctt aataaattga caactcgtga
    21121 gcaggtggag aaaaatgttc aggaaacgag aagaaggagt cagagtagtc agtttaaagc
    21181 ccatgcgcaa cgagaatggg aaaataaaac agggttagat tttaatcatt ttataggtgg
    21241 tgatatcaat aagaaaggca cagtaacagg agggcatagt ctaacccgtg gtgatgtacg
    21301 ggtgatacaa caaacctcgg cacctgataa acatggggtt tatcaagcga cagtggaaat
    21361 taaaaagcct gatggaagtt gggaaatgaa aaaaggaagg ggcggaaaac ctatgacaaa
    21421 tcattctatg ttcccaaaag attgggatga ggctagaatt agggctgaag ttacttcggc
    21481 ttgggagaaa agaaaggaat tagaaggtca aaaatggaga ggtacaagta aatctggtgt
    21541 tgaaatagaa ggatttacgg aacctaatcg aacagcttat ccactttata atagtaaatg
    21601 aagtattgat taaaaaggtg tttttaaatg tataaaataa aatgttttta tgatcagttt
    21661 agttctggtg aattatttaa ctactgccag tttttagata attcttctaa tcaaaagata
    21721 aatacacgag gaacggtgta tcaatatatt atttatgttt taacaggaga cctttatcta
    21781 caaaaagaca tagatgaaaa tttagaattt atccatcaag cagaaaataa tcccaatgaa
    21841 gtttattcag gaggtggaca aggtttttgc tgggatattt ctgctgaaaa agtagttttc
    21901 tatcacaacg aatttgatga agaagacggc tggcctgatt taagctgttc gctgcatact
    21961 tttaaaactg ctttaattgc ttggaatgct tttttgcaat tgcctaaaag tattcattcg
    22021 gtggtggaga ctgtgattga ggaataagca taattagctt aatgaataga atcagcgata
    22081 tagattggac tgcaaatcca cgcttatacg ctgtgccatg attaacagga agagagcaac
    22141 ttggatgggc tagtagggat ggtaagcatt taaatatatc aattgatgga aagattacac
    22201 acaaatgact aatttaaaat tagatttcta ctctgaagtt attataaaag attcttgccc
    22261 taatgatttg ttagaaaatg gtgagactat taaaggaaaa aaaggagtgg tattaggtat
    22321 aagcgaagaa gatggtataa tctatggcta tactatttta ctttttgata taaaatattg
    22381 tatatatata gataagaaat atattatacc gactggaaaa aaattctctc gcgatgattt
    22441 ttattagcta atttaagtaa tttaagcaag ttttttagat actgaaactg gtaattatgt
    22501 ttatgtaagc ataaggagtt cagattgaag gattctacag ggcaaatgag gctggcaacc
    22561 aaggatttgg cggaagccat taaacgagga gaagtacgta gttctgcttt tacaacaaag
    22621 caactaaagg caatcgaaaa aggagaatct aaaataccgg attacacttg gcatcatcat
    22681 caagacactg gaaggatgca attgattaat gaagacttgc atcatgatac cggccatatc
    22741 ggttggagag cgatgagtaa aggaaagtaa ctatgtggaa aatcataaaa gaggatagtg
    22801 atgatttagg atttgcaatt aaatgcttat tctctcaatc tattgattta aatgaattca
    22861 aattatggat tgaacaagta atacgcgata tgcccattga ggacatccct ttttatattt
    22921 ttgatttggc ggatttggat gaagaaattg ataatattta caatatcata ggttttgttt
    22981 cgagttacag cttatcaaaa ttgagaagaa atgccttaac aggcattgcc ttcttaaggg
    23041 ggatagatgt ctatgaccct cccgtttcaa aagaaaaagc attaaaagcc ttagagaaat
    23101 atcctgaaat ttatcagaaa tttcagcatt tctttccgtt tgtagagctg ccgccgcttt
    23161 aaacagtcaa aatgccgtct gaaagccatt tccgccgctc agacggcatt ttcgcccctt
    23221 ttgtttacaa acccttaaaa tccctttaca ctcaaaatcc gttcaacatc aaacaaaccc
    23281 cgctatgaaa accctgctcc tcctcatccc cctcgtcctc acagcctgcg gcacactgac
    23341 cggcat
//
LOCUS       DAXHPV010000015        22957 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.015, whole genome shotgun sequence.
ACCESSION   DAXHPV010000015 DAXHPV010000000
VERSION     DAXHPV010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 22957)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22957)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22957
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.015"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(160..1860)
                     /gene="recJ"
                     /locus_tag="ACFM6C_000414"
     CDS             complement(160..1860)
                     /gene="recJ"
                     /locus_tag="ACFM6C_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008409 - 5'-3' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HFC6157923.1"
                     /translation="MSVKIQTRSINTDVFNHLLTAGADPLIARLCASRGVQSPAELDD
                     KLASLLPYQSLTNCEAAAGRLADAVERQEKILIVADYDADGATACAVGLDGLAAMGAK
                     VDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVDNGIASIAGVARAQALGLDVIVTD
                     HHLPAETVPDCIIVNPNQKGCGFPSKSLAGVGVIFYVLMALRAELRRRNYFSDGIKEP
                     NLGELLDLVALGTVADVVPLDHNNRILVSQGLKRMRSGKMRPGIRALFEVARRDWRKA
                     QPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQELAAQLNNLNIERREIEQSM
                     LQDALNAFPETLPSGQTALAVYRDDFHQGVVGIVASRLKDRFYRPTIVFAPADNGEVR
                     GSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILEHNIPAFQTAFEEAVRE
                     MVCEDDLSQTFITDGSLKACDITLEQAQNLARHVWGQGFAPPSFTDEFHVVRQQPLGA
                     EGKHKKAWLQKDGCEFEAMFWRCSEDIPEYIRTVYRPVANEWRNNLELQLYIDYWEAV
                     "
     gene            complement(1929..2645)
                     /locus_tag="ACFM6C_000415"
     CDS             complement(1929..2645)
                     /locus_tag="ACFM6C_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157924.1"
                     /translation="MLFRKTTAAVLAATLMLNGCTAMMWGMNDPFSQTTAYKHVDKDQ
                     IRAFGVVAKDNAQLEKGSLVMMGGKYWFVVNPEDSAKLTGILKAGLDKPFQIVEDTPS
                     YARHQALPVKLESPGSQNFSTEGLCLRYDTDRPADIAKLKQLEFKAVELDNRTIYTRC
                     VSAKGKYYATPQKLNADYHFEQSVPADIYYTVTKKHTDKSKLFENILHTPPLLILDAA
                     GAVLALPAAALGAVVDAARK"
     gene            complement(2692..3198)
                     /gene="yjgA"
                     /locus_tag="ACFM6C_000416"
     CDS             complement(2692..3198)
                     /gene="yjgA"
                     /locus_tag="ACFM6C_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis factor YjgA"
                     /protein_id="HFC6157925.1"
                     /translation="MFEQEDEWISKTQMKKQMNGLQDLGMELTKLSNDTLKKIGLDED
                     LYEAVVTYKKITSNGALKRQAQFIGRLMRDTDPAPIEAFLAKLRGDDAVHNAFLQRVE
                     QARVRLLADDGALTQFMSDFPHADAGKLRTLVRNTKKEQEQNKPPKNFRALFQELKTV
                     MENGDAEI"
     gene            3352..4683
                     /gene="pmbA"
                     /locus_tag="ACFM6C_000417"
     CDS             3352..4683
                     /gene="pmbA"
                     /locus_tag="ACFM6C_000417"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HFC6157926.1"
                     /translation="MLFNHTASELLDLCRRTLDLAKATGATAAEADFSESLGQSVSVR
                     LGEIEQIEFQQDKSLDITVYVGKRKGRASTADFSEKALQDTVKAAIDIARYTAEDDCA
                     GLADASLMAQHIGDPDLYHEWDLDTEAAVGLAKQCEQAALNEDERIENSEGAAVQTGH
                     YQYVYGNTHGFATHRQGTHHSISCSVVAADENGMQRDYWYDSACRHPDMDSPETIGQT
                     AARRTLRRLGSRSIPTGSYPVLFDTTVSGGLIGHLVGALSGGALYRQSSFLIDSIGKK
                     VLPDFLNLREEPHIPRSFRSSYFDAEGVATAPRFVIQNGIVKGYFLSSYSARKLGMQT
                     TGNAGGAHNLYLNHTHETQSDLLKEMGTGLLVTELMGQGANTITGDYSRGAAGFWVEN
                     GVIAYPVHEITVAGRLQDMYRDIVGVADDALRRSSNKIGSILIAGMTVAGS"
     gene            complement(4980..5183)
                     /locus_tag="ACFM6C_000418"
     CDS             complement(4980..5183)
                     /locus_tag="ACFM6C_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HFC6157927.1"
                     /translation="MATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFKTLKE
                     GQRVSFDVTTGPKGKQAANIQAA"
     gene            5426..5728
                     /gene="clpS"
                     /locus_tag="ACFM6C_000419"
     CDS             5426..5728
                     /gene="clpS"
                     /locus_tag="ACFM6C_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HFC6157928.1"
                     /translation="MTAQHQSDTLLHRLNTLPPKRYGVFLLNDDYTTMEFVVEILTEI
                     FMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQTKQQQVMQRAKAEGHPLQCIVEEI"
     gene            5730..8027
                     /gene="clpA"
                     /locus_tag="ACFM6C_000420"
     CDS             5730..8027
                     /gene="clpA"
                     /locus_tag="ACFM6C_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0043335 - protein unfolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpA"
                     /protein_id="HFC6157929.1"
                     /translation="MLAPELEQILQQLYREARKAHYEFISLEHLLLVLIEEDAAVPNV
                     LKLCGADLKVVSEQLAASVAENTPLIPEHLLDTVETRPTLGFQRVMQRAMVHTQSAGK
                     AAVEPLDVLVALMSETDSHTVYFLKLQSVTRFEVLRCIAHGSPDEDEDEDDGNYSSDG
                     MDDDNENRTKPGKNPLSEYTVNLNAEVKAGRIDPLIGRKHEMERLVQILCRRRKNNPL
                     LVGEAGVGKTALAEGLAHQIVNGDIPDALKEAEVYALDMGSLLAGTKYRGDFEARVKS
                     VLKQLEKIPHTILFIDEIHTIIGAGSTSGGTMDASNLLKPALAKGSLRCIGATTYDEY
                     RTIFDKDHALSRRFQKIDVVEPTVAETVQILRGLKPMFEDFHQVRYTQGALEAAAELS
                     ARYINERFLPDKAIDVMDEAGAAQRILPKSKQKKVIGKAQIETVIAKVARIPEKTVSH
                     DDKQVLQFLGRDLKNMVYGQENAIDALVAAVKMSRSGLALPDKPIGSFLFSGPTGVGK
                     TEVAKQLAYSMGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAVNKQPHC
                     VLLLDEIEKAHPDIFNVLLQVMDAGRLTDNNGKSADFRNVILIMTTNAGAESLSRPSL
                     GFTANRERGDEMQAINKLFTPEFRNRLDAIIPFAPLSEPIIAKVVDKFLLQLEHQLLD
                     KKVEAEFTPALRKYLAEKGFDPQMGARPMHRLIQEKIRKPLADELLFGKLADGGFVRI
                     DWDAAKEEAVLKFKKNKVKPEAEPV"
     gene            complement(8075..11173)
                     /locus_tag="ACFM6C_000421"
                     /pseudo
     CDS             complement(8075..11173)
                     /locus_tag="ACFM6C_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581497.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009035 - type I site-specific
                     deoxyribonuclease activity [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
     gene            complement(11204..11313)
                     /locus_tag="ACFM6C_000422"
                     /pseudo
     CDS             complement(11204..11313)
                     /locus_tag="ACFM6C_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(11358..11954)
                     /locus_tag="ACFM6C_000423"
     CDS             complement(11358..11954)
                     /locus_tag="ACFM6C_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HFC6157930.1"
                     /translation="MVWKTLGEVFDLKNGYTPSKSNKEYWENGSIPWFRMEDIRENGR
                     ILDNSLKHISKSAVKGGKLFPAKSIMMSTTATIGEHALIKVNYISNQQLTNFTIKDEF
                     KDALDINFAFYYFFIIAEQSKKLINTSSLPIISMKELKKLKIPIPPLPEQEKIAAILD
                     KFDTLTHSISEGLPHEIALRRKQYEYYREQLLAFPKAT"
     gene            complement(11984..12577)
                     /locus_tag="ACFM6C_000424"
     CDS             complement(11984..12577)
                     /locus_tag="ACFM6C_000424"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HFC6157931.1"
                     /translation="MDMQSKAKKLIEMIQTAPVEWKPLGGENGIAIIKTGQAVSKQKI
                     SNNIGSYPVINSGKEPLGYIDEWNTENDPIGITTRGAGVGSITWQEGRYFRGNLNYAV
                     TIKNRTELDVRFLYHILLEFEQEIHALCTFTGIPALNASNLKKLLIPIPPLETQQKIV
                     KILDKFTELEAELALRKRQYRYYRDFLLDFDNQIGGG"
     gene            complement(12743..13753)
                     /gene="rhuM"
                     /locus_tag="ACFM6C_000425"
     CDS             complement(12743..13753)
                     /gene="rhuM"
                     /locus_tag="ACFM6C_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RhuM family protein"
                     /protein_id="HFC6157932.1"
                     /translation="MSIILYTANDGTAQFALQEFGGQLWLTQADMAELYQTTKQNISK
                     HIKTILAEQELEEKATVNFQLTVQNENGRKVNRKIAHYSLPMIIAVGYRVRSARGIQF
                     RQWATERLDEYLTKGFAIDDERLKGTGGGDYWKELLNRIRDIRSSEKALYRQVLDLYA
                     TSQDYNPKSSESQTFFAAVQNKLHYAASRQTVAELIYSRADSSKDFMGLTTFQGAIPT
                     LNEAKIAKNYLTEDELFRLNRLVSAFFDLAEIKAQEQSPMYMRDWIAELDKFSGLYGQ
                     GTLQGAGSISRKQAEQKAEREYRAYEARILSPVEQAYLESVKALEKTAVQQIKQKKDR
                     TK"
     gene            complement(13750..15294)
                     /locus_tag="ACFM6C_000426"
     CDS             complement(13750..15294)
                     /locus_tag="ACFM6C_000426"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0009007 - site-specific
                     DNA-methyltransferase (adenine-specific) activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HFC6157933.1"
                     /translation="MMTEMQQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI
                     SENFTDYMQAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNE
                     ELNTKLKEIFTAIESSASGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGV
                     AELDFGSFEDHHIDLFGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEK
                     VNKIYDPACGSGSLLLQAKKQFDEHIIEEGFFGQEINHTTYNLARMNMFLHNVNYNKF
                     HIELGDTLTNPKLKDSKPFDAVVSNPPYSINWIGSGDPTLINDDRFAPAGVLAPKSKA
                     DFAFILHALNYLSGRGRAAIVSFPGIFYRGGAEQKIRQYLVEGNYVETVIALAPNLFY
                     GTGIVVNILVLSKHKDNTDIQFIDAGGFFKKETNNNVLTEEHIAEIVKLFADKADVPH
                     IAQNAAQQTVKDNGYNLAVSSYVEPEDTREIIDIKQLNAEISETVAKIERLRREIDEV
                     IAEIEA"
     gene            complement(15367..16371)
                     /gene="rfaD"
                     /locus_tag="ACFM6C_000427"
     CDS             complement(15367..16371)
                     /gene="rfaD"
                     /locus_tag="ACFM6C_000427"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008712 - ADP-glyceromanno-heptose
                     6-epimerase activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HFC6157934.1"
                     /translation="MTIIVTGAAGFIGSNIVKALNQRGITDIVAVDNLSKGEKFKNLA
                     ECEIAHYLDKHEFIRQVREHILPYQNIEAVFHQGACSDTMNHDGLYMMENNYQYTLDL
                     LDWCQDERIPFLYASSAAVYGKGEIFREERELEKPLNVYGYSKFLFDQVLRRRMKEGL
                     TAQVVGFRYFNVYGQHEQHKGRMASVAFHHFHQYREHGYVNLFGSNDGYGNGEQTRDF
                     VSVEDVAKVNLYFFDHPELSGIYNLGTGRSQQFNELAAATVNACRAAEGKPEMSLKEL
                     VEEELIRYIPFPDALKGKYQSFTQADITKLREAGYTEEFFDVKSGVERYVKWMLENLA
                     "
     gene            complement(16412..17531)
                     /locus_tag="ACFM6C_000428"
                     /pseudo
     CDS             complement(16412..17531)
                     /locus_tag="ACFM6C_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221166.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
     gene            complement(17533..18767)
                     /locus_tag="ACFM6C_000429"
                     /pseudo
     CDS             complement(17533..18767)
                     /locus_tag="ACFM6C_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221168.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
     gene            complement(18804..19775)
                     /gene="hldA"
                     /locus_tag="ACFM6C_000430"
     CDS             complement(18804..19775)
                     /gene="hldA"
                     /locus_tag="ACFM6C_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-heptose synthase"
                     /protein_id="HFC6157935.1"
                     /translation="MPAKFQQETLKSRFAQAKVLVVGDVMLDRYWFGDVSRISPEAPV
                     PVAKIGRIDQRAGGAANVARNIASLGGRAGLLSVTGDDEAADALDALMVQDGVASYLM
                     RDKQIATTVKLRVVARNQQLIRLDFEEHPNREVLEQIKRKYREILPEYDAIIFSDYGK
                     GGLSHISDMIDWAKHEGKTVLIDPKGDDYEKYVGATLITPNRAELKEVVGSWKNEGEL
                     TEKAQNLRRHLDLTAILLTRSEEGMTLFSEGEPIYQPTRAQEVYDVSGAGDTVIAGVG
                     LGLAAGYTMPEAMYLANTAAGVVVAKLGTAVCSFAELTKALSGQSTM"
     gene            complement(19831..20571)
                     /gene="pyrF"
                     /locus_tag="ACFM6C_000431"
     CDS             complement(19831..20571)
                     /gene="pyrF"
                     /locus_tag="ACFM6C_000431"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003756133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0044205 - 'de novo' UMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HFC6157936.1"
                     /translation="MNPLISDFQTPQQRTPVIVALDFANEKDTLGFVRNLDPTLCQIK
                     IGKELFTATGRSLAESLINQGFKLFLDLKYHDIPHTVAQACKVAADMGVWMVDMHASG
                     GRRMMEAAAEAVAGYGTKPLLIGVTVLTSMEQSDLAEIGLNIAPEEQVIRLAKLAQSS
                     GLDGVVCSAQEAAPLRRELGQDFVLVTPGIRLDVAGNNDDQRRIMTPAEALAAGSTYL
                     VMGRPVTQAADPLAVLREVNRVANLEAN"
     gene            complement(21097..21744)
                     /gene="adk"
                     /locus_tag="ACFM6C_000432"
     CDS             complement(21097..21744)
                     /gene="adk"
                     /locus_tag="ACFM6C_000432"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004017 - adenylate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HFC6157937.1"
                     /translation="MKALLLGAPGAGKGTQAQFITAAFGIPQISTGDMLRAAIKAGTP
                     LGLEAKKIIDEGGLVRDDIIIGMVKERIAQDDCKNGFLFDGFPRTLAQAEAMVEAGVD
                     LDAVVEIDVPDSVIVDRMSGRRVHLASGRTYHVTYNPPKVEGKDDVTGEDLIQRDDDK
                     EETVKKRLAVYHEQTEVLVDFYSKLEGEHAPKYIKVDGTQPVEAVKAEVLGALGK"
     gene            21959..22798
                     /gene="htpX"
                     /locus_tag="ACFM6C_000433"
     CDS             21959..22798
                     /gene="htpX"
                     /locus_tag="ACFM6C_000433"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HFC6157938.1"
                     /translation="MKRIFLFLATNIAVLVVINIVLAVLGINSRGGAGSLLAYSAVVG
                     FSGSIISLLMSKFIAKQSVGAEVIDTPRTEEEAWLLNTVEAQARQWNLKTPEVAIYHS
                     PEPNAFATGASRNSSLIAVSTGLLDHMTRDEVEAVLAHEMAHVGNGDMVTLTLIQGVV
                     NTFVVFLSRIIANLIARNNDGSQSQGTYFLVSMVFQILFGFLASLIVMWFSRQREYRA
                     DAGAAKLVGAPKMISALQRLKGNPVDLPEEMNAMGIAGDTRDSLLSTHPSLDNRIARL
                     KSL"
BASE COUNT         5370 a         5869 c         5605 g         6113 t
ORIGIN      
        1 gagtctgaaa tttgatgcac cttatatatt gcgtccctaa gaaaggatga ttaacaaaaa
       61 ttaacgccct ttactttctt ttccgattgg gaacattccc gtcgtactaa caggcaaatg
      121 aaggaacaga aatcacattc aaacggcgtt ccgccgcctc tacaccgctt cccagtaatc
      181 gatatacagc tgcaattcga gattgttgcg ccattcgttg gcaacggggc ggtaaaccgt
      241 gcggatatat tcggggatgt cttcgctgca acgccaaaac atggcttcaa attcgcagcc
      301 gtctttttgc agccacgctt ttttgtgttt accctccgcg cccaaaggct gctggcggac
      361 gacgtgaaat tcgtcggtaa agcttggcgg cgcgaagccc tgcccccaaa cgtgtcgggc
      421 aaggttttga gcctgttcca gcgtgatgtc gcaggctttc aggctgccgt cggtgatgaa
      481 ggtttgcgac aaatcgtctt cgcacaccat ctcgcgcacg gcttcttcaa aggccgtctg
      541 aaacgcgggg atattgtgtt cgagtatgct caagcccgcc gccatcgcgt gtccgccgaa
      601 tttcaaaatc aaatcgggat ggcgtttgga caccaagtcc aaagcatcgc gcaggtgtag
      661 attgggaatg gaacgccccg aaccgcgcac ttcgccgttg tcggcaggcg caaacacgat
      721 ggtcggacga taaaaacggt ctttgaggcg gctggcaacg atgccgacca cgccttgatg
      781 gaagtcgtcg cgatacaccg ccaaagccgt ctgacctgaa ggcagggttt caggaaaagc
      841 attcagcgcg tcttgcagca tagattgctc gatttcgcga cgctcgatat tgaggttgtt
      901 taactgagcc gccagttcct gcgcctcggc atcatctcgc gccaacagac aggcaatacc
      961 gaccgacata tcgtccagcc gtccggcggc gttgatgcgc ggccccaacg caaagcccat
     1021 atcaaacggc tgcgccttgc gccaatcgcg ccgcgccact tcaaacaagg cgcggatgcc
     1081 ggggcgcatt ttgccggagc gcatccgttt caaaccttgc gacacgagga tgcggttgtt
     1141 gtggtcgaga gggacgacat cggcaaccgt gccgagtgcg accaaatcca aaagttcgcc
     1201 caaattcggc tctttgatgc cgtctgaaaa ataattgcgg cggcgcaatt cggcacgcaa
     1261 cgccatcaat acataaaaaa tcacgcccac gcccgccaag cttttgcttg gaaaaccgca
     1321 gcctttttgg ttcggattga cgatgatgca gtcgggcacg gtctcggcag gcaagtggtg
     1381 gtcggtaacg atgacatcca aacccagagc ctgcgcgcgc gccacgcctg cgatgctggc
     1441 aatgccgtta tcgaccgtaa tcagcaaatc tacaccttgc tctgccgcga tttcagccag
     1501 ctcgggcgtt aagccgtagc cgtgctcaaa gcggttgggc acaaggaaat ccactttcgc
     1561 gcccatcgcc gccaaaccgt ccaaaccgac ggcacacgcc gtcgcgccgt cggcatcata
     1621 gtcggcgaca atcaggattt tttcctgacg ctcaaccgca tccgccaaac ggccggcggc
     1681 ggcttcgcaa ttcgtcagcg attgataagg caggagggaa gcgagtttgt cgtccaattc
     1741 ggcaggactt tgcacaccgc gcgaagcaca aagccgggcg attaaaggat cggcaccggc
     1801 ggtgagcaaa tgattaaaaa cgtcggtatt gatggatcgg gtttggattt tgactgacat
     1861 aacgtggggt tttactgtgc gtgtgtgctt aaaatgccgt ctgaaagctt ttcagacggc
     1921 attgctgttc atttgcgggc ggcatccacg accgcaccca gagccgccgc aggcaaggcc
     1981 agtaccgcgc ccgccgcatc cagtatcaac aaggggggcg tatgtaagat attttcaaac
     2041 agcttggatt tgtcggtatg ttttttcgta accgtgtaat aaatatcggc aggcacactt
     2101 tgctcaaaat gataatcggc gttcagtttt tgcggtgtgg cgtagtattt gcctttggcg
     2161 gagacgcagc gcgtgtaaat ggtccgattg tcgagttcga ccgctttaaa ctcaagctgt
     2221 ttcagcttgg cgatgtcagc aggcctgtcg gtatcgtagc gcaggcaaag gccttcggta
     2281 ctgaaattct ggctgccagg cgattcgagt ttgaccggca gggcttggtg gcgagcatag
     2341 ctcggggtat cctcaactat ttggaagggt ttgtccagcc ctgccttcaa aatgcccgtc
     2401 agcttcgccg aatcttcggg attgacgacg aaccagtatt tcccgcccat catcaccaga
     2461 ctgccctttt ccaattgggc attgtctttg gcaaccacac cgaaggcgcg gatttgatcc
     2521 ttgtcaacgt gtttataggc ggtcgtttgg ctgaacgggt cgttcatgcc ccacatcatt
     2581 gccgtacagc cattcagcat caaggttgcc gccaaaacgg cggcggtcgt tttacggaac
     2641 aacattttat cctccaatct aaataacggc ggatgtcgtc tgaaaatatg cctaaatttc
     2701 cgcgtccccg ttttccatca cggttttcaa ttcttgaaac agcgcgcgga agtttttcgg
     2761 cggtttgttt tgctcctgct cttttttggt gttgcggacg agcgtcctca gcttgcccgc
     2821 gtccgcatgc ggaaaatccg acataaactg cgtcaacgcg ccgtcgtctg ccaacagccg
     2881 tacgcgcgcc tgttccacac gttgcaaaaa ggcattgtgc accgcatcgt cgccgcgcag
     2941 cttggcaaga aacgcctcga tgggcgcggg atccgtgtcg cgcatcagcc tgccgataaa
     3001 ttgcgcctgc cgcttgagcg cgccgttgga cgtaattttt ttataggtaa cgacggcttc
     3061 gtacaaatct tcgtccaagc cgattttttt cagcgtgtcg tttgagagct tggtcagttc
     3121 catacccaaa tcctgcaaac cgttcatctg ctttttcatt tgggttttgc tgatccattc
     3181 gtcttcttgt tcaaacatct tgattctcga attttttcca atagcgcatt ttaacagaat
     3241 gccgccgcgt tcagacggca ttttgcaccg cacgccctgc aagcggcgcg cttttgcccc
     3301 tgccgcccga aacggttaaa atgccgcaaa gcatcatcaa gaaagatttc tatgctgttc
     3361 aaccacaccg cttccgaact cctcgacctc tgccgccgca cgctcgactt ggcaaaagcg
     3421 acgggcgcaa ccgccgccga agccgatttc agcgaatcat tgggacaaag cgtcagcgta
     3481 cggctgggcg aaatcgaaca aatcgagttc cagcaggaca agtcgctgga cattaccgtt
     3541 tacgtcggca aacgcaaagg ccgcgccagc actgccgact tctccgaaaa agccctgcaa
     3601 gacaccgtca aagccgccat cgacatcgcc cgctacactg ccgaagacga ttgcgcaggt
     3661 ttggcagacg cttcgcttat ggcgcaacac atcggcgacc ccgaccttta ccacgaatgg
     3721 gatttggata cggaagccgc cgtcggcttg gcaaaacaat gcgaacaagc cgccctgaac
     3781 gaggatgagc gcatcgaaaa ctccgaaggc gcggcggtgc aaaccggcca ttaccaatac
     3841 gtttacggca acacccacgg ttttgccaca caccggcaag gcacgcacca cagcatttcc
     3901 tgcagcgtcg ttgccgccga cgaaaacggg atgcagcgcg actactggta cgattccgcc
     3961 tgccgccatc cggatatgga cagccccgaa accatcggtc aaaccgccgc ccgccgcact
     4021 ttgcgccgac tcggcagccg cagcatcccg acaggcagct accccgtcct cttcgatacc
     4081 accgtttcgg gcggtcttat cggacacctc gtcggcgcac tctccggcgg cgcgctctac
     4141 cgccaaagca gtttcctgat cgacagcatc ggcaaaaaag tcctgcccga tttcctcaac
     4201 ctgcgcgaag aaccgcacat cccccgctct ttccgcagca gctattttga tgcggaaggc
     4261 gttgccaccg caccgcgctt cgtgattcaa aacggcattg tcaaaggcta tttcctcagc
     4321 agttacagcg cgcgcaaact cggtatgcag accacgggca acgccggcgg cgcgcacaac
     4381 ctgtatttga accatacgca cgaaacgcaa tccgacctgc tgaaagaaat ggggacggga
     4441 ttattggtta ccgaactgat gggacagggc gcgaacacca ttaccggtga ctactcgcgc
     4501 ggcgcggcgg gtttttgggt ggaaaacggc gtgattgcct accccgtcca cgagattacc
     4561 gtagccggac gcttgcagga tatgtaccgc gacattgtcg gcgtggcgga tgacgctttg
     4621 cggcgttcgt ccaacaaaat cggctcgatt ctgattgcgg ggatgacggt tgccggaagc
     4681 tgaacgccct gccgatgccg tctgaagacg aaggcagcac gttttgcccc gtgcctaccc
     4741 gtttgccgtt ttatgccgca ccgccttttg ccgacaacat tgcacatttt ttcatcagca
     4801 ctgattttcc cttatccgtc aaaatactaa gccacttgtc cacaacaggg tacacacaag
     4861 ttcaggataa ggcgtgcggg gattggggtt tttccgccgt cggcaaaacg gcagacaaaa
     4921 acggcgggac attgcctgtc ccgccgtttt caaatataca tttgaccgta catcaggaat
     4981 taagcagcct gaatgttggc ggcctgtttg cctttagggc cggtggttac gtcgaaagag
     5041 acgcgttggc cttctttcag ggttttgaaa ccttccatat tgattgctga gaagtgagcg
     5101 aacaaatctt cgccgccttc atcaggcgtg atgaaaccaa aacctttagc gtcgttaaac
     5161 cattttacga taccggttgc cattagaaac ttcctatact caaaaattaa caaaatcagc
     5221 aaaacaaggc atacggcaaa ccgagccgtc tggcgttcct tccagcttga tatactcggc
     5281 ggatgcccaa tcctgcttaa ccgtcttttt acatttgtta agacaaaacg tcaagctatg
     5341 ttttcaaaaa agtgggaaaa taggcaaaag taccgaaaat acaacaaaaa tgccgtctga
     5401 acgcggcttt caaatgggac acactatgac cgcgcaacac caatccgaca cgctcttgca
     5461 ccgtctgaac accctgccgc cgaaacgtta cggcgttttc ctattgaacg acgattacac
     5521 cacgatggaa tttgtcgttg aaatcctgac cgaaatcttt atgctcggac aagaacaggc
     5581 ggtagcggta atgctcttgg ttcatcacga aggcaaaggc ctgtgcggca cttacacgcg
     5641 cgatattgcc caaaccaaac agcaacaagt catgcagcgg gcaaaagccg aagggcatcc
     5701 gctgcaatgt attgtcgagg agatttaata tgcttgcacc cgaattggaa cagattttgc
     5761 agcagcttta ccgcgaggcg cgtaaggctc attatgaatt tatcagcctc gagcatctgc
     5821 ttttggtact catcgaagaa gatgccgccg tgccgaacgt cttaaaactc tgcggcgcgg
     5881 atttgaaagt ggtgtccgaa cagctcgccg ccagcgttgc cgaaaacacc cccctgattc
     5941 ccgaacacct tttagacacg gtcgaaaccc ggcccacgct cggcttccaa cgcgtgatgc
     6001 aacgggcgat ggtgcatacc cagtctgccg gaaaagccgc agtcgaaccg ttggacgttt
     6061 tggtcgcgct gatgagcgaa accgacagcc acaccgtcta tttcctcaag ctgcaatcgg
     6121 ttacgcgttt tgaagttttg cgctgtattg cccacggctc tcccgatgaa gatgaagatg
     6181 aagacgatgg caactattct tcagacggca tggacgacga taatgaaaac cgcaccaaac
     6241 cgggcaaaaa ccctttatcg gagtacaccg tcaacctcaa cgccgaagtc aaagccggcc
     6301 gcatcgaccc cttaatcggc agaaaacacg aaatggaacg gctggtgcaa atcctgtgtc
     6361 gccgccgcaa aaataatccg cttttggtcg gcgaggccgg cgtgggcaaa actgcgctgg
     6421 cggaaggttt ggcacatcaa atcgtcaacg gcgacattcc cgacgcgctt aaggaagccg
     6481 aagtgtacgc gctggatatg ggttcgcttt tggcgggcac gaaataccgc ggcgactttg
     6541 aagcgcgggt caaatccgtc ttgaaacagc tcgaaaaaat cccgcacacc attttgttta
     6601 tcgacgaaat ccacaccatc atcggcgcgg gcagcaccag cggcggtacg atggacgcat
     6661 ccaacctgct caaacccgca ttggcgaaag gttcattgcg ctgtatcggc gcaaccactt
     6721 acgacgaata ccgcaccatt ttcgacaaag accacgcctt aagccgccgt ttccaaaaaa
     6781 tcgacgtggt cgagcccacc gtcgccgaaa ccgtacaaat cctgcgcggt ttgaaaccga
     6841 tgtttgaaga tttccaccaa gtgcgctata cgcaaggcgc actcgaagct gccgccgaac
     6901 tctccgcccg ctacatcaac gagcgtttcc tgcccgacaa agccatcgac gtaatggacg
     6961 aagcaggcgc ggcacaacgg attctgccca aatccaaaca gaaaaaagtc attggcaaag
     7021 cgcaaatcga aaccgtcatt gccaaagtcg cgcggattcc agaaaaaacc gtgtcgcacg
     7081 acgacaagca agtgctgcaa ttcctcggcc gcgatttgaa aaacatggtt tacggtcaag
     7141 aaaatgccat cgatgcgctg gttgccgccg tcaaaatgtc gcgctccggc cttgccctac
     7201 ccgacaaacc gataggcagt ttcctcttct ccggcccgac cggcgtcggc aaaaccgaag
     7261 tcgccaaaca gcttgcctac tcgatgggcg taccgctgca acgctttgat atgtccgaat
     7321 acatggaacg ccacgccgta tcgcgcctca tcggcgcgcc accaggctac gtcggctttg
     7381 aacaaggcgg ccttttaacc gaagccgtca acaaacagcc gcattgcgta ttgctcttgg
     7441 acgaaatcga aaaagcccac cccgatattt tcaacgtcct cctgcaagtg atggatgcgg
     7501 gcaggctgac cgacaataac ggcaagagtg ccgacttccg caacgtcatc ctgattatga
     7561 ccaccaacgc aggcgcggaa agcctcagcc gccccagcct cggctttacc gccaaccgcg
     7621 aacgcggcga cgaaatgcag gccatcaaca aactcttcac gcccgaattc cgcaaccgct
     7681 tggacgcaat tatcccgttt gcgcccctgt ccgaacccat tatcgccaaa gtcgtggata
     7741 aattcctgct tcagctcgaa caccagctcc tcgacaaaaa agtcgaagcc gaattcacgc
     7801 cggcattgcg caaatatctg gcggaaaaag gtttcgaccc gcaaatgggc gcgcgcccga
     7861 tgcaccgcct gattcaggaa aaaatccgca aaccgctcgc cgacgaactg ctgttcggca
     7921 aactcgccga cggcggcttt gtgcggatag actgggatgc tgcaaaagaa gaagccgtgt
     7981 tgaaattcaa gaaaaacaaa gtcaaacctg aagcagaacc tgtttaacca gttgaaaaat
     8041 aaaaagccgt ctgaaaggtt cagacggcat tttgtcaaat atcggtccct attccggcaa
     8101 acttctccac aaacgccgca atcttttgaa aaacactttg tttcttcgtc agatattgcg
     8161 ggttgagcgg actcattttc ggcagggttt cggtcagttc cgtaccgttt tcgctggcat
     8221 agccgcgttt gagcgagccg gtcaaatagc gtttggcggc ggtttcgttc agaccttcgg
     8281 cggcaatcaa tcctgccgct tcgtgccgca tcacctcttg cgcgtaggtg tagaaggttt
     8341 ccagtatggc gggaacgtcg gggactttgt ccaaatccgt atcgttgatg aaatccacaa
     8401 tcagaccctc tttggcgcgg tgtccgatac ttgcgcggat gatgcggcgg atttcttcca
     8461 ccagctccgc tttgcctttg atttttttgt ggtgctcgaa aaccagttgc aggatgtaat
     8521 ccaaattgat ttcctgcgat ttgagcaaat ccacctcaaa aaccacatcg tcccagtcga
     8581 tttttgactg ttctttctgt tcgcctgctt tttggcggcg caaccaatcg cggatgtcgt
     8641 tgtaggcgga acggtagtcc tgcaccgccc tttcagacgg catcggcact tgccgcattt
     8701 cctgcacgtc ttcatcgctc aggtagtatt tttcttgaaa cgccttcatc gcatcttcgt
     8761 ccgccgcgtc cacactctgc aactcgcgca gcgcggcaaa ttcatcgtag ttctgcaata
     8821 cgttttccgc ccgcaggtat tcgccgaaga gtttggcaaa atcttttttg tctttttccg
     8881 tttcgatttt gtcgggttcg gggaaacgct cgcgcaattc ttttgccaca tccaaatagc
     8941 cgcgccgtgc ttcgcccgtc cgatcatcga tatagccgtt catgtattct tcgtaacttt
     9001 tttccagcac tacatttttg gtgtttttgt cgccaaacaa ggtaatcgca tcaatggttg
     9061 cctgctccaa atcgcggaag cagacaatat tgccgaaggt tttggtggca tcgtaaatgc
     9121 ggttggtgcg cgaaaacgcc tgcatcaggc cgtgatagcg caggttttta tcgacgaaca
     9181 acgtgttcag cgtcggcgcg tcaaaacccg tcaaaaacat gccgaccaca atcagcaaat
     9241 ctatttcctg atttttcacc cgttttgcca aatctcggta gtagttttga aaggctttgc
     9301 tgtccgtgcc gaaattggtt ttgaaacagg cgttgtaatc gttgatggca gcctgcaaaa
     9361 attcttttgc gctgctgtcc atcgcttccg gttcaaaagt ctcatcgaca atttcaccga
     9421 cggcgttttg ctcttcgttg gccgcaaagg aaaaaatggt ggccactttc agcgggtgca
     9481 agctgcctgc ctgttgtgtt ttgaacgctt cgtaatagca cttcgccgca tccacgctgc
     9541 tgacggcaaa catcgcgtta aagcctttgc cacccgcatt cagccggtgc gttttctgcc
     9601 tgaactggtt caggatatat tgcgtgattt cgcggatgcg ttcggggtgc agcagggctt
     9661 ggcggttttc ggcggcactc agtttcttct cgtcctgttc cgcttccacg gctttgaact
     9721 gcgggcgcac atcgttgtaa tccactttga atttcaatac tttttcatcg cggatggcat
     9781 cggtaatcac ataagaatgc aactcccgcc cgaacacgcc cgccgtggtt tccgcaccca
     9841 aagcgttttc gggaaaaatc ggcgtgccgg taaagccgaa ctggcagaat tttttaaatt
     9901 tctttttcag gtttttttgc gcttcgccga attgcgagcg gtggcattcg tcgaaaataa
     9961 agacaacccg ctgatggtaa atcggcagat tatcttcact cttcatcagg ttattcagct
    10021 tttggatggt ggtaacgatg attttgttgt cgtctttttc caaattgcgt ttcaagcccg
    10081 ccgtgctttc cgaaccgttc acgctgtcgg tcgaaaaacg ttggtattcc ttcattgtct
    10141 gatagtccaa atccttcctg tccaccacga agaaaacctt gtcgataaac gccgattccg
    10201 tcgccagatg cgccgcctta aagctggtca gcgttttgcc gctgcccgtg gtgtgccaga
    10261 catagccgcc actctccggc ttgctccaat tcttcgcctg cgccgagctg ttgattttcc
    10321 acaaaatgcg ttcggcggcg gcaatctgat acggccgcat aatcagcagc gtattattcg
    10381 catcgaacac gctgtaatgc agcaaaacgc tcagcaatac gcttttctgc aggaacgtgt
    10441 cggtaaagtc tttcaaatcc ttaatcggat gattgtccga ccgcgcccaa ttcatcgtga
    10501 aatcgaagct gtttttgtcg cgcttggtgg tgttggcgaa atagcgcgtg tccgtgccgt
    10561 tggaaatgac gaagatttgc aggaatttga acaacgaatt gtcgctgttg aagctctctt
    10621 tgctgtaacg gtgcacctga ttgaatgctt cacgcaccgc cacaccgcgc tttttcaatt
    10681 caatctgcac cagcggcagg ccgtttacca acacggtaat gtcataacgg tttgcatgcg
    10741 tgcccgtctg ctcaaactag ttgataagct gcacatggtt gcgggcaagg tttttcttgt
    10801 ccagcagata aatgtttttc agacggccgt catcaaaagc gaaatcgtaa atatggtcgt
    10861 cgtggatttt gcgggttttg tcggtaatgt tttcagacgg cctgtccaga tattccgtta
    10921 aaaaccgcgc ccattcgccg tctgaaaacg ccacatcgtt cagccgctgc aactgcgcgc
    10981 gcaggttttc cagcagcctg ctttggctgt tcaagtcttt gcggtattcg taaccctgat
    11041 tctgcaaatc ggcgattaac tccgcttcca actggttttc cgattggtag ctgcccgact
    11101 gttcgatttt ttcatattgg tcgagcacga tgaaattcgg cgtttcagcg atgggtttag
    11161 tttcgaggtt catatgggtc gtcctttgcg gtgtcgggtt ttatagtgaa ttaaatttaa
    11221 accggtactg cgttggctcg ccttgccgta ctatttgtac tgtctgcggc tcgccgcctt
    11281 gtcctgattt aaatttaatt cactataaac ggtttgatgt tcggattggg ctgcctgaaa
    11341 atgtgcaggc tgctttttca ggtagcctta gggaaggcaa gcagctgttc gcggtaatat
    11401 tcgtattgtt tgcggcgcag ggcgatttcg tgcggcaggc cttcgctgat agagtgggtc
    11461 agggtatcga atttgtctag gatggcggca attttttcct gttcggggag tggtgggatg
    11521 gggattttta atttctttaa ttctttcatg ctaataatag gtaaacttga agtattaata
    11581 agttttttgc tctgctccgc aataatgaaa aaataataga aagcgaaatt tatatctaaa
    11641 gcatccttaa attcatcttt aattgtaaaa ttggtcagtt gttggttact aatataatta
    11701 acttttatta acgcatgctc tcctatggtt gccgttgtcg acatcattat tgatttagca
    11761 ggaaacagct tgccgccctt aactgcgctt tttgatatat gcttcaatga attatctaaa
    11821 atacggccat tttccctaat atcttccatt ctaaaccaag ggattgagcc attttcccaa
    11881 tattctttat ttgatttgga aggggtatag ccattcttca agtcaaacac ctcccccaac
    11941 gtcttccaaa ccacatcttt cagacggcct ttatagccat cagctatccc cccccgattt
    12001 gattgtcaaa atctaaaaga aagtcgcggt aataccggta ttggcgtttg cgcagggcta
    12061 attcagcttc cagctcggtg aatttgtcaa gtatttttac aattttttgt tgggtttcca
    12121 ggggtgggat agggattaat aattttttca agttactggc atttagagca ggaatacctg
    12181 taaatgtaca taaggcatga atctcttgtt caaattcaag taatatatga tagagaaaac
    12241 gaacatccaa ttctgttcta ttcttaatag taactgcata atttaagttg ccacgaaaat
    12301 atcttccttc ttgccacgtt attgagccga ctcccgctcc tcttgttgtg atgccgatag
    12361 ggtcattttc agtgttccat tcatcaatat agccaagcgg ctctttgcca ctgttaataa
    12421 ctggataact accaatatta tttgagattt tctgcttact tacagcttgt cctgttttta
    12481 tgatagctat cccattttct ccacccaacg gcttccactc caccggtgcc gtctgaatca
    12541 tctcaatcaa ttttttcgct ttgctttgca tatccatggt tgttttccgt ttctttcccg
    12601 ctgtggcggg atgtggggcg gttgtggggt gcttcggctc actctgtccg tttgccgtta
    12661 tttctgcggg ctgaagtccg tcctgctttc aggctgcctg caatggtgtg caggctgctt
    12721 tttcaggtag cctgaatggt agttattttg tgcggtcttt tttctgtttg atctgttgca
    12781 cggctgtttt ttccaacgct ttaacgcttt ccagataggc ttgctccacc ggcgacagga
    12841 tgcgcgcttc ataggcgcgg tattcgcgtt cggctttctg ctctgcctgt ttgcggctga
    12901 tgctgcctgc accctgtaat gtgccttgtc cgtacagccc ggaaaatttg tccaattcgg
    12961 ctatccagtc gcgcatatac atggggcttt gctcctgcgc tttgatttcc gccaggtcga
    13021 agaaggcgga aaccagacgg ttcaggcgga acagttcgtc ttcggtcaga tagtttttgg
    13081 cgattttggc ttcattcagc gtggggattg cgccttgaaa ggtggtcagc cccataaagt
    13141 ctttgctgct gtcggcacgg ctgtatatca gctcagctac ggtttgccgg ctggcggcat
    13201 agtgcagttt gttttgaacg gcggcaaaaa aggtttggct ttcgctgctt ttggggttgt
    13261 agtcttggct ggttgcatat aaatcaagca cttgccggta tagggctttt tcgctgctgc
    13321 ggatgtcgcg aatgcggttg agcagttctt tccaatagtc gccgccgcct gtgcctttca
    13381 ggcgttcgtc gtctatggca aagcctttgg tcagatattc gtccagccgt tcggttgccc
    13441 attggcggaa ttggatgccc cgcgcggaac ggacgcggta gccgacggca ataatcatgg
    13501 gcagggaata atgggcgatt ttgcggttta ccttgcgccc gttttcattt tgaactgtca
    13561 actggaagtt gacagttgcc ttctcttcca attcttgctc tgcaagaatg gttttaatgt
    13621 gtttgctgat attttgtttg gtggtttggt acagttctgc catgtccgcc tgcgtcagcc
    13681 aaagctgtcc gccaaattcc tgcaaggcaa attgggcagt gccgtcgttg gcggtgtata
    13741 ggatgatgct catgcttcaa tctctgcaat cacttcgtca atttcacgcc gcagccgttc
    13801 gattttggca acggtttcgc tgatttcggc gttaagctgt ttgatgtcga taatttcgcg
    13861 ggtgtcttcg ggttcaacat agctgctgac ggcgaggttg tagccgttgt ctttgacggt
    13921 ttgctgggcg gcgttttggg cgatatgcgg cacatcggct ttatcggcga agagtttgac
    13981 gatttcggca atgtgttctt cggttaagac gttgttgttg gtttcttttt taaagaagcc
    14041 gcctgcgtcg atgaattgga tgtcggtatt gtctttgtgt ttggacaaaa ccagtatatt
    14101 gacgacgatg ccggtgccgt aaaagagatt gggcgcaagg gcgatgacgg tttccacgta
    14161 gttgccctcc accagatatt ggcggatttt ctgctctgcg ccgccgcgat agaaaatgcc
    14221 ggggaatgag acgatggcgg cgcggcctct gccagaaagg tagttcagtg cgtgcagaat
    14281 gaaggcaaaa tcggctttgg atttcggggc gagtacgcct gcaggggcaa agcggtcgtc
    14341 gttgattaag gtggggtcgc cgctgcctat ccagttgatg gaatagggcg gattggaaac
    14401 gacggcatca aagggtttgc tgtctttgag tttgggattg gtcagtgtgt cgcccaattc
    14461 gatgtggaat ttgttgtaat tgacgttgtg cagaaacata ttcatgcggg cgaggttgta
    14521 ggtggtgtgg ttgatttcct gcccgaagaa gccttcttcg atgatgtgct cgtcaaactg
    14581 ttttttcgcc tgcaagagca ggctgcccga gccgcaagct gggtcgtaga ttttgtttac
    14641 tttctcctgc ccgtgcaccg ccagccgcgc aatcagcttg gatacgcttt gcggggtgaa
    14701 aaattcgccg ccggatttgc ctgcgttggc agcgtagttg gaaatcaggt attcgtaggc
    14761 atcgccgaaa aggtcgatgt ggtggtcttc aaaactgccg aaatcgagtt ccgccacgcc
    14821 ttttaggacg gcggcaaggc gtttgttctt gtcggcaacg gtgctgccga gccggctgct
    14881 ggtggtgtcg aagtcgtcaa acaggccttt aatgtcttgt tcggacggat agccggaggc
    14941 ggagctttca atcgcggtaa aaatttcttt cagcttggtg ttgagctctt cgttttgatg
    15001 ggcttcggcg gcaatattgc aaaaaagctg gccggggtag atgaaatagc ctttgacttt
    15061 gacggcatcg tctttgattt cgggcgtgat gatgctgtct ggcatagcgg cgtaatcaat
    15121 actgctgtcg cctgcctgca tatagtcggt aaagttttcg ctgataaagc ggtagaaaag
    15181 tgtgccgaga acgtattgtt taaagtccca gccgtccacc gcgccgcgta cttcgtcggc
    15241 aattttccaa atttggcggt gcagttgggc gcgttgttgc atttcggtca tcatcgaaat
    15301 ccatataaaa gttaaacaaa tcgaaatcgc ctgatatttt cagacgattt tttacgggca
    15361 ttcaaattaa gccaaatttt ccagcatcca tttgacgtag cgctcgacgc ctgatttgac
    15421 atcgaaaaat tcttccgtat aacctgcctc acgcaatttg gtgatgtcgg cttgagtgaa
    15481 gctttggtat ttgcctttga gcgcatcggg aaatgggatg tagcggataa gttcttcttc
    15541 taccagctct ttcaagctca tttcgggttt gccttcggcg gcgcggcagg cgttgacggt
    15601 ggcggcggcg agttcgttaa actgttggct gcggccggtg ccgaggttgt agatgccgga
    15661 aagttcggga tggtcgaaga agtagaggtt gactttggca acgtcttcga cgctgacaaa
    15721 gtcgcgggtt tgttcgccgt tgccgtagcc gtcgttgctg ccgaacaggt tgacgtaacc
    15781 gtgttcgcgg tattggtgga aatggtggaa ggcgacggat gccatacggc ctttgtgttg
    15841 ttcgtgttgt ccgtacacgt tgaagtagcg gaagccgacg acttgggcgg tcaagccttc
    15901 tttcatgcgg cggcgcaata cttggtcaaa caggaatttg gaatagccgt acacattgag
    15961 cggtttttcg agttcgcgct cttcacggaa gatttcgcct ttaccataca cggcggcgct
    16021 ggaggcgtag aggaagggaa tgcgttcgtc ctgacaccag tccaacaaat ccagcgtgta
    16081 ctggtagttg ttttccatca tatacaaacc gtcgtgattc atggtgtcgg aacacgcgcc
    16141 ttgatggaaa acggcttcga tgttttgata aggtaaaatg tgttccctca cttggcggat
    16201 gaattcatgt ttgtcgagat aatgggcgat ttcgcactcg gcaaggtttt tgaatttttc
    16261 gcctttgctc aaattatcga cggcaacaat gtcagtaata ccgcgttgat taagtgcttt
    16321 gacgatgttg ctgccgataa agccggccgc gcctgttacg atgatggtca tattcggttt
    16381 cctttgtttt gagtaaaatt aataaactta gttacaagaa atcatcgata ttgtcctgaa
    16441 acacaaattt gcgatgatat tccaaatatt tttctcttcc ttcgggatat attctcatct
    16501 taattttttg catttggatt gatattaagt ttttcccatg tgtaacggct tagtcgagta
    16561 ccgcaaatca aacgaccatc atccaagaaa gtaatataac cttgatcgaa caaccaatca
    16621 taagtcggcg ttaaagctaa cccatttaaa taatctaatg cctctttctc atttttctca
    16681 gtaatacaaa ccatataagg tttaatatga ctagccctta acaaaatctc atctgtaatt
    16741 aatgtaaatg gacattgcgg catatgattt ataacatcct tgcgatattt ctgctgccct
    16801 tttctacttt tctgtttaat gatttcttgc tctacgaatt gattaaattc tgaagccggt
    16861 atttctaatt tttctcttga taagagttgc gggtgcacga tagagcgaaa ttgataatcc
    16921 aaaaatattc ggaaataaaa taatggttct gaatcttcta tatctttgac aggcaatagt
    16981 ttaagaattg ataaataaat aattttgggc aatacaatct tacgccaaat tgaccatata
    17041 tcatcctccg aacggatata acccctacgg taacctttag aattttccaa atggtctgat
    17101 acatcatgga ttgaaaagaa aatattttct gtaggcagat tattaatact taaaacgtaa
    17161 tcatcataaa accttgaaat atcatgatga tatttctgtt cttgtttgtg atattcaact
    17221 tttgcatcaa ccaaataacg ctgtaaattt ttcttattaa aaaaacaatt tttctgaatg
    17281 aaaggatatt ctaccctcct tccatttttt gtctcagtaa tcccccaatt ttcatactca
    17341 aaaaatgtac ttagttttcg accactatca tcaatataac tacctacata tttgcgtgct
    17401 tccccattac caccaaaaac agataacttg ttattcctgt gaataaaact atcttccgca
    17461 cgtaaatttt gaatactatc gacaataaaa tactctatgt tttcaatagt aattctttga
    17521 aaatccggca ttttactctc cataaagcgt aatatccatt tgttttaata tagcgattaa
    17581 tacatcaaca acaatactgt ttcccgcttg gcgatacatt tgagtatcac taactaaaat
    17641 tttaaaatca tctctaaaac ccattagccg caaacattcc ctaggtgtta atttacgaat
    17701 acgtccacga tcatgagtaa cataattatc aaccccggca cgatgcattt tatgcatagt
    17761 ttgcaataat gggcgagcta caggcaaatc agtttccgta ctggttttaa aattttttgt
    17821 tcctcctgcc aaaacataat ttttgatttt ttcagaaaga taatattttt cctcaacgtt
    17881 atttacatca aaaataaagt catcaaattc agattcgcgg gctgcctgaa aaataaaatc
    17941 accatgccaa ttaaattgtt gatttgcttt ttggcataag gcaatttctc cattaatctg
    18001 tgtataacgt ttttgtctat ttttagaact ggtaacaaat ttcgcaccct tttcacgtaa
    18061 aaaatatttg ctatcagtat agtcctccaa aaaatcttgc atagtatgtt ctaattcaat
    18121 cttttcagga aactgaaaac catttatagg aggggtatga aagccaacaa caaaaatacg
    18181 ctcacgatgt tgaggaatcc cataatcctt actattcatt atttggaaat ataagtcata
    18241 accaagtgaa taaaaaacac tttttacaac tttccaagtt tttccattat catgattgag
    18301 caagcccttt acattttcat aaataaatat ctttggttgg acttcatcca caacgcgagc
    18361 aaattcatag aataatgttc ctcgtgtatc ttctaatcct gcacgtttgc caaccatgga
    18421 aaatgcttgg caaggactgc ctccaactaa aatatcaact tgatttctaa actttctcgc
    18481 atcaaattga gtaatgtcgt tatgccaaaa atcttcattt aatttatagt ttccaagata
    18541 acttttttaa cgtatggatc aatatctcct gcaaaaacaa tggtatggtt taaatttaat
    18601 cggtgaaatg cctgttcaac cgcaccaatc ccgctgaata cggttgctaa tctaatatgt
    18661 gaatcaggtt taagaaaagt tttagattgc caaccttgtt gactgggaaa gagcaaagtt
    18721 ttttgtaatc gagtatcgtg tgtctgtgcc attgtcgaaa tagtcatact tatatcgttc
    18781 tgtttatctt atcaatatga aaactacatt gttgattgcc ctgacaatgc cttggtcaat
    18841 tcggcaaacg agcaaaccgc cgtaccgagt ttcgccacga caaccccggc cgcagtattg
    18901 gcaaggtaca tggcttcggg catggtgtag cctgccgcca gccccaaacc cactccggca
    18961 ataacggtgt cgcccgcacc ggatacgtcg taaacttctt gggcgcgggt gggctggtaa
    19021 atcggttcgc cttcactgaa caaggtcatg ccttcttcgc ttcgggtcag caaaatcgcg
    19081 gtcaaatcga ggtggcggcg caggttttgc gctttttcgg tcagctcgcc ttcgtttttc
    19141 caactgccga ccacttcttt caattcggcg cggttgggcg taatcagagt tgcgccgaca
    19201 tatttttcgt aatcgtcgcc tttggggtcg attaatacgg ttttgccttc gtgtttcgcc
    19261 caatcgatca tatcggagat gtgcgacagg ccgcctttgc cgtagtctga aaaaatgatt
    19321 gcgtcgtatt cgggcaagat ttcgcggtat ttccgcttga tttgttccaa cacttcgcgg
    19381 ttgggatgtt cttcaaaatc aaggcggata agctgctggt tgcgggcgac gacgcgcagt
    19441 ttgacggtgg tggcgatttg tttgtcgcgc atcagatagg aggcaacgcc gtcctgcacc
    19501 atcagcgcgt cgagcgcgtc ggcggcttcg tcgtcgccgg ttaccgacaa cagccctgcc
    19561 ctgccgccca acgaagcgat gttgcgcgca acgttcgccg caccgcccgc gcgttggtcg
    19621 atacgtccga tttttgccac cggcacgggg gcttcgggtg aaatacggga cacgtcgcca
    19681 aaccaatagc ggtcgagcat cacgtcgcca acaaccagaa ctttggcttg tgcgaaacgg
    19741 gatttgaggg tttcttgttg aaacttggcg ggcatattgc ctccgttgtg ttttgttcag
    19801 acgaccttaa ccggtaagac cgcctgaaaa tcagtttgct tcaaggtttg ccacgcggtt
    19861 cacttcgcgc aatacggcta gcggatcggc agcttgggta acgggacggc ccatcacgag
    19921 ataagtcgaa cctgccgcca aggcttcggc gggcgtcatg atgcggcgtt ggtcgtcgtt
    19981 gttgccggca acgtccaagc ggataccggg cgtgaccaag acaaaatctt gtcccaattc
    20041 gcggcgcagc ggtgcggctt cttgggcgga gcagaccacg ccgtccaagc ccgaactttg
    20101 cgccagtttc gccaaacgga tgacttgttc ttcgggagcg atgttcaaac cgatttccgc
    20161 caaatcgctt tgttccatgc tggtcaacac ggttacgccg attaagagcg gctttgtgcc
    20221 gtatccggca acggcttctg ctgcggcttc catcatacgg cggccgcccg acgcgtgcat
    20281 atcgaccatc caaacgccca tgtcggcagc gactttgcag gcttgcgcga cggtgtgggg
    20341 aatatcgtgg tatttcaaat cgaggaaaag tttgaaacct tgattgatta agctttctgc
    20401 caaactgcgt cccgtcgcgg taaacagctc tttgccgatt ttgatttgac acaatgtcgg
    20461 gtcaaggttg cggacgaatc cgagcgtgtc tttttcgttg gcaaaatcaa gggcgacgat
    20521 gacgggggtg cgttgttgcg gagtttggaa gtcggagatt aaaggattca tggtgttttc
    20581 gtttcgggtt ttcagacgac ctttatcgtc tttttcgcag tatagtggat taactttaaa
    20641 ccggtacggc gttgtctcgc cttagttcaa agagaacgct tctctaaggt gctgaagcac
    20701 aaagtgaatc ggttccgtac tatctgtact gcctgcggct tcgtcgcctt gtcctgattt
    20761 ttgttaatcc actataacaa cgtaaattca aaccgtaggt cgggcattga tgtccgacct
    20821 acgcggactc aagcctccga caaactgttt cggataaatt tgaaccggta catcagccgt
    20881 cattcccgcg caggcgggaa tccattgata aaactcagtt catcagattt aaacagcgat
    20941 tgcccaaatt cagaaatgga ttcccgcctg cgcgggaatg acgccaaatg attatttttc
    21001 ggttgcaaca cgctgtttat caaaaacagg tcgtctgaaa acctgatttt ctgttttcag
    21061 agtgcgaagc ctgcccgtgg gtacgacctt ttcgatttat ttgcccaatg cgcccaatac
    21121 ttcggctttc acggcttcta ccggctgagt gccgtcaact ttgatgtatt taggcgcgtg
    21181 ttcgccttcc agtttgctgt aaaaatcgac caaaacttcg gtttgctcgt ggtaaacggc
    21241 aaggcgtttt ttcacggttt cttctttgtc gtcgtcgcgc tgaatcaaat cttcgccggt
    21301 tacgtcgtct ttgccttcaa ctttgggcgg gttgtaggta acgtggtaag tacggccgga
    21361 agccaaatgc acgcggcggc cgctcatgcg gtcgacaatc acgctgtcag gcacatcgat
    21421 ttcaacgact gcatccaaat ccacgcctgc ttcaaccatc gcttcggctt gtgccaatgt
    21481 gcgcgggaaa ccgtcaaaca ggaaaccgtt tttgcagtcg tcttgcgcga tgcgttcttt
    21541 gaccatgccg ataatgatgt cgtcgcgcac caagccgcct tcgtcaatga tttttttcgc
    21601 ttccaaaccc aagggcgtgc ctgccttaat cgcggcacgg agcatgtcgc cggtagagat
    21661 ttgcggaatg ccgaacgctg cggtgatgaa ttgcgcctga gtgcctttgc ccgcgcccgg
    21721 tgcgcctaaa agtaatgctt tcatgaagtg atccttttaa atgtgtttat tggaatcaaa
    21781 cagatggttt acgattctac acggcttggc acaatagttc aaaaaccaac tgcacaaact
    21841 gccatttgca agcaaatgtt ttgcatacct ttgccgagcc tgatattcac aaggcggcaa
    21901 ctttttggga caatccccaa aatttcaaaa catcacaccc taccaaaaag gaacatccgt
    21961 gaaacgcatt tttctgtttt tggctaccaa tatcgctgtt ttggtcgtaa tcaacattgt
    22021 tttggcggtt ctgggcatca acagccgggg cggcgcgggc agcctgttgg cgtattccgc
    22081 cgtcgtcggc ttcagcggct cgattatttc gctgctgatg tccaaattca tcgccaaaca
    22141 atcggtcggt gcggaagtca tcgacacgcc gcgcaccgaa gaagaagcct ggcttttgaa
    22201 cactgtcgaa gcccaagcgc ggcaatggaa cctgaaaaca cccgaggtcg ccatctacca
    22261 ctcccccgaa cccaatgcct ttgccacggg cgcatcgaga aacagctccc tgatcgccgt
    22321 cagcaccggt ttgctcgacc atatgacgcg cgacgaagtg gaagccgtat tggcgcacga
    22381 aatggcacac gtcggcaacg gcgatatggt tacgctgacg ctgattcaag gcgtggtcaa
    22441 tacctttgtc gtgttcctgt cgcgcattat tgccaacctg attgcccgaa acaacgacgg
    22501 cagccagtcc cagggaactt atttcctggt cagcatggta ttccaaatcc tgttcggctt
    22561 ccttgccagc ttaattgtca tgtggttcag ccgacaacgc gaataccgcg ccgatgcggg
    22621 cgcggcaaaa ctggtcggcg cgccgaaaat gatttccgcc ctgcaaaggc tcaaaggcaa
    22681 cccggtcgat ttgcccgaag aaatgaacgc aatgggcatc gccggagata cgcgcgactc
    22741 cctgctcagc acccaccctt cgctggacaa ccgaatcgcc cgcctcaaat cgctttaaac
    22801 cgatttgaaa cggcaaaaac cgtacgcgca agcagtacgg ttttttgtat atgctgtctg
    22861 aaaacatcag gtttccatac cgacaccaac cgtatccatt tccgcaccgg atacgccgca
    22921 ttgatatacc ctgataaacc gtatccggac agaaaat
//
LOCUS       DAXHPV010000016        22369 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.016, whole genome shotgun sequence.
ACCESSION   DAXHPV010000016 DAXHPV010000000
VERSION     DAXHPV010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 22369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22369
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.016"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            1..99
                     /locus_tag="ACFM6C_000434"
                     /pseudo
     CDS             1..99
                     /locus_tag="ACFM6C_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805306.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            complement(120..1034)
                     /locus_tag="ACFM6C_000435"
     CDS             complement(120..1034)
                     /locus_tag="ACFM6C_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HFC6157939.1"
                     /translation="MDAVQLKSFVAVAHEGNLTQAAKRLFLSQPAVSAQIKALEEYVG
                     TPLFRRTGKGMVLTRAGEILLPEAESLLQYKHKLEYFAKTLAGDYSEETSLGIIHPID
                     SAKLVALTDNIGQTAPKTRLHIQYGMSGEILSRIQHKTLHGGFILGNAAQRGIRSVFL
                     QNLTYALICPQSQYPHLTRSLPQSLQECVWIEMSGVSGSRKHLHQFWRSNRLSPKKQI
                     LCDYPQTIIDLVAGGIGVAMVPGNKAEAAAKEGAGVAIIESCRHSMPLNFIYAEEYED
                     NPHVSLLLECIEKVWGVQAVQPPVVSDN"
     gene            1290..2759
                     /locus_tag="ACFM6C_000436"
     CDS             1290..2759
                     /locus_tag="ACFM6C_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3360 family protein"
                     /protein_id="HFC6157940.1"
                     /translation="MEKHNGTYRDLHRPASEFATRDEYLEHELQIMQPKRWRPNLPFR
                     DYRFEWEDLIPAMAGTIGKVVMVGAVAAAFATPLGLPDSFVLENVRYELLIAAAFILL
                     VSGFFLPGANLPGTHGPLIPMIPIVVSAGGHPLAFGISIAVLGLLMALFRGGSIMAKL
                     TSNGVCGGLLLYLGFIGTTGQVKKLFSWAGGFNMPYIAFTVIIVTIVMYALLEHWKKR
                     WLAVPLGCLIAGVVAFALGAPFEFHTAPGLPPMSPAYWWGENSGWHLGLPTAESFLVV
                     FPFAVLAVAMWSPDFLGHQVFQKISYPEKTDKVLMNIDDTMTSCSVRQAVGSILGGAN
                     FTSSWGTYIVPASIAKRPIPGGAVLTAVLCIIAGLWGYPMDLAIWQPVLSVALVVGVY
                     LPLLEAGMEMTRKGKTTQSAAIVVFSSALVNPVFGWALTMLLDNLGLIGCKERSAQLG
                     FAGRVLIPAVGFLILCVAMGAVGMLPGIPPFLEHFKSLG"
     gene            3011..3382
                     /locus_tag="ACFM6C_000437"
     CDS             3011..3382
                     /locus_tag="ACFM6C_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157941.1"
                     /translation="MNKTLSILPVAILLGGCAAGGGNTFGSLDGGTGMGGSIVKMAVG
                     SQCRAELDKRSEWRLTALAMSAEKQAEWENKICACVAQEAPERMTGNDVMQMLDSSTR
                     NQALAALTAKTVSACFKHLYR"
     gene            3455..4864
                     /gene="thrC"
                     /locus_tag="ACFM6C_000438"
     CDS             3455..4864
                     /gene="thrC"
                     /locus_tag="ACFM6C_000438"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HFC6157942.1"
                     /translation="MKYISTRGETAHKPFSEVLLMGLAPDGGLMLPEHYPQIGRETLD
                     KWRGLAYPELAFEIMRLFVTDIPEDDLRDILNRTYTEAAFGTKEITPVRTLSDGIKIQ
                     ALSNGPTLAFKDMAMQFLGNAFEYVLNKEGKKLNILGATSGDTGSAAEYALRGKKGVN
                     VFMLSPDGKMSAFQRAQMYSLQDGNIHNIAVKGMFDDCQDIVKAVQNDAAFKEKYHIG
                     TVNSINWGRIVAQVVYYFAGYFNATSSNDETVSFCVPSGNFGNVCAGHIAKQMGLPVR
                     RLIVATNENDVLDEFFKTGAYRPRNSAHTYVTSSPSMDISKASNFERFVFDLMDRDPQ
                     EINTLWAEVAAGKGFDLRFALEKVGGKYGFTSGKSTHPDRLATIRQVYEQDQELIDPH
                     TADGVKVAREVREEGETVVCLETALAAKFDATIREAVGDAAIPRPAALEGLENLPQRV
                     QTVPNSADAVKGIIEQTLA"
     gene            4910..5704
                     /locus_tag="ACFM6C_000439"
     CDS             4910..5704
                     /locus_tag="ACFM6C_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157943.1"
                     /translation="MTLPMQETRFSILLDELAAKQEAAIAPHLLADGTKVWVRKAGRH
                     NARWRYALLGMVARYLKLGVLKPVPSLGGEPAITTESKRLYELRSAGIAVPELLAVRK
                     NALMFGNLAGIPLDTQIRQEAEAGKADAWLAGLEAIARVHKKQQFLSQAFARNMMSDG
                     KNISFLDFEDDPSEVLTIAQCQARDWLCYIHSTALILKNGGLLEAAAEKWGGVLSEQP
                     AEIQRLIAATVKPILPIRRLEHPRWGRDALRLAASISLISLADIPP"
     gene            5892..6668
                     /locus_tag="ACFM6C_000440"
     CDS             5892..6668
                     /locus_tag="ACFM6C_000440"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004324 - ferredoxin-NADP+ reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP reductase"
                     /protein_id="HFC6157944.1"
                     /translation="MAAFNTQKVLSVHHWTDAYFTFTCTRDESLRFENGQFVMVGLMV
                     DGKPLMRAYSVASANWEEHLEFFSIKVQDGPLTSRLQHLKVGDDVLISKKPTGTLVAG
                     DLNPGKHLYLLSTGTGIAPFLSITKDPEIYEQFEKIILVHGVRYKKDLAYYDRFTKEL
                     PEHEYLGDLVKEKLIYYPIVSREEFEHHGRLTDLMVSGKLFEDIGLPKINPQDDRAML
                     CGSPAMLKDTCKVLDDFGLTVSPKTGVRGDYLIERAFVDQ"
     gene            6744..6850
                     /locus_tag="ACFM6C_000441"
                     /pseudo
     CDS             6744..6850
                     /locus_tag="ACFM6C_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(7429..9900)
                     /locus_tag="ACFM6C_000442"
     CDS             complement(7429..9900)
                     /locus_tag="ACFM6C_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HFC6157945.1"
                     /translation="MKKTCFHCGLDVPEHLHLTVRYENEDRETCCAGCQAVAQSIIDA
                     GLGSYYKQRTADAQKTELPPQEILDQIRLYDLPEVQSDFVETHGGTREAVLMLGGITC
                     AACVWLIEQQLLRTDGIVRIDLNYSTHRCRVVWDDGKIRLSDILLKIRQIGYTAAPYD
                     AQKIEAANQKERKQYIVRLAVAGLGMMQTMMFALPTYLYGGDIEPDFLQILHWGGFLM
                     VLPVVFYCAVPFYQGALRDLKNRRAGMDTPIAVAIIMTFIAGVYSLATNAGQGMYFES
                     IAMLLFFLLGGRFMEHIARRKAGDAAERLVKLIPAFCHHMPDYPDTQETCEAAVVKLK
                     AGDIVLVKPGETIPIDGTVLEGASTVDESMLTGESLPVAKMPSEKVTAGTLNTQSPLI
                     IRTDRTGGGTRLSHIVRLLDRALAQKPRTAELAEQYASSFIFGELLLAVPVFIGWTLY
                     ADAHTALWITVALLVITCPCALSLATPTALAASTGTLAREGILIGGKQAIETLAQTTD
                     IIFDKTGTLTQGNPAVRRISLLRGTDEAFVLAVAQALEQQSEHPLARAILKHRVSDGS
                     VPDIAIKQRLNRIGEGVGAQLTVNGETQVWALGRASYVAEISGKEPQTEGGGSAVYLG
                     SQSGFQAVFYLTDPLKDSAAEAVRQLAGKNLTLHILSGDRETAVAETARALGVAHYRA
                     QAMPEDKLEYVKALQKEGKKVLMIGDGINDAPVLAQADVSAAAAGGTDIARDGADIVL
                     LNEDLRTVAHLLDQARRTRHIIRQNLIWAGAYNIIAVPLAVLGYVQPWIAALGMSFSS
                     LAVLGNALRLHKRGKMQSEKMPSEQ"
     gene            complement(9897..11075)
                     /gene="hflX"
                     /locus_tag="ACFM6C_000443"
     CDS             complement(9897..11075)
                     /gene="hflX"
                     /locus_tag="ACFM6C_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009347253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HFC6157946.1"
                     /translation="MTGRTGRNGSTQAQPERVMLVGVMLDKDGTGSSTARLNGFQTAL
                     AEAVELVKAAGGNPVLVETAKRDRPHTALFVGTGKAAELSEAVAADGIDLVVFNHELT
                     PTQERNLEKELKCRVLDRVGLILAIFARRARTQEGRLQVELAQLSHLAGRLIRGYGHL
                     QSQRGGIGMKGPGETKLETDRRLIAHRINALKKQLANLKKQRALRRKSRESGTIKTFA
                     LVGYTNVGKSSLFNRLTKSGIYAKDQLFATLDTTARRLYISPECSIILTDTVGFVSDL
                     PHKLISAFSATLEETAQADVLLHVVDAAAPNSGQQIEDVENVLQEIHAGDIPCIKVYN
                     KTDLLPSEEQNTGIWRDAAGKIAAVRISVAENTGIDALREAIAESCAAAPNTDETEMP
                     "
     gene            complement(11080..12360)
                     /locus_tag="ACFM6C_000444"
     CDS             complement(11080..12360)
                     /locus_tag="ACFM6C_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HFC6157947.1"
                     /translation="MKSLFIRLLLLGSAAGVFYHTQNQSLPAGELVYPSAPQIRDGGD
                     ALHYLNRIRAQIGLHKLAHAPVLENSARRHARYLTLNPEDGHGEHHPDNPHYTAQKLT
                     ERTRLAGYLYNGVHENISTEEEAAESSDSDIRTQQRQVDGLMSAIYHRLSLLDRHTDE
                     AGAAFVRENGKTVLVFNQGNGRFERHCAQGRNQPEAGRKYYRNACHNGAVVYTDEAMP
                     AQELLYTAYPVGNGALPYFHGERPDPVPEYEITGNPASIDFSEAAGKITMKSFKLYQG
                     KNEIRPVRVLTAGNDPNGRLTAYQFALFPLKPLEYGTLYTAVFDYVRNGRRAQAKWQF
                     RTRKPDYPYFEVNGGETLAVRKGEKYFIHWRGRWCLEACTRYTYRQRPGSRLSIGRHE
                     AGGIVFSVDGMAGSRITLAPEGETERGVTLYLQD"
     gene            12362..12490
                     /locus_tag="ACFM6C_000445"
     CDS             12362..12490
                     /locus_tag="ACFM6C_000445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157948.1"
                     /translation="MPSSRRGNGVFYQNGKLANAVSDCRLPNRQTFPRADAEPDAV"
     gene            complement(12513..13238)
                     /locus_tag="ACFM6C_000446"
     CDS             complement(12513..13238)
                     /locus_tag="ACFM6C_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HFC6157949.1"
                     /translation="METQNKPTVTDIDRPILVPPGGHKKVLLHSCCAPCSGEVMEAML
                     ASGIDYTIYFYNPNIHPHKEYMLRKEENVRFAEKFGIPFIDKDDDYENDRKEWFAKAK
                     GMEFEPERGIRCTMCFDMRFEKAAQYAHEHGFPVFTSSLGISRWKNMNQINDCGRRAA
                     APYDDVVYWDFNWRKGGGSARMIEISKRENFYQQEYCGCAYSLRDSNAHRKSQGRIPI
                     KLGVLYYGDESTQYEPAPIRVDK"
     gene            complement(13311..13988)
                     /gene="radC"
                     /locus_tag="ACFM6C_000447"
     CDS             complement(13311..13988)
                     /gene="radC"
                     /locus_tag="ACFM6C_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HFC6157950.1"
                     /translation="MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAV
                     DLARYLLQEFGSLGRLMSAEVGKLSAYKGTGTASFTQFAVVREIGRRILAEELQESIV
                     LSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVKELSRGTVAENTIYIREIVKL
                     ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSF
                     RQLGLMP"
     gene            14015..14137
                     /locus_tag="ACFM6C_000448"
     CDS             14015..14137
                     /locus_tag="ACFM6C_000448"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157951.1"
                     /translation="MPSETDVPTRQISEMPSEPDFRFRRHLYFKTVLRRFFQLD"
     gene            complement(14111..15460)
                     /gene="gshA"
                     /locus_tag="ACFM6C_000449"
     CDS             complement(14111..15460)
                     /gene="gshA"
                     /locus_tag="ACFM6C_000449"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HFC6157952.1"
                     /translation="MKLPVMSPEHSAQLQAFEAKILSNHAKIEAWFRTQWNAHRPPFY
                     GSVDIRNAGYKISSIDMNLFPGGFNNLNPNFIPLAAVAAQDAVQRACETAKSVLIIPE
                     NHTRNTFYLQNIYALGEILRSAGYEVRLGSLNPEVTEPTEFETALGDKILLEPLLRTR
                     DRVHLADGFSPCVVLLNNDLSAGIPDILKGISQTVLPPLHGGWTTRRKTNHFGAYNQV
                     TAEFAKLIGIDEWQINPYFEKIGGLDFQGREGEDALAEAVERVLAKIQAKYDESGITD
                     KPFVIVKADAGTYGMGVMSVKSADEVRGLNRKNRNKMAKVKEGLEVSEVIVQEGIYTY
                     ETLNGAVCEPVVYMMDRFVIGGFFRVHEGRGADENLNAGGMVFVPLSNSIPTGNGDNS
                     QEAPEACKRVFEQWDSLGMPRSEKDCDVDNEHNRLYVYGVMARLSLLAASIELEETA"
     gene            15720..17129
                     /gene="leuC"
                     /locus_tag="ACFM6C_000450"
     CDS             15720..17129
                     /gene="leuC"
                     /locus_tag="ACFM6C_000450"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HFC6157953.1"
                     /translation="MTAQTLYDKLWNSHVVREEEDGTVLLYIDRHLVHEVTSPQAFEG
                     LKMAGRKLWRIDSVVSTADHNTPTGDWDKGIQDPISKLQVDTLDKNIKEFGALAYFPF
                     MDKGQGIVHVMGPEQGATLPGMTVVCGDSHTSTHGAFGALAHGIGTSEVEHTMATQCI
                     TAKKSKSMLIAVDGKLKAGVTAKDVALYIIGQIGTAGGTGYAVEFGGEAIRGLSMEGR
                     MTLCNMAIEAGARSGMVAVDQTTIDYVKDKPFAPEGEAWDKAVEYWRTLVSDEGAVFD
                     KEYRFNAEDIEPQVTWGTSPEMVLDISSKVPNPAEETDPVKRSGMERALEYMGLEAGT
                     PLNEIPVDIVFIGSCTNSRIEDLREAAAIAKDRKKAANVQRVLIVPGSGLVKEQAEKE
                     GLDKIFIEAGFEWREPGCSMCLAMNADRLTPGQRCASTSNRNFEGRQGNGGRTHLVSP
                     AMAAAAAVTGRFTDIRMMA"
     gene            17226..17480
                     /locus_tag="ACFM6C_000451"
     CDS             17226..17480
                     /locus_tag="ACFM6C_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157954.1"
                     /translation="MNKLFITALSALALSACAGTWEGAKQDTARNLDKTQAAAERAAE
                     QTGNAVEKGWDKTKEAVKKGGNAVGRGISHLGGKIENATE"
     gene            17542..18183
                     /gene="leuD"
                     /locus_tag="ACFM6C_000452"
     CDS             17542..18183
                     /gene="leuD"
                     /locus_tag="ACFM6C_000452"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HFC6157955.1"
                     /translation="MKAFTKITAIVAPLDRSNVDTDAIIPKQFLKSIKRSGFGPNAFD
                     EWRYLDHGEPGMDNSKRPLNPDFSLNQPRYQGAQILLTRKNFGCGSSREHAPWALDDY
                     GFRAVIAPSFADIFFNNCYKNGLLPIVLTEEQVDRLFKEVEANEGYQLSIDLAEQTLT
                     TPSGETFTFDITEHRKHCLLNGLDEIGLTLQHADEIHAFEEKRRQSQPWLFNG"
     gene            18357..19627
                     /locus_tag="ACFM6C_000453"
                     /pseudo
     CDS             18357..19627
                     /locus_tag="ACFM6C_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223735.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
     gene            19643..20374
                     /locus_tag="ACFM6C_000454"
                     /pseudo
     CDS             19643..20374
                     /locus_tag="ACFM6C_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229413.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0009036 - type II site-specific
                     deoxyribonuclease activity [Evidence IEA];
                     GO_process: GO:0090304 - nucleic acid metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NgoBV family restriction endonuclease"
     gene            20408..21478
                     /gene="leuB"
                     /locus_tag="ACFM6C_000455"
     CDS             20408..21478
                     /gene="leuB"
                     /locus_tag="ACFM6C_000455"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HFC6157956.1"
                     /translation="MTKHIAILRGDGIGPEIVAETVRVLDKLIEQGLDVSYEYAPLGG
                     EAYDEYGHPYPEFTQNLCRKADAVLLGAVGSPQYDNLNRPLRPERGLLAIRKDLNLFA
                     NLRPAILYKELANASTLKPEIVAGLDILIVRELTGDIYFGEPRGIRVLENGEREGYNT
                     MKYSESEIRRIAHVAFQSAQKRSKKVCSVGKANVLETTELWREIFEEIGKQYPDVELS
                     HMYVDNAAMQLVRAPKQFDVIATGNIFGDILSDEASMLTGSIGMLPSASLDENGKGLY
                     EPSHGSAPDIAGENKANPLATILSLAMLLRYSLNDEARAQQVENAVQKVLQQGLRTND
                     IYEEGTKLVSCSEMGDAVLAAL"
     gene            21640..22203
                     /locus_tag="ACFM6C_000456"
     CDS             21640..22203
                     /locus_tag="ACFM6C_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HFC6157957.1"
                     /translation="MKKIIIAALAAAAIGTASAATYKVDEYHANARFSIDHFNTSTNV
                     GGFYGLTGSVEFDQAKRDGKIDITIPVANLQSGSQHFTDHLKSADIFDAAQYPDIRFV
                     STKFNFNGKKLVSVDGNLTMHGKTAPVKLKAEKFNCYQSPMAKTEVCGGDFSTSIDRT
                     KWGVDYLVNVGMTKSVRIDIQIEAAKQ"
BASE COUNT         5418 a         5878 c         5794 g         5279 t
ORIGIN      
        1 ggcatttcca aagggcattt taagccgtat ttgagagaat gcggatggcg ttttcagtgt
       61 tttcagcgtg ataaaattca aatttctatt ttaaaacaat cagcaaagca ggatttattt
      121 cagttgtccg agacaacggg cggctgcacc gcctgcactc cccatacttt ttcaatgcac
      181 tcgagcagga gtgagacgtg gggattatcc tcgtattctt ccgcataaat gaaattgagc
      241 ggcatactgt ggcggcacga ttcgataata gccacgcccg cgccttcttt tgccgccgct
      301 tcggctttgt ttcccggcac cattgccaca cctataccgc ctgcaaccaa atcgataatg
      361 gtttgggggt agtcgcacaa gatctgtttt ttgggtgaga gccggttgct gcgccaaaac
      421 tggtgcaggt gcttcctact tccggacacg cccgacattt ctatccatac gcattcttgc
      481 aggctctgcg gaagggagcg ggtcagatgg ggatattggc tttgcgggca aatcagcgcg
      541 taggtcaggt tttgcaggaa tacgctgcgg atgccgcgtt gggcggcgtt gccgagtata
      601 aagccgccgt gcagggtttt gtgttggatg cgcgagagga tttcgccgct cattccgtat
      661 tggatgtgca ggcgcgtttt gggggctgtt tgaccgatat tgtccgtcag cgcgacgagc
      721 tttgccgaat cgatggggtg gataatgccc aaactggtct cttccgaata atcgcctgcc
      781 agcgttttgg caaaatactc caacttgtgt ttgtattgca gcagggattc cgcttcgggc
      841 aacagtattt cgcccgcccg cgtcaatacc atgcctttcc ccgtgcgcct gaacagcggc
      901 gtgccgacat attcttcaag ggctttaatt tgggcggaaa cggcaggctg ggaaaggaaa
      961 agtcgtttgg cggcttgggt aaggttgccc tcgtgcgcga cggcgacaaa tgattttaat
     1021 tgtacggcat ccatatatcc ctccttgtgc ggatgttttc tatatttgtg caatcgaaat
     1081 cttttaggcg gattgttgct gaaaattaac tttttaatca agtggtttgt aaattgtatc
     1141 aattttccgg atgatggtta ttaaaaaaaa agattggttt tattgcctgt ttgggcttta
     1201 aatggggtta cggcttccga acgcagcccg tatcaaaaag aaaagtcatg cgcccctttt
     1261 acgaggcgcg atatataagg aggaaggtta tggaaaaaca taatgggact tatcgggatt
     1321 tgcaccgtcc ggcttcggaa tttgcgacgc gggacgaata tttggaacat gaattgcaga
     1381 ttatgcaacc aaaacgctgg cggcccaacc tgccctttcg cgattaccgc ttcgagtggg
     1441 aggatttgat tcctgcgatg gcgggaacga ttggaaaagt ggtgatggtg ggggcggtgg
     1501 cggcggcgtt tgccacacct ttggggctgc ctgacagctt tgtactggaa aatgtgcgct
     1561 atgagctttt aatcgccgcc gcgtttatct tattggtatc gggctttttt ctgcccggcg
     1621 ccaacctgcc cggtacgcac gggccgctga ttccgatgat tcccatcgtt gtgtcggcag
     1681 gcgggcatcc tttggcgttc ggcatttcga ttgcggtttt aggtctgctg atggctttat
     1741 ttcgcggcgg cagtattatg gcgaagctga caagcaacgg cgtatgcggc ggattattac
     1801 tctatttggg ctttatcggc acgacggggc aggtaaaaaa attgttttcg tgggcaggcg
     1861 gttttaatat gccctacatc gcttttaccg tcattattgt aacgattgtg atgtacgctt
     1921 tgttggagca ttggaaaaaa cgctggttag ccgtgccttt gggatgcttg attgccggtg
     1981 tggtggcatt tgcattgggt gcgccgtttg agtttcacac cgcccccggc ctgcctccaa
     2041 tgagtcctgc ttattggtgg ggtgaaaaca gcggctggca tctggggttg ccgacggcag
     2101 aaagtttttt ggttgtcttt ccatttgcgg tattggctgt tgcaatgtgg tcgcccgatt
     2161 ttttaggaca tcaagtgttc caaaaaatca gctatccgga aaaaaccgat aaggtattga
     2221 tgaatataga cgacaccatg acaagttgtt ctgtccgtca agcagtgggt tctattttag
     2281 ggggtgcaaa ttttacctct tcttggggaa cttatatcgt accggcatcg attgccaaac
     2341 gccccattcc gggcggtgcg gttttaacgg cggttttatg tattatcgcc gggttatggg
     2401 gctatccgat ggacttggcg atttggcagc cggtattgag cgtagccttg gtcgtaggcg
     2461 tatacttacc gcttttggaa gcgggcatgg aaatgacgcg caaaggcaaa accacccaat
     2521 ccgccgccat cgtggtgttc tcttccgcct tggtcaatcc ggttttcggc tgggcgttga
     2581 cgatgctgtt ggataatttg ggcttaatcg gctgcaaaga gcgcagtgcg caattaggtt
     2641 tcgccggacg cgtgttgata cccgcagtag gtttcttgat cttgtgtgtg gcgatgggtg
     2701 cggtcgggat gctgcccggt atcccgccgt ttttggaaca cttcaaatct ttgggctagg
     2761 ctgaaatcgg aaatgccgtc tgaaccgctt tcagacggca tttttgcaaa caggcaaaat
     2821 gacggcggcg ggatttttta ttttcccgat tgaagtataa tgttgccggg cttcaaccgg
     2881 atattcaaaa cggtttgttc caacactcgg aacggcgcat aaaacgccgc ccttcgcgtt
     2941 atcccgaacg gggcggctaa tcaaattcta tcgccataaa aggcggggtt tcaaccgaaa
     3001 aggaattgag atgaataaaa ccttgtctat tttgccggtg gcaatcttac tcggcggctg
     3061 cgccgccggg ggcggtaaca cattcggcag cttagacggc ggcacaggca tgggcggcag
     3121 catcgtcaaa atggcggtcg ggagccaatg ccgtgcggaa ttggacaaac gcagcgaatg
     3181 gcgtttgacc gcgctggcga tgagtgccga aaaacaggcg gagtgggaaa acaagatttg
     3241 cgcttgcgtc gcccaagaag cacctgaacg gatgaccggc aacgatgtga tgcagatgct
     3301 ggattcgtcc acgcgcaatc aggcacttgc cgccctgacc gccaaaacgg tttccgcctg
     3361 cttcaaacac ctgtaccgct aaccttcttc agacggcatg aggcagatac cgtctgaagc
     3421 cgttttcctg caatttcgac agacgagaaa aatcatgaaa tacatcagca cgcgcggcga
     3481 aaccgcacac aaaccgttca gcgaagtttt attgatgggg cttgcacccg acggcggcct
     3541 gatgctgccg gaacattatc cgcaaatcgg gcgcgaaacc ttggacaaat ggcgcggttt
     3601 agcttatccc gaattggcgt ttgaaattat gcgcctgttt gttacggata ttccggagga
     3661 cgatttgcgc gacattctga accgtactta cacggaagcg gcgttcggta ctaaggaaat
     3721 cacccccgtc cgcacgcttt cagacggcat caaaatccaa gccttgtcca acggcccgac
     3781 gctggcgttc aaagatatgg caatgcagtt tttgggcaat gcgtttgaat atgttttaaa
     3841 caaagaaggc aaaaaactca atatcttggg cgcaaccagc ggcgatacgg gttcggctgc
     3901 ggaatatgcc ttgcgcggca aaaaaggtgt gaatgtattt atgctgtcgc ccgatggcaa
     3961 aatgagcgcg ttccaacgcg cgcaaatgta cagcctgcaa gacgggaata tccacaatat
     4021 cgccgtgaag ggaatgtttg acgactgtca ggatattgtg aaggcggtgc agaacgatgc
     4081 cgcgttcaag gaaaaatacc atatcggtac ggtcaattcg atcaactggg gacgcatcgt
     4141 cgcgcaagtg gtttattact ttgcaggcta tttcaacgcc acttcaagca atgacgaaac
     4201 cgtcagcttc tgcgtaccga gcggcaactt cggcaacgtt tgcgcgggac atattgccaa
     4261 acagatgggc ctgcctgtcc gccgcctgat tgttgcgacc aatgaaaacg atgtgttgga
     4321 cgagtttttc aaaaccggcg cataccgccc gcgcaacagc gcgcatactt atgttacctc
     4381 cagcccgtct atggacattt ccaaagcgtc caacttcgag cgtttcgtgt tcgacctgat
     4441 ggatcgcgat cctcaggaaa tcaatacgct gtgggcggaa gtagcggcgg gcaaaggctt
     4501 tgacctgcgg tttgctttag aaaaagtcgg tggcaaatac ggttttacct ccggcaaatc
     4561 cacccacccc gaccgcctcg ccaccatcag acaggtttat gagcaagacc aagaactcat
     4621 cgacccgcac actgccgacg gcgtaaaagt cgcccgcgaa gtgcgcgaag aaggggaaac
     4681 ggttgtgtgt ttggaaaccg cgttggcagc gaaattcgat gcgaccatac gcgaagccgt
     4741 cggcgatgcc gccattccgc gccctgccgc gctggaaggt ttggaaaacc tgccgcagcg
     4801 cgtgcaaacc gtgccgaaca gtgcggatgc ggtaaaaggc atcatcgaac aaacccttgc
     4861 ctgatattcc gtacaggggc attccgtccg aacttaagat tgaaagaaaa tgaccttacc
     4921 tatgcaggaa acccgttttt ctatactgct ggacgaactg gcggcaaaac aggaggcagc
     4981 catcgctccc cacctgcttg ccgacggaac caaggtatgg gtacgcaaag caggcaggca
     5041 caatgcgcgg tggcgttacg cgctgctcgg tatggttgcc cgatatttga aactgggggt
     5101 gttgaagccg gttcccagcc tcggcggcga gcctgccatt acaaccgaat caaaacgcct
     5161 gtacgaattg cgctcggcgg ggatagccgt tcccgaattg ctcgccgtca ggaaaaatgc
     5221 ccttatgttc ggcaatttgg caggcatccc gctcgatacg caaatccgcc aagaagccga
     5281 agccggaaag gcggacgctt ggcttgccgg tttggaagcc attgcacgcg tgcataaaaa
     5341 acagcagttc ctcagtcagg cgtttgcgcg gaatatgatg tcggacggaa aaaacatcag
     5401 ctttctagat tttgaagacg acccttccga agtcctgacc atagcgcaat gccaagcccg
     5461 cgattggctc tgctacatcc attcgaccgc gctgatattg aaaaacggcg gactgctgga
     5521 agcggctgcg gaaaaatggg gcggcgtact gtctgagcag cctgccgaaa tacaaaggct
     5581 gattgccgcc accgtcaaac cgatcctccc gatacgcagg ctggaacacc cccgctgggg
     5641 acgggacgcg ctcaggctgg cagcctcgat ttccctgatt tcccttgccg atataccgcc
     5701 ataagccgcc gcctgccccg cgatgccgtc tgaagccctt cagacggcat ataaccaacg
     5761 cgcatcaagc attgtcgcaa ccatccgttt cgtttagaat tttggcttta ccccgaatcg
     5821 ggcagacatt ttcactctgc cgcacatccc gaacaagcac tatccatttc ttttactgac
     5881 aggaaaccca aatggcagca ttcaataccc aaaaagtatt gtccgtacac cactggacag
     5941 acgcatattt tacctttacc tgcacccgcg acgaatcgtt gcgctttgaa aacggacagt
     6001 tcgttatggt cggattgatg gtggacggca agccgctgat gcgtgcatac agcgtcgcct
     6061 ccgccaactg ggaagaacac ctcgaatttt tcagcattaa agtccaagac ggcccgctga
     6121 ccagccgcct gcaacacctc aaagtcggcg acgacgtgtt aatcagcaaa aaaccgaccg
     6181 gaactctagt tgccggcgac ctgaatccag gcaaacacct ttacttgttg agcaccggta
     6241 ccggcatcgc ccctttcttg agcatcacca aagaccccga gatttacgag caatttgaaa
     6301 aaatcatcct cgtacacggc gtgcgctaca aaaaagattt ggcgtactac gaccgcttta
     6361 ccaaagaatt gcccgaacac gaatacctcg gcgacttggt taaagaaaaa ctgatttact
     6421 acccgattgt ttcccgagaa gaattcgaac accacggccg cctaaccgac ctgatggtga
     6481 gcggcaaact gtttgaagac atcggcctgc ccaaaatcaa tcctcaagac gaccgcgcga
     6541 tgctgtgcgg cagccccgcg atgctgaaag atacctgcaa agttttggac gatttcggac
     6601 tgaccgtctc tccgaaaaca ggcgtacgcg gcgattacct gattgagcgt gcgtttgtag
     6661 atcaataagc tgtttgaaaa tcccgtctga acggcaccag caatcaaaaa ccccgaatcc
     6721 tgccaatcag gattcggggt ttttatagtg aattaaattt aaatcaggac aaggcggcga
     6781 gccgcagaca gtacaaatag tacggcaagg cgagccaaca ctgtaccggt ttaaatttaa
     6841 ttcactatat agtgggtaaa aattagaaat acacatttcc gtcattcacg cgcaggcggg
     6901 aatccagacc tatccgttaa ttagcatttg aaaataaaag aaaaaccaag catatggatt
     6961 cccccctacg cgagactgac gacggtgttc tgcagtagcc aaagcagaaa accatcctta
     7021 ttgtcatttc atcatgatat aacaataagg atgttaaaaa ttagttatca ttatatgcat
     7081 gatatataag aaaaattgtc ccaataagaa atgttatgca gaaaataaaa tgaaaaggat
     7141 ggttttcatt gaaaatggtt gttctgccac cgtcatacac agaaccggta tttggaaaaa
     7201 aaataatcca tattgacatc attattccat ttatcgcata aatccacttt ttaatttttt
     7261 tcctcattaa tacaatctct tatttaataa aatcaaatac ctagcaattc gatctcaaat
     7321 tttgaacgcc aacgtgtttg agcggtaaca atacatactt taagtttgca attcttcatc
     7381 gtcttatttt tgttttcatc aactatacgt ctaaagcaac gccgtccgtc attgttcgga
     7441 cggcattttt tcagactgca ttttcccccg tttgtgaagg cgcagggcgt tgcccaaaac
     7501 cgccagcgaa ctgaagctca tacccagtgc ggctatccac ggttggacat agcccaaaac
     7561 ggcaagcggt acggcaatga tattgtacgc gcccgcccat atcaggtttt gccggataat
     7621 atggcgggtg cgccgcgcct gatcgagcag gtgggcgacg gtacgcaaat cttcgttcaa
     7681 taacacaatg tccgcgccgt ccctcgcaat atccgtcccg cccgctgcgg cggcggatac
     7741 gtctgcctgc gccaaaacgg gcgcgtcgtt gatgccgtcg cctatcatca gcactttttt
     7801 cccttctttt tgcaaggctt tgacgtattc cagtttgtcc tcgggcatgg cttgggcgcg
     7861 gtagtgcgcg acacccaggg cgcgtgcggt ttcggcaacg gcggtttcgc ggtcgccgct
     7921 gaggatgtgc agggtcaggt ttttgcctgc caactgccgc accgcctccg ccgcgctgtc
     7981 tttcaagggg tcggtcaggt agaacacggc ttggaaaccg ctttgactgc cgaggtaaac
     8041 cgcgctgccg ccgccttctg tttgcggttc tttacctgaa atttcggcga cataggatgc
     8101 cctgcccaat gcccaaacct gtgtttcgcc gttgacggtc agttgcgcgc ccacgccttc
     8161 gccgatgcgg ttgaggcgtt gtttaatagc aatgtcgggg acgctgccgt ctgaaacacg
     8221 gtgtttgagg atggcgcggg caaggggatg ttcggactgt tgttctaaag cctgcgccac
     8281 cgcgagaaca aaggcttcgt ctgtgcctct caacaatgag atacggcgga cggcgggatt
     8341 gccttgggtc agcgtgcctg ttttgtcgaa aatgatgtcg gtggtttggg cgagggtttc
     8401 gattgcctgc tttccgccga ttaaaatacc ttcgcgcgcc agcgtaccgg tagaagctgc
     8461 cagcgcggtc ggcgtggcaa gcgataaggc gcaggggcag gtaatgacca gcagggcgac
     8521 ggtaatccac aatgcggtgt gcgcgtcggc gtacagcgtc cagccgatga agacggggac
     8581 ggcaagcagg agttcgccga atatgaaaga cgaggcgtat tgttccgcca actcggcagt
     8641 gcgcggtttt tgcgctaagg cgcggtcgag caggcggacg atgtgcgaca gtcgcgtgcc
     8701 gccgccggtg cggtcggtgc gtataatcag ggggctttgc gtgttgagtg tacctgcggt
     8761 tactttttca gacggcattt tggcgacggg caggctctcg ccggtcagca tagattcgtc
     8821 aaccgtgctt gcgccttcca gcaccgtgcc gtcaatgggg atggtttcgc ccggtttgac
     8881 cagcacgata tcgcccgcct tcaacttgac gacagctgcc tcgcaggttt cctgcgtatc
     8941 ggggtaatcg ggcatatgat ggcaaaacgc aggaatcagc ttcaccagcc tctcggcggc
     9001 atcgcctgcc ttacggcggg caatgtgttc cataaagcgt ccgcccagca ggaaaaacag
     9061 cagcatggct atggattcga aatacatccc ctgccccgca ttggtcgcaa ggctgtaaac
     9121 gccggcgata aaggtcatga tgatggcgac ggcaatcggc gtatccatgc cggcgcggcg
     9181 gtttttcagg tcgcgcaacg cgccttgata aaacgggacg gcgcaataga atacgacggg
     9241 cagcaccatt aaaaagccgc cccaatggag gatttgcagg aaatcgggtt cgatgtcgcc
     9301 gccgtaaagg taggtcggca gcgcgaacat catcgtctgc atcatcccca gcccggcaac
     9361 ggcgaggcgg acgatgtatt gtttgcgttc tttttggttg gcggcttcga ttttttgcgc
     9421 gtcatagggt gcggcggtgt agcctatctg cctgattttc aacagaatgt cggaaaggcg
     9481 gattttgccg tcgtcccaga cgacgcggca gcggtgcgtg ctgtaattga ggtcgatgcg
     9541 gacgatgccg tctgtacgca aaagctgctg ttcgatcagc cagacgcagg cggcgcaggt
     9601 gatgccgccg agcattaaaa ccgcctcgcg cgtgccgccg tgggtttcca caaagtcgga
     9661 ctggacttcg ggcaggtcgt acaggcggat ttggtcgagg atttcttggg gcggcagctc
     9721 ggttttttgc gcgtcggcgg tgcgttgttt gtaataactg cccaagcccg cgtcaataat
     9781 gctttgtgcg accgcctgac agccggcgca gcaggtttcg cggtcttcgt tttcgtaacg
     9841 gacagtcagg tggaggtgtt cgggaacatc cagaccgcag tggaaacagg tttttttcat
     9901 ggcatttcgg tttcgtctgt gtttggtgcg gcggcacaag actcggcaat ggcttcgcgc
     9961 agtgcgtcta taccggtatt ttcagcaacg gaaatgcgga cggcggcaat ttttcccgca
    10021 gcgtcgcgcc atatgcccgt gttttgttct tcagacggca gcaggtcggt tttgttgtac
    10081 accttgatgc acggaatatc gccggcatgg atttcttgca gtacgttttc cacgtcttca
    10141 atctgctgtc cgctgttcgg agcggcggca tcgacgacgt gcagcagcac atcggcttgc
    10201 gcggtttctt ccagcgtggc ggaaaaggcg gaaatcagtt tgtgcggcag atcgctgacg
    10261 aatccgacgg tatcggtcag gataatgctg cattcgggac tgatgtacag ccgccgcgcc
    10321 gtcgtgtcga gtgtggcgaa aagctggtct ttcgcatata tgcccgactt ggtcagccgg
    10381 ttgaacaggc tggatttgcc gacattggta tagccgacca gcgcaaacgt tttgattgtg
    10441 cccgattcgc gggacttgcg gcgcagggcg cgctgttttt tgaggttggc aagctgtttt
    10501 ttcaaggcgt tgatccgatg ggcgatcaat cggcggtcgg tttccagttt ggtttcgccc
    10561 ggccctttca tgccgatacc gccgcgctgg ctctgcagat ggccgtaacc gcgtatcaag
    10621 cgtcccgcca aatggctcaa ttgtgccaac tcaacttgca gcctgccttc ctgcgtgcgg
    10681 gcgcggcggg cgaaaatcgc caaaatcaac cctaccctgt ccagcacgcg gcatttcagt
    10741 tctttttcaa ggttgcgttc ctgcgtgggc gtaagttcat ggttgaatac gaccaaatcg
    10801 atgccgtctg cggcaactgc ttccgacagc tccgccgcct tgcccgtgcc gacaaacagc
    10861 gcggtgtgcg gacggtcgcg tttggcggtt tccacaagga cgggattgcc gcccgccgcc
    10921 ttgaccagct cgacggcttc cgccaatgcc gtctgaaagc cgttcagacg ggcggtactg
    10981 ctgcccgtac cgtctttgtc caacattacg cccaccagca tgacgcgttc gggttgcgct
    11041 tgggtactgc cgttgcggcc tgttctgcct gtcatgtatt caatcctgta aataaagggt
    11101 tacgcctcgt tccgtttctc cttccggtgc aagcgtgatg cggctgcccg ccattccgtc
    11161 aacgctgaag acgatgccgc ccgcctcgtg ccttcctatg gacaggcggc tgccgggtcg
    11221 ctgccggtag gtataacggg tacacgcttc caaacaccag cgtccgcgcc agtggatgaa
    11281 atatttttcg ccttttctaa ccgcaagtgt ctcgccgccg tttacctcaa aataagggta
    11341 atcgggtttt cgggttctaa actgccattt cgcctgcgcg cgccgtccgt tgcggacata
    11401 gtcgaatacc gccgtataaa gcgtaccgta ttccaaaggc ttgagcggga aaagcgcgaa
    11461 ttggtacgcg gtcagcctgc cgttggggtc gttgccggcg gttaaaaccc tgacggggcg
    11521 gatttcgttt ttaccctgat acagcttgaa acttttcatc gtaattttgc ctgccgcctc
    11581 ggaaaaatca atgctggcag gattgcccgt gatttcatat tccggcacgg ggtctggacg
    11641 ctcgccgtgg aaataaggca gtgcgccgtt gccgacggga taggctgtat agagcagctc
    11701 ctgtgcgggc atggcttcgt cggtgtacac gaccgcaccg ttatggcagg cgttgcggta
    11761 atatttccgt cctgcttccg gctgatttct gccttgggcg caatgccgct caaacctgcc
    11821 gttgccctga ttgaatacga gaacggtttt accgttttcg cgcacaaatg ccgctcctgc
    11881 ctcatccgta tggcggtcaa gtagggaaag gcggtggtag attgcgctca ttaatccgtc
    11941 cacttggcgt tgctgcgtgc ggatgtcgct gtcggacgat tcggcggctt cctcttccgt
    12001 gctgatgttt tcatgcacgc cgttgtagag atacccggca aggcgtgtgc gttcggtcag
    12061 cttttgtgcg gtgtagtgcg gattgtcggg atggtgttcg ccgtgtccgt cttcgggatt
    12121 gagcgtgaga tagcgtgcgt gcctgcgggc ggaattttcc aaaaccggcg cgtgtgccag
    12181 cttgtgcaaa ccgatttggg cgcggatgcg gttgaggtag tgcagcgcat cgccgccgtc
    12241 cctgatttgc ggtgcggacg gatagacaag ttcgcccgcg ggcagggatt ggttttgggt
    12301 atgatagaaa acgccggccg ccgaacccaa caggagcagc cgaataaaaa gggatttcat
    12361 aatgccgtcc tcccgacgcg gcaacggggt gttttatcaa aacggcaaac ttgccaatgc
    12421 ggtttccgat tgcagattgc caaaccggca aacctttccc cgtgccgatg ccgaacccga
    12481 tgccgtctga actttcagac ggcatcgggt gtttatttgt ccacccggat gggtgcaggt
    12541 tcgtattgtg tcgattcgtc gccgtaatac agcacgccga gtttgatggg gatgcgtccc
    12601 tgcgatttgc ggtgggcatt ggaatccctc agggaatagg cgcaaccgca atattcctgc
    12661 tggtagaagt tttcgcgttt gctgatttca atcatgcgcg cgctgccgcc gcctttgcgc
    12721 cagttgaaat cccaatacac cacatcatcg taaggcgcgg cggcgcggcg gccacagtcg
    12781 ttaatctggt tcatgttttt ccaacgggaa atgcccagcg agctggtgaa gacggggaac
    12841 ccatgttcat gcgcgtattg cgcggctttt tcaaaacgca tatcgaaaca catcgtacag
    12901 cggatgccgc gttccggctc aaactccata cctttggctt tggcaaacca ttctttgcgg
    12961 tcgttttcgt aatcgtcgtc tttgtcgatg aaggggatgc cgaacttttc cgcaaagcgc
    13021 acgttttcct cttttctgag catatactct ttgtgcggat ggatattggg attgtaaaaa
    13081 taaatggtgt agtcgatgcc ggaggcaagc atcgcctcca tcacttcgcc gctgcacggg
    13141 gcgcagcagg aatgcagcaa gactttttta tgtccgccgg gcgggacgag tatggggcgg
    13201 tcaatgtcgg taacggtagg tttgttttgt gtttccatta acttaacaat atctgtcgaa
    13261 tacggttgaa gcggctattt tatcagagcc gccgcatgta aaacagggtg tcagggcatc
    13321 agcccgagct gcctgaacga acggacggtt tgcgccgtta cgataaaatg gtcgagcagc
    13381 gacacatcga ccagcgacat tgcctgtgcc agccgccttg tgaacatgat gtcttcctgc
    13441 gaaggttcgg gcgagccgcc cggatggttg tgcgcgataa tcaggctgtc ggcatactcg
    13501 tccaaagcca gtttgacgat ttcgcggatg taaatcgtgt tttccgcaac cgtaccgcgc
    13561 gacagctctt tgaccgcaat cagttggttt tggcggttca gcagcagcgc gacgctgact
    13621 tcgacttttt cctgccccaa atgaaagcgt aaataatcgg ccaccgtatc cggatcggac
    13681 aggacgatgc tctcctgcaa ttcttccgcc aatatccgcc gcccgatttc cctgaccacg
    13741 gcaaactgtg tgaaacttgc cgtccccgtc cctttgtatg ccgacagttt gccgacctcc
    13801 gcgctcatca gcctccccaa actgccgaac tcctgcagca aataacgcgc caaatcgacc
    13861 gcactcattc cgcgcgtgcc gacgcgcagc aggattgcca aaagttcggc atcactcaac
    13921 gccgccgccc cgcgttccaa cagcttttcc ctgggtcttt cgccttccgg ccattgcttg
    13981 atgctcatgt tttccctttt ttaaatagtc tgagatgccg tctgaaacag atgttcccac
    14041 acgccaaata tccgaaatgc cgtctgaacc ggatttccgc ttcagacggc atctgtattt
    14101 caaaacagtc ttacgccgtt tcttccaact cgattgaagc cgccagaagc gacaggcgtg
    14161 ccattacgcc gtaaacgtag aggcggttgt gttcgttgtc cacgtcgcag tctttttcag
    14221 agcgcggcat acccagcgag tcccattgtt cgaatacgcg cttgcaggct tcgggcgctt
    14281 cttgggaatt atcgccgtta ccggtaggaa tgctgttaga cagcggaaca aacaccatac
    14341 cgccggcgtt gaggttttcg tccgcaccgc gcccttcgtg tacgcggaaa aagccgccga
    14401 tgacgaagcg gtccatcata tacacgacgg gttcgcacac cgcgccgttt aaggtttcat
    14461 aagtataaat cccttcttgg acaatcactt cgctgacttc caaaccttct ttgacttttg
    14521 ccattttgtt gcggttttta cggttcaagc cgcgcacttc atccgcagat ttgacgctca
    14581 tcacgcccat gccgtaagtg ccggcatcgg ctttgacgat gacgaaaggt ttgtcggtaa
    14641 tgcccgattc gtcgtatttg gcttgaattt tcgccagcac acgttctacc gcttccgcca
    14701 acgcgtcttc gccttcacgc ccttggaagt ccaaaccgcc gattttttca aaataagggt
    14761 taatttgcca ttcgtcgatg ccgattaact tggcaaattc ggcggtaact tggttgtacg
    14821 cgccgaaatg atttgttttg cggcgcgtcg tccaaccgcc gtgcaacggc ggcaaaacgg
    14881 tttggctgat gcctttgagg atgtcgggaa tgccggcaga caaatcgttg ttcaacaaaa
    14941 ccacgcaagg cgaaaagccg tctgcaagat ggacgcggtc gcgggtacgc aataaaggtt
    15001 ccaacaggat tttgtcgccc aatgcagttt caaattcggt cggttcggtt acttccggat
    15061 tcaggctgcc caagcgcact tcataccctg ccgaacgcaa aatctcgccg agggcgtaaa
    15121 tgttttgcag gtaaaacgta ttgcgcgtgt ggttttcggg aataatcaat acggatttcg
    15181 ccgtttcgca ggcgcgttgc accgcatctt gcgcggcaac cgccgccagc gggataaagt
    15241 tgggattcag attattgaag ccgccgggga acaaattcat atcgatagac gaaattttgt
    15301 aaccggcatt gcgtatatcg accgaaccgt aaaacggcgg gcggtgcgcg ttccactgcg
    15361 tgcggaacca cgcctcgatt ttggcgtgat tggacaggat ttttgcctca aacgcctgaa
    15421 gttgcgccga atgttcgggc gacatcaccg gtaatttcat ctttcgtctg cctctgtgtg
    15481 ttttttgaca agatgcagat gataatgcct ttgaaagaat gacgacaagt attctttcgt
    15541 atcgaatcat gctttagata taactgttta ctgaaatgga caatatgtct aattttttcg
    15601 ttaaaattgt ttgcaaaata acaccggctc aaaaattaga caaaatttgt tgcgcggtat
    15661 aaagaatacg tctaaaatcc gcccaatccg cattaccatt tatccaaaag aacaacatca
    15721 tgacagcaca aaccctctac gacaaacttt ggaacagcca cgtcgtccgc gaagaagaag
    15781 acggcaccgt cctgctctac atcgaccgcc atttggtgca cgaagttacc agccctcagg
    15841 catttgaagg cttgaaaatg gcggggcgca agctgtggcg catcgacagc gtcgtctcca
    15901 ccgccgacca caacaccccg accggcgatt gggacaaagg catccaagac ccgatttcca
    15961 agctgcaagt cgatactttg gacaaaaaca ttaaagagtt tggcgcactc gcctattttc
    16021 cgtttatgga caaaggtcag ggcatcgtac acgttatggg ccccgaacaa ggcgcgaccc
    16081 tgcccggtat gaccgtcgtc tgcggcgact cgcacacttc cacccacggc gcattcggcg
    16141 cactggcgca cggcatcggc acttccgaag tcgagcacac catggcgacc caatgtatta
    16201 ccgcgaaaaa atccaaatcc atgctgattg ccgttgacgg caaattaaaa gcgggcgtta
    16261 ccgccaaaga cgtggcactt tacatcatcg ggcaaatcgg cacggcgggc ggcacgggtt
    16321 acgccgtcga gttcggcggc gaagccattc gcggcctttc gatggaaggc aggatgaccc
    16381 tgtgcaatat ggcgatcgaa gccggtgcgc gctcaggcat ggttgccgtc gaccaaacca
    16441 ccatcgacta cgtaaaagat aaacccttcg cacccgaagg cgaagcgtgg gacaaagccg
    16501 tcgagtactg gcgtacgctg gtgtctgacg aaggtgcggt attcgacaaa gaataccgtt
    16561 tcaacgccga agacatcgaa ccgcaagtca cttggggtac ctcgcctgaa atggttttag
    16621 acatcagcag caaagtgccg aatcctgccg aagaaaccga tccggtcaaa cgcagcggta
    16681 tggaacgcgc ccttgaatac atgggcttgg aagccggtac gccattaaac gaaatccccg
    16741 tcgacatcgt attcatcggc tcttgcacca acagccgcat cgaagacttg cgcgaagccg
    16801 ccgccatcgc caaagaccgc aaaaaagccg ccaacgtaca gcgcgtgttg atcgtccccg
    16861 gctccggttt ggttaaagaa caagccgaaa aagaaggctt ggacaaaatt ttcatcgaag
    16921 ccggttttga atggcgcgaa ccgggctgct ctatgtgcct cgccatgaat gccgaccgcc
    16981 tgaccccggg tcaacgttgt gcctctactt ccaaccgtaa ctttgaaggc cgtcaaggca
    17041 acggcggacg tacccacctc gtcagccctg ccatggcagc cgcagccgca gtgaccggtc
    17101 gctttaccga catccgcatg atggcgtaag tattttcagg cggtctttaa gaatttgacg
    17161 cggccgtctg aaatatgtcc cgtaaggcag aaacaccttt aatattcaaa ccaaggagtt
    17221 taaccatgaa caaacttttc attaccgccc tgtccgccct cgccttgtcc gcctgcgccg
    17281 gcacttggga gggcgcgaaa caagacaccg cccgcaacct tgacaaaaca caggccgccg
    17341 ccgaacgcgc cgccgaacaa acaggcaacg ccgtcgaaaa aggctgggac aaaaccaaag
    17401 aagccgtcaa aaaaggcggc aatgccgtcg gacgcggcat ttcccatctc ggcggaaaaa
    17461 tcgaaaacgc caccgaataa ccgattcgcg atgccgtctg aaaccgcttc agacggcatc
    17521 gtcagcacaa gacgcaaacc catgaaagcc tttaccaaaa ttaccgccat cgtcgccccg
    17581 ctcgaccgca gcaacgtcga taccgacgcc atcatcccca aacaattttt aaaatccatc
    17641 aaacgcagcg gcttcggccc caatgccttt gacgaatggc gttacctcga ccacggcgaa
    17701 ccaggcatgg acaacagcaa acgcccgttg aaccctgatt tctcgctgaa ccagccgcgt
    17761 taccaaggcg cgcaaatcct gttgacgcgt aaaaacttcg gttgcggctc ttcacgcgaa
    17821 cacgcccctt gggcattgga cgactacggc ttccgcgccg tcatcgcccc cagcttcgcc
    17881 gacatcttct ttaacaactg ctacaaaaac ggccttttac ctatcgtgtt gaccgaagaa
    17941 caagtcgatc ggcttttcaa agaagttgaa gccaacgaag gctatcagct ctccatcgac
    18001 cttgccgaac aaaccctgac cacaccaagc ggcgaaacat tcacattcga cattaccgaa
    18061 caccgcaaac actgcctctt aaacggcttg gatgaaatcg gtctgaccct gcaacacgcc
    18121 gacgaaattc acgccttcga agaaaaacgc cgccaaagcc agccttggct gtttaacggt
    18181 taagcctatg ccgtctgaag gccgttcaga cggcattcct gataacatat aattgttgcg
    18241 gctaatgtaa acagaggggc gataaattgc tttcatcttt taagcgggct tagcgacact
    18301 ctaaattaat gcaataatgc aactctccat ttcaaataaa tttttagatt tttaatatgc
    18361 aacaaattaa atttattgac ttattttccg aaatgagtgg catcaggaaa ggattcgaac
    18421 aagcctgtcg gaaacagtcg gttgcttgcg aatgtgtttt tacttcagaa atcaaaccgg
    18481 cagctttgga agtattgaag caaaactacc ctgatgaagt gccgtatgga gatataacga
    18541 aaattgaaac aggggatatt cccgattttg acatcctgtt ggcaggcttc ccttgtcagg
    18601 ctttttcttt cgcctgaaaa agattaggct ttgaagatac acggggaacg cttttctttg
    18661 atgtggcaag gattttaaag gcaaaaaaac caaaaggttt tattttggaa aatgtggaag
    18721 gattggtgac acacgataga aaagattcga cacaaaaaat agggcgcacc ctgaccgtta
    18781 ttttggaaac cttggaagca ttgggctact atgtttcttg gaaagtttta aatgcaaaag
    18841 atttcggcat tccccaaaac aggaagcgca tttatctgac aggcagtttg aaatccaaac
    18901 ccgacttatc tttcgaaaca agcccaagtc cgaaattaaa aaatattttg gaatcgggac
    18961 tgcctaccga aagcagccct ttcatcaaaa aattgctaaa aaaatttccc ccgtccgaac
    19021 tgtacggaaa atcagtaaaa gacaaacggg gagggaaaaa caatattcac agttgggata
    19081 ttgaattaaa aggcgcagta accgaagaag agaagcaatt gttaaatatc cttctaaaag
    19141 aacggaggaa aaaaaatggg cttcagaaat cggcatagat tggatggatg ggatgccttt
    19201 gacaaaagcg caaatttcaa ctttctataa acaccccgat ctccaaaata ttttggacag
    19261 cctgacagat aaaggctatt tggttttaga gcatccgaaa caaaaaattg gcgggcaaag
    19321 aatcaaagat gaatccctgc ccaaaggcta caatattgtt tcaggcaaaa aatcttttga
    19381 aatcaataaa atattagatc aaaacgatgt tgcgccaacc ttggttgcaa tgaatatgga
    19441 gcaccttttc gtcgttgaca acggcggttt gcgtacactt accggaaaag aagggttgcg
    19501 cttattcggc tatccggacg attattcgtt tgatattccc aaaaaagaca gatgcgattt
    19561 attgggtaat accgttgccg tccctgtgat taaggcggta tctgaaagac ttctgcatac
    19621 tttataaacc gacagggata aaatgataaa acttactgca caacaaatat ttgataagtt
    19681 gctggatgaa gaaaaaatct tatcggccaa tggtcaaatt agatttttct taggcgatgt
    19741 ggatattatc gtcaaacaaa aagatgttgt cggcaacatc attcaggaat ggcttggcgg
    19801 atgattgaga aaaagggaaa ttgaatttga tgtttcaacc aatacccaaa tgcctcccga
    19861 tttcttttta aataaaaaag accgcagcag agaattgttg gaagtaaagg cgttcaaccg
    19921 aaatgccggc ccgggttttg atattgcaga ttttaaaatg tattctgata aaatcattca
    19981 taagccctat atgctggatg tagactattt aatattcggt tacgatatgg acgacaacgg
    20041 caatgtaacc atcaaggatt tatggcttaa aaaagtatgg caaattacga gaagcatgga
    20101 tgggtgggca attaatcttc aagtcaaaaa aggcgtggtg cataaaatcc gcccgggtgt
    20161 ttggtacagc ataaataaaa agaatatgcc tatgtttgaa tgcttggaag attttgtttc
    20221 cgcaattgaa gaaaccgttt atcaaaaccc ggcaacacgg cataacgcat ccttatggaa
    20281 aaagaaattt gaggaagcct ataaaaaaca ctacaaccga tcgatttcca tacctcgttg
    20341 gcacgaaatt gcacacaaat acaaaaagaa ataacccttc aaccatcaac ccataaggaa
    20401 acttgaaatg accaaacata tcgccatcct ccgaggtgac ggcatcggtc ccgaaatcgt
    20461 cgccgaaacc gtccgcgtac tcgacaaact tatcgaacaa ggtttggatg tcagctacga
    20521 atacgcacct ttgggcggcg aagcctatga cgaatacggc catccttatc cagaattcac
    20581 gcaaaacctt tgccgtaaag ccgatgcggt cctgcttggt gcagtcggtt ctcctcaata
    20641 cgacaatctc aaccgtccgc tgcgccctga acgcggctta ttggccatcc gtaaagactt
    20701 gaatcttttt gccaatttgc gccctgccat tttgtataaa gagctggcca atgcttctac
    20761 tttgaaacca gaaatcgtag ccggcctcga catccttatc gtacgcgaac tgaccggcga
    20821 tatttacttt ggcgaaccgc gcggcatccg tgttttggaa aacggcgaac gcgaaggcta
    20881 caacaccatg aaatacagtg aaagcgaaat ccgccgtatt gcccacgttg ccttccaatc
    20941 cgcccaaaaa cgcagcaaaa aagtctgctc cgtaggcaaa gccaacgttt tggaaaccac
    21001 cgaactttgg cgcgaaatct ttgaagaaat cggcaaacaa taccctgatg tcgagctttc
    21061 ccatatgtac gttgataacg cagccatgca gctcgtgcgc gcgcccaaac agtttgacgt
    21121 gattgccacc ggcaacatct tcggcgacat cctctccgac gaagcctcca tgctgaccgg
    21181 ctccatcggt atgctgcctt ccgcttcttt ggacgaaaac ggcaaaggcc tgtacgaacc
    21241 gtctcacggc tccgctcccg acatcgccgg agaaaacaaa gccaacccgc tggccaccat
    21301 cctctcgctt gccatgctgc tgcgttacag cctgaacgac gaagcgcgcg cgcaacaagt
    21361 tgaaaacgcc gtacaaaaag tgctgcaaca aggcttgcgt accaacgaca tttacgaaga
    21421 aggcacgaaa ctcgtttcct gttccgaaat gggcgacgcg gtactcgccg ccttgtaaaa
    21481 aacaaagcgc ggataacacc gcgctttttc atccgccctt ttctgcccgc cccgttcgtc
    21541 aaccgcctgc aaacccaccg tttaccggca ggaaatgcca taaccccccg cctatgttag
    21601 gataaacgcc tttaccggcc cacacaaagg attatcatca tgaaaaaaat catcatcgcc
    21661 gcgctcgcag cagccgccat cggcactgcc tccgccgcca cctacaaagt ggacgaatat
    21721 cacgccaacg cccgtttctc tatcgaccat ttcaacacca gcaccaacgt cggcggtttt
    21781 tacggtctga ccggttccgt tgagttcgac caagcaaaac gcgacggtaa aatcgacatc
    21841 accatccccg ttgccaacct gcaaagcggt tcgcaacact ttaccgacca cctgaaatca
    21901 gccgacatct tcgatgccgc ccaatatccg gacatccgct tcgtttccac caaattcaac
    21961 ttcaacggca aaaaactggt ttccgttgac ggcaacctga ccatgcacgg caaaaccgcc
    22021 cccgtcaaac tcaaagccga aaaattcaac tgctaccaaa gcccgatggc gaaaaccgaa
    22081 gtttgtggcg gcgacttcag caccagcatc gaccgcacca aatggggcgt ggactacctc
    22141 gttaacgttg gtatgaccaa aagcgtccgc atcgacatcc aaatcgaggc agccaaacaa
    22201 taaatcttga tgcgaatcag cacaaatgcc gtctgaacgt ccttcaaacg gcatttgtgc
    22261 cgtcttcatc aaaccgcccc gccaaccgta agccgatatg gcggagtaca acccgccgaa
    22321 agatatttca gcggcaggca gggcttgccg gaaagtccgg aaagtatag
//
LOCUS       DAXHPV010000017        22263 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.017, whole genome shotgun sequence.
ACCESSION   DAXHPV010000017 DAXHPV010000000
VERSION     DAXHPV010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 22263)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22263)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22263
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.017"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            3..602
                     /locus_tag="ACFM6C_000457"
     CDS             3..602
                     /locus_tag="ACFM6C_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HFC6157958.1"
                     /translation="MGISEVSNFEGRMRHLENNGYANVAGLERILAVKTDNYKEKENL
                     LHEIFSKSRIGDTELFAVDENLVKRLFLSLRGEIVFPKNETAESEFEKSVHERRQEGN
                     AGSGRKQLLDLVRRGHREYPYALPRLLAGAASYKPKKSKIRLFKEAYFGKSGTRLTDE
                     IADGIHIYTCFSRADLEKAYSEYLELFKSESDAEGRKPQ"
     gene            639..1400
                     /locus_tag="ACFM6C_000458"
     CDS             639..1400
                     /locus_tag="ACFM6C_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2314 domain-containing protein"
                     /protein_id="HFC6157959.1"
                     /translation="MMGDSVIYYVEQADKPVNRAGERARKTFKYFWRELFWERRRIIP
                     ALDFAMVKAPFFQDGEDGEICEHMWIDDIYFDGLYIYGVLNNEPGELTNVEQGESVCV
                     PVDDISDWMFVCNGIPYGGFTIQAMRGQMTEEERTEHDAAWGIDFGDPGQVLLVYEEK
                     EHPENLEEHPMCRNCIDDFRQQLSQNPDFLHEQDEDGYTPLHHEAIAGNALMVQAMLE
                     YGANPASKTSEGYTALDFARLAGWQNVADLLEPRH"
     gene            1455..1796
                     /gene="fdx"
                     /locus_tag="ACFM6C_000459"
     CDS             1455..1796
                     /gene="fdx"
                     /locus_tag="ACFM6C_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009425374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HFC6157960.1"
                     /translation="MPKITVLPHTTLCPEGAVIEDAPEGKTVLDVLLDHDIEVDHACE
                     KSCACTTCHVIIRKGFDSLEEPTELEEDLLDQAWGLEADSRLSCQAVVAGEDLIVEIP
                     KYTINHAREEH"
     gene            complement(2083..2670)
                     /locus_tag="ACFM6C_000460"
     CDS             complement(2083..2670)
                     /locus_tag="ACFM6C_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HFC6157961.1"
                     /translation="MNNMFAAKLSKLVYTASDHPDSLSEMEEFDRLILLIRKLYQILD
                     GQHILSRVTVCLHHQNRRGLIALDKAAAGCDAAMLRAQRWLIYTQIAERLAGSGGGFT
                     VTVESVSAACLELEGRYLELVRRAAVSFGFVQVQEYPAGGQEETQAVPDAASDHSVRK
                     PIKINIEAKVERYPAYRPTAALKVTRRRFFRLQNR"
     gene            2883..3080
                     /gene="iscX"
                     /locus_tag="ACFM6C_000461"
     CDS             2883..3080
                     /gene="iscX"
                     /locus_tag="ACFM6C_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HFC6157962.1"
                     /translation="MKWTDTRRIAEELYDLHGETIDPRTVRFTQLRDLIMALPEFDDD
                     PARCGERILEAVQQAWIDEAE"
     gene            complement(3148..3549)
                     /locus_tag="ACFM6C_000462"
     CDS             complement(3148..3549)
                     /locus_tag="ACFM6C_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HFC6157963.1"
                     /translation="MKDKHDSSAMRLDKWLWAARFFKTRSLAQKHIELGRVQVNGSKV
                     KNSKTIDIGDIIDLTLNSLPYKIKVKGLNHQRRPASEARLLYEEDAKTAALREERKQL
                     DQFSRITSAHPDGRPTKRDRRQLDRLKKGDW"
     gene            3760..4719
                     /locus_tag="ACFM6C_000463"
     CDS             3760..4719
                     /locus_tag="ACFM6C_000463"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HFC6157964.1"
                     /translation="MKPVFLDFEQPIAELTNKIDELRFVQDESAVDISDEIHRLQKKS
                     NDLTKSIFSKLTPAQISQVSRHPQRPYTLDYIEALFTDFEELHGDRHFADDYAIVGGL
                     ARFNGQSVMVVGHQKGRDTKEKIRRNFGMPRPEGYRKALRLMKTAEKFGLPVMTFIDT
                     PGAYPGIGAEERGQSEAIGKNLYELTRLHVPVLCTVIGEGGSGGALAVAVGDYVNMLQ
                     YSTYSVISPEGCASILWKTAEKAADAAQALGITADRLQKLDLVDTVIKEPLGGAHRDF
                     GQTMKNVKAVLEKQLHEAQSIPLADLLSRRFDRIMAYGKFSEQ"
     gene            4787..6097
                     /gene="tilS"
                     /locus_tag="ACFM6C_000464"
     CDS             4787..6097
                     /gene="tilS"
                     /locus_tag="ACFM6C_000464"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HFC6157965.1"
                     /translation="MLTLDAFEQCLKDCFPQGLNGKKTAVALSGGLDSVVLLHLLVRA
                     GKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVGLETVKICVEKNGLGIEAAAR
                     QKRYAAFAEKGFDVLALAHHRDDQIETFMLAVARGGGLRALAAMPAVRPFGEKGIIWR
                     PLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNRFRHRILPELSAQIPHFGRHLLN
                     NVRALQEDLALLDEVVVQDCRWVCGAGYFDTARWLTFSPRRKTHILRHFLKENGIPVP
                     NQNALADIARVLTEAKTGRWNVQGFELHHYAGRLFVFRPEKTDKLRFLKDRQISGNLR
                     EILAGQGFVLKRHPFGLPGHLLEQDGILRTVAASDRLAVGGIHKDVKKILQEKRVLPA
                     LRPFWPVVADKDNRPLALANYGTDFQISVSDGILPVHPDFPVLF"
     gene            6148..6933
                     /locus_tag="ACFM6C_000465"
     CDS             6148..6933
                     /locus_tag="ACFM6C_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrmH family RNA methyltransferase"
                     /protein_id="HFC6157966.1"
                     /translation="MKHISSANNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQ
                     SGGRPVGVYIPEAKMPSEEVRKLTAVLPEDGVFSVSDGILKKISSLTCADDVLALIDI
                     PDAGALPAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGM
                     GAHFLSEIYPQADLEIWLARYEDRVFATALREEKQAVLYNEDLREPTAWVFGNEGAGV
                     GKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAAY"
     gene            6943..7140
                     /locus_tag="ACFM6C_000466"
     CDS             6943..7140
                     /locus_tag="ACFM6C_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157967.1"
                     /translation="MPSEKIYYGVLIFLCIASMLLSPFFYAGALKPKKAALRKDGQWK
                     LILLSNTVAAAVLAWVWWKWF"
     gene            7402..7755
                     /locus_tag="ACFM6C_000467"
     CDS             7402..7755
                     /locus_tag="ACFM6C_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157968.1"
                     /translation="MKNCEFFYDPTRAIYDSGADYLTREKHRFVVIANSAWGLLLNLS
                     CYYDEVLEKRKIPFGKQEIDDDMDKVSAHKRKFKDISEIKVGDGWEYPFNYEQGMKEL
                     DEVLLKYIPFFEEER"
     gene            7767..8072
                     /locus_tag="ACFM6C_000468"
     CDS             7767..8072
                     /locus_tag="ACFM6C_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157969.1"
                     /translation="MRVSKIIGSMLLVTAVQTVFSANVYACRHNGKTSYSQTPGKHCT
                     NAGLGRDRVYSSVRPAVKDRAEDAGVGDYSDTVRDEHVQNPRENTHKDASNTGAKTH"
     gene            8134..9510
                     /gene="mpl"
                     /locus_tag="ACFM6C_000469"
     CDS             8134..9510
                     /gene="mpl"
                     /locus_tag="ACFM6C_000469"
                     /EC_number="6.3.2.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HFC6157970.1"
                     /translation="MKHIHIIGIGGTFMGGIAAIAKEAGFEVSGCDAKMYPPMSTQLE
                     ALGIGVHEGFDAAQLEEFKADVYVIGNVAKRGMDVVEAILNRGLPYISGPQWLAENVL
                     HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN
                     SQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHL
                     VRTVPSEGLIICNGQQQSLQDTLDKGCWTPVEKFGTEHGWQVGEVNADGSFDVLLDGK
                     TAGRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAFKNVKRRMEIKGTANGI
                     TVYDDFAHHPTAIETTIQGLRQRVGGARILAVLEPRSNTMKLGTMKAALPASLKEADQ
                     VFCYAGGADWDVAEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILVMSNGGFGGIH
                     TKLLDALR"
     gene            9717..10769
                     /gene="bioB"
                     /locus_tag="ACFM6C_000470"
     CDS             9717..10769
                     /gene="bioB"
                     /locus_tag="ACFM6C_000470"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004076 - biotin synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HFC6157971.1"
                     /translation="MTVSPVALRRKTECKPHPTARYWKKCDVEALFGLPFLDLIYQAA
                     EIHRQNFNPREIQLSTLLSIKTGGCPEDCAYCPQSAHHNTNLGKEQMMDVDEIVEKAK
                     IAKSRGASRFCMGAAWRGPKPKDVETVSAIIKAVKGLGMETCGTFGMLEEGMAEDLKE
                     AGLDYYNHNLDTDPDRYNDIIHTRRHEDRMDTLGKVRNAGLKVCCGGIVGMNETRAER
                     AGLIASLANLDPQPESVPINRLVKVEGTPLDDAEDLDWTEFVRTIAVARITMPQSYVR
                     LSAGRSNMPEAMQAMCFMAGANSIFYGDKLLTTGNPDEDGDRILMEKLNLYPLQFELE
                     GEVAEVEKASGIKVDY"
     gene            complement(10915..11481)
                     /locus_tag="ACFM6C_000471"
     CDS             complement(10915..11481)
                     /locus_tag="ACFM6C_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HFC6157972.1"
                     /translation="MNIKYSGIENRFETAILKKNGVRSGFVSFAPNLAAVKLNDYAKV
                     RKRITKTKQKADIVIVMFHGGAEGKQAEHLPFDTEIFYGENRGNVVEFARLAVDSGAD
                     VVFGQRPHVTRAVELYRDRFISYSGGNFATYGAINTSGISGIAPIFKIITDKQGKFIS
                     GTIIPITQADDKIPKINPEKPLSGGLFI"
     gene            11831..12064
                     /locus_tag="ACFM6C_000472"
     CDS             11831..12064
                     /locus_tag="ACFM6C_000472"
                     /inference="COORDINATES: protein motif:HMM:NF021127.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HFC6157973.1"
                     /translation="MQPPKICYAFRTPSAYGQYLADAGFDYLSFANNHSNDFGAQGIT
                     ATAASGSSFTYSIALKPLPITRPKLRKIPPSPR"
     gene            complement(12127..13986)
                     /gene="ilvD"
                     /locus_tag="ACFM6C_000473"
     CDS             complement(12127..13986)
                     /gene="ilvD"
                     /locus_tag="ACFM6C_000473"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004160 - dihydroxy-acid dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HFC6157974.1"
                     /translation="MPEYRSKTSTHGRNMAGARALWRATGVMETDFGKPIIAVANSFT
                     QFVPGHVHLHNMGQLVAGEIEKAGAIAKEFNTIAIDDGIAMGHSGMLYSLPSRDLIAD
                     SIEYMVNAHCADALVCISNCDKITPGMLIAAMRLNIPTIFVSGGPMEAGKVIGVANIQ
                     PERRLDLIDAMIESADDNVSNRQVEEVEQNACPTCGSCSGMFTANSMNCLTEALGLSL
                     PGNGSYLATHAGRKELFLEAGRMIVEITKRYYEQNDETVLPRSIATKKAFENAMTMDI
                     AMGGSTNTILHLLAVANEAGVDFKMADIDRLSRVVPCICKTAPNNHDYYMEDVHRAGG
                     IFAILKELDKAGKLHTDVHTIHAPTLKDAIEKWDITNPENTRAIERFKAAPGGVRTTQ
                     AFSQNRMWKTLDLDREKGCIRDVAHAYSQDGGLAVLFGNIAERGCVVKTAGVDESILK
                     FTGRARVFESQEDAVEGILGNQIVAGDIVIIRYEGPKGGPGMQEMLYPTSYLKSKGLG
                     KACALLTDGRFSGGTSGLSIGHASPEAAEGGAIGLVHEGDTVEIDIPNRSIHLAISDE
                     ELAARRAEMEARGSKAWKPKNRDRYVSAALRAYGAMATSADKGAVRDVAQIER"
     gene            complement(14159..15928)
                     /gene="cysI"
                     /locus_tag="ACFM6C_000474"
     CDS             complement(14159..15928)
                     /gene="cysI"
                     /locus_tag="ACFM6C_000474"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009337 - sulfite reductase complex
                     (NADPH) [Evidence IEA];
                     GO_function: GO:0004783 - sulfite reductase (NADPH)
                     activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0000103 - sulfate assimilation [Evidence
                     IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory sulfite reductase (NADPH)
                     hemoprotein subunit"
                     /protein_id="HFC6157975.1"
                     /translation="MTVQTKTKGLAWQEKPLSDNERLKTESNFLRGTILDDLKDPLTG
                     GFKGDNFQLIRFHGMYEQDDRDIRAERAEAKLEPLKFMLLRCRLPGGIIKPSQWIELD
                     KFARENSHYRSIRLTNRQTFQFHGVPKAKLQTMHRLLHKLGLDSIATAADMNRNVLCT
                     SNPIESELHRQAYEYAKKISEHLLPRTRGYLDVWVDGKKVQSSDDFLQEDEPILGKTY
                     LPRKFKTAVVIPPLNDVDCYGNDLDFVAISDGNGQLAGFNVLAGGGLSMEHGNTKTYP
                     NISLELGFVPPEHALKAAEAVVTTQRDFGNRSDRKNARTRYTIQNMGLDNFRAEVERR
                     MGMPFEPVRPFKFTGRGDRIGWVKGIDGNWHLTLFIESGRLVDEGGKQLLTGVLEIAK
                     IHKGDFRITANQNLIVANVPEGGKARIEQLARSYGLIHDGVSKLRENAMSCVSFPTCP
                     LAMAEAERVLPDFIGELDKIMAKHGTSDDYIVTRITGCPNGCGRAMLAEIGLVGKAVG
                     RYNLHIGGDREGVRIPRLYKENITLPEILAELDDLIGKWAAERNIGEGFGDFSIRTGI
                     VKPVLNAPVDFWDASKAVAIARA"
     gene            complement(15955..17769)
                     /locus_tag="ACFM6C_000475"
     CDS             complement(15955..17769)
                     /locus_tag="ACFM6C_000475"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009337 - sulfite reductase complex
                     (NADPH) [Evidence IEA];
                     GO_function: GO:0004783 - sulfite reductase (NADPH)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA];
                     GO_process: GO:0019344 - cysteine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory sulfite reductase (NADPH)
                     flavoprotein subunit"
                     /protein_id="HFC6157976.1"
                     /translation="MSEHDMQNTNPPLPPLPPEITQLLSVLDAAQWAWLSGYAWAKAG
                     NGASAGLPALQTALPAAEPFSVTVLSASQTGNAKSVADKAADSLEAAGIQVSRAELKD
                     YKAKNIAGERRLLLVTSTQGEGEPPEEAVVLHKLLNGKKAPKLDKLQFAVLGLGDSSY
                     PNFCQAGKDFDRRFEELGAKRLLERVDADLDFTASADGWTGRIVARLKEEAAKNRATP
                     APQTTPPAGLQTAPDGRYCKADPFPAALLANQKITARQSDKDVRHIEIDLSGSDLHYL
                     PGDALGVWFDNDPALVREILDLLGIDQATEIQAGGKTLPVASALLSHFELTQNTPAFV
                     KGYAPFADDDELDRIAADNAVLQGFVQSTPIADVLHRFPAKLTAEQFAGLLRPLAPRL
                     YSISSSQAEVGDEVHLTVGAVRFEHEGRARAGGASGFLADRLEEDGTVRVFVERNDGF
                     RLPEDSRKPIVMIGSGTGVAPFRAFVQQRAAENAEGKNWLFFGNPHFARDFLYQTEWQ
                     QFAKDGFLHRYDFAWSRDQEEKIYVQDKIREQAEGLWQWLQEGAHIYVCGDAAKMAKD
                     VEAALLDVIIGAGHLDEEGAEEYLDMLREEKRYQRDVY"
     gene            complement(17766..19052)
                     /locus_tag="ACFM6C_000476"
     CDS             complement(17766..19052)
                     /locus_tag="ACFM6C_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit 1"
                     /protein_id="HFC6157977.1"
                     /translation="MTAQHQAPLRFITAGSVDDGKSTLIGRLLYDSKALLSDQIKTLE
                     SGKSKGLKEAIDFSILTDGLEAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRN
                     MVTGASTASAAVVLVDASQLDFGAQPLQLLPQTKRHSAILRQLNCPHIVVAVNKMDLL
                     DYSEDKFNAIVEAYRRLAEQLGLKDAHFVPVSALLGDNIVYPGGNMPWYKGEPLLSIL
                     ETLPGADEVSRTADDFYFPVQLVVRQDADKADDFRGYQGRIERGSVAVGQTVRIEPNG
                     LTAEVSEIITPKGEVAQAFAGEAATLRLDRDIDVSRGDLFVDKNSPLAPQKHLEATLC
                     WFDERPLNTARKYLLKHGTQTVSAKVGEIESVLDVRTLEQEAGAESLKMNDIAKVRIN
                     LQKPVTATPYAENTAAGSFILIDEATYGTVAAGMIL"
     gene            complement(19091..20014)
                     /gene="cysD"
                     /locus_tag="ACFM6C_000477"
     CDS             complement(19091..20014)
                     /gene="cysD"
                     /locus_tag="ACFM6C_000477"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA];
                     GO_process: GO:0000103 - sulfate assimilation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HFC6157978.1"
                     /translation="MTKTEPNNVQLDWLESESIHIIREVAAECENPALLFSGGKDSVV
                     LLALACKAFRLGSRPVKLPFPLVHIDTGHNYPEVIAFRDAQAAKLNARLIVGRVEDSI
                     AKGTVVLRKETDSRNAAQAVTLLETIEANGFDALMGGARRDEEKARAKERIFSFRDEF
                     GQWDPKAQRPELWSLYNTRLHKGENMRVFPISNWTELDIWQYIARENLELPPIYYSHR
                     REVVRRRGLLVPVTPLTPKMPSETSEILDVRFRTVGDISCTCPVESTASTPTEIIRET
                     AVTDISERSATRLDDQASEAAMEKRKKEGYF"
     gene            complement(20052..20786)
                     /locus_tag="ACFM6C_000478"
     CDS             complement(20052..20786)
                     /locus_tag="ACFM6C_000478"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004604 - phosphoadenylyl-sulfate
                     reductase (thioredoxin) activity [Evidence IEA];
                     GO_process: GO:0019379 - sulfate assimilation,
                     phosphoadenylyl sulfate reduction by
                     phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenylyl-sulfate reductase"
                     /protein_id="HFC6157979.1"
                     /translation="MKIFKPALWKIPPIENGSETALAEKTETLKQRLHRIAGSHRDAR
                     FASSLAAEDMVITDLIAGENLNIGIFTLDTGLLHAETLNLLDRIERVYPHMQIKRFQP
                     IREDALHYVESKGRFAFYDSVEARRECCRIRKTEPLDRAIAGADAWLTGQRREQSATR
                     TELPFAEYDAGRGIDKYNPIFDWSEHDVWAYILANNVPYNDLYRQGFPSIGCDPCTRP
                     VKAGEDIRAGRWWWEDKNSKECGLHK"
     gene            complement(20802..22253)
                     /gene="cysG"
                     /locus_tag="ACFM6C_000479"
     CDS             complement(20802..22253)
                     /gene="cysG"
                     /locus_tag="ACFM6C_000479"
                     /EC_number="1.3.1.76"
                     /EC_number="2.1.1.107"
                     /EC_number="4.99.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004851 - uroporphyrin-III
                     C-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0043115 - precorrin-2 dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0051266 - sirohydrochlorin ferrochelatase
                     activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0019354 - siroheme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="siroheme synthase CysG"
                     /protein_id="HFC6157980.1"
                     /translation="MNYFPIFANLAGRPVLVVGGGAVAARKISLLLKAGAEVRVAAKH
                     LNTELSALAAENKILWLAEEFRAEHIRTVFLIIAASSDQALNRRVFHLAESCQKPVNV
                     VDDRDHCSFIFPSVIDRNPVQIAVSSSGSAPVLARLLREKLEALLPPSLGDMAEISGR
                     WRDAVKAKLKSVTERRRFWEKQFNGRFAALVKNQQTAQAEQELAKQLEQNYQGGFVSL
                     VGAGPGDAGLLTLKGLQEIQQADVVLYDALVSDGILSLVRRDAERIFVGKRARGGRTP
                     QEDTNALMVRLAREGRRVVRLKGGDPFVFGRGGEELETLARHQIPFSVVPGITAAVGA
                     TAYAGIPLTHRDYAQSAVFVTGHRKADAPDIEWQTLARSRQTLVIYMGALKAALIAER
                     LQQHGRSPDTPAAVISQGTLPAQKTATGTLANLAELAETAPNPALIVIGEVVGLHEKL
                     AWFGENAKKESNPAEHAYFALDGLGTGQEQQAA"
BASE COUNT         4827 a         5778 c         6398 g         5260 t
ORIGIN      
        1 aaatcggcat ttcggaggta agcaattttg aaggcagaat gcgccatttg gaaaacaacg
       61 gctatgcgaa cgttgccgga ttggaacgca tcctcgccgt caaaaccgac aattacaaag
      121 aaaaagaaaa cctgctccat gaaattttca gcaaaagcag gataggcgat accgaattgt
      181 tcgccgtgga cgaaaacctt gtaaaacgtt tgtttttatc gcttcgcggc gaaatcgtgt
      241 ttccgaaaaa cgaaacggcg gaatcggaat ttgaaaaaag cgtccacgaa cgcaggcagg
      301 aagggaatgc cgggtccggc cgcaaacaac tgcttgattt ggtacggcgc ggacaccggg
      361 aataccctta cgcgctgccc cggcttttgg cgggcgcggc atcctacaag ccgaaaaaat
      421 cgaaaatccg cctttttaaa gaagcatatt tcggcaaaag cggcacgagg ctgaccgacg
      481 aaattgcaga cggcatccat atttacacct gtttttcgcg ggcggatttg gaaaaagcct
      541 attccgaata tttggaactt ttcaaatccg aatcggatgc cgaaggcaga aagccgcagt
      601 aaggtgcaaa cagataccgt acacgttgag gagcagatat gatgggcgat tccgtcattt
      661 attatgtaga acaggcagac aaaccggtaa accgtgccgg cgaacgcgcc cgtaaaacat
      721 tcaaatattt ttggcgcgag cttttttggg aacgccgccg catcattccc gccttagatt
      781 ttgccatggt caaagcccct tttttccaag acggcgaaga cggcgaaatt tgcgaacata
      841 tgtggatcga cgatatttat tttgacggtc tttacattta tggcgtgctg aacaatgaac
      901 ccggcgaact gaccaatgtc gaacaaggcg aaagcgtttg cgttccggtt gacgacatca
      961 gcgactggat gttcgtgtgc aacggcattc cctacggcgg ctttaccata caggcaatgc
     1021 gtggacagat gacggaagag gagcgtaccg aacacgatgc cgcatgggga atcgatttcg
     1081 gcgatcccgg gcaggtattg ctggtgtatg aagaaaaaga acatcccgaa aatctggaag
     1141 agcatccgat gtgccggaac tgtattgacg attttcggca acagttgtcc caaaatccgg
     1201 attttctgca tgagcaggac gaagacggct atacgccgct tcatcatgaa gccatcgcag
     1261 gaaatgcact tatggttcaa gccatgcttg aatacggcgc aaatcctgcc tcaaagacat
     1321 cggaaggcta taccgccctc gattttgccc gcctggcggg ctggcaaaat gttgccgacc
     1381 tgctcgaacc gcgacattag gcggacagtt ttccgaaaac gaacacaaac actttttaca
     1441 gaaagacaat aaaaatgccc aaaatcaccg tacttccaca cacgacatta tgccccgaag
     1501 gcgcggttat cgaagacgcg cccgaaggca aaaccgtcct tgacgtgctg ctcgaccatg
     1561 atatcgaagt cgatcacgcc tgcgaaaaat cctgcgcctg cacaacctgc cacgtgatta
     1621 tccgcaaagg tttcgacagc ctggaagagc cgaccgaatt ggaagaagac ctgctcgatc
     1681 aggcttgggg tttggaagcc gattcgcgcc tgagttgtca ggcggttgtc gccggcgagg
     1741 atttgattgt ggaaatcccc aaatacacca tcaaccacgc gcgagaagaa cactgaaaac
     1801 aggccgtctg aagccggcac gcttcagacg gcattgttgc gcggataagg cgcaatcgcc
     1861 cgaaaacagg cgttcgtaca ggcggaactt tcgattctat agtgaattaa caaaaatcag
     1921 gacaaggcgg cgagccgcag acagtaccaa tagtacggca aggcgaggca acgctgtacc
     1981 ggtttaaatt taattcacta tatattgatt tttatcggtt ttctgacgga acggattggt
     2041 gcggcatccg aggcggatta ctcgggcgcg atgcacgggt atttatcggt tttgcagccg
     2101 gaaaaaccgc cggcgggtta ctttcagggc ggcggtcggg cggtatgccg gatagcgttc
     2161 cactttcgct tctatattga ttttgattgg ttttctgacg gaatgatccg atgcggcatc
     2221 cgggacggct tgtgtttctt cctgcccgcc tgccggatat tcctgtactt gcacgaaacc
     2281 gaaagagacg gcggcgcggc ggacaagctc gagatagcgt ccttcaagct ccaggcaggc
     2341 ggcggacacg ctttctaccg taaccgtgaa accgccgccc gacccggcaa ggcgttccgc
     2401 aatctgcgtg tagatgagcc aacgttgggc gcgcaacatt gccgcatcgc aaccggcagc
     2461 cgctttatcc aaggcaatca ggccgcgccg gttttggtgg tgaaggcaaa ccgttactct
     2521 ggagaggata tgttgcccgt ccaatatttg atacagtttg cgtatcagca gaatcaggcg
     2581 gtcaaactcc tccatctccg acagggaatc aggatggtcg gaagcggtat aaaccagttt
     2641 ggacaatttt gcggcaaaca tattgttcat caatcttcct tgtcggttga aaccccgctc
     2701 ttcggggcgg tagaatcaga tttgtttggg agggacaact cctcccagat caggacgaca
     2761 cataggctgg tgcttgatgt gttgtccggc gagttgaaac attcagccat cctcaaggtg
     2821 cggcagtttt gccgaaacat attctacacg gcttcaatgc cggacgataa aaggaaattc
     2881 atatgaaatg gaccgacacc cggcgtatcg ccgaagaact ctatgacctg cacggcgaaa
     2941 ccatcgatcc cagaaccgtg cgctttaccc aactgcgcga cctgattatg gcattgcccg
     3001 aatttgatga cgatcccgcc cgttgcggcg aacgtattct cgaagccgtg cagcaggcat
     3061 ggatagacga ggcagaataa gtttcgggaa tgccgtctga aatacggcgg tacgcggttc
     3121 gtgcttctgt ttgcagtggg aacggtttta ccagtctcct tttttcagcc tatccagttg
     3181 gcggcggtcg cgcttggtcg gtctgccgtc gggatgggcg gaagtgatgc ggctgaattg
     3241 gtcgagctgt ttgcgctctt ccctcaatgc tgccgttttt gcgtcttctt catacagaag
     3301 ccgcgcctcg gatgccgggc ggcgttggtg gttcaaacct ttaaccttga ttttataggg
     3361 aagggaattg agcgtcaggt cgataatatc gccgatgtct atggttttac tgtttttgac
     3421 cttcgagccg tttacttgaa ccctacccag ttcgatgtgc ttttgcgcaa gggaacgggt
     3481 cttgaaaaaa cgtgccgccc aaagccattt gtccagccgc atggcggaag aatcgtgctt
     3541 gtctttcata cgattttgtt tgaaataatt gaatttgttt cgagtttagc ataagatacg
     3601 ccgcctataa ctagtatata tgcactaatc cactgttttc catgctgtcc gaacacaaaa
     3661 agagggtgtg gaaaagccgt tttggacaat aaattaactg cggaatatgc acaaatagcg
     3721 tatgatagcg gcagaatctg ttgatgagag cttcattcta tgaaacctgt ttttttggat
     3781 tttgaacaac ccatagccga actgaccaac aaaatcgatg agctgcgttt cgtccaagac
     3841 gagtctgccg tcgatatttc ggacgaaata caccgtttgc agaaaaaaag caacgacctg
     3901 accaaatcga ttttcagcaa actcacaccc gcccaaattt cacaggtttc ccggcatccg
     3961 cagcgtccct atactttgga ttacattgag gcactgttta ccgattttga agaactgcac
     4021 ggcgaccgcc actttgccga cgattatgcg attgtcggcg gattggcgcg tttcaacgga
     4081 caaagcgtga tggtcgtcgg gcatcagaaa gggcgcgaca ccaaagaaaa aatccgccgc
     4141 aacttcggta tgccccgtcc tgaaggctac cgcaaagccc tgcgcctgat gaagacggca
     4201 gaaaaattcg gcttgcccgt catgaccttt atcgatacgc cgggcgcgta tcccggcatc
     4261 ggcgcggaag aacgcggaca gtcggaagcc atcggcaaaa acctgtacga actgacgcgc
     4321 ctgcacgtcc ccgttttgtg taccgtcatc ggcgaagggg gctcgggcgg tgcgttggcg
     4381 gtcgccgtag gcgattacgt caatatgctg caatattcga cctattctgt tatctccccc
     4441 gaaggctgcg cttcgatttt gtggaaaacc gccgaaaagg cggcggatgc ggctcaggct
     4501 ttgggcatta ctgctgaccg cctgcaaaag ctggacttgg tcgataccgt catcaaagaa
     4561 ccattgggcg gcgcgcatcg ggatttcggg caaaccatga aaaacgtaaa agccgttttg
     4621 gaaaaacaac tgcacgaagc gcaaagcatc ccgcttgccg atttgctttc gcgccgtttc
     4681 gaccgcatta tggcttacgg caaattttcg gaacaataat tcaggtagaa caagcagcaa
     4741 gcagtttgtc tgaaactgct tgctttttct ttatcgggac ggaaccgtgc tgactttaga
     4801 tgcgtttgag caatgcttga aggattgttt tcctcaaggt ctgaatggaa aaaaaacagc
     4861 ggtggcatta agcggcggct tggattccgt cgttttgctg catctgcttg tccgcgccgg
     4921 gaaaaaaggc ggttttattc cggatgcatt gcatatccat cacggcttga gtccccgtgc
     4981 cgacgattgg gcggatttct gccaaaacta ttgcgatatg ctcggggtgg ggctggaaac
     5041 ggttaagatc tgcgtggaaa aaaacggttt gggcatcgag gcggcggcgc ggcaaaagcg
     5101 ttatgccgcg tttgccgaaa aaggctttga cgttttggcg ttggcgcacc acagggacga
     5161 tcaaatcgaa acctttatgc tggcggtcgc gcgcggcggc ggtttgcgcg ctttggcggc
     5221 tatgcccgcc gtccgccctt ttggggaaaa aggcatcatt tggcggccct tgctgccttt
     5281 ttcgcgccaa gatatatggg attatgccca aaaacacggt ttgccgaata tcgaggacga
     5341 aagcaatagc gatacggctt atttgcgaaa ccgcttccgg caccgtattt tgcccgaact
     5401 ttcggcgcag attccccatt tcgggcggca tctgttgaac aatgtccgtg ccttgcagga
     5461 ggatttggct ttgttggacg aggtcgtcgt tcaagactgc cgttgggttt gcggagccgg
     5521 ttatttcgat acggcgcggt ggctgacgtt ttccccgcgc cggaaaaccc atattttgcg
     5581 gcattttttg aaggaaaacg gcattcccgt gccgaatcag aatgcccttg ccgacattgc
     5641 ccgggttttg acggaggcaa aaaccggacg ttggaacgtg caaggctttg aattgcatca
     5701 ttatgcaggc aggctgtttg tgttccgacc ggaaaaaacg gataaactgc ggtttttgaa
     5761 agacaggcag ataagcggaa atttaaggga aatattggcg gggcagggat ttgttttaaa
     5821 acgtcatccg ttcggacttc ccgggcatct tttggagcag gacggaatct tgcggacggt
     5881 tgcggcatcg gacaggctgg ctgtcggcgg tatccataag gatgtgaaga aaatccttca
     5941 ggaaaagcgg gttttgcccg cgctgcgccc gttttggccg gtcgtcgccg acaaggacaa
     6001 ccgtccgctg gcgttggcaa attacggtac ggattttcaa atctcggttt cagacggcat
     6061 tttgcccgtc catccggatt ttcccgtttt attttgatgg aatcggaatc gccgttacct
     6121 attatatatt cttgaaaagg cggtaaagtg aagcatatca gttcggcaaa caatgaacac
     6181 atcagacacc tgcaccgcct gttgtctcaa gggaagttca gacggcaata cgcccaaacc
     6241 gttttggagg gcgtgcacct gcttcaggtt ttcctgcaat ccggcggaag gccagtcggg
     6301 gtatatattc ccgaagcgaa aatgccgtct gaagaagtcc gtaaattgac ggcggttttg
     6361 ccggaagacg gggttttttc cgtttcagac ggcatattga agaaaatcag cagcctgact
     6421 tgcgcggatg atgtgcttgc gctgattgat attccggatg cgggtgcttt gccggccggc
     6481 ggcgactgtg tggttttgga cggcgtgcaa gatccgggca atgtcggcac ggtgttgcgg
     6541 agcgcggcgg cggcaggaat cggcgcggtc gttttgggca aaggttgtgc ggacgcgtgg
     6601 tcgcccaaag tgctgcgagc cggaatgggc gcgcatttct tgtcggagat ttatccgcag
     6661 gcggatttgg aaatatggtt ggcgcgttat gaagaccgtg tgtttgccac cgcgttgcgt
     6721 gaggaaaaac aggcggttct gtataacgaa gatttgcgcg aaccgacagc ctgggtgttt
     6781 ggcaacgaag gcgcgggggt cggtaaagca gttttagaca gggcggacaa gtgtgtcagg
     6841 ataccgatgc acgatgcaac cgagtcttta aatgtcgcga tggcggcgac aatctgcctg
     6901 tttgaacaaa tgcgccaacg ggcggcgtat tgaggaaaag aaatgccgtc tgaaaaaatc
     6961 tattacggcg tattgatttt cttatgtatc gcttctatgc tgctgtcgcc gtttttttat
     7021 gcgggtgctt tgaagcccaa gaaggcggca ttgcggaagg acgggcagtg gaaactcatc
     7081 ttattgtcca ataccgtggc ggcggcggtt ttggcttggg tgtggtggaa atggttttga
     7141 cagatattgc tcaaaatcgt gctaatggaa tccgaacaaa taaagaattt ggtaaaaaat
     7201 ttgttaaatc aacgaattaa agttttgtgg aaaacaaaac agctctaagc aaatagggcg
     7261 tttgtcggta aatacggaag agttgcggca ttatcgggca tctttaacaa gtagtgccgt
     7321 cttgacaggc aatcggtttt tatgggcagc ttgcaaaatc gcggatataa aattgcaaat
     7381 cggttaaagt gtggggacgc tatgaaaaat tgcgaatttt tttatgaccc gacaagggca
     7441 atctatgata gcggtgcaga ttatttaacc agagaaaaac atagattcgt cgtaattgca
     7501 aatagtgctt gggggctatt gcttaattta tcttgttatt atgacgaggt tttggaaaag
     7561 cggaaaatac cgttcggcaa acaggaaatt gatgacgata tggacaaagt gtccgcccat
     7621 aagcggaagt ttaaagatat ttctgaaatc aaagtagggg atggttggga atacccgttc
     7681 aattatgagc agggaatgaa agaattagat gaagtgctat tgaaatacat tccctttttt
     7741 gaagaagaac gataaaggag attgatatgc gcgtatctaa aataattgga agtatgttgc
     7801 ttgttacagc ggttcagacc gtattttcgg caaatgttta cgcgtgccgc cataatggta
     7861 aaaccagtta cagccaaact ccgggaaaac attgtaccaa cgcgggtttg gggcgggatc
     7921 gggtgtacag ttcggttaga ccggcagtaa aagacagggc ggaagacgca ggggtcggcg
     7981 attattcgga cacggtgagg gacgaacacg tccaaaatcc gagagagaat acgcataagg
     8041 atgcttcgaa taccggtgca aagacgcatt gattgaaacc gaatcagcca tgacggcgtt
     8101 gaataataga atttgaacga ttagggaact ctgatgaaac acatccacat tatcggtatc
     8161 ggcggcacgt ttatgggtgg gattgccgcc attgccaaag aagcagggtt tgaagtcagc
     8221 ggttgcgatg cgaagatgta tccgccgatg agcacccagc tcgaagcctt gggcataggc
     8281 gtacacgaag gcttcgacgc ggcgcagttg gaggaattta aagccgacgt ttacgtcatc
     8341 ggtaatgtcg ccaagcgcgg gatggatgtg gttgaggcga ttttgaaccg cgggctgcct
     8401 tatatttccg gtccgcaatg gctggctgaa aacgtgctgc accatcattg ggtactcggt
     8461 gtggcgggga cgcacggtaa aacgaccacc gcgtccatgc tcgcatgggt tttggaatat
     8521 gccggactcg cgccgggctt cctcatcggc ggcgtaccgg aaaacttcag cgtttccgcc
     8581 cgcctgccgc aaacgccgcg ccaagacccg aacagccaat ctccgttttt cgttatcgaa
     8641 gccgacgaat atgacaccgc gtttttcgac aaacgctcca aattcgtgca ttaccgtccg
     8701 cgtaccgccg tgttgaacaa tctagaattc gaccacgccg acatctttgc cgatttgggc
     8761 gcgatacaga cccagttcca ccacctcgtg cgcaccgtgc cgtctgaagg cttaatcatc
     8821 tgtaacggac agcagcaaag cttgcaggat actttggaca aaggctgctg gacgccggtg
     8881 gaaaaattcg gcaccgaaca cggctggcag gtcggcgaag tcaatgccga cggctcgttc
     8941 gacgtgttgc ttgacggcaa aacggccgga cgcgtcaaat gggatttgat gggcaggcac
     9001 aaccgcatga acgcgctcgc cgtcattgcc gccgcgcgtc atgtcggtgt cgatattcag
     9061 accgcctgcg aagccttggg cgcgtttaaa aacgtcaaac gccgcatgga aatcaaaggc
     9121 acggcaaacg gtatcaccgt ttacgacgac ttcgcccacc atccgaccgc tatcgaaacc
     9181 acgattcaag gtttgcgcca gcgcgtcggc ggcgcgcgca tcctcgccgt cctcgaaccg
     9241 cgttccaata cgatgaagct gggtacgatg aaagccgccc tgcccgcaag cctcaaagaa
     9301 gccgaccaag tgttctgcta cgccggcggc gcggactggg acgttgccga agccctcgcg
     9361 cctttgggcg gcaggctgca cgtcggcaaa gacttcgatg ccttcgttgc cgaaatcgtg
     9421 aaaaacgccg aagcaggcga ccatattttg gtgatgagca acggcggttt cggcggaata
     9481 cacaccaaac tgctggacgc tttgagatag cccgggcgat gccgtctgaa agtccttcag
     9541 acggcatcgc ccggctgcgc ggcacaaagg cggaaaaacc gtttgccccg tattttcaaa
     9601 cgcgttacac ttgccgccgc tgttttcagc catttgatta cccgcaaccg ccgtcattgc
     9661 gccggcggtc tgcacgtcag cgtcattgcg ccgctgtaaa tacgaaagaa cacattatga
     9721 ccgtatcccc cgtcgccttg cgccgcaaga ccgagtgcaa gccgcatccc accgcgcgct
     9781 attggaaaaa atgcgatgtc gaagccctgt tcggacttcc cttcctcgac ctcatttacc
     9841 aagccgccga aatccaccgc caaaatttca acccgcgcga aatccagctt tccacgctgt
     9901 tgtccatcaa aaccggcggt tgtcccgaag attgcgccta ctgtccgcaa tcggcgcacc
     9961 acaacaccaa tctgggcaaa gagcagatga tggatgtgga tgaaatcgtc gaaaaagcca
    10021 aaatcgccaa atcgcgcggc gcaagccggt tttgtatggg cgcggcatgg cgcggcccca
    10081 aacccaaaga cgtggagacg gtttccgcaa tcatcaaagc cgtcaagggc ttgggtatgg
    10141 aaacctgcgg cacgttcggt atgctcgaag aaggtatggc ggaagacttg aaagaggcgg
    10201 gcttggatta ttacaaccac aacctcgaca ccgaccccga ccgctacaac gacatcatcc
    10261 atacacgccg gcatgaagac cgtatggaca ccttgggcaa agtccgcaac gccggtttga
    10321 aagtctgctg cggcggcatc gtcgggatga acgaaactcg tgccgaacgc gccgggctga
    10381 ttgccagcct cgccaacctc gacccgcagc ccgaaagcgt gccgattaac cggttggtca
    10441 aagtggaagg cacgccgctt gacgatgccg aagatttgga ctggacggaa tttgttcgca
    10501 ccatcgccgt ggcgcggatt acgatgccgc aaagttatgt ccggctgtcg gcagggcgca
    10561 gcaatatgcc ggaagcgatg caggcgatgt gctttatggc gggcgcgaat tcgatttttt
    10621 acggcgacaa gctgttgacc acaggcaatc cggacgaaga cggcgacaga atcctgatgg
    10681 aaaagcttaa cctgtatccc ttacagtttg agctggaagg cgaggtcgcc gaagtggaaa
    10741 aagcctcggg gattaaagtg gattattgac gattgaaaaa tgccgtctga aacccggaaa
    10801 aaggctttca gacggcattt gtccggacgg catttccaat atctttttac cggcgcgtga
    10861 tgctgccgtc gggcgagaca tccagtccgt tcccgttggg gaagtcgctg ctgttcagat
    10921 aaataatccg cccgataacg gtttttcagg gttgattttg gggattttat cgtcggcttg
    10981 ggtaatcggg atgatggttc cggaaataaa tttaccctgt ttgtcggtga taattttaaa
    11041 aatgggggcg atgccgctga tgccggaggt gttgattgcg ccgtaggtgg caaagttgcc
    11101 gccgctgtag gagatgaagc ggtcgcggta aagttcgacg gcgcgagtaa cgtgcggcct
    11161 ctgcccgaat acgacatccg cgccggaatc gacggcaagc cgcgcaaact caacgacgtt
    11221 gcccctgttt tccccataga agatttcggt atcgaacggc aggtgttccg cctgtttccc
    11281 ttccgcgccg ccgtggaaca tcacaatgac gatgtcggct ttctgtttgg ttttggtaat
    11341 ccgttttcta actttggcat aatcgttcag tttgacggcg gcaaggttgg gggcgaagga
    11401 gacgaagccg gatcttacgc cgtttttctt caggatggcg gtttcaaacc tgttttcgat
    11461 gcccgaatat ttgatgttca attcgtcaag gttcgccctt tatgccgttt ccgcaccgca
    11521 aaccgccggg gtcaatccct cggcgcatcc tgccggaacg gaatccccgt gctgccgatt
    11581 gacggttcaa accccgcgcc cgtttcaaat accagcgatg tggacggaca ggatgcgcct
    11641 gacgaaaaga cagccgatac cgtttccatt atcggcgtgg gcgacattat gctcggcagc
    11701 aattatccgg tcgattacct gcccgatacc aatattctga aaaacgtcga atctgccttg
    11761 caagacgcgg acattaccgt cggcaacctc gaaggcacgc tgtttgacga aggcggtacg
    11821 ccgaaaaaat gtgcaacccc ccaaaatatg ctatgcattc cgaacgccct ccgcatacgg
    11881 gcaatacctt gccgacgcgg gattcgacta cctcagcttc gccaacaacc acagcaacga
    11941 cttcggcgcg caaggcatca cggcaacggc ggcgagcggc agctctttta catactcgat
    12001 cgcgctaaag ccgctgccga taacgaggcc aaaattgcgg aaaataccgc catcgcccag
    12061 ataaatttgt ccatcatcag acctttactg ttcagacgag acagcatttg ccgcacgttt
    12121 tggggcttat ctttcgattt gcgctacgtc gcgcaccgcg cctttgtcgg cggaagtcgc
    12181 catcgcgccg taagctctta atgcggcgga gacgtagcgg tcgcggtttt taggcttcca
    12241 tgctttgctg ccgcgcgctt ccatttcggc acggcgtgcg gcaagctctt catcggaaat
    12301 ggcaaggtgg atgctgcggt tggggatgtc gatttcgacg gtatcgcctt cgtgtaccaa
    12361 accgatcgcg ccaccttccg ccgcttcggg cgaggcgtgt ccgatggaca aacctgatgt
    12421 gccgccggag aagcgtccgt cggttaagag agcgcaggct ttgccgaggc ctttagattt
    12481 caggtaggaa gtcggataca gcatttcctg catgcccggg ccgcctttcg ggccttcgta
    12541 gcggatgatg acgatgtcgc cagcgacgat ttggttgccc aaaatgcctt ctactgcgtc
    12601 ttcttggctt tcaaacacgc gggcgcggcc ggtgaatttg aggatgctct cgtccacgcc
    12661 tgcggttttt accacgcagc cgcgctcggc gatgttgccg aacaagaccg ccaaaccgcc
    12721 gtcttgcgag taggcgtgtg ccacgtcgcg gatacagcct ttttcgcggt cgaggtcgag
    12781 ggttttccac atacggtttt gcgagaacgc ttgggtggtg cgtacgccgc cgggcgcggc
    12841 tttgaagcgt tcgatggcgc gggtgttttc agggttggtt atgtcccatt tttcaatcgc
    12901 gtctttcagc gtcggtgcgt ggatagtgtg cacgtcggtg tgcagcttgc ccgctttgtc
    12961 caattctttc aggatggcga aaatgccgcc ggcgcggtgc acgtcttcca tatagtagtc
    13021 gtggttgttg ggtgcggttt tgcagatgca gggcacaacg cggcttaagc ggtcaatgtc
    13081 ggccattttg aaatcgacac cggcttcgtt ggcaacggcc aacaggtgca aaatggtatt
    13141 ggtgctgccg cccatcgcaa tatccatcgt catggcgttt tcaaacgctt ttttggtggc
    13201 aatgctgcgc ggcagcacgg tttcgtcgtt ttgttcgtaa tagcgtttgg tgatttcgac
    13261 aatcatacgg ccggcttcga ggaacagttc tttgcggccg gcgtgggtgg cgaggtaaga
    13321 accgttgccc ggcagggaca gcccgagtgc ttcggtcagg cagttcatcg agtttgccgt
    13381 aaacataccc gaacacgagc cgcaggtcgg gcaggcgttt tgttcgactt cttcgacttg
    13441 ccggttgctg acattgtcgt ctgccgattc gatcatcgcg tcaatcaagt ccaagcggcg
    13501 ttctggttgg atgtttgcca cgccgataac tttacctgct tccatcgggc cgccggagac
    13561 gaagatggtg gggatgttca ggcgcatcgc ggcaatcagc atgcccgggg tgattttgtc
    13621 gcagttggaa atgcacacca gcgcgtcggc gcagtgggca ttgaccatat attcgatgga
    13681 gtcggcaatc aaatcgcggc tgggcaggga atacagcata ccgctgtgtc ccatagcgat
    13741 gccgtcgtcg atggcgatgg tgttgaattc tttggcgatg gcgccggctt tttcgatttc
    13801 tccggcaacc agctggccca tattgtgcag gtggacatga cctggcacga attgggtgaa
    13861 cgagttggca acggcgataa tcggtttgcc gaagtcggtt tccatcacgc cggtggcgcg
    13921 ccacaacgcg cgcgcgcccg ccatattgcg accgtgggtg gaggttttgg agcggtattc
    13981 tggcatagtg tgtttccttg tgcctatacc gtctgaaaga cagggctgtt tcagacggta
    14041 tcgggtacgg ttttttagag tgggaaaaga gggtatttta taccaagtat cggaattttg
    14101 cgggattgaa acggcgtgcg gcaaaaaaga aaatccccgc aggaatgcgg ggacgggttc
    14161 aggcgcgggc aatcgcgacg gctttggatg cgtcccaaaa atcaacgggt gcatttaata
    14221 cgggtttgac gatgcccgtc cgtatggaga aatcgccgaa accttcgccg atattgcgtt
    14281 ctgccgccca tttgccgatc aggtcgtcca attcggcaag gatttcgggc agggtgatgt
    14341 tttctttgta aagacggggg atgcgtacgc cttcacggtc gccgccgata tggaggttgt
    14401 agcgtccgac ggctttgccg accagtccga tttccgccaa catcgcccgt ccgcagccgt
    14461 tcgggcagcc ggtaatgcgg gtaacgatgt agtcgtccga cgtgccgtgt ttcgccataa
    14521 tcttatccag ctcgccgatg aagtccggca gcacgcgttc ggcttccgcc attgccagcg
    14581 ggcaggtcgg gaaggaaacg cacgacatcg cattttcgcg cagtttgctg acaccgtcgt
    14641 gtatcagccc gtatgagcgg gcgagctgtt cgatccgggc tttgcctcct tcgggtacat
    14701 ttgccacgat gaggttttgg ttggcggtga tgcggaagtc gcctttgtgg attttggcga
    14761 tttccaacac gccggtcaga agctgtttcc cgccttcgtc aaccaaacgc ccgctttcga
    14821 tgaaaagggt caaatgccag ttgccgtcta tgcctttcac ccagccgata cggtcgccgc
    14881 gcccggtaaa tttgaacggg cgtacgggtt cgaacggcat acccatacgg cgttcgactt
    14941 cggcgcggaa gttgtccaag cccatatttt gaatggtgta gcgggtgcgg gcgtttttgc
    15001 ggtcgctgcg gttgccgaag tcgcgctgcg tggttaccac cgcttcggcg gccttcagcg
    15061 cgtgttccgg aggcacgaaa cccagttcca gtgaaatgtt cggataggtt ttggtgttgc
    15121 cgtgttccat cgaaagcccg ccgcccgcca aaacattgaa tccggcaagc tgtccgttgc
    15181 cgtctgaaat ggcgacaaaa tccaagtcgt tgccgtagca gtccacatca tttaagggcg
    15241 ggatgacgac tgcggttttg aatttgcgcg gcagataggt tttgcccaaa atcggctcgt
    15301 cttcttgaag gaagtcgtca gaactttgaa cttttttgcc gtccacccac acatccagat
    15361 aaccgcgcgt gcgcggcagc aagtgttcgg aaatcttttt cgcgtattcg taagcctgcc
    15421 ggtgcagttc ggactcgatc gggttggacg tgcaaagcac gttgcggttc atatccgccg
    15481 ccgtggcgat ggaatccaaa cccagtttgt gcaagaggcg gtgcatcgtc tgcaacttgg
    15541 ctttcggcac gccgtgaaat tggaaggttt gccggttggt cagccggatg gagcggtaat
    15601 gactgttttc ccgggcaaat ttgtccagtt ctatccattg ggacggtttg atgatcccgc
    15661 ccggcagccg gcagcgcaaa agcataaatt tcaagggctc gagttttgcc tcggcgcgtt
    15721 cggcgcggat gtcgcggtcg tcctgctcat acataccgtg gaagcggatg agttggaagt
    15781 tgtcgccttt gaagccgccc gtgagcgggt ctttcaaatc gtccaaaatc gtgccgcgta
    15841 aaaaattgct ttcggttttc agacgttcgt tgtcggatag cggtttttct tgccacgcca
    15901 aaccttttgt cttggtctgt acggtcattt tgtgttcctc ccgattatat ttaatcaata
    15961 aacatcacgc tgatagcgtt tttcttcgcg cagcatatcc aaatattctt ctgcgccctc
    16021 ttcgtccaaa tgtcctgccc cgataatcac atccagcaag gcggcctcca cgtcttttgc
    16081 catttttgcc gcatcgccgc acacatagat atgcgcgcct tcctgcagcc attgccaaag
    16141 tccttccgcc tgttcgcgga ttttgtcctg cacatagatt ttttcttcct gatcgcgcga
    16201 ccaggcgaaa tcgtatctgt gcaggaagcc gtctttggca aactgctgcc attcggtttg
    16261 atagagaaaa tcacgggcaa aatgcggatt gccgaaaaac agccagtttt tgccttccgc
    16321 attttctgcg gcacgttgtt ggacgaaagc gcggaacggt gcgacgccgg tgcccgagcc
    16381 gatcatcaca atcggcttgc ggctgtcttc gggcagcctg aagccgtcgt tgcgttccac
    16441 aaacacgcgc accgtgccgt cctcttccag ccggtcggca aggaaacccg atgcgccgcc
    16501 cgccctggcg cgcccttcgt gttcgaaacg caccgcgccg acggtcaggt gcacttcgtc
    16561 ccccacttcc gcctgcgacg aggaaatcga atacaggcgc ggcgcaagcg ggcgcagtag
    16621 gccggcgaat tgttccgccg tcagttttgc cgggaagcgg tgcagcacat cggcaatcgg
    16681 cgtgctttgc acaaagcctt gcaaaacggc gttgtcggca gcaatacggt cgagttcgtc
    16741 atcatcggcg aacggggcat agcctttgac aaaggcgggg gtgttttgcg tgagttcaaa
    16801 atgggataac agtgcggagg caaccggcag ggtttttccg cccgcctgta tttccgttgc
    16861 ctgatcgatg ccgagcaggt ctaggatttc cctgaccagt gccggatcgt tgtcaaacca
    16921 aacgccgagc gcgtcgcccg ggaggtagtg caaatccgaa ccgctcaaat cgatttcgat
    16981 gtggcgcacg tctttatcgg attggcgggc ggtgattttc tgattggcca gcagggcggc
    17041 gggaaagggg tctgccttgc agtacctgcc atccggtgcc gtctgaaggc cggcgggggg
    17101 cgttgtctgc ggcgcgggcg ttgcccggtt ttttgcggct tcttctttta agcgcgcgac
    17161 aatgcggcct gtccatccgt ctgcggaggc ggtaaagtcc aaatccgcat caacgcgttc
    17221 gagcaggcgt ttcgccccca attcttcaaa acgccggtcg aaatctttac ctgcctgaca
    17281 gaaattcgga taggagctgt cgcccaagcc cagtacggca aattggagtt tgtccaattt
    17341 cggggctttt ttgccgttca gcagtttgtg cagcacgacg gcttcttccg gcggttcgcc
    17401 ttcgccttgg gtggaggtaa ccagcagcag gcggcgttcg ccggcgatgt ttttcgcctt
    17461 atagtctttc agttcggcgc gactgacttg gatgccggcg gcttccaggc tgtccgccgc
    17521 tttgtcggca acggatttcg cattgccggt ttgcgaggcg gaaaggacgg ttacggaaaa
    17581 aggttctgcc gccggcaatg ccgtctgaag cgcgggcagt cctgcagatg ccccgtttcc
    17641 tgcttttgcc caagcgtagc cggacagcca cgcccattgt gccgcgtcca gcaccgacag
    17701 gagctgcgtg atttcgggcg gcagaggcgg taatggcgga tttgtgttct gcatatcgtg
    17761 ttcactcata aaatcatacc tgccgcaaca gtgccgtatg tcgcttcgtc tatcaggata
    17821 aacgaaccgg cggcagtgtt ttccgcataa ggcgttgccg taacgggttt ttgaaggttg
    17881 atgcggactt tggcgatgtc gttcatcttc aaggattccg cgccggcctc ttgttccagc
    17941 gtgcggacat ccaaaacgct ttcaatttcc ccgacttttg ccgacacggt ttgcgtgccg
    18001 tgcttgagca ggtatttgcg cgcggtgttg agcggacgtt cgtcaaacca gcaaagcgtg
    18061 gcttccagat gtttttgcgg ggcgagcggg gaatttttat cgacaaaaag gtcgccgcgc
    18121 gaaacatcga tgtcgcgatc cagccggagg gttgccgcct cgccggcaaa agcctgcgcc
    18181 acttcccctt tcggcgtgat gatttcggac acttcggcgg tcagcccgtt cggttcgatg
    18241 cggacggttt gcccgacggc gaccgaaccg cgttcgatgc gcccctgata gcctcggaaa
    18301 tcatcggcct tgtcggcatc ttggcggacg accagttgca cggggaaata aaaatcgtcg
    18361 gcggtgcggc tgacttcgtc cgcccccggc agggtttcca aaatggacaa taagggttcg
    18421 cctttatacc aaggcatatt gccgccgggg taaacaatgt tgtcgcccaa gagtgcggac
    18481 accggtacga aatgcgcgtc tttcaaaccg agctgttcgg caagtcggcg gtatgcctcc
    18541 acaatggcgt tgaatttgtc ttcgctgtaa tccagcaggt ccattttgtt gaccgccacc
    18601 acaatatgcg ggcagttgag ttggcggagg atggcggaat ggcgtttggt ctgcggcaga
    18661 agctgcaagg gctgcgcgcc gaaatccagt tgggatgcgt caaccagcac gactgccgcc
    18721 gaagcggtgc ttgcgcccgt aaccatattg cgcgtgtatt gttcgtgccc cggcgtgtcg
    18781 gcgatgatga atttccgttt cgccgtggaa aaatagcggt atgccacatc gatcgtaatg
    18841 ccctgttcgc gttcggcttc cagtccgtcg gtcaggatgg agaagtctat ggcttctttc
    18901 aaacctttgc ttttgccgga ttccaaggtt ttgatttggt cggacagcag ggctttgctg
    18961 tcgtagagca gccgtccgat cagggtgctt ttgccgtcat cgacgctgcc ggcggtaatg
    19021 aagcggagcg gggcctggtg ttgtgccgtc atattttctt cctcatatct gcttaaaggg
    19081 tttttgaaat ttagaaatag ccttcttttt tgcgtttttc cattgccgcc tcgcttgcct
    19141 gatcgtccag ccgggtcgcg ctgcgttcgg aaatgtcggt aactgccgtt tccctgataa
    19201 tctccgtcgg cgtggacgcg gtgctttcta ccgggcaggt gcagctgatg tcgccgacgg
    19261 tgcggaagcg gacatcaagg atttcggagg tttcagacgg cattttcggc gtaagcggcg
    19321 taacggggac cagcagcccc ctgcgtctga ccacttcgcg cctgtggctg taataaatcg
    19381 gcggcagctc gaggttttcg cgggcgatgt attgccagat gtcgagttcc gtccagttgg
    19441 aaatcgggaa gacgcgcata ttttcgcctt tgtgcagcct ggtgttgtac agcgaccaca
    19501 gctcggggcg ttgcgccttc ggatcccatt gtccgaactc gtcgcggaac gagaaaatcc
    19561 gttctttggc gcgggctttt tcttcgtcgc gccgcgcgcc gcccatcagc gcgtcaaagc
    19621 cgtttgcctc gatggtttcc aacagcgtaa ccgcctgcgc cgcattgcgc gaatcggttt
    19681 ctttgcgtaa aactactgtg cctttagcga tggagtcttc cacgcgcccc actatcaggc
    19741 gggcattgag ttttgccgcc tgcgcgtcgc ggaaggcaat cacttcgggg tagttgtgcc
    19801 ccgtgtcgat atgcaccagc gggaagggca gttttaccgg cctgctgccc agccggaagg
    19861 ctttgcaggc gagggcgagc aggaccacgg aatctttgcc gccggaaaag agcagggcgg
    19921 ggttttcgca ttctgccgcc acttcgcgga taatgtggat ggattcggat tccaaccagt
    19981 cgagttggac gttgttcggt tcggttttcg tcatacgata ttccttattt cttctgtttg
    20041 atccttatga attatttgtg cagcccgcat tctttgctgt ttttatcttc ccaccaccac
    20101 cgcccggcgc ggatgtcttc gccggccttg acggggcggg tgcaggggtc gcagcctata
    20161 ctgggaaagc cttgccggta caaatcgttg taaggcacat tgttggcaag gatgtatgcc
    20221 cacacgtcgt gttccgacca gtcgaaaatc gggttgtatt tatcgatgcc gcgcccggca
    20281 tcatattcgg caaacggcag ttccgtgcgt gtggcggact gttcgcggcg ttgcccggta
    20341 agccaagcat ccgccccggc aatggcgcgg tcgagcggtt cggtttttcg gatgcggcag
    20401 cattcgcggc gcgcttcaac gctgtcgtaa aaggcaaacc tgcctttgct ttccacataa
    20461 tgcagggcat cttcccgtat cggttggaaa cgcttgattt gcatatgcgg ataaacacgt
    20521 tcaatcctat ccaacaggtt taaagtttcc gcgtgcagca gccccgtatc caaagtaaaa
    20581 ataccgatat tgaggttttc tccggcgata aggtcggtaa ttaccatatc ttccgcagca
    20641 aggctgctgg caaaccgtgc atcccggtgg ctgccggcaa tccggtgcag gcgttgtttg
    20701 agggtttccg ttttttccgc caaagccgtt tcactgccat tttcaatcgg cggaattttc
    20761 cataaagcag gtttgaaaat tttcattttg tccgccttgc tttatgcggc ttgttgttct
    20821 tgtccggtgc ccagtccgtc caatgcaaaa tacgcgtgtt cggccggatt gctttctttt
    20881 ttggcgtttt cgccgaacca agccagtttt tcgtgcagcc ccaccacttc gcctatgaca
    20941 atcaatgccg gattcggcgc ggtttcggcg agttcggcaa ggttggcgag cgtgccggtt
    21001 gcggtttttt gagccggcag cgtgccttgg ctgataacgg ctgccggcgt gtcgggcgag
    21061 cgtccgtgct gttgcagccg ttcggcaatc agggcggctt tgagcgcacc catataaatc
    21121 accaaggtct ggcggctgcg ggcgagggtc tgccattcga tgtcgggcgc atccgccttg
    21181 cggtggccgg ttacgaaaac cgcactttgg gcataatcgc ggtgcgtgag cgggatgccg
    21241 gcataggcgg tcgcgccgac ggcggcggta atgccgggga cgaccgaaaa cggaatctga
    21301 tggcgtgcca aggtttccaa ttcttcgccg ccgcgtccga acacgaaagg gtctccgcct
    21361 tttaaacgca ccacgcgcct gccttcgcgg gccagcctga ccataagcgc attggtgtcc
    21421 tcttgcgggg tgcggccgcc ccgggcgcgc ttgccgacaa aaatccgttc cgcatcgcgg
    21481 cggacgaggg acagtatgcc gtctgaaacc agcgcgtcgt aaagcaccac gtctgcctgc
    21541 tggatttcct gcagcccttt gagcgtcagc agccccgcat cgccgggacc cgcaccgacc
    21601 aaagacacaa aaccgccttg ataattttgt tccaactgct ttgccaactc ctgttcggct
    21661 tgggcggttt gttgattttt aacgagggcg gcaaaacggc cgttgaactg cttttcccaa
    21721 aaacggcggc gttcggtaac ggatttcagt ttggctttga ccgcatcgcg ccatcttccg
    21781 gagatttccg ccatatcgcc caaagacggc ggcagcaggg cttccagttt ttcacgcagc
    21841 aaacgggcga ggacgggcgc gctgccggag ctggaaacgg caatttgaac cgggttgcgg
    21901 tcgataaccg atgggaagat gaagctgcaa tggtcgcggt cgtccaccac gttgaccggc
    21961 ttttggcagc tttcggcaag atggaaaacg cgccggttga gggcttggtc gctgcttgcc
    22021 gcaatgatga ggaaaaccgt gcggatgtgt tcggcacgaa attcttcggc aagccacagg
    22081 attttgtttt ccgccgccaa cgcggagagt tcggtattca ggtgttttgc ggcaaccctg
    22141 acctctgcgc ccgccttcag cagcaggctg attttgcgtg cggcgaccgc gccgccgcct
    22201 acgaccaata cggggcggcc ggcgaggttg gcgaaaatgg ggaaataatt cactggctga
    22261 ctc
//
LOCUS       DAXHPV010000018        22126 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.018, whole genome shotgun sequence.
ACCESSION   DAXHPV010000018 DAXHPV010000000
VERSION     DAXHPV010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 22126)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22126)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22126
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.018"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            153..1058
                     /locus_tag="ACFM6C_000480"
     CDS             153..1058
                     /locus_tag="ACFM6C_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HFC6157981.1"
                     /translation="MGKGGDIVVGNGKKYAAPLLVLGCVVFGLGSLIVRSVPVGSYAI
                     AFWRLLISVFVFWFLARFFRQKFPKNRKTVRYALTAGVFLAFDLALWHESIHAVGPGI
                     STLLNSLQIFFLSAIGVFFFGERLSGLKKAGLISAVAGVAMIAGAEFGYNGNAVWGFV
                     SGLVSGLMLALSMVFVRKTHEIETVALFPSMMILSLGGAVSLVVPALLMDGGALYPTT
                     WKDAGLVLVYGVVMQCFAWAMVAYAIPLLSLSLTGLLLLSEPVAALFIDYFGLGKPIE
                     GVQWAGVALTLSAIYLGSLKQQSEP"
     gene            1104..1253
                     /locus_tag="ACFM6C_000481"
     CDS             1104..1253
                     /locus_tag="ACFM6C_000481"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6157982.1"
                     /translation="MNWQAVKTGKTKHAGNGAERKMPSEALSDGIGAGRIKKAASAGM
                     AMQLK"
     gene            complement(1472..2491)
                     /gene="lepB"
                     /locus_tag="ACFM6C_000482"
     CDS             complement(1472..2491)
                     /gene="lepB"
                     /locus_tag="ACFM6C_000482"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HFC6157983.1"
                     /translation="MNTMLMSGAAAALLAGIILYFKSDKKRQENGEWSSGLEYAYILT
                     AVGVFAALSLFMSFTAVFLIFVVLCGTAWGVYKYRLRTHPEISESSHFGDYFGSFFPT
                     VLVLFLIRSFIAEPFQIPSSSMRPGLIKGDFILVGKFSYGLRVPVLNNVFIPTGKIER
                     GDVVVFNYPLQPEMTYIKRIVGIPGDVVEYRNKVLTVNGKPTSDIPDGTYRYPDDTDP
                     SEIHNTDMFRSGLDGKSFNILKKEGQPAVSLPVLGKYTSDIMSENGYSIEQSGLEHCQ
                     YADDGSGFVCKVPEGRYFAMGDNRDNSADSRYWGFVDDKLVVGKAMFILMNFGDFGRA
                     GTAIR"
     gene            complement(2634..4427)
                     /gene="lepA"
                     /locus_tag="ACFM6C_000483"
     CDS             complement(2634..4427)
                     /gene="lepA"
                     /locus_tag="ACFM6C_000483"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HFC6157984.1"
                     /translation="MKNIRNFSIIAHIDHGKSTLADRFIQYCGGLDLREMSTQVLDSM
                     DIEKERGITIKAQTAALNYKARDGQVYQLNLIDTPGHVDFSYEVSRSLSACEGALLVV
                     DASQGVEAQTVANCYTAIDLGVEVVPVLNKIDLPAADPERVEQEIEDIIGIDAVGAVQ
                     CSAKSGIGVEDVLEEIVAKIPAPTGDENAPLQAVIVDSWFDNYVGVVMLIRVKNGTIK
                     LKDKVRFMSTKAETQVEQLGVFTPKSVQKQELKAGEVGFLITGVKELGQAKVGDTVTL
                     VANPASEPLPGFQEVQSQVFAGLYPVESHDYEALRDALEKLQLNDASLKFEPEVSQAL
                     GFGFRCGFLGLLHLEIVQERLEREFDMDLITTAPTVVYEVVLKSGEKIEVENPSKLPD
                     IGSIETILEPIITATILVPQEYVGNVMTLCNQKRGVQVNMQYMGRQVMLTYDLPMNEV
                     VMDFFDKLKSTSRGYASLDYHFKEFQPSDLIKLDIMVNGEKVDALSLIVHRQSAVHRG
                     RELASKMRELIPRQMFDIAVQAAIGSQIIARENVKALRKNVLAKCYGGDITRKKKLLE
                     KQKAGKRRMKQVGNVEIPQSAFLAILQVSDK"
     gene            complement(4569..5270)
                     /locus_tag="ACFM6C_000484"
     CDS             complement(4569..5270)
                     /locus_tag="ACFM6C_000484"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008782 - adenosylhomocysteine
                     nucleosidase activity [Evidence IEA];
                     GO_function: GO:0008930 - methylthioadenosine nucleosidase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009164 - nucleoside catabolic process
                     [Evidence IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HFC6157985.1"
                     /translation="MSLKTVAVIGAMEQEIKLLREMMENIKAVSFGRFSAYEGELAGK
                     RMVLALSGIGKVNAAVATAWIIREFAADCVINTGSAGGLGKGLKVGDVVIGTETAHHD
                     VDVTAFGYVWGQVPQLPAVFVSDGLLVGKAKQAAEVFEGAAVEQGLIVSGDRFVHSSE
                     GVAEIRKHFPKVKAVEMEAAAIAQTCHQLETPFVIIRAVSDSADEKADISFDEFLKTA
                     AASSAKMVAEIVKSL"
     gene            5438..6568
                     /locus_tag="ACFM6C_000485"
     CDS             5438..6568
                     /locus_tag="ACFM6C_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HFC6157986.1"
                     /translation="MFTDENMTAKEELFAWLRHMNKNKGSDLFVTTHFPPAMKLDGKI
                     TRITDEPLTAEKCMEIAFSIMSAKQAEEFSSTNECNFAISLPDTSRFRVNAMIQRGAT
                     ALVFRAITSKIPKFESLNLPPVLKDVALKKRGLVIFVGGTGSGKSTSLASLIDYRNEN
                     SFGHIITIEDPIEFVHEHKNCIITQREVGVDTENWMAALKNTLRQAPDVILIGEIRDR
                     ETMDYAIAFAETGHLCMATLHANSTNQALDRIINFFPEERREQLLTDLSLNLQAFISQ
                     RLVPRDGGKGRVAAVEVLLNSPLISELIHNGNIHEIKEVMKKSTTLGMQTFDQHLYQL
                     YEKGDISLQEALKNADSAHDLRLAVQLRSRRAQSSSPDLELL"
     gene            6602..7579
                     /locus_tag="ACFM6C_000486"
     CDS             6602..7579
                     /locus_tag="ACFM6C_000486"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HFC6157987.1"
                     /translation="MIYPWHNEQWRQIAEHWERRPNAWLFAGKKDTGKTTFARFAAKA
                     LLCETPAPGCKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREII
                     DNVYLTSVRGGLRVILIHPAESMNVQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTI
                     KSRCRKMVLPAPSHEEALAYLRERGVAEPEERLAFHSGAPLFDEADGVRALRIKLLDI
                     LAEPRLLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHMKPVYYPAYEDRLLQ
                     TVSGFRPRNVFAAEDMLKQLAPYGFHTLNVKMQIEHLLINYLELKKENG"
     gene            7583..7933
                     /locus_tag="ACFM6C_000487"
     CDS             7583..7933
                     /locus_tag="ACFM6C_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HFC6157988.1"
                     /translation="MSDGQNIPAKMMSLQLKDMNLLYSSYMPFLEHGGLFVQTNDVFS
                     IGDDILLAVEILNFPKLFLPTKVAWINPARTSSKPKGVGLAFTKHENCLKVKDQIEVE
                     LGNTIGGSRPTFTM"
     gene            7938..8717
                     /locus_tag="ACFM6C_000488"
     CDS             7938..8717
                     /locus_tag="ACFM6C_000488"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HFC6157989.1"
                     /translation="MHIIDSHCHLNFEGLKERLPEVLSNMEANGVGQALAISVSRESF
                     SEVFAIAEAHEHIYCTIGVHPDSKEAEEFSIAEMVAAAASPKVVGIGETGLDYYWCKG
                     DLSWQHKRFADHIEAANQTGLPVIVHTRDAAADTLSILKECRVNSGVIHCFSEDIGFA
                     RAAMDLGLYISFSGIVTFKNAPLVQEAAKYVPDDRILVETDAPFLAPVPKRGRQNEPA
                     FVRHTAEHIAKLRNQTLEQVAAYTTENFYWLFKKVPDMRVV"
     gene            8743..8958
                     /locus_tag="ACFM6C_000489"
     CDS             8743..8958
                     /locus_tag="ACFM6C_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF333 domain-containing protein"
                     /protein_id="HFC6157990.1"
                     /translation="MKAIHPYACPRCCRLPANTFRTGMANSASKFCIAKGGRREVKKD
                     ESGGGYALCHLPDSRIVEEWEYFRSQH"
     gene            9059..9370
                     /gene="grxD"
                     /locus_tag="ACFM6C_000490"
     CDS             9059..9370
                     /gene="grxD"
                     /locus_tag="ACFM6C_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HFC6157991.1"
                     /translation="MASIHDQIKEVVTTHRVVLFMKGTKQFPQCGFSSRAVQILNAAG
                     CTDYVTVNVLENPEVRQGIKEYSDWPTIPQLYVNGEFVGGSDILMEMYEAGELQELLK
                     A"
     gene            9476..10102
                     /gene="upp"
                     /locus_tag="ACFM6C_000491"
     CDS             9476..10102
                     /gene="upp"
                     /locus_tag="ACFM6C_000491"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006223 - uracil salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HFC6157992.1"
                     /translation="MNVNVINHPLVRHKLTLMREADCSTYKFRTLAIELARLMAYEAS
                     RDFEIEKYLIDGWCGQIEGDRIKGKTLTVVPILRAGLGMLDGVLDLIPTAKISVVGLQ
                     RDEETLKPVSYFEKFVDSMDERPALIIDPMLATGGSMVATIDLLKAKGCKNIKALVLV
                     AAPEGVKAVNDAHPDVTIYTAALDSHLNENGYIIPGLGDAGDKIFGTR"
     gene            10125..10445
                     /locus_tag="ACFM6C_000492"
     CDS             10125..10445
                     /locus_tag="ACFM6C_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2322 family protein"
                     /protein_id="HFC6157993.1"
                     /translation="MNFQDYLATFPSIDHLGGLDVQDADGKTVHHIPAVQGKLGSLKL
                     YNALAERFDGKLDKEAAEQGLIWFAEHVADARAHPGKHPNIDLLEKVVQSGETLLLKP
                     LAAQ"
     gene            10696..11115
                     /locus_tag="ACFM6C_000493"
     CDS             10696..11115
                     /locus_tag="ACFM6C_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein Gly1ORF1"
                     /protein_id="HFC6157994.1"
                     /translation="MKKMFLSAVLLLSAAAQTVWADTVFPCKTDNNKYIEVQKINRNL
                     YEYSFGSAAKKEIAIRNSKADLLGRSDRWQGMGSGRRATMKFQNGEFMYTIWTGFDSV
                     THTESSGVVVERRGKEVARVGCTPKTAQANFNDDDFS"
     gene            11136..11897
                     /locus_tag="ACFM6C_000494"
     CDS             11136..11897
                     /locus_tag="ACFM6C_000494"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HFC6157995.1"
                     /translation="METAKPVMLIVRPSGRAAEDVETCLNAGWRAEVLSPIEIEADAA
                     GLELLSEQYARADAVFWVSPTAVETAVPYLNLSDGIKAQIAVGQGSRRALERCLVRTV
                     IAPDDGNDSEAVLRLPVWNSLPEGARVLFVRGHGGRDFLMNALQEKGFRTEVAEVYFR
                     RHKPLNFQNFQTENIAAAYITSTELVRLLFGQLPPQFSRFFKSLLYFTHHPRIAEALK
                     REGVCSVETVPTLEAALSHSSISVSDGMVFPGTSN"
     gene            11972..13243
                     /locus_tag="ACFM6C_000495"
     CDS             11972..13243
                     /locus_tag="ACFM6C_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HFC6157996.1"
                     /translation="MPSETSSPRKENETEVHIPAAPFIVKQSGSNALATCALVLAALG
                     LGASGFLFVQGQNVLKNQELAFNQKIDKAALGESENAALLKDNLNRQSAIQSELDRLD
                     SGVKANGEQILMTQKSYRELTKGRADWLVDETETILNLAAQQLVLTGNIQTAVGVLEH
                     IDSRLSRFDQAELLPLKQAISSDLAELKNRPYVDISGTALRIDRLETAVSGLPLMLDG
                     VLKPGVQARNEAVSASWWNVWEKSLGTLKGLVEIRRLENNDAMLISPEQAYFVRENLR
                     LRLLDARTALMQRNSEVYQSDLNNAETAVRQYFDAKSPATQSWLKELAELKALDVRMT
                     ADDGLKASLNAVRAYRDGTRMTAAENQEAEQAASEPANEKTASESAAASDVKTIEAPS
                     LPSELKPEQPAKKQTVPEKAGRSPSAKGERA"
     gene            13240..14457
                     /locus_tag="ACFM6C_000496"
     CDS             13240..14457
                     /locus_tag="ACFM6C_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme biosynthesis protein HemY"
                     /protein_id="HFC6157997.1"
                     /translation="MKTVVWIVILFAAAVGLALALGIYTGDVYIVLGQTMLRINLHAF
                     VLGLLIAVVVWYFLFKFVIGILNIPEKMQRFSLARKGRKAALYLNKAGLAYFEGRFEK
                     AELEASRVLGNKEAGDNRTLALMLGAHAAGQMGNTELRDRYLAEIAKLPEKQQLSRYL
                     LLAESALNRRDYETVEANLHAAAKMNAGLTRLVRLQLRYAFERGDALEVLAKTEKLSK
                     AGALGESETKQYQNWAYRRQLADAADAAALKTCLKRIPDSLKNGELSVSVAEKYERLG
                     LYADAVKWVKQHYPHNRRPELLEAFVESVRFLGERDQQKAIDFADAWLKEQPDNALLL
                     MYLGRLAYGRKLWGKAKGYLEASIALKPSISARLVLAKVFDETGEPQKAEAQRNLVLA
                     SVAEENRPSAETC"
     gene            14532..15596
                     /gene="hemE"
                     /locus_tag="ACFM6C_000497"
     CDS             14532..15596
                     /gene="hemE"
                     /locus_tag="ACFM6C_000497"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HFC6157998.1"
                     /translation="MTLLKNDTFLRALLKQPVEYTPIWMMRQAGRYLPEYKATRAKAG
                     SFLDLCKNTELATEVTIQPLERFDLDAAILFSDILTVPDAMGLGLYFAEGEGPKFKRA
                     LQHEADIAKLHVPDMEKLQYVFDAVTSIRKALDGRVPLIGFSGSPFTLACYMVEGGGS
                     KEFRTIKTMMYSRPDLLHKILDTNAQAVTAYLNAQIDAGAQAVQIFDTWGGVLSDAAF
                     KEFSLKYIRQIVAGLKRESEGRRVPVIVFAKGGGLWLESMAEIGADALGLDWTCNIGE
                     ARRRVGKQVALQGNFDPFALFGTPESIRTEAARILADYGQGSGHVFNLGHGINQHADP
                     EHAKILVDTVHELSRHYHGG"
     gene            15782..17161
                     /gene="radA"
                     /locus_tag="ACFM6C_000498"
     CDS             15782..17161
                     /gene="radA"
                     /locus_tag="ACFM6C_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HFC6157999.1"
                     /translation="MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPK
                     NARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELDRVLGGGLVDGAVILLGGDPGIG
                     KSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
                     LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTK
                     DGAIAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVS
                     NPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLA
                     MLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVF
                     GEIGLSGEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEA
                     IDICREDRD"
     gene            complement(17433..17912)
                     /locus_tag="ACFM6C_000499"
     CDS             complement(17433..17912)
                     /locus_tag="ACFM6C_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HFC6158000.1"
                     /translation="MKHILPLIAASALCISTASAHPAGEPSTQNETAMTTHTLTSKYS
                     FDETVSRLETAIKSKGMDIFAVIDHQEAAHRNGLTMQPAKVIVFGTPKAGTPLMVKDP
                     AFALQLPLRVLVTETDGKVRAAYTDTRALIAGSRIGFDEVANTLANAEKLIQKTVGE"
     gene            complement(18037..18396)
                     /locus_tag="ACFM6C_000500"
     CDS             complement(18037..18396)
                     /locus_tag="ACFM6C_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HFC6158001.1"
                     /translation="MNIKHLITAALIASAAFAAQAAPQKPLSAAQTAQHPAVWIDVRS
                     EQEFSEGHLHNAVNIPVDQIVRRIHEAAPDKDTPVNLYCRSGRRAEAALQELKKAGYT
                     NVANHGGYEDLLKKGMK"
     gene            complement(18435..22049)
                     /gene="recB"
                     /locus_tag="ACFM6C_000501"
     CDS             complement(18435..22049)
                     /gene="recB"
                     /locus_tag="ACFM6C_000501"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009338 - exodeoxyribonuclease V complex
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008854 - exodeoxyribonuclease V activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HFC6158002.1"
                     /translation="MSAPIQAFDSLTVPIAGTNLIEASAGTGKTYGIAALFTRLIVLE
                     QKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLESKEIAKLGDDTLSDGIAAYCAE
                     HHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
                     QAPFDVELTEEDGDRLLIPAQDFWRERVSNDPVLAALAFKRKAVPQTVLAQIRAYLSR
                     PYLNFRRPQADLKQAQHNAETSWQTVCRLLPELEAGFWRIHPDLNGNSYRKNSFGNLF
                     KELAQKSAAGQLPFLDKDTHDRLLKLASDKLEAGLKKGKTPDAAVFAELQKLADFGRD
                     LNALEEAEEATMIRLQLDLIEYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAET
                     LARAVAENWETALIDEFQDTDPLQYEIFQKIFIAQNRPLFLVGDPKQAIYSFRGADIY
                     AYLQAAEDARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESR
                     LSPKRPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNFKGCPLQ
                     SGDIAVLVRTHNEAVMVSAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRA
                     GTLRFVLTSGIFGYDAQQLHDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQT
                     HGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAENNSNDNR
                     AIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAK
                     AQLSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQ
                     DSRETVRRAYACEKDGIAMLKRNWRRLADNAPSGTDFAFTEDAPPPAVYRGNAGQTAE
                     FAANSIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVAAMPSETPTAS
                     DGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLITDKLKKYGFEEIWLPAVAEM
                     AEACQKTPLTGAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRA
                     AAETLDFHTVNGFLNGFIDMVCQDPDGNICVIDYKSNHLGADASAYTRQAMDEAVAHH
                     HYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRGLDGKGGGVWRWDIDAAALEQIK
                     "
BASE COUNT         5014 a         5755 c         6248 g         5109 t
ORIGIN      
        1 gggttttatc tggcaggacg gttttttgcc ccaacggaaa atagcctgcc tgcccgtaaa
       61 atcagccgtt tgtccgggtg cagccggggc tttgggcttc agacggcata ttttcggaat
      121 ggcggcattc ttgccgtcgg cgcggcagcc gtatggggaa gggaggggat attgtggtcg
      181 gtaacggcaa aaaatatgcc gcaccattgc tggtgctggg ttgcgtggtg ttcggtctgg
      241 gcagtctgat tgtcagatcc gtccccgtcg gttcgtatgc aatcgcattt tggcggttgc
      301 tgatttcggt gttcgtattt tggtttttag cacggttttt caggcaaaaa ttcccaaaaa
      361 acaggaaaac cgtccgatat gccctgacgg cgggcgtgtt tctcgctttc gatttggcgt
      421 tgtggcacga aagcatacac gcggtcgggc cgggtatttc caccctgctc aacagcctgc
      481 aaatcttttt cttgtcggca atcggtgttt tctttttcgg cgagcgtttg agcgggctga
      541 aaaaggcagg cttaatatcg gcagttgccg gcgtggcgat gattgccggt gcggaattcg
      601 gctacaacgg taatgcggtt tggggattcg tcagcggttt ggtatcggga ctgatgctcg
      661 ccctgtcgat ggtgttcgtc cgcaaaaccc atgaaatcga gacggtggcg cttttccctt
      721 caatgatgat tttgagttta ggcggcgcgg tatcgttggt tgttccggca ttgctgatgg
      781 acggcggcgc gctttatccg acgacttgga aagatgcggg tttggtgctt gtgtacggcg
      841 tggtgatgca gtgcttcgcg tgggcgatgg ttgcctatgc gattccgctg ctttcgctgt
      901 cgctgacggg gctgctgctt ttgtccgaac cggttgccgc cctgttcatc gattatttcg
      961 gattgggcaa accgattgaa ggcgtgcagt gggcaggggt ggcgctgacg ctttcggcaa
     1021 tttatctcgg ttcgctgaaa cagcagtccg agccttgact ccgtccggca tcagattttc
     1081 tgccgtggca aacctgcgta cgattgaact ggcaggcagt caaaaccggc aagaccaaac
     1141 acgccggcaa cggcgcggag cggaaaatgc cgtctgaagc cctttcagac ggcatcgggg
     1201 cgggcagaat caaaaaagcc gcctccgctg gaatggcaat gcaactaaaa taatgtccgt
     1261 atttccatat gccgcccaca ccgtcagtcg gacgaaatgc cctttattca atgggatggg
     1321 tttccacaca aacggaaata tagtggatta aatttaatcc actatattat ccccgaggct
     1381 gccggcaggg aaacaaggcg tttgatgata aaaatgccgt ctgaaacagg gttcggatgg
     1441 catttttgat gttccggcgt aattttccgg cctaacggat tgccgtaccg gccctgccga
     1501 aatcgccgaa gttcatcaaa atgaacattg ccttgccgac aaccagcttg tcatccacaa
     1561 atccccagta gcgcgaatcg gcactgttgt cgcggttgtc gcccatagcg aaatagcgtc
     1621 cttcgggaac tttgcacacg aaaccgctgc cgtcgtcggc atattggcag tgttccaaac
     1681 cgctttgctc tatggaatat ccgttttcag acataatatc ggaggtatat ttgcccaata
     1741 cgggcaggga aacggccggc tgtccttctt ttttcagaat attgaaggat ttgccgtcca
     1801 aaccgctgcg gaacatatcc gtgttgtgga tttcggatgg gtcggtgtcg tcgggataac
     1861 ggtatgtgcc gtcaggaata tcggaagtgg gtttgccatt taccgtcaaa actttattcc
     1921 gatattcgac cacatcgccc ggaatgccga caatacgctt gatgtaggtc atctccggtt
     1981 gcaaaggata attaaaaacg accacatcgc cccgttcgat tttgcccgtg gggatgaata
     2041 cattgtttaa aacgggtacg cgcaggccgt aggaaaattt gccgaccaaa atgaaatcgc
     2101 ccttgatcag gcccgggcgc atcgagctgg acgggatttg gaacggttcg gcgataaacg
     2161 accggatgag gaacaatacc aaaacggtag ggaagaaact gccgaaataa tcgccgaagt
     2221 ggctgctttc cgagatttcg ggatgagtcc tcaggcggta tttgtatacc ccccaagccg
     2281 taccgcacaa tacaacgaaa atcaggaaaa cggcggtaaa gctcataaac agggacaaag
     2341 cggcaaacac gccgaccgcc gtcaggatat aggcgtattc gagaccggaa ctccattctc
     2401 cgttttcctg tcgtttcttg tcgcttttga aataaaggat gatgccggca agcagcgcgg
     2461 cagccgcacc cgacattaac attgtgttca ttgttgttcc ttaatgctta aaaacccgcc
     2521 tgtccgtgca accgttttaa ggcggcaaat tgcaaaattt gtttgcgggc gcgtgcccct
     2581 gaaattaggg cggtttgagg ggtgttcccg acgcgccgcc ctgtgtgcca gagttatttg
     2641 tcgctcacct gcaaaatcgc caagaacgcg ctttgcggaa tttccacatt gcccacttgt
     2701 ttcatacggc gtttacctgc cttttgtttt tcaagcagtt ttttcttacg cgtaatatcg
     2761 ccgccgtaac atttcgctaa gacgttttta cgcagtgctt tgacgttttc gcgggcgata
     2821 atctggctgc cgatggcggc ttggacggca atgtcgaaca tttggcgcgg aatcagctcg
     2881 cgcattttcg atgccagctc gcggcctcgg tgaaccgcgc tttgacggtg cacaatcagg
     2941 cttaaggcat cgactttttc gccgttgacc ataatatcca gcttaatcaa atcagacggt
     3001 tggaactctt tgaaatggta gtccaacgaa gcataaccgc gcgaagtgga tttgagtttg
     3061 tcgaagaagt ccatgacgac ttcgttcatg ggcaaatcgt aagtcagcat gacttggcgg
     3121 cccatatatt gcatattgac ctgaacgccg cgcttttggt tacacaaagt catgacgttg
     3181 ccgacgtatt cctgcggcac gaggatggtc gcggtaataa tcggctcgag aatggtttcg
     3241 atgctgccga tgtcgggcag tttggacgga ttttcgactt cgattttttc gccgcttttc
     3301 aacacgactt cataaaccac cgtcggcgcg gtggtaatca aatccatgtc gaactcgcgc
     3361 tccaagcgtt cctgcacgat ttccaagtgc aacagaccca agaagccgca acggaagccg
     3421 aagcccaatg cttgggaaac ttcaggctcg aattttagcg aagcgtcgtt aagctgtaat
     3481 ttttccaaag cgtcacgcaa ggcttcatag tcgtggcttt ctacggggta gagacccgcg
     3541 aatacttggc tttgcacctc ttggaagccg ggcagcggct cagaggcagg gttggcaacc
     3601 aaagtaaccg tatcgccgac tttcgcctgt cccaattctt tcacgccggt aatcaaaaag
     3661 cccacttctc cggctttgag ttcttgtttt tgaactgatt tcggcgtaaa aacgcccagc
     3721 tgctcaacct gagtttccgc cttggtgctc ataaagcgca ctttgtcttt cagcttgatg
     3781 gtgccgtttt tcacacgaat caacataact acgccgacgt agttgtcaaa ccatgaatca
     3841 acaataaccg cttgcagcgg cgcgttttca tcgccggtcg gcgcaggaat tttggcaacg
     3901 atttcttcca aaacgtcttc cacgccgatg ccgcttttgg cggaacactg caccgcgccg
     3961 accgcatcga tgccgatgat gtcttcaatt tcctgctcca cgcgttcggg gtcggcggct
     4021 ggcaggtcga ttttgttcaa aacaggcaca acctccacgc ccaaatcaat cgcggtgtaa
     4081 cagttcgcta cggtttgcgc ttccacgccc tgcgacgcgt caacgaccaa aagcgcgcct
     4141 tcgcaagccg acagcgaacg ggaaacttcg taagagaagt cgacgtgtcc cggcgtgtca
     4201 atcaggttga gttgatacac ctgcccgtcg cgtgctttgt agttgagcgc ggcggtttgc
     4261 gctttaatgg taatgccgcg ctctttttcg atgtccatgg aatcgagtac ctgcgtactc
     4321 atttcgcgca aatccaaacc gccgcaatat tggatgaagc ggtcggcaag cgtcgatttg
     4381 ccgtggtcga tgtgggcaat gatggagaaa tttcggatat ttttcattga gttgttttta
     4441 atgctgaacg gtaggtttta gaaatgccgt ctgaacaaac agcggtgcgt ccgaatatcg
     4501 ggcgcaacgt ggaaatagcc cgatattcta acggaaaacc gctgttttgg catgatttga
     4561 taaaggtttt ataaagattt gacgatttct gccaccattt ttgcagaact tgccgccgcc
     4621 gttttcaaaa attcgtcaaa gctgatgtct gccttttcgt ccgccgaatc ggaaaccgcg
     4681 cggatgatga cgaaaggcgt ttccaactga tgacaggttt gggcaatcgc cgccgcttcc
     4741 atttccactg ctttgacttt ggggaagtgc ttgcggattt ccgccacgcc ttcgctgctg
     4801 tggacgaagc ggtcgccgct gacaatcagg ccttgttcta ccgccgcgcc ttcaaacact
     4861 tccgccgcct gttttgcttt gccgaccaag aggccgtctg aaacaaatac ggcgggcagt
     4921 tgcggcactt gtccccaaac atagccgaat gcggttacgt cgacatcgtg gtgtgcggtt
     4981 tccgtgccga tgactacgtc gccgactttc aaacccttgc ccaaaccgcc cgcgctgccg
     5041 gtgttgatga cgcagtccgc tgcgaattca cggataatcc aagccgttgc aaccgccgcg
     5101 ttgaccttgc cgatgccgct caatgcaagc accatgcgtt ttcccgccaa ttcgccttca
     5161 taggcggaaa atctgccgaa agagacggct ttgatatttt ccatcatctc gcgcaaaagc
     5221 ttgatttcct gttccattgc gccgataacg gctactgttt tcaaagacat attgctgacc
     5281 tgctgtgaat ttcggataga atgccgaatt atacacgcta acacggcagg attgagtgga
     5341 ggtggtttgt ccgtgccgtc tgaaacggtt tcagacggca cggcgggttt ttggtagaat
     5401 gggaaggtac agattgtttg aagattaggg gacgaggatg tttaccgatg aaaatatgac
     5461 cgcaaaggaa gaactgttcg catggctgcg ccatatgaac aaaaacaaag gttccgacct
     5521 gtttgtgacg acccatttcc cgcccgcgat gaagctggac ggcaaaatca cccgcatcac
     5581 ggacgaaccg ctgacggcgg aaaaatgtat ggaaatcgcc ttttcgatta tgagtgcgaa
     5641 gcaggcggaa gaattttcat cgaccaacga gtgcaacttc gccatcagcc tgccggacac
     5701 cagccgcttc cgcgtcaatg cgatgataca gcgcggcgcg acggcgttgg tattccgtgc
     5761 gattaccagc aagattccca agtttgaaag cctcaacctg ccgccggtct tgaaggatgt
     5821 cgcgctgaaa aaacgcgggc tggttatttt tgtcggcggc accggctcgg gcaaatcgac
     5881 ttcgcttgcc tcgcttatcg attaccgcaa tgaaaattcg ttcggacaca ttatcaccat
     5941 cgaagacccg atcgagtttg tccacgaaca caaaaactgc atcatcaccc agcgagaggt
     6001 cggcgtggat acggaaaact ggatggcggc gttgaaaaac acgctgcgtc aggcgcccga
     6061 tgtcatcctt atcggcgaaa tccgcgaccg cgaaacaatg gactacgcca ttgcctttgc
     6121 cgaaacgggg catttgtgta tggcgacgct gcacgccaac agcaccaatc aggcactcga
     6181 ccgcatcatc aactttttcc ccgaggagcg gcgcgaacaa ttgctgacgg atttgtcgct
     6241 caaccttcag gcgtttattt cgcaacgcct cgttccgcga gacggcggca agggcagggt
     6301 ggcggcagtc gaggtgctgc tcaattcgcc cctgatttcg gagttgattc acaacggcaa
     6361 catccatgaa atcaaagaag tgatgaaaaa atccactacc ctgggtatgc agaccttcga
     6421 tcaacacctt taccaattgt atgaaaaagg cgatatttcc ctgcaagaag cattgaaaaa
     6481 tgccgattcc gcacacgatt tgcgtttggc ggtacagttg cgcagccgcc gcgcgcaaag
     6541 ttccagcccc gatttggaac tgctctgatg gcggtatgga tttccggacg gatggtttga
     6601 aatgatttat ccgtggcata atgagcaatg gcggcagatt gcggaacatt gggagcgtcg
     6661 tcccaatgca tggctgtttg ccggcaaaaa agatacgggg aaaactacat ttgcccgctt
     6721 tgcggcgaag gcactgttgt gcgaaacccc tgcaccgggc tgcaaaccct gtggcgaatg
     6781 tatgtcctgc catctgtttg gacagggaag ccatcccgat ttttacgaaa tcaccccctt
     6841 gtcggacgaa cccgaaaacg gacgcaaact gttgcagatc aaaatcgatg ccgtcaggga
     6901 aatcatcgat aatgtgtacc tgacttcggt acggggcggt ttgcgcgtga ttctgattca
     6961 tcctgcggaa agtatgaatg tccaagccgc caacagtttg ttgaaagtgt tggaagagcc
     7021 gccgccacaa gtggtctttt tgctggtcag ccacgcggcg gacaaggttt taccgaccat
     7081 taaaagccgc tgccggaaga tggttttgcc cgcgccttcc catgaagagg cattggcata
     7141 tctgcgtgaa aggggtgtgg cggaacctga ggaacgtctg gctttccatt ccggagcgcc
     7201 gctgtttgat gaggcggacg gtgtccgtgc gttgcggatt aaactgttgg atattttggc
     7261 agaaccaagg ttgttgaaga ttttggatta cgccgcgctt ttcgataagg aaaaacttcc
     7321 gctcgccgta tttgtcgggt ggatgcagaa atggctggtc gatttgggat tgtgcctgca
     7381 acacatgaaa cccgtctatt atcccgctta tgaagacagg ctgcttcaga cggtatccgg
     7441 tttccgtccg cgcaatgtat ttgcggcgga ggatatgctc aaacagcttg ccccttacgg
     7501 gtttcatact ttaaatgtca aaatgcagat cgagcatctg ctcatcaatt atttggaatt
     7561 gaagaaagag aacgggtgaa ttatgtcaga cggacaaaat attccggcaa aaatgatgtc
     7621 gttgcagctg aaagacatga atctgctgta cagctcctat atgccgtttt tggaacacgg
     7681 cggtctgttt gtgcagacca acgacgtatt ttccatcggg gacgatattc tgcttgccgt
     7741 agaaatcctc aacttcccca aactgttcct gccgaccaaa gtcgcctgga tcaatcctgc
     7801 gcgtacttcc tccaaaccca aaggggtggg gctggcattc acaaaacacg aaaactgcct
     7861 gaaagtcaaa gaccagatcg aagtcgaact gggcaacaca atcggcggca gcagacctac
     7921 gtttaccatg taacgccatg catatcatcg attcgcactg ccacctcaat tttgaaggtt
     7981 tgaaagaacg cctgcccgaa gttttgtcca acatggaagc aaacggcgtg gggcaggcgc
     8041 tcgccatcag cgtcagtagg gaaagcttct ccgaagtctt tgccatcgcc gaagcgcacg
     8101 aacacatcta ttgcaccata ggcgtacatc ccgacagcaa ggaagccgaa gaattttcta
     8161 ttgcggaaat ggttgccgca gccgcctcgc cgaaagtggt cggcattggc gagacgggtt
     8221 tggattatta ctggtgcaaa ggcgatttgt cctggcagca caaacgcttt gcagaccaca
     8281 tcgaagcagc caatcaaacc ggactgcccg ttatcgtcca tacgcgtgat gcggcggcgg
     8341 acaccttgtc tatcctgaaa gaatgccggg ttaattcggg cgttatccac tgtttttccg
     8401 aagacatcgg ttttgcccgt gcagcaatgg atttggggct ttatatttct ttctcgggaa
     8461 tcgttacctt taaaaacgca cccttggttc aggaggcggc aaaatatgtg ccggacgacc
     8521 gcattttggt ggaaaccgat gcgccgttcc tcgcccccgt tcccaaacgc ggcaggcaga
     8581 acgaaccggc ttttgtgcgc cataccgccg aacatatcgc caaattgcgg aaccaaacat
     8641 tggaacaggt tgcggcatat acgacggaaa acttttactg gctgtttaaa aaagtacccg
     8701 atatgcgggt cgtctgaccc tgtaccgacg ataaggaaaa ccatgaaagc aattcatccg
     8761 tatgcatgtc cgcgctgctg ccggctgcct gccaacacgt ttcggacagg catggcaaat
     8821 tccgcttcca aattctgcat tgccaaaggc ggcagacggg aagtaaaaaa agacgaaagc
     8881 ggcggcggat atgccctgtg ccatttgccg gacagtagga ttgtcgagga gtgggaatat
     8941 ttccgttcac aacattgata ctgcgcgata tacggcaaat attgtgggaa gtttccgctt
     9001 ttgcgtataa tgcgtcctac ctgacaaatt ttgtcaactt tatcaaaagg aataagcgat
     9061 ggcttccatc cacgaccaaa ttaaagaagt agtaacgaca caccgcgtcg tattgtttat
     9121 gaaaggtacg aagcagtttc cgcaatgcgg tttctcttcc cgcgccgtgc aaatcctgaa
     9181 cgcggcaggc tgcaccgatt acgttaccgt caacgtattg gaaaatcccg aagtgcgcca
     9241 aggcattaag gaatacagcg actggccgac catcccccaa ctttatgtga acggcgagtt
     9301 tgtcggcggt tcggacatcc tgatggaaat gtatgaggca ggcgagctgc aagagctgct
     9361 gaaagcctga tggattcggc aatgccgtct gaacgtgttt cagacggcat tttcttttcc
     9421 ggcaaatcaa aaaaaagtat aatggcgcgt ctcaaaatca cactggaaca ccgcgatgaa
     9481 cgttaatgtt atcaaccatc cgctcgtccg ccacaaatta accctgatga gggaggcgga
     9541 ttgcagcacc tacaaattcc ggacgcttgc catcgagctg gcgcgcctga tggcatacga
     9601 ggcaagccgt gattttgaaa tcgaaaaata ccttatcgac ggatggtgcg gtcagattga
     9661 aggcgaccgc atcaagggca aaacattgac cgtcgttccc atactgcgtg caggtttggg
     9721 tatgcttgac ggcgtactcg acctgattcc gactgccaaa atcagtgtag tcggactgca
     9781 gcgcgacgag gaaacgctga aacccgtttc ctacttcgag aaattcgtgg acagcatgga
     9841 cgaacgtcct gccctgatta tcgacccgat gctggcgacg ggcggttcga tggttgccac
     9901 catcgacctt ttgaaagcca agggctgcaa aaacatcaag gcactggtgc tggttgccgc
     9961 gcccgagggt gtgaaggcgg tcaacgacgc gcatcccgac gttacgattt acaccgccgc
    10021 gctcgacagc cacttgaacg agaacggcta catcatcccc ggcttgggcg atgcgggcga
    10081 caagattttc ggcacgcgct aactgactga ttttcggagt tgatatgaat tttcaagact
    10141 atctcgccac atttccttca atcgaccatc tgggcggttt ggacgttcag gatgcagatg
    10201 gcaaaacggt tcaccacatt cctgccgttc agggtaagct cggttcgctc aagttgtaca
    10261 acgctttggc agaacgtttt gacggaaaat tggacaaaga agcggcagaa cagggtttga
    10321 tatggtttgc cgaacacgtt gccgacgcgc gcgcccatcc cggcaagcat cccaatatcg
    10381 acctgcttga aaaagttgtg caaagcggcg aaaccttgct gctcaagccg cttgccgcgc
    10441 aataattttc gaccatgccg tctgaaatcc gtttcagacg gcattttgtc ggaaagaaga
    10501 ccgtaaaacg ggcattttct tttctatttc aggatacggg caatgatgtt tcaacacaca
    10561 ggacgacaca taaagcgttg ccctatgtgt tgccctaatt tggaaggggt tacacccctc
    10621 tcaaataaaa tctgatgctg ctgccacgaa ggacggatgt ccgagtggcg gagtttcaac
    10681 cattaaggaa atacgatgaa aaaaatgttc ctttctgccg tattgcttct gtcggctgcc
    10741 gcccaaaccg tgtgggcgga tacggtgttt ccctgtaaaa cggacaacaa caaatatata
    10801 gaagttcaaa aaatcaaccg caatctttac gaatattcgt tcggcagtgc ggcaaaaaaa
    10861 gaaattgcca tacgcaacag caaagctgac ctgttggggc gttccgacag gtggcaaggc
    10921 atgggtagcg gacgccgggc aacgatgaaa ttccaaaacg gcgaatttat gtacaccata
    10981 tggacaggct tcgattccgt gactcatacg gaaagcagcg gtgtcgttgt ggagcgtagg
    11041 ggcaaggaag tcgcacgggt cggctgtacg ccgaaaaccg cgcaggcgaa tttcaacgat
    11101 gacgattttt cctagtaatc ggggcggata aggcgatgga aacagcgaaa cccgtcatgc
    11161 tgattgtccg tccgtcgggc agggccgcag aagatgtcga aacttgcctg aatgccggtt
    11221 ggcgcgcgga agtgttgagc ccgattgaaa tcgaagcaga tgctgccgga ctggaacttt
    11281 tgtccgaaca atatgcccgt gcggatgccg tgttttgggt cagtccgacc gccgttgaaa
    11341 ccgccgtccc gtaccttaac ctttcagacg gcataaaggc gcagattgcc gtagggcagg
    11401 gcagccgccg cgcattggaa cgctgtttgg tcagaacggt catcgcgcct gatgacggca
    11461 acgacagcga ggcggttttg cgcctgccgg tttggaacag tctgcccgaa ggtgcgcgcg
    11521 tattgtttgt gcgcggacac ggcgggcggg attttttgat gaatgccttg caggagaaag
    11581 gttttcggac ggaggtggca gaagtctatt tcagacggca taaacctttg aactttcaaa
    11641 atttccaaac cgaaaatatt gccgccgcct atattacgtc gaccgagctg gtgcgcttgc
    11701 tgttcgggca gcttccgccg caattttccc gattcttcaa atccttgcta tactttaccc
    11761 atcatccgcg cattgcggag gcattgaagc gcgaaggcgt gtgttcggtc gaaaccgtcc
    11821 ctacgctgga agccgcgctt tcccattctt ccatttccgt ttcagacggc atggtctttc
    11881 ccggaacctc aaattaataa ggagcaaaac ggtgggcgaa cctgaaaaca aatcatccga
    11941 acccgtacgc gagatacagg catcaaaaga aatgccgtct gaaacctctt ccccacgcaa
    12001 agaaaacgaa acagaagtac acattcctgc cgctcctttt atcgtcaaac agtccggcag
    12061 caacgctttg gcaacctgcg ccttggtatt ggcggcattg ggtttgggcg caagtggttt
    12121 tttgtttgtc caaggacaga atgtcttgaa aaaccaagag ctggcattca accaaaaaat
    12181 cgacaaagcc gccttgggcg agtcggaaaa cgccgccctg ctcaaagaca acctcaaccg
    12241 ccaaagtgcc atacagtccg aactcgaccg tttggacagc ggtgtcaaag ccaacggcga
    12301 acagattctg atgacgcaaa aatcctatcg cgagttgacc aaaggacgcg ccgattggct
    12361 ggtggacgaa accgagacca tactcaatct ggcagcgcaa cagctggtgt tgaccggcaa
    12421 tatccaaacg gcagtcggcg tgttggagca tatcgacagc cgcctgtccc gtttcgatca
    12481 ggcggagctc ctgccgctca agcaggcaat cagcagcgac ttggcggaac tgaaaaaccg
    12541 tccttatgtc gatatttccg gcacggcact gcgcatcgac aggctggaaa ccgccgtatc
    12601 cggactgccg ttgatgctcg acggcgtgct gaaaccgggc gtacaggccc gcaacgaagc
    12661 cgtttccgct tcatggtgga acgtatggga aaaatccctc ggcacattga aagggctggt
    12721 tgaaatccgc cgtttggaaa acaacgatgc catgctgatt tctcccgaac aggcatattt
    12781 tgtacgcgaa aatctgcgcc tccgcctttt ggatgcgcgg actgcattaa tgcagcgcaa
    12841 cagcgaagtc tatcaaagcg atttgaacaa tgccgaaacc gccgtcagac agtattttga
    12901 tgccaaatcc cccgccacgc agtcgtggtt gaaggaattg gcggaattga aggcgttgga
    12961 tgtgcgcatg acggcggatg acggtttgaa ggccagttta aatgccgtcc gcgcctatcg
    13021 cgacggtacg cgcatgacgg cggcggaaaa tcaagaagca gaacaggcgg cttccgaacc
    13081 ggcaaacgaa aagacagctt ccgaatcggc tgccgcatcg gatgtgaaga ccatagaagc
    13141 accgtccctg ccttcggaac ttaaaccgga acagcctgca aaaaaacaga ccgtaccgga
    13201 aaaggcaggg cgttcgccgt ccgctaaagg agaacgcgca tgaaaacggt agtctggatc
    13261 gtcatcctgt ttgccgccgc cgtcgggctg gcattggctt tgggcattta caccggcgac
    13321 gtgtatatcg tactcggaca gaccatgctc agaatcaacc tgcacgcctt tgtactgggg
    13381 ctgctgattg ccgtcgtggt gtggtatttc ctgtttaaat tcgtcatcgg cattttgaat
    13441 attcccgaaa agatgcagcg tttcagtttg gcacgaaaag gacgcaaggc cgcgctttac
    13501 ttgaacaaag cgggtttggc gtattttgaa gggcgttttg aaaaggcgga actcgaagcc
    13561 tcgcgcgtgt tgggcaacaa agaggccgga gacaaccgga ctttggcatt gatgctgggc
    13621 gcgcacgccg caggacagat gggaaatacc gaattacgcg accggtacct tgcagaaatt
    13681 gcaaagctgc ctgaaaaaca gcagctttca cgctacctcc tgctggcgga atcggcactg
    13741 aatcgccggg actacgaaac ggtggaagcc aatcttcatg cggcagccaa aatgaatgcc
    13801 ggactgacac ggcttgtgcg cctgcaattg cgctatgcct tcgagagagg agacgcgctt
    13861 gaggtgttgg caaaaaccga aaaactttcc aaggctggtg cgttgggtga atccgaaacg
    13921 aaacagtatc aaaattgggc ataccgccgc cagctggcgg atgctgccga tgccgccgct
    13981 ttgaaaacct gcctgaagcg gattcccgac agcctcaaaa acggggaatt gagcgtatcg
    14041 gttgcggaaa agtacgaacg tttgggactg tatgccgatg cggtcaaatg ggtcaaacag
    14101 cattatccgc acaaccgccg acccgaactt ttggaagcct ttgtcgaaag cgtgcgcttt
    14161 ttgggcgaac gcgatcagca gaaagccatc gattttgccg atgcttggct gaaagaacag
    14221 cccgataacg cgcttctgct gatgtatctc ggtcggctcg cctacggccg caaactttgg
    14281 ggcaaggcaa aaggctacct tgaagcgagc attgcattaa agccgagtat ttccgcgcgt
    14341 ttggttctgg caaaggtttt tgacgaaacc ggagaaccgc agaaggcgga ggcgcagcgc
    14401 aacttggttt tggcaagcgt tgccgaggaa aaccgccctt ccgccgaaac ctgttgaaac
    14461 cttcagacgg catcgttgaa atgccgtctg aaaaccattt cacttgacaa acagactgac
    14521 agaaaacccg catgactctt ttaaaaaacg atactttcct ccgcgccctg ctcaaacagc
    14581 ccgtcgaata cacgccgatt tggatgatgc gtcaggcggg gcgttatctg cccgaataca
    14641 aagccacacg cgcgaaagcg ggcagcttcc tcgatttgtg caaaaacacc gaattggcga
    14701 ccgaagttac catccaacct ttggaacgct tcgatttgga cgcggcgatt ttgttttccg
    14761 acatcctgac cgtccccgac gcaatgggct tgggactgta ttttgccgaa ggcgaaggcc
    14821 cgaaattcaa acgcgccctg caacacgaag ccgatatcgc caagctgcac gttcccgaca
    14881 tggaaaaact gcaatacgtt ttcgacgcgg taacttccat ccgcaaagca ttggacggcc
    14941 gcgtaccgct catcggcttc tccggcagcc cgtttacgct cgcctgctac atggtcgaag
    15001 gcggcggcag caaagaattc cgcaccatca aaaccatgat gtattcgcgc cctgatttgc
    15061 tgcacaaaat cctcgacacc aacgcccaag ccgttaccgc ctacctcaac gcccaaatcg
    15121 acgcgggcgc acaggctgtg cagattttcg acacttgggg cggcgtgttg agcgacgcgg
    15181 cgtttaaaga attcagcctc aaatacatcc gccaaatcgt tgccggactg aaacgcgaaa
    15241 gcgaaggtcg ccgcgtgcct gttatcgtat ttgccaaagg cggcgggctg tggctggaaa
    15301 gcatggcaga aatcggcgca gacgcattgg gcttggactg gacgtgcaac atcggcgaag
    15361 cacgccgccg cgtcggcaag caagtcgccc tgcaaggcaa cttcgacccg tttgccctct
    15421 tcggtacgcc cgaatccatc cgcaccgaag ccgcacgtat cctggccgac tacggacaag
    15481 gcagcggtca tgtcttcaac ctcggacacg gcatcaacca gcacgccgat cccgaacacg
    15541 ccaaaatctt agtcgatacc gtacacgaat tgtcgcggca ttatcacggt gggtaagccg
    15601 gcaggaaacc gcccgatatg ccgtctgaag ccgagagatg gccggttggg gtaaaaataa
    15661 ggcaatgcgg caatatccgc cgtgtacgga tagtacatga cggcggcgtt gccgcattgg
    15721 cgcaatccca accgtcccta ttttcagacg gcatttttgt tttcagatgc agggaaaacc
    15781 gatggcaaaa acgcttaaaa ccctttacca atgcaccgaa tgcggcggca cttccccgaa
    15841 atggcagggc aaatgcccgc attgcggcga gtggaacaca cttcaggaaa gcttagccgc
    15901 gcccgagccg aaaaacgccc gtttccaatc ttgggcggcg gatacctcga ccgtccagtc
    15961 cctctccgcc gtgaccgcca ccgaagtgcc gcgcaatccg accggtatgg gcgaactcga
    16021 ccgcgtattg ggtggcggtt tggtcgatgg cgcggtcatc ctgctcggcg gcgatcccgg
    16081 catcggcaaa tccacgctgc tgttgcaaac catcgccaaa atggcgcaaa gccgcaaagt
    16141 gctgtacgtt tccggcgagg aatccgccca acaggtcgcc ttgcgcgcgc aacgtttgga
    16201 actgcccacc gaaggcgtga acctgcttgc cgaaatccgc atggaagcca ttcagacggc
    16261 cttgaaacag catcagcccg aagtcgtggt tatcgattcc atccaaacca tgtattccga
    16321 ccaaatcact tccgcccccg gctccgtgtc gcaggtgcgc gagtgtgcag cccaactgac
    16381 gcgcatggcg aaacagatgg gcatcgccat gatactggtc ggacacgtga ccaaagacgg
    16441 cgcgattgcc ggcccgcgcg tgctggaaca catggttgat accgtgctgt atttcgaggg
    16501 cgaccaacat tccaactacc gcatgatacg cgccatcaaa aaccgcttcg gcgcggcaaa
    16561 cgaactgggc gtgttcgcga tgacggaaaa cggtttgaaa ggtgtgtcca acccgtccgc
    16621 catcttcctt gccagctacc gcgacgacac gcccggttcg tgcgttttgg ttacgcagga
    16681 aggcagccgc ccgcttttgg ttgaaattca ggcattggtc gatgacgcgc acggcttcac
    16741 gcccaaacgc cttaccgtcg gactggaaca aaaccgcctt gcgatgctgc tcgccgtcct
    16801 caaccgccac ggcggcattg cctgtttcga ccaagacgtg tttctcaatg ccgtcggcgg
    16861 cgtcaaaatt ggcgaacccg ccgccgacct tgccgtcatc cttgccatgc tctccagctt
    16921 ccgcaaccgc cccatgcccg aaaaaaccgt ggttttcggc gaaatcggct taagcggcga
    16981 agtccgcccc gtcgcacgcg gacaagagcg gctcaaagag gcggaaaagc tcggctttaa
    17041 acgcgccatc gtcccaaaag ccaatatgcc gcgcaacgcc aaagagtttc cgaacctgaa
    17101 aatctacggc gtttcgagtt tgcaggaagc catcgatatt tgtcgggaag atagggattg
    17161 aaaggaaatg ccgtctgaag gttcagacgg catttggttt gtggcggatt gaaaacaaga
    17221 aggcataccg gcgacagata agatttgtgg caaagttacc tgtgatatgg caaaaacaca
    17281 cacgcccgtc atccccgcaa gggtgggaat ctggagtcgt ccgtttcggc aatgattgaa
    17341 aatcacggta acccaaccgc ttggattccc gacttcgtgg gaatgagggg cgtgtgtgtt
    17401 tgatttccat ccgccatatg tcggcgacgg gcttattcgc ctacggtttt ttgtatcagt
    17461 ttttcggcgt ttgccaaagt gtttgccact tcgtcaaaac cgatgcggct gccggcgatg
    17521 agggcgcgcg tatcggtata ggcggcgcgt actttgccgt ctgtttcggt aacgaggacg
    17581 cgcaggggca gttgcagggc gaaggcgggg tctttgacca tcagcggcgt gccggctttg
    17641 ggcgtgccga agacgatgac ttttgccggc tgcatcgtta agccgtttcg gtgggcggct
    17701 tcctgatggt cgatgacggc aaaaatgtcc atccctttgc tttttatggc ggtttcaagg
    17761 cggctgacgg tttcgtcaaa actgtatttt gaggtgaggg tatgcgtggt catagcggtt
    17821 tcgttttggg tggacggttc gccggcagga tgtgccgaag cggttgaaat gcagagtgcg
    17881 gatgcggcaa tcagggggag tatgtgtttc atcgtatttc cttatcggtt tgtttatcag
    17941 gcttcggacg gggcggcacg cgccgcgccc gatgttgcgc cgcgtgccgg aacgccgtat
    18001 gccgtctgaa agcctgtcct ttcagacggc attgcgtcat ttcatccctt ttttgagcag
    18061 gtcttcataa ccgccgtgat tggcaacatt tgtataacct gcttttttca gctcttgaag
    18121 ggcggcttcg gcacgccgtc cgctgcggca gtagaggttg accggcgtgt ctttgtcggg
    18181 cgcggcttcg tgtatgcggc ggacgatttg gtcgacgggg atgttgaccg cgttgtgcaa
    18241 atgcccttcg ctaaattcct gttcggaacg gacatcgatc caaacggccg gatgttgcgc
    18301 ggtttgggcg gcggataggg gtttttgcgg ggctgcctgc gcggcaaagg cggctgaggc
    18361 aatgagtgcg gcggtaatca ggtgtttgat attcataggg ttctcctgcg gttgtcgttt
    18421 taagggacgg gaagttattt tatctgttcc aaagcggcgg catctatgtc ccaacgccaa
    18481 acgccgccgc ctttgccatc caatccgcgc aaaaacaggt agcggacgga aacggcggcg
    18541 ggcggttgtc cgcgcagttt gaagtagcgt gcggcggcaa cggcgtaaat cagcgcctga
    18601 aggtaatagt ggtggtgcgc gacggcttcg tccatcgcct gccgcgtgta ggcggatgcg
    18661 tccgcgccga gatggtttga tttgtagtcg atgacgcaga tattgccgtc ggggtcttgg
    18721 cagaccatat cgataaagcc gtttaaaaag ccgttgacgg tgtggaagtc gagcgtttcg
    18781 gcggcggcac ggcagacttc gggcagcctg atgtcgtcgc gggcaaacca gtcgcgcagc
    18841 cgtttgaggc cgaagtcttc ggtgtggagg gtaaagccca tttcgggaca gcggcactcg
    18901 ggcgggatgt cggacaggca gtatgccccc gtcagcggcg ttttctggca ggcttccgcc
    18961 atttcggcaa cggcgggcag ccatatttct tcaaatccgt attttttcag cttgtcggtg
    19021 atgagggttt cctgtccggc ggctgcttgt ccgaatttga aatcttcaag aatttcgtgc
    19081 aggcacagcc ccgcctgcgt gcctttcgga aagtcgtgta tcgatatgcc gtctgaagcc
    19141 gtcggcgttt cagacggcat cgccgctacc gaggtttcgg cggcatccaa ggacgggcag
    19201 gcatcttctt cgccgccgtc gggcgtttgg gtatggcggc ttaaggcggt gaagctggtg
    19261 tggcggacaa atcggaatcc gcgttcggga atgctgtttg cggcaaattc ggcggtttga
    19321 ccggcgttgc cgcgatatac ggcaggcggc ggcgcatctt ctgtgaaggc gaaatccgtg
    19381 ccggacgggg cgttgtccgc caaacgccgc cagttgcgtt tgagcatcgc gatgccgtct
    19441 ttttcacacg cataggcacg gcggacggtt tcgcggctgt cttgcggcaa gccttcgatc
    19501 aggtaggcga gggggttgtc ggcggtatcg gaagaatagg cggcgtagat gttgagctgt
    19561 tcctctgcac gcgtcagcgc gacataaagc aggcgcaggc gttccgccat ttcttcgtcg
    19621 gcgtattgct tctgttcgtc ttccgacagt tgcgcctttg ccaacagttc ggttcggttg
    19681 gcgctttggt ggaggatttg ccagtcggac ggtccggtat cttgcgcgtc ccacgcaaac
    19741 gggcagtaca ccagcggata ctgcaaacct ttcgaggcgt gcatggtaac gattttgacc
    19801 aaatcttcgt cgctttccag acggatggcg cggttgtcgt tgctgttgtt ttcggccagg
    19861 ctgatttggt cgcgcaacca tttgtgcagc gcggcggggt tgcggttttg ggcgtcttcg
    19921 gcggcaagca gttcgagcag ttggaaataa ttggtcaggc tgcgcccgtt gttccggctt
    19981 aagaggcgcg tttcgatgcc gtgtgtttgg gaaaattgct gcatggcggc gaaaatgccg
    20041 tattgattcc agttgtcgag cgcggttcgg gcagattccg cccaatgcaa aatctcgctt
    20101 tcgttttggt tgaagtcgtg caattgctgc gcgtcataac cgaatatgcc gcttgtcagg
    20161 acaaagcgca gcgttccggc gcggcgcggt tcgagccaga agccgatgag tgcggacagg
    20221 gcggcggctt cgggcgaggc gaacacggat tcgcgcgaaa gcaggacgct ttgcacctgc
    20281 cgttttttca gggcggcgga aaccatcacc gcctcgttgt gcgtgcgtac cagcacggca
    20341 atatcgcccg actgcaacgg gcagcctttg aaattcagac ggcctccggc ggcttcgttg
    20401 agcgcgtggg cgatttcgtc ggcgcaatag tcggcggcac ggcggcgcaa aacgtctttg
    20461 ttggcttttt cattgtcgtt ttcgtgcagc caacgaacct gtacggcagg acgtttgggc
    20521 gacaacctgc tttcggcacg cgccgcaccg acttccgaat agccgatgtt ttccaaaacg
    20581 aacgggcgtt ctttgaggcg gaacagcgcg cctatgctgc cgataagcgc ggcgtggctg
    20641 cggtagttgg tggcgagcgt gtagcggtgc cgcgcatctt ccgccgcctg aaggtaggcg
    20701 taaatgtccg ctccgcgaaa gctgtaaatc gcctgtttgg gatcgccgac gaggaacagc
    20761 ggtcggtttt gggcgatgaa gattttttgg aagatttcgt attgcagcgg gtcggtgtct
    20821 tggaactcgt cgatcagcgc ggtttcccag ttttcggcaa cggcgcgggc gagggtttcg
    20881 gcgtgcggat tgtcggtcag cgcggtgtgg acatcgagca gcaggtcgtc gaaaccgcgt
    20941 tcgcggcgcg attttttcat ctcggcaagg ctgcggttga ggtattcgat taaatccagt
    21001 tgcagccgga tcattgttgc ttcttccgct tcttcgagtg cgttcaaatc gcgcccgaag
    21061 tctgccagtt tctgcaattc ggcaaatact gccgcatcgg gcgttttgcc ttttttcagt
    21121 ccggcttcga gtttgtcgga tgcaagtttc aagagtctgt cgtgcgtgtc tttgtccaga
    21181 aagggcagtt gtccggcggc ggatttttgt gccagttctt taaaaaggtt gccgaagctg
    21241 tttttgcggt aactgttgcc gttgaggtcg ggatggatgc gccaaaagcc ggcttccagc
    21301 tcgggcagca ggcggcagac ggtttgccat gaggtttcgg cgttgtgctg cgcctgtttc
    21361 aaatctgcct gcggacggcg gaaattcagg tacgggcggg acaggtaggc gcggatttgg
    21421 gcaaggacgg tttgcggcac agctttgcgt ttaaacgcca atgcggcaag caccggatca
    21481 ttgctgacgc gttcccgcca aaaatcttgc gccgggataa gcaggcggtc gccgtcttct
    21541 tcggtcagtt cgacatcgaa cggtgcttgg cacaagaagg cgtagtcgcg caggatacgt
    21601 tggcagaagc cgtggatggt atagatggcg gcgttgtcga attgcccgat ggcggccttg
    21661 aggcggacaa tcagacgcgt ccggccctct ttttgcaaag cctgttttaa gagtgcgggc
    21721 aggaaggtgt cgcctttgtg gtgttccgca caataggcgg cgatgccgtc tgaaagcgtg
    21781 tcgtctccaa gtttggcaat ttctttactt tctaaaacct gcaacacatc gtccaaacgt
    21841 gcgcgcaggc gtgttttcaa ctcggcggtg gcggctttgg tgaaggtaac gaccaatacg
    21901 cgctcgacgt ttttttgttc taatacgatc aggcgcgtaa acagggcggc aatgccgtag
    21961 gttttgccgg tgccggcaga ggcctcaatc aggttggtgc cggcaatggg gacggttagc
    22021 gagtcgaatg cttggatggg tgcagacata gtgcgcgctc ggaaaacggt tggacggtat
    22081 agtggattaa caaaaatcag gacaaggcga cgaagccgca gacagt
//
LOCUS       DAXHPV010000019        21567 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.019, whole genome shotgun sequence.
ACCESSION   DAXHPV010000019 DAXHPV010000000
VERSION     DAXHPV010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 21567)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21567)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21567
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.019"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..963
                     /gene="murB"
                     /locus_tag="ACFM6C_000502"
     CDS             <1..963
                     /gene="murB"
                     /locus_tag="ACFM6C_000502"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HFC6158003.1"
                     /translation="ALEHADGLRDIVRLPEFNRDTVLWLGGGSNILLMEDYAGLVVHM
                     ENKGIREIARSDGMVLIEAQAGEIWHDFVLHAVALGLNGLENLSLIPGTVGASPVQNI
                     GAYGVEAKDVIHSVRCFDLDTETFVTLSNADCRFAYRESLFKQEGKGRYVIVSVVFAL
                     KTHFVPNLGYGDLAAAVAELSAGRVPTAKDVSDAVCAIRNSKLPNPNVLGNVGSFFKN
                     PVVSAEKAATLLQRHPDMPRYPQPDGSVKLAAGWLIDQCRLKGFQIGGAAVHDRQALV
                     LVNKNNASANDVRQLAQHIKFTVFARFQVELHAEPNWLPASFSL"
     gene            975..1625
                     /locus_tag="ACFM6C_000503"
     CDS             975..1625
                     /locus_tag="ACFM6C_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HFC6158004.1"
                     /translation="MPVTRPAKINTYTRIIDASLALFNEEGERNISTNHIAAHLGISP
                     GNLYYHFRNKDEIIVQLFKRYSEALLEYLNEAVLPSDVEDSINYMAGIYDVMWEYRFL
                     FSDVNTLLARSAELLGEHNTFTQAKVSPLLVNLLTQLNGLNIIQADQTAMNDLAVNMW
                     MITKYWFDFDSSLRGRTKLTEDSKARGIRRTLSLLRPYLLPEHREKYDRKIGNGNP"
     gene            1680..2456
                     /locus_tag="ACFM6C_000504"
     CDS             1680..2456
                     /locus_tag="ACFM6C_000504"
                     /EC_number="1.1.1.290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HFC6158005.1"
                     /translation="MRAVPPPHISITGLGYLGLPLAQKFYQHGSRVAAIKRSLTSDDI
                     NLPIHLDTFDLGSTDAFQTALWRHHADKPVWFFLLPPSSLTHYADTVKQWAELARACN
                     VQHLIFTSSTSVYGDTARECDETATPDPQTESARQILAAEQHLLDSGISNIDILRLGG
                     LYCAERHPVSRLVQKQNIPGGNRPINIVHRNIAVESLFQTAFNPGGRRLKNIIEPRHP
                     TRREFYTEEAAKLGLPAPDFAPDDSMGKIIRTVCDNSLSL"
     gene            2507..3073
                     /locus_tag="ACFM6C_000505"
     CDS             2507..3073
                     /locus_tag="ACFM6C_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032934 - sterol binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 domain-containing protein"
                     /protein_id="HFC6158006.1"
                     /translation="MSALLPIINRLILQSPDSRSELAAFAGKTLTLNIAGLKLAGRIT
                     EDGLLSAGNGFADTEITFRNSAVQKILQGGEPGAGDIGLEGDLILGIAVLSLLGSLRS
                     RASDELARIFGTQADIGSRAADIGHGIKQIGRNIAEQIGGFSRESESANIGNEALADC
                     LDEISRLRDGVERLNERLDRLERDIWID"
     gene            3093..3983
                     /locus_tag="ACFM6C_000506"
     CDS             3093..3983
                     /locus_tag="ACFM6C_000506"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003951 - NAD+ kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006741 - NADP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HFC6158007.1"
                     /translation="MNSPFHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGI
                     KEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDGTFLSVAREIALRAVPIIGINQGH
                     LGFLTQIPREYMTDKLLPVLEGKYLAEERILIEAALIREGKTAERAIALNDAVLSRGG
                     AGQMIEFEVFVNREFVYTQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPICP
                     QSMTNRPIAIPDTSEIEILVTQGGDARVHFDGQTHIDVQNLDRITIRRYRNPLRILHP
                     TDYQYFKTLRQKLHWGEQLV"
     gene            4008..4766
                     /locus_tag="ACFM6C_000507"
     CDS             4008..4766
                     /locus_tag="ACFM6C_000507"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HFC6158008.1"
                     /translation="MNPKISSDHTEDAVRLSKRMAQLGLCSRREADGYIEQGWVTVNG
                     KTAVLGQKVSPADRIELNKKAHEQQAARITILLNKPVGYVSAQAEKGYKSAAELITPE
                     NRWEGDTSRIRFDPKHKIGLAPAGRLDIDSVGLLVLTQDGRIAKQLIGENSGSEKEYL
                     VRVRGKLDEKGLALLNHGLSLDGEKLRPAQVEWQNEDQLRFVLKQGKKRQIRRMCELV
                     GLRVVGLKRIRMGKVKLGRLPPGKWRYLAPGESF"
     gene            complement(4821..5486)
                     /locus_tag="ACFM6C_000508"
     CDS             complement(4821..5486)
                     /locus_tag="ACFM6C_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HFC6158009.1"
                     /translation="MAVLSKEQVLSAFKNRKSCRHYDAARKISAEDFQFILELGRLSP
                     SSVGSEPWQFVVVQNPEIRQAIKPFSWGMADALDTASHLVVFLAKKNARFDSPFMLES
                     LKRRGVTEPDAMAKSLARYQAFQADDIKILDDSRALFDWCCRQTYIALGNMMTGAAMA
                     GIDSCPVEGFNYADMERVLSGQFGLFDAAEWGVSVAATFGYRVQEIATKARRPLEETV
                     IWA"
     gene            complement(5600..6373)
                     /gene="folE2"
                     /locus_tag="ACFM6C_000509"
     CDS             complement(5600..6373)
                     /gene="folE2"
                     /locus_tag="ACFM6C_000509"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003933 - GTP cyclohydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase FolE2"
                     /protein_id="HFC6158010.1"
                     /translation="MNTIADVQSSRDLRNLPINQVGIKDLRFPITLQTAEGIQSTIAR
                     LTMTVYLPAEQKGTHMSRFVALMEQHAEALDFAQLRKLTTEMVALLDSRAGKISVSFP
                     FFRKKTAPVSGIRSLLDYDVCLTGEIKDGAYGHSMKVMIPVTSLCPCSKEISQYGAHN
                     QRSHVTVSLTADAEVGIEEVIDYVEAQASCQLYGLLKRPDEKYVTEKAYENPKFVEDM
                     VRDVATSLIADKRIKSFVVESENFESIHNHSAYAYIAYP"
     gene            6565..7722
                     /locus_tag="ACFM6C_000510"
     CDS             6565..7722
                     /locus_tag="ACFM6C_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aspartate aminotransferase family
                     protein"
                     /protein_id="HFC6158011.1"
                     /translation="MKFATKAIHSSYDCDKHNRALMPPIYQNSMFALHEIGENVPYRY
                     SRLSNPTRQILEDTVADLEHGAAGFAFSSGMAGIDAVWRTFLRPGDTIVAVADIYGGA
                     YDLLVDVYQKWGVNVVFADLGNPDNLDELLKAHKVKLVWLETPSNPLLRLVDIKVLAA
                     KAKAAGALVGIDNTFATPYLQQPLDMGCDFVFHSATKYLCGHSDVLMGIVVAKTKELA
                     QPLHDMMVHTGAVAGPLDCWLVLRGIKTLALRMNAHCQNALEIARRLEAHPAIEKVFH
                     PGLPSHEHYELAKTQMPKGIGGVVTVYLKNDTREAANSVIKNMKLVKMASSIGGVESL
                     VNHCYSQSHSGVPHDVKMEMGIKVGLLRFSIGIEDADDIWNDISAALDTTL"
     gene            complement(7785..8786)
                     /gene="hemB"
                     /locus_tag="ACFM6C_000511"
     CDS             complement(7785..8786)
                     /gene="hemB"
                     /locus_tag="ACFM6C_000511"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HFC6158012.1"
                     /translation="MQFPYRNVPASRMRRMRRDDFSRRLMREHTLTADDLIYPVFVLE
                     GSAREEDVPSMPGVKRQSLDRLLFTAEEASNLGIPMLALFPVVTANKTECAQEAYNPE
                     GLVPTAVRALRERFPELGIMTDVALDPYTVHGQDGLTDENGYVMNDETVEVLVKQALC
                     HAEAGAQVVAPSDMMDGRIGTIREALEDTGHIHTRIMAYSAKYASAFYGPFRDAVGSS
                     GNLGKADKKTYQMDPANTDEALNEVALDIREGADMVMVKPGLPYLDVVRRVKDEFGVP
                     TYAYQVSGEYAMLQAAIANGWLDGGKVVLESLLAFKRAGADGILTYYAIEAAKMLKR"
     gene            complement(8969..9253)
                     /gene="yhbY"
                     /locus_tag="ACFM6C_000512"
     CDS             complement(8969..9253)
                     /gene="yhbY"
                     /locus_tag="ACFM6C_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HFC6158013.1"
                     /translation="MTDTKLNTKEILELKARAHHLHPVVMVGQQGLTDAVIKETDAAL
                     TAHELIKVRVFGDDRAERIEICTALCEAVDAQPVQHIGKLLVLWRKNIEA"
     gene            9363..9983
                     /locus_tag="ACFM6C_000513"
     CDS             9363..9983
                     /locus_tag="ACFM6C_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RlmE family RNA methyltransferase"
                     /protein_id="HFC6158014.1"
                     /translation="MAVRSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINDKD
                     KLIKPGTVLADLGSAPGSWSQVAAKLTGTSGAVFALDILPMEAIGGVSFIQGDFREND
                     VLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFL
                     VKVFQGAGYQEYMAAMREIFGTVQTRKPEASRNRSSEIYLLGKNKR"
     gene            10047..12014
                     /gene="ftsH"
                     /locus_tag="ACFM6C_000514"
     CDS             10047..12014
                     /gene="ftsH"
                     /locus_tag="ACFM6C_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HFC6158015.1"
                     /translation="MGNTFKSILVWVALGIGLMAAFNALDGKKEDNGQIEYSQFIQQV
                     NNGEVSGVNIEGSVVSGYLIKGERTDKSTFFTNAPLDDNLIKTLLDKNVRVKVTPEEK
                     PSALAALFYSLLPVLLLIGAWFYFMRMQTGGGGKGGAFSFGKSRARLLDKDANKVTFA
                     DVAGCDEAKEEVQEIVDYLKAPNRYQSLGGRVPRGILLAGSPGTGKTLLAKAIAGEAG
                     VPFFSISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGN
                     DEREQTLNQLLVEMDGFESNQTVIVIAATNRPDVLDPALQRPGRFDRQVVVPLPDIRG
                     REQILNVHSKKVPLDKSVDLLSLARGTPGFSGADLANLVNEAALFAGRRNKVKVDQSD
                     FEDAKDKIYMGPERRSMVMHEDEKRATAYHESGHAIVAESLPFTDPVHKVTIMPRGRA
                     LGLTWQLPERDRISMYKDQMLSQLSILFGGRIAEDIFVGRISTGASNDFERATQMARE
                     MVTRYGMSDKMGVMVYAENEGEVFLGRSVTRSQNISEKTQQDIDAEIRRILDEQYQVA
                     YKILDENRDKMETMCKALMEWETIDRDQVLEIMAGKQPSPPKDYSHNLRENADAAEDN
                     APHAPTREETEAPAPADTASTESEQQPENKA"
     gene            12236..12667
                     /locus_tag="ACFM6C_000515"
     CDS             12236..12667
                     /locus_tag="ACFM6C_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HFC6158016.1"
                     /translation="MKKVEKNILVLHGADKMFELVDKVEDYPHFLPWYSKTEVIGRSG
                     NELKARLFMDYMHVRQSFATHNRNIPGREIRMELLEGPFKTLRGTWKFIDLGDDMCKI
                     EFNLEYDFSNAVLSALISPVFNHLSATLVEAFVKEADRRYA"
     gene            12660..12938
                     /locus_tag="ACFM6C_000516"
     CDS             12660..12938
                     /locus_tag="ACFM6C_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HFC6158017.1"
                     /translation="MLEIEIVYGLPDRQVLKTMQLAEGTTVRAAALQSGLDGIFEDLN
                     LHSAPLGIFGKAVKDDTPLRDGDRIEVYRPLLIDPKEARRKRVQNQEE"
     gene            12991..13569
                     /gene="pth"
                     /locus_tag="ACFM6C_000517"
     CDS             12991..13569
                     /gene="pth"
                     /locus_tag="ACFM6C_000517"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HFC6158018.1"
                     /translation="MSNKIKMVVGLGNPGKEYEQTRHNAGFWFLDELAWKWKASFKEE
                     KKFFGEVARAALPDGDVWLLKPATFMNRSGQAVAALAQFYKIKPEEILVVHDELDIPC
                     GRIKFKLGGGNGGHNGLKDIQAKLGTADYYRLRLGIGHPGDRNLVVGYVLNKPSTEHR
                     RQIDDAVAKSLQAIPDILAGKWEEATRFLHSK"
     gene            13630..13836
                     /locus_tag="ACFM6C_000518"
     CDS             13630..13836
                     /locus_tag="ACFM6C_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dioxygenase"
                     /protein_id="HFC6158019.1"
                     /translation="MTELKQLIQTESIPVIEETLDFLLYECSIDDAPSAEEVAQWRDI
                     LAARGGKFLRLSKICQTWLDEEAA"
     gene            13833..14195
                     /locus_tag="ACFM6C_000519"
     CDS             13833..14195
                     /locus_tag="ACFM6C_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HFC6158020.1"
                     /translation="MKLPRNRFSLLSALWFAGGIYSLLFKAADTAPPPFPHFDKAAHL
                     ALFFAQIWLLTKAFKTGKLPIPYRSLMVFALCFALFSECAQAWFTATRTGSLGDVLAD
                     MAGTVLALFAARAADRPD"
     gene            14426..15841
                     /locus_tag="ACFM6C_000520"
     CDS             14426..15841
                     /locus_tag="ACFM6C_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008509 - monoatomic anion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006820 - monoatomic anion transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HFC6158021.1"
                     /translation="MNLHAKDKTQHPENVELLSAQKPITDFKGLLTTIISAVVCFGIY
                     HILPYSPDANKGIALLIFVAALWFTEAVHITVTALMIPILAVVLGFPDMDIKKAMADF
                     SNPIIYIFFGGFALATALHMQRLDRKIAVSLLRLSRGSMKAAVLMLFLVTAFLSMWIS
                     NTATAAMMLPLAMGMLSHLDREKERKTYVFVLLGIAYCASIGGLGTLVGSPPNLIAAK
                     ALNLDFVGWMKLGLPMMLLILPLMLLSLYVILKPNLNERVEIKAESIPWTLHRVIALL
                     IFLATAAAWIFSSKIKTAFGISNPDTVIALSAAVAVVVFGVAQWKEVARNTDWGVLML
                     FGGGISLSTLLKTSGASEALGQQVAATFSSAPAFLVILIVAAFIIFLTEFTSNTASAA
                     LLVPIFSGIAMQMGLPEQVLVFVIGIGASCAFMLPVATPPNAIVFGTGLIKQREMMNV
                     GILLNILCVVLVALWAYAVLM"
     gene            15960..16469
                     /locus_tag="ACFM6C_000521"
     CDS             15960..16469
                     /locus_tag="ACFM6C_000521"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFC6158022.1"
                     /translation="MIILHTNKGDIKIELDFDKAPVTAKNFEQYVKDGFYDGVIFHRV
                     IKGFMIQGGGMDENMNEKETRDPIQNEASNGLPNDKYTIAMARTSDPHSASAQFFINT
                     ADNAFLNFRSKELYGKTVVQDWGYAVFGKVVDGFDVVDAIEGVSTKRHGYHDDVPSEP
                     VVIIKAEAV"
     gene            16632..18014
                     /locus_tag="ACFM6C_000522"
     CDS             16632..18014
                     /locus_tag="ACFM6C_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HFC6158023.1"
                     /translation="MANIARDIFKAYDIRGIVGKTLTDDAAYLIGRAIAAKAAEKGMT
                     RIALGRDGRLSGPELMEHIQRGFTDSGIGVLNVGMVATPMLYFAAINECGGSGVMITG
                     SHNPPDYNGFKMMLGGDTLAGEAIQELLAIVEKDGFVAADKQGNVTEKDISGEYHNHI
                     VGHIKLKRPMKIAIDAGNGVGGAFAGKLYKGLGNEVTELFCDVDGTFPNHHPDPSKPK
                     NLQDLIAALKNGDAEIGLAFDGDADRLGVVTKDGNIIYPDRQLMLFAQDVLNRNPGAK
                     VIFDVKSTRLLAPWIKEHGGEAIMEKTGHSFIKSAMKKTGALVAGEMSGHIFFKERWF
                     GFDDGLYAGARLLEILSASDNPSEVLNNLPQSISTPELNIALPEGSNGHQVIDELAAK
                     AEFEGATEIITIDGLRVEFPDGFGLMRASNTTPILVLRFEADTQAAIERIQNQFKAVI
                     ESNPNLSWPL"
     gene            complement(18034..18789)
                     /locus_tag="ACFM6C_000523"
     CDS             complement(18034..18789)
                     /locus_tag="ACFM6C_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HFC6158024.1"
                     /translation="MIKIRNIHKTFGENTILRGIDLDVGKGQVVVILGPSGSGKTTFL
                     RCLNALEMPEDGQIEFDNERPLKIDFSKKPSKHDILALRRKSGMVFQQYNLFPHKTAL
                     ENVMEGPVAVQGKPAAQAREEALKLLEKVGLGDKVDLYPYQLSGGQQQRVGIARALAI
                     QPELMLFDEPTSALDPELVQDVLDTMKELAREGWTMVVVTHEIKFALEVATTVVVMDG
                     GVIVEQGSPKELFDHPKHERTRRFLSQIQSTKI"
     gene            complement(18799..19515)
                     /locus_tag="ACFM6C_000524"
     CDS             complement(18799..19515)
                     /locus_tag="ACFM6C_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFC6158025.1"
                     /translation="MFNNFLASLPFMTETRADMIVSAFLPMVKAGFAVSLPLAAASFV
                     IGMMIAVAVALVRIMPAGGIVRKILLKLVEFYISVIRGTPLLVQLVIVFYGLPSVGIY
                     IDPIPAAIIGFSLNVGAYASETIRAAILSVPKGQWEAGFSIGMTYMQTFRRIVAPQAF
                     RVAVPPLSNEFIGLFKNTSLAAVVTVTELFRVAQETANRTYDFLPVYIEAALVYWCFC
                     KVLFLIQARLEKRFDRYVAK"
     gene            complement(19505..20332)
                     /locus_tag="ACFM6C_000525"
     CDS             complement(19505..20332)
                     /locus_tag="ACFM6C_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6158026.1"
                     /translation="MMLKKFVLGGIAALVLAACGGSEGGSGASSVPAQSAVSGSLIER
                     INNKGTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMA
                     GLKAGRFDVVANQVGLTSPERQATFDKSDPYSWSGAVLVARNDSNIKSIDDIKGVKTA
                     QSLTSNYGEKAKAAGADLVAVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGV
                     KIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKDISVQ"
     gene            20617..21525
                     /locus_tag="ACFM6C_000526"
     CDS             20617..21525
                     /locus_tag="ACFM6C_000526"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Dyp-type peroxidase"
                     /protein_id="HFC6158027.1"
                     /translation="MNTPQSAIIPDHAQAGIFIEADFAANRLNDIKAACRASLDALTA
                     LKARFPDDILGLTIAFGSKAWATFGHTDEGSEIKPFSEMGNGLAPSTQHDMSIHIQSF
                     RQNAAYALAQSVLGAFGDSICVASEEHGLRLYQDRGLDGFVDGTENPQGDENVREVAI
                     IPEGKPDAGGSYVLLQKYLHDLKKWDAVPVAEQEASVGRGKETDDEFGRDVRLPDSHL
                     GRVNLKENGVGLKIVRRSLPFGKISGEHGLMFTAYCRTLHNIEAQLLSMFGDTDGKTD
                     LLLRHLSAAVSGGYYYAPSVERLQNL"
BASE COUNT         5333 a         6344 c         5307 g         4583 t
ORIGIN      
        1 gcgcttgaac acgccgacgg gttgcgcgac atcgtccggc tacccgagtt caaccgagat
       61 actgttttat ggctgggcgg cggcagcaat atccttttga tggaggacta cgccggtctg
      121 gtcgtacata tggaaaacaa aggcatacgc gaaattgctc gttcagacgg catggttctg
      181 attgaagcgc aggcgggcga aatctggcac gattttgtcc tgcacgccgt cgcgctgggt
      241 ttgaacggtt tggaaaacct gagcctgatt ccgggtacgg tcggcgcgtc gcccgtgcag
      301 aacatcggcg catacggcgt agaggcgaaa gatgtgattc acagcgtgcg ctgcttcgat
      361 ttggatacgg aaacctttgt aaccctttcc aatgccgact gccgcttcgc ctaccgcgaa
      421 agcctgttca agcaggaagg taaagggcgt tatgtgattg tttcggtcgt atttgcatta
      481 aaaacgcatt ttgtgccgaa cttgggttac ggcgatttgg cggccgccgt tgccgaactg
      541 agcgcgggca gggtgccgac ggcgaaagat gtttccgatg cagtgtgtgc aatccgcaac
      601 agtaaacttc ctaatcctaa cgtgcttggc aatgtcggca gtttctttaa aaaccccgtc
      661 gtcagcgcag aaaaagccgc caccttgttg cagcggcatc ctgatatgcc gcgctatccg
      721 cagcccgacg gttcggtcaa actcgccgcc ggctggctga tcgaccaatg tcgtctgaaa
      781 ggctttcaaa tcggcggcgc ggcggtacat gacaggcagg ctttggtctt agtgaacaaa
      841 aacaatgcct cggcaaacga tgtccggcag ttggcgcaac acatcaaatt tacagtattt
      901 gctcggtttc aggtagaatt gcacgccgaa cccaattggc tgcctgcttc gttcagcctg
      961 taaatccaag gagtatgccc gtgacccgcc ccgccaaaat caatacttac acacgcatca
     1021 tcgacgccag ccttgcgctt ttcaacgagg aaggcgagcg caacatcagc accaaccata
     1081 ttgccgccca cttgggcatc agtccgggca acctctatta ccacttccgc aacaaagacg
     1141 aaatcatcgt ccaactgttc aaacgttaca gcgaagccct gctggaatac ctcaacgaag
     1201 ccgtgttgcc gtctgatgtg gaagactcca tcaattatat ggcgggcatt tacgacgtga
     1261 tgtgggaata ccgcttccta ttcagcgacg tgaacaccct gcttgcacgc agtgccgaac
     1321 tattgggcga acacaatacc ttcacccaag ccaaagtctc cccgctcttg gtcaacctgc
     1381 tgacccagct caacggtctg aacatcatcc aagccgacca aaccgccatg aacgacctcg
     1441 ccgtcaatat gtggatgatc acgaaatact ggttcgactt cgacagctcc ctgcgcggcc
     1501 gcaccaagct gaccgaagac tccaaagcac gcggcatccg ccgcacctta agcctccttc
     1561 gtccttatct tttgcccgaa caccgcgaga aatacgaccg gaaaatcggc aacggcaacc
     1621 cgtaaaccca cagcgtccga atcagccttc agacggcact tacccgacgg tatcagcgaa
     1681 tgcgcgcagt ccccccgccc catatctcca tcacaggcct aggttacctc ggcctgccgc
     1741 tggcacaaaa gttttaccaa cacggcagcc gcgtcgccgc cataaaacgc agcctgactt
     1801 cggacgacat caacctgccc atacatctcg acaccttcga cctcggcagc accgatgcct
     1861 ttcagacggc attgtggcgg caccacgccg acaaacccgt ctggttcttc ctgctaccgc
     1921 cctcctcgct gacgcattac gccgacaccg tcaaacaatg ggcagaactt gcccgggcgt
     1981 gcaacgtgca acacctgatt ttcacaagca gcaccagcgt ttacggcgat acagcgcgcg
     2041 aatgcgacga aaccgccaca cccgatccgc aaaccgagtc cgcccgccaa atcctcgccg
     2101 ccgaacaaca cctgctcgac agcggcatct ccaacatcga catcctgcgg ctgggcgggc
     2161 tttattgcgc cgaacgccat cccgtcagcc gccttgttca aaagcaaaac atcccgggcg
     2221 gcaaccgccc catcaacatc gtccaccgta atatcgccgt cgaaagcctg tttcagacgg
     2281 catttaaccc cggcggcagg cggctgaaaa acattatcga accgcgccac ccgacacgac
     2341 gcgaattcta cacggaagaa gccgccaaac tcggtttgcc ggctcctgat ttcgcacccg
     2401 acgacagcat gggcaaaatc atccgtaccg tttgcgataa cagcttaagc ctgtaaaata
     2461 agtgtcaaca gcaacaaaca ggcattctcc gccccgatca gaaaatatgt ccgccctcct
     2521 ccccatcatc aaccgcctga ttctgcaaag cccggacagc cgctcggaac ttgccgcctt
     2581 tgcaggcaaa acactgaccc tgaacattgc cgggctgaaa ctggcgggac gcatcacgga
     2641 agacggtttg ctctcggcgg gaaacggctt tgcagacacc gaaattacct tccgcaacag
     2701 cgcggtacag aaaatcctcc aaggcggcga acccggggcg ggcgacatcg ggctcgaagg
     2761 cgacctcatc ctcggcatcg cggtactgtc cctgctcggc agcctgcgtt cccgcgcatc
     2821 ggacgaattg gcacggattt tcggcacgca ggcagacatc ggcagccgtg ccgccgacat
     2881 cggacacggc atcaaacaaa tcggcaggaa catcgccgaa caaatcggcg gattttcccg
     2941 cgaatccgag tccgcaaaca tcggcaacga agcccttgcc gactgcctcg acgaaataag
     3001 cagactgcgc gacggcgtgg aacgcctcaa cgaacgcctc gaccggctcg aacgcgacat
     3061 ttggatagac taaccttcag acggcatccg acatgaacag cccttttcac aacatcggca
     3121 tcgtaacccg ccccaacacg cccgacatcc aagacaccgc acacacgctg attacctttt
     3181 tgaagcagca cggctttacc gtctatctcg acgaagtcgg cataaaggaa ggctgcatct
     3241 atacccaaga caccgtcggc tgccatatcg tcaacaagac cgaactgggg caatactgcg
     3301 acctggtcgc cgttttaggc ggagacggca cctttctctc cgtcgcccgc gaaatcgccc
     3361 tgcgcgccgt tccgattatc ggcatcaacc aagggcattt gggcttcctg acccaaattc
     3421 cccgcgaata tatgacggac aagctattgc ccgttttaga agggaaatac cttgccgaag
     3481 agcgcatcct gattgaggcc gcactcatcc gcgaaggcaa aaccgccgaa cgcgccatcg
     3541 ccctcaacga tgccgtcctc tcccgtggcg gtgccggaca gatgattgag tttgaagtct
     3601 tcgtcaatcg ggaattcgtc tatacccagc gttcggacgg gctgattgtc tccaccccca
     3661 ccggatcgac cgcctattcg cttgccgccg gcggccccat catgcaggca ggattacacg
     3721 ccttcacgct cgtccccatc tgcccacaat ccatgaccaa ccgccccatc gccattccag
     3781 acacgtccga aatcgaaatc ctcgttaccc aaggcggcga cgcgcgcgtc catttcgacg
     3841 gtcaaaccca tatcgacgtg caaaacctcg accgcatcac catccgccgc taccgaaatc
     3901 ccttacgcat tttgcacccg accgactacc aatatttcaa aaccctgcgc caaaaactgc
     3961 actggggcga gcaattagtc taagccggcc tttacccgaa agtatccatg aatcccaaaa
     4021 tttcctccga ccatacagaa gatgccgtgc gcctctccaa acgcatggcg caactggggc
     4081 tttgttcacg ccgcgaagcc gacggctata tcgaacaggg ttgggtaacg gtcaacggca
     4141 aaaccgccgt actcggtcag aaagtttcac cggcagaccg tatcgaactg aacaagaaag
     4201 cccacgaaca gcaggcggca cgcattacca tcctgctgaa caaacccgtc ggctatgtca
     4261 gcgcacaagc ggaaaaaggc tataaatccg ccgccgaact gattacccct gaaaatcgct
     4321 gggaaggcga caccagccgc atccgtttcg atccgaaaca caaaatcggc ctagctcccg
     4381 ccggcaggct cgacatcgac tcggtcggat tgctggtgtt gacgcaagac ggccgtatcg
     4441 ccaagcagct tatcggcgaa aacagcggca gtgaaaaaga atatttggtg cgcgtgcgcg
     4501 gcaaattgga cgaaaaagga cttgccttac tgaatcacgg attgagtttg gacggcgaga
     4561 aactgcgtcc cgcccaagta gaatggcaaa acgaagacca actgcgcttc gtgttgaaac
     4621 agggtaaaaa gcggcaaatc cgccgtatgt gcgaactggt cggactgcgc gtcgtcgggc
     4681 tgaaacgcat ccgcatgggc aaggtcaaac tcggcaggct gccgcccggc aaatggcgtt
     4741 atctcgcccc cggtgaatcg ttttaaataa gcattaaaaa atgccgtctg aaaatccttg
     4801 cgttttcaga cggcattgcc ttatgcccaa ataacggttt cttccaaggg cctgcgcgcc
     4861 ttcgtggcga tttcctgaac gcggtagccg aatgtcgcgg cgacggacac gccccattct
     4921 gccgcatcga acaaaccgaa ctgcccggac aatacgcgtt ccatatcggc atagttgaaa
     4981 ccttccaccg ggcaggaatc gatacctgcc atcgccgcac ccgtcatcat gttgcccaac
     5041 gcgatatagg tctggcggca acaccagtca aacaaggcgc gcgaatcgtc caaaatcttg
     5101 atgtcgtcgg cttgaaacgc ctgatacctc gccaaagatt ttgccatggc atccggttcg
     5161 gtaacgccgc gccgtttgag gctttccaac ataaacgggc tgtcgaagcg ggcatttttc
     5221 tttgccaaaa acaccaccaa atgactggcg gtatccaaag catccgccat accccaagaa
     5281 aacggcttga ttgcctgtcg gatttcgggg ttttgaacca caacaaactg ccaaggctcc
     5341 gaaccgaccg aactgggcga caaacgcccg agttctaaaa taaactgaaa atcctcggca
     5401 ctgattttac gtgccgcatc gtaatgccgg catgatttgc ggtttttaaa tgcggataga
     5461 acctgctctt tgcttaatac tgccatcgta catcctttca ttacttgtat tgcaaattga
     5521 tttcaaaccg atacggcggc agattcgcca ataacgccca aacgcctttc agacggcatt
     5581 tggttcatcg caaacacgcc tacgggtagg cgatataggc ataagccgaa tggttgtgga
     5641 tagattcgaa attctcactc tcgacgacga aactcttgat gcgtttgtcg gcaatcagcg
     5701 aagtagcgac atcgcgcacc atatcttcca cgaatttcgg gttttcgtag gctttttcgg
     5761 taacgtattt ttcatcgggg cgtttgagca ggccgtagag ttggcagctt gcctgtgcct
     5821 ccacataatc gatgacttcc tcaataccga cttcggcatc ggcagtcagg ctgacggtaa
     5881 cgtgcgaacg ctgattatgc gcgccatatt gggaaatttc tttggaacac gggcaaagcg
     5941 aggttacggg aatcatgacc ttcatactgt ggccgtatgc cccgtctttg atttcgcccg
     6001 tgagacagac atcataatcc agtaaggacc gaataccgga aaccggcgcg gttttcttgc
     6061 ggaaaaacgg aaaagaaacg ctgattttgc cggcgcggga atctaaaagc gcgaccattt
     6121 cggtagtcag cttgcgcaat tgtgcaaaat ccaaggcttc ggcatgttgc tccatcaatg
     6181 cgacaaaacg cgacatatgc gtccccttct gctcagcagg caggtaaacc gtcatggtca
     6241 gacgggcaat ggtggactgg atgccttctg cagtttgcag ggtaatcgga aagcgcaggt
     6301 ctttgatacc gacctgattg atcggcagat tgcgcaaatc tcggctggat tgcacgtctg
     6361 caatagtgtt catgagttgt ttttccttaa tattcatgta attgttgaga tgtgtgcatg
     6421 gtatggcgtt tccgccgggg aatataccgt caatctgcaa atgcgagatt atatcactcg
     6481 cttttagcag ctgcattgat tgtttctatt tttcagatag tgataaaatc ttcggttatt
     6541 cacatctaca taggcagaga ccaaatgaaa ttcgccacga aagccattca ttccagctac
     6601 gattgcgaca aacacaaccg cgcgctgatg ccgccgattt atcaaaacag tatgtttgcg
     6661 ttgcacgaga ttggcgaaaa tgtgccttac cgttattcgc gcctgagcaa cccgacccgt
     6721 cagattttag aagacaccgt tgccgatttg gaacacggtg cggcaggttt tgcgttttcc
     6781 agcggtatgg cgggaattga tgccgtatgg cgcactttcc tgcgcccggg cgataccatt
     6841 gtcgccgtcg ccgatattta cggcggcgct tatgatttat tggtcgatgt ttatcaaaaa
     6901 tggggggtga acgttgtttt tgccgattta ggcaatccgg ataatttgga cgaactgctt
     6961 aaagcgcaca aggtcaaact ggtttggctg gaaacgccgt ccaatccact tttacgcttg
     7021 gtagacatca aagtccttgc cgcaaaagcc aaagcagccg gtgcgctggt cggtatcgac
     7081 aacacttttg ccacgccgta tctgcaacag ccgttggata tgggttgcga ttttgtattc
     7141 cattccgcta ccaaatattt gtgcggccat tccgacgtgt tgatgggcat cgtcgttgcc
     7201 aaaaccaaag aactggcgca gcctttgcac gatatgatgg tgcataccgg cgcggttgcc
     7261 ggcccgctgg actgctggct ggtgttgcgc ggcatcaaaa cactggctct gcgcatgaac
     7321 gcccattgcc aaaacgcact cgaaatcgcg cgccgtttgg aagcccatcc tgccattgaa
     7381 aaagtgttcc atcccggcct gccgtctcac gaacattacg aactggcgaa aacacaaatg
     7441 cccaaaggca tcggcggcgt ggttacggtt tatctcaaaa acgacacgcg tgaagcggca
     7501 aacagcgtga ttaaaaacat gaaactggtc aaaatggctt ccagcatcgg cggtgtggaa
     7561 agtttggtca accattgcta ttcccagtcc cacagcggcg taccgcatga tgtgaaaatg
     7621 gaaatgggca tcaaagtcgg tctgctgcgt ttctccatcg gcatcgaaga cgcggacgat
     7681 atttggaacg atatttccgc cgcactcgat acaactttgt aaactgtaaa aatgccgtct
     7741 gaaaccatgg tttcagacgg catttcaatt aacccggccg aaaatcaacg cttcaacatc
     7801 tttgccgcct caatagcgta ataggtcaaa atcccgtccg cacccgcacg tttgaatgcc
     7861 agcaggcttt ccaaaaccac tttgccgccg tccagccagc cgttggcaat cgctgcctgc
     7921 aacatcgcgt attctcccga aacctgatag gcataagtcg gtacgccgaa ctcgtccttc
     7981 acgcggcgga caacgtccaa atacggtaaa ccgggcttca ccatcaccat atccgcacct
     8041 tcccgaatat cgagcgccac ttcattcagc gcctcatcgg tatttgcagg atccatctga
     8101 taggtctttt tatctgcctt gcccaaattg cccgaactgc ctaccgcatc acggaaagga
     8161 ccatagaatg cagaagcata tttggcggaa tatgccataa tccgcgtatg gatatgtccg
     8221 gtatcctcca aagcctcgcg gatggtgccg atacgcccat ccatcatatc ggaaggagca
     8281 acgacctgcg cacccgcctc tgcatgacat aaagcctgtt tcaccaagac ttctacggtt
     8341 tcatcattca tcacgtaacc gttttcgtcc gtcagtccgt cctgaccgtg aaccgtataa
     8401 ggatcgagcg cgacatccgt cataatgccc agttcgggaa acctctcgcg caaggctcgg
     8461 acggccgtcg gcaccagtcc ttcagggtta tacgcctcct gcgcacattc cgtcttattt
     8521 gccgtaacga cagggaacag tgccagcatg ggtattccca aatttgacgc ttcctccgcc
     8581 gtaaacagca acctgtccaa actttgacgc ttcacgcccg gcatagaagg cacatcctcc
     8641 tcgcgcgccg acccctccaa tacgaacacc ggataaatca aatcatcggc ggtcagcgtg
     8701 tgttcgcgca tcaggcggcg tgaaaaatca tccctgcgca tacggcgcat acgcgaagcc
     8761 ggaacattgc ggtaaggaaa ctgcataagc cctccaatca tcctgtcaac aattcaaacc
     8821 atacggaagc cgccgcaact tgcagacagc atcgggcggc aatcaaaatc cgttttcacc
     8881 ggaaagggtt tcggcccgcc gaaatgccgc gccgaaggac ggcgtcccgc ccattaaaga
     8941 acaatagcaa aacaaccgct tcaggctgtc aggcttcgat attcttacgc cacaatacca
     9001 aaagtttccc gatatgctga acaggttgcg cgtcaaccgc ctcacataag gcagtgcaga
     9061 tttcgatacg ttcggcacgg tcgtcgccga atacgcgcac tttaatcagc tcatgcgccg
     9121 tcaatgccgc atcggtttcc ttgatgaccg cgtccgtcag accctgctga ccgaccatca
     9181 caacaggatg gagatggtgc gcgcgcgctt tcagttccaa aatttctttg gtgttcaatt
     9241 tggtatccgt cattttccta ctgcttgaat aaaaagaata atgcggcatt gtacgcgatt
     9301 tggcacgaca tcggcaaaat taacgtacaa tacgcggttt ccattccgac ccgcgaacca
     9361 ctatggctgt acgttccaaa tcctcaaaag cgtggctgca cgaacacgtc aacgaccact
     9421 acgtccatat ggcgcaaaaa gacggctacc gcgcccgtgc cgcatacaaa cttttggaaa
     9481 tcaacgacaa agacaaatta atcaaacccg gcacggtact tgccgacttg ggcagcgcac
     9541 cgggaagctg gtcgcaggtt gccgccaagc tgacgggtac ttccggagca gttttcgcct
     9601 tggacatcct gcctatggaa gccatagggg gcgtctcctt cattcagggc gacttccgcg
     9661 agaacgacgt actggcacaa ttcgaaacct tgttggacaa ccgcccgctc gaccttgtaa
     9721 tttgcgatat ggcgcccaat atgtcgggaa acgccgtaag cgatcaggca cgcagctttt
     9781 atctgtgcga actggcttta gacttcgcct cgcaacacct gaaaaccggc ggcagctttt
     9841 tggtcaaagt ctttcagggt gcaggctatc aggaatacat ggcagccatg cgcgaaattt
     9901 tcggcacggt gcagacgcgc aaacccgaag cctcgcgcaa tcgctccagt gagatttatt
     9961 tattgggcaa aaataaacgc tgacaataca gacggcgtgc tttacaatca tttccgtttt
    10021 acacctcaat tatggagcct tgctaagtgg ggaacacctt taaatcaatc cttgtctggg
    10081 tcgccttggg tatcggcctg atggctgcgt tcaacgcttt agacggtaaa aaagaagaca
    10141 acgggcaaat cgaatattct cagttcatcc aacaggtcaa caacggcgaa gtatccggcg
    10201 tcaacatcga aggatccgtc gtcagcggct acctgattaa gggcgagcgc accgacaaaa
    10261 gcaccttctt caccaacgcg cctttggacg acaacctgat taaaacactg ctcgacaaaa
    10321 acgtccgtgt aaaagtaacg ccggaagaaa aaccgagcgc gctggctgcc ctgttttaca
    10381 gcctgctgcc cgtcctgctg ctgattggcg cgtggttcta ctttatgcgt atgcagacgg
    10441 gcggcggcgg aaaaggcggc gcattctcat tcggcaaaag ccgcgcccgc ctactggaca
    10501 aagatgccaa caaagttacc tttgccgatg tcgccggctg cgacgaagcc aaagaagaag
    10561 tgcaggaaat cgtcgattac ctcaaagcgc cgaaccgcta tcaaagcctg ggcgggcgcg
    10621 tgccgcgcgg catcctgctg gcgggcagcc cgggtacggg taagacgctt ttggcgaaag
    10681 cgattgcagg cgaagccggc gtgccgttct tcagcatttc aggttccgac tttgtcgaaa
    10741 tgttcgtcgg tgtcggtgca agccgcgtcc gcgatatgtt cgagcaggcg aagaaaaacg
    10801 ccccctgcat catctttatc gacgagattg acgcagtcgg ccgccaacgc ggcgcaggtt
    10861 tgggcggcgg caatgatgag cgcgagcaaa cattaaacca attgttggtt gaaatggacg
    10921 gttttgagag caatcagact gtaattgtga ttgcggcaac caaccgcccc gacgtactcg
    10981 atcctgcgct gcaacgcccc ggccgtttcg accgccaagt ggttgtcccc ctgccggaca
    11041 tccgggggcg cgaacagatt ttgaacgtcc attctaaaaa agtgcctttg gacaaatctg
    11101 tggatttatt gtccctcgcg cgcggcacgc cgggtttttc cggcgcggat ttggcgaact
    11161 tggtcaacga agccgccctg tttgccggcc gccgcaataa agtcaaagtc gatcagagcg
    11221 attttgaaga cgccaaagac aaaatctata tgggtccgga acgccgcagt atggtgatgc
    11281 acgaagacga aaaacgtgcg acggcgtatc acgaatccgg acacgcgatt gttgccgaaa
    11341 gcctgccctt taccgacccc gtccacaaag taaccattat gccgcgcgga cgtgcgctgg
    11401 gtctgacttg gcagcttccg gagcgcgacc gcatcagtat gtataaagat cagatgttga
    11461 gccagctctc catcctgttc ggcggacgga ttgccgaaga catcttcgtc ggacgcatct
    11521 ccaccggcgc atcaaacgac tttgaacgcg caacccaaat ggcgcgcgaa atggtaacgc
    11581 gctacggcat gagcgacaaa atgggcgtga tggtttatgc ggaaaacgaa ggcgaagtct
    11641 tcttgggacg cagcgtaacc cgttcgcaaa acatttccga gaaaacccag caggacatcg
    11701 acgcggaaat ccgccggatt ttggacgagc aatatcaggt tgcctacaaa atcctcgatg
    11761 aaaaccgcga caagatggaa acgatgtgca aagccctgat ggaatgggaa accatcgacc
    11821 gcgatcaggt actggaaatc atggcgggca aacaacccag tccgcccaag gattacagcc
    11881 acaacctgcg cgagaatgcg gacgcggcgg aagataacgc gccgcacgct ccgactcggg
    11941 aagaaaccga agcacctgcc ccggcagaca ccgcttcgac agagtccgag cagcagcctg
    12001 aaaacaaggc ttaacttccc gaacaaacgg cagcccgcaa gctgccgttt tcccatcctg
    12061 ttttcagacg gcattttcca ctcaatgccg tctgaaacgc caaagccgta tcggttttta
    12121 cgaatctgcg atatggcggt ttaaattgaa atcagaacgg ggcaaggctg taccggttta
    12181 aaattaaacc gctataatac cgcccttcga atacacgccc gcattggtga tgcccgtgaa
    12241 aaaagttgaa aaaaacatct tggtgctgca cggcgcggac aaaatgttcg agctggtcga
    12301 caaggttgag gattacccgc actttctgcc gtggtatagc aaaaccgagg tcatcggacg
    12361 tagcggcaac gaactgaagg cacggctgtt tatggactat atgcacgttc gccaatcgtt
    12421 tgccacgcac aaccgcaaca ttccgggcag ggaaatccgt atggaactgc tcgagggtcc
    12481 gttcaaaacc ttacgtggaa cgtggaaatt tatcgatttg ggcgacgata tgtgcaaaat
    12541 cgaattcaat ttggaatacg atttttccaa tgccgttttg tccgccttaa tttcccccgt
    12601 cttcaaccac ctttccgcca cgctggtcga agcgttcgtc aaagaggcag accgccgtta
    12661 tgcttgaaat tgagattgtg tacgggctgc ccgaccgaca ggttttgaaa accatgcagc
    12721 ttgccgaggg aacaaccgtc cgcgccgccg cactgcaaag cggtttggac ggcatatttg
    12781 aagatttaaa cctgcattcc gcgcctttgg gcattttcgg caaagccgtc aaagacgaca
    12841 cgcccctgcg cgacggcgac cgcatcgaag tgtaccgccc gctgttgatc gatcccaaag
    12901 aagcgcgccg caaacgcgtt caaaatcaag aagaataacc atgccgtctg aagccttcag
    12961 acagcattcg acagaaacac ggaaaatatc atgtcaaaca aaatcaaaat ggttgtcggc
    13021 ttgggcaacc ccggcaaaga atacgaacaa acccgacaca atgcgggttt ttggttcctc
    13081 gacgaactgg cgtggaaatg gaaggcttca tttaaagaag aaaaaaaatt cttcggcgaa
    13141 gtcgcccgtg ccgccctgcc cgacggcgac gtttggctgc tcaaacctgc cacgttcatg
    13201 aaccgttccg gacaggcagt tgccgcgctt gcacagttct acaaaatcaa acccgaagaa
    13261 atcctcgtcg tccacgacga actcgacatt ccctgcggac gaatcaaatt caaactcggc
    13321 ggcggcaacg gcggacacaa cggcttgaaa gacattcagg caaaactcgg cacggcagac
    13381 tattaccgcc tgcgcctcgg catcggccac ccgggcgacc gcaacctcgt cgtcggctat
    13441 gtcctgaaca aacccagtac ggaacaccgc cgacagattg acgatgccgt cgccaaatcc
    13501 ctgcaagcca tacccgacat ccttgccggc aaatgggaag aagcaacccg cttcctgcac
    13561 agcaaatgac ccgatgccgt ctgaagccct ttcagacggc atgttcccga tttccatatc
    13621 cgaacagtca tgaccgaact caagcagctt atccaaaccg aatccatccc cgtcatcgaa
    13681 gaaaccctcg atttcctgct gtacgaatgc agcatcgacg acgcaccatc cgccgaagaa
    13741 gtggcacaat ggcgcgacat acttgccgca cgcggcggca aattcctgcg cctgtccaaa
    13801 atctgccaaa cgtggctgga cgaggaggcg gcatgaagct gccgcgcaac cgcttcagcc
    13861 tgctttccgc attgtggttt gccggcggca tctattcgct gctcttcaaa gctgccgaca
    13921 ccgcgccgcc gccgtttccg catttcgaca aagcagcaca ccttgccctg tttttcgcac
    13981 aaatctggct tttgaccaaa gcattcaaaa ccggaaaact tcccatcccc taccgcagcc
    14041 tgatggtctt tgccctctgt ttcgccctct tcagcgaatg cgcgcaggca tggtttaccg
    14101 caacgagaac cggcagtttg ggcgatgttc ttgccgatat ggcaggtacg gttctcgcac
    14161 tctttgccgc ccgcgccgcc gaccgcccgg actgaatcgg tttatttccc ccaaacagga
    14221 tgcacctctt cccgatacat cctatttttc cccttacata tcaatcccat ctcataaaca
    14281 aaaccgacaa atcgtttaca atatatttac actacatcag attacaaata tactcgaacc
    14341 agttgcagaa tcggcggttc cacaaaccgt ttcggattgc acgacacaaa agaaaaaccg
    14401 attttattgc cttaaaggag tattcatgaa cctgcatgca aaggacaaaa cccagcatcc
    14461 cgaaaacgtc gagctgctca gtgcgcagaa gccgattacc gactttaagg gcctgctgac
    14521 caccattatt tccgccgtcg tctgtttcgg catttaccac atcctgcctt acagccccga
    14581 tgccaataaa ggtatcgcgt tgctgatttt cgttgccgca ctttggttta ccgaagccgt
    14641 ccacattacc gttaccgcgc tgatgatccc tatcctcgcc gtcgtactcg gtttccccga
    14701 catggacatc aaaaaggcga tggctgattt ttccaacccg attatctaca tttttttcgg
    14761 cggtttcgca ctcgccaccg ccctgcatat gcagcgtctc gaccgcaaaa tcgccgtcag
    14821 cctgctgcgg ctgtcgcgcg gcagtatgaa ggccgccgtg ctgatgttgt tcctcgttac
    14881 cgcctttctg tccatgtgga tcagcaacac cgccaccgcc gcgatgatgc tgcctctggc
    14941 aatgggtatg ctgagccacc tcgaccggga aaaagaacgc aaaacctacg tcttcgtcct
    15001 gctcggcatc gcctattgcg ccagcatcgg cggcttgggc acgctcgtcg gctcgccgcc
    15061 caacctgatt gccgccaaag ccctaaatct ggacttcgtc ggctggatga agctcggcct
    15121 gccgatgatg ctgttgattc tgcccttgat gctgctctcc ctgtacgtca tcctcaaacc
    15181 taatttgaac gaacgcgtgg aaatcaaagc cgaatccatc ccttggacgc tgcaccgcgt
    15241 gatcgcgctg ttgattttcc ttgccacagc cgccgcgtgg atattcagct ccaaaatcaa
    15301 aaccgccttc ggcatttcca atcccgacac cgttatcgcc ctgagtgccg ccgtcgccgt
    15361 cgtcgtcttc ggcgtggcgc aatggaagga agtcgcccgc aataccgact ggggcgtgtt
    15421 gatgctcttc ggcggcggca tcagcctgag cacgctgttg aaaacatccg gcgcgtccga
    15481 agccttggga cagcaggttg ccgccacctt ttccagcgcg cccgcatttt tggtgatact
    15541 catcgtcgcc gccttcatta tttttctgac cgagttcacc agcaacaccg cctccgccgc
    15601 attgcttgta ccgattttct ccggcatcgc tatgcagatg gggctgcccg aacaagtctt
    15661 ggtattcgtc atcggcatcg gcgcatcttg tgccttcatg ctgccggttg ccacaccgcc
    15721 taacgcgatt gtgttcggca caggcttaat caagcaacgc gaaatgatga atgtcggcat
    15781 actgctgaac atcctctgcg tagtattggt tgctctgtgg gcttatgctg tactgatgta
    15841 aaccatcgac ctaaacaaca agaccgtctg aaagaatatt tttcagacgg ccttgaagtt
    15901 tgtcgttcag acacaatttg tcgaatcatt caaaaccgga ttctaacgaa aggaaaccca
    15961 tgattatcct gcacaccaac aaaggcgaca tcaaaatcga actcgatttc gacaaagccc
    16021 ccgttaccgc caaaaacttc gagcaatacg tcaaagacgg cttctacgac ggcgtaatct
    16081 tccaccgcgt catcaaaggc ttcatgattc aaggcggcgg catggatgaa aacatgaacg
    16141 aaaaagaaac ccgcgatccg attcaaaacg aagcgtccaa cggcctgccc aacgataaat
    16201 acaccatcgc catggcacgc acttccgacc cccattccgc cagcgcgcaa ttcttcatca
    16261 acactgccga caacgctttc ctgaacttcc gttctaaaga gctgtacggc aaaaccgtcg
    16321 tccaagactg gggctatgca gtattcggta aagtcgttga cggttttgac gttgtcgatg
    16381 ccatcgaagg cgtatccacc aaacgccacg gctaccatga cgacgtaccg agcgaacctg
    16441 tcgtcatcat taaagccgaa gcggtataaa ccggcaatcc gaaagcagcc tgcacaaagg
    16501 ctgctttttt tgtttcaggc ggcataaaat ccaagcacat atgccgtctg aacacctccc
    16561 gcaagccttc ggacaatgtt gcaacgtgtt aaaatagcct cctttcctga aaccacaaca
    16621 aggaaaccat catggcaaat attgcccgcg acatcttcaa agcctacgac atccgaggca
    16681 ttgtcggcaa aaccctgact gacgatgccg cctatctcat cggcagggcc atcgccgcca
    16741 aagccgccga aaaaggcatg acccgcatcg cgctcggacg cgacggacgc ttgagcggtc
    16801 ccgaactgat ggagcacatc caacgcggct ttaccgacag cggcatcggc gtactcaacg
    16861 tcggcatggt cgccactcct atgctctatt ttgccgccat caacgaatgc ggcggcagcg
    16921 gcgtgatgat taccggcagc cacaatccgc ctgattacaa cggtttcaaa atgatgctcg
    16981 gcggcgacac gctcgcaggc gaagccattc aagaactttt agctattgtt gagaaagatg
    17041 gttttgttgc cgccgacaaa caaggcaacg taaccgaaaa agacatctcc ggcgaatacc
    17101 acaaccacat cgtcggccac atcaaactca aacgccccat gaaaattgcc atcgacgcgg
    17161 gcaacggcgt gggcggcgcg tttgccggca aactctataa aggcttgggc aacgaagtaa
    17221 ccgagctttt ctgcgacgtg gacggcactt tccccaacca ccatcccgac ccatccaaac
    17281 cgaaaaacct gcaagatttg attgccgcgc tgaaaaacgg tgatgccgaa atcggcctgg
    17341 cgtttgacgg cgatgccgac cgcttgggtg tggtcaccaa agacggcaac attatttatc
    17401 ccgaccgcca actgatgctg ttcgcccaag acgttttgaa ccgcaatccc ggcgcgaaag
    17461 tcattttcga cgtgaagtcc acccgcctgc ttgcgccttg gattaaagaa cacggcggcg
    17521 aagccataat ggaaaaaacc ggccacagct ttatcaaatc cgccatgaaa aaaaccggcg
    17581 cgctggttgc cggcgaaatg agcggacaca tcttcttcaa agaacgctgg ttcggcttcg
    17641 acgacggtct gtacgccggc gcacgcctct tggaaatcct gtctgcctcc gataatccgt
    17701 ccgaagtgtt aaacaacctg ccgcaaagca tttccacgcc cgaactcaac atcgccctgc
    17761 ccgaaggcag caacggccat caggttatcg acgaactcgc cgccaaagcc gaatttgaag
    17821 gcgcaaccga aatcatcacc atcgacggtc tgcgcgttga atttcccgac ggcttcggtc
    17881 tgatgcgtgc ttccaatacc acgccgattc tagtgttgcg ttttgaggcg gatacgcaag
    17941 cagccatcga gcggattcaa aaccaattca aagccgtcat cgaaagcaat ccaaatttaa
    18001 gctggccgct gtaaacacag gaaaaatgct taatcaaatc ttggtagatt ggatttggct
    18061 taaaaatctc cgcgtccgtt cgtgtttggg gtggtcgaac aactctttcg ggctgccctg
    18121 ctctacgata acgccgccgt ccatgacgac gacggtcgtg gcaacttcca gcgcgaactt
    18181 gatttcgtgg gtaacgacga ccatcgtcca accttcccgc gccaattcct tcatggtatc
    18241 caaaacatct tgcaccaatt cagggtcgag cgcggaagtc ggttcgtcaa acaacatcag
    18301 ctcgggctga atcgccaatg cgcgggcaat gccgacgcgc tgctgctgac cgccggaaag
    18361 ctggtaggga tacaaatcca ctttgtcgcc caagccgact ttttccagca gtttcagagc
    18421 ctcttcgcgc gcttgggcgg caggcttgcc ctgtacggca accggtcctt ccattacatt
    18481 ttccaaggcg gttttgtgcg gaaagaggtt gtattgttga aacaccatgc ctgatttgcg
    18541 gcgcagtgcc aaaatatcgt gtttgcttgg ttttttagaa aaatcgattt tcagcggtcg
    18601 ctcgttgtcg aactcgattt gtccgtcttc gggcatttcc aacgcgttta ggcatcgcag
    18661 aaacgtcgtt ttgcctgagc cggaaggccc gaggataacg accacctgcc ctttgcccac
    18721 atccaaatcg atgccgcgca aaatagtgtt ttcgccgaag gtcttatgga tattgcggat
    18781 tttaatcata acaactcctt atttggcgac ataacggtcg aaacgttttt ccaaacgtgc
    18841 ctgaatcagg aacagaacct tgcagaaaca ccagtaaacc aatgcggctt cgatatagac
    18901 gggcaaaaag tcgtaagtgc ggtttgccgt ttcctgcgcg acgcggaaca attcagttac
    18961 cgttaccacc gctgcgagcg aggtgttttt gaacaagccg ataaactcgt tgctcaaagg
    19021 cggcacggca acgcggaatg cctgcggcgc gacgatgcgg cggaacgtct gcatataggt
    19081 cataccgatg gagaaacctg cttcccattg gcctttaggt acggacaaaa ttgccgcgcg
    19141 tatggtttcg gaagcgtatg caccgacatt gagcgagaag ccgataatgg cggcgggaat
    19201 cggatcgata tagataccga cggacggcag cccgtaaaac acaatcacaa gctgcaccaa
    19261 cagcggcgta ccgcgaatga cggaaatata aaattccacc aatttcagca ggattttccg
    19321 cacgatgccg ccggcgggca taatccgcac caaagccacg gctaccgcaa tcatcatacc
    19381 gataacgaaa gaagctgccg ccaaaggcag agacaccgcg aagccggctt tgaccatagg
    19441 caaaaacgcg ctgacaatca tatcggcgcg tgtttccgtc ataaacggca gcgaagcaag
    19501 gaaattattg aacactgatg tcttttccga agaattgttc gcccagtttt ttcagcgtac
    19561 cgtcggcttt cagctcgttg attgccgtac tgaatttcgc cacggcttcg tcattgccct
    19621 tgttgacaat caggccggaa ccgacttttt catcggcagg tgcggaccaa acgattttca
    19681 cgcccgcatt cgggtttttc ttcagatagt ccaaaaccgc caattcgtcg ttcagggttg
    19741 catcggcacg tttttgttca atcagggtca gcgattgcgc caaaccgtca acagccacca
    19801 aatctgcgcc tgcagctttg gctttttcgc cgtagttgct ggtcagggat tgtgcggttt
    19861 tcacgccttt gatgtcgtcg atagatttga tgttgctgtc gttacgggca accaatacgg
    19921 caccgctcca gctgtaagga tcggatttgt cgaatgtcgc ttggcgttcg gggctggtca
    19981 gaccgacttg gtttgccacc acgtcgaaac gccccgcctt caaacccgcc atcatcgaat
    20041 cccattgcgt ttctttaaac tcgactttca cgcccagttt ttccgccacg gcgcgggtta
    20101 cttccacatc gtaaccggtc agtttgccgt ccttgtcgtg gtaggtaaac ggtgcgtaag
    20161 tgccttccgt gccgacggta accgtgcctt tattgttgat gcgctcgatt aaagaaccgg
    20221 aaactgccga ttgtgcaggc acggaagatg ctccgctgcc gccttccgaa ccaccgcagg
    20281 ccgccaaaac caatgcggca ataccgccga gtacgaattt tttcaacatc attctctcct
    20341 gtaaaaagtg tgcaagtgcg gcattctaag tgaaattgcg gcaaacacaa agaatacttt
    20401 ttttatatgg ttattccaaa tcggaatgga aaagatatgc cgaagccgcc ggaagcggaa
    20461 ataaaggggg cgggaaaggc ggcgggcggc acgaaaccga aaagcggcat caggtatgca
    20521 aacggcggat tcacgcacgc cgttccggca aaaatccgcc tgccgattcg gtgctataat
    20581 ccatccgaaa cagatgacac caaaaaggaa catctcatga acacgcccca atccgccatc
    20641 attcccgacc acgcccaagc cggcatcttt atcgaagccg acttcgccgc caaccgcctc
    20701 aacgatatta aagccgcctg ccgcgcttcg ctcgacgcgt taactgcctt gaaagcccgc
    20761 tttccggacg atattttggg tctgaccatc gccttcggca gcaaagcctg ggcaacattc
    20821 ggacatacgg acgaaggcag tgaaatcaaa cccttctccg aaatgggcaa cgggcttgcg
    20881 ccgtccacgc agcacgatat gtccatccac atccaatcct tccgccaaaa cgccgcctac
    20941 gcgcttgccc aatccgtttt gggcgcgttc ggcgacagca tatgcgtcgc gtccgaagaa
    21001 cacggtttgc gcctgtatca ggatcgcgga ctggacggtt tcgtcgacgg cacggaaaac
    21061 ccgcagggcg atgaaaatgt ccgcgaagtc gccatcatcc ccgaaggaaa acccgatgcg
    21121 ggcggcagct atgtcctgct gcaaaaatac ctgcacgatt tgaaaaaatg ggatgccgtc
    21181 cccgtcgccg aacaggaggc ctcggtcgga cgcggcaagg aaaccgacga cgaattcggc
    21241 cgcgatgtcc gcctgcccga ttcgcacctc ggccgcgtca acctgaaaga aaacggagtc
    21301 ggcctgaaaa tcgtccgccg cagcctgccc ttcggcaaaa tcagcggcga acacggtttg
    21361 atgtttaccg catactgccg cactctgcac aatatcgaag cgcaattatt gagtatgttc
    21421 ggcgatacag acggcaaaac cgacctgctg ctccgacacc tctccgccgc cgtttcgggc
    21481 ggatactact acgcgccgtc tgtcgaacgc ctgcaaaacc tctaagccgg acgatgccgt
    21541 ctgaaaccat ttttcagacg gcatttt
//
LOCUS       DAXHPV010000020        21316 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.020, whole genome shotgun sequence.
ACCESSION   DAXHPV010000020 DAXHPV010000000
VERSION     DAXHPV010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 21316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21316
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.020"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..1005
                     /locus_tag="ACFM6C_000527"
     CDS             <1..1005
                     /locus_tag="ACFM6C_000527"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158028.1"
                     /translation="NLIHYKIESSQIKAHILAHPDYAAFKAGHLAKFAAWHTQNDLAV
                     IQPGSRPGRLIRKWSESLLDAFKPGSLIEEYDFYQILTDYWAETLQDDVYLIAQDGWK
                     AVKNLAEITKESDEAANLTVVFEETETGKKGKAKTKRISKKYRSEVIAPELVARRYFS
                     DGIAKLEEKQSELERLSQELENHIEEHGGEEGALNDVLDAKGKLSAKLLKTALEESGI
                     EEGERAVLQTTQTLMTQEKAAKDAVKTQIEALNLAVFKQFGRLSEAEIKQLAVQDKWL
                     ADLQSRIENRLENSIQQLISRLNTLEDRYRSPMAELAREVEKWQSKVNAHLENMGFGG
                     "
     gene            1156..1281
                     /locus_tag="ACFM6C_000528"
     CDS             1156..1281
                     /locus_tag="ACFM6C_000528"
                     /inference="COORDINATES: protein motif:HMM:NF013980.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158029.1"
                     /translation="MLERHRNARFMAHMDNFLPNWQSIKQQLNALELFAQIYNLT"
     gene            complement(1571..2086)
                     /locus_tag="ACFM6C_000529"
     CDS             complement(1571..2086)
                     /locus_tag="ACFM6C_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158030.1"
                     /translation="MKSKLPLILINFSLISSPLGANAAKIYTCTINGETVYTTKPSKS
                     CLSTDLPPIGNYSSERYIPPQTSEPTPSPSNGGQAVKYKAPVKTVSKPAKSNTPPPQQ
                     APVNNSRRSILEAELSNERKALTEAQKMLSQARLAKGGNINHQEINALQSNVLDRQQN
                     IQALQRELGRM"
     gene            complement(2552..4474)
                     /locus_tag="ACFM6C_000530"
     CDS             complement(2552..4474)
                     /locus_tag="ACFM6C_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HFC6158031.1"
                     /translation="MIEIKNLTLQRGLKVLLDKANATVNPGQRVGLIGKNGTGKSSLF
                     ALIKGKITQDGGDVSIPKNWRLASVSQETPDLDISALDYVLQGDAELQAFQTALRQAE
                     AQNDGMKQAEYHAKLEEIDAYTAPARAAKLLNGLGFSQEEHSRPVKSFSGGWRMRLNL
                     AQALICRADLLLLDEPTNHLDLETVLWLENHLASLPCTQIIISHDRDFLNAATTQTIE
                     LSQQKLTQYGGNYDFYQNERAQRLAQQQAAYVKQQAQIKHLQSFIDRFKAKATKAVQA
                     QSRMKALAKLERVAPAHLDSEFSFEFYHPDHLPNPLLKLEHADLGYEGKTVLHDITLS
                     LESGARYGLLGVNGSGKSTFIKALAGKIDLLSGSIVRSEKLNIGYFAQHQLDTIRADQ
                     NPVWHIQQLSPEVREQEIRNFLGGFNFAGDMALQKTEPFSGGEKARLALAMIIWQKPN
                     LLLLDEPTNHLDLDMRHALTLALQSFQGALIIVSHDRSLLEATTDSFLLIDKGRLKNF
                     DGDLNDYRQWRLAQENAAAAPAASAQSQSRKDTKRIEAQIRQEKARRGKPIQQKIDRA
                     EKEMAQLSEIQTACEAFLAQEDAYLEANKEKLQNTLSQLAKVKTQLAQIEEVWLACQE
                     ELERIETEIEKQFAER"
     gene            complement(4551..4922)
                     /locus_tag="ACFM6C_000531"
     CDS             complement(4551..4922)
                     /locus_tag="ACFM6C_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mth938-like domain-containing protein"
                     /protein_id="HFC6158032.1"
                     /translation="MLFEENPIDGQFAEYECGAGGIRLARQSFHKPVLVHKDSVCLSQ
                     CRTLSDLTPENLLSDIKPVDYPEILIIGTGAAQEFIHPKIMADFSRIGIGVECMNTDS
                     AFRTLVFLHSEGRRAWAWLQP"
     gene            5119..6426
                     /locus_tag="ACFM6C_000532"
     CDS             5119..6426
                     /locus_tag="ACFM6C_000532"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HFC6158033.1"
                     /translation="MKPVNIGLLGLGTVGGGTAAVLRDNAEEISRRLGREIRISAVCD
                     LSEEKARQTCPSAAFVKDPFELVAREDVDVVVELFGGTGIAKDAVLKAIENGKHIVTA
                     NKKLLAEYGNEIFPLAEKQNVIVQFEAAVAGGIPIIKALREGLAANRIKSIAGIINGT
                     SNFILSEMREKGSAFADVLKEAQALGYAEADPTFDIEGNDAGHKITIMSALAFGTPMN
                     FSACYLEGISKLDSRDIKYAEELGYRIKLLGITRKTGKGIELRVHPTLIPESRLLANV
                     NGVMNAVRVNADMVGETLYYGAGAGALPTASAVVADIIDIARLVEADTAHRVPHLAFQ
                     PAQVQAQTILPMDEITSSYYLRVQAKDEPGTLGQIAALLAQENVSIEALIQKGVIDQT
                     TAEIVILTHSTVEKHIKSAIAAIEALDCVEKPITMIRMESLHD"
     gene            6419..6853
                     /locus_tag="ACFM6C_000533"
     CDS             6419..6853
                     /locus_tag="ACFM6C_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158034.1"
                     /translation="MTEPKHEMPTEEQVAARKKAKAKIRTIRIWAWVILALLALTALL
                     SQCAMSKPQAKQKIVESCVKNIPFAEKWQNDLRARGLDSNNTRLAVDYCKCMWEQPLD
                     RLSEKQIRSFGKLGAQEQLDLLGGANAFEARDKQCVADLKSE"
     gene            complement(6912..7181)
                     /locus_tag="ACFM6C_000534"
     CDS             complement(6912..7181)
                     /locus_tag="ACFM6C_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007342959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HFC6158035.1"
                     /translation="MNKSELIEAIAQEADISKAAAQKALDATTNAVTTALKQGDTVTL
                     VGFGTFYVGERAERQGRNPKTGEPLTIAAAKTPKFRAGKALKDAL"
     gene            complement(7363..9825)
                     /gene="lon"
                     /locus_tag="ACFM6C_000535"
     CDS             complement(7363..9825)
                     /gene="lon"
                     /locus_tag="ACFM6C_000535"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HFC6158036.1"
                     /translation="MTQKEKHFEEYAALATLPLRDVVVYPHMVLPLFVGRPKSIAALE
                     NAITREEPVFLLAQTDAAVEEPVAADLYQTGTVAQVLQVLKLPDGTVKVLVEGLYRGR
                     VLTIEDTGGLFVSHIEAVVEEDTGGNTDLEAVRRTLLAQFEQYAKLNKKIPAEIIGSI
                     NGIAENSRLTDTVAAHLQLKLAQRQQILEIPEIGKRMEFLLAQLESELDIMQAEKRIR
                     GRVKRQMEKSQREYYLNEQIKAIHKELGEEDENGELDALEADIKKAGMTKEAEEKCLS
                     ELKKLKMMPPMSAESTVVRNYIDTLLELPWKKKSRVSKDIAKAGLVLDADHYGLEKVK
                     ERILEYLAVQKRMDKLKGPILCLVGPPGVGKTSLGESIAKATGRKYVRMALGGVRDES
                     EIRGHRRTYIGSMPGKILQNMAKAGVKNPLFLLDEIDKLGNDFRGDPASALLEVLDPE
                     QNNKFADHYAEVDYDLSDVMFIATSNSLNIPTPLLDRMEIIRLSGYTEDEKINIAMQY
                     LVPKQMKRNGVKEGELAIEESAVRDIIRYYTREAGVRSLDREIAKICRKVVMQITLDE
                     DKKRLSETKKTSKAKPKAVKVNEKNLHDYLGVRRFDYGVAESENRIGQVTGLAWTEVG
                     GELLTVEAAALPGKGVIQCTGQLGDVMKESVSAAWSVVRSRAESVGLAPDFYEKKDIH
                     VHVPEGATPKDGPSAGIAMTLAMVSAFSKIPVRADVAMTGEITLRGEVLPIGGLKEKL
                     LAALRGGIKHVLIPKDNVKDLEEIPENVKTGLTIHPVKWIDEVLALGLESQPEPWAEP
                     SGVEAAAESASKPKPRSRATKH"
     gene            9925..10101
                     /locus_tag="ACFM6C_000536"
     CDS             9925..10101
                     /locus_tag="ACFM6C_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide synthase"
                     /protein_id="HFC6158037.1"
                     /translation="MPSETFWLQTAWAWKDKAGTKNCSVLPLLAVPSVWFTVLPPYFQ
                     NMTQVSHVFFYFSR"
     gene            10076..11179
                     /locus_tag="ACFM6C_000537"
     CDS             10076..11179
                     /locus_tag="ACFM6C_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HFC6158038.1"
                     /translation="MSSFIFPDNGFEWRNESLQKPPKGWHYVRESGADGILKAAYQNI
                     ATVWQGDFHNAKQVLSAMKKRVRKPAAVRSDADIAALFHAHRMKQAQQSRILNMLAVE
                     IRPGFVLDNKRAPDIRSALLDVYGEADGKPFFLPLNLLLGFMGAHEWHKKGVAVPQLG
                     GSIHVPFGVFSPLRGEYLDLLAQAPSTGFQTALDIGTGSGVLAAILAKQGIPSVIGTD
                     TNPRAVACARANIARLGLEKQVEIRETDMFPDMRADLIVCNPPWLPAKPTSAVESALY
                     DPDSAMLAAFLRDAPKHLNPDGEIRLIISDLAEHLHLRPSDFLDKAFAQAGLRVADVL
                     KTKPIHKKAADPNNPLAFARNRETTFLYRLKKA"
     gene            complement(11251..12996)
                     /gene="recD"
                     /locus_tag="ACFM6C_000538"
     CDS             complement(11251..12996)
                     /gene="recD"
                     /locus_tag="ACFM6C_000538"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009338 - exodeoxyribonuclease V complex
                     [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0008854 - exodeoxyribonuclease V activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HFC6158039.1"
                     /translation="MERQTDEFAQAAARAAIRFLEHYAGSGDEVLANCTERLFQALQN
                     GHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRLFLGRMWQLEYDLAAEIKRLAAA
                     GTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
                     LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLL
                     KLRPPKMQAAFDHIRPLPFDVLIVDEASMLDTALMLQLLKAVKTGARVILLGDENQLP
                     SVGIGAVLSVLSQKTILDRETYKSLNLYLPEHGFPVHEDAPVLAQNTAHLSFSHRFGD
                     NSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNAQVERLYRAHKAYWQAVKDGN
                     IEAAYVGISDIVVLAAWRQDSEDFNEAYCRHVRRKMNIPEHQAYFAGEPIMIRQNDYA
                     LELFNGDIGLIMEDVGRQGSLAAYFADADGFKKVAVSCLPEFEPAFAMTVHKSQGSEY
                     REVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEEAFRQAAATVKTR
                     QTALGSMLERVFSQE"
     gene            complement(13063..13758)
                     /gene="lolD"
                     /locus_tag="ACFM6C_000539"
     CDS             complement(13063..13758)
                     /gene="lolD"
                     /locus_tag="ACFM6C_000539"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HFC6158040.1"
                     /translation="MSELILKCEGVGKRYRDGGLDVRVLHGLDLEILAGESTGIIGSS
                     GSGKSTLLHILGGLDMPSEGRVLLMGEDLRTLSQRQLGTLRNRHLGFVYQFHHLLPEF
                     SALENVMMPLLIGKKSREEAAETAMAMLEKVGLKHRSRHRAGELSGGERQRAAIARAL
                     VTQPKCLLADEPTGNLDRANARNVLDMMLELKTELGTGLVVVTHDDELAGCFGRVMVM
                     KDGSLHPKQGANA"
     gene            complement(13751..14998)
                     /locus_tag="ACFM6C_000540"
     CDS             complement(13751..14998)
                     /locus_tag="ACFM6C_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit"
                     /protein_id="HFC6158041.1"
                     /translation="MFSLEAWIGLRYLRAKKRNGFMSFITMVSIAGIALGVTALIVVL
                     SVMNGFQKEIRGQLLNVAPHAEIGYIDNTDTDWRNLLRFTENRKGILAAAPYVSNQAL
                     LANAGEIRGVQMRGILPSEERKVVEYGDKMPAGKFEDLIPGEFDIILGVGLAEALGAE
                     VGNKVTVITPEGNVTPAGVVPRLKQFTVVGLVKTGVYEVDNSLAMTHIQDARVLYRLD
                     KEVAGLRLKLADPQNAPALTATLIPEAQRDAVWVRDWTYNNRSYFEAVELEKRMMFII
                     LTLIIAVAAFNLVSSLVMAVTEKQADIAILRTLGLSPGGVMKIFMVQGAFSGFFGTLA
                     GVVCGVLLGWNVGRVVAFFENLLGVHLINSQVYFIDYLPSDVDMGDVALIACISLGLS
                     FVATLYPSWRASKTQPAEALRYE"
     gene            15203..15481
                     /locus_tag="ACFM6C_000541"
     CDS             15203..15481
                     /locus_tag="ACFM6C_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158042.1"
                     /translation="MNIRTAFALCAIALSAAAAAYAKEIKIDANNTPYSEADAQKLAA
                     TAVGMGVKEPISLNGGSGSITVSGSSATQCVFKVGNGGALQIQGLNCK"
     gene            complement(15537..16154)
                     /gene="recR"
                     /locus_tag="ACFM6C_000542"
     CDS             complement(15537..16154)
                     /gene="recR"
                     /locus_tag="ACFM6C_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HFC6158043.1"
                     /translation="MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEK
                     LVDALQTALKQVYHCAMCNTFCEGGLCDICADETRDGRRLMVVHMPADVSNMEAANCH
                     DGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
                     FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA"
     gene            complement(16221..17759)
                     /locus_tag="ACFM6C_000543"
     CDS             complement(16221..17759)
                     /locus_tag="ACFM6C_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HFC6158044.1"
                     /translation="MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGVDYIVQVGD
                     EKISEQSLNAAVQNEQAGGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV
                     DDPNFHDANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQ
                     AEQLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVA
                     LNLKDFADKQTVSETEVKNAFEERVARLPTNEAKPSFEQEKAAVENELKMKKAVADFN
                     KAKEKLGDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDV
                     LKKKHNSEVLTINSETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAK
                     DVLTQLNGGKAVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLIGLP
                     APVIVEVQAVTPPDDIAAQLPLAKQALAQQQSANTFDLLIRYFNGKIKQTKGAQSVDN
                     GDGQ"
     gene            complement(17819..18193)
                     /locus_tag="ACFM6C_000544"
     CDS             complement(17819..18193)
                     /locus_tag="ACFM6C_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase"
                     /protein_id="HFC6158045.1"
                     /translation="MIILHGIPNCDTVKKAKNRLAGYGLEFEFRDFKKQRPSEAEICS
                     WLEQVPLATLLNKRGTSWRKLDAETQQKALFSTVEAVKLMSEMPSLIKRPVLECGGKV
                     YAGFSEETYDGIFNRQAPCRQG"
     gene            18343..19971
                     /locus_tag="ACFM6C_000545"
     CDS             18343..19971
                     /locus_tag="ACFM6C_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATPase"
                     /protein_id="HFC6158046.1"
                     /translation="MISTNGITMQFGAKPLFENVSVKFGEGNRYGLIGANGSGKSTFM
                     KILGGDLEQTTGEVAIENGVRLGKLRQDQFAYEDMRVLDVVMMGHTEMWAAMTERDAI
                     YANPEATEDDYMKAAELEAKFAEYDGYTAEARAAELLSGVGISEDLHNATMAEVAPGF
                     KLRVLLAQALFSKPDVLLLDEPTNNLDINTIRWLEGVLNQYDSTMIIISHDRHFLNEV
                     CTHMADLDYNTITIYPGNYDDYMLASAQSRERALKDNAKAKEKLQELQEFVARFSANK
                     SKARQATSRLKQADKIKSEMVEVKPSTRQNPYIRFEADEKAKLHRQAVEVEKLAKRFE
                     TQLFKNLNFILEAGQRLAIIGPNGAGKSTLLKLLAGAYNPEYSDGLLPDEGSIKWAEK
                     ASVGYYPQDHENDFDVDMDLSEWMRQWGQDGDDEQVIRGTLGRLLFGSNDVVKKVKVL
                     SGGEKGRMLYGKLLLLKPNVLVMDEPTNHMDMESIESLNMALEKYNGTLIFVSHDRQF
                     VSSLATQIIELDGKGGYEHYLGDYESYLEKKGVA"
     gene            20043..21296
                     /locus_tag="ACFM6C_000546"
     CDS             20043..21296
                     /locus_tag="ACFM6C_000546"
                     /EC_number="2.7.7.72"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004810 - CCA tRNA nucleotidyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0001680 - tRNA 3'-terminal CCA addition
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional CCA addition/repair protein"
                     /protein_id="HFC6158047.1"
                     /translation="MQTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGK
                     DFPVFLHPETHEEYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDA
                     DGKIIDPFGGQRDLAAGILRHVSPAFAEDPVRILRTARFAARYKFEIAEETIKLMRQM
                     VENGEADALVAERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRAD
                     YHPEIDSGIHTLMTLQRAADMGLSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVE
                     PVRKVNQRLRAPKHCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPERFQT
                     ALNVCIADTQGRLNREHTPYPQRAHWLALLEAANQVDSGKIAAEYWAQGKAHLIAEQI
                     DRARLAQIAPLQKAFRAAQDKTEKH"
BASE COUNT         4854 a         5756 c         5579 g         5127 t
ORIGIN      
        1 aatttaatcc actataaaat cgaaagcagc caaatcaaag cccatatatt ggcgcacccc
       61 gattacgccg ccttcaaagc cggacacctg gcaaagtttg ccgcgtggca cactcaaaac
      121 gaccttgccg tcatccaacc gggcagccgg ccgggcaggc ttatccggaa atggagcgaa
      181 agcctgctgg acgcgttcaa acccggcagc ctgattgaag aatacgattt ctaccaaatc
      241 ctgacggact actgggcgga aaccctgcaa gacgatgttt atctcatcgc ccaagatggc
      301 tggaaggcgg ttaaaaacct ggccgaaatc accaaagaaa gcgatgaagc cgcgaacctg
      361 accgtcgtct ttgaggaaac cgaaaccggc aaaaaaggca aagccaaaac caagcgcatc
      421 agcaaaaaat accgcagcga agtcatcgcc cccgagctgg ttgcccgccg ctacttttca
      481 gacggcatcg ccaagctgga agaaaaacaa agcgagctgg aacgcctaag ccaagaattg
      541 gaaaaccaca tagaagaaca cggcggcgaa gagggtgcgc tgaacgacgt attggatgca
      601 aaaggcaaac tttccgccaa acttctgaaa accgcattgg aagaaagcgg catagaagaa
      661 ggcgaacggg ctgttttaca aaccacccaa acactgatga cgcaggaaaa agccgcgaaa
      721 gacgcagtca aaacccaaat cgaagccctg aaccttgccg tattcaaaca attcggccga
      781 ctttccgaag ccgaaatcaa gcagcttgcc gttcaagaca aatggcttgc cgatttacaa
      841 agccgaatcg aaaatcgctt ggaaaacagt attcagcagc ttatcagccg cttgaacacg
      901 ctggaagacc gctaccgcag cccgatggcc gagcttgccc gagaagtgga aaagtggcaa
      961 agcaaagtca atgcccacct tgaaaatatg ggttttggag gctgaaatgg cggcacagac
     1021 aggctataag gcgagcgggt tttgagacct ttgcaaaatt ccccaaaatc ccctaaattc
     1081 ccaccaagac atttagggga tcgcggttcg ggtgtccgca ccgcttaata cgtcgtcgtc
     1141 cacgaactga cccatttgct cgaacgccat cgcaacgccc gttttatggc gcatatggac
     1201 aactttctcc caaactggca aagcatcaaa caacagctta atgccttgga gttatttgca
     1261 caaatatata atttaacata atatacatta tgcgaactat cggaaacagt tgtacgtgtc
     1321 cctgtggtct ttccaagtag gaaaattaaa gtatggccaa tgcggctgaa tgtatagccc
     1381 ggagcatccg cgtatccgaa ggtactgaac gacatgccct gcatcccttt cgatgcttcc
     1441 atccagccgg tattgggaaa tacgttgacc ttcaatataa tatacaggca gccgacacac
     1501 aggatatgcc gctgcttttt catcatttct tctgtcaaat ccttggaacg gtcgatttga
     1561 aaacacggct ttacatacgt cccaattctc tttgcagtgc ttggatattt tgctgcctgt
     1621 ccaatacatt gctttgtaat gcatttattt cttgatggtt gatgttgccg ccctttgcca
     1681 gacgtgcttg tgataacatt ttttgggctt cagtcagggc tttgcgttcg ttgctcaatt
     1741 ctgcttcgag aatggagcgt ctgctgttgt ttacaggtgc ttgttgaggc gggggcgtat
     1801 tggattttgc cggcttggat actgttttga ccggggcttt atatttgaca gcctgtccgc
     1861 cgtttgacgg tgatggtgtc ggttcggatg tttggggcgg gatatagcgt tcgctgctgt
     1921 agttgccgat tgggggcaaa tcggttgaga ggcagctttt ggacggcttg gtggtgtaaa
     1981 cggtttctcc gttgattgtg caggtgtaga ttttggccgc attcgcaccc aatgggcttg
     2041 aaatcaggga aaagttgatt aggattaagg ggagttttga tttcataatg tgcttgatgc
     2101 tcggataatt atttgatttt ttggtatttt ttgtaatgct ttcttggcgt tttacgggct
     2161 tttcttttcg gttggttgct tttgattttc tttcggggct ttggcagcct gcttgttctt
     2221 tttcccggca ggttttttgt ttttcttttt actttctatg tgtattttgg cttcttaact
     2281 gagtttttta attttcaggc ggtatccgcc tccctgatgg ctgctgattt taggtaaatc
     2341 cgcatcggcg cacgatcctg ctggggctga tgtatatacg cttttgccat ttgagttgca
     2401 atggtatacg gaggcttgcg ccgccgcgcc ggaaagggac aggagaccca aggcggcaaa
     2461 aagtctgatg tttataccgg taaaaggcgg tgataacgcc cgaattatac cgttattggc
     2521 aggcaaagat aagcaccctg cccgcgcttc tttatcgctc ggcaaactgt ttctcgattt
     2581 cagtttcaat ccgttccaat tcttcttgac aagccagcca aacctcttcg atttgggcaa
     2641 gttgtgtttt gacttttgcc agctgggata aggtattttg caatttttct ttgtttgctt
     2701 caaggtaagc gtcttcttgt gctaaaaatg cttcacatgc cgtctgaatt tcggaaagct
     2761 gcgccatttc tttttcggca cggtctattt tctgctgtat cggcttgccg cgtcgggctt
     2821 tttcctgacg gatttgcgct tcgatgcgct tggtgtcttt gcggctttgg ctttgtgcgg
     2881 atgctgcggg tgcggcggcg gcgttttcct gtgccaaacg ccattggcgg taatcgttca
     2941 aatcgccgtc gaagttcttc agacggcctt tgtcgatcag gaggaagctg tcggtagtcg
     3001 cttcaagcag gctgcggtcg tgcgatacga tgattaaggc gccttggaaa ctttgcagag
     3061 cgagcgtcag ggcgtggcgc atatccaagt ccagatggtt ggttggttcg tcaagcagca
     3121 gcaggttcgg cttttgccag ataatcatgg caagggcgag acgggctttt tctccgccgg
     3181 aaaaaggttc ggttttctgc aacgccatat cgccggcaaa gttgaagccg ccgaggaagt
     3241 ttcggatttc ttgttcgcgt acttcgggag aaagctgctg gatatgccaa acagggtttt
     3301 ggtcggcgcg gatggtatcg agttggtgtt gggcaaaata gccgatattg agtttttcgg
     3361 aacggacgat gctgccggaa agcaaatcga ttttgcccgc caaggctttg ataaaggtag
     3421 atttaccgct gccgttgaca cccaatagcc cgtagcgtgc gccgctttcc agcgacaggg
     3481 taatgtcatg cagaacggtt ttgccttcgt aacccaaatc agcgtgttct agctttaaca
     3541 aaggattggg cagatggtcg ggatggtaaa actcaaagga aaactcgctg tccagatgcg
     3601 cgggcgcaac gcgttctagc tttgccaaag ccttcatgcg gctttgcgct tgaacggctt
     3661 tggtggcttt ggctttgaag cggtcgataa aggattgcag atgtttgatt tgcgcctgct
     3721 gtttgacata ggcagcttgt tgttgcgcga gacgctgcgc gcgttcgttt tggtaaaaat
     3781 cgtaattgcc gccgtattgc gtgagttttt gctgcgataa ttcaatggtt tgggtagttg
     3841 ccgcgttgag aaaatcgcgg tcgtgggaaa tgatgatttg cgtgcagggt aaagaagcaa
     3901 gatggttttc cagccacaag acggtttcca aatccaagtg gttggtcggt tcgtccaaaa
     3961 gcagcaaatc ggcgcggcaa atcagggctt gggcgagatt gaggcgcata cgccagccgc
     4021 cggaaaagga tttgacgggg cggctgtgtt cttcttgcga aaaacccagc ccgttcaaca
     4081 attttgccgc gcgggccggc gcggtataag cgtcgatttc ttccaatttg gcatgatatt
     4141 ccgcctgctt catgccgtca ttttgcgctt ccgcctgcct caatgccgtc tgaaaagcct
     4201 gcaactcggc atcgccctgc aaaacgtaat ccaaagcgga aatatccaaa tcgggcgttt
     4261 cttgggaaac ggaagcgagc cgccagtttt tcggaatcga gacatcgccg ccgtcctgag
     4321 tgattttacc cttgattaag gcaaacaggc tcgatttgcc cgttccgttt ttgccgatca
     4381 aaccgacgcg ctgaccggga ttgacggtag cgttggcttt gtcgagcagg actttcaaac
     4441 cgcgttgcag ggtgaggttt ttgatttcaa tcataacgga aacatcgtcg ggcgggaaaa
     4501 gcccgtattt tacctgaaag tcagtgccga tgccgtctga aacgggaaat ttacggctga
     4561 agccaagccc aagccctgcg cccttccgag tgcaggaaaa ccaatgtcct gaatgccgaa
     4621 tcggtattca tacattccac gccgattccg attcgggaaa aatccgccat gattttggga
     4681 tggataaact cctgagccgc gcccgtcccg ataatcaata tttccggata gtcaacaggt
     4741 ttgatgtcgg acaacaggtt ttccggagtc agatcggaca aggttcggca ttgcgacagg
     4801 cagaccgaat ccttatgtac aagcacgggt ttatggaaac tttgcctcgc cagccggatt
     4861 ccgcccgcac cgcattcata ttccgcaaac tgtccgtcta tcggattttc ttcaaacaac
     4921 atttttttac cccgtcgccg catcatctac accgaaaggg gtgcaaaatc agacaaattc
     4981 atgtaggatt ggcagatttc atctgacccg cctgccgatt tcagacggca tttgattcaa
     5041 agtgcggcac aattatatcg gcagcggata ttttcgtctt tcaatattta catttcagtc
     5101 ggcttacaag gagacacaat gaagccagta aacatcggtc ttttaggttt gggtacggtc
     5161 ggcggcggta cggctgccgt gttgcgggac aacgcggagg aaatttcccg ccgcttgggg
     5221 cgcgaaatcc gtatttctgc cgtgtgcgat ttgagtgaag aaaaagcccg acaaacctgc
     5281 ccgtccgcag cctttgtcaa agatccgttc gaactggtcg cacgtgaaga cgtcgatgtc
     5341 gtcgtcgaat tgttcggcgg taccggcatt gccaaagatg cggtgttgaa agccattgaa
     5401 aacggcaaac acatcgttac cgccaacaaa aaactgctcg ccgaatacgg caacgaaatc
     5461 ttcccgctgg cggaaaaaca aaacgtcatc gtccaatttg aagcggcagt agcgggcggt
     5521 atcccaatca tcaaagccct gcgcgaaggt ttggcggcaa acaggattaa atccatcgcc
     5581 ggcattatta acggcaccag caacttcatc ctctccgaaa tgcgcgaaaa aggcagcgcg
     5641 tttgccgatg tactgaaaga agcgcaggca ttgggttatg ccgaagccga tccgaccttc
     5701 gacatcgaag gcaacgatgc gggccataaa atcaccatca tgagcgcact ggcattcggc
     5761 acgccgatga acttttccgc ctgctacctc gaaggcatca gcaaactcga cagccgcgac
     5821 atcaaatacg ccgaagaact tggctatcgc atcaaactgt tgggcattac ccgcaaaacc
     5881 ggcaaaggca tcgagctgcg ggtccaccct accctgattc ccgaaagccg cctcttggca
     5941 aacgtcaacg gcgtgatgaa cgccgtgcgc gtcaacgccg atatggttgg cgaaacctta
     6001 tattacggcg cgggcgcggg cgcattgccg accgcttccg ccgtggttgc cgatatcatc
     6061 gacatcgccc gcctggttga agccgatacc gcccaccgcg taccgcatct ggcgttccaa
     6121 cccgcgcaag tccaagcgca aaccatcctg cctatggacg aaattaccag cagctactac
     6181 ctgcgcgtcc aagccaaaga cgaaccgggc acgctggggc aaatcgccgc gctgttggca
     6241 caagaaaacg tctccatcga agcactgatt caaaaaggcg tgattgatca gaccactgcc
     6301 gaaatcgtga ttctgaccca cagcacggtc gaaaaacaca tcaagtcggc aatcgcagcc
     6361 atcgaagcac tggattgcgt ggaaaaaccg attaccatga tccgcatgga aagcctgcat
     6421 gactgagccg aaacacgaaa tgccgacgga agagcaggtt gccgcgcgca aaaaagcaaa
     6481 agccaaaatc cgcaccatcc gcatttgggc atgggtcatt ttggcgttgc tcgctttaac
     6541 cgccctgctc tcccaatgcg cgatgtccaa accgcaggca aaacagaaaa ttgtcgagtc
     6601 ttgcgtgaag aatattccgt ttgccgaaaa atggcaaaac gatttgcggg cccgcggttt
     6661 agattcaaac aatacccgcc tcgccgtcga ctactgcaaa tgtatgtggg agcagccttt
     6721 ggacagattg agcgagaaac agattagatc cttcggcaaa ctcggcgcac aagaacagct
     6781 tgacctgctc ggcggcgcaa atgcctttga agcacgtgac aagcagtgtg ttgccgattt
     6841 gaaatcagaa taatgtggac cgataaaaaa gccgattctt taaagaatcg gcttttttca
     6901 taaaaaacgg cttacagtgc gtctttcaat gctttacctg cacggaattt aggcgttttg
     6961 gcggcggcaa tggtcagagg ctcgccggtt ttggggttgc ggccttggcg ttccgcacgt
     7021 tcgcccacgt agaaagtacc gaaaccgacc aaagtaacgg tgtcgccttg tttcagggcg
     7081 gtggttactg cattggtagt ggcatccaaa gctttttgtg cggcggcttt ggaaatgtcg
     7141 gcttcttgag caatcgcttc gatcaattca gacttgttca caatcagtcc cttcctgtct
     7201 taaaaaatga tgaaatgccc gaatactcgg ggtttgtact gcttgagcaa ctttcgcttt
     7261 atagcaattc tgaaattgcc gtgtcaagca aaaaatacgg aatcacccta tttgacaggc
     7321 tttcaggacg aaaccgcatt tttacaacac atttcctgcg tttcaatgtt tggttgccct
     7381 gctgcggggt tttggttttg aagcggattc cgccgccgct tccacaccag aaggttctgc
     7441 ccaaggctca ggctggcttt ccaaacccag agccaatacc tcgtctatcc atttgaccgg
     7501 atggatggtc aggccggttt tcacgttttc agggatttct tccaagtctt tgacgttgtc
     7561 tttcggaatc aggacgtgtt tgatgccgcc gcgaagcgca gccaacagtt tttccttcag
     7621 accgccaatc ggcaggactt cgccgcgcag ggtaatttcg cccgtcatcg ctacatcggc
     7681 gcgtaccggg attttggaaa atgcagacac catcgccaaa gtcatggcaa tgcccgcact
     7741 cggaccgtcc ttcggcgttg caccttcggg aacatggaca tggatgtctt ttttctcgta
     7801 aaaatcagga gccaagccca ctgattccgc gcgggagcgg acaaccgacc atgctgcgga
     7861 cacggattcc ttcatcacat cgcccaactg gccggtgcac tgaatcacgc ccttacccgg
     7921 caatgctgcg gcttcgacgg tcagcagttc gccgccgact tctgtccacg ccagaccggt
     7981 tacttgtccg atacggtttt cgctttcggc aacgccgtaa tcgaagcggc gcacacccaa
     8041 atagtcgtgc agatttttct catttacttt aaccgcttta ggtttggctt tgctggtttt
     8101 cttggtttca gacaacctct tcttatcttc gtccaaggta atctgcatca ccaccttgcg
     8161 gcagattttg gcaatctcgc ggtcgagcga acgcacgccc gcctcgcggg tgtagtaacg
     8221 gataatatcg cgcaccgcgc tttcttcgat tgccaattcc ccttctttca cgccgttgcg
     8281 cttcatttgc ttcggcacga ggtactgcat cgcgatattg attttttcgt cttcggtata
     8341 gccggacaga cggatgattt ccatacggtc gagcagcggg gtcgggatat tcaggctgtt
     8401 tgaagtcgca ataaacatca catcgctcaa atcgtaatcc acttcggcat aatgatcggc
     8461 aaacttgttg ttttgttcgg gatcgagcac ttcgagcaac gcgctggcgg gatcgccccg
     8521 gaagtcgttg cccaatttgt cgatttcgtc gagcaggaac aatgggtttt ttacgccggc
     8581 ttttgccata ttctgcagaa tcttaccagg catagagccg atataggtgc ggcggtgtcc
     8641 ccggatttcg ctttcgtcgc gcacgccgcc caaagccatg cggacatatt tccgccccgt
     8701 tgctttggcg atggattcgc ccaaagaggt tttacctacg cccggagggc cgaccaggca
     8761 cagaatcggg cctttgagtt tgtccatacg tttttggacg gcgaggtatt ccaaaatccg
     8821 ttctttgact ttttccaggc cgtagtggtc ggcatccagc accagtccgg ctttggcgat
     8881 gtctttgctg acgcgggatt ttttcttcca cggcagctcg agcaaagtgt cgatgtagtt
     8941 gcgtacgacg gtggattccg cagacatcgg cggcatcatt ttgagctttt tcagttcgga
     9001 caggcatttt tcttccgctt ctttggtcat acccgccttt ttgatatctg cttccaaggc
     9061 atccagttcg ccgttttcgt cttcttcgcc cagttctttg tgtatcgctt taatctgttc
     9121 gttcagataa tattcgcgct gggatttttc catttggcgt ttgacgcgtc cgcgtatgcg
     9181 tttttcggcc tgcataatgt cgagttcgga ttccagctgt gccagcagga attccatccg
     9241 tttgccgatt tcgggaattt ccaaaatctg ttggcgttgc gccagtttca actgcaaatg
     9301 cgctgcgacc gtatcggtta gccggctgtt ttcggcaatg ccgttgatgc tgccgatgat
     9361 ttcggcgggg atttttttat tgagtttggc gtattgttca aactgcgcca acagggtgcg
     9421 gcgcacggct tcgaggtcgg tattgccgcc cgtgtcttct tccacgaccg cctctatatg
     9481 ggaaacgaac agcccgcccg tgtcttcgat ggtcagaaca cgtccgcgat acagcccttc
     9541 gaccaatact tttaccgtgc cgtcgggcag tttcaacact tgcaggactt gtgcgaccgt
     9601 accggtctga tacaggtcgg cggcaaccgg ttcttctacc gccgcatcgg tttgcgccaa
     9661 caggaaaacc ggctcctcgc gggtaatggc gttttccagt gcggcgatgg atttcggtct
     9721 gccgacaaac agcggcagaa ccatatgcgg gtaaacgacg acatcccgca aaggaagggt
     9781 tgccaaggcg gcatattcct caaaatgctt ttctttttgt gtcataggta ctctcttgtg
     9841 tctgacagat tgccgatttt cgcgtacatt ggggttgaag gtattatttc aagcatatgt
     9901 ggtttattta tggagtttga tgcgatgccg tctgaaacat tctggcttca gacggcatgg
     9961 gcttggaaag acaaggcagg aacaaaaaac tgttctgtgt tgccgctcct tgctgtacca
    10021 tccgtatggt ttacggttct gccgccctat tttcaaaaca tgacgcaggt atcccatgtc
    10081 ttcttttatt tttcccgata acgggttcga atggcgcaac gaaagtctgc aaaagccgcc
    10141 caaaggttgg cattatgtcc gcgaaagcgg tgcagacggc attttgaagg ctgcctatca
    10201 aaatattgca actgtctggc agggcgattt ccacaatgcc aaacaggtgc tttctgcaat
    10261 gaagaagagg gttcgcaaac ctgccgccgt ccgttccgat gcggatatcg ccgccctttt
    10321 ccatgcccac cgtatgaagc aggcacagca gagccgtatt ctgaatatgc ttgccgttga
    10381 aatccgcccc ggttttgtgt tggacaacaa acgcgcgccc gatatacgct ccgctttgct
    10441 cgacgtgtac ggagaggcgg acggcaaacc gtttttccta ccgctcaatc tgctgctggg
    10501 gtttatgggt gcgcacgagt ggcataagaa aggggttgcc gttccgcagc tgggcggcag
    10561 catacacgtt cctttcggcg tattttcgcc cttgcgcggc gaatatctcg atttgctcgc
    10621 ccaagcgccg tcaacagggt ttcagacggc attggacatc gggacgggtt cgggcgtgct
    10681 tgccgcgata ttggcaaaac aggggattcc ttccgtaata gggacggaca ccaatccgag
    10741 ggcggttgcc tgcgcccggg ccaatatcgc ccggctgggt ttggaaaaac aggttgaaat
    10801 acgggaaacc gatatgttcc ccgatatgcg tgccgatttg attgtctgca acccgccgtg
    10861 gctgcccgcc aagccgactt ccgccgtcga atccgcatta tatgaccccg attctgcgat
    10921 gttggccgcg tttttaaggg atgcgccgaa acatctgaat cccgacggcg aaatccgcct
    10981 gatcatttcc gaccttgctg aacatctgca cctgcgtccg tccgattttc tggataaggc
    11041 atttgctcag gcgggtttgc gcgttgcgga tgttttgaaa accaaaccga ttcacaaaaa
    11101 agctgccgat ccgaacaatc cgctggcttt tgcccgaaac agggaaacta ctttcctgta
    11161 ccgtttgaaa aaggcataag gggcggcggt gcgcttccgg cggcaggcat cggaacgccc
    11221 gcgccgccgg cacgacatca ttcgggcgga ttattcttgt gaaaataccc gctcaagcat
    11281 actgcccaat gccgtctgac gcgttttgac ggtggcggca gcttgccgga aggcttcttc
    11341 cccgccgaag aatacgaact tctccctcgc gcgggtaatg gcggtatata acagctcctt
    11401 actcaatccg gacaatgcat cgtccccttc gtccgaaggt gcggcggaag gcggcagcag
    11461 ccagacttcc cgatattccg aaccttggct tttgtggacg gtcatggcga atgcgggttc
    11521 aaattcgggc aggcagctta ccgctacctt tttaaatccg tccgcatcgg caaaataggc
    11581 ggcaaggctg ccctgccgtc cgacatcttc cataatcagt ccgatgtcgc cgttgaacag
    11641 ttcaagcgcg tagtcgttct gtctgatcat aatcggttct ccggcgaaat aggcctgatg
    11701 ttccggtatg ttcattttgc ggcgtacatg gcggcaatag gcttcgttga agtcttccga
    11761 atcctgccgc caagctgcca gaaccacgat atccgagatg cccacgtatg cggcttcgat
    11821 attgccgtct tttaccgcct gccaataggc tttgtgtgcc cggtacaacc tttcgacttg
    11881 agcgttcgga ctgcattccg aatgttccag ttcgtccgga aaccggtcaa acaatgccca
    11941 cgccccctca tcgcccgata cggcggcacg ggcaaggcag ccgatgccgc tgttgtcgcc
    12001 gaagcggtgg ctgaacgaca gatgggcggt gttttgcgcc agcacgggag catcttcgtg
    12061 taccggaaat ccgtgttcgg gcaggtagag gttcaaactt ttatacgttt ctctgtccaa
    12121 aatggttttt tgcgacaaaa cggacagcac cgccccgatt ccgacggacg ggagctggtt
    12181 ttcatccccc agcagaatca cgcgcgcgcc ggttttgacc gctttcaaaa gttgcagcat
    12241 caatgcggta tccaacatgg aggcttcatc gacaatcagc acatcgaacg gcagcggacg
    12301 gatatggtcg aacgccgcct gcattttggg cgggcgcagc ttcagcaatc ggtggacggt
    12361 ttgcccttcc agtttgagca aatggcggcg gacggcctcc ggcgcgtcaa aaccgttgat
    12421 tgcacggtgc agcgcgcgcg ccatatgtgc cgccgctttg cctgtcggtg cggcaagcgc
    12481 gatgttggga agattttcgt cttcaccgca aatcagcgcc agcagtttgg caaccgttgt
    12541 cgttttgccc gttcctggcc cgccggtaat caccataaaa gactgcaaca gtgccaaggc
    12601 ggcggcatcg cgctgccctt cgctgcccgt gccttgaaac cattttgcga ggttttgccg
    12661 cgcgcctgcc gcgtcggggg cggacgtgcc ggctgccgcc aagcgtttta tctcggcagc
    12721 caaatcgtat tccaactgcc acatcctgcc caaaaacagc cttctgcctt ccaaaatcaa
    12781 aggcgcggcg gatgttccga ccacgggtgc gagtgccgac agcgcgtcag cctcgccacc
    12841 gctcaaacgg ataaacgaat gaccgttttg caatgcctga aacaggcgtt cggtgcagtt
    12901 tgcaagcact tcgtcgccgg aacccgcata gtgttccaaa aaacggattg ccgcccttgc
    12961 cgccgcttgg gcaaattcat ctgtctgccg ttccattgta ttccttgtcg aaatgccgtc
    13021 tgaaggcgcg aggcttcaga cggcgcgtgt tgtttcggct gtttaggcat ttgcgccctg
    13081 tttggggtgc aggctgccgt ctttcatgac catcacgcgc ccgaagcagc cggcgagttc
    13141 gtcgtcgtgc gttacgacca ccagccccgt tcccaattct gttttcagtt ccagcatcat
    13201 atccaaaaca ttcctggcgt tcgcacggtc gaggttgccg gtcggttcgt cggcaagcag
    13261 gcattttggt tgcgtaacca aggcgcgcgc aatggcggca cgctggcgtt cgccgccgga
    13321 cagttcgccc gcgcggtgcc tcgaacggtg tttcagtccg accttttcca gcatcgccat
    13381 tgccgtttct gctgcctctt cacggctttt tttgccgatc agaagcggca tcatcacatt
    13441 ttccagtgcc gaaaattcag gcagaagatg gtggaactgg tacacgaaac cgagatggcg
    13501 gttgcgcagg gtgcccagtt gccgctggct taatgtacgc aaatcctcgc ccatcagcag
    13561 caccctgcct tcagacggca tatccagccc gcccaaaata tgcagcagcg tcgatttgcc
    13621 gctgcccgaa gaaccgatga tgccggtact ttcccccgcg aggatttcca aatccaagcc
    13681 gtgcagcacc cgaacgtcca aaccgccgtc acggtagcgt ttgcccacgc cttcgcattt
    13741 caaaatcaac tcactcataa cgcaaagcct ccgccggttg ggtttttgac gcgcgccagc
    13801 tcgggtagag cgtcgccacg aaagacagtc ccaaagaaat gcaggcaatc agggcaacgt
    13861 cgcccatatc gacatcgctg ggcaggtagt cgataaaata aacctgcgaa ttgatgaggt
    13921 ggacaccgag caggttttca aaaaacgcca cgaccctgcc gacgttccaa cccaaaagca
    13981 cgccgcagac cacacccgcc agcgtgccga aaaagcctga aaacgcgccc tgcaccataa
    14041 aaatcttcat cacgccgcca ggggaaagac ccaaagtccg taaaatcgca atgtccgcct
    14101 gcttttccgt aaccgccatc accaaggaag agacaaggtt gaacgccgcc acggcgataa
    14161 tcagcgtcag gatgatgaac atcatccgtt tttccaactc gaccgcctca aaatagctgc
    14221 ggttgttgta cgtccaatcg cgcacccaaa ccgcgtccct ttgcgcctcc ggaatcagtg
    14281 ttgccgtcaa ggcgggggcg ttttgcgggt cggcgagttt cagccgcagc cccgcaactt
    14341 ccttatccaa gcggtacagt acgcgcgcgt cttggatatg cgtcatcgcc aatgagttgt
    14401 ccacttcgta aacgcccgtc ttaaccagac cgaccacggt aaactgcttc aggcgcggca
    14461 cgactccggc aggggtaacg ttgccctccg gcgtgatgac ggtaacttta ttgccgactt
    14521 ccgcccccaa agcctccgcc aagccgacac cgaggataat gtcaaactcg cccggaatca
    14581 ggtcttcaaa tttgcctgcc ggcattttgt cgccgtattc caccactttg cgctcttcag
    14641 acggcaaaat gccgcgcatc tgcacgcccc tgatttcgcc cgcattggcc agcaatgcct
    14701 gattggaaac atagggcgcg gcagccaaaa tacctttgcg gttttcggta aaccgaagca
    14761 ggttgcgcca atccgtatcc gtattgtcga tatagccgat ttcggcgtgc ggcgcgacat
    14821 tcaggagctg cccgcgtatt tctttctgaa agccgttcat aaccgacaag acgacaatca
    14881 gcgcggttac gcccaaggcg attccggcaa tcgaaaccat cgtgataaac gacataaagc
    14941 cgttgcgctt tttcgccctg agatacctca agcctatcca agcctctaga gaaaacataa
    15001 cgctacctta aaaatgtctg caaacgtgcc gccccggacg gcggtttggg ggcggcggca
    15061 aaagtttatt gtaccgtaaa accccggcag cgtccgaacg cccgagtgcg ggggacgggg
    15121 cggcagagcg ggcggaaaac ttgcacaacg cgtcaaactg ccctatcctt tccttcagaa
    15181 aaaccgtttc ttgaggaaaa caatgaatat ccgaactgct tttgctttgt gcgccatcgc
    15241 cttatccgcc gctgcggctg cctacgccaa agaaatcaaa atcgatgcca acaacacgcc
    15301 ttattccgaa gccgacgcgc aaaagctggc ggcaacggca gtcggtatgg gtgttaagga
    15361 acctatcagc ctgaacggcg gcagcggcag cattaccgtg tccggcagca gcgcgacgca
    15421 gtgcgtgttc aaagtcggca acggaggcgc gttgcagatt caagggctaa actgcaagta
    15481 aaccgcccgg aaaaatgccg tctgaaggct tcagacggca tttttcattg gcggcgttat
    15541 gccccgcctt ctttaatcag gcggcgttcg tacaccgcct gcgccagcgt tcccgcatcg
    15601 acatattcca attcgccgcc caagggaatg ccctgcgaca gcctgctgac tttgtaaggc
    15661 aggtttttaa aaaactcgga caggacatac gccgtcgcat tgccttctgc ggtaaaagcg
    15721 gttgcaataa tgatttcttc gacttccccg ccgcccagcc gttgcgccag cctgtccaat
    15781 gcgatggcgg atacgtccat tcccaatgcc gtattgattt gccccatcag gacgaaatac
    15841 agcccgtcgt ggcagtttgc cgcttccata ttcgacacgt cggcaggcat atgcaccacc
    15901 atcagccgcc gcccgtcgcg tgtttcatcg gcacaaatat cgcacaatcc gccttcgcaa
    15961 aacgtgttgc acatcgcgca atggtaaacc tgcttcaatg ccgtctgcaa ggcatccacc
    16021 agtttttcag cctctttgcg cttgtgttgg agcaaatgat acgctatccg ctgtgccgat
    16081 ttcggcccga cgttgggtaa aaccttcagc gcgtcgatca atccttggaa ggcatcttgt
    16141 tttttgtggc tcatcatatt ccgccgtatg ggaaaacggc cggaatattc cgaccgttat
    16201 tttgtcaaca aaagtgtcaa ttactgaccg tcgccgttgt cgaccgattg cgctcctttg
    16261 gtctgtttga ttttgccgtt gaaataacgt atcaacaagt cgaaagtatt ggcagactgc
    16321 tgttgcgcca aagcctgttt tgcaagcgga agctgtgcgg cgatatcatc cggcggggtt
    16381 acagcctgta cttcgacaat cacgggtgcc ggcagaccga tcagcctgac gtaggcgggt
    16441 ttgccgtttg ccggttttgc tttcagcagt tccgcataag cctcgggcgg catggactgc
    16501 cttgcctgct gcgcgcccaa aacggacact tccgaccatt tcacgtcaac agccttgccg
    16561 ccgttcagtt gggtaagcac gtcttttgcc ttgttttcgg caagtttggc ggcttcggta
    16621 cggatataag cctgacgtac cgcgtctttg gcttcggcaa acggcagggt tttctcttcg
    16681 cggacttctt tggcgcggac gacccacgcg gtttcgctgt tgatggtcag cacttcggaa
    16741 ttgtgttttt tcttcaatac gtcgtcgctg aatacggcat tgatcaggtt ttcgggcata
    16801 ccagacattt gcgcatcctg cctgctcagc caagtttctt gggtttcgac tttcaaaccg
    16861 ctgtttttgg cggcttcggc aagcgaggaa ggatggttga acgcgtcatc gcccagcttt
    16921 tcttttgcct tattgaagtc ggcaaccgcc tttttcattt tcaattcgtt ttcgacggcg
    16981 gctttttcct gctcgaaaga aggtttggct tcatttgtcg gcaaacgcgc cacgcgctct
    17041 tcaaacgcat ttttcacttc cgtttcactg acggtctgtt tgtctgcaaa atccttcaga
    17101 ttcaaggcga catattctaa tttgaccgcc tgcggcagca gatagtcttt tttgtttgcg
    17161 ttataaaact tctgcaaatc ggcttcagac actttgactt gggcgatgaa ttcgtcgggg
    17221 ttgaaagtgt gcgaacggat ggtgcggttg acctgcgtca gcctgatcag ctgttccgcc
    17281 tgcgcgtcgc cgaccaatac gccgttttgg acgaggttta ccaaattctg caaggcaaac
    17341 tgatcgcgga tttcttcgac aaactggtct tcagacatat ggcgttggga aaggtagcgg
    17401 tttaaaagcg cgtggtcgaa tttgccgttt gcgtcgtgga aattgggatc gtccacgata
    17461 atttgcttga tttgttcgga agaaaccgaa atgcccatca gcttcgcgcc ctgtttcagg
    17521 taggcgcgtt gcagcaggga ttggaacacc gcgtcgcgcg aagggccgcc gccgcccgcc
    17581 tgttcgtttt ggacggcggc gttaagcgac tgctcgctga ttttttcgtc gcccacttgg
    17641 acgatgtagt cgacacccgg atgggatacc gtgctgaccc cgaagccgac gaaggtcaat
    17701 gcaatcaggc ctaataagac ttgggcgggc gttctgtatt tttcgatgga atggaacata
    17761 ttttaaatcg ggatatagaa tgggaacggg aaattcaagt cgggtattgt aacggttttt
    17821 atccctgtct gcacggggct tgccggttga agatgccgtc gtaggtttct tcgctgaagc
    17881 cggcgtaaac cttgccgccg cactccaata cgggacgctt gatcaggctc ggcatttcgg
    17941 acatcagttt gacggcctcc actgtcgaga acagggcttt ttgctgtgtt tcggcatcga
    18001 gtttgcgcca gcttgtcccg cgtttgttga gcagggttgc caaaggcact tgttccagcc
    18061 acgagcagat ttccgcttcg gacggcctct gttttttaaa atcccgaaat tcaaactcca
    18121 agccgtatcc ggcaagcctg tttttggctt ttttgactgt gtcgcaattt ggaatgccgt
    18181 gaaggattat catttggaaa ccttttgtct gaaataataa aacggatatt ttactataag
    18241 tgtctgaaaa tttgcccgtc tgtttcagac ggcggggcgg ttatgttaca atccgaaaat
    18301 tcgaaaaatt taatctcttg ttcaataaag gctttaccaa tcatgatttc taccaacggc
    18361 atcaccatgc agttcggcgc gaagccgctg tttgaaaatg tatccgttaa attcggcgaa
    18421 ggcaaccgct acggtttgat cggcgcgaac ggctcaggca aatccacctt catgaaaatc
    18481 ctcggcggcg atttggaaca gacgaccggc gaagtggcga ttgaaaacgg cgtgcgtttg
    18541 ggtaaattgc gccaagacca gtttgcctac gaagacatgc gcgtgctgga cgtggtgatg
    18601 atggggcata ccgaaatgtg ggcggcgatg accgagcgtg atgcgattta cgccaatccc
    18661 gaagccaccg aagacgacta catgaaagcc gccgaactgg aagccaagtt cgccgaatac
    18721 gacggctaca ccgccgaagc gcgcgccgcc gagttgttga gcggcgtagg catttccgaa
    18781 gatttgcaca atgcgaccat ggcagaagtc gccccgggct tcaaactgcg cgtattgctg
    18841 gcgcaagccc tgttctccaa accggatgta ttgctcttgg acgaaccgac caacaacttg
    18901 gacatcaata ccatccgctg gttggaaggc gtgttgaacc aatacgactc cacgatgatt
    18961 atcatctcgc acgaccgcca cttcttgaac gaagtctgca cgcatatggc agatttggat
    19021 tacaacacca tcaccatcta tccgggcaac tacgacgact atatgctcgc ctccgcccaa
    19081 tcgcgcgaac gcgccctgaa agacaatgcc aaggcgaagg aaaaattgca ggaattgcaa
    19141 gaatttgtgg cgcggttcag tgccaacaaa tccaaagccc gtcaggcaac cagccgtctg
    19201 aaacaggcag acaaaatcaa atcggagatg gtcgaggtca aaccctctac ccgtcaaaac
    19261 ccgtatatcc gttttgaagc cgatgaaaaa gccaagctgc accgtcaggc tgtggaagtt
    19321 gaaaaactgg cgaaacgctt tgaaacccag ttgtttaaaa acctgaactt catccttgaa
    19381 gcgggacaac gcctcgccat catcggcccg aacggcgcgg gcaaatccac cctgctgaaa
    19441 ctcttggccg gcgcgtacaa ccccgaatat tcagacggtc tgctgccgga cgaaggcagc
    19501 atcaaatggg cggaaaaagc cagcgtcggc tactatccgc aagatcacga aaacgacttc
    19561 gatgtcgata tggatttgag cgaatggatg cgccaatggg ggcaggacgg cgacgacgaa
    19621 caagtcatcc gcggcacttt ggggcgtttg ctcttcggca gtaacgatgt cgtgaaaaaa
    19681 gtgaaggttc tctccggtgg tgaaaaaggc cgtatgcttt acggcaaact gttgctgttg
    19741 aaacccaatg tcttagtcat ggatgaaccg accaaccaca tggacatgga aagcatcgaa
    19801 tccttgaaca tggcgctgga aaaatacaac ggcacgctga ttttcgtctc ccacgaccgt
    19861 cagttcgttt cttccctggc tacccaaatc attgaattgg acggcaaagg cggatatgaa
    19921 cactacttgg gcgattacga aagctatctc gagaaaaaag gcgtagcata accgccggtt
    19981 ggaacaatgc cgtctgaagc ggcttcagac ggcattgttg ataactttaa aataggaagc
    20041 atatgcagac ttatctcgtc ggcggtgccg tccgcgatta tcttttgggc ttgcccgtca
    20101 aagaccgcga ttgggtggtc gtcggcgcag acgcacaaac catgctggcg caaggcttcc
    20161 agccagtcgg caaagacttt cccgtgtttc tccatcccga aacacacgaa gaatacgccc
    20221 tcgcccgcac cgagcgcaaa accgccaaag gttacgtcgg tttcagtttc cacgccgaca
    20281 aagacgttac gctggagcag gatttgatgc gccgcgacct gaccatcaac gcgatggcgc
    20341 aagatgcgga cggcaagatt atcgaccctt tcggcggaca acgggatttg gcggcaggca
    20401 ttttgcgcca cgtttcccca gcctttgccg aagaccccgt ccgcatcctg cgtactgccc
    20461 gctttgccgc gcgttacaag tttgaaatcg ccgaagaaac cataaagctg atgcggcaga
    20521 tggtggaaaa cggcgaagcg gacgcattgg ttgccgaacg cgtctggcag gagtttgcga
    20581 aaggtttgat ggaaaaaaat ccgcgcaaaa tgattgaagt gttgcgcgaa tgcggcgcgc
    20641 tcaaagtctt gctgcccgaa gtcaatgccc tcttcggcgt gccgcaacgc gccgactacc
    20701 atcccgaaat cgacagcggc atccataccc tgatgacgct gcaacgcgcc gccgatatgg
    20761 gtttgagcct gcccgaacgc tatgccgccc tgctgcacga cttgggcaaa gccaaaacac
    20821 cgtccgacat cctgccgcgc caccacggac acgacctcgc cggtgtcgaa cccgtgcgca
    20881 aagtcaatca aaggctgcgt gcgccgaaac attgtgccga gcttgccgaa ttggtttgcc
    20941 gttggcacat tattttccac caagtcggac agcttaaaag ccaaaccatt ctgaacgtat
    21001 tgaaaaaaac cgacgctttc agacgacccg aacgctttca gacggcattg aacgtctgca
    21061 ttgccgacac gcaaggccgt ctgaaccgcg aacacacgcc ctacccgcaa cgcgcgcact
    21121 ggctcgccct gctcgaagcc gccaatcagg tagattcggg caaaatcgcc gccgaatact
    21181 gggcgcaggg aaaagcgcac cttatcgccg aacaaatcga ccgggcgcgg ctggcgcaaa
    21241 tcgccccgct gcaaaaagcg tttcgagcgg cgcaagacaa aacagaaaaa cattaaaacg
    21301 cccaatgcag ccactt
//
LOCUS       DAXHPV010000021        20691 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.021, whole genome shotgun sequence.
ACCESSION   DAXHPV010000021 DAXHPV010000000
VERSION     DAXHPV010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 20691)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20691)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20691
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.021"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(63..239)
                     /locus_tag="ACFM6C_000547"
     CDS             complement(63..239)
                     /locus_tag="ACFM6C_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158048.1"
                     /translation="MKSRRFFKALLLIAALVGAFYAGMQTQAYLYEDLCLDLGGGKNP
                     GSYPICVIEKVPAR"
     gene            complement(242..1600)
                     /gene="murF"
                     /locus_tag="ACFM6C_000548"
     CDS             complement(242..1600)
                     /gene="murF"
                     /locus_tag="ACFM6C_000548"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0047480 -
                     UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HFC6158049.1"
                     /translation="MKPLDLNFICQALKLPMPSESKPVSRIVTDSRDIRAGDVFFALA
                     GGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALKVDDTLTALQMLAKAWRENVNPF
                     VFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAV
                     IEMGMNHFGELAVLTQIAKPDAALANNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDG
                     MALIPQEDANMAVFKTATLNLNTRTFGVDSGDVHAENIVLKPLSCEFDLVCGNERAAV
                     VLPVPGRHNVHNAAAAAALALAAGLSLDDVAEGLQGFSNIKGRLNVKAGIKGATLIDD
                     TYNANPDSMKAAIDVLVRMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAY
                     FVGDNSVEAAEEFGADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALE
                     DK"
     gene            complement(1725..2960)
                     /locus_tag="ACFM6C_000549"
     CDS             complement(1725..2960)
                     /locus_tag="ACFM6C_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HFC6158050.1"
                     /translation="MYRGGVFADVKNYKRRSKIWLTILLTLILSCAVMDKIASDKDLR
                     EPDAGLLLNIFDLYYDLAFAPAQYAAKRAHILEAAKKVSTWHIRHVAPKYKNYVVVIG
                     ESARSDYMNVYGFPLPDTPFLSQTKGLLINGYQSTAHATNLSLPQTLGLPGEPNNNIV
                     SLAKQAGFRTAWLSNQGMLGHFANEISTYALRSDYPWFTQRGDYGKSAGLSDRLLLPA
                     FKRVLIGNAGTKPRLIVMHLMGSHSDFCTRLDKDARRFQYQTEKISCYVSTIAQTDKF
                     LEDTVKILNENKESWSLVYFSDHGLMHVGKGGERTLTHGAWKRQSYGVPLVKISSDDT
                     RREMIKVRRSAFNFLRGFGSWTGIETDELPDDGYDFWGNVPDVQGEGNNLAFIDGLPD
                     DPAPWYAGKGKSTKNTSKK"
     gene            complement(2935..3372)
                     /locus_tag="ACFM6C_000550"
     CDS             complement(2935..3372)
                     /locus_tag="ACFM6C_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158051.1"
                     /translation="MKQSARIKNMDQTLKNTLGICALLAFCFGAAIASGYHLEYEYGY
                     RYSAVGALASVVFLLLLARGFPRVSSVVLLIYVGTTALYLPVGWLYGAPSYQIVGSIL
                     ESNPAEAREFVGNLPGSLYFVQALFFIFGLTVWRYCVSGGGIC"
     gene            complement(3395..4873)
                     /locus_tag="ACFM6C_000551"
     CDS             complement(3395..4873)
                     /locus_tag="ACFM6C_000551"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HFC6158052.1"
                     /translation="MFSKLTPLAETNIPPLLCANAAGRLLHSDSRQIKQGDIFVACPG
                     EYTDGRSYIPAAIANGAAFVFWDDDGKFAWNPEWKVPNQGIKDLKHRAGMLAAQVYGN
                     VSDDLKVWGVTGTNGKTSITQWLAQAADLLGGKTAIIGTVGNGFWGELEETAHTTPAP
                     VDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRDHLDYHGTMEA
                     YGAIKSRLFYWQGLQHAVINIDDGYGAELVCRLKKDRPDLAVYSYGFSERADIRITDF
                     TASSDGIAAVFQTLWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLDVLAKIR
                     PASGRMDCIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRG
                     KRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVE
                     QAAANDIILIAGKGHENYQDVQGVKHRFSDLEIVGQALLTRK"
     gene            complement(4898..6646)
                     /locus_tag="ACFM6C_000552"
     CDS             complement(4898..6646)
                     /locus_tag="ACFM6C_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan D,D-transpeptidase FtsI family
                     protein"
                     /protein_id="HFC6158053.1"
                     /translation="MLIKSEYKPRMLPKEEQVKKPMTSNGRISFVLMAMAVLFAGLIA
                     RGLYLQTVTYKFLKEQGDNRIVRTQTLPATRGTVSDRNGAVLALSAPTESLFAVPKDM
                     KEMPSAAQLERLSELVDVSVDVLRNKLEQKGKSFIWIKRQLDPKIAEEVKALGLENFV
                     FEKELKRHYPMGNLFAHVIGFTDIDGKGQEGLELSLEDSLHAGEGAEVVLRDREGNIV
                     DSLDSPRNKAPQNGKDIILSLDQRIQTLAYEELNKAVEYHQAKAGTVVVLDARTGEIL
                     ALANTPAYDPNRPGRADSEQRRNRAVTDMIEPGSAIKPFVIAKALDAGKTDLNERLNT
                     QPYKIGPALVRDTHVYPSLDVRGIMQKSSNVGTSKLSARFSSKEMYDLYHELGIGVRM
                     HSSFPGESAGALRNWQKWRPIEQATMSFGYGLQLSLLQLARTYTALTHDGVLLPVSFE
                     KQAVAPQGKRIFKASTARQVRELMVSVTEPGGTGTAGAVDGFDVGAKTGTARKLVNGR
                     YVDNKHVATFIGFAPAKNPRVIVAVTIDEPTANGYYGGVVTGPPFKKIMGGSLNILGV
                     SPTKPLTNVAAVKTPS"
     gene            complement(6707..6970)
                     /gene="ftsL"
                     /locus_tag="ACFM6C_000553"
     CDS             complement(6707..6970)
                     /gene="ftsL"
                     /locus_tag="ACFM6C_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HFC6158054.1"
                     /translation="MNKLNFLLLLAVCVSAFSVVMQQNQYRLNFTALDKAKKQEIALE
                     QDYAQMRLQQARLANHEAIRAAAEKQNLHPPVSGNTFMVEHQR"
     gene            complement(6994..7953)
                     /gene="rsmH"
                     /locus_tag="ACFM6C_000554"
     CDS             complement(6994..7953)
                     /gene="rsmH"
                     /locus_tag="ACFM6C_000554"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HFC6158055.1"
                     /translation="MSETESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLIL
                     SRLGDAGRLIVFDKDPRAIAVAEELARSDKRVGVVHGGFASFQTALDGLGIGKVDGAL
                     FDLGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGE
                     ERFSRQIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQDPATRTFQAVRIFINRE
                     LEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADL
                     PEPPLKIVGRALKPGEAEIAANPRARSAVLRVAERTAGPIPEQ"
     gene            complement(7950..8405)
                     /gene="mraZ"
                     /locus_tag="ACFM6C_000555"
     CDS             complement(7950..8405)
                     /gene="mraZ"
                     /locus_tag="ACFM6C_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HFC6158056.1"
                     /translation="MFGGAHELSIDSKGRLAVPAKFRDILSRLYTPAVVVTLESKHKL
                     LMYPVAEWEKVAAQLLNLKVADNPVLRRFQNLLLHNAEILEWDSAGRVLLPAGLRKRV
                     DFDREVVLVGRANRLELWGREQWEAEMVQALDDDPGELAFQLSQTDLQL"
     gene            8711..9901
                     /locus_tag="ACFM6C_000556"
     CDS             8711..9901
                     /locus_tag="ACFM6C_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6158057.1"
                     /translation="MSGNPINLHKLTLIMPLPLPSPEARQFSLKLQTLIAEKIGKHGN
                     WIPFSRFMELVLYAPQYGYYTGGSHKIGNTGDFITAPTLTSLFAQTLARQLQELLSQT
                     AGNIYEFGAGTGQLAADLLGSISDGISRYYIIEISPELAARQKNLIQARAPEASQKVV
                     HLTALPEAFDGIIIGNEVLDAMPVEIVRKNEGGSFEHVGVCLDNDRFTYSARPLHDLQ
                     LSALASLYFPQTDYPYTSELHPQQYAFIRTLASRLERGGMIFIDYGFDAAQYYHPQRN
                     QGTLIGHYRHHVIHNPFDFIGLADLTAHVNFTDIAQAGTDAGLDLTGYLPQSHFLLNL
                     GITELLAQVGKTDSPAYIREAAAVQKLIDQHEMGELFKVIAFGKNIGVDWAGFRFGDI
                     CHKL"
     gene            10033..10109
                     /locus_tag="ACFM6C_000557"
     tRNA            10033..10109
                     /locus_tag="ACFM6C_000557"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10067..10069,aa:Met,seq:cat)
     gene            10117..10192
                     /locus_tag="ACFM6C_000558"
     tRNA            10117..10192
                     /locus_tag="ACFM6C_000558"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10150..10152,aa:Ala,seq:ggc)
     gene            complement(10483..11304)
                     /locus_tag="ACFM6C_000559"
     CDS             complement(10483..11304)
                     /locus_tag="ACFM6C_000559"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HFC6158058.1"
                     /translation="MDFLIVLKALMMGLVEGFTEFLPISSTGHLIVFGNLIGFHSNHK
                     VFEIAIQLGAVLAVVFEYRQRFSNVLHGVGKDRKANRFVLNLAIAFIPAAVMGLLFGK
                     QIKEYLFNPLSVAVMLVLGGFFILWVEKRQSRAEPKIADVDALRPIDALMIGVAQVFA
                     LIPGTSRSGSTIMGGMLWGIERKTATEFSFFLAVPMMVAATAYDVLKHYRFFTLHDVG
                     LILIGFVAAFVSGLVAVKALLRFVSKKNYIPFAYYRIVFGIAIIILWLSGWISWE"
     gene            complement(11337..11981)
                     /locus_tag="ACFM6C_000560"
     CDS             complement(11337..11981)
                     /locus_tag="ACFM6C_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HFC6158059.1"
                     /translation="MKLKHLLPLLLSAVLSAQAYALTEREDYLVLDKPIPQEQSGKIE
                     VLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVVWQPEMLGLARMAAAVNLSGL
                     KYQANPAVFKAVYEQKIRLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQK
                     LTEQYGIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK"
     gene            complement(11984..12829)
                     /gene="ftsN"
                     /locus_tag="ACFM6C_000561"
     CDS             complement(11984..12829)
                     /gene="ftsN"
                     /locus_tag="ACFM6C_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HFC6158060.1"
                     /translation="MNKFSQSGKGLSGFFFGLILATVIIAGILFYLNQSGQNAFKIPV
                     PSKQPAETEILKPKNQPKEDIQPEPADQNALSEPDAAKEAEQSDAEKAADKADEVEEK
                     ADEPEREKSDGQAVRKKALTEEREQTVGEKAQKKDAETVKKQAVKPSKETEKKASKEE
                     KKAEKEKVAPKPTPEQILNSGSIEKARSAAAKEVQKMKTPDKAEATHYLQMGAYADRR
                     SAEGQRAKLAILGISSKVVGYQAGHKTLYRVQSGNMSADAVKKMQDELKKHEVASLIR
                     SIESK"
     gene            complement(12935..14431)
                     /locus_tag="ACFM6C_000562"
     CDS             complement(12935..14431)
                     /locus_tag="ACFM6C_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HFC6158061.1"
                     /translation="MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKE
                     SRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGRFDLPIAIGILAASGQVAPEKLA
                     EYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
                     GEVAAHLNGIEPLVQTDCQVPQMPSENTKLLDLVDVKGQHTARLALEIAAAGGHSLLM
                     MGPPGTGKSMLSQRLPGILPPLTEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSAS
                     AAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPLENGEIHISRAARQA
                     VYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSL
                     SAVELMQQEAGESSASVLERVIAARDKQYARQGKVNAALSVSELDSQARIQKEAQEAL
                     GSLLEKLSLSARSFHRIMRVARTLADLAGDEEVGRSHVMKAIGFRRAL"
     gene            complement(14445..14765)
                     /locus_tag="ACFM6C_000563"
     CDS             complement(14445..14765)
                     /locus_tag="ACFM6C_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003763371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HFC6158062.1"
                     /translation="MFGKQLFEEVGSKISETIANSPAKDVEKNIKAMLGGAFNRMDLV
                     TREEFDIQQQVLIKTRTKLAALEARLAKLEAAQNPERAALEAAEAAAEEAVAEIRQQT
                     EAGE"
     gene            15248..16774
                     /gene="putP"
                     /locus_tag="ACFM6C_000564"
     CDS             15248..16774
                     /gene="putP"
                     /locus_tag="ACFM6C_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005298 - proline:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0031402 - sodium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0015824 - proline transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HFC6158063.1"
                     /translation="MNPMYITFAIYLVAVLLIGLAAYFSTRNFDDYILGGRSLGPFVT
                     AMSAGASDMSGWLLMGLPGAIYLSGLNEAWIAIGLLVGAYFNWLLVAGRLRVHTEYAN
                     NALTLPDYFFHRFGAGGHLMKVVSALIILFFFTIYCASGIVAGATLFQSLFEGMTYNQ
                     AMWLGAGATIAYTFLGGFLAVSWTDTLQASLMIFALILTPVMVYLGLGGAEQMSAAIQ
                     SVAAGTGKEYGSLFAGTTVIGIISTAAWGLGYFGQPHILARFMAAESAKSLVPARRIG
                     MTWMALCLAGAVAVGYFGIAYFGANPDKVSSMSGNHERIFIALSTLLFNPWIAGIILS
                     AILAAVMSTLSCQLLVCSSAITEDFYKGFLRKNAQQSELVWVGRLMVLAIAVISILIA
                     SDPNSKVLGLVSYAWAGFGAAFGPIVILSVLWKRITAYGALSGMVAGALTVVVWAEWV
                     KKPAQAAGESGLLTMYEIVPGFIVCLIVAVLVSLFNKEPSRETQERFEKADADYRAAR
                     "
     gene            complement(16864..17031)
                     /locus_tag="ACFM6C_000565"
     CDS             complement(16864..17031)
                     /locus_tag="ACFM6C_000565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158064.1"
                     /translation="MKHFLDSPKFFGGQAASVRPEYGNIVINPQMKYKASNAGRVGAS
                     VSLKMKRVKHK"
     gene            17023..20628
                     /gene="putA"
                     /locus_tag="ACFM6C_000566"
     CDS             17023..20628
                     /gene="putA"
                     /locus_tag="ACFM6C_000566"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0003842 - 1-pyrroline-5-carboxylate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0004657 - proline dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0010133 - proline catabolic process to
                     glutamate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase PutA"
                     /protein_id="HFC6158065.1"
                     /translation="MFHFAFPAQTALRQAITDAYRRNEIEAVQDMLQRAQMSDEERNA
                     ASELARRLVTQVRAGRTKAGGVDALMHEFSLSSEEGIALMCLAEALLRIPDNATRDRL
                     IADKISDGNWKSHLNNSPSLFVNAAAWGLLITGKLTATNDKQMSSALSRLISKGGAPL
                     IRQGVNYAMRLLGKQFVTGQTIEEALQNGKEREKMGYRFSFDMLGEAAYTQADADRYY
                     RDYVEAIHAIGKDAAGQGVYEGNGISVKLSAIHPRYSRAQHGRVMGELLPRLKELFLL
                     GKKYDIGINIDAEEANRLELSLDLMEALVSDPDLAGYKGIGFVVQAYQKRCPFVIDYL
                     IDLARRNNQKLMIRLVKGAYWDSEIKWAQVDGLNGYPTYTRKVHTDISYLACARKLLS
                     AQDAVFPQFATHNAYTLGAIYQMGKGKDFEHQCLHGMGETLYDQVVGPQNLGRRVRVY
                     APVGTHETLLAYLVRRLLENGANSSFVNQIVDENISIDTLIRSPFDTIAEQGIHLHNT
                     LPLPRDLYGKCRLNSQGVDLSNENVLQQLQEQMNKAAAQDFHAASIVNGKARDVGEAQ
                     PIKNPADHDDIVGTVSFADAALAQEAVGAAVAAFPEWSATPAAERAACLRRFADLLEQ
                     HTPALMMLAVREAGKTLNNAIAEVREAVDFCRYYANEAEHTLPQDTKAVGAIVAISPW
                     NFPLAIFTGEVVSALAAGNTVIAKPAEQTSLIAGYAVSLMHEAGIPTSALQLVLGAGD
                     VGAALTNDARIGGVIFTGSTEVARLINKALAKRNDNPVLIAETGGQNAMIVDSTALAE
                     QVCADVLNSAFDSAGQRCSALRILCVQEDVADRMLDMIKGAMDELVVGKPIQLTTDVG
                     PVIDAEAQQNLLNHINKMKGVAKSYHEVKTAADVDSKKSTFVRPILFELNNLNELQRE
                     VFGPVLHVVRYRADELDSVIDQINSKGYALTHGVHSRIEGTVRHIRSRIEAGNVYVNR
                     NIVGAVVGVQPFGGHGLSGTGPKAGGSFYLQKLTRAGEWVAPTLSQIGQADEAALKRL
                     EALVHKLPFNAEEKKAAAAALGHARIRTLRRAETVLTGPTGERNSISWHAPKRVWIHG
                     GSTVQAFAALTELAASGIQAVVEPDSPLASYTADLEGLLLVNGKPETVGISHVAALSP
                     LNSARKQELAAHDGALIRILPSENGLDILQVFEEISCSVNTTAAGGNASLMAVAD"
BASE COUNT         4898 a         5986 c         5002 g         4805 t
ORIGIN      
        1 cgggcctgcg cccgtttgag gttggcttgc cgcccggcaa ggtttcggac ggcttttgca
       61 gattaacgtg cagggacttt ctcaatcacg caaatcgggt aactccccgg atttttgccg
      121 ccacccaagt ctaaacataa atcttcataa agatacgcct gcgtctgcat tccagcataa
      181 aacgcgccga ccagcgcggc aatcaacaat aaggctttaa aaaaacgtcg acttttcatt
      241 ttcacttatc ctccaatgcc tcgaccactt cttccatctg cataaagcgc gaacctttca
      301 ccaacacggt ggcgcgttcg ggcaaatcgt ggcgcaacac ttgaatcaac gggtctttgg
      361 cggcgaacca caaaccgtcc gcgccaaatt cttccgccgc ttcgacgctg ttgtcgccga
      421 caaaataagc cgcttcgatg ccttggtcgc gggcgtacgc gccgacttcg gcgtgcatgg
      481 cggcggcttc gtcctcgccc agttcgccca tatcgcccat cacgaaaata cgcggcgcag
      541 gcatacgcac caacacgtca atcgcggctt tcatactgtc ggggttcgca ttataagtat
      601 cgtcaatcag ggtcgcgccc ttgatgccgg ctttgacgtt cagacggcct ttgatattgc
      661 tgaagccttg caaaccttcc gccacatcgt ccaaactcaa acctgccgcc aaagccagcg
      721 cggcggcggc ggcggcgttg tggacattat ggcggccggg aacaggcagc accacggcgg
      781 cgcgttcgtt tccgcacacc aaatcaaatt cgcacgacaa cggtttcagc acgatatttt
      841 ccgcgtggac atcgccgcta tcgacgccga aagtgcgcgt attcaaatta agcgttgccg
      901 ttttgaagac agccatattg gcatcttctt gaggaatcag cgccatgccg tctgaacata
      961 agcctgcata aatctcgctt ttcgctttgg caatatcgcc cactccgtcg aaaccacagc
     1021 cgacatgggc gcgcagggca ttgttggcca atgcggcatc aggtttggca atttgcgtca
     1081 agaccgccag ttcgccaaaa tggttcatgc ccatttcaat cacggcatag cggtgttttt
     1141 cgtttaattt caataaagtc agcggcaatc caatatggtt gttgaagttg cctgccgtcg
     1201 ccaaaacggc attatcgccg aaacggcggc gcaataccgc agccaacatt tccttcaccg
     1261 tcgtcttgcc gcccgagccg gtaataccga acacaaacgg gttcacattc tcgcgccacg
     1321 ccttcgccaa catttgcaac gcggtaagcg tgtcatcgac tttcaacgcg ccatccattg
     1381 caacgcaatc ttcgcgcgaa accacaaccg ccgccgcacc agcagccaat acgtcttcaa
     1441 caaaatcatg cgcgtcaaac cgcccgcccg ccaatgcgaa aaacacatcg cccgcgcgga
     1501 tgtcgcggct gtcggttacg atgcgcgaca cgggtttgct ttcagacggc atcggaagct
     1561 tgagggcttg gcagatgaaa tttagatcca gtggtttcat atttactttc gttaatattc
     1621 gggcggcgga cacatcggta gcggctgatt tttttatcgc ctgttttgct gtggtaaaac
     1681 acagattatt ttcccattct cattcggcat tttttctgta cgtatcattt tttagacgta
     1741 tttttagtcg atttgccttt tcccgcatac cacggcgcgg ggtcgtcggg cagtccgtcg
     1801 ataaaggcaa ggttattgcc ttcgccctgc acatcgggaa cattccccca aaaatcatag
     1861 ccgtcatcgg gcaactcgtc ggtttcgata cccgtccaac tgccgaatcc gcgtaaaaaa
     1921 ttaaacgcgc tgcgcctcac tttaatcatt tcgcgccgcg tatcatcgga cgaaatttta
     1981 accagcggca cgccgtagct ttgacgcttc cacgcaccat gtgtcaacgt tcgctcgccg
     2041 cctttaccga catgcatcaa accgtggtcg gaaaagtaaa ccaaagacca gctttcttta
     2101 ttttcattca atatcttaac tgtatcttct aaaaatttat cggtttgcgc gatggtggaa
     2161 acatagcagg atattttttc agtttgatac tgaaaccgcc gcgcatcctt atccaaacgt
     2221 gtgcaaaaat cactgtgcga acccatcagg tgcatcacaa tcagccgagg cttcgtgcct
     2281 gcatttccta tcaaaacccg tttgaacgcc ggcaacaaaa ggcggtcgct caaccccgcg
     2341 cttttgccat aatcacccct ttgggtaaac cacggataat cgctgcgtag ggcataggtg
     2401 gaaatttcgt tggcaaaatg ccccaacatt ccttgattag acagccacgc cgtccgaaaa
     2461 cccgcctgct tcgccaagct gacgatgtta ttgttcggtt ctcccggcag ccccaaagtc
     2521 tgcggcagcg aaagattcgt cgcgtgggcg gtcgattggt aaccgtttat caacagccct
     2581 ttggtctgac tcaaaaaagg cgtatcgggc aatgggaaac cgtaaacatt catataatcc
     2641 gaacgcgcgc tctcaccgat aaccacaaca taatttttat acttgggcgc aacatgacgg
     2701 atatgccatg ttgacacttt ttttgctgct tccaaaatgt gggcgcgctt ggcggcatat
     2761 tgtgccggcg cgaaagccaa atcgtaatac aggtcgaaaa tattcaacaa caggccggca
     2821 tcaggttctc gcaaatcttt atcgctggcg attttatcca tcaccgcgca ggacaaaatc
     2881 aaagtcaata atatagtcag ccatattttg ctgcggcgtt tatagttttt tacgtcagca
     2941 aatacccccc cccgatacac aatatctcca aactgtcaag ccaaaaatga aaaataatgc
     3001 ctgcacaaaa taaagcgacc cgggaagatt gccgacaaat tcacgcgcct cggcaggatt
     3061 gctttccaat atcgaaccga ctatctgata agacggcgca ccatacaacc agccgaccgg
     3121 caaatatagg gcggttgtgc cgacgtaaat cagtaaaaca actgaagaaa cgcgcgggaa
     3181 accgcgtgcc aataataata aaaatacaac cgaagccaaa gcacccacgg cagaataacg
     3241 gtagccgtat tcatattcca agtgataacc tgatgcgatg gccgcgccaa aacaaaaggc
     3301 taaaagcgcg caaatgccca atgtattttt taatgtctga tccatatttt ttattcgggc
     3361 ggattgtttc atacgatgcc gtccgaatat cccattattt acgagttaac aaagcctgtc
     3421 cgacgatttc aagatcggaa aaacggtgct tcacgccttg tacatcctga tagttttcat
     3481 gccctttgcc ggcaatcagg atgatgtcgt ttgcggcggc ttgttcaacc gcataacgga
     3541 tggcggcggc acggtcggct tcgacgcatt cgggcgcggg aacggcaggc aggatgtcgt
     3601 tgatgatgtc gtgcggattt tccaaacgcg gattgtcgct ggtgacgacg actttatccg
     3661 cgccctgtac ggctgccgcg cccatcagcg ggcgtttgcc gcgatcgcgg ttgccgccgc
     3721 aaccgaatac gcaccacaaa gccgcaccct gcggtttgat ttcctgcaag gtggcgagtg
     3781 ctttttccaa tgcgtcgggc gtatgggcat aatcgacaac gaccaaaggt ttgccgctgt
     3841 tcatgatgca gtccatgcgc cctgaagcgg gacggatttt tgccagcaca tccaatacat
     3901 tatcaagcgg atagccgttg gcgcacagca aggcgatgca ggcggcgagg ttttgcgcgt
     3961 tgaaccgtcc gagcaggcgc gtgcggcatt tcccttcgcc ccacagggtt tggaatacgg
     4021 ctgctatgcc gtctgaagag gcggtaaagt cggtaatgcg gatgtcggcg cgttcgctga
     4081 agccgtagct gtaaacggcc aaatcgggac ggtctttttt cagacggcat acgagttccg
     4141 cgccatatcc gtcatcgata ttgataacgg cgtgttgcag accttgccag taaaacaggc
     4201 gcgacttgat agcgccatag gcttccatcg tgccgtggta gtcgaggtgg tctcgggtaa
     4261 gattggtaaa gattgcgctg caaaacggca cgccgttgac gcgcgattgg tcaagaccgt
     4321 ggctggagac ttccatcgcg gcggcggttg caccttgttg acggaaacgg tagagcaggg
     4381 tttggacatc gacgggcgcg ggggtggtgt gcgcggtttc ttccaattcg ccccaaaagc
     4441 cgttgccgac cgtgccgata atggcggttt ttccgcccaa taaatcggca gcttgcgcca
     4501 gccattgtgt gatggaggtt ttgccgttgg taccggttac gccccagact ttgaggtcgt
     4561 ctgaaacgtt gccgtaaact tgcgccgcca acatgccggc acggtgtttc aaatctttaa
     4621 tgccttgatt ggggactttc cattcgggat tccacgcaaa tttgccgtcg tcgtcccaaa
     4681 aaacaaaagc tgcgccgttg gcaatagcag cggggatata actgcggccg tctgtatatt
     4741 cgcccggaca ggcaacgaaa atatcgcctt gtttgatttg gcggctgtct gaatgcaaca
     4801 aacgccctgc cgcgtttgca cacagcagag gcggaatgtt ggtttcagct aaaggggtta
     4861 acttgctgaa cataaaataa tctcgttgat actcggatta agacggtgtt ttgacggctg
     4921 caacattggt caaaggtttg gtcggggaaa cgcccaagat gttcaggctg ccgcccataa
     4981 tttttttgaa gggcggccct gtcactacgc cgccgtaata gccgttggca gtcggttcgt
     5041 caatggttac cgccacaatc acacggggat ttttggcggg ggcaaaaccg ataaaggtag
     5101 cgacgtgttt gttatcgacg taacgcccgt tgaccaactt acgcgccgta ccggtttttg
     5161 cgccgacgtc gaaaccatct accgcacccg ccgtacccgt accgccgggt tcggttacag
     5221 aaaccatcaa ctcacgcacc tgacgtgcgg tcgatgcttt aaatatacgt ttgccttgcg
     5281 gcgcaaccgc ctgtttttca aagctgaccg gcagcaaaac gccgtcgtgc gtcagtgcgg
     5341 tataggtgcg tgccaattgc agcaggctca actgaagacc ataaccgaaa gacatggttg
     5401 cctgttcgat aggccgccat ttttgccaat tgcgcaacgc gcccgcactt tctcccggaa
     5461 aactggaatg catacgcaca ccgatgccca actcatgata caaatcatac atttctttcg
     5521 aactgaatcg tgcagacagt ttgcttgtac cgacattgga agatttctgc atgataccgc
     5581 gcacatccaa agaaggataa acatgagtat cgcgcaccag tgccgggccg attttataag
     5641 gctgcgtatt caatctctcg ttcaaatcgg ttttacccgc atccaatgct tttgcaatga
     5701 cgaacggctt tatcgccgaa ccgggctcga tcatatcggt aacggcacgg ttgcgcctct
     5761 gttcgctgtc tgcccggccg ggtctgttgg gatcgtaggc gggcgtgttg gccaaggcga
     5821 ggatttcccc cgtgcgggca tccaaaacca ccaccgttcc ggcttttgcc tgatggtatt
     5881 cgaccgcctt attcaactct tcataagcca aagtctgaat cctctgatcc agagaaagaa
     5941 taatgtcttt gccgttttgc ggagctttat tacgcggaga atccaaactg tccacaatat
     6001 tgccttcccg atcccgcaat acgacttccg caccttctcc agcatgcaaa ctgtcttcaa
     6061 gcgaaagttc caaaccttcc tgacctttgc cgtcaatatc ggtaaatccg atgacatgtg
     6121 caaaaaggtt gcccatcggg taatggcgtt ttaattcttt ttcaaataca aagttttcca
     6181 aacccaaggc tttgacctct tcggcaatct tgggatcgag ctgccgctta atccagataa
     6241 acgacttgcc tttctgttcg agcttgttcc tcaaaacatc aaccgacaca tcgacaagct
     6301 cggacaggcg ttccaattgt gcggcagacg gcatttcctt catatcttta ggcacggcaa
     6361 acagggactc cgtcggcgcg ctcaacgcca aaaccgcacc gtttcggtcc gaaaccgtac
     6421 cgcgtgtagc cggcaatgtt tgagtccgca caatccggtt gtcgccctgt tctttcaaaa
     6481 atttatacgt taccgtctgc agatacagtc cgcgggcaat cagaccggca aacaagaccg
     6541 ccattgccat caggacgaag ctgatccgtc cgttactggt catcggcttt ttaacctgct
     6601 cttctttggg cagcatccgg ggcttatatt cgctcttaat caacattttt acttctcgtt
     6661 attattatcc tgacgcagga atccgattcc ggcacacagg ctgcttctat ctttgatgtt
     6721 ccaccataaa ggtattgccc gaaaccggcg gatggaggtt ttgtttttct gccgccgccc
     6781 tgatcgcttc gtggttcgcc aaacgcgcct gttgcagcct catttgcgca taatcctgct
     6841 ccaaggcgat ttcctgtttt ttcgccttgt ccaaagctgt gaagttgagc ctgtactggt
     6901 tttgctgcat cacaacggaa aaagcggaaa cacacaccgc aagcagcaga aggaaattca
     6961 atttgttcat tgccgttcag acgtttttct ctgttattgt tccggtatcg gaccggcagt
     7021 ccgctccgcc acacgcaaaa ccgcacttct cgccctcgga ttggcggcaa tttccgcctc
     7081 acccggcttt aatgccctgc ccacgatttt caggggcggc tcgggcaaat ccgcttctct
     7141 gaccgccgcc cagcgcggca ggggcgcgtg ttgcgaatat tttttgacaa actgcttcac
     7201 aatgcggtct tccaacgaat ggaaagcaat gaccgccaaa cgtccgccct ctttcagacg
     7261 gcacatgacc tgcggcaata ccgcccctac ttcttcaagc tcgcggttaa taaagatgcg
     7321 gaccgcctgg aaggtgcgcg tcgcaggatc ctgcccccgc tcacgagtac ggacgttttg
     7381 tgccacgatc tgcgccagct tgcgggttgt atcgattgga ctttccgccc gttgcgcaac
     7441 aatggcccgc gcaatctggc ggctaaaccg ctcttcacca taattcttga ttacctcgtg
     7501 caaatcctgt tccgacgcaa ccgctatcca ctctgcggca gacataccgc gcgtcgtatc
     7561 catacgcata tccaaaggag catcgaaacg gaagctgaaa ccgcggctgc cgtcatcgat
     7621 ttgcggagac gaaatcccca aatcaaacag cgcaccgtcc accttgccga tacccaaacc
     7681 gtccaatgcc gtctgaaacg aagcaaaacc gccatgcacg acaccgaccc gtttgtccga
     7741 acgagccagc tcctctgcca cagcaatcgc ccgcgggtct ttgtcgaaaa caatcaaccg
     7801 ccccgcatcg cccaaacgcg acaaaatcaa ccgggaatgc cctcccctgc cgaacgtacc
     7861 gtccacatag acgccgtctt cgcgcacggc aagcgcatcc accgcctcat tcagcaagac
     7921 cgtgatatgc cggtaacttt ctgtttcact cacaattgca aatccgtctg actcaactgg
     7981 aaggcaagtt cgccaggatc gtcgtccaaa gcctgaacca tttcggcctc ccactgctca
     8041 cgaccccaaa gctccaaacg gttggcacga ccgaccaaaa cgacttcacg gtcgaaatcc
     8101 accctcttcc tcagtccggc aggaagcagc acccggccgg cgctgtccca ttccaaaatt
     8161 tccgcgttat gcagcaaaag attttgaaac cgccgcaaaa cagggttatc cgccactttt
     8221 aagtttaaaa gttgcgccgc aaccttttcc cactccgcaa cagggtacat caacagcttg
     8281 tgtttcgact cgagcgttac cactacggca ggcgtataga ggcgcgacag aatgtcacgg
     8341 aatttggcag gaacagccaa ccgcccctta ctgtcgatgc ttaattcgtg tgcgccgccg
     8401 aacatgacat gtcccaagcc gaaatcaaaa tcacaagggt aaaagagaca ctttgcccca
     8461 caattcccca ccaatcgaca ctataagaaa ttttaaacac tcggtcaaat cagggcatga
     8521 aaactcatta acatatctga aatttttatt ccttttaaaa acaataagat aaaaaataac
     8581 gacaacggca cggcgggtgc ggtacagaat aatcgaacca ataaacaact atatatgatt
     8641 aatttaataa tataaacaca atatatagta ttaagataaa gccatgacag cacccgtacc
     8701 aacgtgtaat atgtcgggaa atccaataaa tttacacaag ctaacactta tcatgcccct
     8761 ccccctcccc tctcccgaag cacggcaatt ctcgctcaaa ctgcaaaccc tcattgccga
     8821 aaaaatcggc aaacacggca actggattcc attttcacgt tttatggaat tggttttata
     8881 cgctccgcaa tacggctact acaccggcgg cagccataaa atcggcaata ccggggattt
     8941 tattaccgca ccgaccctca cctctctgtt tgcacagaca ctggcacgcc aacttcaaga
     9001 acttctatcc caaacggcgg gcaatatcta tgaattcggc gcgggaaccg gacagcttgc
     9061 cgccgatttg ttgggcagca tttcggacgg catcagccgt tactatatta ttgaaatatc
     9121 gccggagctg gcagcacgtc agaaaaacct gattcaagca cgcgcaccgg aagcatctca
     9181 aaaagttgtc cacttgaccg cacttcccga agcgtttgac ggcatcatca tcggcaacga
     9241 agtactcgat gccatgcctg tcgaaatcgt ccgtaaaaat gaaggcggct cattcgagca
     9301 tgtcggcgtt tgcctagata atgaccgttt tacctattcg gcacgaccgc tgcacgactt
     9361 acagctatct gccttggctt ccctctattt tcctcaaaca gattatccct acaccagcga
     9421 actacatccg caacaatatg cctttatccg cacccttgcc tcaaggcttg aacgcggagg
     9481 tatgatattc atcgactacg gttttgatgc ggcgcagtat taccaccctc aacgcaatca
     9541 aggtactctg atcggacact accgacatca cgttatccac aatccttttg acttcatcgg
     9601 gttggccgac ctgaccgcgc atgtcaactt taccgacatt gcccaagccg gtacggatgc
     9661 aggactggat ttgacaggct atctgcccca gtcccatttt ctgctgaatc tgggcataac
     9721 cgaactgttg gcacaagtgg gaaaaacaga ctcgcccgcc tacatccgtg aagctgctgc
     9781 cgttcagaaa ctgattgacc agcatgaaat gggcgaactg tttaaagtca tcgcattcgg
     9841 aaaaaatatc ggcgtcgact gggcaggatt ccgcttcggc gacatctgcc acaaactcta
     9901 accctcatgc cgcctgaatc cgcttcagac gacataaact ttttaacatt taaaaacagt
     9961 caactaattc aaaattaaaa aatacggctt gtcaaaaaaa cagaaaaaca tataatagcg
    10021 tcttcacgaa acggcgaatt agctcagtcg gttagagcag aggaatcata atccttgtgt
    10081 ccggggttcg agtccctgat tcgccaccaa attttcgggg gtatagctca gttggtagag
    10141 cgcttgcatg gcatgcaaga ggtcagcggt tcgatcccgc ttacctccac cagataaaaa
    10201 agcacagacc gtaaaaaggt atgtgctttt ttattgcctg attgccggca aataaagaat
    10261 aaaccactgc cttcaaaaca ggcaatcgac tttaaaccta tcgccccgcc tgtcctgatt
    10321 ttatagtgaa ttaaatttaa accggtacag cgttggctcg ccttgccgta ctatctgtac
    10381 tgtctgcggc ttcgtcgcct tgtcctgatt tttgttaatt cactatatca gcccgccaga
    10441 caaacccgac ccgaataatg tcttcaggtc gggtttatgg tttcattccc aacttatcca
    10501 gcctgacagc cacaatataa tgatggcaat accaaaaaca atgcggtaat aggcaaaagg
    10561 aatataattt ttcttggaaa caaacctcag caacgctttg accgccacca agcctgaaac
    10621 aaaggcagca acaaagccaa tcaaaatcaa accgacatca tgcagggtga aaaaccggta
    10681 atgcttcagg acatcataag ccgttgcggc aaccatcatc ggcacagcca agaaaaacga
    10741 gaattctgtc gcagttttcc gttcgattcc ccaaagcatc ccgcccataa tcgtactgcc
    10801 cgaacgggac gtacccggaa tcagtgcaaa cacttgggca acgccgatca tcaaggcatc
    10861 aatcggacgc aatgcatcaa catcggcaat tttaggctct gctcggcttt ggcgtttctc
    10921 cacccacaaa ataaaaaaac cgcccaaaac cagcatgact gcaacactca aggggttaaa
    10981 cagatactct ttgatttgtt tgccgaacaa cagccccatc acggcggcag gtataaaagc
    11041 aatggcaaga ttaaggacga aacggttggc tttccggtct tttcccacgc catgcaacac
    11101 attgctgaaa cgttgccggt attcaaacac taccgccaaa actgcaccga gctggatggc
    11161 aatttcaaaa accttgtgat tgctgtgaaa accaatcaga ttgccgaaca caatcaaatg
    11221 cccggtgctg gaaatcggta aaaattcggt aaaaccttct accaagccca tcatcagggc
    11281 tttcaggaca atcagaaaat ccattgcttg cgcttctttc ggatacggga gttcggctat
    11341 ttctgtacag caggggtctg acgcttgcgt tcttccctga ctttggcaac caattcttta
    11401 atcgtatgaa cgccgccgtc aaagccgtta ttgaagataa cgcggtattt tccgccgaca
    11461 ataacggtcg gcgtgctgtc aataccgtat tgttccgtca gtttctgcat ttttaatgcg
    11521 gcggcggcag cttcgggaga atcataggcg cgcatcagtt ttttgccgtc aaagcctttt
    11581 tgagacaaag cccactttcc ggcaaccgac ctgttttcca agcggatttt ttgttcgtaa
    11641 actgctttaa acacagcagg gtttgcctga tatttcaaac ccgacaaatt gacggcagcc
    11701 gccatcctgg ccagaccgag catttcaggc tgccagacca cgtgctccgt cctcaaatag
    11761 gcatcagacg gcaatgcctt gcccaatttc aataacaaag gatcgaaatg atggcaatgt
    11821 acgcagaaat agccgaaaaa ttccaaaacc tcaattttgc ccgactgttc ttgaggaatg
    11881 ggtttatcca acacaagata gtcttccctt tccgtcaggg catatgcctg cgcggacaac
    11941 actgccgaca gcagcagcgg caacagatgt ttgagcttca taattatttg ctttcgatag
    12001 aacggatcag gctggcgact tcatgttttt tcaactcgtc ctgcattttt ttcaccgcat
    12061 cggcagacat attgccgctt tgcacccggt aaagcgtttt atgtcccgcc tgataaccga
    12121 ccaccttgga agatatgccc aagattgcca gtttggcacg ctgtccttcc gcgctccggc
    12181 ggtcggcata cgcgcccatt tgcagataat gcgttgcttc cgccttgtcg ggcgttttca
    12241 ttttctgcac ttctttggca gcggcactgc gcgctttttc gatgctgccg ctgttgagga
    12301 tttgttccgg ggtcggtttg ggtgcaactt tttccttctc cgcctttttc tcttcttttg
    12361 aagctttttt ctctgtttct ttagatggtt ttaccgcttg ttttttaacc gtttcggcat
    12421 ctttcttctg cgctttttcc ccgacggttt gttcacgctc ttccgtcagt gctttcttgc
    12481 gcactgcctg tccgtccgac ttttcccgct ccggctcgtc cgccttttcc tcaacctcgt
    12541 cggctttatc ggcagctttt tccgcatccg actgctctgc ctctttcgca gcatccggtt
    12601 cggacaaggc gttttgatcg gccggttcag gttggatgtc ttccttaggc tggtttttcg
    12661 gtttcaggat ttccgtttct gcaggctgct tcgacggaac cgggattttg aacgcatttt
    12721 gaccgctctg gttcagataa aacaaaatac cggcaataat gaccgtcgcc agtatcaaac
    12781 cgaagaaaaa accggacaga ccttttccgg attgggaaaa tttgttcata aacatacctt
    12841 aatgtgtttc agacggcatt aacgccgttt gcttacgggc ggatattcta acaatatcgc
    12901 catatttggg caaaacctgc ttccattccc gttcctataa agcgcggcgg aaacctatgg
    12961 ctttcatgac gtggcttctg ccgacttctt cgtcgcccgc caaatccgcc aatgtacgcg
    13021 ccacgcgcat gatgcggtgg aaactgcggg cggagaggga gagtttttcc agcaggctgc
    13081 ccaatgcttc ctgcgcttct ttttggatgc gggcttggga atcgagttcg ctgacgctca
    13141 aagcggcgtt gactttgccc tgccgtgcgt attgtttgtc gcgggcggcg ataacgcgtt
    13201 ccaaaacgga cgcgctgctt tcgcccgctt cctgctgcat cagttcgacg gcggacaggc
    13261 tggggacttc gatggtcaaa tcgatgcggt cgagcagcgg gccggaaatc ttgctgcggt
    13321 aacgcgcgac gctttcgggc gtgcagcggc agggtttgac gggatgcccg agataaccgc
    13381 acggacacgg gttcatggcg gcgacaagtt ggaatttggc aggatagacg gcttggcgcg
    13441 ccgcgcggga aatgtggatt tcgccgtttt ccaacggttc gcgcaaaact tccaaaactt
    13501 tgcggtcgaa ctcgggcaat tcgtccaaaa acaaaacacc gtgatgcgcc aatgaaatct
    13561 cgcccggacg cggatccgaa ccgccgccga ccatagccgc cgcgctggcg ctgtgatgcg
    13621 gactgcggaa aggacggttg ctgtcgagtt gttgctggtg gttgggcagg agcgaacgca
    13681 atgcccaaac ttcaaccaat tcgtcttcgg tcagcggcgg caggatgccg ggcagccgtt
    13741 gggagagcat agacttgccc gttcccggcg gacccatcat caagaggctg tgtccgcctg
    13801 cggcagcgat ttccaaagca aggcgggcag tgtgctgacc cttgacatcg acgaggtcga
    13861 gcaatttggt gttttcagac ggcatctgag gaacttgaca gtcggtttgc accaaaggtt
    13921 cgatgccgtt caaatgggcg gcgacttcgc ccaaagagcg cgcgccgtaa acggtaatgc
    13981 cgcgcatcac ggcggcttgt cctgcgtttt cttcaggcaa aacaaatgca cgttttgcct
    14041 gcataccctg ccacgccatc gccaacgcgc cgcgcacggg gcgcaacagc cccgacagtg
    14101 ccaattcccc cgcaaactcg tattccgcca gtttttcggg cgcaacctgc cccgatgcgg
    14161 caaggatgcc gattgcaatc ggcaaatcga aacgccccga ctctttgggc aggtcggcgg
    14221 gggcgaggtt gacggtaatt tttttggcgg ggaattcaaa accgctttga ataatggcgg
    14281 cacggacgcg gtcgcgactt tcctttactt ccgtatcggg cagcccgacg atgttgaaat
    14341 gcggcaggcc gttggcaagg tgggcttcca cttcgaccaa cggcgcattc ataccgctca
    14401 aggcgcggct gtaaaccaag gcaagcgaca tatttcagac ggccttattc gccggcttcg
    14461 gtttgctgcc tgatttcggc gacggcttct tcggcagcgg cttcagccgc ttccaatgct
    14521 gcccgttcgg gattttgcgc ggcttcgagt tttgccaaac gcgcttccaa agccgccagt
    14581 ttggtacgag ttttgattaa aacctgctgc tggatgtcga attcttcgcg cgtaaccaga
    14641 tccatacggt tgaacgcgcc gcccagcatc gccttaatat ttttttccac atctttggca
    14701 gggctgttgg cgatggtttc gctgattttc gaaccgactt cttcaaaaag ctgcttgccg
    14761 aacataatct gtatccttcc tgaacatatc aaattcaatc ggctattgta taaggaaaaa
    14821 tgccgtctga aaacgggcgg cggataatcg gcaaaacata ccgcgcctcc tttgcggttg
    14881 ctaaattaca cctcaaaaca cctgccgcct gaaaacggat ttcatattcc gcgcaacgcc
    14941 agattacaag acactacaaa acaatatact gttttaaatg atttttccga cgcgcatcgt
    15001 ttcaaactcg gctttttaag ccattaagtg ctttgcaaac aacagaaatt gggttatcct
    15061 gaaacggatt atttacaatt tcatatagtt ttattacata tcttattgtg attgaagata
    15121 atttatccga atcccccttt cgggtatccg gattttccgt tgtactttta ttagaaaaac
    15181 atttcaggcg caagttgctt gcaatttcaa agcctgtaat tctgaagttt tagacgagga
    15241 atagcacatg aatcccatgt acattacttt tgcaatctat ctggttgcag tccttctcat
    15301 cgggcttgcc gcctattttt ccacgcgcaa tttcgacgat tatattttgg gcgggcgcag
    15361 cctaggcccg tttgttaccg cgatgtcggc aggcgcgtcc gatatgtccg gctggctgct
    15421 gatgggtctg ccgggcgcga tttacctgag cggtttgaat gaggcttgga ttgccatcgg
    15481 cctcttggtc ggcgcgtatt tcaactggct cttggtggcg ggccgcctgc gcgtgcatac
    15541 cgaatacgcc aacaatgcgc tgacgctgcc ggattatttc ttccaccgct tcggcgcggg
    15601 cggacacttg atgaaagtgg tttccgcact gattatcctg ttcttcttca cgatttattg
    15661 cgcctcgggc attgtggcgg gcgcaaccct gttccaaagc ctgtttgaag gtatgactta
    15721 caatcaggca atgtggctgg gcgcgggcgc gaccatcgcc tataccttct tgggcggttt
    15781 cttggcggtc agctggacgg atacgctgca ggcttctttg atgattttcg ccctgatttt
    15841 aacgccggtg atggtctatc tgggcttggg cggcgcggaa cagatgtctg ccgcgattca
    15901 aagcgtcgcc gcaggcacgg gcaaagaata cggcagcctg tttgccggta cgaccgtcat
    15961 cggcatcatt tccaccgccg catggggctt gggctatttc ggacagccgc acattttggc
    16021 gcgctttatg gcggccgaaa gcgcgaaatc gctggtaccc gcacgccgca tcggcatgac
    16081 ttggatggcg ttgtgccttg cgggcgcggt ggcggtcggt tatttcggca ttgcgtattt
    16141 cggtgcaaat cccgacaaag tttcttctat gagcggcaac cacgaacgca tcttcatcgc
    16201 gctttccacc ctgctgttca acccttggat cgccggcatc attttgagcg cgattttggc
    16261 ggcggtgatg tccaccctgt cctgccagct tttggtttgc tccagcgcga ttaccgaaga
    16321 cttctacaaa ggctttttgc gtaaaaacgc gcaacagtcg gaactggtat gggtcggccg
    16381 cctgatggtc ttggcgattg ccgtgatttc catcctgatt gcttccgatc cgaacagcaa
    16441 agtattggga ctggtgtctt atgcgtgggc aggtttcggt gcggcgttcg gcccgattgt
    16501 gattctgtcc gtattgtgga aacgcatcac tgcctacggc gcgttgtcgg gtatggttgc
    16561 aggtgcctta accgtagtcg tatgggcgga atgggtaaaa aaaccggctc aagcggcagg
    16621 cgaaagcggc ttgttgacga tgtacgaaat cgtcccgggc tttattgttt gcttaatcgt
    16681 cgccgtattg gtttccctgt tcaacaaaga accttcgcgc gaaacccaag aacgctttga
    16741 aaaagccgac gcagattacc gcgccgcccg ataaacccct ttcagacggc acggcatccc
    16801 ggttcgtgcc gtctgaaccc gtttccgggt caaacacaaa taaaccttgc ctgcatacag
    16861 gccttatttg tgttttaccc gtttcatttt caaagaaacg gaagcaccta ccctgcccgc
    16921 atttgaagcc ttgtatttca tctgcggatt tattacgata ttaccgtatt caggccgcac
    16981 cgatgccgcc tgccccccga aaaactttgg agaatccaaa aaatgtttca ttttgcattt
    17041 ccggcacaaa ctgccctgcg ccaagcgata accgatgcct accgccgtaa tgaaatcgaa
    17101 gccgtacagg atatgttgca acgtgcacag atgagcgacg aagagcgcaa cgccgcctcc
    17161 gagcttgccc gccgtttggt tacccaagtc cgcgccggcc gcaccaaagc cggcggcgtg
    17221 gatgcgctga tgcacgaatt ctcactctcc agcgaagaag gcatcgcact gatgtgtctg
    17281 gcggaagccc tgctgcgtat ccccgacaac gccacgcgcg accgcctgat tgccgacaag
    17341 atttcagacg gcaactggaa aagccatttg aacaacagcc cttccctctt cgtcaacgcc
    17401 gccgcctggg gcctgctgat taccggcaaa ctgaccgcca caaacgacaa acaaatgagt
    17461 tccgcactca gccgcctgat cagcaaaggc ggcgcaccgc tcatccgcca aggcgtaaat
    17521 tacgccatgc gcctgttggg caaacagttc gtaaccggac agaccattga agaagccctg
    17581 caaaacggca aagaacgcga aaaaatgggc taccgcttct ccttcgatat gttgggcgaa
    17641 gccgcctaca cccaagccga tgccgaccgc tactaccgcg actatgtcga agccatccac
    17701 gccatcggca aagatgcggc aggacaaggc gtttacgaag gcaacggcat ttccgtcaaa
    17761 ctctccgcca tacatccgcg ctactcgcgc gcccaacacg gccgtgtgat gggcgaactg
    17821 ttgccgcgcc tgaaagagct gttccttttg ggtaaaaaat acgatatcgg tatcaacatc
    17881 gatgccgaag aagccaaccg tctggagctg tctttggatt tgatggaggc actcgtttcc
    17941 gatcccgatt tggcaggcta caaaggcatc ggtttcgttg tccaagccta ccaaaaacgt
    18001 tgtccgttcg ttatcgacta cctgatcgac cttgcccgcc gcaacaacca aaaactaatg
    18061 atccgcctcg tcaaaggcgc gtattgggac agcgaaatca aatgggcgca agtggacggc
    18121 ttgaacggct atccgaccta cacccgcaaa gtccacaccg acatctccta cctcgcctgc
    18181 gcgcgcaaac tgctttccgc gcaagacgcg gtatttccgc aattcgccac ccacaacgcc
    18241 tacaccttgg gcgcaatcta ccaaatgggc aaaggcaaag actttgaaca ccaatgtctg
    18301 cacggcatgg gcgaaaccct gtacgaccaa gtcgtcggcc cgcaaaactt aggccgccgc
    18361 gtgcgcgtgt acgccccggt cggcacacac gaaaccctgc tcgcctactt ggtgcgccgc
    18421 ctgttggaaa acggcgcgaa ctcgtctttc gtcaaccaaa tcgtcgatga aaacatcagc
    18481 atcgacacgc tcatccgcag cccgttcgac accatcgccg aacaaggcat ccacctgcac
    18541 aacaccctgc cgctgccgcg cgatttgtac ggcaaatgcc gtctgaactc gcaaggcgtg
    18601 gacttgagca acgaaaacgt attgcagcag cttcaagaac agatgaacaa agccgccgcg
    18661 caagacttcc acgccgcatc catcgtcaac ggcaaagccc gcgatgtcgg cgaagcgcaa
    18721 ccgattaaaa accctgccga ccacgacgac atcgtcggca cagtcagctt tgccgatgcc
    18781 gcgcttgccc aagaagcggt tggcgcagcc gttgccgcgt tccccgaatg gagtgcgaca
    18841 ccagccgccg aacgcgccgc ctgcctgcgc cgtttcgccg acctgctcga acagcacacc
    18901 cccgcgctga tgatgcttgc cgtgcgcgaa gcgggcaaaa cgctgaacaa cgccattgcc
    18961 gaagtgcgcg aagccgtcga tttctgccgc tactacgcaa acgaagccga acacaccctg
    19021 cctcaagaca caaaagccgt cggcgcgatt gtcgccatca gcccgtggaa cttcccgctc
    19081 gccatcttta ccggcgaagt cgtgtccgca ttggcggcag gcaacaccgt tatcgccaaa
    19141 cccgccgaac aaaccagcct gattgccggt tatgccgttt ccctcatgca cgaagccggc
    19201 atcccgactt ccgccctgca actcgtcctc ggcgcaggcg acgtgggtgc ggcattgacc
    19261 aacgatgccc gcatcggcgg cgtaattttc accggctcga ccgaagtggc gcgcctgatc
    19321 aacaaagccc ttgccaaacg caacgacaat cccgtcctga ttgccgaaac cggcggacaa
    19381 aacgccatga ttgtcgattc caccgcactt gccgaacaag tctgcgccga cgtattgaac
    19441 tccgccttcg acagcgcggg acaacgctgc tccgccctgc gtatcttgtg cgtccaagaa
    19501 gacgttgccg accgtatgct cgacatgatc aaaggcgcga tggacgaact cgtcgtcggc
    19561 aaaccgattc aactcaccac cgatgtcggc cccgtcatcg atgccgaagc gcagcaaaac
    19621 ctgttgaacc acatcaacaa aatgaaaggt gttgccaagt cctaccacga agtcaaaacc
    19681 gccgccgatg tcgattccaa aaaatccacg ttcgttcgcc ccatcctgtt tgaattgaac
    19741 aacctcaacg aactgcaacg cgaagtcttc ggccccgtcc tgcacgtcgt ccgctaccgc
    19801 gccgacgaac tcgacagcgt catcgaccaa atcaacagca aaggctacgc cctgacccac
    19861 ggcgtacaca gccgcatcga aggcacggta cgccacatcc gcagccgcat cgaagccggc
    19921 aacgtttacg tcaaccgcaa catcgtcggc gcagtcgtcg gcgtacagcc cttcggcgga
    19981 cacggtctgt ccggcacagg tcccaaagca ggcggttcat tctacctgca aaaactgacc
    20041 cgcgccggcg aatgggttgc cccgaccctg agccaaatcg gacaggcgga cgaagccgca
    20101 ctcaaacgcc tcgaagcact ggttcacaaa ctgccgttca acgccgaaga gaaaaaagcc
    20161 gcagcggccg ctttgggaca cgcccgcatc cgcaccctgc gccgtgccga aaccgtcctt
    20221 accggaccga ccggcgagcg caacagcatc tcatggcacg cgcccaaacg cgtttggata
    20281 cacggcggca gcacggttca agcctttgcc gcactgaccg aacttgccgc ctccggcata
    20341 caggcagtgg tcgaacccga cagccccttg gcttcctaca ctgccgactt ggaaggtctg
    20401 ctgctggtca acggcaaacc cgaaaccgtc ggcatcagcc acgttgccgc cctgtcgcct
    20461 ttgaacagcg cgcgtaaaca ggaacttgcc gcccacgacg gcgcactcat ccgcatcctc
    20521 ccttcggaaa acggactcga catcctgcaa gtgtttgaag aaatctcttg cagcgtcaac
    20581 accacagccg ccggcggcaa cgccagcctg atggcggtcg ccgactgatt ttaccgaaat
    20641 ccccgggcgc gggccgtgaa ccaatgccgt ctgaaaacct ttcagacggc a
//
LOCUS       DAXHPV010000022        19755 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.022, whole genome shotgun sequence.
ACCESSION   DAXHPV010000022 DAXHPV010000000
VERSION     DAXHPV010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 19755)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19755)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19755
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.022"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(203..278)
                     /locus_tag="ACFM6C_000567"
     tRNA            complement(203..278)
                     /locus_tag="ACFM6C_000567"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(243..245),aa:Asn,seq:gtt)
     gene            complement(371..730)
                     /locus_tag="ACFM6C_000568"
     CDS             complement(371..730)
                     /locus_tag="ACFM6C_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="roadblock/LC7 domain-containing protein"
                     /protein_id="HFC6158066.1"
                     /translation="MQQLLISILEDLNNTSTDIIASAVISTDGLPMATMLPSHLNSDR
                     VGAISATLLALGSRSVQELACGELEQVMIKGKSGYILLSQAGKDAVLVLVAKETGRLG
                     LILLDAKRAARHIAEAI"
     gene            complement(753..1397)
                     /locus_tag="ACFM6C_000569"
     CDS             complement(753..1397)
                     /locus_tag="ACFM6C_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M23"
                     /protein_id="HFC6158067.1"
                     /translation="MESTLSLQANLYPRLTPAGAFYAVSSDAPSAGKTLLHSLLKADA
                     DEMVSSEKLLTWADTADIDTALNLLYRLQKLEFLYGDENGHSDGINLSDEQLPLLMEQ
                     LSGSGKALLVDRNGLYLANANFHHEAAEELGLLAAEVAQMEKKYRLLIKNNLYINNNA
                     WGVCDPSGQSELTFFPLYIGSTKFILVIGGIPDLGKEAFVTLVRILYRRYSNRV"
     gene            complement(1399..1935)
                     /locus_tag="ACFM6C_000570"
     CDS             complement(1399..1935)
                     /locus_tag="ACFM6C_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP/GTP-binding protein"
                     /protein_id="HFC6158068.1"
                     /translation="MRENKIIFTGPVGVGKTTAIAAISDEALVQTDASASDMTLDRKR
                     NTTVAMDYGAISLDEDTKVHLYGTPGQERFNFMWEILSQGSMGLVLLLDNARTNPLKD
                     LEFFLHSFRGLLEKAPVVVGITKMDIRSQPSIDVYHKYLAKHNLNVPVFEIDARKEDD
                     VKQLVSAMLFSIDPGLEV"
     gene            complement(1947..3044)
                     /locus_tag="ACFM6C_000571"
     CDS             complement(1947..3044)
                     /locus_tag="ACFM6C_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HFC6158069.1"
                     /translation="MEVQLPKIKTVRVMLAGMTAQQESVFKMAFKMHNTTRYETVSPS
                     DGSAVPDLVLADTDAEGGFELWKELAERYKDIPVAVCSEKVPDSEVPYLPKPIRFETL
                     FPMLRKLLQGENVYGKSFIAPADRSAKNNGNVQRTVTIRQFNPNKGLLGALRFAEKNR
                     QDIAILHGNKPVLIVFPSIQRVLLTESVQKLEELCKDENLQVSCKTVPDNPQWREKAK
                     VGIMSCMWQFSIWTAQGRLIYPISPDTPFTLKSWPNLTRLANVPGSIRLSAFLTKASV
                     NLNVLYKVMPLNLNDILNYLAATYTTGFLSVDLKTVSQQAYSDMADKINIGADSASDS
                     EMMKKAEKITTPSQSQSRGLLQRLMKKLLGS"
     gene            complement(3047..4483)
                     /locus_tag="ACFM6C_000572"
     CDS             complement(3047..4483)
                     /locus_tag="ACFM6C_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFC6158070.1"
                     /translation="MENSLIIGLALAVLLMLLVMRAKQGKKTPKRKSQGVGNTQGQTP
                     GSNDSDWVDQIGQSVSDGTQPDWSWNESAETASAAVSAQEVDPLTEYQVYKQFGYQGK
                     AAESLAAYLDGIPDGEAKPENLIRELLDINLEVGDVDVLADNLQKYGKLIPSELLAKY
                     IEQALQRDSNHLRIRVLAEEGLGWGTQEIEKRAEGGSATAASASPPPDAGGKAYEAEE
                     IKRIPIVRGKKDVSGISQEEIGAIAGLVRADQGAKILKDKVSYETASKQYDRAIQTSE
                     KPANLIIDALKLDYQHADIDRFAGHLWKLYQTLGNYGRQVKERMLGWGYSLGYHEVFD
                     DLEKGPNDRQIKDIGMGHGYLPKNIQKFKSQHRDLVLQDSSLINTGSSPADDAVKEVE
                     SLLMYGQIEAAMDVLEQAVLKYPDESQLYITLIDIYERTEDWDRLGQFLRVLRERADR
                     LPEEVVMLMSRLLQRMNQNIKKIKRYGK"
     gene            complement(4703..5485)
                     /gene="bioC"
                     /locus_tag="ACFM6C_000573"
     CDS             complement(4703..5485)
                     /gene="bioC"
                     /locus_tag="ACFM6C_000573"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010340 - carboxyl-O-methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HFC6158071.1"
                     /translation="MESLTAINKSRIRQAFQKALNDYDRHALIQQKMTINLMAHLQDY
                     LPDMPLENVLELGCGSGMLSALLQKQISANYWLFNDLCDVQPQLAEKLPQSFDFYCGD
                     AENFPFQRQFDLIASASAVQWFHQPDAFIAHCKTGLKANGLLAVATFGKDNLKEVRQI
                     TNIGLNYPTLSQWQAWLAKDFELLWCEDFKVILDFDTPLDVLKHLKYTGVTATNQKNW
                     TRKNLNGFIGDYLSAFGMPSGKVRLTYHPLFFIARYSAAGRQ"
     gene            complement(5473..6120)
                     /locus_tag="ACFM6C_000574"
     CDS             complement(5473..6120)
                     /locus_tag="ACFM6C_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl esterase BioG family
                     protein"
                     /protein_id="HFC6158072.1"
                     /translation="MKTKFYNHQGGHLILYFAGWGTPPDAVNHLILPENHDLLICYDY
                     QDLNLDFDFSAYRHIRLVAWSMGVWAAERALQGIRLKSATAVNGTGLPCDDNFGIPCA
                     VFKGTLENLTENTRLKFERRMCGDKVSFEDYQQFPARPFDEIHQELTALFEMIGQDRR
                     ADLIRWTNALVGSGDKIFMPANQHRYWTPRCTVREIDGGHYLFSRFTHWSALWNH"
     gene            complement(6130..7272)
                     /gene="bioF"
                     /locus_tag="ACFM6C_000575"
     CDS             complement(6130..7272)
                     /gene="bioF"
                     /locus_tag="ACFM6C_000575"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008710 - 8-amino-7-oxononanoate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HFC6158073.1"
                     /translation="MKVFKQQLEQLGAQNQYRSIPDLIHQGRYITRENRKMLNMSSND
                     YLGLASDENLRRSFLQQYGGNFPSFTSSSSRLLTGNFPIYTDLEELVAQRFQRESALL
                     FNSGYHANLGILPALTTTKSLILADKFVHASMIDGIRLSRCAFFRYRHNDYEHLKNLL
                     EKNVGKFDRTFIVTESVFSMDGDVADLKQLVQLKKQFPNTYLYVDEAHAIGVYGQNGL
                     GIAERDNLIAEIDLLVGTFGKALASVGAYAVCNQVLKECLINQMRPLIFSTALPPFNV
                     AWTYFIFERLPQFSKERSHLEQLSAFLRREVAHRTQIMPSQTCIVPYILGGNEAALAK
                     AEYLQRQGYYCLPIRPPTVPKNTSRIRLSLTADMTTDEVRQFAVCL"
     gene            7495..8571
                     /locus_tag="ACFM6C_000576"
     CDS             7495..8571
                     /locus_tag="ACFM6C_000576"
                     /EC_number="2.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0018104 - peptidoglycan-protein
                     cross-linking [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HFC6158074.1"
                     /translation="MICRKPIGHTPYFDMNKTICRTAALLISGFSYANTVIPDVSPVA
                     QGQHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKS
                     IQKERGDGVKTIAAGPDNPLGPVFVRLGDPKLGLGIHGTNAPASVPGVRSHGCIRMKS
                     PDALEFAKTIASGSPASVIYQMAGLNEDADRNLWLAAFRDPYGKNNLDIASLKKSIAQ
                     WAKTQGKTIAPEKVDAVLKDRTGSAVCLTCGKNGKMKMPLKSLAWIQGSSSYSQAEVI
                     EQTEETNSAEISETRTPEVPDVHTPEAQPHLNTQSDGTPTAYTEPAADSSPQVETPDQ
                     AASEPVDVLFSIDVIRQGNLRLGN"
     gene            complement(8778..10244)
                     /locus_tag="ACFM6C_000577"
     CDS             complement(8778..10244)
                     /locus_tag="ACFM6C_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008509 - monoatomic anion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006820 - monoatomic anion transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HFC6158075.1"
                     /translation="MMKLGFKPIPLAIAAVLCALVLALPVPDGVKPQAWTLLAMFVGV
                     IAAIIGKAMPLGALSIIAVGLVAVTGVTADKPGAAMSDALSAFANPLIWLIAIAVMIS
                     RGLLKTGLGMRIGYLFIAVFGRKTLGIGYSLALSELLLAPVTPSNTARGGGIIHPIMQ
                     SIAGSYGSNPAKGTEGKMGKYLALVNYHSNPISSAMFITATAPNPLIVNLIAENLGSS
                     FRLSWGAWAWAMAVPGVIAFFVMPLILYFLYPPEIKETPNAVQFAKDRLREMGKMSAD
                     EIIMAVIFGILLLLWADVPALITGNHAFSINATATAFIGLSLLLLSGVLTWDDVLKEK
                     SAWDTIIWFGALIMMAAFLNKLGLIKWFSGVLAESVGGLGVSGTAAGVILVLAYMYAH
                     YMFASTTAHITAMFGAFLAAAVSLNAPAMPTALMMAAASNIMMTLTHYATGTSPVIFG
                     SGYTTMGEWWKAGFIMSVVNFLIFFVIGSIWWKVLGYW"
     gene            complement(10442..11365)
                     /gene="speB"
                     /locus_tag="ACFM6C_000578"
     CDS             complement(10442..11365)
                     /gene="speB"
                     /locus_tag="ACFM6C_000578"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008783 - agmatinase activity [Evidence
                     IEA];
                     GO_process: GO:0008295 - spermidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HFC6158076.1"
                     /translation="MQYSTLAGQTDNSLVSNNFGFLRLPLNFMPYESHADWVITGVPY
                     DMAVSGRSGARFGPEAIRRASVNLAWEHRRFPWTFDVRERLNIIDCGDLVFSFGDSRD
                     FVEKMEAHAGKLLSSGKRCLSLGGDHFITLPLLRAHARYFGKLALIHFDAHTDTYDNG
                     SEYDHGTMFYTAPKEGIIDPAHSVQIGIRTEHSKKLPFTVLTAPQVNEDSVEETVRKI
                     KETVGNMPVYLTFDIDCLDPSFAPGTGTPVCGGLSSDRALKILRGLTDLDIVGMDVVE
                     VAPSYDQSDITALAGATIALEMLYLQGAKKD"
     gene            complement(11464..13356)
                     /gene="speA"
                     /locus_tag="ACFM6C_000579"
     CDS             complement(11464..13356)
                     /gene="speA"
                     /locus_tag="ACFM6C_000579"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008792 - arginine decarboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006527 - arginine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HFC6158077.1"
                     /translation="MPILTIREVCNINHWGIGYYDVDDSGEIIVRPNPSQHNQIVSLQ
                     KLTEAVQQKHQARLPVLFCFPQILEHRLRDINRAFQTAREECGYKGGYCLVYPIKVNQ
                     HRRVIESLMSSGQPHGLEAGSKAELMAVLAHAGTRQTLIVCNGYKDREYIRFALMGEK
                     LGHQVYLVIEKLSEIQMVLEEAEKLGIKPRLGVRARLASQGSGKWQSSGGEKSKFGLS
                     ASQVLQLVDILKQKNRLDCLQLLHFHLGSQLGNIRDVATGVHESARFYVELHKLGVNI
                     RCFDVGGGLGVDYEGNRTQSDCSVNYSLNEYAATVVWGISQACLEHGLPHPTIITESG
                     RGITAHHAVLVANVIGVERYKPRRLDAPSPEAPRVLHSMWETWTDISASREKRSLRSW
                     IHEGQFDLADVHNQYNVGLLSLAQRAWAEQLYLNICHEVGELFNEKHRSHRTIIDELQ
                     ERFADKLYVNFSLFQSLPDAWGIDQLFPVCPITGLNEPIARRAVLLDITCDSDGTIDH
                     YIDGDGIAGTMPMPDYPEEEPPLLGFFMVGAYQEILGNMHNLFGDTATADVVVGEDGQ
                     FTVIDYDEGNTVADMLEYVYQDPKELMKRYREQIEHSDLPASQAMSFLKELEAGLNGY
                     TYLEDE"
     gene            complement(13523..13807)
                     /locus_tag="ACFM6C_000580"
     CDS             complement(13523..13807)
                     /locus_tag="ACFM6C_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HFC6158078.1"
                     /translation="MKKLLLAAVVSLSAAAAFAGDSAERQIYGDPHFEQNRTKAVKML
                     EQRGYQVHDVDADDHWGKPVLEVEAYKDGREYDIVLSYPDLKIIKEQLDR"
     gene            complement(13958..15766)
                     /gene="aspS"
                     /locus_tag="ACFM6C_000581"
     CDS             complement(13958..15766)
                     /gene="aspS"
                     /locus_tag="ACFM6C_000581"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HFC6158079.1"
                     /translation="MRTNYCGLISEQYLDQTVTVKGWVHRRRDHGGVIFIDLRDREGI
                     VQVVIDPDTPEAFAAADSARNEYVLSITGRVRNRPEGTTNDKMISGKIEILAKEIEVL
                     NAAATPPFQIDDENISENVRLTNRVIDLRRPVMQRNLRLRYQVAMGVRRYLDAQGFID
                     IETPMLTRSTPEGARDYLVPSRVHPGEFFALPQSPQLFKQLLMVAGFDRYYQITKCFR
                     DEDLRADRQPEFTQIDLETSFLNEDEIMDITEGMAKQVFQDALGVDLGDFPRMPYSEA
                     MFYYGSDKPDMRINLKFTELTDLMKTEEFKVFRGAADMKGGRVVALRVPNGAKFSRKE
                     IDEYTKFVGIYGAKGLAYIKVNDVGNLSNGEDSGLQSPIVKFLSENALKEIIARTGAQ
                     NGDIIFFGADKAKVVNEAIGALRIKVGLEHGKDNGYFTDEWKPLWVVDFPMFEYDEEA
                     DRYVAVHHPFTAPKEGHEDLMVSDPANCLARAYDMVLNGWEIGGGSIRIHRADVQEKV
                     FAALKISPEEQQEKFGFLLDNLKFGAPPHGGLAFGLDRLVTLMTGAESIRDVIAFPKT
                     QRAQCLLTNAPNSVDDKQLRELSLRLRQKVAETKEA"
     gene            complement(15824..16525)
                     /locus_tag="ACFM6C_000582"
     CDS             complement(15824..16525)
                     /locus_tag="ACFM6C_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF502 domain-containing protein"
                     /protein_id="HFC6158080.1"
                     /translation="MTEPAAEGGKAAKALKKYLITGILVWLPIAVTVWVVSYIVSASD
                     QLVNLLPKQWRPQYVLGFNIPGLGVIVAIAVLFVTGLFAANVLGRQILAAWDSLLGRI
                     PVVKSIYSSVKKVSESLLSDSSRSFKTPVLVPFPQSGIWTIAFVSGQVSNAVKAALPK
                     DGDYLSVYVPTTPNPTGGYYIMVKKSDVRELDMSVDEALKYVISLGMVIPDDLPVKTL
                     AGPMPSEKADLPEQQ"
     gene            complement(16668..17816)
                     /locus_tag="ACFM6C_000583"
     CDS             complement(16668..17816)
                     /locus_tag="ACFM6C_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HFC6158081.1"
                     /translation="MPTMGAEMNTRNMRYILLTGLLPMASAFGETALQCAALTDNVTR
                     LACYDRIFAAQLPSSAGQEGQESKAVLNLTETVRSSLDKGEAVIVVEKGGDALPADSA
                     GETADIYTPLSLMYDLDKNDLRGLLGVREHNPMYLMPLWYNNSPNYAPSSPTRGTTVQ
                     EKFGQQKRAETKLQVSFKSKIAEDLFKTRADLWFGYTQRSDWQIYNQGRKSAPFRNTD
                     YKPEIFLTQPVKADLPFGGRLRMLGAGFVHQSNGQSRPESRSWNRIYAMAGMEWGKLT
                     VIPRVWVRAFDQSGDKNDNPDIADYMGYGDVKLQYRLNDRQNVYSVLRYNPKTGYGAI
                     EAAYTFPIKGKLKGVVRGFHGYGESLIDYNHKQNGIGIGLMFNDLDGI"
     gene            complement(17977..18240)
                     /gene="rpsT"
                     /locus_tag="ACFM6C_000584"
     CDS             complement(17977..18240)
                     /gene="rpsT"
                     /locus_tag="ACFM6C_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HFC6158082.1"
                     /translation="MANSAQARKRARQSVKQRAHNASLRTAFRTAVKKVLKAVEAGDK
                     AAAQAVYQESVKVIDRIADKGVFHKNKAARHKSRLSAKVKALA"
     gene            18543..19685
                     /locus_tag="ACFM6C_000585"
     CDS             18543..19685
                     /locus_tag="ACFM6C_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HFC6158083.1"
                     /translation="MKKSVLAVLAALSLAACGGSEKNAVQPQADAASAANAEAAATDT
                     LNIYNWSNYVDESTVEDFKKANNLKLTYDLYENNETLEAKMLTGKSGYDLVVPGIAFL
                     PRQIEAGAYQKVNKDLIPNYKNIDPELLKMLETADPGNQYAVPYFSGVNTIAITAKGK
                     ELLGGKLPENGWDLLFKPEYTHKLKSCGIALWDTPSEMFPILLNYLGKDPKGSNPEDL
                     KAAAEVLKSIRPDVKRFSPSIIDELARGDICLAAGNGGDLNLAKARSEEVKNNVGIEV
                     LNPKGMGFWIESWLIPADAKNVANAHKYINYTLDPEIAAKNGIAVTFAPASKPAREKM
                     PAELVNTRSIFPNEQDMKDGFVMPQMSTDAKKLSVSLWQKIKVGTN"
BASE COUNT         5077 a         5113 c         4593 g         4972 t
ORIGIN      
        1 caatgccgta ctggtttttg ttaatccact ataaaatcga gtttatccta gttgtccagg
       61 acagccccta ttttttcata accatcacga aaggaatttt gcaaagattt tattccatct
      121 caaaacaatc atctcaaaaa tgcgtttctg accgccggta aaacaaaacc ctctaagaaa
      181 atacttagag ggttttgaaa tttggctccc cgacctgggc tcgaaccagg gacctgcgga
      241 ttaacagtcc gtcgctctac cgactgagct atcggggaat aagcgcgaat aataaaacag
      301 aaataccgaa cgtgtcaata taaattgaca atcgattgca ctttatctgc aagcccgcaa
      361 tctttatatg ttatatggct tccgcaatat gccttgccgc acgtttggca tccaatagga
      421 ttaaaccaag tctgccggtt tcttttgcca ccagcaccaa cacggcatct ttacccgcct
      481 gacttaaaag gatatagcct gattttcctt taatcatcac ttgttccaat tccccgcagg
      541 cgagttcctg caccgagcga ctccccaaag caagcaaagt ggcagaaatc gcccctaccc
      601 tgtccgaatt caaatgtgaa ggaagcattg tcgccatcgg caatccgtcg gttgagataa
      661 cggcagacgc gataatatcc gtagatgtat tgtttaaatc ttcaaggatt gaaatcaata
      721 attgctgcat aacccctcct ctctcccaag ttttacacgc ggttgctgta acggcggtat
      781 aaaatcctta ccaaagtaac aaatgcctct ttgcccaaat cgggaatgcc gccgataacc
      841 aaaataaatt tggttgaacc gatatacaat gggaaaaatg tcaattcgct ctgaccggaa
      901 ggatcgcaaa cgccccaagc gttattgttg atatacaggt tgttcttaat cagcagccgg
      961 tatttctttt ccatctgtgc gacttctgcc gccaacaacc ccaactcttc cgccgcctca
     1021 tgatggaaat tggcgttggc aagatacaga ccgttccgat cgaccaataa cgccttaccg
     1081 ctgccggaca attgttccat cagcaacggc aattgctcgt ccgacaaatt gatgccgtct
     1141 gaatgaccgt tttcatcgcc atagaggaat tcgagttttt gcaaacggta caacaggttc
     1201 aaagcggtat cgatgtcggc ggtgtccgcc caggtaagca gcttctcact gctgaccatt
     1261 tcgtccgcat ccgctttcaa caggctgtgc aacaaagttt taccggcact gggggcatcg
     1321 ctggatacgg cataaaatgc accggcagga gtcaggcggg gatataaatt tgcttgtagt
     1381 gaaagtgttg attccatatt aaacctccag tcccggatca atagaaaata acattgcgct
     1441 aaccaattgt tttacgtcat cttccttacg ggcatcaatt tcaaaaaccg gaacattaag
     1501 attatgtttt gcaagatatt tgtgatacac gtcgatactg ggctgagagc gtatatccat
     1561 cttggtaata ccgacaacga cgggggcctt ctccagcagc cctcgaaacg aatgtaaaaa
     1621 gaattccaaa tctttcaacg gattggttcg ggcattatct aaaagcaaga ccaaacccat
     1681 actgccttgg cttaagattt cccacataaa gttgaaccgt tcctgaccgg gcgtaccata
     1741 taaatggact ttggtatcct catccaagct gatggccccg tagtccatcg ccactgtcgt
     1801 attccttttc ctatccaaag tcatatcgga tgcggaagca tcggtctgaa cgagtgcttc
     1861 gtccgaaata gccgcaatgg cagtggtttt ccctacgccg acaggtcctg tgaaaataat
     1921 tttattttct ctcatctctc cgcctcttag ctgcccaaca gttttttcat cagcctttgc
     1981 agaaggccgc gcgactggga ttgggatggt gttgtgattt tttccgcttt tttcatcatt
     2041 tcactatcag aggcagaatc ggctccgata tttattttat ccgccatatc ggagtatgcc
     2101 tgttgtgaaa ccgtttttaa atctaccgac aaaaacccgg ttgtataggt tgccgcaaga
     2161 taattcagaa tatcattgag gtttaaaggc atcactttat acaacacgtt aaggttgacg
     2221 gatgccttgg tcagaaatgc cgacaagcgt atcgaccccg gcacatttgc caaccgggtc
     2281 aggtttggcc aagatttcaa cgtaaacgga gtatcgggag aaatcggata aatcaacctg
     2341 ccctgcgccg tccaaatgga aaactgccac atacaggaca taatgcctac tttagccttt
     2401 tcgcgccatt gcgggttatc gggaacagtc ttgcagctga cctgcaaatt ttcgtctttg
     2461 cacaattctt cgagtttttg cacactttct gtcagcaaaa cccgttgtat cgaggggaaa
     2521 acaataagga ccggcttatt tccatgcaag atagcgatgt cctgcctgtt cttttccgca
     2581 aaccgcaacg cccccaataa tcctttattc gggttaaact ggcgtatcgt aaccgtacgc
     2641 tgcacattcc cgttattttt cgccgaccgg tctgcgggtg caataaacga tttcccataa
     2701 acattctcgc cctgcaacaa tttgcggagc ataggaaaca atgtttcaaa ccgaatcggt
     2761 ttgggcaggt agggaacttc agaatcggga actttctccg aacagacggc gacgggtata
     2821 tccttataac gctcggcaag ctctttccaa agttcaaaac cgccctcggc atcggtatcc
     2881 gccaaaacca aatcgggcac ggcactgccg tctgaagggg atactgtttc ataacgggtg
     2941 gtattgtgca ttttgaatgc cattttgaaa acggattcct gctgcgccgt catccccgcc
     3001 aacattacgc gtactgtttt aattttcggc agttgaactt ccatttttat tttccgtacc
     3061 gttttatttt tttaatattt tgattcatac gctgcagcag ccggctcatc agcataacga
     3121 cctcttcagg aagcctgtcc gcacgttccc tcaataccct taaaaactgc cccaacctat
     3181 cccaatcttc agtacgttca taaatatcga tcaacgtaat ataaagctgg gactcgtcgg
     3241 gatatttcaa taccgcctgc tccaacacat ccattgccgc ttcaatctga ccatacatca
     3301 gcaacgactc tacttcctta accgcatcgt ctgccggaga cgaaccggtg ttaatcaacg
     3361 aagaatcttg aagcaccaaa tcccgatgtt gcgatttgaa tttctgtata tttttcggca
     3421 gatacccgtg ccccataccg atgtctttga tttgccggtc gttcggccct ttttccaaat
     3481 catcgaaaac ttcatggtaa cccaagctgt acccccaccc cagcatccgc tctttaacct
     3541 gcctgccgta gttgcccaac gtttggtaaa gtttccacaa atgtccggca aaacggtcta
     3601 tgtccgcgtg ttggtaatcg agtttcaacg catcgataat caggtttgca ggtttttcgg
     3661 aagtttggat ggcacggtcg tattgtttcg atgccgtttc atagctgact ttgtctttaa
     3721 ggattttcgc accttgatcg gcgcgaacca aaccggcaat cgcaccgatt tcctcttgac
     3781 tgattccgga cacgtctttt ttgccccgca caatcgggat gcgcttgatt tcttcggctt
     3841 cataagcctt accgccggca tccggcgggg gcgatgcgga agctgccgtc gcagaaccgc
     3901 cttccgcacg tttttcaatc tcctgagtac cccatcccaa accttcttct gccaagacgc
     3961 ggatacgcaa atggtttgaa tcgcgctgta atgcctgttc gatatatttt gccaaaagtt
     4021 cggaaggaat cagtttgccg tatttttgca gattgtctgc caaaacatcg acatccccca
     4081 cttcgagatt gatatcgagc agctcgcgga taaggttttc aggtttcgct tcaccatccg
     4141 gaatgccgtc cagataggca gccaaagatt cggcagcctt gccctgataa ccgaattgct
     4201 tataaacctg atactccgta agcggatcga cttcttgcgc ggatacggcg gcggatgcgg
     4261 tctcggcact ttcgttccaa gaccagtcgg gttgcgtgcc gtctgaaacc gattgtccaa
     4321 tctgatcgac ccagtccgaa tcattgcttc cgggtgtctg cccctgcgta ttgccgacac
     4381 cttgggattt gcgcttcggt gttttcttac cctgcttcgc acgcataacc aaaagcatca
     4441 gcaataccgc cagtgccaaa ccgataatta atgagttttc caaaggatac tcccgatacc
     4501 gtaacgagcg gataactgac cgcctgcaac gaccattgtc cgcttttatt attaacgatt
     4561 tactgaaata gacttgtaag ttttaaatca taccataatt taacgtttaa caatatgcct
     4621 tctgcacaag cctcgccata ttacctttta cccacatcag tatcaatacc cgatataaaa
     4681 ataactttgc ccataagctg ccttattgcc tgcccgccgc agagtagcgc gcgataaaaa
     4741 ataacggatg ataagtcagg cgcactttgc ccgacggcat accgaacgcc gacaagtaat
     4801 cgccaataaa tccattgaga ttttttcttg tccaattttt ttggttcgtg gctgttacgc
     4861 ctgtatattt aaggtgtttg agtacatcta acggcgtatc aaagtctagt attaccttaa
     4921 aatcctcaca ccataaaagc tcaaaatctt tggctaacca agcctgccat tgggataaag
     4981 tcgggtaatt taagcctata tttgtaattt ggcggacttc ttttaaattg tctttgccaa
     5041 aggttgcaac cgccaataat ccgtttgctt tcaagcctgt tttgcaatgg gcgataaaag
     5101 cgtcgggttg atgaaaccat tgcacggcag atgcgcttgc gattaagtca aattgtcgtt
     5161 gaaaaggaaa gttttccgca tcgccgcaat aaaaatcaaa ggattgcggc agtttttcag
     5221 ccagttgggg ctgcacatcg cacaaatcat taaataacca ataattcgct gaaatctgtt
     5281 tttgcagcaa ggcactcaac attcctgagc cgcagcccaa ttccaacacg ttttccaatg
     5341 gcatatccgg caaataatct tgcaaatgcg ccattaaatt aatcgtcatt ttttgttgga
     5401 ttaaggcgtg ccggtcataa tcgtttaatg ctttttggaa agcctgccga atgcgcgatt
     5461 tatttatggc agtcagtgat tccatagtgc cgaccaatgg gtgaatcttg aaaacaggta
     5521 atgtccgccg tcaatttccc gaacggtgca acgcggtgtc caatatcggt gctgattggc
     5581 aggcataaaa attttatcgc ctgatccgac caaggcattt gtccagcgaa tcaaatctgc
     5641 gcgcctatct tgcccgatca tctcaaaaag tgcggtaagt tcttgatgaa tttcgtcaaa
     5701 cgggcgtgcg ggaaattgtt ggtaatcttc aaaagatact ttatcgccac acattctgcg
     5761 ttcaaatttt aaacgggtgt tttccgtgag gttctccaat gtgcctttaa aaacggcgca
     5821 agggataccg aaattatcat cgcaaggcaa acctgtgcca ttcactgccg ttgcggattt
     5881 taatcttatt ccttgcaatg ccctctctgc cgcccaaacg cccattgacc acgccaccaa
     5941 acggatgtgc cgataggcgg aaaaatcaaa atccaaattt aaatcttgat aatcgtagca
     6001 aatcaataaa tcgtgatttt ccggcaaaat caaatgattt acagcatcgg gcggcgttcc
     6061 ccaacctgca aaatacagga ttaaatgtcc gccttgatga ttgtaaaatt ttgttttcat
     6121 atcatatcct tacaggcaca ccgcaaactg ccgcacttca tccgttgtca tatctgccgt
     6181 taaagacagg cggattctgg atgtgttttt aggtactgtc ggcggtctga tgggcaggca
     6241 ataataaccc tgcctttgca gatattccgc tttggcaagg gcggcttcat tcccgcctaa
     6301 aatatagggg acgatacagg tttggctcgg cattatttgc gtccgatgcg ccacttcccg
     6361 ccgtaaaaat gcacttaact gctcaagatg gcttctttct tttgagaatt gcggcaatcg
     6421 ttcaaaaata aaataagtcc aagccacatt aaacggcggc aatgcggttg aaaaaatcaa
     6481 tgggcgcatt tgattaatca aacattcttt caatacttgg ttgcagacgg catacgcccc
     6541 caccgaggct aaggctttac cgaaagtgcc gaccaataaa tcaatctcgg caatcaaatt
     6601 atcccgttcg gcaatcccca atccgttttg cccataaaca ccgattgcgt gggcttcatc
     6661 cacataaaga taagtattgg gaaactgttt ttttaattgg acaagctgtt tcaaatccgc
     6721 cacatcgccg tccatactga aaacagattc ggtaacgata aaagtgcggt caaattttcc
     6781 gacgtttttt tcaagcagat ttttcaaatg ttcataatca ttatgacgat aacggaaaaa
     6841 cgcacaccgg ctcaaacgga tgccgtcaat catactggcg tggacaaatt tatctgccaa
     6901 aatcaaactt ttcgtcgtcg tcaaagcagg caaaataccg agattggcgt gatagccgct
     6961 gttgaacaat aacgcgcttt cccgttggaa acgttgtgcg acaagctctt ccaaatcggt
     7021 ataaatagga aagttgcccg ttaataaacg cgatgaagaa ctggtaaaag agggaaaatt
     7081 accgccgtat tgctgcaaaa aagaccggcg caagttttca tctgatgcca aacccaaata
     7141 atcattagac gacatattca gcattttgcg gttttcccgc gtaatatacc gcccttgatg
     7201 aatcaaatcc ggaatcgaac gatattggtt ttgcgcgccg agttgttcaa gctgttgttt
     7261 aaaaaccttc attatgatgt aaatattcct gagttaaagc ctgaaccaac ccagcatcaa
     7321 acaatcaagt aatgccctgt taataaaaac cgttttgccg ccgacctttg ccacacccct
     7381 gccttcataa tccaaggcgg aaatttccgc gacatttgtt tccgttgcca ttacccaatc
     7441 cgtccgcact gtaccgaagc gcatattttc gcacaaattg gtacggtttc aggtatgatt
     7501 tgccgaaaac ctatcggaca cacaccatat tttgatatga ataaaacaat ctgccgcact
     7561 gctgcactat tgataagcgg tttttcatac gcaaacaccg tcattcccga tgtctccccc
     7621 gtcgcacaag gtcaacatgt cttcattaac atccctcagc aacgcctgtt cctctacacc
     7681 gacggcaaac tgaccaaggt ttatcccgtt gcagtaggtc gggcgatgac gcaaaccaat
     7741 ctaggcgaac ataaaatcgg tgcgaaagcc tataaccctg tttggtacat ccccaaatcc
     7801 atacagaaag aacgcggcga cggcgtaaaa accatagccg ccggcccgga caaccctttg
     7861 gggccggttt ttgtccgctt aggcgacccc aaactcggtt tgggcataca cgggaccaat
     7921 gcgccggcca gcgtccccgg ggttcggagt cacggctgca tccgcatgaa atcgcccgac
     7981 gcgctcgagt ttgccaaaac catcgccagc ggctcgcccg cctccgtcat ctatcaaatg
     8041 gcggggctca atgaagatgc ggatcgcaac ctgtggcttg ccgccttccg cgacccttac
     8101 ggtaagaaca accttgacat cgcctctctg aaaaaaagta ttgcgcaatg ggcaaaaaca
     8161 cagggtaaaa ccatcgcgcc cgagaaagtc gatgctgtac tcaaagaccg caccggatcg
     8221 gccgtctgcc tgacctgcgg caaaaacggc aagatgaaga tgccgctcaa atcgctggcg
     8281 tggatacagg gttcttcctc atacagccaa gctgaagtca ttgaacaaac tgaggaaacc
     8341 aactctgccg aaatatccga gacacgcacg cccgaagtgc ctgatgtaca cacgcccgag
     8401 gcgcaaccgc atttaaatac ccaatccgac ggcacgccga ctgcctatac cgaaccggct
     8461 gccgattcat cgccgcaagt agaaacacct gatcaggctg cttccgagcc ggttgatgta
     8521 ttattttcaa tagatgtgat acggcaggga aatttgcgtt taggtaattg aataaccttc
     8581 tgattattta atgcttatgt ttatcagaag ttgataggcg gtttggtttt tgtttgactt
     8641 ttcctacacc gccgcctgcc gctttctgca acattcaagc gcacaaatat gccatctgaa
     8701 ggctttagac ggcatatttc acgataatag tcgcccaatc aaataaacac agattggaaa
     8761 tttattttat ttttccctta ccaatacccc agaactttcc accaaatgct gccgataacg
     8821 aaaaaaatca gaaaattgac tacgctcatg ataaaacccg ccttccacca ttctcccatt
     8881 gtggtgtagc ccgaaccgaa aatcacaggc gaagtaccgg tcgcataatg agtgagggtc
     8941 atcataatgt tggatgcggc cgccatcatc agcgcggtcg gcatcgccgg tgcattcagt
     9001 gaaacggcag cagcgagaaa tgcgccgaac atagcggtaa tatgtgcagt agtactggca
     9061 aacatataat gcgcatacat ataagcaagc acgaggatta cgcccgcagc cgtgccgcta
     9121 acgcccaaac cgccgacact ttccgccaac actccggaga accatttaat cagtccgagt
     9181 ttatttaaaa atgcggccat cataatcaat gcgccaaacc aaataatcgt atcccacgca
     9241 cttttttctt tcaaaacatc gtcccaagtc aatacaccgg aaagcaaaag caggcttaat
     9301 ccgataaatg cggtggcggt ggcgttgata ctaaaagcgt gattgccggt aataagggcg
     9361 ggaacatctg cccacaacag cagcaagata ccgaaaatga ccgccataat gatttcgtct
     9421 gccgacattt tacccatctc cctcagacgg tctttggcaa attgaacggc attgggcgtt
     9481 tctttaattt caggcggata caaaaaatat aaaatcaaag gcataacgaa aaaggcgata
     9541 acgccgggaa cagccattgc ccacgcccac gccccccaag aaagacggaa actactgcct
     9601 aaattttcgg caatcaagtt gacgattaaa gggttggggg cagttgcagt aataaacata
     9661 gccgacgaaa tgggattgga atgatagttg accaaagcca aatatttacc catcttgcct
     9721 tctgtgcctt ttgcgggatt ggagccgtaa ctgccggcaa tcgactgcat aatcggatgt
     9781 ataatgccgc cgccgcgcgc ggtattggaa ggggtaacgg gagccagcag cagttcggaa
     9841 agagcgagac tgtaaccgat gcccagcgtt tttcttccaa aaacggcgat aaacaaatat
     9901 ccgatacgca tccccagccc tgttttgagc aaaccgcgcg aaatcataac tgcgatggca
     9961 atcagccaaa tcaacggatt ggcgaacgca ctcaacgcat cgctcatcgc cgcgcccggt
    10021 ttgtcggcgg ttacgccggt tactgcgacc aacccgacgg caataatcga cagcgcgccc
    10081 aacggcatgg ccttgccgat aatggcggca atcacaccga caaacatggc cagcagcgtc
    10141 caagcctgag gcttgacccc gtcgggtacg ggcagtgcca aaaccagggc gcacaatact
    10201 gcggcaatgg cgaggggtat cggtttgaaa cccaatttca tcatattgac ctccgtaaaa
    10261 aagaccgtcc cgaaaaatcg gaaaaataat atttaactaa ttgttttata agatatattc
    10321 cgatatttca ccgtctttcc gatatgcggc tccgggcaac ttttgtttca gtatttgaat
    10381 tttcattaga ctgaatacgc cgtttgaacg gcacggcgaa aacccggggg atgccggacg
    10441 ttcagtcctt tttcgcacct tgaaggtaaa gcatttccaa ggcaattgtg gcaccggcca
    10501 aagcggtaat gtcggattgg tcgtaagagg gggcaacttc tacaacatcc ataccgacga
    10561 tgtcgagatc cgtcagccca cgtaggattt ttaatgccct gtcgctgctc aagccgccgc
    10621 atacgggcgt accggtccca ggggcgaacg acgggtccag gcagtcgatg tcgaaagtca
    10681 ggtaaacggg catattgccg acggtttctt tgattttacg gacggtctct tcaacactgt
    10741 cttcattgac ttggggggcg gtcaacacag taaaaggcaa ttttttactg tgttcggtac
    10801 gtatgccgat ttgcacggaa tgtgccggat cgatgatgcc ttccttgggg gcggtataaa
    10861 acatcgtacc gtggtcgtat tcgctgccgt tgtcgtaggt gtcggtgtgc gcgtcaaaat
    10921 gaatcagtgc gagtttgccg aaatagcggg cgtgggcgcg caacaacggt agggtaatga
    10981 aatggtcgcc gcccaaactc aaacagcgtt tgccggaaga aagtaatttg ccggcgtgcg
    11041 cttccatttt ttcgacaaaa tccctgctgt cgccaaaaga aaaaaccaag tcgccgcaat
    11101 caataatgtt caggcgttcg cgcacatcaa atgtccatgg aaacctgcgg tgctcccaag
    11161 cgaggttgac ggaggcgcgc cggatggctt caggaccgaa acgcgcgccg gaacgccctg
    11221 aaaccgccat atcataaggc acgccggtaa taacccaatc ggcatgactt tcatacggca
    11281 taaaattaag cggcaggcgc aaaaacccga aattattgga aacgagggag ttgtcggttt
    11341 gtcctgccag tgtgctgtat tgcatcgtaa tgattccttg taattggttt caatcggtcg
    11401 tgatgattgg tgtttgagta agaaaatcgg gcttcagacg acatatccga tgccttgatg
    11461 cgtctattcg tcttccaaat aggtataacc attaagcccc gcttcgagtt cttttaagaa
    11521 agacatagcc tgcgaggcag gaaggtctga atgttcgatt tgttcgcgat agcgtttcat
    11581 cagctctttc ggatcttgat aaacgtattc gagcatatcg gcaacggtgt ttccttcatc
    11641 gtaatcgatg acggtaaatt gtccgtcttc ccctacaaca acatcggcag tggcagtgtc
    11701 gccgaaaaga ttgtgcatat tgccgagtat ttcctgatat gctcccacca taaaaaagcc
    11761 taaaagcggc ggctcttctt cgggataatc aggcataggc atcgtaccgg cgatgccgtc
    11821 gccgtcgatg tagtggtcaa tcgtaccgtc tgaatcgcag gtaatgtcca acaacacggc
    11881 gcggcgcgca atcggttcat tcaaaccggt aatgggacaa acagggaaaa gttgatctat
    11941 gccccaagca tcgggcaaag attggaagag tgagaaattg acatacagct tatcggcaaa
    12001 acgttcttgc aattcgtcaa taatggttcg gtgagaccgg tgtttttcat taaacaattc
    12061 gccgacttca tgacagatat ttaaatacag ttgctccgcc cacgcacgtt gcgccaaact
    12121 caacagcccg acattatact gattatgcac atcggcaaga tcaaactgcc cttcgtgtat
    12181 ccagctgcgt aaggaacgtt tttcccgcga ggcggaaata tccgtccaag tttcccacat
    12241 actgtgcaac acacgcggcg cttcgggcga tggcgcatcc agccggcgcg gtttgtaacg
    12301 ttcaacgcct ataacattag caaccaaaac ggcgtgatgt gcggtaatgc cgcgcccgct
    12361 ctcggtgatg attgtcggat gcggcagccc gtgttcgaga caagcctgac tgatgcccca
    12421 tacgactgtg gcggcatatt cgttgaggct gtaattaacg gaacaatccg attgtgtgcg
    12481 gtttccttcg taatccacgc caagcccgcc gcctacatca aaacagcgga tatttacccc
    12541 cagtttgtgc aactcaacat aaaaccgagc cgattcgtgt acacctgtgg caacatcacg
    12601 gatgttccca agctgcgagc ctaaatggaa atgcaaaagc tgcaggcagt ccagcctgtt
    12661 tttttgtttc aaaatatcga ccagttgcaa aacttgggaa gccgacaagc cgaattttga
    12721 tttttcccca cccgaagact gccattttcc cgaaccttgg gaagccagtc tggcgcgcac
    12781 acccaaacgg ggcttgatgc cgagtttttc cgcctcttcc aataccattt gtatttcgga
    12841 cagcttctca atcaccaaat aaacctgatg ccccagtttt tcgcccatca aggcgaaacg
    12901 gatatattca cggtctttat agccgttgca gacgattaat gtttgccggg tgccggcgtg
    12961 tgccaaaacc gccatcagtt cggctttaga accagcttcc aaaccatgcg gttgtccgct
    13021 tgacataagc gattcgatga cgcggcggtg ttggttgacc ttgatagggt aaaccaaaca
    13081 ataaccgccc ttatagccgc actcttcccg tgccgtctga aaggcgcggt taatgtcgcg
    13141 gaggcggtgt tcgaggattt gcggaaaaca aaacaaaaca ggcaggcgcg cctgatgttt
    13201 ttgttgcacg gcttcagtca gtttttgcag tgaaacaatt tgattgtgtt gcgagggatt
    13261 ggggcggacg atgatttcgc cagaatcgtc aacatcataa taacctatgc cccaatgatt
    13321 aatgttgcac acttcacgga tggtaaggat aggcataata aacctgctcc gtctgtcgtg
    13381 ttgaaaagga atgattataa caaatcagcg tgaaatgtca tttttttaat aagaaaagcc
    13441 tgcctcatac ctgataagga acaggcaaaa tgccgtctga acgcttcaga cggcattttg
    13501 gttcagcttg ccatcaaagg agtcagcgat cgagctgctc tttgatgatt ttcaggtcgg
    13561 ggtaagacaa cacgatgtcg tattcgcggc cgtctttata ggcttccact tccaaaacag
    13621 gtttgcccca atggtcgtcg gcatcgacat cgtgaacctg ataaccgcgc tgctctaaca
    13681 ttttcacggc ttttgtgcgg ttttgttcaa aatggggatc accgtaaatc tgacgctcgg
    13741 cagagtcgcc ggcaaatgcg gcagcggcac tcagagaaac aacggcagcc aataacagtt
    13801 ttttcatttt cagtcctttt tttatcggtt gattgaacaa gatgtgtttt tcaataccgc
    13861 cattaaaaca cagcaaaatt aggtttgaat tagagggaag tcaagaagcg taaatgccgt
    13921 ctgaaaaaaa cagagccgtc aaacggctcc gttttcctta tgcttctttg gtttcagcca
    13981 ccttttggcg caggcgcagg ctcaattcgc gcaactgctt gtcgtccacg ctgttgggtg
    14041 cattggtcag cagacattgt gcacgttgtg ttttcgggaa ggcaatcaca tcgcggatag
    14101 attcggcgcc ggtcatcagg gtaaccagac ggtcgagacc gaatgcaagg ccgccgtgag
    14161 gaggtgcgcc gaatttcagg ttgtccaaga ggaagccgaa tttttcttgt tgctcttcag
    14221 ggctgatttt cagcgcggca aacactttct cttgtacgtc tgcgcggtgg atacggatag
    14281 agccgccgcc gatttcccag ccgttcaata ccatgtcgta ggcacgtgcc aaacaatttg
    14341 ccggatcgga aaccatcagg tcttcatgac cttctttagg cgcggtaaac ggatggtgta
    14401 cggcaacgta gcggtcggct tcttcgtcgt attcgaacat tgggaagtcg acaacccaca
    14461 aaggtttcca ttcgtctgtg aaatagccgt tgtctttgcc gtgttccaaa ccgactttga
    14521 tacgcaatgc gccgatggct tcgttcacga ctttggcttt gtccgcaccg aagaagatga
    14581 tgtcgccgtt ttgcgcgccg gtacgcgcaa tgatttcctt cagggcgttt tcagacagga
    14641 atttcacaat cggagattgc agaccgctgt cttcgccgtt ggagaggttg cccacatcgt
    14701 ttactttgat gtatgccaga cctttcgcgc cgtagatgcc gacaaattta gtgtattcgt
    14761 cgatttcttt gcggctgaat ttcgcgccgt tcggtacacg cagagcgact acgcgaccgc
    14821 ctttcatgtc ggctgcgcca cggaagactt tgaattcttc cgttttcatc aggtcggtca
    14881 actcggtgaa tttcaagttg atacgcatgt ccggtttgtc agagccgtag tagaacatgg
    14941 cttcagagta aggcatgcgt gggaaatcgc ccaagtccac gcccaatgca tcttggaaga
    15001 cttgtttcgc catgccttcg gtgatatcca tgatttcatc ctcgtttaag aacgaggttt
    15061 ccaagtcgat ttgcgtgaat tcaggctgac ggtcggcacg caagtcttcg tcgcggaagc
    15121 acttggtgat ttggtagtaa cggtcgaaac ccgccaccat caacagttgt ttgaacaatt
    15181 gcggcgattg cggcagcgcg aagaactcgc ccggatgaac gcggctcggc acgaggtagt
    15241 cgcgcgcgcc ttcgggcgtg gagcgggtca gcatcggcgt ttcaatgtcg atgaagcctt
    15301 gtgcgtccaa gtagcggcga acgcccatag caacttggta acgcaggcgc aggttgcgtt
    15361 gcatcaccgg acggcgcaag tcgataacgc ggttggtcag gcgaacgttt tcgctgatgt
    15421 tttcatcgtc gatttggaac ggcggcgtgg cggcggcgtt caagacttcg atttctttgg
    15481 caaggatttc gattttgccg gaaatcattt tatcgttggt cgtgccttcg ggacggttgc
    15541 gtacgcggcc ggtaatgctc aaaacgtatt cgttgcgagc ggaatcggca gcggcaaacg
    15601 cttcgggcgt gtcgggatcg atcacgactt ggacgatgcc ttcgcggtcg cgcaggtcga
    15661 taaaaatcac accgccgtgg tcgcgccggc ggtgcaccca gcctttaacg gtaacggttt
    15721 ggtctaagta ttgctcgctg atcaggccgc aatagttggt acgcataaaa tcacctttta
    15781 ttgatttaaa ctgaaaacag aaaatgccgt ctgaacggcg gctttattgt tgttcgggca
    15841 aatccgcctt ttcagacggc ataggtcctg ccaatgtttt gacgggcagg tcgtcaggaa
    15901 tgaccatacc cagcgaaatc acatatttca acgcttcgtc cacgctcata tcgagttcgc
    15961 gcacatcgct tttctttacc ataatatagt aaccgccggt cggattcggc gtggtcggga
    16021 catacacgga aagataatcg ccgtccttcg gcaatgcggc cttaaccgca ttcgacacct
    16081 gccctgacac gaaagcaatc gtccaaatac ccgattgggg aaacggcacg agtaccggcg
    16141 ttttaaacga gcggctgctg tcggacagca gcgattcgga tacttttttc acactcgagt
    16201 agatggattt gacaaccgga atccgcccca acaggctgtc ccacgcggca agaatctgcc
    16261 ggcccaatac gttggcggca aataatccgg ttacaaacaa tacggcaatg gcaacaataa
    16321 cgcccagccc cgggatattg aagcccaaaa catattgcgg ccgccattgc ttcggcagca
    16381 ggttgacgag ctgatcggac gcggaaacga tataggaaac cacccaaacc gttaccgcaa
    16441 tcggcagcca gaccaaaatg cccgtaatca gatatttttt taacgccttg gcagctttac
    16501 cgccttcggc cgcaggttcc gtcatcttgc ttgattccga caaagtccgt acaaaccgca
    16561 cattatacgc gtttgcccgg attcaaacga aatttttatc ccgccccgcc aaaccgccgg
    16621 cggcttcaga cggcacggca acttgatata ccgtctgaac acgcggttca gatgccgtcc
    16681 aagtcgttga acatcaaccc gataccgata ccgttctgct tgtggttgta gtcgatcagg
    16741 ctctcgccgt aaccgtggaa tccgcgtacc acgcctttga gtttgccctt aatcggaaac
    16801 gtgtaggcgg cttcaatcgc gccgtagccc gttttggggt tgtagcgcaa tacggaatac
    16861 acattctgcc tgtcgttcag gcggtactgc agcttcacgt cgccataccc catatagtcg
    16921 gcaatatcgg gattgtcgtt tttatcgccg ctctgatcga acgcacgcac ccacacgcgc
    16981 ggaatcaccg tcaatttgcc ccattccatg cctgccatgg cgtaaatcct gttccacgaa
    17041 cgcgattcgg gacggctctg tccgttggac tggtggacaa aacccgcacc gagcatacgc
    17101 agcctgccgc cgaacggcaa atccgccttc acaggctggg tcaggaaaat ttcaggtttg
    17161 taatccgtat tgcggaacgg cgcggatttc ctgccttggt tgtaaatctg ccaatcggat
    17221 ctttgggtgt agccgaacca cagatccgcg cgggttttaa acaaatcttc ggcaattttg
    17281 cttttgaacg aaacctgcaa tttggtttcc gcacgtttct gctgtccgaa tttttcctgt
    17341 acagtcgtac cgcgcgtcgg cgaactcggg gcatagttgg gcgaattgtt gtaccagagc
    17401 ggcataaggt acatcggatt gtgttcgcgt acgcccaaca gcccgcgcaa atcgtttttg
    17461 tccaagtcgt acatcaggct caaaggcgta tagatgtcgg cggtttcgcc cgcactgtcg
    17521 gcaggaagcg catccccgcc tttttcaaca acaatgaccg cctcgccctt atccaggctg
    17581 ctgcggacgg tttccgtcag attgagtaca gctttcgact cctgcccttc ctgtcctgcc
    17641 gaagacggaa gctgtgccgc aaaaatcctg tcgtaacacg ccaaacgcgt aacattgtcc
    17701 gtcaaagcgg cgcattgcag cgcggtctct ccaaaagcgg atgccatcgg caacagtcct
    17761 gtcaaaagaa tatagcgcat attccgtgta ttcatctccg cccccattgt cggcatattg
    17821 gttttcaaac ggcattttat agcggattcg gataaaaaac cgcacccttt ccgccatttc
    17881 gggatttagc ccccgtaata cagaaaaccc cgagaccgtc aggcttcagg gttttccgct
    17941 tatcgcgtat caaccgcctt ggcggttttg caaaaatcaa gccagtgctt ttacttttgc
    18001 agacagacgg cttttgtggc gtgccgcttt gtttttgtgg aacacgccct tgtcggcgat
    18061 gcggtcgatg actttgacgg actcttggta aaccgcttgt gcggcagctt tatcgcctgc
    18121 ttcgactgct ttcaatactt ttttcactgc agtgcggaat gcggtacgca ggctagcgtt
    18181 gtgggcgcgt tgtttgacgg actggcgggc acgtttacgt gcttgtgcgc tgtttgccat
    18241 attggaatct cctagaagaa aaataaattc tgtaaacgcg caattttaaa gggggtttac
    18301 attatatgca agccttttct ctctatccgc ccgtcggaca ccctgacagc gcaaaaaaac
    18361 ggcaaaatcg tgcggacgtt ttccccctct tttgaaaaca gggtaatttt ttagggaaat
    18421 cagtccaata tcactttgag tttgcacaaa tttactttac aatgcccaaa ccttgcgccg
    18481 gggtgtttat ggggcgcggg gttttctttt tttccaacct ctttcatcag gaatctgccc
    18541 gtatgaaaaa atccgtatta gccgttttgg ccgcgctgtc tctggcagcc tgcggcggca
    18601 gcgaaaaaaa cgccgtgcaa cctcaagcag acgctgcgtc tgctgccaat gccgaagccg
    18661 ctgccaccga tactctgaac atctacaact ggtcgaacta tgttgacgag agtacggtcg
    18721 aagactttaa aaaagccaac aatctgaagc tgacttacga cttgtacgaa aacaatgaaa
    18781 cgctggaagc caaaatgctg accggcaaat ccggttacga tttggttgtg ccgggcatcg
    18841 ccttcctgcc gcgccaaatc gaggcgggcg cgtatcaaaa agtcaacaaa gacctgattc
    18901 ccaactataa aaacatcgat cccgaactct tgaaaatgct ggaaaccgcc gacccgggca
    18961 accagtatgc cgtcccctat ttctccggcg tgaacacgat tgcgattacg gcgaaaggca
    19021 aagagctttt gggcggcaag ctgcccgaaa acggctggga tttgctgttc aaacccgaat
    19081 acacccacaa gctgaaatcc tgcggcatcg ccctgtggga caccccgagc gaaatgttcc
    19141 cgattttgct gaactacttg ggcaaagacc ccaaaggttc gaatcctgaa gatttgaagg
    19201 cggcggcgga agtgttgaag tctatccgtc cggatgtcaa acgtttcagc ccgtccatca
    19261 tcgacgagct ggcgcgcggc gacatctgcc tggcggcagg caacggcggc gatttgaact
    19321 tggcgaaagc acgttccgaa gaagtgaaaa acaacgtcgg catcgaagtg ctgaatccga
    19381 aaggcatggg cttctggatt gagtcttggc tgattcccgc cgatgcgaaa aacgtcgcca
    19441 atgcccacaa atacatcaac tacacgctcg accccgaaat cgcggcgaaa aacggcatcg
    19501 ccgtaacctt cgcccccgcc agcaaaccgg cgcgcgaaaa aatgcctgcc gagctggtga
    19561 acacccgttc catcttcccg aacgagcagg atatgaaaga cggtttcgtg atgccgcaaa
    19621 tgagtacgga tgcgaaaaaa ctgtctgtca gcctgtggca gaaaatcaaa gtcggcacca
    19681 actgatttga agcattaaaa atgccgtccg aacatcgttc ggacggcatt ttatattgga
    19741 ttgaaataga aatat
//
LOCUS       DAXHPV010000023        19295 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.023, whole genome shotgun sequence.
ACCESSION   DAXHPV010000023 DAXHPV010000000
VERSION     DAXHPV010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 19295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19295
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.023"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..460
                     /locus_tag="ACFM6C_000586"
     CDS             <1..460
                     /locus_tag="ACFM6C_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="opacity family porin"
                     /protein_id="HFC6158084.1"
                     /translation="VLRNQGNWQELKTENQENGSFHASSSLGLSAIYDFKLNDKFDKF
                     KPYIGARVAYGHVKHQVHSVRKETTTVFSKPSGSVTKPGEIVQGPTSKPPYHESNSIS
                     SLGLGVIAGVGFDITPKLTLDTGYRYHNWGRLENTRFKTHEVSLGVRYRF"
     gene            complement(434..643)
                     /locus_tag="ACFM6C_000587"
     CDS             complement(434..643)
                     /locus_tag="ACFM6C_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158085.1"
                     /translation="MPSERLSDGIFPCVLNRVHETPDAFGGNVGCRAMFGGDQRTKCA
                     GKGLMPSEGSDGIGVGESEAVAHAQ"
     gene            complement(661..1218)
                     /locus_tag="ACFM6C_000588"
     CDS             complement(661..1218)
                     /locus_tag="ACFM6C_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HFC6158086.1"
                     /translation="MDALKLLTNRRSSKKLKPPAPDAAELEQIFQAATQVPDHGNMCP
                     FRFTVIQGEVGLQRFRDVLKQTVAELNFGDDAMKKAEKVGNMAPMVIGVTFAPNRDVP
                     KPKPEWEQMLTAGCAAYALQLAATAQGFDNVWITGMWVNSPLLREAFGCADKDKIIGL
                     MMVGTPTEEVHKPKNTDLEAFVSHW"
     gene            complement(1294..2928)
                     /locus_tag="ACFM6C_000589"
     CDS             complement(1294..2928)
                     /locus_tag="ACFM6C_000589"
                     /EC_number="2.7.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:1900727 - osmoregulated periplasmic glucan
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HFC6158087.1"
                     /translation="MIKPNLRPKLGSSALIAFLSLYSSLVLNYAFFAKVVELHPFNGT
                     GADIFLYTMPVVLFFLSNFVFHVIALPFVHKVLIPLILVISAAVSYQEIFFNIYFNKS
                     MLNNVLQTTAAESARLITPGYVLWIVCLGVLPALAYIAVKVKYRVWYKELLTRLVLAA
                     VSFLCALGIAMLQYQDYASFFRNNKSVTHLIVPSNFIGAGVSKYKDWKRSNIPYTQLD
                     MAVVQNRPAGSLRRFVVLVVGETTRAANWGLNGYSRQTTPLLAARGDEIVNFPQVRSC
                     GTSTAHSLPCMFSTFDRTDYDEIKAEHQDNLLDIVQRAGVEVTWLENDSGCKGVCGKV
                     PNTDVTSLNLPEYCRNGECLDNILLTKFDEVLNKNDKDAVLILHTIGSHGPTYYERYT
                     EAERKFTPTCDTNEINKCTRATLVNTYDNTVLYVDQFIDKVIRKLENRDDLESVVHYV
                     SDHGESLGENGMYLHAAPYAIAPSGQTHIPMVMWFSKAFRQHGGIDFQCLKQKAAENE
                     YSHDHYFSTVLGLMDISNSQTYRKEMDILAACRRPR"
     gene            complement(3209..4315)
                     /gene="serC"
                     /locus_tag="ACFM6C_000590"
     CDS             complement(3209..4315)
                     /gene="serC"
                     /locus_tag="ACFM6C_000590"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HFC6158088.1"
                     /translation="MSLYPIYNFSAGPAVLPEAVLETARQEMLDYNGTGFPVMAMSHR
                     SEMFLSILHHAEQDLRQLLKVPDNYKILFLQGGATTQFNMAAMNLAHGFRTADAVVTG
                     NWSRIAYEQMSRLTDTEIRLAAHGGEQFDYLDLPPVETWDVAPDSAFVHFAVNETVNG
                     LQYREVPRLSEGMPPLVCDMSSEILSREFDVADYGLIYAGAQKNIGPAGVTVVIVRED
                     LLERCPNDIPDVFNYRSHLNRDGMYNTPSTYAIYMSGLVFRWLQAQGGVKKIEAVNRL
                     KAQTLYETIDGSGGFYINRIRPNARSKMNVVFQTRDEELDRRFVLEAELQGLCLLKGY
                     KSVGGMRASIYNAMPLEGVRALADFMRDFQRRYG"
     gene            4680..5111
                     /gene="rimP"
                     /locus_tag="ACFM6C_000591"
     CDS             4680..5111
                     /gene="rimP"
                     /locus_tag="ACFM6C_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003685973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042274 - ribosomal small subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HFC6158089.1"
                     /translation="MDIQTILEKTLPGLGYELVDFELTAQGTLRVFIDKESGITVEDC
                     ATVSNHLSRVFMVEDIDYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQK
                     NFIGKIEGCENDTVTVSFDGKTVQIELGNIDKARLRPEFKF"
     gene            5139..6641
                     /gene="nusA"
                     /locus_tag="ACFM6C_000592"
     CDS             5139..6641
                     /gene="nusA"
                     /locus_tag="ACFM6C_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HFC6158090.1"
                     /translation="MSREMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHM
                     DVRVQINRDTGEYQTFRRWLIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQL
                     PNEGFGRQAAQTAKQIILQRIRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVV
                     AGKLDALIPRDQMIPRENFRSGDRIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYA
                     NEVPEIADGMLEIRAVARDPGQRAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSG
                     ERIDVVLWSPEPAQFVMSALSPAEVSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVR
                     LASDLTGWQLNIMTSAEADERNAAEDAAIRRLFMNHLNVDEETADVLVQEGFATLEEV
                     AYVPAAELLAIEGFDEEIVDMLRNRARDAILTMAIAAEEKLGEVSDDMRNLEGIDADM
                     LRSLAEAGITTRDDLAELAVDELIEITGVNEETAKAVILTAREHWFTEDK"
     gene            6653..9541
                     /gene="infB"
                     /locus_tag="ACFM6C_000593"
     CDS             6653..9541
                     /gene="infB"
                     /locus_tag="ACFM6C_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HFC6158091.1"
                     /translation="MSNTTVEQFAAELKRPVEDLLKQLKEAGVSKNSGSDSLTLDDKQ
                     LLNAYLTKKNGSNSSTISIRRTKTEVSTVDGVKVETRKRGRTVNIPSAEELAAQVKAA
                     QTQAAPVRPEQTAEDAAKARAEAAARAEARAKAEAEAAKLKAAKAGNKAKPAAQKPTE
                     AKAETAPIAAETKPAEESKAEKAQADKMPSKKPAKPKEKAAKPKHERNGKGKDAKKPA
                     KPAAPAVPQPVVSAEEQAQRDEEARRAAALRAHQEALLKEKQERQARREAMKQQAEQQ
                     AKAAQEAKTGRQRPAKSAEKPQAAAPAVENKPVNPAKAKKEDRRNRDDEGQGRNAKGK
                     GGKGGRDRNNARNGDDERVRGGKKGKKLKLEPNQHAFQAPTEPVVHEVLVPETITVAD
                     LAHKMAVKGVEVVKALMKMGMMVTINQSIDQDTALIVVEELGHIGKPAAADDPEAFLD
                     EGAEAVEAEALPRPPVVTVMGHVDHGKTSLLDYIRRTKVVQGEAGGITQHIGAYHVET
                     PRGVITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTIEAIAHAKAAGVPM
                     VVAVNKIDKEAANPERIRQELTQHEVIPDDWGGTVQFIDVSAKKGTNIDALLEAVLLE
                     AEVLELTAPVDAPAKGIIVEARLDKGRGAVATLLVQSGTLKKGDMLLAGTAFGKIRAM
                     VDENGKSITEAGPSIPVEILGLSDVPNAGEDAMVLADEKKAREIALFRQGKYRDVRLA
                     KQQAAKLENMFNNMGETQAQSLSVIIKADVQGSYEALAGSLKKLSTDEVKVNVLHSGV
                     GGITESDVNLAIASGAFIIGFNVRADASSRKLAENENVEIRYYNIIYDAIDDVKAAMS
                     GMLSPEEKEQVTGTVEIRQVISVSKVGNIAGCMVTDGVVKRDSHVRLIRNNVVIHTGE
                     LSSLKRYKDDVKEVRMGFECGLMLKGYNEIMEGDQLECFDIVEVARSL"
     gene            complement(9645..10985)
                     /locus_tag="ACFM6C_000594"
     CDS             complement(9645..10985)
                     /locus_tag="ACFM6C_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3482 domain-containing protein"
                     /protein_id="HFC6158092.1"
                     /translation="MNKQPLSLAVVGHTNTGKTSLLRTLLRDSGFGEVRNAPSTTRHV
                     EEAAISDGADMLVFLYDTPGLEDAGGVLEWLENHTDNRSDGIERLQQFLGSHGAHHDF
                     NQEAKVLRQVLQSDMAMYVIDAREPVLDKYRDELIILSWCAKPVMPVFNFTGGQPPES
                     WTTMLARRNLHVFAGFDTVAFDFEGELRLWENLATMLPERSTLDRLTAMRRREWQRLD
                     GEARREIADFLLDAAAFRQEVDENEDTATVLQTMQAEIRQLERQMQQRLFALYRFYHS
                     EIDGGDWMPQAFRQDPFDSELLKQYGIRIGTGAATGALIGLGLDIATFGGSLGLGTAI
                     GGFLGGILPNTRTISDKLTGRQTLHTDPETLTLLAARALGLLHVLQTRGHAAQSDIEL
                     HSRKAPWDAARLPPELNKARSHWKWSSLNTHRPETSRAERAGYVEKLQIRLSGK"
     gene            complement(11047..12396)
                     /locus_tag="ACFM6C_000595"
     CDS             complement(11047..12396)
                     /locus_tag="ACFM6C_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2868 domain-containing protein"
                     /protein_id="HFC6158093.1"
                     /translation="MLNPSQKLVELVRILEEGGYIFSGDPVQATEALRRVDGSTEEKI
                     IRRAEMIDRNRMLRDTLERVRVGSFWLWVVAASMMFTAGFSGTYLLMDNQGLNFFLIL
                     AGVLGMNTLMLAVWLATLFLRVKVGRFFSSPATWFRGKDPVNQAVLRLYADEWRQPSV
                     RWKIGATSHSLWLCTLLGMLVSVLLLLLVRQYTFNWESTLLSNAASVRAVEMLAWLPA
                     KLGFPVPDARAVIEGRLNGNIADARAWSGLLVGSIACYGILPRLLAWVVCKIFLKTSQ
                     SKLDLEKPYYQAVIRRWQNKITDADTHQETVSAVSPKIILNDAPKWAVMLETGWHEGT
                     WFEGRLAQEWLDKGVAANREQVAALETELKQKPAQLLIGVRAQTVPDRGVLRQIVRLS
                     EAAQGGAVVQLLAEQGLSDDLAEKLEHWRNALTECGAAWLEPDRVAQEVRLKTNDRT"
     gene            12540..13166
                     /locus_tag="ACFM6C_000596"
     CDS             12540..13166
                     /locus_tag="ACFM6C_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HFC6158094.1"
                     /translation="MYTGERFNTYSHLSGLILAAAGLALMLLKTIGHGDGYRIFSVSI
                     YGISLLLLYLSSSLYHGIAAGKLKSILKKTDHCMIYVLIAGSYTPFALVSLRNGPGWT
                     VFSLSWLLAAAGIAQELTIGRKSEKRLLSIAIYVVMGWMVLAVMKSLTASLPLAGLAW
                     LAAGGMLYSVGIYWFVNDEKIRHGHGIWHLFVLGGSITQFVSVYGYVI"
     gene            complement(13230..14648)
                     /locus_tag="ACFM6C_000597"
     CDS             complement(13230..14648)
                     /locus_tag="ACFM6C_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005283 - amino acid:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine/glycine:cation symporter family protein"
                     /protein_id="HFC6158095.1"
                     /translation="MENILSVLVGTVNRFLWDYLLIYALLGIGLFFTLYLGAPQITKL
                     GAGFKSVFGGLFAKGDKDDKSLSQFQALAVAISAQIGTGNVAGVATAITAGGPGAIFW
                     MWVSAVLGMSTIFAEALLAQKYRVVSHGKYIGGPAFYITHGLTPKIGRGAARFLSGFF
                     SIALIIALGFIGNATQANSIASAVTIAFDVPSLAVGIVLAVLAGMVVIGGVNRIANIA
                     QFVVPFMAVVYILCAVVILFEFSDYIVPMFNHIFTAAFNPEAVLGGAAGIGMREAIRF
                     GVARGLFSNEAGMGSTPHAHATADVKHPVQQGMAAFVGVFIDTILVCTATALIILLTD
                     ANLSGEQGAAVTQFAFNKAFPGFGSQLLAVCLTFFALTTIIGWYYFGESNIRFLFRGR
                     HLGIYRALVLLAIVLGTLGKVDLVWSLSDMFNGFMVIPNLIALFLLRKEIRAIYDDYL
                     AQKKAGRDLSYQYEFHEFHDKG"
     gene            14975..15703
                     /locus_tag="ACFM6C_000598"
     CDS             14975..15703
                     /locus_tag="ACFM6C_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004285004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HFC6158096.1"
                     /translation="MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPG
                     SNPRLRLALEKAAENNMPKDNVQRAIDKGTGNLEGVEYIELRYEGYGIGGAALMVDCL
                     TDNKTRTVADVRHAFTKNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGA
                     EDVVTNDDGSIEVITAPNDWAGVKSALEAAGYKSVDGDVTMRAQNETELSGDDAVKMQ
                     KLIDALEDLDDVQDVYTSAVLNLD"
     gene            complement(15762..16250)
                     /locus_tag="ACFM6C_000599"
     CDS             complement(15762..16250)
                     /locus_tag="ACFM6C_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HFC6158097.1"
                     /translation="MTPLFRKAVWLLFAVSVCAFAGSLAAQYVLGMEPCVLCISQRLC
                     VLATALCTAIVLMCRPRGRAGGLFGAVFISIPAVTGISVAAYQLWLQSLPPGTAPSCG
                     APWTFRLKGWPLFDWFEPVVRGFGNCAEPDYLLGVALPVWSAAYFLAVVLTVWWAWAR
                     AK"
     gene            complement(17008..17472)
                     /locus_tag="ACFM6C_000600"
     CDS             complement(17008..17472)
                     /locus_tag="ACFM6C_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HFC6158098.1"
                     /translation="MKELDKIDFRILKILQQNARIPMTELAEKVGLSTTPVTERVRRL
                     EREHYISGYHAHLNPHLLGKPLLVFVELKLQSKSGNIFEDFKKEVLKIPQIMECHLVS
                     GEYDYLIKVRLPDMSAYRDMLGNILLQLPAASESRSYVVMEEVKENPVLDLD"
     gene            17694..18752
                     /gene="alr"
                     /locus_tag="ACFM6C_000601"
     CDS             17694..18752
                     /gene="alr"
                     /locus_tag="ACFM6C_000601"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008784 - alanine racemase activity
                     [Evidence IEA];
                     GO_process: GO:0006522 - alanine metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HFC6158099.1"
                     /translation="MRPLNVQIRLGNLRHNYRILKEMHGGKLLAVVKADAYGHGAVRC
                     AFALADLADGFAVATIDEGIRLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQ
                     WQLEALLIRHWKKPVKVWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFS
                     CADEPESGMTEIQMEAFDLGTEGLEGEESLANSAAILNVPEARRDWGRAGLALYGISP
                     FGGGDDRLKPVMRLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRR
                     APSNSPVAVDGKLTRVIGRVSMDMMTIELDASQEGLGHEVELWGDTVNINTVAEAAGT
                     IPYELMCNIKRAKFTYIE"
BASE COUNT         5108 a         5299 c         4853 g         4035 t
ORIGIN      
        1 ggtgctaaga aaccaaggca actggcaaga actgaagacg gaaaatcagg aaaacggcag
       61 cttccacgcc tcttcttctc tcggcttatc cgccatttac gatttcaaac tcaacgataa
      121 attcgataaa ttcaaaccct atatcggcgc gcgcgtcgcc tacggacacg ttaaacatca
      181 ggttcattcg gtgagaaaag aaaccacgac tgttttcagt aaaccaagtg gtagcgttac
      241 aaagccaggc gagatcgtac aaggtccgac cagcaaacct ccctatcacg aaagcaacag
      301 catcagcagc ttgggtcttg gcgttatcgc cggtgtcggt ttcgacatca cgcccaagct
      361 gactttagac accggatacc gctaccacaa ctggggacgc ttggaaaaca cccgcttcaa
      421 aacccacgaa gtctcattgg gcgtgcgcta ccgcttctga ttccccgaca ccgatgccgt
      481 ctgaaccttc agacggcatg agacctttgc ctgcgcactt ggtgcgctgg tcgcctccga
      541 acatggcgcg acacccgaca tttccgccga acgcatcggg cgtttcatga acccggttta
      601 aaacgcatgg aaaaatgccg tctgaaagcc tttcagacgg cattgtgctt gagattccgt
      661 ttaccaatgg ctgacaaacg cttccaaatc ggtattcttg ggcttatgca cttcctctgt
      721 cggcgtgccg accatcatca gcccgatgat tttatcctta tccgcacatc cgaaagcctc
      781 acgcaacaag gggctgttga cccacatccc cgttatccag acattgtcga aaccttgcgc
      841 cgttgccgcc agttgcagcg catacgccgc acaacccgcc gtcagcatct gctcccattc
      901 cggtttcggc ttaggcacat cgcggttcgg cgcaaaggtt accccgataa ccatcggcgc
      961 catattgccc actttttccg cctttttcat cgcatcgtcg ccgaaattca attcggcaac
     1021 cgtttgcttt aacacatcgc gaaaacgttg caatcctacc tcgccttgaa tcacggtaaa
     1081 acggaagggg cacatattgc cgtgatcggg aacttgggtt gccgcctgaa atatttgttc
     1141 caactccgcc gcatcggggg cggggggctt cagctttttg gaagatcggc ggttcgtcaa
     1201 taattttaaa gcatccatat cgttatactc cggtcatcgg tcgggtgttc ggacacatat
     1261 gccgtccgaa ggcttcagac ggcatatccg gcatcagcgc ggacggcggc aggctgccaa
     1321 tatatccatt tccttccgat aggtttggct attggaaata tccatcagcc ccaataccgt
     1381 gctgaaatag tggtcgtgcg aatattcgtt ttccgccgct ttttgtttga ggcattggaa
     1441 atctatgccc ccgtgttggc ggaaggcttt ggaaaaccac ataaccatcg ggatatgcgt
     1501 ctgcccggaa ggcgcgatgg cgtaaggcgc ggcgtgcagg tacatcccgt tttcgcccaa
     1561 actttcgccg tggtcggaaa cataatgcac cacgctttcc aaatcgtcgc ggttttcaag
     1621 tttgcggata accttgtcga taaactggtc cacatacaaa accgtattgt cgtaagtgtt
     1681 gaccagcgtg gcgcgggtgc atttgttgat ttcgttggtg tcgcaggtcg gcgtgaattt
     1741 gcgttcggct tcggtatagc gttcgtaata cgtcggcccg tggctgccga tggtatgcag
     1801 gattaaaacc gcgtctttat cgtttttgtt gaggacttcg tcgaacttag tcagcaggat
     1861 attgtcgagg cactcgccgt tgcggcagta ttcgggcagg ttgagcgagg taacgtcggt
     1921 attcggcact ttgccgcaca cgcccttgca gccggaatcg ttttccaacc aagtaacttc
     1981 cacgccggcg cgctgcacga tgtccagcag gttgtcttgg tgttcggctt tgatttcgtc
     2041 ataatccgtg cggtcgaagg ttgagaacat acacggcagg gagtgcgcgg tcgatgtgcc
     2101 gcagcttctg acctgcggga aattgacaat ttcatcgccg cgcgcggcaa gcagcggcgt
     2161 agtttggcgg ctgtaaccgt tcaaacccca gttggcggca cgcgtggtct cgcccacgac
     2221 cagcaccacg aaacggcgca ggctgccggc cggccggttt tgcacgaccg ccatatccaa
     2281 ttgcgtataa ggaatattgg aacgcttcca atctttgtat ttcgacacgc ccgcgccgat
     2341 gaaattagac ggcacaatca gatgggttac tgatttattg ttgcggaaaa acgaggcgta
     2401 atcctgatat tgcaacattg cgatgcccaa cgcgcacaaa aaggaaacgg cggcaagcac
     2461 aaggcgtgtc aaaagctcct tataccaaac gcggtattta accttgacgg cgatatacgc
     2521 cagcgcgggc aatacgccca aacatacaat ccacagcaca tagcccggcg taatcaggcg
     2581 cgcgctttcg gcagccgtag tttgcaagac attattcaac atcgacttgt tgaaatagat
     2641 attgaaaaat atttcttggt aagacaccgc cgcactgata accaatatca acggaatcaa
     2701 taccttatgc acgaaaggca gggcaatgac gtgaaaaacg aaattactta aaaaaaacag
     2761 caccaccggc atcgtataga ggaagatatc cgccccggtg ccgttaaaag gatgaagctc
     2821 gacaactttg gcaaaaaagg cgtaattcaa taccagcgag gaatacaggg aaaggaaggc
     2881 aatcagcgcg gaagagccga gcttcggcct caggttcggt tttatcattt ggaatgtgtc
     2941 ggataagggt tggaaaaggc atccggcatt tggaatccgg attattgaaa aagattctta
     3001 attataaggc aacggagcaa agcagggcaa gaaaacggaa ggcgacgcag gctgtcggat
     3061 acacatctcg gcacaaacag catcacgccc ggattgaaaa ggacggatag ccgccggcag
     3121 cacagtttta ccccgcatcc caaaacgccg ccggagaacg ccgaaacagc cgatgccgtc
     3181 tgaagccgct tcagacaaca tcgggacatc aaccgtaacg ccgttggaaa tcgcgcataa
     3241 aatctgccaa agcccgcacg ccttcgagcg gcatcgcatt ataaatgctg gcacgcatcc
     3301 cgccgacaga cttatagccc ttcaacaggc acaagccctg caattcggct tccagcacaa
     3361 aacggcggtc aagctcctca tccctcgttt ggaacacgac attcatttta gaacgcgcat
     3421 tcggacggat acggttgata tagaaaccgc cgctgccgtc tatcgtctca tacaaggttt
     3481 gcgccttcag cctattgacc gcttcaattt ttttcacacc gccctgcgcc tgcagccagc
     3541 ggaacaccag ccccgacata taaatcgcgt aagttgacgg cgtgttgtac ataccgtcgc
     3601 ggttcaaatg cgaacggtag ttgaacacat cgggaatatc gttcggacaa cgctcgagca
     3661 aatcctcacg cacaatcacc accgtaaccc ctgccggccc gatgtttttt tgcgcgcctg
     3721 cgtaaatcaa gccgtaatcg gcaacatcaa actcgcgcga caaaatctcg ctggacatat
     3781 cgcacaccag cggcggcatg ccttctgaaa ggcgcggcac ttcacggtat tgcagcccgt
     3841 tgaccgtttc attgacggca aaatggacaa acgccgaatc gggtgcaaca tcccacgttt
     3901 ccacaggcgg caggtcgaga tagtcgaact gctcgccgcc atgcgccgcc aaacggattt
     3961 ccgtatcggt caaacggctc atctgttcat aagcgatacg gctccagttg cccgttacca
     4021 ccgcgtcggc agtgcggaaa ccgtgtgcca gattcatggc tgccatatta aattgggttg
     4081 ttgctccgcc ctgcagaaac aatatcttat agttgtcagg cactttcaaa agctgcctca
     4141 aatcctgttc cgcatgatgc aggatgctca aaaacatttc cgaacggtgg ctcatcgcca
     4201 tcacgggaaa acccgtaccg ttgtagtcca acatttcctg ccgcgccgtt tccaacacgg
     4261 cttcgggcaa tacggcaggg ccggcggaaa aattgtaaat cggataaaga gacatgatgc
     4321 agccttgatt ctgaacaata acccgcccga ttttaggctg gcagcaggct ttgtgcaagg
     4381 atgggaaata cctgtcctcc gcccgactcc atgccgcccg aacacggaaa acaacatcaa
     4441 tatattgatt tacaaatata aaaatcatgc tagcgacaaa tagatacatt tgttttgtca
     4501 acaatattca cgatttccca ttacaaacct cccttacacc cgcttttttc cgtcccaaaa
     4561 acacaaaata aatcaacact ttcatttctc cgcaaaagcg gttataatca cgccgatttt
     4621 tcaactttga cgaaaaatgg ccacggggcc atttttttat tatgtacata gggagcagca
     4681 tggatatcca aaccatcctc gaaaaaaccc tgcccggcct gggctacgaa ctggtcgatt
     4741 tcgaactgac cgcgcaagga acattgcgcg tgttcatcga caaagaaagc ggcattaccg
     4801 tcgaagactg cgcaaccgtc agcaaccact tgagccgcgt cttcatggtt gaagacatcg
     4861 actacaaaaa cctggaaatt tccagccccg gactcgaccg ccccttgaaa aaagccgccg
     4921 acttcgtgcg ctttgccggt cagaatgcca aaatcaaaac ccgcctgccg atagacggtc
     4981 agaaaaactt tatcggtaaa atcgaaggct gcgaaaacga taccgttacc gtatccttcg
     5041 acggcaaaac cgtacaaatc gaattgggca acatcgacaa agcccgtctg cgccccgaat
     5101 tcaaattcta aaacacaaca atattggaga tgttcaaaat gagtcgtgaa atgttacagc
     5161 tggcagaagc actggcaagc gaaaaaaacg ttgatgcgga agtcgtcttc caagcactgg
     5221 aattcgccct gtctaccgcc gccaagaaaa aggcagaccg cgaacacatg gacgtgcgcg
     5281 tccaaatcaa ccgcgacacc ggcgaatacc aaaccttccg ccgctggctg attgtcgccg
     5341 atgaagacta tacctatccc gatgtcgaaa aaaccatcga ggaaatccaa gaggaaattc
     5401 ccggcactac catccaaatc ggcgaatact acgaagagca gctgcccaac gaaggcttcg
     5461 gccgccaagc cgcgcaaacc gccaaacaaa tcatcctgca acgcatccgc gatgccgagc
     5521 gcgagcagaa tctgaacgag tttctcgccg tcaaagaaga catcgtgtcc ggcacggtca
     5581 aacgcgtcga acgccacggc atcatcgtcg aagtcgttgc cggcaaactg gacgcgctga
     5641 ttccgcgcga ccaaatgatt ccgcgcgaaa acttccgcag cggcgaccgc atccgcgccc
     5701 tcttcctgcg cgtcgaagaa atcggcaaca ccggccgcaa acaagtcatc ctgagccgta
     5761 cttccggcga tttcctcgtc aaactgtacg ccaatgaagt acctgaaatt gcagacggca
     5821 tgcttgaaat ccgcgctgtc gcccgcgacc cgggacaacg tgccaaagtc gccgtcaaag
     5881 ccaacgacca gcgcatcgat ccgcaaggca cctgtatcgg cgttcgcggt tcgcgtgtca
     5941 atgccgtcag caacgaattg tccggcgagc gcatcgacgt tgtcctttgg tcgcccgagc
     6001 ctgcccaatt cgtcatgagc gcgctctcac ccgccgaagt cagccgcatc gtgatcgacg
     6061 aagacaaaca cgccgtcgat gtcatcgttg ccgaagacca gctcgcgctc gccatcgggc
     6121 gcggcggtca aaatgtgcgc ctcgcctccg atttgaccgg ctggcagctc aacatcatga
     6181 cttccgccga ggcagacgaa cgcaatgcgg cagaagatgc cgccatccgc cgcctgttta
     6241 tgaatcactt gaacgtagac gaagaaactg ccgacgtact ggttcaggaa ggttttgcaa
     6301 ccttggaaga agtcgcctat gttcctgccg ccgaactgct tgccattgaa ggatttgacg
     6361 aagaaatcgt cgatatgctc cgcaaccgcg cccgcgatgc catcctgacc atggcgattg
     6421 ccgccgaaga aaaactgggc gaagtatccg acgatatgcg caacctcgaa ggcatagatg
     6481 ccgatatgct ccgcagcctt gccgaagcag gcattaccac ccgcgacgac ttggcagagc
     6541 ttgctgtgga cgaactgatt gaaatcaccg gtgtaaacga agaaaccgca aaagccgtca
     6601 tcctgaccgc acgcgaacac tggtttaccg aagacaaata aagggggtac agatgagtaa
     6661 cacaaccgta gaacaatttg ccgccgagct gaaacgcccc gtcgaagacc tgttgaaaca
     6721 gttgaaagaa gccggcgtca gcaaaaacag cggcagcgat tccctgacgc tggacgacaa
     6781 acagcttctg aacgcctacc tgaccaagaa aaacggcagc aacagcagca ccatcagcat
     6841 ccgccgcacc aaaaccgaag tcagcaccgt tgacggcgta aaagtcgaaa cacgcaaacg
     6901 cggacgcact gtcaacattc cttctgccga agaattggca gcacaggtaa aagccgccca
     6961 aacccaagcc gcacctgtcc ggccggagca gacggcagaa gacgcggcaa aagcccgagc
     7021 cgaagctgcc gcacgtgcag aagcccgtgc caaggcagaa gcggaagcgg caaaactgaa
     7081 agcggcaaaa gcaggcaaca aagccaaacc tgccgcgcag aaacccaccg aagcaaaagc
     7141 cgaaaccgca cccattgcgg cggaaaccaa acccgccgaa gaaagcaaag cggaaaaagc
     7201 ccaagccgac aaaatgccgt ctaaaaaacc cgccaagccc aaagaaaaag ccgccaagcc
     7261 gaaacacgag cgaaacggca aaggcaaaga tgccaaaaaa ccggcgaaac ctgccgcacc
     7321 tgccgtgccg caacccgtgg tcagcgcgga agaacaggca caacgcgatg aagaagcacg
     7381 ccgtgccgcc gcacttcgcg cccaccagga agccctgttg aaagagaaac aggaacgcca
     7441 ggcacgccgc gaagccatga aacaacaggc agaacaacag gcaaaagccg cacaggaagc
     7501 caaaaccggc agacagcgtc ccgccaaatc tgccgagaaa ccgcaggcag ccgcgccggc
     7561 cgtcgaaaac aagcctgtca atccggcaaa agcgaaaaaa gaagaccgcc gcaaccgcga
     7621 tgacgaaggt caaggccgca acgccaaagg caaaggcgga aaaggcggac gcgaccgcaa
     7681 caatgcacgc aatggcgacg acgagcgcgt acgcggcggc aaaaaaggca aaaaactcaa
     7741 actcgagccg aaccaacacg ccttccaagc accgaccgaa cccgtcgttc atgaagtttt
     7801 ggttcccgaa accattaccg ttgccgattt ggcgcacaaa atggcggtca aaggcgtgga
     7861 agtggtcaaa gccctgatga agatgggcat gatggttacc atcaaccaat ccatcgacca
     7921 agacaccgcc ctgattgtcg tcgaagaact cggacacatc ggcaaacccg ccgcagcgga
     7981 cgaccccgaa gccttcttgg acgaaggtgc ggaagcagtg gaagccgaag cattgccgcg
     8041 tccgcccgtt gttaccgtga tgggtcacgt cgaccacggc aaaacctcgc tgctggacta
     8101 catccgccgt accaaagtgg tacagggcga agcgggcggc attacgcagc acatcggcgc
     8161 gtaccacgtt gaaacccctc gcggcgtgat taccttcttg gacactccgg gccacgaagc
     8221 ctttaccgct atgcgcgcac gcggtgcgaa agcaaccgac atcgtgattc ttgtggtcgc
     8281 cgccgacgac ggtgtgatgc cgcaaaccat cgaagcgatt gcccacgcca aagcggcagg
     8341 cgttccgatg gtggttgccg tcaacaaaat cgataaagaa gccgccaacc cagagcgtat
     8401 ccgccaagag ctgacccagc acgaagtcat ccccgacgat tggggcggca cggttcaatt
     8461 catcgacgtt tctgcgaaaa aaggaacgaa catcgacgcg ctgctcgaag ccgtattgct
     8521 cgaagccgaa gtattggaac tgaccgcacc tgtcgatgcg cccgccaaag gcatcatcgt
     8581 tgaggcgcgc ttagacaaag ggcgcggcgc ggttgccaca ttgctggttc aaagcggtac
     8641 gctgaaaaaa ggcgatatgc tgctggccgg tacggcattc ggcaaaatcc gcgcgatggt
     8701 cgatgaaaac ggcaaatcca ttaccgaagc cggcccgtcc atcccggtcg aaatcctcgg
     8761 cttgtccgac gttccgaacg cgggcgaaga cgcgatggta ttggcggacg agaaaaaagc
     8821 gcgcgaaatc gccctcttcc gccaaggcaa ataccgcgac gtgcgccttg ccaaacagca
     8881 ggcggcgaag ctggaaaata tgttcaacaa tatgggcgaa acccaagccc aatctttgtc
     8941 ggtcatcatc aaggcagacg ttcagggctc ttacgaggct ttggcgggca gcctgaaaaa
     9001 actgtccaca gacgaagtga aagtgaacgt gttgcacagc ggcgtgggcg gcattaccga
     9061 atcggatgtc aaccttgcca tcgcttcggg cgcgttcatt atcggcttta acgtgcgtgc
     9121 agatgcctct tcgcgcaaac ttgccgaaaa tgaaaacgtg gaaatccgct actacaacat
     9181 catctatgat gccatcgacg acgtgaaggc ggcgatgagc ggcatgcttt ctccggaaga
     9241 gaaagaacag gttaccggta cggtcgaaat ccgtcaggtc atctccgttt ccaaagtcgg
     9301 caacattgca ggctgtatgg ttaccgacgg cgtggtcaaa cgcgattccc atgtccgcct
     9361 catccgcaac aacgtagtca tccacacggg cgagctgtcg tctttgaaac gctacaaaga
     9421 cgacgtaaaa gaagtccgca tgggcttcga gtgcggtctg atgctcaaag gctacaacga
     9481 aatcatggaa ggcgaccaac tggaatgctt cgacatcgtc gaagttgccc gcagcctgta
     9541 attcctttgc aaataaaatg ccgtctgaag cgttcagacg gcaacgaaac gggttctgta
     9601 tgttgcagaa cccgtttttt gtcgcaaatc ggcttcagac ggcattattt tcccgacagg
     9661 cggatttgaa gtttctccac atatccggcg cgttcggcgc ggctggtttc cgggcggtgc
     9721 gtattgagcg acgaccattt ccaatgactg cgggctttgt tgagttctgg cgggagtctg
     9781 gcggcgtccc aaggggcttt gcggctgtgc agctcgatat ccgactgtgc cgcgtgtccg
     9841 cgcgtttgca ggacgtggag caaaccgagg gcgcgggcgg cgagcagggt cagggtttca
     9901 gggtcggtgt gcagggtttg acggccggtg agtttgtcag aaatggtgcg ggtattgggc
     9961 aggatgccgc ccaaaaagcc gccgattgcc gtacccaatc cgagcgagcc gccgaatgta
    10021 gcgatgtcca gccccaagcc gatgagcgcg ccggttgccg cgcccgtgcc gatgcggatg
    10081 ccgtattgtt tgagcaattc gctgtcgaac gggtcttggc ggaaggcttg cggcatccag
    10141 tcgccgccgt cgatttcgct gtggtagaaa cggtagaggg caaacagccg ctgctgcatc
    10201 tgccgttcga gttggcgtat ttccgcctgc atggtttgca gcacggtggc ggtatcctcg
    10261 ttttcgtcca cttcctgcct gaaggcggcg gcatcgagca ggaaatcggc gatttcgcgg
    10321 cgcgcttcgc cgtccagccg ctgccattcg cgccggcgca tggctgtcag gcggtcaagt
    10381 gtgctgcgtt cgggcaacat ggtggcgagg ttttcccaca ggcgtagttc gccttcaaaa
    10441 tcaaaggcga cggtgtcgaa ccctgcgaaa acgtgcaggt ttctcctcgc cagcatggtt
    10501 gtccacgatt cgggaggctg tccgccggta aagttgaaca cgggcataac cggtttggcg
    10561 caccatgaaa ggataatcaa ttcatcccga tatttgtcga gaaccggctc gcgcgcgtcg
    10621 atgacgtaca ttgccatatc gctttgcaag acttgccgta agactttggc ttcctgattg
    10681 aaatcatggt gcgcgccgtg gctgccgaga aactgttgca gccgttcgat gccgtctgaa
    10741 cgattgtccg tatggttttc cagccattcc agcacgccgc ccgcgtcttc gagtccgggc
    10801 gtgtcataca ggaaaaccag catgtccgcg ccgtcgctga tggcggcttc ttcgacatgg
    10861 cgcgtggtcg atggggcgtt tctgacttcg ccgaaaccgc tgtcgcgcaa aagggtacga
    10921 aggagcgagg ttttgccggt attggtatgc ccgacgacgg cgagggaaag gggttgtttg
    10981 ttcatgatgt ttttgaagaa tggattttca gacgaccttt taaggatggc ggctttatgg
    11041 ggcgtttcaa gtgcggtcgt tggttttcag acggacttcc tgcgccaccc tgtcaggctc
    11101 aagccacgcc gcgccgcatt cggtcagcgc gttacgccaa tgttccagct tttccgcaag
    11161 gtcgtctgaa agcccctgtt ccgccaaaag ctgcaccacc gcgccgccct gcgccgcttc
    11221 cgagagccgg acaatctgcc gcaacacgcc ccggtccggc acagtttggg cgcgtacgcc
    11281 gataagcagt tgcgccggtt tctgcttcag ctctgtctcc agcgcggcaa cctgttcccg
    11341 attggcggca acgcccttat ccagccattc ctgcgccagc ctgccttcaa accacgtccc
    11401 ttcgtgccac ccggtttcca gcatcaccgc ccacttgggc gcgtcgttta agatgatttt
    11461 cggagaaacg gcagacacgg tttcctgatg cgtatccgca tcggtgattt tgttctgcca
    11521 acggcggatg accgcctgat aataaggttt ctctaaatcc agcttacttt ggcttgtttt
    11581 caaaaagatt ttacacacta cccaagccag caggcgcggc aggatgccgt agcaggcgat
    11641 actgccgacc agcagccccg accaagcccg cgcatcggca atattgccgt tcagacggcc
    11701 ttcgatgacc gcccgcgcat caggcacggg aaaacccagt ttcgcaggca gccatgccaa
    11761 catttccacc gcgcgtaccg aagcggcatt gctcaacagc gtgctttccc agttgaacgt
    11821 atattgccgc accaaaagca gcagcaatac cgacaccagc attccgagca gcgtgcagag
    11881 ccacaggctg tgcgacgttg cgcctatttt ccaacgtacc gaaggttgcc gccactcgtc
    11941 cgcatacagc cgcaacaccg cctgattgac agggtctttg ccccgaaacc acgtcgccgg
    12001 actgctgaaa aaacgcccca ctttcacgcg caggaacaac gttgccaacc atactgctaa
    12061 catcagcgta ttcatgccca acacgcccgc caaaatcagg aagaaattca gcccctgatt
    12121 gtccatcaga agataagtgc ctgaaaatcc ggcggtaaac atcatcgatg ctgccaccac
    12181 ccacaaccag aacgacccca cacgcacacg ttccaacgtg tcccgcagca tacggttcct
    12241 gtcgatcatc tccgcccgac ggatgatttt ttcctccgta ctgccgtcca cgcggcgcaa
    12301 agcctccgtc gcctgcacgg gatcgccgct gaaaatatag ccgccctctt ccaaaatgcg
    12361 aaccaattca accagttttt gggaaggatt caacataaaa tgccatctga aaataaaaaa
    12421 acagatttta acacacgcat tttcaagaat attcacagtg taggcaaaga gtaaatccca
    12481 cacagaggca aaagtatcgg cgtaaactga ctgcctctac tttcccgaaa gattgtgcga
    12541 tgtatacagg cgaacgcttc aatacttaca gccatttgag cggtttgatt ctggcggcgg
    12601 caggtttggc gctgatgctg ctgaaaacca taggacacgg ggacggctac cgtatcttca
    12661 gcgtatcgat ttacggcatc agccttcttc tgctctattt gagttcctcg ctgtaccacg
    12721 gaattgcagc cggaaaactg aaaagcattt tgaaaaaaac cgaccactgc atgatttatg
    12781 tgctgattgc cggaagctac acaccgtttg cactggtttc tttgagaaac gggccgggct
    12841 ggacggtatt ttcactgtcc tggctgctgg cggctgcagg aatcgcacaa gaactcacca
    12901 tcggacggaa aagcgaaaaa cgactgctgt ctattgcgat ttatgtcgtc atgggttgga
    12961 tggtcttggc ggtaatgaaa tccctgacag cctcactccc gctggcagga ctggcttggc
    13021 tggcggcagg cggtatgctg tacagcgtcg gcatttactg gtttgtaaac gatgaaaaaa
    13081 tccgacacgg gcacggaatc tggcatctgt tcgtattggg cggcagcatc acccaatttg
    13141 tcagtgtgta cggttatgta atctgaatgc cgtctgaaaa gcaaaacctc ccgatcctga
    13201 agattgggag gttttctgtt tgccggacat cagcccttgt cgtggaactc gtgaaattca
    13261 tactgatagg acaaatcccg acccgctttt ttctgtgcca aataatcatc ataaatggca
    13321 cggatttcct tacgcaacaa aaacagggct atcaagttcg ggataaccat aaagccgttg
    13381 aacatatcgg acaggctcca aaccaaatcg actttgccga gcgtacccaa aacgatggca
    13441 agcagaacca atgcgcgata gatgcccaag tgtcttcccc tgaaaagaaa acggatgttg
    13501 gactcaccga aataatacca gccgataatg gtcgtcaagg cgaaaaaggt cagacacacg
    13561 gcaagcaatt gcgaaccgaa gcccggaaat gccttgttaa aggcaaactg ggtaaccgcc
    13621 gcgccctgtt cgcccgaaag gttggcatca gtcagcagga taatcaatgc cgtagccgta
    13681 cataccaaaa tcgtatcgat aaacacaccg acaaatgccg ccataccttg ctgcacagga
    13741 tgcttcacat cagcggttgc atgtgcatgc ggggtagaac ccatacctgc ttcgttggaa
    13801 aacagaccgc gcgccacgcc gaaacgtatc gcttcacgca taccgatacc cgcagcaccg
    13861 cccaaaacgg cttcaggatt gaaggcggcg gtaaagatgt ggttgaacat cggcacaata
    13921 tagtcggaaa attcaaacag gataacgacg gcgcacaaaa tataaacaac cgccataaac
    13981 ggcacgacaa actgggcaat attggcaata cggttcacgc cgccaatcac aaccatgccc
    14041 gcaaggacgg caagcacaat accgactgcc aaagaaggca catcaaatgc aatggtaacg
    14101 gcagaagcaa tggagtttgc ctgtgtcgca ttaccgataa agcccaatgc gataatcaac
    14161 gcaatggaga aaaagcccga caggaaacgc gccgcgcccc tgccgatttt cggagtcaga
    14221 ccgtgcgtaa tataaaacgc cggcccaccg atgtatttgc cgtggctgac gacgcggtat
    14281 ttctgcgcca gcagtgcctc cgcaaaaatc gtggacatcc ccaaaacggc agaaacccac
    14341 atccaaaaaa tcgcgcccgg cccgcctgcg gtgatggcgg tcgccacgcc ggcgacgttg
    14401 cccgtaccga tttgcgcaga tatggcaacc gccaacgcct gaaactgcga taaagacttg
    14461 tcgtctttat cgcctttggc aaacaagccg ccgaatacgg atttgaatcc cgcgcccagc
    14521 ttggtaatct gcggcgcacc gagatacagc gtaaaaaaca ggccgatacc caaaagcgcg
    14581 taaatcagca ggtagtccca aaggaaccga ttgactgtac ccaccagaac agacaatata
    14641 ttttccataa aataaacctt atcttacaat taaaatgact gccttccaaa agacattcca
    14701 ataaggaaac acggcgagca gaccgtattt gccgcaacag atgccttaaa ttgtcaacaa
    14761 tcggggagaa gctgcgccat cataccgtaa aatatcgtta attaaaacat ttctttattt
    14821 ttaagcggaa agcggaggaa atcgctttca gacggcatcg acaacggcac ggcataaaac
    14881 aggatatttt gggtacttgc aacttatgtt aaaatgccga ccgtaaaaaa tctgacaaaa
    14941 acagattaat tatttgaaat aagaaaggaa atttatggca ggccatagca agtgggcgaa
    15001 tatccagcat aaaaaagccc gtcaggatgc caaacgcggc aaaatcttca cccgtttaat
    15061 caaagaaatc accgttgcgg cgcgtatggg cggcggcgac cccggttcaa atccgcgcct
    15121 gcgcctggct ttggaaaaag cagccgaaaa caatatgccc aaagacaatg tgcaacgcgc
    15181 catcgacaaa ggtacgggca acttggaagg cgtggaatac atcgagttgc gctacgaagg
    15241 ctacggcatc ggcggcgcgg ctttgatggt ggactgcctg accgacaaca aaacccgcac
    15301 cgttgcggac gtacgccacg cgtttaccaa aaacggcggc aacttgggta ccgacggctg
    15361 cgtggcgttc aacttcgttc atcaaggcta tttggtgttt gaaccgggcg ttgacgaaga
    15421 cgcgctgatg gaagcggctt tggaagccgg tgcggaagac gtggttacca acgacgacgg
    15481 ttccatcgaa gtcattaccg cgccaaacga ttgggcgggc gtaaaatccg ctttggaggc
    15541 ggcaggttac aaatccgttg acggcgacgt tacgatgcgc gcccaaaacg aaaccgaact
    15601 ctccggcgac gatgccgtca aaatgcaaaa actgattgac gcgctggaag atttggacga
    15661 cgtgcaagac gtttacactt ccgccgtatt gaatctggac tgatacgcag cacagcagac
    15721 atacaataaa atgccgtctg aacctttcag acggcattga tttatttagc ccttgcccac
    15781 gcccaccaaa ccgtcaggac aaccgccaga aaatacgccg cgctccaaac aggcaaagca
    15841 acccctaaca gataatccgg ttcggcacaa tttccgaacc cgcgcacgac aggctcgaac
    15901 caatcaaaca aaggccagcc cttcaatcga aacgtccacg gcgcgccgca cgaaggagcc
    15961 gtacccggcg gcagcgactg cagccacaac tgatatgccg caacagaaat acccgtaacg
    16021 gccggaatac tgataaagac agcaccgaac aaaccgcctg cccttcctct tggtctgcac
    16081 atcaggacaa ttgccgtaca caatgcggtt gccaaaacgc ataaccgctg actgatacac
    16141 aaaacgcaag gctccatacc caaaacatac tgtgccgcca aagaaccggc aaatgcacag
    16201 accgaaacgg caaacagcag ccaaacggct tttctaaata acggggtcat tttctcaaca
    16261 caccaatcaa aataccgata tgccgatttt gctggatata tcccgagatg gcaagggacg
    16321 aatcgacacc ggcgcaggtg cggacgattt cggttttccc gatatacaca agacctgaca
    16381 agggacaaaa cggcgatttg cccgcacaat gcccgcaaaa aaatacatcc ggaggatttg
    16441 aatttcggca aatttagcga atcaaaagtt tatttcaatg aaatcatatg atttttttga
    16501 ataagcggat tgacaggttt ttgaaggaat ttgttaccgg atagccatcg ggcaagtttt
    16561 ttgcaaaatt tgaatcggtc gggtaaattt tcaaaaaata attgacagcg gataagaaac
    16621 ggcggataat ttccgccgtc gagttgcttg atgcagcttg atttttctcc tctatttctc
    16681 ctttgtagac ttggcacaca ttcaactgga tgtgtgcatt tttttatctc cgcttttttt
    16741 gaaatttaat tacttttatt gtttgaaatt ccattcttta agaaatttaa caagaaaaac
    16801 gcttgctttt tgaccggaaa agctgcataa ttcattccgt tagctggttc gagtagtcag
    16861 ttaatagttt ctcctctatt tctcctttgt agacttggca cacattcaac cggatgtgtg
    16921 cattttttta tctgaagcaa caagcctctg tgcgtgatgt tgttatgttt catttaggtg
    16981 tcaaaccgca tagccagcct gaaatattca atccaaatcc aaaaccggat tttctttgac
    17041 ctcctccatc acaacataac tcctactctc cgaagcggca ggcagttgca ataggatatt
    17101 gcctagcata tcccgatagg cagacatatc gggcaaacgt actttaatca gatagtcgta
    17161 ttcgcccgac accaagtggc attccataat ttgcggaatt ttcagcactt cttttttgaa
    17221 atcttcgaaa atattgcccg atttggattg cagcttcagc tcgacaaaaa ccaatagtgg
    17281 tttgcccaac agatggggat tgagatgggc gtgatagccg gaaatataat gttcccgctc
    17341 caaacggcgc accctctctg taacgggcgt ggtggacaag cctaccttct cggcaagctc
    17401 cgtcatcggg atgcgggcat tctgttggag gatcttaaga atgcggaaat cgattttatc
    17461 tagttctttc atttggattg ccttgtattt attattgatt ttaacaaata gagtataaat
    17521 ttgagaaagc gattatatca ggaaaagcaa accgccttcc tacctgaaaa ctgctgcttc
    17581 ggcttgaaga tacaagggtc tttaatattt taaaagcctt gccgttggat tataattccc
    17641 taattgattt cttaattttg ctaataaaca cttgtttggt aaggaatgaa tttatgcggc
    17701 ctttgaacgt gcagattagg ttgggcaacc ttaggcacaa ttatcggatt ttgaaggaaa
    17761 tgcacggagg caaactgttg gcggtagtga aggccgacgc atacggacac ggtgcggtca
    17821 gatgtgcttt cgcgctggca gacttggcag acggctttgc cgtggcgaca atcgatgaag
    17881 gaatcaggct acgggagagc ggcattaccc atccgattgt ccttttggaa ggcgtatttg
    17941 aagcatcaga gtacgaagcg gtcgaacaat actcgctttg gccggcagtc ggaaaccaat
    18001 ggcagcttga ggctttgctg atccgccatt ggaaaaaacc cgtcaaagtc tggttgaaaa
    18061 tggattcggg gatgcaccgt accggttttt tccctcatga ttacgcttcg gcatatgcgg
    18121 cattgaagca gtcggaatat gtggacagta ttgtcaaatt ctcgcatttc tcctgtgcgg
    18181 acgaacccga aagcggtatg acggaaatac agatggaagc attcgatttg ggtacggaag
    18241 ggctggaagg cgaagaaagc cttgccaact ccgccgctat tttgaatgtt cccgaagcac
    18301 gcagggactg ggggcgcgcc ggtctggcgt tatacggcat ttccccgttc ggaggaggcg
    18361 atgacaggct gaagcccgtg atgaggcttt caacccgtat tttcggcgaa cgcgttttac
    18421 agccgcactc ccctatcggt tatggcgcaa cattttatac cagcaaatct acgcgcgtcg
    18481 gcctgattgc ctgcggttat gcggacggtt atccgcgccg cgccccaagc aattcccccg
    18541 tcgctgtcga cggcaaattg acccgggtca tcggcagggt ctctatggat atgatgacca
    18601 tcgagctgga tgcttcgcaa gaaggtttgg gacacgaggt cgaactgtgg ggcgatacgg
    18661 tcaacatcaa taccgttgcc gaagcggccg gaaccatccc ttacgaattg atgtgcaata
    18721 tcaaacgtgc aaaattcact tatatcgagt aatcgagtcc aaacaaaaat gccgtctgaa
    18781 gcctttcaga cggcataaat gcgttttgac aaaatcagta tagtggatta acaaaaatca
    18841 ggacaaggcg acgaagctgc agacagtaca aatcgtacgg caaggcgagg caacgccgta
    18901 ctggtttaaa tttaatccat tataaaagac attgccaaat agaaaatact gataatgccc
    18961 acaatctgaa accccatcct tcccgcaaaa acggaaaatc aaaatcagaa acctaaaatt
    19021 tcgtcattcc cgcgcaggcg ggaatccggt tttttgagtt tccgtcattt ctgataaatt
    19081 ctcgtcgttt ttcatttcta gattcccgcc tgcgcgggaa tgacaaaatt aaagtttcag
    19141 aatttatttg aacaacaaac tagattcccg ctttcgcggg gatgccggcg gataggtttt
    19201 gttgtttcgg ataaattcct gttgtttttt ggtttccaga ttcccacctt taaaagaatg
    19261 acgtaagaaa gcagaaataa ggacacaggg atttt
//
LOCUS       DAXHPV010000024        19284 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.024, whole genome shotgun sequence.
ACCESSION   DAXHPV010000024 DAXHPV010000000
VERSION     DAXHPV010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 19284)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19284)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19284
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.024"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(211..1986)
                     /gene="ptsP"
                     /locus_tag="ACFM6C_000602"
     CDS             complement(211..1986)
                     /gene="ptsP"
                     /locus_tag="ACFM6C_000602"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008965 - phosphoenolpyruvate-protein
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HFC6158100.1"
                     /translation="MSIVLHGVAAGKGIAVGCAHLIARGTEEVPQYDVAEADTDAEAE
                     RFDAAVKATRKELEQLRSAIPENAPTELGAFISLHLMLLTDVTLSREPVDILREQKIN
                     AEWALKQQSDKLAAQFDNMDDAYLRERKQDMLQVVRRIHNNLIGQGNELEVADNLFDE
                     IVLIANDLSPADTVLFKEQRIAAFVTDAGGPTGHTAILGRSLDIPSVVGLHNARKLIT
                     EGETVIVDGINGVLIIAPDESVLNEYRRRAREYRSHKRDLNKLKKTAAATADGVCIEL
                     VGNIESAEDVKPLHNLGADGIGLFRSEFLYLNRDTMPSEDEQYEVYSAIVKKMKGKSV
                     TIRTVDLGVDKNPRWFGKNSTPNGSLNPALGMTGIRLCLAEPVMFRTQMRAILRAAVH
                     GPVRMMWPMITSVSEVRQCLIHLDTAQRQLAERGDAFGKVGIGCMIEIPSAALTVGSI
                     LKLVDFISVGTNDLIQYILSVDRGDDSVSHLYQPGHPAVLKMLQHVIRTANRMDKDVS
                     VCGEMAGDTAFTRVLLGMGLRRFSMNPNNILPVKNIILHSNVGQLESDIVKVIRCEDE
                     EKSEKLIKQINSVSVEEEADFKGRK"
     gene            complement(1986..2255)
                     /locus_tag="ACFM6C_000603"
     CDS             complement(1986..2255)
                     /locus_tag="ACFM6C_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HFC6158101.1"
                     /translation="MLKQSIEIINKLGLHARASSKFTQTASQFQSEVWVTKNDSRVNG
                     KSIMGLMMLAAAKGTVIELETDGADEAEAMRALTDLINGYFGEGE"
     gene            complement(2324..2761)
                     /locus_tag="ACFM6C_000604"
     CDS             complement(2324..2761)
                     /locus_tag="ACFM6C_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HFC6158102.1"
                     /translation="MIGLLIITHETIGEAYRKLAHHFFPGGLPENVRILGVQPTEDQD
                     DIINNAIAALQEFPDNDGVLIMTDIFGATPCNAARRLVRENKSAILTGLNAPMMVKAV
                     QYSPAAEDLAAFTECVREAAVKGIFAITSAPEDLVCRRSGDAV"
     gene            complement(2842..3405)
                     /locus_tag="ACFM6C_000605"
     CDS             complement(2842..3405)
                     /locus_tag="ACFM6C_000605"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine-guanine phosphoribosyltransferase"
                     /protein_id="HFC6158103.1"
                     /translation="MTDLETKRLETQAMLENADLLFDQGQCRAALQKVADEITRDLGG
                     KYPLLLPVMGGAVVFTGQLLPLLRFPLDFDYVHVSRYGDKLEGGAFNWKRMPDAEQIR
                     GRHVVVLDDILDEGHTMSAIQAKLLEMGAASCRAAVFANKLIDKPKPIRADYVGLDVP
                     NRYVFGYGMDAAGCWRNLGEIYALDGK"
     gene            complement(3474..4298)
                     /locus_tag="ACFM6C_000606"
     CDS             complement(3474..4298)
                     /locus_tag="ACFM6C_000606"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HFC6158104.1"
                     /translation="MIKKTIGGIIPIFTAVFIPASAGAADLMLAQEYKDQEIAGWAMS
                     EKLDGVRAYWDGKHLISRQGYAFTPPKGFTAQFPPYPLDGELYSGRGQFEQISATVRS
                     VSSDWRGIRLHVFDVPKAQGNLYQRLAVATQWLKTHPNAPITIIPQIKVRDRQHAMDF
                     LKQIEAQGGEGVMLRQPESRYSGGRSSQLLKLKSQYDDECTVTRHYEGKGRNAGRLGA
                     VGCKNRHGEFRIGSGFKDKDRDNPPKIGTLITYRYRGFTRKGTPKFATFVRVRTDR"
     gene            4389..5021
                     /locus_tag="ACFM6C_000607"
     CDS             4389..5021
                     /locus_tag="ACFM6C_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HFC6158105.1"
                     /translation="MTLRYEILSVTPFRQNCTLIWDDESGEAVLTDVGGDVPFLLQAL
                     ANRKLTLTAIWLTHGHLDHAGGVVEMLKTHKVPVLGPHPDDEFLLQSLPQTTAQYGFP
                     VSPAFAPNRWLEEGETLTVGRYAFQVLHIPGHTPGHIVFYCAEAELLIAGDVLFYETI
                     GRTDFPRGNHADLINNIRNKLFTLPETVQVVAGHGRMTSIGHEKRHNPFF"
     gene            complement(5227..7011)
                     /gene="rmuC"
                     /locus_tag="ACFM6C_000608"
     CDS             complement(5227..7011)
                     /gene="rmuC"
                     /locus_tag="ACFM6C_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HFC6158106.1"
                     /translation="MELMTVLLLLAALLSGVLFTWLLMKSRFQGVLAVLNAQLAEKAA
                     RCDFVEQAHAEIASELAVLDGKYEHLQDENYALGNRFSAAEKQIAHLQEKEAESARLK
                     QSYIELQEKAQGLAVENERLATQLGQERKAFADQYALERQIRQRVETDLEESRQTLRD
                     VQNDLSDVGNRFAAAEKQIAHLQEKEAEAERLRQSHIDLQEKAQGLAVENERLATQIE
                     QERLASEEKLSLLGEARKSLSDQFQNLANTILEEKSRRFTEQNREQLHQVLNPLNERI
                     HGFGELVKQTYDKESRERLTLENELKRLQGLNAQLHSEAKALTNALTGTQNKVQGNWG
                     EMILETVLENSGLQKGREYVVQAASVRKEEDGGTRRLQPDVLVNLPDNKQIVIDSKVS
                     LTAYVRYTQAADADTAARELAAHVASIRAHMKGLSLKDYTDLEGVNTLDFVFMFIPVE
                     PAYLLALQNDAGLFQECFDKRIMLVGPSTLLATLRTVANIWRNEQQNQNALAIADEGG
                     KLYDKFVGFVQTLESVGKGIDQAQNSFQTAFKQLAEGRGNLVGRAEKLRLLGVKANKQ
                     LARDLTERANETTALSESLEYVAEDEAV"
     gene            complement(7350..8138)
                     /locus_tag="ACFM6C_000609"
     CDS             complement(7350..8138)
                     /locus_tag="ACFM6C_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c1"
                     /protein_id="HFC6158107.1"
                     /translation="MKQAMKNWFAALLLAVPMGAAFASGGHAHYEKVDIDLRDQVSLQ
                     RGAQIFTNYCLSCHSASGMRFNRLKDIGLTDEEIKKNLMFTTDNVGDVMHSAMNPKDA
                     AKWFGAAPPDLTLIARSKGADYLYAYMRGFYKDPTRPSGWNNTVFDKVGMPHPLWEQQ
                     GVQAVELDAKGQPVMVKDEHGEMKPKLYWESTGLHSRRLPNGKVIQKEYDAYVRDLVN
                     YLVYMGEPAQLQRKRIGYVVMIFLFAVMLPLAYFLKKEYWKDVH"
     gene            complement(8153..9502)
                     /locus_tag="ACFM6C_000610"
     CDS             complement(8153..9502)
                     /locus_tag="ACFM6C_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HFC6158108.1"
                     /translation="MANQTNSKAKALLGWMDARFPLSKMWNEHLAQYYAPKNFNFWYY
                     FGSLALLVLVIQIVSGIFLTMNYKPDGNLNAYHLPAAFTAVEYIMRDVSGGWIIRYMH
                     STGASFFFIVVYLHMFRGLIYGSYKKPRELVWIFGSLIFLALMAEAFMGYLLPWGQMS
                     FWGAQVIINLFSAIPVIGPDLSTWIRGDFNVSDVTLNRFFALHVIAVPLVLLGLVVAH
                     IIALHEVGSNNPDGVEIKKNKDENGIPRDGIPFHPYYTVKDILGVVVFLIVFCAVLFF
                     APEGGGYFLEAPNFDAANALKTPPHIAPVWYFTPFYAILRAIPSFLGTQVWGVIGMGA
                     AVVLIALLPWLDRGEVKSVRYRGPIFKTALVLFIISFIGLGILGAMVATDTRTLVARI
                     LSFVYFAFFLGMPFYTKLDKNKPVPERVTMSTAKQKIMFFVYVGITAVGAYLFATNI"
     gene            complement(9521..10102)
                     /gene="petA"
                     /locus_tag="ACFM6C_000611"
     CDS             complement(9521..10102)
                     /gene="petA"
                     /locus_tag="ACFM6C_000611"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045275 - respiratory chain complex III
                     [Evidence IEA];
                     GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HFC6158109.1"
                     /translation="MDNQEINNGRRRFLTLATCGAGGVAALGVATPFVASFFPSEKAK
                     AAGAAVEVDVSKIEAGQLLTAEWQGKPIWVLNRTDQQLKDLKGLNGELTDPNSDAEQQ
                     PEYAKNETRSIKPNILVAIGICTHLGCSPTFRPDIAPADLGADWKGGFFCPCHGSKFD
                     LAGRVYKGVPAPTNLVVPPYKYLSDTTILVGED"
     gene            complement(10225..10974)
                     /locus_tag="ACFM6C_000612"
     CDS             complement(10225..10974)
                     /locus_tag="ACFM6C_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051540 - metal cluster binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HFC6158110.1"
                     /translation="MVLRRDFLTWCNETLQTALFKDYAPNGLQVEGREYIGKIVTSVT
                     ASRAAIDFAVEQKADLLLVHHGMFWKNELPTVTGWKKERIAALLRHDINMAGYHLPLD
                     AHPTLGNNAQLADRLGFATEKRFGEQNLLNSGSLKQAKTLGALAAHIETVLQRKPVVI
                     GKPEREIRRVAWCSGGAQGFFQTAIDEGVDLYLTGEISEAQYHLANETGTAFISAGHH
                     ATERYGVRALAESAAEVFGLEVCHFDENNPA"
     gene            11105..12034
                     /locus_tag="ACFM6C_000613"
     CDS             11105..12034
                     /locus_tag="ACFM6C_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HFC6158111.1"
                     /translation="MDSIIELRHLKTLLALEETGSVSLAAKRVFLTQSALSHQIRMLE
                     NHYGAPLFERKSTPLRFTPVGERLLRLAHDLLPQVTDAERDLARIIEGEAGELRIAVE
                     CHTCFDWLMPAMGEFRPIWPQIELDIVSGFQADPIGLLLQHRADLAIVSEAEKQNGIS
                     FQPLFAYEMVGICAKDHPLAAKTVWEAEDFIGETLITYPVPDEMLDLPKKILIPKNIN
                     PPRRHSELTIAIIQLVASRRGIAALPYWTVMPYLEKGYVVHRQITADGLQSKLYAAIR
                     TEDTDKSYLNNFCQIIRERGFADLPGLSELEPV"
     gene            complement(12290..12682)
                     /gene="rpsI"
                     /locus_tag="ACFM6C_000614"
     CDS             complement(12290..12682)
                     /gene="rpsI"
                     /locus_tag="ACFM6C_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019958115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HFC6158112.1"
                     /translation="MNGKYYYGTGRRKSSVARVFLIKGTGQIIVNGRPVDEFFARETS
                     RMVVRQPLVLTENAESFDIKVNVVGGGETGQSGAIRHGITRALIDFDAALKPALSQAG
                     FVTRDAREVERKKPGLRKARRAKQFSKR"
     gene            complement(12692..13123)
                     /gene="rplM"
                     /locus_tag="ACFM6C_000615"
     CDS             complement(12692..13123)
                     /gene="rplM"
                     /locus_tag="ACFM6C_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007343693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HFC6158113.1"
                     /translation="MKTFSAKPHEVKREWFVIDAQDKVLGRVAAEVASRLRGKHKPEY
                     TPHVDTGDYIIVINADKLRVTGAKFEDKKYFRHSGFPGGIYERTFREMQEQFPGRALE
                     QAVKGMLPKGPLGYAMIKKLKVYAGAEHAHAAQQPKVLELK"
     gene            complement(13301..13480)
                     /gene="ssrS"
                     /locus_tag="ACFM6C_000616"
     ncRNA           complement(13301..13480)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="ACFM6C_000616"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(13486..13791)
                     /locus_tag="ACFM6C_000617"
     CDS             complement(13486..13791)
                     /locus_tag="ACFM6C_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HFC6158114.1"
                     /translation="MNIEQVHIEVMHARLTVNTPAEEKDTLLQAVGMLNGKAEAIREG
                     GRVADSEKIVIMAALNVVHDLLKTSLNGGDLAIGDFARKIADMDNACQKALSRLAQE"
     gene            complement(13802..14131)
                     /locus_tag="ACFM6C_000618"
     CDS             complement(13802..14131)
                     /locus_tag="ACFM6C_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158115.1"
                     /translation="MKQNIEKLESSVYTLVQKFETLVSENRRLKETVAELKRAHERQK
                     LEHETAVDELSEALLVQVGKLKEDLQNKIDSLTEENTRYRSLLEQSREKISALAARLP
                     QWQETQQ"
     gene            complement(14186..15175)
                     /locus_tag="ACFM6C_000619"
     CDS             complement(14186..15175)
                     /locus_tag="ACFM6C_000619"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009331 - glycerol-3-phosphate
                     dehydrogenase (FAD) complex [Evidence IEA];
                     GO_function: GO:0047952 - glycerol-3-phosphate
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0046167 - glycerol-3-phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HFC6158116.1"
                     /translation="MKITVIGAGSWGTALALHFSQHGNRVSLWTRNADQVRQMKEERE
                     NKHGLPGFPFPETLEVCADLADALKDSGLVLIVTSVAGLRSSAELLKQYGAGHLPVLA
                     ACKGFEQDTGLLTFQVLKEVLPDNKKIGVLSGPSFAQELAKQLPCAVVLASENQEWIE
                     ELVPQLNTTVMRLYGSTDVIGVAVGGAVKNVMAIATGLSDGLEYGLNARAALVTRGLA
                     EITRLASAMGAQPKTMMGLAGIGDLILTCTGALSRNRRVGLGLAEGKELHQVLVEIGH
                     VSEGVSTIEEVFNTACKYQIDMPITQTLLQLIRKEMTPQQVVERLMERSARFE"
     gene            complement(15298..18000)
                     /gene="ppc"
                     /locus_tag="ACFM6C_000620"
     CDS             complement(15298..18000)
                     /gene="ppc"
                     /locus_tag="ACFM6C_000620"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008964 - phosphoenolpyruvate carboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0015977 - carbon fixation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HFC6158117.1"
                     /translation="MQLHILNNPKDAALAADAEFLKQSLFNLLHEEASPLVVETVKLL
                     STSDDSAALIEKVLPQLDEQQTHDLTLACGLFAQILNIAEDVHHERRRQIHEEAGRGG
                     AEGSLTETVRRLKAGKADGKSVQRQLDNTSVTAVLTAHPTEVQRQTVLSFNRRIRALL
                     PQRERCTNADALARLRREIDTILLGLWQTSETRRHKLSVNDEINNGVSIFPMSFFEAL
                     PKLYRNMEHDFQMVYPDVCVPNILKIGGWIGGDRDGNPFVSAETLRFAFRRHADAVFR
                     FYRGELDKLYRELPLSIRRVKVNDDVMALAALSPDEEIARTEEPYRRAIAYIMARAMG
                     KARALGLGMGCKFGFLEPYASAQEFLDDLKKLQRSLIDNGSRLLAEGRLADLIRSVSV
                     FGFHMMPLDLRQHAGKHADVVAELFQHAGLEDYNSLNEEQKQAALLRELSHQRPLYSP
                     FITYSDHTRHELAIFNEARKIKDEFGEDAVTQSIISNCEQPSDLLALALLLKESGLLA
                     VENGKPRSRINIVPLFETIEALENACPVMETMFRLDWYDALLESCGNIQEIMLGYSDS
                     NKDGGYVTSSWCLYQAELGLVELFKKYDVRMRLFHGRGGSVGRGGGPSYQAILAQPAG
                     SVAGQIRITEQGEVITAKYADPGNAQRNLETLVAATLEASILPDKKDPDAKLMQALSD
                     VSFKYYRELITHPDFIDYFLQTSPIQEIATLNLGSRPASRKTLARIQDLRAIPWVFSW
                     MQNRLMLPAWYGFGSAVETLCEDKPETLAALREHAQSNPFFQAMLSNMEQVMAKTDIT
                     LAENYAGLSESPDKAKIIFGMIKEEYRRSRKALLDLLQTEELLRDNRSLARSLALRIP
                     YLNALNGLQVAMLKRLRKEPDNPHALLMVHLTINGVAQGLRNTG"
     gene            18043..18936
                     /locus_tag="ACFM6C_000621"
     CDS             18043..18936
                     /locus_tag="ACFM6C_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HFC6158118.1"
                     /translation="MPHPCQTVHTLTARVPKCRLKLNAARRQRYNRPQLFFPNIIMTT
                     TEHDNDDELLLRYSRHILLDEIGIEGQQKLSAAHILVVGCGGLGAAALPYLAASGIGT
                     LTIADSDTVELHNLQRQVAFDEGDVGKLKTEALADRLKRINHTVNVRAVNEKLDGCRL
                     TGLVQAADIVLDCCDNYATRQAVNRACVQTKTPLVSGAAVRFEGQLAVYRPDLPDSPC
                     YACLFDGGSASDGICSLFGVFSPLVGIIGSTQAAEALKILLDAGEPSHGRLAVYRALE
                     GGWQYFDLPRNPECPVCGAER"
BASE COUNT         4152 a         5234 c         5103 g         4795 t
ORIGIN      
        1 aagaaaccgt tttacccgac aagtttccgt gccgacagac ctagattccc gcctgcgcgg
       61 gaatgacgga ttttaggttt ctgattttgg ttttctgttt ttgagggaat ggccgatttt
      121 gggtttctgt ttcggttttc tattttgcaa gaatggcaaa atttcagatt gcgggcattg
      181 ttaagtattt ctatttttca cctgccgtat ttatttccgc cctttgaagt cggcttcttc
      241 ctcgacagac acgctgttga tctgtttgat cagcttttcc gacttctctt cgtcttcgca
      301 gcggatgact ttcacaatat cgctttcgag ctgcccgaca ttgctgtgca gaatgatgtt
      361 tttgacgggc aggatgttgt tggggttcat ggaaaaacgg cgcagcccca tacccaataa
      421 aacgcgggta aacgcggtat cgcccgccat ctcgccgcat acggatacgt ctttgtccat
      481 gcggttggcg gtacggatga cgtgttgcag cattttcagc acggcgggat ggccgggctg
      541 gtagaggtgg ctgacgctgt cgtcgccgcg atcgacggac aagatgtatt gaatcaggtc
      601 gttggtaccg acggagatga aatcgaccag tttcaaaata ctgccgacgg tcagcgcggc
      661 agacggaatt tcaatcatac agccgatgcc gactttaccg aaggcatcgc cgcgttcggc
      721 aagctggcgt tgcgcggtgt cgaggtggat gaggcactgg cgcacttcgg atacggaggt
      781 aatcatcggc cacatcatgc ggacgggacc gtgtaccgcc gcacggagga tggcgcgcat
      841 ctgggtgcgg aacatgaccg gttcggcaag gcacaggcgg atgccggtca tgcccagcgc
      901 ggggttgagg ctgccgttgg gcgtgctgtt tttcccgaac cagcgcgggt ttttgtccac
      961 acccaaatcg actgtccgta tcgttacgct tttgcccttc atttttttga caatcgcgct
     1021 gtacacttcg tactgctcgt cttcagacgg catcgtatcg cggttcaggt aaagaaactc
     1081 gctgcggaac agcccgatgc cgtctgcgcc gagattgtgc agcggtttca cgtcttcggc
     1141 ggattctata ttgcccacaa gctcgatgca gaccccgtca gcggtggcgg cggcggtttt
     1201 tttgagcttg ttcaaatcgc gtttgtggct gcggtattcg cgggcacggc ggcggtattc
     1261 gttcaacacc gactcatccg gcgcgataat caacacgccg ttgataccgt ccacaatgac
     1321 cgtttcgccc tcggtaatca gtttgcgcgc gttgtgcagc ccgacgacgg acgggatgtc
     1381 caagctcctg cccaaaatcg ccgtatgccc ggtggggccg ccggcatcgg taacgaaggc
     1441 ggcaatgcgc tgctctttaa acaaaaccgt gtcggcgggc gaaaggtcgt ttgcaatcag
     1501 cacgatttcg tcaaacaggt tgtcggcaac ttccaactcg ttgccctgcc cgatcaggtt
     1561 gttgtggatg cggcggacga cttgcagcat atcctgtttg cgttcgcgca aataggcatc
     1621 gtccatattg tcgaattggg cggcgagttt gtcgctctgc tgcttcaatg cccactcggc
     1681 gttgattttt tgttccctta aaatatcgac gggttcgcgc gacaaggtaa catcggttaa
     1741 gagcatcagg tgtagcgaga tgaacgcgcc caactcggtc ggggcgtttt cgggaatcgc
     1801 gctgcggagc tgttccaact ctttgcgcgt ggctttgacg gcggcatcga aacgttcggc
     1861 ttcggcatcg gtgtccgcct ccgcaacatc atactgcggc acttcctccg taccgcgcgc
     1921 aatcaggtgg gcgcaaccga cggcaatgcc tttgcccgcc gccacgccgt gcagcacgat
     1981 actcattatt cgccctcgcc gaagtagccg ttgattaagt cggtcagggc gcgcatcgct
     2041 tccgcctcgt ccgcgccgtc cgtctccagt tcgatgaccg tacccttggc ggcggcgagc
     2101 atcatcagcc ccataatgct tttgccgttg acgcggctgt cgtttttcgt aacccagact
     2161 tcgctttgaa actgagacgc ggtttgggtg aatttgctgg aggcacgggc gtgaagtccg
     2221 agtttgttga tgatttcgat ggattgtttg agcatttcga ttcccgtgtt atgtatatcg
     2281 gcagcagacg ccgtttaaaa tgttttcctg ccctgccgct tcttcagacg gcatcgccgc
     2341 tgcgccggca caccaaatct tcgggcgcgg acgtgatggc gaaaatgcct tttaccgccg
     2401 cctccctgac gcattcggta aaggcggcaa ggtcttccgc cgccggcgaa tattggacgg
     2461 ccttaaccat catcggcgcg ttcagcccgg tcaaaatcgc cgatttgttt tcgcgcacga
     2521 ggcggcgggc ggcattgcag ggggtcgcgc cgaaaatatc ggtcataatc agcacgccgt
     2581 cgttgtcggg aaactcctga agcgcggcaa tggcgttgtt gatgatgtcg tcttggtctt
     2641 ccgtcggttg cacgccgagt atgcggacgt tttcaggcag tccgcccgga aaaaaatgat
     2701 gtgccagctt gcggtaggct tcgcctatgg tttcgtgtgt gatgattaaa agccctatca
     2761 tattatgcgt cctgttcctc gttgtcctac cggcgtatgg gcgcgatgcc gtctgaaagg
     2821 ccttcagacg gcatcgcgtc cttattttcc gtccaatgcg taaatctcgc ccagattgcg
     2881 ccagcagccc gccgcatcca tgccgtaacc gaaaacataa cggttcggca catccagtcc
     2941 gacataatcg gctcggatag gcttgggttt gtcaatcagc ttgttggcga acaccgccgc
     3001 acggcagctt gccgcaccca tttccaaaag tttggcttga atggcggaca tcgtatgccc
     3061 ttcgtccaaa atatcgtcca gcacgacgac gtgcctgccc cggatttgtt ccgcatcggg
     3121 catacgcttc cagttgaacg cgccgccctc cagcttgtcg ccgtaacggg aaacgtgaac
     3181 ataatcaaaa tctaagggaa aacgcaacag cggcagcaac tgccccgtaa acaccaccgc
     3241 gccgcccatc acgggcagca gcagcggata tttgccgccc aaatcgcgcg taatctcgtc
     3301 cgccactttt tgcagtgcgg cacggcattg gccttggtcg aacaaaagat cagcgttttc
     3361 aagcatcgcc tgtgtttcaa ggcgtttggt ttctaaatcg gtcatatgtc ggaatcggtc
     3421 ggtaaaagga aaattataaa ccaaagtatc ggatgccgtc tgaactgtcc tgctcagcgg
     3481 tcggtacgca cgcgcacaaa tgtggcaaat ttcggcgtgc ctttccgcgt aaagccacgg
     3541 taacggtagg taatcagcgt gccgattttg ggcgggttgt cgcggtcttt gtccttgaaa
     3601 ccgctgccga tgcggaattc gccgtgtcgg tttttgcagc cgaccgcgcc cagccgtccg
     3661 gcgtttcgcc ctttgccctc atagtgccgc gttaccgtgc attcgtcgtc gtattggctt
     3721 ttcagcttca ataattggct gctcctgccg ccgctataac gggattcggg ctggcgcagc
     3781 atcacgcctt cgccgccctg cgcttcgatt tgttttaaaa agtccatcgc gtgctgccgg
     3841 tcgcgcactt tgatttgcgg gatgatggta atcggcgcgt tcggatgcgt tttcagccac
     3901 tgcgttgcga ctgccaaacg ttggtagaga ttgccctgcg ccttaggtac gtcgaaaacg
     3961 tgcagacgga tgccgcgcca gtctgaagaa acagaacgca cggtagcgga aatctgctcg
     4021 aactgaccgc gtccgctata caattcgccg tccaaaggat aaggcggaaa ctgcgcggta
     4081 aagcctttgg ggggcgtaaa cgcgtagccc tgacggctta tcaggtgctt tccgtcccaa
     4141 taggcgcgca cgccgtcgag tttctcgctc attgcccagc ctgcaatctc ttggtctttg
     4201 tattcctgcg ccagcatcaa atccgccgcg cctgctgatg cagggatgaa aaccgccgta
     4261 aaaatcggta tgatgccgcc gattgtcttc ttaatcatct gattccccca atatcaaaac
     4321 aggcggcaaa ccgccataaa acaaacggca aacccgatgc cgtctgaaaa accgtttagg
     4381 aacacgccat gaccctacgt tacgaaatcc tctccgttac ccccttccgc caaaactgca
     4441 ccctgatttg ggacgacgaa agcggcgaag ccgtcctgac cgatgtcggc ggcgacgtgc
     4501 cgttcctgct gcaagcgttg gcaaaccgca aacttacgct cacggcaatc tggctgacgc
     4561 acggccatct cgatcacgcg ggcggcgtgg tcgaaatgtt gaaaacgcat aaagtccctg
     4621 tcctcgggcc gcatccggac gatgaattcc tgctccaatc gctgccgcaa accaccgcgc
     4681 aatacggatt tcccgtctcg cccgcctttg cgccgaaccg ttggctcgaa gaaggcgaaa
     4741 cgctcacggt cggacgctat gcctttcaag tgctgcatat tccgggccat acgccgggac
     4801 atatcgtctt ttattgtgcc gaggcggaat tgctgattgc gggcgacgtg ctgttttacg
     4861 aaaccatagg cagaaccgat tttccgcgcg gcaaccacgc cgacttaatc aataatatcc
     4921 gcaacaaatt attcaccctt cccgaaaccg tgcaagttgt cgccggacac gggcgtatga
     4981 cttccatcgg acacgaaaaa cggcacaatc cgtttttcta accgacttca ctacggtctt
     5041 cagacggcgt catctgcact gatgccgtct gaaacgcaaa aggctcaggc aaccgccgcc
     5101 ttgccggtgt acctcgccgg acaaggcttt ggtaagtact tcaaaccaac cccaaatcag
     5161 aaccggtaca gttacgccgc gctttcggca ttcccgcccc tgctgaaaca agcttttccg
     5221 cacaagtcag actgcttcat cttctgccac atattccaaa gattccgaca acgccgttgt
     5281 ttcattggca cgttcggtca aatcgcgtgc aagctgcttg tttgccttca cacccaacag
     5341 acgcagtttc tcggcgcggc cgaccagatt cccgcgcccc tcggcaagtt gcttaaatgc
     5401 cgtctgaaag ctgttttgcg cctgatcgat gcctttgccg acgctttcga gcgtctgtac
     5461 aaagccgaca aatttgtcgt acagcttgcc gccttcgtcc gcaatcgcca gcgcgttttg
     5521 gttttgctgc tcgttgcgcc aaatattcgc caccgtccgc aaagtcgcca gcagcgtact
     5581 ggggccgacc agcataatcc gtttgtcgaa acactcttgg aacaagccag cgtcattctg
     5641 caacgccaac aggtaggccg gttcgacagg gataaacata aagacgaaat ccaatgtgtt
     5701 cacaccttcc aaatcggtgt aatccttcag cgacaagcct ttcatgtgtg cacggatgct
     5761 ggcaacgtgt gccgccagtt cgcgtgccgc cgtatccgca tccgccgcct gcgtgtagcg
     5821 cacataagct gtcagcgaga ccttggaatc aatcacaatc tgcttgttgt cgggcaggtt
     5881 gaccaaaacg tcgggctgga ggcggcgcgt gccgccgtct tcctcttttc ggacggatgc
     5941 cgcctgaacc acatattcgc gccctttctg gaggccggaa ttttccaaaa ccgtttccag
     6001 aatcatttcg ccccaattgc cctgaacctt gttctgcgta ccggtcagcg cgttggtcag
     6061 tgcctttgcc tcgctgtgca gctgcgcatt caatccttga agccgtttca attcgttttc
     6121 caacgtcagc cgctcgcgcg attctttatc ataggtttgc ttgaccaact cgccgaaacc
     6181 gtggatgcgt tcgttcaacg ggttcaaaac ctgatggagc tgctctcggt tctgctcggt
     6241 aaaacggcgg cttttttctt ccaaaatcgt gttggcaaga ttttgaaact gatcgctcaa
     6301 actcttgcgc gcctcgccca gtaaggacag cttctcttca gaagcaaggc gttcctgttc
     6361 gatttgcgtt gccaaacgtt cgttttcaac cgccaaaccc tgtgcctttt cctgcaaatc
     6421 gatatgcgac tgcctcaacc gctccgcttc tgcctctttt tcctgcaaat gggcaatctg
     6481 tttttcggct gcggcaaaac ggttgcccac atcggaaagg tcgttttgca cgtcgcggag
     6541 agtttggcgg ctttcttcca aatcggtttc gactctttgg cggatttggc gttccagcgc
     6601 atattgatcg gcaaacgcct tccgctcctg tccgagctgg gttgccaaac gttcgttttc
     6661 aaccgccaaa ccctgcgcct tttcctgcaa ctcgatatac gactgcttca gacgcgccga
     6721 ctccgcctct ttttcctgca aatgggcaat ctgcttttcg gctgcggaaa aacggttgcc
     6781 caaagcataa ttttcgtctt gcaaatgctc gtatttccca tccaaaacgg ctaattccga
     6841 tgcaatttct gcgtgtgcct gttcgacaaa atcacatctt gccgcctttt ccgccaattg
     6901 cgcgttcaat acggctaata caccttgaaa ccggctcttc atcagtaacc atgtaaacaa
     6961 cacgcctgac agcaaagccg ccagcaatag caacacagtc atcagctcca taaatcatcc
     7021 taatattcaa acattttcac accggacaaa accgccgctt attccgattc tacctgtttg
     7081 ttcgacatag ctccaaaaaa tatagcggat tggctttaaa cctgttcgac atctccttac
     7141 catgctgctt gcggtttcag accttttcct aattcaatat caatctgcca caaaccctga
     7201 ttaagttccc gatgtctgac atttttagaa tgatgccgtc tgaaatgttg cagctatgtt
     7261 cagacggcat acggattcag gcttttcaaa cggcaggcaa aatgaaaaaa gggcaaaccc
     7321 taaaggattt gcccttttgt tccaaacgct tagtgtacgt ctttccaata ttcttttttc
     7381 aggaaatacg ccaaaggcag cataaccgca aataggaaaa tcatcacgac atagcctata
     7441 cgtttgcgtt gcagttgtgc aggttcgccc atgtacacaa ggtaattgac caaatcgcgt
     7501 acatatgcgt cgtactcttt ttggatcact ttgccgttag gcagacggcg gctgtgcaaa
     7561 ccggtagatt cccaatacag cttaggcttc atctcgccgt gttcgtcttt taccataacc
     7621 ggctgacctt tggcatccaa ctcaacggct tgaacgcctt gctgttccca caacgggtgg
     7681 ggcataccga ctttatcgaa tacagtattg ttccagccgc tcggacgggt cggatcttta
     7741 tagaagccgc gcatataggc gtaaaggtag tctgcacctt tggaacgcgc aatcaacgtc
     7801 aaatcgggcg gagcagcacc aaaccatttt gccgcatctt tcgggttcat cgccgaatgc
     7861 atgacatcgc cgacattatc ggtggtaaac atcaggtttt tcttgatttc ttcgtcagtc
     7921 aaaccgatgt ctttcaaacg gttgaaacgc ataccgcttg ccgagtggca ggacaggcaa
     7981 tagttggtaa agatttgtgc gccgcgctgc aggctgactt ggtcgcgcaa atcgatatcg
     8041 actttctcat agtgtgcatg accgcccgaa gcaaatgccg cacccatggg tactgccaac
     8101 agcaaggcag caaaccaatt tttcatagct tgtttcattt tgactgccct catcagatgt
     8161 tggttgcaaa caggtaagca cccacggcgg taatgccgac gtaaacaaag aacatgattt
     8221 tttgtttggc ggtgctcatg gttacgcgtt cgggaaccgg tttgttttta tccagcttgg
     8281 tatagaacgg catacccagg aagaatgcga aatagacgaa agacaggatg cgcgcgacca
     8341 aagtacgcgt atcggttgcc accatcgcgc ccaaaatacc caaaccgata aaggaaatga
     8401 tgaacaagac caatgcggtt ttgaaaatcg gaccgcggta acggacggat ttcacctcgc
     8461 ccctatccag ccaaggcagc agggcaatca acacgaccgc cgcgcccata ccgattacac
     8521 cccaaacctg cgttcccaag aacgagggaa tcgcacgcaa aatggcgtag aacggtgtga
     8581 aataccatac cggcgcaatg tgcggaggtg ttttcagcgc atttgccgca tcgaagttcg
     8641 gcgcttcgag gaagtagccg ccgccttccg gtgcgaagaa caatacggca cagaagacaa
     8701 tcaggaatac aaccacaccc aagatgtctt taacggtata gtaaggatgg aatgggatac
     8761 cgtcgcgcgg gataccgttt tcgtctttgt ttttcttgat ttcaacgccg tcagggttgt
     8821 tagaacccac ttcgtgcagg gcgatgatgt gcgccacaac caagccgagc aataccagag
     8881 gtaccgcgat aacgtgcagg gcaaagaaac ggttcagggt aacgtcggaa acgttgaagt
     8941 cgccgcggat ccaagtggac aaatccggac cgataacagg gatggcggag aacaggttaa
     9001 taattacctg cgcaccccaa aaggacatct gaccccaagg cagcaggtag cccataaagg
     9061 cttccgccat caatgccaag aaaatcaggg agccgaaaat ccacaccaat tcacggggtt
     9121 ttttgtacga accgtaaatc aaaccacgga acatgtgcag ataaacaaca atgaagaaga
     9181 aagatgcgcc ggtggaatgc atgtagcgga taatccaacc gccggacacg tcgcgcatga
     9241 tgtactcgac tgcggtaaag gcagcaggca gatggtaggc gttaaggttg ccgtccggtt
     9301 tgtagttcat ggtcaggaaa atgccgctga cgatttgaat cacgaggaca agcagggcca
     9361 aagagccgaa gtagtaccaa aaattaaagt ttttcggtgc gtagtattga gccaaatgct
     9421 cattccacat tttagacagg gggaaacgag cgtccatcca gcctaacaat gcttttgctt
     9481 tgctattggt ttggtttgcc ataattatcg ttccttattc ttagtcttcg cccaccaaga
     9541 tagttgtgtc gctcaagtat ttatatggcg ggacaaccag gttggtcggg gcaggaacac
     9601 ctttatatac gcggccggcc aagtcgaatt tcgaaccgtg gcaggggcag aagaagccgc
     9661 ctttccagtc tgcacccaaa tcggcggggg caatgtcggg acggaaggtg ggcgagcagc
     9721 ccaaatgggt gcagataccg atggcgacaa ggatgttcgg cttaatcgaa cgggtctcgt
     9781 ttttagcata ctccggctgc tgttccgcat cggaattggg atcggtaagt tcgccgttca
     9841 ggcctttcag gtctttaagc tgctgatctg tacggttgag cacccaaatc ggtttgcctt
     9901 gccactcggc ggtcagcagc tgacccgctt cgattttact gacatccacc tcgacggcag
     9961 caccggcggc cttggctttt tccgaaggga aaaaactggc cacaaacggc gttgccacac
    10021 ccaatgctgc cactccgccc gcgccgcagg tcgcgagtgt caggaaacgg cggcggccat
    10081 tgttgatttc ttgattatcc attattcagt cgtcctaata ttttgggaat accgagccat
    10141 taaacgttgc aattttaccc agtttgcagt gatactcaaa gcattattta aaataaggta
    10201 aagttttatg atatttctca agactcaagc cggattgttt tcgtcaaaat ggcacacttc
    10261 caacccgaaa acctctgccg ccgattctgc cagcgcgcgt acgccgtaac gttccgtcgc
    10321 gtgatgccct gccgaaatga aagccgtacc cgtttcattg gcaaggtggt attgggcttc
    10381 ggaaatttcc cccgtcaaat acagatcgac accttcgtct attgccgtct gaaaaaaccc
    10441 ctgcgccccg ccgctgcacc atgcaacccg tcggatttcg cgttcgggtt tgccgatgac
    10501 gacaggctta cgttgcaaaa ctgtttcaat atgcgccgcc aatgcgccga gtgtcttggc
    10561 ttgtttcagg ctgcccgagt tgagcaggtt ttgttcgccg aaccgttttt ctgtcgcaaa
    10621 acccaatctg tcggcgagtt gggcattgtt gcccagtgtg ggatgtgcat ccaggggcag
    10681 atggtagcct gccatattga tgtcgtgccg taacagtgcg gcaatccgtt cttttttcca
    10741 accagtaacg gtcggcaact cgtttttcca gaacataccg tgatgtacca aaagcaaatc
    10801 tgccttctgc tccacagcaa aatcaatcgc tgccctgctt gccgttaccg acgtaacgat
    10861 tttcccgata tattccctcc cttcaacctg caaaccgtta ggggcgtaat ctttaaacaa
    10921 cgctgtctgc aatgtttcat tacaccaagt cagaaaatcc ctgcgcaata ccatcttttt
    10981 tcctaatcgc tttaaacaag cgggcattct aatcgcaaaa tgtctggaat tcacattttt
    11041 ccgatttgca cccgcatatg aattatttta atatgcgccg gttcaatatg ccgtctgaaa
    11101 cctcatggat tccatcatcg aactgcgcca cctcaagacc ctgctggcac ttgaagaaac
    11161 cggcagcgtc tcccttgccg ccaaacgggt tttccttacc caatctgcac tttcccacca
    11221 aatccgtatg cttgaaaacc actacggcgc accgttgttc gaacgaaaat ccacgccctt
    11281 gcgctttacc ccggttggag aaaggctgtt acgcctcgct cacgacctgt tgcctcaagt
    11341 taccgatgca gaacgtgatt tggcacgcat tatagaagga gaggcaggag aattgcggat
    11401 tgccgtcgaa tgccatacct gtttcgactg gctcatgccc gcaatgggcg aattccgccc
    11461 gatatggccc caaatcgaat tggatatcgt atcgggattc caagcggacc ctatcggact
    11521 gctgctgcaa caccgcgccg atcttgccat tgtttccgaa gcggaaaaac aaaacggtat
    11581 ttctttccaa ccgctgtttg cctacgaaat ggtcggcatc tgcgccaaag atcacccgct
    11641 tgccgccaaa actgtctggg aagccgaaga ctttatcggg gaaaccctga ttacttatcc
    11701 cgttcccgac gagatgctgg atttgcccaa aaaaatcctg attccgaaaa acatcaaccc
    11761 gccgcgccga cacagcgaac tgaccatcgc cattatccaa ctggttgcca gcagacgtgg
    11821 cattgccgcc cttccctatt ggacagtcat gccctacctt gaaaaaggct atgtcgttca
    11881 ccggcagatt actgccgacg gattgcaaag caaactgtat gccgccatcc gtaccgaaga
    11941 tacggacaag agctatctga acaatttttg ccaaatcata cgcgaacgcg gttttgcaga
    12001 tttgcccgga ctgagcgaac tggaaccggt ctgacccctt attcaaccat acccggcagt
    12061 ttttctattt tttcatgtat agtggattaa caaaaaccag tacagcgttg cctcgccttg
    12121 ccatactatt tgtactgtct gcggcttcgt cgccttgtcc tgatttttgt taatccacta
    12181 tactgttttt gatttttgcc caatctgtaa tctttagatt gccaatggga aaccgtctac
    12241 tacaaataaa aaaaccctgc gataagcagg gttttttgaa tttccaacat taacgtttgg
    12301 agaattgttt tgcacggcgt gctttgcgca gacccggttt tttacgttcg acttcgcggg
    12361 catcgcgggt aacaaaaccg gcttgagaca aggcgggttt caacgcggca tcgaagtcga
    12421 tcagggcacg ggtaatgccg tggcggattg cgccggactg gccggtttcg ccgccgccaa
    12481 caacattgac tttgatgtcg aaagattcgg cgttttcagt cagaaccaag ggttggcgaa
    12541 caaccattcg gctggtttcg cgtgcgaaga attcgtcaac gggacggccg tttacgatga
    12601 tttgacctgt acctttaatc aggaatacac gagccactga acttttgcgg cggcctgtgc
    12661 cgtagtagta tttaccgttc atgtcgcgtc cttatttcag ttccaaaact ttgggttgtt
    12721 gcgcagcatg ggcgtgttcc gcacccgcat acactttcag ttttttaatc atggcgtaac
    12781 ccaaaggacc tttgggcagc atacctttta cagcttgttc caaagcgcgg cccgggaatt
    12841 gctcttgcat ttcgcggaaa gtgcgttcgt agataccgcc tgggaaaccg gaatggcgga
    12901 agtatttttt atcttcgaat ttggcaccgg ttacacgcag tttgtccgca ttgataacaa
    12961 tgatgtaatc gccggtatcg acgtgggggg tgtattcagg tttgtgtttg ccacgcagac
    13021 ggctggcgac ttcggccgca acgcgaccca agactttgtc ttgggcatcg atgacgaacc
    13081 attcgcgctt cacctcgtgg ggtttcgctg aaaaggtttt catagtggaa atccaaatag
    13141 atatagaaag ttgtaaattt taaagacagg attcgatttt gtcaatcgca ttaccgcgtt
    13201 acggaaggat tttccggatt tcggcagact gcatactgct ttttcgggcg gggcggcggc
    13261 caatgtgaaa aaccgcatcg ttgcgatgcg gttttgaatg ggaatccccg cgagagccgt
    13321 ttcggccgaa tccgcttgaa ccttgctgac aaggcggctg cctcgggtag tttcgggtgc
    13381 gtccgcaaaa ggacgctcgc gcccactact gctcccggca accttaagcg aacttattgg
    13441 ttcaaaggaa tatatgcctt cgcggacacc gcagggaaaa aggggttatt cctgcgccaa
    13501 gcgggatagt gctttttggc aggcgttgtc catatcggct attttacgcg caaaatcgcc
    13561 gattgccaaa tcgccgccgt tcagggaggt tttcaacagg tcgtggacga cgttgagcgc
    13621 ggccataatg acgatttttt cgctgtccgc gacgcgtccg ccttcgcgga tggcttcggc
    13681 tttgccgttg agcattccga ctgcctgcaa cagtgtgtct ttttcttctg ccggcgtgtt
    13741 gacggtcagc cgggcgtgca tgacttcgat gtggacttgt tcgatgttca tcctttaatc
    13801 cttattgctg cgtttcctgc cattggggga ggcgcgctgc cagtgcgctg attttttccc
    13861 tgctctgttc gagcaggctg cggtatcgtg tattttcttc tgtcaggctg tcgattttgt
    13921 tttgcaggtc ttctttgagt ttgccgactt ggacgagcag ggcttcgctg agttcgtcga
    13981 cggcggtttc gtgttcgagt ttttgccgct cgtgcgcccg tttgagttcg gcgacggttt
    14041 ctttgaggcg gcggttttcg ctgacgaggg tttcgaattt ttgtaccagc gtataaacgc
    14101 tgctttcgag tttttcgata ttttgtttca taaccttacc tgtccgtatg ccgtctgaag
    14161 gcttcagacg gcatctgtct gttgtttatt caaaacgcgc gctgcgttcc atcagccttt
    14221 cgacgacctg ttgcggggtc atttctttgc ggatgagttg cagcagggtt tgggtaatcg
    14281 gcatgtcgat ttggtactta caggcagtat tgaagacttc ttctatcgtg ctgacccctt
    14341 cggaaacgtg tccgatttcg accagcacct gatgcagttc cttgccttct gccaaaccca
    14401 agccgacgcg gcggttgcgt gagagtgcgc cggtgcaggt caagatgagg tcgccgatgc
    14461 ctgccagccc catcatggtt ttgggctgtg cgcccattgc ggaggcaagg cgggtgattt
    14521 cagctaatcc gcgcgtaacc agtgcggcgc gggcgttaag cccgtactct agaccgtcgg
    14581 acaatccggt ggcaatcgcc ataacatttt ttaccgcgcc gccgactgcc acgccgataa
    14641 catcggtact gccgtaaagc ctcatgacgg tcgtgttgag ctgcggtacg agttcttcaa
    14701 tccactcttg gttttcggag gcgaggacga cggcgcaggg cagttgtttg gcgagttcct
    14761 gtgcaaaact cgggccggag agtacgccga ttttcttatt gtcgggcaat acttctttca
    14821 atacttgaaa ggtcagcagc cctgtatcct gctcgaatcc tttgcaggcg gcgaggacgg
    14881 ggaggtgtcc cgcgccgtac tgtttgagca gctctgcgct gcttctcaat ccggcaacgg
    14941 aggttacgat aaggacaagt ccgctgtctt tgagcgcgtc tgccaaatcc gcacacactt
    15001 ccagcgtttc aggaaagggg aaaccgggca gcccgtgctt gttttcacgt tcttccttca
    15061 tttggcggac ttgatctgcg ttgcgcgtcc atagggatac gcggttgccg tgttgggaaa
    15121 aatgcagggc gagcgccgta ccccacgaac ctgcgccgat aacggtaatt ttcattggtt
    15181 gtctttcaac atatcactgc cgttcacttt aaaacaatcg ctgtttctct gcaagtgcag
    15241 acagggaaat gccgtctgaa aggcgttcag acggcatttt gccccgatgc ggcactatca
    15301 gcctgtattg cgcaaacctt gcgccacgcc gttgatggtc aggtgaacca tcagcagcgc
    15361 gtgcggattg tcgggttctt tacgcaggcg tttgagcatg gcgacctgca ggccgttgag
    15421 cgcgttcagg tatggaatcc tcaaggcgag cgaacgggcg aggctgcggt tgtcgcgcaa
    15481 aagctcttcg gtttgcagca ggtcgagcag tgctttgcgg ctgcgtcggt attcttcctt
    15541 aatcatcccg aagatgattt ttgccttatc gggcgattcg ctcaagccgg catagttttc
    15601 cgcgagggtg atgtcggttt tcgccatcac ttgttccata ttggagagca tggcttggaa
    15661 gaacgggttg ctttgggcat gttcgcgcag ggcggcgagg gtttcgggtt tgtcttcgca
    15721 caaggtttct accgcgctgc cgaaaccgta ccaagccggc agcatgaggc ggttttgcat
    15781 ccaggagaat acccacggaa tcgcgcgcaa gtcctgaatc cgcgccaagg ttttgcggct
    15841 ggcgggacgg ctgcctaggt tgagggtggc gatttcctga atcgggctgg tttgcagaaa
    15901 gtagtcgatg aagtcgggat gggtaatcag ttcgcggtag tatttgaacg atacgtccga
    15961 caatgcctgc atcagtttgg catcagggtc ttttttatcc ggcaggatgc tggcttccaa
    16021 agtcgcggca accaaggttt ccaagttgcg ttgggcattg ccggggtcgg cgtatttggc
    16081 ggtaatgact tcgccttgtt cggtaatgcg gatttgtccc gccacgctgc ccgccggttg
    16141 ggcgagaatg gcttggtaag aagggccgcc gccgcgtccg acgctgccgc cgcgaccgtg
    16201 gaacaggcgc atgcggacat cgtatttttt gaagagttcg accaagccca attccgcctg
    16261 atacagacac catgagctgg taacatagcc gccgtcttta ttggagtcgg agtagccgag
    16321 cataatttct tggatgttgc cgcagctttc gagcagggca tcgtaccaat cgaggcggaa
    16381 catggtttcc atgaccggac aggcgttttc gagtgcttcg atggtttcaa acagcggcac
    16441 gatattgatg cggctgcgcg gtttgccgtt ttccaccgcc agcaggccgc tttctttcag
    16501 cagcaatgcc aaggcgagca ggtcgctggg ttgttcgcag ttggaaataa tgctttgtgt
    16561 aacggcatct tcgccgaatt cgtctttgat tttgcgcgct tcgttgaaaa ttgccagttc
    16621 gtggcgggta tggtcgctgt atgtgatgaa cgggctgtac agcggacgtt gatggctcaa
    16681 ttcgcgcaac agggcggctt gtttttgctc ttcgttcagg ctgttgtagt cttccaagcc
    16741 tgcgtgttgg aaaagctcgg caaccacatc ggcgtgtttg cctgcgtgtt ggcgcaggtc
    16801 gagcggcatc atgtggaagc cgaacacgga cacggaacgg atgaggtctg ccaaacggcc
    16861 ttcagcaagc aggcggctgc cgttgtcgat aagggaacgt tgcaattttt tcaaatcatc
    16921 gagaaattct tgtgccgaag catacggctc gagaaagccg aatttgcagc ccatgcccaa
    16981 accgagcgcg cgcgctttgc ccatagcgcg cgccatgatg taagcaatgg cgcggcggta
    17041 gggttcttcg gtgcgagcga tttcttcgtc aggcgagagg gctgccagtg ccattacgtc
    17101 gtcgttgact ttgacgcggc ggatggagag cggcagttcg cggtaaagtt tgtcgagttc
    17161 gccacggtaa aaacggaaca cggcatcggc gtggcggcgg aaggcaaaac gcaaggtttc
    17221 ggcagaaacg aacggattgc cgtcgcggtc gccaccgatc cagccgccga ttttgaggat
    17281 gttcggaacg cagacatcgg gatagaccat ctgaaagtcg tgttccatat tgcggtagag
    17341 cttgggcagg gcttcgaaaa agctcatcgg gaagatggac acgccgttgt tgatttcgtc
    17401 gttgacgctg agtttgtggc ggcgcgtttc gctggtctgc cacaagccca gcaggatagt
    17461 gtcgatttcg cggcgcagcc gtgccagcgc gtcggcattg gtgcagcgtt cgcgttgcgg
    17521 caacagtgcg cggatgcggc ggttgaagct taagacggtt tggcgttgca cttcggtcgg
    17581 gtgcgcggtc aaaacggcgg taacggacgt attgtccaac tgccgctgca ccgatttgcc
    17641 gtcggctttc cccgctttga gcctgcggac ggtttccgtc aggctgcctt ccgcgccgcc
    17701 gcgtccggct tcttcgtgga tttggcggcg gcgttcgtgg tgcacgtctt cggcgatatt
    17761 caaaatctgg gcgaacaggc cgcaggccaa ggttaaatcg tgggtttgtt gttcgtccaa
    17821 ttgcggcaat actttttcaa tcaatgccgc gctgtcgtcg gaagtggaca agagtttgac
    17881 cgtttcgaca accaacggcg aggcttcttc gtgcaggagg ttgaacaggg attgtttcag
    17941 aaattccgcg tccgccgcca aagccgcgtc cttcggattg ttcagaatat gcagttgcat
    18001 gatttttctc tcattgccgt aaatactgta aatgtacctc aaatgccgca tccgtgccaa
    18061 accgttcaca ctttaaccgc ccgtgtcccg aaatgccgtc tgaagttgaa cgccgcccga
    18121 cggcagcgtt acaatcgccc gcaactgttt tttccgaaca tcatcatgac cacgaccgaa
    18181 cacgacaacg acgacgaact cctgctgcgg tacagccgcc acatcctctt ggacgaaatc
    18241 ggcatcgaag ggcagcagaa actttccgcc gcgcatattt tggtcgtcgg ctgcggcggt
    18301 ttgggtgccg ccgccctgcc ctaccttgcc gcttccggca tcggcacgct gaccatagcc
    18361 gattccgaca cggtcgagct gcacaacctg caacgccaag tcgcatttga cgagggcgat
    18421 gtcggcaaac tcaaaaccga agccttggca gaccgcctga aacgcatcaa ccataccgtc
    18481 aacgtccgcg ccgtcaacga aaaactcgac ggctgccgcc tgaccggttt ggttcaagcc
    18541 gccgacatcg ttttagactg ctgcgacaac tacgccacgc ggcaagccgt caaccgtgcc
    18601 tgcgtacaaa cgaaaacacc gctggtttca ggggcggcgg tacgctttga agggcaactt
    18661 gccgtgtacc gtcccgactt gcccgactcg ccgtgttacg cctgcctgtt tgacggcgga
    18721 tcggcttcag acggcatctg ttccctcttc ggcgtattct cgccgctggt cggcatcatc
    18781 ggcagtaccc aagcggcgga ggctctgaaa atcctgctgg atgcgggcga accgtcgcac
    18841 ggcaggctgg cggtttaccg tgccttggaa gggggctggc aatatttcga cctgccgcgc
    18901 aaccccgaat gcccggtttg cggcgcggaa cggtaaaacc ctgccgccgt ttcagacggc
    18961 atccaaacgg atgcggagga acggttttaa aaatttaaaa atttacattt ctttgcaaaa
    19021 aaaaaaaaaa aaaaaaaaaa aaaaaaaaat aaacttacct tataattgca gttgttttag
    19081 caatgtctgt ttcgcagact cattgagtaa gacgttttcc ccgtaatgtg tttggccgtc
    19141 tgtccccttt gggttcggac ggcttttttt tggctgtgta tgaatacccg gttggtttta
    19201 tctgtttaca ggggaaaacc gcttatttcc gttcgggcgg aaaacggttc catcggataa
    19261 aaggcatttt gtccgactga ttaa
//
LOCUS       DAXHPV010000025        18151 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.025, whole genome shotgun sequence.
ACCESSION   DAXHPV010000025 DAXHPV010000000
VERSION     DAXHPV010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 18151)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18151)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18151
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.025"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(129..815)
                     /locus_tag="ACFM6C_000622"
     CDS             complement(129..815)
                     /locus_tag="ACFM6C_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:1990397 - queuosine salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HFC6158119.1"
                     /translation="MYAFTDAQQQKALFWLVLFHILIIAASNYLVQFPFQIFGIHTTW
                     GAFSFPFIFLATDLTVRIFGSHLARRIIFWVMFPALLLSYVFSVLFHNGSWTGLGALS
                     EFNTFVGRIALASFAAYALGQILDIFVFNKLRRLKAWWIAPTASTVIGNALDTLVFFA
                     VAFYASSDEFMAANWQGIAFVDYLFKLTVCGLFFLPAYGVILNLLTKKLTTLQTKQAQ
                     DRPAPSLQNP"
     gene            complement(892..1365)
                     /gene="queF"
                     /locus_tag="ACFM6C_000623"
     CDS             complement(892..1365)
                     /gene="queF"
                     /locus_tag="ACFM6C_000623"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0033739 - preQ1 synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046857 - oxidoreductase activity, acting
                     on other nitrogenous compounds as donors, with NAD or NADP
                     as acceptor [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preQ(1) synthase"
                     /protein_id="HFC6158120.1"
                     /translation="MSRNTEELQGISLLGNQKTQYPAEYAPEILEAFDNKHPDNDYFV
                     KFVCPEFTSLCPMTGQPDFATIVIRYIPHIKMVESKSLKLYLFSFRNHGDFHEDCVNI
                     IMKDLIALMDPKYIEVFGEFTPRGGIAIHPFANYGKAGTEFEALARKRLFEHDAQ"
     regulatory      complement(1369..1413)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00522"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="PreQ1 riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF00522"
     gene            1807..2961
                     /gene="farA"
                     /locus_tag="ACFM6C_000624"
     CDS             1807..2961
                     /gene="farA"
                     /locus_tag="ACFM6C_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid resistance MFS efflux transporter
                     adaptor subunit FarA"
                     /protein_id="HFC6158121.1"
                     /translation="MDTHADETKLQNTQAKRKRRLTALTLLFALAAAAAGSAFFLWWQ
                     HEEETEDAYVAGRVVQVTPQKGGTVRKVLHDDTDAVKKGDVLAVLDDDNDVLAYERAK
                     NELVQAVRQNRRQNAATSQAGAQVALRRADLARTQDDLRRRSALAESGAVSAEELAHA
                     RAAVSQAQAAVKAALAEESSARAALGGQVSLREQPAVQTAIGRLKDAWLNLQRTQIRA
                     PADGQVAKRSVQVGQQVAAGAPLMAVVPLSDVWVDANFKETQLRHMKIGQPAELVSDL
                     YGKQIVYRGRVAGFSAGTGSAFSLIPAQNATGNWIKVVQRVPVRIVLNREDVDRHPLR
                     IGLSMTVKVDTSAAGAPVSKTPGAALPEMESTDWSEVDRTVDEILGQSAP"
     gene            2985..4511
                     /gene="farB"
                     /locus_tag="ACFM6C_000625"
     CDS             2985..4511
                     /gene="farB"
                     /locus_tag="ACFM6C_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid resistance MFS efflux transporter
                     permease subunit FarB"
                     /protein_id="HFC6158122.1"
                     /translation="MDYPPLKGAALAWVTLSLGLAVFMEVLDTTIANVAVPVIAGNLG
                     AATTQGTWVITSFSVANAVSVPLTGFLAKRIGEVKLFTAAAVGFVITSWLCGIAPNLQ
                     SLVVFRILQGFIAGPLIPLSQSLLMASYPPAKRTLALALWAMTVVVAPVLGPILGGWI
                     SGNWHWGWIFFINIPIGIISAWITWKHLKYRETETVKMPTDYVGLTLMVVGIGALQMM
                     LDRGKELDWFASGEIITLGVVALVCLSYFIVWELGEKYPIVDLSLFKDRNFTVGVIAT
                     SLGFMVYMGTLTLLPLVLQTNLGYTSTWAGLAAAPVGILPVFLSPLIGRFGNKIDMRL
                     LVTASFLTFAFTFYWRTDFYADMDIGNVIWPQFWQGVGVAMFFLPLTTITLSHMKGGQ
                     IAAAGSLSNFLRVLMGGVGVSVVSTLWERREALHHTRFAEHITPYSATLHETAAHLSQ
                     HGVSDIQTLGIINNTITQQGFIIGSNEIFMAGSLLFIIMIPVIWLAKPPFHNGGGGGH
                     "
     gene            4761..4994
                     /gene="rpmB"
                     /locus_tag="ACFM6C_000626"
     CDS             4761..4994
                     /gene="rpmB"
                     /locus_tag="ACFM6C_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007586227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HFC6158123.1"
                     /translation="MARVCKVTGKRPMSGNNVSHANNKTKRRFLPNLQSRRFWVESEN
                     RWVRLRVSNAALRTIDKVGIDVVLADLRARGEA"
     gene            5023..5178
                     /gene="rpmG"
                     /locus_tag="ACFM6C_000627"
     CDS             5023..5178
                     /gene="rpmG"
                     /locus_tag="ACFM6C_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009766925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HFC6158124.1"
                     /translation="MRDKIKLESSAGTGHFYTTTKNKRTMPGKLEIKKFDPVARKHVV
                     YKETKLK"
     gene            complement(5457..5765)
                     /locus_tag="ACFM6C_000628"
     CDS             complement(5457..5765)
                     /locus_tag="ACFM6C_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158125.1"
                     /translation="MTNNVDLKVPVKRYFTLDELCGLLQISPYGFAQWQHDHGVVVGY
                     GGERYTRLDVVKLLKLQSTFAPYAEGAESGSDGNRPVTLQEIGDGLKELLADLDKELC
                     "
     gene            complement(5749..6051)
                     /locus_tag="ACFM6C_000629"
     CDS             complement(5749..6051)
                     /locus_tag="ACFM6C_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002641098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HFC6158126.1"
                     /translation="MTLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEE
                     IKISGFGNFQLRDKPQRPGRNPKTGEEVPITARRVVTFHASQKLKSMVEHYYDKQR"
     gene            complement(6125..8488)
                     /gene="pheT"
                     /locus_tag="ACFM6C_000630"
     CDS             complement(6125..8488)
                     /gene="pheT"
                     /locus_tag="ACFM6C_000630"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HFC6158127.1"
                     /translation="MQFSYSWLKTQADTELSSDKLEHLLTMSGLEVEEAETAAPAFAG
                     VVIAEVKSVEKHPDADRLNVTRVDAGTGGLVQIVCGAPNVKAGIKVPCSLPGAVLPGN
                     FKIKPTKMRGVVSDGMLCSTDELGLPDDGVNGLHILPEDAPVGTNIREYLDLDDTLFT
                     LKITPNRADCLSIKGIAREVSALTGCAFRQPEIHTAPITGSRKQPVQINAPADCGRFI
                     SRVIENVNAKAATPDWMKQRLERSGIRSISALVDIGNCVMLEIGQPMHVFDADKLSGS
                     LHIRRAREGETLECLNEKTVSLSENTLVVADEKGVLSLAGLMGGAASAVSDGTQNIVL
                     EAAWFAPEIIAGKSRQYGFGSDSSFRFERGVDYRLQADAIERATELVLQICGGAAGEM
                     VEAQGELPEAKQVGLRLDRLKTVLGVDIPAEQVETILQHLGLQPEKTAEGFRVTAPSF
                     RFDIEIEADLIEEIGRVYGYENIPDDYTSGRLKMLELPETRRPRFAVYNEMAARGYRE
                     VVSYAFVDEQWEQDFAANADPIRLQNPLAAQYAVMRSTLIGGLVEILQNNLNRKQNRV
                     CVFEIARVFSKGSDGQFVQNERIGGLWYGAVMPEQWGGKTRNADFYDIKADVENLLKN
                     KAVEFVKTGHPALHPGRAANIVSDGKVIGFVGELHPKWLQKYDLPQAPLVFEIDMAAV
                     LECGKTRYRVVSKFQPVRRDLAFVMPEAMSHDDLLLVLKGAANKLVQEISVFDVYRGT
                     GLPEGMKSVAVKVILQDMENTLTDEAVEPLIGKLIGAATAAGARLRS"
     gene            complement(8524..9042)
                     /locus_tag="ACFM6C_000631"
     CDS             complement(8524..9042)
                     /locus_tag="ACFM6C_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158128.1"
                     /translation="MSEIINLTESGITFNLVKNNLFYIEPYIRKRRQEGIKTVEFIYL
                     QEDNLLFVEAKQSIPNQERSPERFDEYISEIYQKWCNALNVEILGILGREDIKETIMP
                     SAFSNLQWGSIEIKLLLVIPDVPLNYLGQLNELIKQEFNKKDTLRLISLWNISVEVIN
                     RDLAIQKGLASS"
     gene            complement(9049..10113)
                     /locus_tag="ACFM6C_000632"
     CDS             complement(9049..10113)
                     /locus_tag="ACFM6C_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFC6158129.1"
                     /translation="MIKSFWLENFGPISLLKADNLGKINLIIAENSKGKTFILKALYS
                     VLKSHEEAHKGKNIRDFSEELRDKLYWTFQVEEIGDLVTRGKENPNERPLKLSMTLED
                     SSSVLFSFGRTTKKLIKPELYELSPRINANSIFLPPKEVLSLFDVIKKSEEEKRFGFD
                     ATYIDLVKALDIKPTKGRNYPEAAEARKDLEALFGGYVSYNDKKKAWVYEKDRQTFSI
                     NSTAEGVKKIGILDTLLGNRFLSPGSILFIDEPEANLHPKAINQFLEILFSLSKSKLG
                     IQIFMSTHSYFVIKKLCLLARKHSESIPVFMPGKEKEQTTWVQENLQNSMPDNEIIGE
                     SIRLFREEIGVLSPETAWIG"
     gene            complement(10290..11282)
                     /gene="pheS"
                     /locus_tag="ACFM6C_000633"
     CDS             complement(10290..11282)
                     /gene="pheS"
                     /locus_tag="ACFM6C_000633"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003744233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HFC6158130.1"
                     /translation="MENVNRIVAEGIAAVEAAQDFNALEQIKARYLGKTGELTGLLKT
                     LGQMSPEERKTIGAHINECKNRFQTAFNAKRDALNEAKLQARLAAEALDITLPGRAQE
                     GGSLHPVTLTLQRVVELFHGMGFEVADGPEIEDDFHNFQALNIPANHPARAMQDTFYV
                     ENGDVLRTHTSPIQIRYMLDKKEPPIRIIAPGRVYRVDSDATHSPMFHQAEGLWVEEG
                     VTFADLKAVFTDFIRRFFERDDLQVRFRPSFFPFTEPSAEIDIMGENGKWLEVGGCGM
                     VHPNVLRNVNIDPEKYTGFAFGIGLDRFAMLRYNVNDLRLFFDNDLNFLKQFVK"
     gene            complement(11510..11869)
                     /gene="rplT"
                     /locus_tag="ACFM6C_000634"
     CDS             complement(11510..11869)
                     /gene="rplT"
                     /locus_tag="ACFM6C_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000124858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HFC6158131.1"
                     /translation="MPRVKRGVTARARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQ
                     YAYRDRRQRKRQFRQLWIVRINAGTRENGLSYSKFMNGLKRASIEIDRKVLADLAVFD
                     KAAFAQLVEKAKAALAA"
     gene            complement(11882..12079)
                     /gene="rpmI"
                     /locus_tag="ACFM6C_000635"
     CDS             complement(11882..12079)
                     /gene="rpmI"
                     /locus_tag="ACFM6C_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HFC6158132.1"
                     /translation="MPKMKTKSSAKKRFKVLGNGGVKRAHAFKRHILTKKTTKNKRQL
                     RGTSMVNDRDLASVAKMLPYA"
     gene            complement(12226..12747)
                     /gene="infC"
                     /locus_tag="ACFM6C_000636"
     CDS             complement(12226..12747)
                     /gene="infC"
                     /locus_tag="ACFM6C_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HFC6158133.1"
                     /translation="MIAQEREARINGEITAKEVRLISESGEQLGVVSVREALAMAEGQ
                     DVDLVEISPTAKPPVCKLMDYGKYKYQQAKKRDEAKKNQKQVQIKEIKFRPGTDEGDY
                     QIKMRNINRFLADGDKVKVTLRFRGREMAHQQLGAQLLERVKEDLAEVAQIESFPKME
                     GRQMVMMIAPKKK"
     gene            complement(12765..14678)
                     /gene="thrS"
                     /locus_tag="ACFM6C_000637"
     CDS             complement(12765..14678)
                     /gene="thrS"
                     /locus_tag="ACFM6C_000637"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HFC6158134.1"
                     /translation="MLNITLPDGSVRQYESPVTVAQIAASIGAGLAKATVAGKVNGKL
                     VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVIEEGF
                     YYDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQERGEEYKLRLI
                     DDMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTKLAGAYWRGDSNNEMLQRIY
                     GTAWATKDELKAYIQRIEEAEKRDHRKLGKQLDLFHLQDEAPGMVFWHPKGWALWQVI
                     EQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKDNMFVTSSEKREYAVKPMNCP
                     GHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQI
                     VDEARAFNELLVRIYKQFGFHDVAVKLSLRPEQRAGSDEVWEKAEQGLRDALTACGVE
                     WEELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPERLNAEYVTENNDRARPVM
                     LHRAILGSLERFIGILIENHAGSFPLWLAPVQLVIMNITENQADYCREVAAKLQAAGF
                     RVELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRKAEDLGSLDLDDFIA
                     QLQQEITDALVNH"
     gene            complement(14732..14808)
                     /locus_tag="ACFM6C_000638"
     tRNA            complement(14732..14808)
                     /locus_tag="ACFM6C_000638"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14772..14774),aa:Val,seq:gac)
     gene            14987..16102
                     /gene="tgt"
                     /locus_tag="ACFM6C_000639"
     CDS             14987..16102
                     /gene="tgt"
                     /locus_tag="ACFM6C_000639"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HFC6158135.1"
                     /translation="MLKFTLHKKDGYARRGTLELNHGKIETPVFMPVGTYGSVKAMNP
                     QNLHDIKAQIILGNTYHLWLRPGLEVIEQFGGLHELIGWDKPILTDSGGFQVFSLSDM
                     RKLTEEGCTFQSPINGDKLFLSPEVSMKIQTVLNSDIVMQLDECTPGEATHSQAQKSL
                     QMSLRWAERSKKAFEDLKNPNALFGIVQGAMYEDLREESLKGLEELDFPGLAIGGLSV
                     GEPKPEMYRMLRAVGPILPEHKPHYLMGVGTPEDLVYGVAHGVDMFDCVMPTRNARNG
                     WLFTRFGDLKIKNAKHKLDKRPIDESCTCYACQNFSRSYLHHLHRVGEILGAQLNTIH
                     NLHFYQVIMAEMREAIEQGKFADWQARFHENRARGVD"
     gene            16112..17194
                     /gene="hemH"
                     /locus_tag="ACFM6C_000640"
     CDS             16112..17194
                     /gene="hemH"
                     /locus_tag="ACFM6C_000640"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HFC6158136.1"
                     /translation="MPSKAASDGILSLYPTRTIFQKPIMLPFLPEPSLSYTQQNRTAV
                     LLLNLGTPDAPTAQAVRPYLKSFLTDRRIVELPKWLWYPILHGLVLTLRPKKSAHAYE
                     KIWFKEGSPLEVYTARQAAALAERMPDLIVRHAMTYGNPSVADVLSELKAQGAGRLLV
                     IPMYPQYAASSSGAAVDKVCEQLLLQRNQMSVRTVSRFYDDTGYIDAMKNHILRYWAE
                     HGRGKKLMLSFHGVPQKHHDLGDPYPDECRHTAKLLAEALELTEDQYVVSFQSQFGRA
                     KWVTPSTQDLFGKLPKQGVTELDVFCPGFLADCLETMEEIALMGREQFYEAGGKSYRY
                     IPCLNDNPDWIDALVALAEENLGGWR"
     gene            17386..17787
                     /locus_tag="ACFM6C_000641"
     CDS             17386..17787
                     /locus_tag="ACFM6C_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HFC6158137.1"
                     /translation="MNTTRLPTALVLGCLCAAASAADNNIMTKGQKVYESNCVACHGK
                     KGEGRGTMFPPLYRSDFIMKKPQVLLHSMVKGINGTIKVNGKTYNGFMPATAISDADI
                     AAVATYIMNAFDNGGGSVTEKDVKQAKGKKN"
     gene            complement(17850..18140)
                     /locus_tag="ACFM6C_000642"
     CDS             complement(17850..18140)
                     /locus_tag="ACFM6C_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003696797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158138.1"
                     /translation="MAKYFTETDIGIREHFDFFGEFVVSPAARSGDLALTYGLRLEAG
                     EEGLSLAELFDKRSDSQEPVEGGRIDIGGFMLTAKEVDGDGNIGSMGLKVPR"
BASE COUNT         4503 a         4662 c         4346 g         4640 t
ORIGIN      
        1 gaaacccaac gtaccggatt cccgctttcg cgggaatgac gaagtgggcg ggaatccgga
       61 tttatccgtt ccgacagtgt ttgcaaataa aagaaaaccc aaccgtcccg attcccggca
      121 gggctgtttt acggattttg cagcgagggc gcggggcggt cttgcgcctg tttggtttgc
      181 agggtcgtca gttttttcgt cagcagattc agaatcacgc cgtaggcggg caggaaaaac
      241 agaccgcaga cggtgagttt gaacaggtaa tcgacaaaag cgatgccctg ccagtttgcc
      301 gccataaatt catcgctgct tgcatagaag gcaacggcga aaaataccaa cgtatccaag
      361 gcgttgccga tgacggttga tgcggttggg gcaatccacc acgctttcag acggcgtaat
      421 ttgttgaata caaaaatatc aaggatttgt ccgagcgcat aggcggcaaa gctggctaag
      481 gcgatgcgtc cgacaaaggt gttgaattcg gacagcgcgc ccaagcctgt ccaactgccg
      541 ttgtggaaca aaacggaaaa gacgtaggaa agcaaaaggg cggggaacat cacccaaaag
      601 ataatccgcc gtgccaagtg cgaaccgaaa atgcggacgg tcaggtcggt ggcaaggaag
      661 atgaagggaa aggaaaatgc gccccaagtg gtgtggatgc cgaaaatttg gaaggggaac
      721 tgcaccagat agttgctggc ggcgatgatg aggatatgaa aaagcaccag ccagaagagt
      781 gccttctgtt gctgtgcgtc ggtaaatgcg tacataaaaa aacctttcgg aaaggcgttc
      841 agacggcata tcgtatcgaa ggaatgccgt ctgaaatatg ggaaggatgg tttattgtgc
      901 gtcgtgctca aacaggcgtt tacgcgccaa tgcttcaaac tcggtgcctg ctttgccgta
      961 attggcgaaa ggatgaatgg cgatgccgcc gcgcggtgtg aactcgccga atacttcgat
     1021 gtatttcgga tccatcaggg caatgaggtc tttcatgatg atgttgacgc agtcttcatg
     1081 aaaatcgccg tggttgcgga agctgaagag gtagagtttc agggatttgc tttccaccat
     1141 tttgatgtgc ggaatgtagc ggatgacgat ggtggcgaag tcgggctgcc cggtcatggg
     1201 gcagaggctg gtgaactctg ggcagacgaa tttgacgaaa tagtcgttgt cgggatgttt
     1261 gttgtcgaac gcttccaaaa tttcgggcgc gtattcggcc ggatattggg ttttttgatt
     1321 acccaaaagc gagatgcctt gcagctcttc ggtattgcgg gacatagggt ttccttagtt
     1381 ttttagtgtg ggaggttttc gaaccacggg gcggcgattg taatataagc ggcggtatct
     1441 gtgtagtttt cttcagacgg catggtttgg acggcggcgt tttccgtgtc atatatagtg
     1501 gatgaacaaa aaccagtacg gcgttgcctc gccttagctc aacgagaacg attctctaag
     1561 gtgctgaagc accaagtgaa tcggttccgt actatttgta ctgtctgcgg cttcgccgcc
     1621 ttgtcctgat ttttgttaat ccactatata aacgaaatat attttcagtt ttgccgcctg
     1681 aagcgttgtt ttttgaatat tgcatctaaa atactgactt gattgcgtta ttgcgcggat
     1741 atagaatctg cttcctattg aaagaacatt gtttatatga aatcaggaaa ttcggaaccc
     1801 aatcttatgg atacgcacgc ggacgaaaca aaacttcaaa acacgcaagc caaacgcaaa
     1861 cgccgcctga cggcattgac gctgctgttc gcgcttgccg ccgcagccgc cgggtcggcg
     1921 ttttttttat ggtggcagca cgaagaggaa acggaagacg cttatgttgc cggacgcgtg
     1981 gttcaggtta cgccgcaaaa gggcggtacg gtacggaagg ttttgcacga cgatacggat
     2041 gccgtgaaaa aaggcgacgt gctggcggta ttggacgacg ataatgatgt gctggcttac
     2101 gagcgggcaa aaaacgagct ggttcaggcg gtgcggcaaa accgccggca aaatgccgcc
     2161 acttcgcagg cgggggcgca ggttgccttg cgccgggcgg atttggcacg cacgcaggat
     2221 gatttgcgcc gccggtctgc tttggcggaa tcgggcgcgg tgtccgccga agagctggca
     2281 cacgcccgtg cggcagtgtc tcaggcgcag gcggcggtca aagcggcttt ggcggaagaa
     2341 tcttcggcac gcgcggcttt gggcggtcag gtttctttgc gcgaacagcc ggcggttcag
     2401 acggcaatcg gcaggttgaa agatgcgtgg ttgaaccttc agcggacgca aatccgcgcg
     2461 ccggcggacg gtcaggtggc gaagcgttcg gtgcaggtcg ggcagcaggt ggcggcaggc
     2521 gcgccgctga tggcggtggt gccgctgtcg gatgtgtggg tggatgctaa ttttaaagag
     2581 acgcagttgc ggcatatgaa aatcggacag cctgccgagc tggtgtccga tttgtacggc
     2641 aaacaaattg tttatcgcgg cagggtggca ggtttttcgg caggtacggg cagcgcgttt
     2701 tcgctgattc cggcgcaaaa cgcaacgggc aactggatta aagtggtgca gcgcgtcccc
     2761 gtccgtatcg tgctgaaccg cgaagatgtg gacaggcatc cgttgcgtat cggtttgtcg
     2821 atgacggtta aagtggatac ttccgccgca ggcgcgcctg tttcaaaaac gccgggtgcg
     2881 gcattgccgg aaatggaaag taccgactgg tcggaagtcg atcggacggt cgatgaaatc
     2941 ctcgggcaat ccgcgccctg atgccgtctg aaacggagga cacaatggat tatccaccgc
     3001 ttaagggtgc ggcattggcg tgggttacgc tgtctttggg gcttgccgta tttatggaag
     3061 ttttagatac gactatcgcc aacgtcgccg tccccgtcat cgccggcaac ctcggtgcgg
     3121 caaccactca ggggacgtgg gtcatcactt ccttttctgt ggcaaacgcc gtttccgtgc
     3181 cgctgacggg ctttttggca aaacgcatcg gcgaggtcaa attgtttacc gccgccgctg
     3241 tcggtttcgt catcacatcg tggctgtgcg gtattgcccc caaccttcag tcgctggttg
     3301 ttttccgcat cttgcagggc tttatcgccg ggccgctgat tcccttgtcg caaagcctgt
     3361 taatggcatc ctatccgccc gcaaaacgga cgctggcact ggcattgtgg gcaatgaccg
     3421 tcgttgttgc ccctgttctc gggccgatac tcggcggctg gatttccgga aactggcatt
     3481 ggggttggat tttcttcatt aatatcccta tcggtatcat atcggcatgg ataacctgga
     3541 aacatttgaa atatcgggaa acggaaaccg ttaagatgcc gaccgactat gtcgggctta
     3601 cattgatggt agtcggtatc ggcgcgttac agatgatgtt ggacaggggt aaggaactcg
     3661 actggttcgc ctctggagaa atcattacct tgggcgtagt cgcactggtg tgcttgtcgt
     3721 attttattgt ttgggaattg ggagaaaaat atccgattgt cgatttatcg ctgtttaaag
     3781 atcggaattt taccgtcggc gtcattgcca cctcgttggg ttttatggtg tatatgggga
     3841 cgctgaccct gctgccgtta gtgttgcaga ccaacctggg ctatacctcc acgtgggcgg
     3901 ggcttgccgc cgcgcccgtc ggcatcctgc ccgtcttcct gtctccgtta atcggcaggt
     3961 tcggcaataa aatcgatatg cgcctgctcg taaccgccag cttcctgacc tttgccttca
     4021 ctttctattg gcgcaccgat ttttatgccg acatggatat cggcaacgtc atctggccgc
     4081 agttttggca gggagtaggc gttgccatgt tcttcctgcc gctgaccacc atcaccttgt
     4141 cgcacatgaa gggcggacag attgccgccg ccggcagcct gtcgaatttc ctgcgcgtgc
     4201 tgatgggcgg tgtcggcgta tccgtcgtca gtaccctgtg ggaacggcgt gaagcgttgc
     4261 accatacacg ctttgccgaa cacatcacgc cctattccgc aacattgcac gaaacggccg
     4321 ctcatttgtc ccagcacggc gtttccgaca ttcaaaccct aggcatcatc aacaatacca
     4381 ttacccagca gggttttatt atcggctcga acgaaatctt tatggcgggc agcttgttat
     4441 tcattatcat gatacccgtc atatggctgg caaaaccgcc gttccacaac ggcggcggcg
     4501 gtggacattg agggatttga aaacttgaaa tgccgtctga aaatactgga aatatgttcg
     4561 gacggcattt tgaatgcagc agttcccgaa atccgctata atcgcgcccc atctgtttcg
     4621 cacctgcaaa cgttccgcag atgcgacaat cggaaggatt atccgcgtaa aacagccgtt
     4681 tttctctaaa acacttgaac taacactgtt tttcgtggta taaatcgcgt tttactattt
     4741 tagaagtttg gagactgatt atggcacgag tttgcaaagt gaccggcaaa cgcccgatgt
     4801 ccggcaacaa cgtatcgcac gccaacaaca aaaccaaacg ccgttttttg cccaacttgc
     4861 aatcacgtcg tttttgggta gaaagtgaaa accgctgggt tcgcctgcgc gtttctaacg
     4921 ctgcattgcg taccatcgac aaagtaggca ttgatgtcgt attggctgat ttgcgtgctc
     4981 gcggtgaagc ttaatttaaa cccttagtta aggattactg caatgcgcga taaaatcaaa
     5041 ctggaatcca gtgcaggtac tggtcacttc tacaccacta ccaaaaataa acgcactatg
     5101 cccggcaaac tggaaattaa aaaattcgat ccggttgccc gcaaacacgt agtgtacaaa
     5161 gaaaccaaac tgaaataatt tcagtttgaa agcaaagcct ccgactgttc ggaggctttt
     5221 ttatttttat cgtgtttctt ttccgcttga aacatctgcc gtatgcgaat ctgctgcaaa
     5281 ccgtctgcca aggatagaga acgattctct aaggtgctga agcaccaagt gaatcggttc
     5341 cgtactattt gtactgtctg cagcttcgtc gccttgtcct gatttttgtt aatccactat
     5401 aattattttt tagcgtgtaa aacaaaaccg gctgcatacc tgcaaccggc ctcaaatcag
     5461 cacaattcct tatccaaatc cgccaacagc tctttcagac cgtctccgat ttcctgaagc
     5521 gtaaccggac ggttgccgtc cgaacccgac tccgcacctt ctgcatacgg tgcaaacgtg
     5581 ctctgcaatt tcaacagttt caccacatcc aaacgggtgt agcgttcgcc gccgtaaccg
     5641 acaaccacac cgtgatcatg ctgccattgc gcaaaaccat aggggctgat ttgcaacagt
     5701 ccgcacaact cgtccagcgt gaaatagcgt tttacgggaa ccttcaaatc aacgttgttt
     5761 gtcatagtag tgttccacca tgcttttgag tttctggctg gcatggaaag ttaccacgcg
     5821 gcgggcggta atcggcactt cctcgccggt tttaggatta cgacccgggc gttgcggctt
     5881 gtcgcgcaac tggaaatttc cgaaaccgga aattttgatt tcttcgccgc ttgccaaagt
     5941 gctgcggatt tcttcaaaaa agagttcgac gatttctttg gcatcgtttt tggtgacgtt
     6001 gctgactttg tctaccaaaa tatcggccag ttctgcttta gtgagagtca tatgattacc
     6061 ttctgttgta acagttgtgg attattacca atttttattt aaaattcaag cgaatattta
     6121 ttttttaact gcgaagccgc gcccctgccg ccgttgccgc gccaatcagt tttccgataa
     6181 gcggctcgac tgcctcatcc gtcagcgtgt tttccatatc ctgcaaaatc actttgaccg
     6241 ccacgctctt catcccttcg ggcagtcccg tgccgcgata cacgtcaaac acgctgattt
     6301 cctgtaccaa cttgtttgcc gcgcctttca agacaagcag caaatcatca tggctcatag
     6361 cttccggcat cacaaacgcc aaatcgcggc gcaccggctg gaatttcgat acgacccgat
     6421 agcgcgtttt cccgcattcc aacacggccg ccatatcgat ttcaaatacc agcggcgctt
     6481 gcggcaggtc gtatttttgc agccatttcg gatgcagttc gccgacaaag ccgatgactt
     6541 tgccgtctga aacgatattg gcggcacgtc cgggatgcag ggcgggatgt ccggttttaa
     6601 cgaactcgac tgctttgttt ttcaacagat tttccacgtc cgccttgatg tcgtaaaaat
     6661 ccgcattgcg cgttttcccg ccccattgtt ccggcatgac cgcgccgtac cacaatccgc
     6721 cgatgcgttc gttttggaca aactggccgt ctgaaccttt gctgaacacg cgggcgattt
     6781 caaacacgca cacgcggttt tgtttgcggt tcagattgtt ttgcagaatt tccaccaagc
     6841 cgccgatgag cgtggaacgc atcacggcat actgcgccgc cagcgggttt tgcaggcgga
     6901 tggggtcggc gttggcggca aaatcttgtt cccactgctc gtcaacgaag gcatagctga
     6961 ccacttcgcg gtaaccgcga gccgccattt cgttgtaaac ggcaaaacgc gggcggcgtg
     7021 tttcgggcag ttccagcatt ttcagacggc ctgacgtgta atcgtcgggg atgttttcat
     7081 agccgtaaac gcgtccgatt tcttcaatca aatcagcctc aatttcgatg tcaaaacgga
     7141 agctcggcgc ggtaacgcgg aagccttccg ccgttttctc gggctgcagg cccaagtgtt
     7201 gcaaaatggt ttccacctgt tcggcaggaa tgtccacgcc caacacggtt ttcagacggt
     7261 ccaaacgcaa tccaacctgc ttcgcttcag gcaattcgcc ttgcgcttcc accatctcgc
     7321 ctgccgcacc accgcaaatc tgcaacacca attcggtagc acgttcaatg gcatccgcct
     7381 gcaaacggta atccacgccg cgctcgaagc ggaacgacga atccgaaccg aaaccgtatt
     7441 ggcgcgattt gccggcgatg atttcgggcg caaaccaagc cgcttccagc acgatatttt
     7501 gcgtgccgtc tgaaaccgcg ctcgccgcgc cgcccattaa gcccgccaaa ctcaacacgc
     7561 ctttttcgtc cgccacgacc agcgtgtttt cagacaggga aacggttttc tcgttcaggc
     7621 attccagcgt ttccccttcg cgcgcgcggc ggatgtgcag gctgccggaa agtttgtcgg
     7681 catcaaaaac gtgcatcggc tgaccgattt ccagcatcac acaattgccg atgtccacca
     7741 gcgcggaaat actgcggatg ccgctgcgct ccaaacgttg tttcatccaa tcgggagtag
     7801 ccgctttcgc attgacattt tcaataacgc ggctgataaa acggccgcaa tcggcaggcg
     7861 cgttaatctg cacgggctgt tttcgactgc ccgtgatcgg cgcggtatgg atttcgggct
     7921 gcctgaacgc gcaccccgtc aatgcggaca cttcgcgcgc aatgcctttg atgctcaagc
     7981 agtcggcgcg gttaggcgta attttcaacg taaacagcgt atcgtccaaa tccaagtatt
     8041 cgcggatatt ggtaccgacg ggcgcatctt caggcagaat gtgcaggccg ttcacaccgt
     8101 cgtcgggcag accgagttcg tcggtggaac acaacatccc gtccgacacc acgccgcgca
     8161 ttttggtcgg cttgattttg aaattacccg gcaaaacggc acccggcagc gaacacggca
     8221 ctttgatgcc cgctttcaca ttcggcgcac cgcacacaat ctgcaccaac ccgcccgtac
     8281 ccgcatcaac tcgggtaacg ttcaaacggt ctgcatccgg atgtttttca acggatttca
     8341 cttcggcaat caccacgccc gcaaacgcag gcgcggcagt ttcggcctct tccacttcca
     8401 agccggacat cgttaacaga tgttccagct tatcggagga aagttcggta tcggcttggg
     8461 ttttcagcca tgagtaggag aattgcatgt tatgttctca attaactaat taactttaga
     8521 ttttcaagag ctagctaaac ctttttgaat ggctaagtcc ctattaatta cttctacaga
     8581 aatgttccat aaagaaatca accgcaaagt atctttctta ttaaattctt gctttattaa
     8641 ttcattcaat tgcccaagat aattaagcgg cacatccggg ataaccagta ataatttgat
     8701 ttctatgcta ccccattgca aatttgaaaa agcactaggc ataattgttt ctttgatatc
     8761 ttctctgcct aatattccca aaatttcaac atttaatgca ttacaccatt tttgataaat
     8821 ctctgaaata tattcatcaa aacgctcagg agatctttct tgatttggaa tactttgttt
     8881 tgcctcaaca aataacaaat tatcttcttg cagatagata aactctactg tcttaatacc
     8941 ttcttgcctt ctcttccgga tatatggttc tatataaaac aggttatttt ttactagatt
     9001 aaaagttata cctgattcag tgagatttat tatttcactc ataaaaacct aaccaatcca
     9061 tgctgtttcc ggagataaaa cacctatttc ttctctgaac aatcgaatag actcaccaat
     9121 aatttcatta tccggcatgc tattttgtaa attttcctgc acccaagtag tctgttcctt
     9181 ttcttttcca ggcataaaaa caggaatact ttcactatgc tttctagcta ataaacacag
     9241 cttcttgata acaaaatatg aatgcgtact cataaaaatc tgtattccca atttggattt
     9301 agataaggaa aacagaattt ctagaaattg attaattgct ttaggatgta gattagcttc
     9361 tggctcatca ataaataaga ttgatccagg actcaaaaac cgatttccta atagagtgtc
     9421 taatatccca atctttttta ccccctctgc tgtagaattg atagagaaag tttgtctatc
     9481 tttttcatat acccatgcct tctttttatc attgtagcta acataaccgc caaacaatgc
     9541 ttctagatcc tttctagctt ccgctgcctc agggtaattc ctcccttttg ttggtttaat
     9601 atccaatgct tttaccaaat caatgtaagt agcatcaaaa ccaaatctct tttcttcctc
     9661 tgatttttta attacatcaa atagtgatag aacttctttg ggtggtaaaa aaatagagtt
     9721 agcgtttatt ctgggagaaa gttcgtatag ctccggttta attagctttt tggtagttct
     9781 accaaaagaa aacaaaactg aagaactatc ttctaaagtc atacttaact taagaggccg
     9841 ttcgtttgga ttttcttttc ctcttgtaac taaatcacca atttcctcta cttggaacgt
     9901 ccaatatagc ttatctcgca attcctcaga aaaatcacga atattctttc ctttatgagc
     9961 ttcctcatgg ctttttaaaa cactatataa tgcctttaaa ataaaagttt tccctttgct
    10021 attttctgca ataattaaat ttattttccc taaattatca gccttcaata agctaatcgg
    10081 cccgaaattt tcaagccaaa atgatttaat catataatcc ccctaatata tatcaacaat
    10141 atttgtacaa gacacattgt gaaaagacag caaccacagc accatagtaa acgcatagca
    10201 ggcggataat ggagcgacat agcgtttcat gatttagctt tctgaggtag gcacaggctg
    10261 cttttttcat ttttaggcag cctacacaat cattttacaa actgcttcaa aaaattcaaa
    10321 tcgttatcaa aaaacaagcg caaatcgttc acgttgtaac gcagcatcgc gaaacggtcg
    10381 agaccgatac cgaaagcgaa accggtgtat ttttcgggat cgatattcac atttctcaac
    10441 acgttgggat gcaccatacc gcagccgccg acttccagcc atttgccgtt ttcgcccata
    10501 atgtcgattt cggcagacgg ttcggtgaac gggaagaaag acgggcggaa acgtacttgc
    10561 aaatcatcgc gttcaaagaa gcgacggata aaatccgtga acactgcttt taagtcggca
    10621 aaagttacgc cctcttctac ccacaaacct tccgcctgat ggaacatagg cgagtgcgtg
    10681 gcatcgctgt ccacacggta aacgcggccg ggggcgataa tgcggatggg cggctctttt
    10741 ttatcgagca tatagcggat ttgaatcggg gaagtgtgcg tacgcaaaac atcaccgttt
    10801 tcaacgtaaa acgtatcctg catcgcacgg gcaggatggt ttgcagggat gttcagggct
    10861 tggaaattgt gaaaatcgtc ttcgatttca ggcccgtccg ccacttcgaa acccattccg
    10921 tgaaagagtt cgaccacacg ttgcaaggtc agggttacgg gatgcaggct accgccttcc
    10981 tgagcgcgtc cgggcagggt aatgtcgagg gcttcggcgg caagtcgggc ttgcagcttg
    11041 gcttcgttga gggcatcgcg tttggcatta aaagccgtct gaaaccggtt tttgcattca
    11101 ttgatatgcg cacctatggt tttgcgctct tcaggcgaca tttgccccaa agttttcaga
    11161 agtccggtca actcgccggt tttgccaaga taacgggctt tgatttgttc tagagcgttg
    11221 aagtcttgcg cagcttctac tgcggcaatg ccttctgcaa cgatgcggtt tacattttcc
    11281 ataatatcaa gtctgtcaat taatgatatg ccacctgaaa caacgaggcc gcctgtatag
    11341 cctgacatat cagactcttc agacgacctt attttcttca cggtcaatcc actatatttt
    11401 aacgcaaatt tatttaaaaa aatagacttt aaagaaagaa aatcaatcac atagaatttc
    11461 tgcaaacaaa gaaaaaagga agccgcagct tccttttcaa ttttttggat taagcagcca
    11521 aagcagcttt ggctttttca accaattgtg caaaagcggc tttatcgaac acggccaaat
    11581 cagccaatac tttgcggtcg atttcaatag aggcgcgttt cagaccgttc ataaatttgc
    11641 tgtaagacaa cccgttttca cgcgtacctg cattgatacg gacaatccac aattgacgga
    11701 attggcgttt gcgttggcgg cggtcacggt atgcgtattg accggctttc attaccgcct
    11761 gcttggcaac gcggtaaacg tttttacgac gaccgcgata gcctttggct aacgcgaaga
    11821 ttttttggtg acgggcacgg gcggtaacac cgcgttttac gcgtggcata ttctaaactc
    11881 cttaagcgta gggtaacatt ttagcaacag aagccaaatc gcgatcattt accatagagg
    11941 taccgcgcaa ttggcgtttg tttttggtgg tctttttagt caagatgtgg cgtttgaacg
    12001 catgagcgcg tttcacaccg ccgttaccca gtactttaaa gcgttttttc gcgctagact
    12061 tggttttcat tttaggcatg ggaaaactcc attcgttatc ggataaggca ttagggggtt
    12121 ttaaaacatc ggtttcaaac acttgaaccc acaatgccac ggttttttgc cgcaattaaa
    12181 aacttactcc gaagcgacaa tcggagtaag cggagaatta tagctttatt ttttcttcgg
    12241 cgcaatcatc atcaccattt ggcgaccttc cattttggga aaggactcga tttgcgccac
    12301 ttcagccaaa tcttctttta cacgttccaa aagttgcgcg ccgagttgct ggtgagccat
    12361 ttcacggccg cggaaacgca atgtcacttt gactttatcg ccgtcggcaa ggaagcggtt
    12421 gatgttgcgc atcttgattt gataatcgcc ctcatctgta cccggacgga atttgatttc
    12481 cttgatttgt acctgctttt gatttttctt ggcttcgtcg cgtttcttgg cctgctggta
    12541 tttgtattta ccgtaatcca tcagtttgca cacaggcggt ttagcagttg gggaaatctc
    12601 taccaaatcg acatcctgcc cttcggccat agccaaagct tcacgaactg aaacgacacc
    12661 aagctgttcg cctgactcac tgattaaacg cacttctttg gcggtaattt cgccgttgat
    12721 tcgtgcttcg cgttcttgag cgatgatgaa tactcctata aaaattaatg attgacgagg
    12781 gcatcagtga tttcttgctg caattgcgca atgaaatcat ccaaatccaa agaacccaaa
    12841 tcttctgctt tgcggcgtac cgccactttg ttttcctgct tctccttatc gccgacaacg
    12901 atttgataag ggaaacggta ttggctgttg tcgcggattt tgtaaccgat tttttcgtta
    12961 cgcaaatcca gctctacacg gaagccagcg gcttgcaatt tagcagccac ttcccgacaa
    13021 taatctgcct gattttcggt aatattcata attaccaatt gaaccggagc cagccataac
    13081 gggaaagagc ctgcatggtt ctcaatcaga atgccgataa accgttccaa agaacctaaa
    13141 atggcgcgat gcaacataac aggtcgcgca cggtcgttgt tttcggttac atattcggca
    13201 ttcaaacgct ctggcaatac aaagtccaac tgcagggtac cgcactgcca agagcgaccc
    13261 aaggcatctt tgacatgata ttcaatctta ggaccataga atgcgccttc gccaggcaac
    13321 tcttcccact ctacgccgca agcggtcaag gcatcacgca gcccttgttc ggctttttcc
    13381 caaacttcgt cagaacctgc acgttgttca gggcggaggg acaacttcac ggcaacatca
    13441 tggaagccga attgtttgta aatgcgaacc agcaattcat tgaatgcacg tgcctcatca
    13501 acgatttgat cttcggtaca gaagatgtgc gcatcatcct gtacaaaacc gcgaacacgc
    13561 atcagaccat gcaatgcacc gcttggttca ttacggtggc aagaaccgaa ctcagccaaa
    13621 cgcattggca aatcgcgata tgagcgcaag ccgttattaa aaatttgcac atgacccgga
    13681 cagttcatcg gtttcaccgc gtattcgcgt ttttccgaac tggttacgaa catattgtct
    13741 ttgtagttgt cccaatggcc ggatttttcc caaaaggttt tatccatgat ttgaggcgtt
    13801 ttgacctctt tataaccggc ggcgttcagt tctttacgca tatgctgttc aatcacttgc
    13861 cacaaagccc agcctttagg atgccaaaac accatgcccg gcgcttcgtc ttgcagatgg
    13921 aacagatcca attgcttgcc aagcttgcgg tggtcgcgct tttcggcttc ttcgatacgt
    13981 tgaatatagg ctttcaactc gtcttttgtc gcccaagccg taccgtatat gcgttgcagc
    14041 atttcattgt tgctgtcgcc gcgccagtat gcgcccgcca acttggtcag tttgaagttt
    14101 ttcaggaaac gggtattcgg aacgtgcggt ccgcggcaca tatcgacata ttcctgatga
    14161 tgatacatcc ccatcgcttc cacttcgggc atatcgtcaa tcaggcgcag tttgtattct
    14221 tcgccgcgct cttgaaaaat tttaatcgcc tccgcacgcg gagtcatgat tttgaccaca
    14281 tcatagtctt gggcaatcaa ttctttcata cgcgcctcaa tagcggcaac atcttccggt
    14341 gtaaacggtt tttccgtggc gatgtcgtaa taaaagccct cttcaatgac ggggccgata
    14401 accatttttg cattaggata gagttgcttg acggcatgcc cgacaagatg cgcgcaggaa
    14461 tggcggatga tttcgatgcc ttcctgatct ttcggagtaa tgatttgaac agcagaatct
    14521 tcaacaatcg ggtcgcacgc atcgaccaat ttgccgttta ccttgcctgc caccgtcgcc
    14581 ttcgccaaac cggcaccgat agacgcagca atttgagcca cggtaacggg ggattcgtat
    14641 tggcggactg agccgtccgg caaggtaata ttcaacatca aaaagctcca aaacattaaa
    14701 aaataacggc ataaatgccg ttatgggaat ttggtaggca cgattggatt cgaaccaacg
    14761 acccccacca tgtcaaggtg gtgctctaac caactgagct acgtgccttc aaagaatttt
    14821 tgcattttat cgggtcgttt taatttttgc aagagatatg tgcatttctt tatgcaacat
    14881 tgcggcaaga tttggggatg ccgtctgaaa aaccgtggga aatcatttat aatgccgtct
    14941 tttaaaatat atttcgaccc ctgtcgccca actgacattc aatcttatgc ttaaatttac
    15001 tttacacaaa aaagacggat acgcccgacg cggcacgctg gagttgaacc acggcaaaat
    15061 cgaaacaccg gtatttatgc cggtcggcac ttacggttcg gtcaaagcga tgaacccgca
    15121 aaacctgcat gacatcaaag cacaaatcat cttaggcaac acttaccatc tgtggctgcg
    15181 cccgggtttg gaagtcatcg aacaattcgg cggcctgcac gaacttatcg gttgggataa
    15241 gccgattttg accgactcag gcggtttcca agtattttcg ttgtccgaca tgcgtaagct
    15301 gactgaagaa ggctgtacat tccaaagccc gatcaacggc gacaaactgt tcctctcgcc
    15361 cgaagtgtcg atgaaaatcc aaaccgtatt gaattccgac atcgtgatgc agctggacga
    15421 atgcaccccg ggcgaagcaa cgcacagcca agcgcaaaaa tcgctgcaaa tgagcttgcg
    15481 ctgggcagaa cgaagcaaaa aggcttttga ggacctcaaa aacccgaatg cgctgtttgg
    15541 catcgtacaa ggcgcgatgt atgaagattt gcgcgaagaa tcgctgaaag gcttggaaga
    15601 gctcgacttc cctggcttgg ccatcggcgg cttgtccgtt ggcgaaccca agcccgaaat
    15661 gtaccgtatg ttgcgcgctg tcggccctat cctgccggaa cacaaacctc attatttaat
    15721 gggtgtcggc acgcctgaag atttggtgta cggcgtggca cacggcgtgg atatgttcga
    15781 ctgcgtcatg cctacccgca atgcgcgtaa cggctggctg tttacccgtt ttggcgattt
    15841 gaagatcaaa aacgccaaac acaaactcga caagcgtccg attgatgaaa gctgcacctg
    15901 ctacgcctgt cagaatttca gccgctccta cctgcaccat ctgcaccgtg tcggcgaaat
    15961 cttgggtgca caactcaaca ccatccacaa cctgcacttc taccaagtca tcatggcaga
    16021 aatgcgcgaa gccatagaac aaggcaaatt tgccgactgg caggcgcgat tccacgaaaa
    16081 ccgcgcacgc ggtgtggact gactcccggc aatgccgtct aaagccgctt cagacggcat
    16141 tttgtcgctt taccctaccc gcactatttt tcagaaaccg atcatgcttc cattccttcc
    16201 agaaccctcc ctttcctata cgcaacaaaa ccgtaccgcc gttttgctgt tgaacctcgg
    16261 cacacccgac gcgccgaccg cgcaggcggt acgaccttat ctgaagtcct ttctgaccga
    16321 ccggcgcatc gtcgaactgc ccaaatggct gtggtatccc attctgcatg gtctggtact
    16381 gacgttgcgc cccaaaaaaa gcgcgcacgc ctatgaaaaa atctggttta aggaaggttc
    16441 gcccctagaa gtttacaccg cacgccaagc tgccgcgctt gccgaacgta tgcccgacct
    16501 catcgtccgc cacgctatga cctacggcaa tccttcggtg gcagacgtat tgtcggaact
    16561 gaaggcgcaa ggcgcgggca gactgctggt catcccgatg tacccgcaat atgccgcttc
    16621 cagcagcgga gcggcggtag ataaagtgtg cgaacaatta ctgctgcaac ggaaccaaat
    16681 gagcgtccgc accgtttcgc gcttttatga cgataccggc tacattgatg cgatgaaaaa
    16741 ccacatcctc cgatattggg cggaacacgg gcgcgggaaa aaactgatgt tgagttttca
    16801 cggcgtaccg cagaagcacc acgacctcgg cgacccctat cccgacgagt gccgccacac
    16861 cgccaaactg cttgccgaag cactggaact gaccgaagac caatatgtcg tatcgttcca
    16921 aagccaattc ggcagggcaa aatgggttac accgagcacg caggatttgt tcggcaaact
    16981 gcccaaacag ggggtaaccg agctggacgt attctgcccg ggctttttgg cagactgttt
    17041 ggaaaccatg gaagaaatcg ccctgatggg gcgcgaacag ttttacgaag caggcggcaa
    17101 aagctaccgc tatatcccct gcctcaacga caaccccgac tggatagacg cactcgtcgc
    17161 acttgccgaa gaaaaccttg gtggctggcg ttgaaactgt ttgacccatg tctaaaatgc
    17221 cgtctgaacg ccgtgttcag acggcatttt cccgctactt tagcgtatga tggcatctat
    17281 gccggacaac aacatcaagt gcaaccttac taccgattcg gcaagaaaat ctttcacccg
    17341 ctacgcaaaa tcaacaacaa ggtttcaaac attaaggaaa caccaatgaa cacaacccga
    17401 ctgccgaccg ccctcgtctt gggctgcctc tgcgccgccg cttctgccgc cgacaacaat
    17461 atcatgacaa aagggcaaaa agtgtacgaa tccaactgcg tcgcctgcca cggcaaaaag
    17521 ggcgaaggcc gcggaaccat gtttccgccg ctctaccgct ccgacttcat catgaaaaaa
    17581 ccgcaggtgc tgctgcacag catggtcaaa ggcatcaacg gtacaatcaa agtcaacggc
    17641 aaaacctaca acggattcat gcccgccact gccatcagcg atgcggacat tgccgccgtc
    17701 gccacttata tcatgaacgc ctttgacaac ggcggcggaa gcgttaccga aaaagacgta
    17761 aaacaggcaa aaggcaaaaa aaactaaaca gacaaaatgc cgtctgaaac cggcaatccg
    17821 gcttcagacg gcattcaaat caaacctttc taacgcggta ctttcagccc catagacccg
    17881 atattgccgt ccccgtcaac ctccttcgcg gtcagcataa agccgccgat gtcaatacgg
    17941 ccgccctcga ccggctcctg actatcggaa cgcttatcga aaagctcggc aaggctcaaa
    18001 ccctcttcgc ccgcttccag cctcaaaccg taagtaagtg ccaaatcacc cgaacgtgct
    18061 gccggcgaaa cgacaaactc gccgaagaaa tcaaaatgct cacggatgcc gatatccgtc
    18121 tcggtaaagt atttcgccat tttatagtga a
//
LOCUS       DAXHPV010000026        17831 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.026, whole genome shotgun sequence.
ACCESSION   DAXHPV010000026 DAXHPV010000000
VERSION     DAXHPV010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 17831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17831
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.026"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..380)
                     /locus_tag="ACFM6C_000643"
     CDS             complement(<1..380)
                     /locus_tag="ACFM6C_000643"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158139.1"
                     /translation="MSFGYLIATSQPCELLTKSRGETFSLIMDKMDLWIYFRFCEGNI
                     YTIRKNETESCLTERGGKWLKHIYEFNRGSFIFSYVLLKKRESEENFAEIVLKSIKNN
                     KILTVKVRSGLHFDLRNIYRIEMY"
     gene            complement(438..803)
                     /locus_tag="ACFM6C_000644"
     CDS             complement(438..803)
                     /locus_tag="ACFM6C_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158140.1"
                     /translation="MEKPLLTPPFFLFEDVSLDIFQGLSELEKKIEPQDLMDDVYRAF
                     DSVGNILNFRIVEKEQKGFWVSTKIKTVVFDSADMSSDDLFLKCLQSSYKAYFETEPA
                     GLDKRQLMKTLIQKCGFSC"
     gene            complement(785..1330)
                     /locus_tag="ACFM6C_000645"
     CDS             complement(785..1330)
                     /locus_tag="ACFM6C_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158141.1"
                     /translation="MKKQITAAVMMLSMIAPAMANSMDNQIFENQVFHTRADAPMQLA
                     ELSQKEMKETERAFLPLAILGGAAIGMWTQHGFSYATTGRPASVRDVAIAGGLGAIPG
                     GVGAAGKVVSFAKYGREIKIGNNMRIAPFGNRTGHPIGKFPHYHRRVTDNTGKTLPGQ
                     GIGRHRPWESKSTDRSWKNRF"
     gene            complement(1493..1765)
                     /locus_tag="ACFM6C_000646"
     CDS             complement(1493..1765)
                     /locus_tag="ACFM6C_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158142.1"
                     /translation="MFAVIFFSTLGCILAWIRDIPKIKSKKILARSLYIIGIINVIIS
                     YVLIKNILVSVSDGGGIKYVAIYLSNLFFWTVLMYVLVKRLSKKPS"
     gene            complement(1834..2268)
                     /locus_tag="ACFM6C_000647"
     CDS             complement(1834..2268)
                     /locus_tag="ACFM6C_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158143.1"
                     /translation="MKKQITEATMMLSIIAPAMANGLDNQAFEDQVFHTRADAPMQLA
                     ELSQKEMKETEGEWIPNAVGGIMGGVGGHFSYMASAIASGSYNREAHWTAIGGGALIG
                     AMNPINGGRALINGMRGVAVGTVAGGINGYAGSTGKNTDIRR"
     gene            complement(2311..3180)
                     /locus_tag="ACFM6C_000648"
     CDS             complement(2311..3180)
                     /locus_tag="ACFM6C_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="meta-pathway of phenol degradation family
                     protein"
                     /protein_id="HFC6158144.1"
                     /translation="MKRIFLPALPAILPLSTYADLPLTIEDIMTDKGKWKLETSLTYL
                     NSENNRAELAAPVYIQTGATSFIPIPTEIQENGSNTDMLVGTLGLRYGLTGNTDIYGS
                     GSYLWHEERKLDGNGKTRNKRMSDVSLGISHTFLKDDKNPALISFLESTVYEKSRNKA
                     SSGKSWLIGATTYKAIDPIVLSLTAAYRINGSKILSDGIRYKSGNYLLLNPNISFAAN
                     DRISLTGGIQWLGRQPDRTDGKRESSRNTSTYAHFGAGFGFTKTTALNASARFNVSGQ
                     SSSELKFGVQHTF"
     gene            3344..4267
                     /locus_tag="ACFM6C_000649"
     CDS             3344..4267
                     /locus_tag="ACFM6C_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HFC6158145.1"
                     /translation="MKKRNNPLPLLNGVKPSYLVLPHEKQFYGLPLLHFLCIRFPFVG
                     ADDWRRRLNSGFVVGSDGATLDEHTLFEPGKVMFYYRETSSEDEPRIPFEEKILHIDE
                     HLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDITPLHRLDKDTAGVMLL
                     SHNPATRGAYQTMFQNKTVWKTYEALAPTRTDLPYPLDVVSRLVRGEKFFTTQEAEGE
                     PNAHTTVELIENRGEFSLYRLTPHTGKKHQLRVHMMGLGMPLLNDALYPVPSEAGSED
                     YRKPLKLLAKKIAFADPLSGRERVFCSGFCL"
     gene            complement(4345..4986)
                     /locus_tag="ACFM6C_000650"
     CDS             complement(4345..4986)
                     /locus_tag="ACFM6C_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HFC6158146.1"
                     /translation="MLKPETIHISGPAGILETIHIPSEQVPARGVAVINHPNPLQGGT
                     NTNKVIQTAAKALSKLGFHCYLPNLRGVGGSEGTHDYGRGETQDCLAVIDYARAQHPE
                     APEFALSGFSFGGYVATFAAQARIPDLLLLIGAAVCHYTGRPEPSAVPNVAKTLMIHG
                     AEDEVVEIGKALKWAEPQDLPVITIAGSTHFFHGKLIVLRDTILRFAPVCLNG"
     gene            complement(5041..5832)
                     /locus_tag="ACFM6C_000651"
     CDS             complement(5041..5832)
                     /locus_tag="ACFM6C_000651"
                     /EC_number="2.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine aminopropyltransferase"
                     /protein_id="HFC6158147.1"
                     /translation="MARHPYRRLRPAKSGFPEVGISEEGNIRSLHLGSDTVQSSMNLD
                     HPSELVLSYSRAMMGWLLFTDALPQHITQIGLGGGSFARWIDTYLPDTRQTAVDINPQ
                     VIAIARNLFELPFEGEKFEIIEADGAEYIKVFRHNTDVILVDGFDGEQIIDALVEEPF
                     FRDCRNALSSDGIFVTNWWSGDKRYQRFIERLLSVFEGRVLELPAESHGNVAVMAFQS
                     SPKEQNIDKLKKRADKLSNAYGLDFHRMLAGLKASNPNNGKHFHL"
     gene            5998..6073
                     /locus_tag="ACFM6C_000652"
     tRNA            5998..6073
                     /locus_tag="ACFM6C_000652"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6031..6033,aa:Thr,seq:tgt)
     gene            6108..6183
                     /locus_tag="ACFM6C_000653"
     tRNA            6108..6183
                     /locus_tag="ACFM6C_000653"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6141..6143,aa:Thr,seq:tgt)
     gene            6325..7116
                     /gene="panB"
                     /locus_tag="ACFM6C_000654"
     CDS             6325..7116
                     /gene="panB"
                     /locus_tag="ACFM6C_000654"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HFC6158148.1"
                     /translation="MITVNTLQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLVGDS
                     LGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAEL
                     MAAGAHMVKLEGGVWMAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQA
                     LLNDAKAHDEAGAAVVLMECVPAQLAKKVTETVSCPTIGIGAGVDCDGQVLVMHDMLG
                     IFPGKTAKFVKNFMHGQSSIQAAVRAYVAEVKAKTFPAAEHIFAD"
     gene            7106..7282
                     /locus_tag="ACFM6C_000655"
     CDS             7106..7282
                     /locus_tag="ACFM6C_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158149.1"
                     /translation="MQTEQGLLLMPSESRFRRHFVLPCAARIIGAFCRAGSPKDKDYR
                     YANHTYHSRTARLA"
     gene            7239..8075
                     /gene="panC"
                     /locus_tag="ACFM6C_000656"
     CDS             7239..8075
                     /gene="panC"
                     /locus_tag="ACFM6C_000656"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HFC6158150.1"
                     /translation="MQIIHTIRELRAWRKNAGKVAFVPTMGNLHEGHLALVREAKKRA
                     DNVVVSIFVNRLQFGQGEDFDKYPRTLQQDADKLEAEGVAVVFAPDEKELYPNVEQRY
                     NVEPPNLQNELCGKFRPGHFRGVATVVSKLFNIVAPDVACFGKKDYQQLAVIKGLTED
                     LNFDVEIVPVDTGRAEDGLALSSRNQYLSAAERDEAPRLSRELKAVAESLAQGSLDYA
                     GLERQAADHLTAAGWVVDYVEIRRADTLEVARAGDKKLVVLAAARLGTTRLIDNLEIK
                     LP"
     gene            8240..10078
                     /locus_tag="ACFM6C_000657"
     CDS             8240..10078
                     /locus_tag="ACFM6C_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158151.1"
                     /translation="MLPARFTILSVLAAALLAGQAYAAGAADAKPPKEVGKVFRKQQR
                     YSEEEIKNERARLAAVGERVNQIFTLLGGETALQKGQAGTALATYMLMLERTKSPEVA
                     ERALEMAVSLNAFEQAEMIYQKWRQIEPIPGKAQKRAGWLRNVLRERGNQHLDGLEEV
                     LAQADEGQNRRVFLLLAQAAVQQDGLAQKASKAVRRAALRYEHLPEAAVADVVFSVQG
                     REKEKAIGALQRLAKLDTEILPPTLMTLRLTARKYPEILDGFFEQTDTQNLSAVWQEM
                     EIMNLVSLHRLDDAYARLNVLLERNPNADLYIQAAILAANRKEGASVIDGYAEKAYGR
                     GTGEQRGRAAMTAAMIYADRRDYTKVRQWLKKVSAPEYLFDKGVLAAAAAVELDGGRA
                     ALRQIGRVRKLPEQQGRYFTADNLSKIQMFALSKLPDKREALRGLDKIIEKPPAGSNT
                     ELQAEALVQRSVVYDRLGKRKKMISDLERAFRLAPDNAQIMNNLGYSLLSDSKRLDEG
                     FALLQTAYQINPDDTAVNDSIGWAYYLKGDAESALPYLRYSFENDPEPEVAAHLGEVL
                     WALGERDQAVDVWTQAAHLTGDKKIWRETLKRHGIALPQPSRKPRK"
     gene            10218..10799
                     /locus_tag="ACFM6C_000658"
     CDS             10218..10799
                     /locus_tag="ACFM6C_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein LolB"
                     /protein_id="HFC6158152.1"
                     /translation="MKHTVSASVILLLTACAQLPQNNENLWQPSEHTRSFTAEGRLAV
                     KAEGKGSYANFDWTYQPPVETININTPLGSTLGQLCQDRDGALAVDGKGNVYQAESAE
                     ELSRQLVGFKLPIQYLHIWADGRRVAGAPYRILPDGILEQYGWTVGRTADSGGQVRTL
                     QLNNGNLNIRLVFTEIGMPSETETPERCAARTR"
     gene            10809..11654
                     /gene="ispE"
                     /locus_tag="ACFM6C_000659"
     CDS             10809..11654
                     /gene="ispE"
                     /locus_tag="ACFM6C_000659"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050515 - 4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HFC6158153.1"
                     /translation="MNIADGRQAFPAPAKLNLDLRITGKREDGYHNIESIFCLIDLQD
                     TVYLKPRDDGKIILHNPVGGIPQEADLSYRAASLLQKYARNPAGVEIWLDKKIPTGAG
                     LGGGSSDAATVLLVLNRWWQCGLTQRQLIDSGAALGADVPFFIFGKNAFARGIGDRLD
                     EMDIPKQWYVIVKPPVHVSTAKIFTHEGLTRNSASSIMPTFQNLQPFRNDMQAVVFKE
                     YPEVWKAYSELSRYGFALMTGSGACVFTACQDRNSAYNIYRQVSDLYEAYLAEGLSKH
                     PWLSV"
     gene            11662..11737
                     /locus_tag="ACFM6C_000660"
     tRNA            11662..11737
                     /locus_tag="ACFM6C_000660"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:11695..11697,aa:Gln,seq:ttg)
     gene            11750..11825
                     /locus_tag="ACFM6C_000661"
     tRNA            11750..11825
                     /locus_tag="ACFM6C_000661"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:11783..11785,aa:Gln,seq:ttg)
     gene            11834..11909
                     /locus_tag="ACFM6C_000662"
     tRNA            11834..11909
                     /locus_tag="ACFM6C_000662"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:11867..11869,aa:Gln,seq:ttg)
     gene            12076..13059
                     /locus_tag="ACFM6C_000663"
     CDS             12076..13059
                     /locus_tag="ACFM6C_000663"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009156 - ribonucleoside monophosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009165 - nucleotide biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HFC6158154.1"
                     /translation="MAAYDSLMVFTGNANPELAQRVVRHLDISLGNASVSKFSDGEVA
                     VELLENVRGRDVFILQPTCAPTNDNLMEILTMADALKRASAGRITTAIPYFGYARQDR
                     RPRSVRVPISAKLVANMLYSAGIDRVLTVDLHADQIQGFFDIPVDNIYATPILLNDIK
                     QQRIENLTVVSPDIGGVVRARAVAKSLNADLAIIDKRRPKANVAEVMNIIGDIQGRTC
                     LIVDDMIDTANTLCKAAVALKERGAERVLAYASHAVFSGEAVSRIASSEIDQVVVTDT
                     IPLSEAAKNCDRIRQVTIAGLLAETVRRISNEESVSYLFNEEVMTGSMLLP"
     gene            13126..13698
                     /locus_tag="ACFM6C_000664"
     CDS             13126..13698
                     /locus_tag="ACFM6C_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003755233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HFC6158155.1"
                     /translation="MTYEIQASVREAQGTGASRRLRREGQIPGILYGEGQEPVAIAVD
                     HKTVFYALEKESFHTALIKLSLNGETKDVIVRDFQMHPFRREVQHIDFQAVKADQLVR
                     IRVPLHIVNAENSQAVKLQGGRVSLLNTSVEVVALPANIPAFLDLDCAEVVAGDILHL
                     SDIKLPEGVESVSLKRNENLAVATVTGKKR"
     gene            complement(13821..14990)
                     /locus_tag="ACFM6C_000665"
     CDS             complement(13821..14990)
                     /locus_tag="ACFM6C_000665"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase family
                     protein"
                     /protein_id="HFC6158156.1"
                     /translation="MTAHKILPVLLSIILGISHATAASPAPNKPAVHAAPTFQTPETL
                     TAAHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPES
                     AWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEA
                     RRLGMKNTVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSFKFKNIEQ
                     NNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSK
                     LLNWALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAKTTEQIL
                     ETIQPIPAPVKKGQILGKIKIRQNGYTIAEKEIVALENVKKRSRWQRLWACLTGQ"
     gene            15138..16664
                     /gene="ilvA"
                     /locus_tag="ACFM6C_000666"
     CDS             15138..16664
                     /gene="ilvA"
                     /locus_tag="ACFM6C_000666"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004794 - threonine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HFC6158157.1"
                     /translation="MNTPLPYSNYLIRILTASVYDVAVETPLEPARSLSVRLKNNILL
                     KREDLQPVFSFKIRGAYNKMSKLPKDALACGVIAASAGNHAQGVALSAQRLGCRAVIV
                     MPETTPKIKVDAVKSRGGEVVLRGVSYNDAYDYAMELAEKEGLTYIAPFDDPDVIAGQ
                     GTVGMEIVSQHPDPIRAVFVPIGGGGLAAGVAAFIKQVRPEIKVIGVQTNDSCCMKQS
                     VEAGEIVHLKDVGLFSDGTAVKVVGNETFRLCKELLDEIITVDTDAVCGAVKDIFDDT
                     RSITEPAGALALAGLKAYIAREGAENQTLIAVTSGANMNFHRLRHVSERSELGEGNEG
                     IFAVTIPEERGSFLKFVNILGNRNITEFNYRYGDDEKAHIFVGLQAAGPQDLAVIGSR
                     LDEAGLPNVDLTDDEIAKIHIRYMVGGRTDKVENERLVSFEFPERPGALARFLNHMQG
                     GWNITLFHYRNHGADYGRILVGIDVPPHDAAAFDGFLESLGYSYHEETQNAAYKLFLA
                     "
     gene            complement(16721..17794)
                     /locus_tag="ACFM6C_000667"
     CDS             complement(16721..17794)
                     /locus_tag="ACFM6C_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HFC6158158.1"
                     /translation="MSITIQNLNKHFGNFHALKNINLNVPTGKLVSLLGPSGCGKTTL
                     LRIIAGLENADGGKILFDGQDVTAKHVRERKVGFVFQHYALFRHMNVFDNVAFGLTVL
                     PKSERPSKEQICTKVEELLKLVQLSHLAKSYPHQLSGGQRQRIALARALAVEPKLLLL
                     DEPFGALDAKVRKELRTWLRDIHHNLGVTSILVTHDQEEALEVSDEIVVMNHGKIEQT
                     GSAEAIYRKPENAFVTEFLGETDAFEGRIEKGFWHYNGFAWKLDAQYKWQEQTATGYI
                     RPHEWQIAAEHETPMICAEIEKVHAVGALTHILVKHGKQDVHITLAGSDAARYPIAEG
                     KELKLIPKQVYVFSQNELIEYSI"
BASE COUNT         4217 a         4122 c         4882 g         4610 t
ORIGIN      
        1 ctatacatct caatacgata aatatttctt aagtcaaaat gcaagcctga ccgtacctta
       61 actgtcaaaa ttttattatt ttttattgat tttaaaacaa tttctgcaaa attctcttcg
      121 ctttctctct tttttagaag cacataagaa aaaataaaac ttccccgatt aaattcataa
      181 atatgtttca accatttgcc tcctctttct gtaagacaag attcagtttc attcttcctt
      241 attgtataaa tatttccttc acaaaatctg aaataaatcc ataaatccat cttatccata
      301 attaaagaaa aagtttcacc tcgagatttt gtcaacaatt cgcaaggttg cgatgttgca
      361 atcaaatagc cgaaagacat tttttacctc atacatggtc gaaatcagtt tctgttagtt
      421 cagaatccat tttttcgtca acaactgaat ccgcattttt gaattaacgt tttcatcagc
      481 tgccgtttat ctaaaccggc aggttcagtt tcaaaataag ccttatatga agactgtaag
      541 catttcagaa aaagatcatc agaagacata tctgccgaat caaatacaac tgttttgatt
      601 ttggtactta cccaaaaccc tttttgctct ttttctacta tacggaaatt cagaatattt
      661 ccaaccgaat caaaagcacg gtaaacatca tccatcaaat cctgcggctc tattttcttt
      721 tccaattccg acaatccttg aaatatatcc aaagacacat cttcaaatag aaaaaaagga
      781 ggagttagaa gcggtttttc catgatctgt ccgtagattt tgattcccaa gggcgatgac
      841 gaccaattcc ctgtccaggc aaagtcttgc ccgtattatc cgtaactcga cgatgataat
      901 ggggaaattt tccaatagga tgacctgttc tattaccgaa aggggctatc cgcatattat
      961 tgccgatttt aatctcacgt ccatatttag caaaggaaac aacctttcct gcggcgccta
     1021 caccaccagg aattgcgcct aatccgccag caatagcaac atctctaaca gaagctggtc
     1081 tgcctgtcgt tgcataacta aaaccatgct gtgtccacat accaatggca gcaccaccca
     1141 agatagccaa tggaagaaac gccctctcag tctccttcat ctccttttga gaaagttccg
     1201 ccaactgcat cggcgcatct gcccgcgtat ggaatacttg gttttcaaat atctgattgt
     1261 ccatgctgtt tgccattgcg ggggcaatca tagacagcat cattacggct gcggtaattt
     1321 gttttttcat aataactcct ttggattaca aggttggaaa atcaaagccc tgcttagaac
     1381 gtatgttgca cacccaattt caataggtaa atcagattgc aaatccagca atttgaatat
     1441 tgtcattgtt ccgtgcaaaa gggattttta ttgatgagtt gtgtactggg tttcagcttg
     1501 gctttttaga taatcttttc acaagaacat acatcaatac tgtccaaaaa aaaagatttg
     1561 ataaatatat tgcaacatat tttattccac ctccatccga aacagaaacc aatatatttt
     1621 taattaatac atagctgatt attacattta ttattcctat aatatataag gatcttgcca
     1681 aaattttttt tgattttatt ttaggaatat ctcttatcca tgctaaaata cagcccaatg
     1741 tcgaaaagaa aataacagca aacactacct tacctcctct cacttccaac caaaccgata
     1801 gcaggtttgg ttggaagttg gtttatttat tatttaacgg cgaatgtcag tgttcttacc
     1861 cgtagaacct gcataaccat ttatgccacc agcaacagtc cccactgcta cacctcgcat
     1921 accattaatc agtgctcttc ctccgttaat agggttcatc gcaccaatta acgcaccacc
     1981 tccaattgct gtccaatgtg cctctcgatt atacgagcca ctagcaatag cactagccat
     2041 atagctgaaa tgccctccaa ctcctcccat aatgcctcca acagcattag gaatccactc
     2101 cccctcagtc tccttcatct ccttttgaga aagctccgcc agctgcatcg gcgcatctgc
     2161 ccgcgtgtgg aacacttggt cttcaaatgc ctgattgtcc aagccgtttg ccattgcggg
     2221 ggcgattata gacagcatca tcgtggcttc agtgatttgt tttttcataa taactccttt
     2281 ggattacaag gttggaaaat caaaacctgc ttaaaacgta tgctgtacgc caaatttcag
     2341 ttcggaactg ctttgccctg aaacgttgaa acgtgcggat gcgtttaaag ccgtggtttt
     2401 ggtgaaaccg aaacctgcgc cgaaatgggc ataggtggat gtgtttctgg aggattcccg
     2461 tttgccgtcc gtccggtcgg gctgcctgcc caaccattgg atgcctccgg tcaggctgat
     2521 tctgtcgttg gcggcaaatg agatgttggg gttgagcagc aggtagttgc ccgatttgta
     2581 gcggatgccg tctgaaagga ttttgctgcc gttgatacgg taggcggcgg tgagggaaag
     2641 gacaatcgga tctatggctt tgtaggtggt ggcgccgatg agccaggatt ttcccgacga
     2701 ggctttgttg cgcgattttt cgtaaaccgt gctttcaaga aagctgatta gggcggggtt
     2761 tttgtcgtct ttaaggaaag tgtggctgat gccgagggat acgtcggaca tccgtttgtt
     2821 gcgggttttg ccgttgccgt cgagtttgcg ttcttcgtgc cacagatagc tgccgctgcc
     2881 gtaaatgtcg gtattcccgg tcagtccgta gcgcaaaccg agcgtgccga cgagcatatc
     2941 ggtattgctg ccgttttctt ggatttcggt cggaatgggg ataaacgagg ttgcgccggt
     3001 ttgaatgtaa accggtgcgg caagttcggc gcggttgttt tcgctgttca ggtaggtaag
     3061 ggaagtttcc agtttccatt ttcccttgtc ggtcattatg tcttcaatcg tcaagggcag
     3121 gtcggcataa gtggataaag gcaggatggc gggcaaggcg ggcaaaaaga tgcgcttcat
     3181 atttctccta ttgatattaa ttcttattta ctgataataa tgaatatccg ataatcttgt
     3241 ctaaataaat ttttaaatca taaaaaacaa tatgtttgtt tttgtcaatt atgtttcgat
     3301 atgccgtctg aaaagtttgt gaaaaacggt tacaatccgc cgcatgaaaa aacgcaataa
     3361 tcctcttcct ctgttgaacg gtgtcaaacc cagttatttg gtgctgccgc atgaaaagca
     3421 gttttacggg ctgccgctgc tgcattttct gtgcatccgc tttccttttg tgggcgcgga
     3481 cgattggcgc aggcggttga acagcggttt tgtggtcggt tcggatggtg cgacgttgga
     3541 cgaacatact ttgttcgagc cgggtaaggt gatgttttat tatcgggaaa ccagcagtga
     3601 ggatgagccg cgtattccgt ttgaagaaaa gattttgcat attgatgagc atttgattgt
     3661 ggtggacaag ccgcattttc tgcccgtcat ccccagcggc aggtttttgc gggaaaccct
     3721 gctcacgcgc ctgcgtttgc ggcctgaatt gcagcatttg aatgttgagg acattacgcc
     3781 gctgcaccgc ttggacaagg atacggcagg cgtgatgctg ctgtcgcata atcctgccac
     3841 gcgcggagcc tatcagacga tgtttcaaaa caaaacggta tggaaaacgt atgaggcgct
     3901 tgcgccgaca aggacggatt tgccgtatcc gctcgatgtg gtttcgcgtt tggtgagggg
     3961 tgagaaattt tttacgacgc aagaggcgga aggcgaacca aacgcacata cgacggtcga
     4021 actgattgaa aacagggggg aattcagcct ttaccgcctt acgccgcata cgggcaagaa
     4081 acaccagttg cgcgtgcata tgatgggttt gggtatgccg ctgttgaatg acgcgctcta
     4141 tcccgtgccg tctgaagcgg gcagcgagga ttatcggaaa cctttgaagc tattggcaaa
     4201 aaagattgcg tttgcagatc ctttgtcggg tcgggaaagg gtgttttgca gcggattttg
     4261 cctataatga gagggaacgc aaacccgtat cggcggatgc cgccgatacg ggttttacat
     4321 tatcgatgcc gtctgaaagg ggttttatcc gttcaggcat acgggcgcga agcggaggat
     4381 ggtgtcgcgc aggacgatga gtttgccgtg aaagaaatgc gtggaaccgg cgatggtaat
     4441 gacgggcaaa tcttgcggtt ccgcccattt cagtgctttc ccgatttcga cgacttcgtc
     4501 ttccgcgccg tgtatcatca gcgttttggc aacattggga acggcggacg gctcggggcg
     4561 gccggtatag tggcagactg ccgcgccgat gagcagcaat aaatcgggta tgcgcgcttg
     4621 tgcggcaaat gtggcgacat aaccgccgaa ggagaagccg gataaggcaa attcgggggc
     4681 ttcgggatgt tgggcacggg catagtcgat gacggcgagg cagtcttgcg tttcgccgcg
     4741 tccgtaatcg tgtgtgcctt cgctgccgcc tacgccgcga aggttgggta ggtagcagtg
     4801 gaagccgagt ttgcttaagg ctttggcggc agtttggata actttgttgg tgtttgttcc
     4861 gccctggagg gggttgggat gattgatgac ggcaacaccg cgtgccggta cttgttcgga
     4921 cgggatatgg atggtttcta aaatgccggc aggaccggat atgtgtatgg tttcgggttt
     4981 cagcataatg atttcctctt gattttccgc atgttccaat gcagccgtga agatagttgc
     5041 ttaaaggtgg aaatgcttgc cgttgttggg gttggacgct ttcaggccgg caagcatacg
     5101 gtggaagtcc aatccgtatg cgttgctcag tttgtcggca cgttttttga gtttgtctat
     5161 gttttgctct ttggggctgc tttggaaggc cattaccgcg acattgccgt ggctttcggc
     5221 aggaagttcc aagacgcgcc cttcaaaaac gctcaacaac cgttcgatga agcgttggta
     5281 gcgtttgtcg ccgctccacc agttggttac gaatatgccg tctgaagaga gtgcgtttcg
     5341 gcagtctcgg aaaaacggtt cttcaaccag cgcatcgatg atttgttcgc cgtcgaaccc
     5401 gtccaccaaa atcacatcgg tgttgtggcg gaagactttg atatattctg caccgtctgc
     5461 ttcaataatt tcaaatttct cgccctcgaa aggcaactca aacaggttgc gggcaatggc
     5521 gatgacctga ggattgatgt ccacggcggt ttggcgcgtg tcgggcaggt aggtgtctat
     5581 ccagcgtgca aacgagccgc cgcccaagcc gatttgggtg atatgctgcg gaagtgcgtc
     5641 ggtaaacagc agccagccca tcatcgcgcg gctgtaagag agtaccagct cggacgggtg
     5701 gtcgaggttc attgagcttt gaacggtgtc gctgcccaag tgaagcgaac ggatattgcc
     5761 ttcttcggaa atgccgactt cgggaaagcc ggattttgca ggacgcaggc ggcggtaggg
     5821 atgtcttgcc atcggtgtga acggtcggtt tgaaaggcgg atattttatc agaatgccga
     5881 tgcttgtcct gcttcaaatt aatttctttt caaataaatt acttattcgg atttgccggg
     5941 gctttcggat aaattccttg ccaaggtgcg gcattgcctg cataattcgc tttctttgcc
     6001 ggtatagctc agttggtaga gcacctgact tgtaatcagg gggtcccgag ttcgactctt
     6061 ggtgccggca ccatttctgc tgatggtgtt gcaaaacatt tcagtaagcc ggtatagctc
     6121 agttggtaga gcacctgact tgtaatcagg gggtcccgag ttcgactctt ggtgccggca
     6181 ccagatttga cagtccgatt gtgtaaaaca gtcgggctgt tttgcatttg cggcacggtc
     6241 ggtggcaggg ctgcgggcat ttcactataa tagcccgttt caaactgaaa aggccgtctg
     6301 aaaagggcgg ggtaacaata tctgatgatt actgtgaaca cactgcaaaa aatgaaggcg
     6361 gcgggcgaaa aaatcgctat gctgaccgct tacgaatcca gttttgccgc actgatggac
     6421 gatgccggcg tggaaatgct gctggtcggc gactctttgg gtatggcggt tcaagggcgg
     6481 aaatcgacgc tgcccgtcag cctgcgcgat atgtgctatc acaccgaatg tgtagcacgc
     6541 ggtgcaaaaa atgcgatgat tgtcagcgat ttgccgtttg gtgcatatca gcagagtaag
     6601 gagcaggcgt ttgccgccgc cgccgaactg atggctgccg gcgcgcatat ggtcaaactc
     6661 gaaggcggcg tgtggatggc ggaaacgacc gaatttctgc aaatgcgcgg tattccggtt
     6721 tgcgcgcaca tcggtctgac gccgcaatcc gtgtttgcct tcggcggata taaagttcag
     6781 gggcgcggcg gcaaggcgca ggcgttgctt aacgatgcca aggcgcacga tgaagctgga
     6841 gctgccgtcg tgctgatgga gtgtgttcct gcgcaactgg caaaaaaggt aactgaaact
     6901 gtttcctgtc cgaccatcgg cattggcgcg ggtgtcgatt gcgacgggca ggttttggtg
     6961 atgcacgata tgctcggtat ttttccgggc aagacggcga aattcgtcaa aaactttatg
     7021 cacgggcaaa gcagcattca ggcggcggtt cgggcgtatg ttgccgaagt caaagccaaa
     7081 accttccctg ctgcggaaca tatttttgca gactgaacaa ggtttgctgc tgatgccgtc
     7141 tgaaagccgt ttcagacggc attttgtttt gccgtgcgcg gcgcgtataa tcggcgcgtt
     7201 ttgtcgggca ggaagcccga aggataagga ttaccgttat gcaaatcata cataccattc
     7261 gagaactgcg cgcctggcgt aaaaatgcgg gaaaggtggc atttgtgccg accatgggca
     7321 atctgcatga aggacatctt gctctcgttc gcgaagccaa aaaacgcgcc gacaacgttg
     7381 ttgtcagcat attcgtcaac cgcctgcaat tcggtcaggg cgaggatttc gacaaatatc
     7441 cgcgtacttt gcaacaggat gcggacaagc tggaagccga gggtgttgcc gttgttttcg
     7501 cgcccgatga gaaagaactc tatccgaacg tggaacagcg ttacaacgtc gaaccgccca
     7561 acctgcaaaa tgagttgtgc ggcaagtttc gtccgggaca tttccgcggg gtggcaacgg
     7621 tagtgtccaa gctgttcaat attgtcgcgc cggatgttgc ctgtttcggc aaaaaagact
     7681 atcagcagct tgccgtgatt aaaggtttga ccgaggattt gaattttgat gttgaaatag
     7741 tgcctgtcga tacggggcgc gcggaagacg gtttggcact ctccagccgc aaccagtatt
     7801 tgagtgcggc ggaacgcgac gaagcaccgc gcctgtcccg cgaattaaag gctgttgccg
     7861 aatccttggc gcagggcagt ttggattatg caggtttgga gcggcaggct gccgaccatt
     7921 tgaccgctgc gggctgggtg gtcgattatg tcgaaatccg ccgcgccgat acgctcgaag
     7981 tggcgcgggc gggagataag aaactggtgg tcttggccgc cgcccgtctg gggacgacgc
     8041 gcctgattga caatttggaa ataaaactcc cttaaaccgc aagcgtcggg aatgccgtct
     8101 gaagcggatt tgcgtttcag acggcattta tttttttgaa cggggtttcg caaatctaca
     8161 aacgattctg cttgtgataa agttacgcct gattatatgc cgtctgaagg ttcggacggc
     8221 tgtcggataa aggaagatta tgttacccgc ccgtttcacc attttatctg tgctcgcggc
     8281 agccctgctt gccgggcagg cgtatgccgc cggcgcggcg gatgcgaagc cgccgaagga
     8341 agtcggaaag gttttcagaa agcagcagcg ttacagcgag gaagaaatca aaaacgaacg
     8401 cgcacggctt gcggcagtgg gcgagcgggt taatcagata tttacgttgc tgggagggga
     8461 aaccgccttg caaaaggggc aggcgggaac ggctctggca acctatatgc tgatgttgga
     8521 acgcacaaaa tcccccgaag tcgccgaacg cgccttggaa atggccgtgt cgctgaacgc
     8581 gtttgaacag gcggaaatga tttatcagaa atggcggcag attgagccta taccgggtaa
     8641 ggcgcaaaaa cgggcggggt ggctgcggaa cgtgctgagg gaaagaggaa atcagcatct
     8701 agacggactg gaagaagtgc tggctcaggc ggacgaagga cagaaccgca gggtgttttt
     8761 attgttggca caagccgccg tgcaacagga cgggttggcg caaaaagcat cgaaagcggt
     8821 tcgccgcgcg gcgttgagat atgaacatct gcccgaagcg gcggttgccg atgtggtgtt
     8881 cagcgtacag ggacgcgaaa aggaaaaggc aatcggagct ttgcagcgtt tggcgaagct
     8941 cgatacggaa atattgcccc ccactttaat gacgttgcgt ctgactgcac gcaaatatcc
     9001 cgaaatactc gacggctttt tcgagcagac agacacccaa aacctttcgg ccgtctggca
     9061 ggaaatggaa attatgaatc tggtttccct gcacaggctg gatgatgcct atgcgcgttt
     9121 gaacgtgctg ttggaacgca atccgaatgc agacctgtat attcaggcag cgatattggc
     9181 ggcaaaccga aaagaaggtg cttccgttat cgacggctac gccgaaaagg catacggcag
     9241 ggggacgggg gaacagcggg gcagggcggc aatgacggcg gcgatgatat atgccgaccg
     9301 aagggattac accaaagtca ggcagtggtt gaaaaaagtg tccgctccgg aatacctgtt
     9361 cgacaaaggt gtgctggcgg ctgcggcggc tgtcgagttg gacggcggca gggcggcttt
     9421 gcggcagatc ggcagggtgc ggaaacttcc cgaacagcag gggcggtatt ttacggcaga
     9481 caatttgtcc aaaatacaga tgttcgccct gtcgaagctg cccgacaaac gggaggcttt
     9541 gagggggttg gacaagatta tcgaaaaacc gcctgccggc agtaatacag agttacaggc
     9601 agaggcattg gtacagcggt cagttgttta cgatcggctt ggcaagcgga aaaaaatgat
     9661 ttcagatctt gaaagggcgt tcaggcttgc acccgataac gctcagatta tgaataatct
     9721 gggctacagc ctgctttccg attccaaacg tttggacgaa ggcttcgccc tgcttcagac
     9781 ggcataccaa atcaacccgg acgataccgc tgtcaacgac agcataggct gggcgtatta
     9841 cctgaaaggc gacgcggaaa gcgcgctgcc gtatctgcgg tattcgtttg aaaacgaccc
     9901 cgagcccgaa gttgccgccc atttgggcga agtgttgtgg gcattgggcg aacgcgatca
     9961 ggcggttgac gtatggacgc aggcggcaca ccttacggga gacaagaaaa tatggcggga
    10021 aacgctcaaa cgtcacggca tcgcattgcc ccaaccttcc cgcaaacccc ggaaataatg
    10081 caggtccatc ctttcagacg gcataaggtt tgccgggaag ccggggcatt cgggcaaacg
    10141 gcacgcagtt cgcacgcgtt ttgcacggca cgccgaaccc atcggccggc aggatggcat
    10201 ccgttaagga aattctgatg aaacacaccg tatccgcatc ggtcatcctg cttttgaccg
    10261 cttgcgcgca attacctcaa aataacgaaa acctgtggca gccgtccgaa cacacccgca
    10321 gtttcacggc ggaagggcgg ttggcagtga aagcggaagg gaaaggttcg tatgcaaatt
    10381 tcgattggac ataccaaccg cccgtggaaa ccatcaatat caatacccct ttgggcagta
    10441 cgctcgggca gttgtgtcaa gacagggacg gcgcattggc agtggacggc aaaggaaatg
    10501 tctatcaggc ggaaagtgcg gaagaattga gcaggcagct ggtcggtttc aaactgccaa
    10561 tccaatatct gcatatctgg gcagatggca ggcgtgtggc gggcgcgcct taccgcatcc
    10621 tgccggacgg catattggaa caatacggtt ggactgtcgg cagaaccgcc gacagtgggg
    10681 ggcaagtccg aacgttgcaa ctgaataacg gaaatttgaa catcaggctg gttttcaccg
    10741 aaatcggtat gccgtctgaa accgaaaccc cggaacgctg tgcggcgcgc acgagataag
    10801 gcggacagat gaatattgcg gacggacggc aggcgtttcc cgcacctgca aaactgaatc
    10861 tcgatttgag gattactgga aagcgggaag acggttatca caatatcgaa agcatattct
    10921 gcctgataga tttgcaggat accgtatatt tgaaaccgag ggacgacggc aaaatcatcc
    10981 tgcacaatcc tgtcggcgga ataccgcagg aagccgattt gagctaccgt gccgcatcgt
    11041 tgctgcaaaa atatgcgcgc aaccccgccg gcgtggaaat atggctggac aaaaaaatcc
    11101 cgacaggggc gggtttgggc ggcggaagct cggatgcggc aaccgttttg ctggtgttga
    11161 accgttggtg gcagtgcggt ctgacgcagc ggcagctcat tgattcgggc gcggctctgg
    11221 gggcggacgt accgtttttt attttcggca aaaatgcgtt tgcgcggggt ataggcgaca
    11281 ggctggacga aatggatatt ccgaaacagt ggtatgtcat cgtcaaaccg cccgtccacg
    11341 tttccactgc aaaaattttc acacacgaag gcttgacacg aaattccgcc tcaagcataa
    11401 tgccgacttt ccaaaacctg caaccgttta gaaatgacat gcaggcagtt gtatttaaag
    11461 aataccctga agtttggaaa gcctattccg aattgtcccg atatggattt gccttaatga
    11521 caggttctgg tgcgtgtgta ttcacggcgt gtcaagatag gaatagcgca tacaatatat
    11581 accgacaagt ttcagatttg tacgaggcat atttggcaga gggtctttca aaacatcctt
    11641 ggttgtccgt ataaacattg ttggggagtc gtcaagcggt taagacactg gattttgatt
    11701 ccagcatgcg aaggttcgaa tccttcctcc ccagccaagt caaacgagtt ggggagtcgt
    11761 caagcggtta agacactgga ttttgattcc agcatgcgaa ggttcgaatc cttcctcccc
    11821 agccagccct ttttggggag tcgtcaagcg gttaagacac tggattttga ttccagcatg
    11881 cgaaggttcg aatccttcct ccccagccag ataaaagcgt gtaagcctgc ttacacgctt
    11941 ttatttcata gaaataaaaa tattgaaatg cctttgtttg tgtcggatgt tgcaggtata
    12001 atgtcgggct tggtacaagc agagggaagc attgtgtttt ctgagcggaa gttaaacata
    12061 aaatcaggtg agaatatggc tgcgtacgac agtttgatgg tatttacagg caatgccaat
    12121 cccgaattgg cacaacgtgt tgtcaggcat ttggacattt ctttgggcaa tgcttccgta
    12181 tccaagtttt cagacggcga agttgccgtc gaactgttgg aaaacgtacg cgggcgcgat
    12241 gttttcatcc ttcagccgac ctgtgcgccg accaatgaca acctgatgga aatcctgacg
    12301 atggcggatg cactgaagcg tgcttcggca ggtcgtatta ccacagccat tccgtatttc
    12361 ggctatgcgc gccaagaccg ccgtccgcgt tccgtccgcg ttccgatttc tgccaaactg
    12421 gtggcaaata tgctgtattc ggcagggatc gaccgtgttt tgactgtcga tttgcatgcc
    12481 gaccagattc aaggtttctt cgatattcca gtggacaata tttatgccac cccgattctg
    12541 ttgaacgaca tcaaacaaca gcggattgaa aatctgaccg tcgtcagccc ggacatcggc
    12601 ggtgtcgtcc gcgcccgcgc cgtggcaaaa tccctgaatg ccgacttggc aatcatcgac
    12661 aaacgccgcc cgaaagccaa tgtggcggaa gtcatgaaca tcatcggcga tattcaaggc
    12721 agaacctgtc tgattgtgga cgatatgatt gacactgcaa atacgctgtg caaagccgcc
    12781 gtcgctctga aagagcgggg ggcggaacgt gtcttggcat atgccagcca cgccgtattc
    12841 tccggagagg cggtcagccg tatcgcctca tccgaaatcg accaggtggt cgtaaccgat
    12901 accattcctt tgtctgaagc ggctaaaaac tgcgaccgta tccgtcaggt aacgattgcc
    12961 ggtctgttgg ccgaaaccgt ccgccgcatc agcaatgaag aatccgtttc atatctcttt
    13021 aatgaagaag tgatgacagg cagtatgttg ctgccataag cccgaagccg tcttaagctg
    13081 gtcgcggccg atgacggtag ttttatttaa attggagtat ttaacatgac ttatgaaatt
    13141 caagcctctg ttcgtgaagc acaaggcact ggtgcgagcc gccgcctgcg tcgcgaaggc
    13201 caaatccccg gcattttgta cggtgaaggc caagagcccg ttgcaatcgc tgtggatcac
    13261 aaaactgtat tctacgcatt ggaaaaagaa tctttccata ctgcgttgat taaattgtct
    13321 ctgaacggcg aaaccaaaga cgttatcgtc cgcgatttcc aaatgcaccc gttccgccgc
    13381 gaagtccaac acatcgactt ccaagctgtg aaagccgatc aacttgtacg tatccgtgtt
    13441 cccctgcaca tcgttaacgc tgaaaattcc caagcggtca aactgcaagg cggccgcgta
    13501 tctctgttaa acacttctgt tgaagtagtt gctttgcctg ccaacatccc tgctttcttg
    13561 gatttggatt gtgccgaagt ggttgccggc gacattctgc acttgtcaga catcaaactg
    13621 cctgaaggtg tagaaagcgt ttccctgaaa cgtaacgaaa atctggctgt tgccactgtt
    13681 accggtaaaa aacgctaatt gattgaaaag caggcggtac gtatatgatg cgtaccgccc
    13741 tgttgtttta tgccgtctga accgtgtttc agacggcatt tctttatttg ttggaaaaac
    13801 gggatatttg aaacggcaga ttactgccct gtcagacacg cccaaagcct ttgccaccgg
    13861 cttctttttt ttacattttc cagtgcgacg atttcttttt cggcaatggt gtatccgttt
    13921 tgtctgattt tgatttttcc taaaatttgc ccttttttta ctggggcggg aatcggctgt
    13981 atggtttcca aaatttgttc ggttgttttc gcttccttat gtggcagagt gatgtaggct
    14041 tctttgagga agcctgcgcg gacggttttt ttgctgcctc cggaaatttg gatttgggca
    14101 acggttttgc ctttcggata tattttgggc gtatcgaagg cttgcaatgc ccagttcagc
    14161 agcttgctgt tgtctgatgc gcgtgtttcc gccgattccg aacccaatgt gatgacaagg
    14221 atgtgcctgc cgttgccgga gtatgacacg gcaaggttgt agccgccgct ttctgtgtgt
    14281 ccggctttca gaccgtttac attgttgtcc ctatataaaa ggatattgcg gttgttttgt
    14341 tctatatttt tgaatttgaa agatttgatg gaaaacagcg ggtaatattc cggaaagtcg
    14401 cgcatcaatg cttcagacag cagggcaagg tctttggcgg tggaaacctg tccttctcta
    14461 ctcaagcctg tcgggttttt gaatacagtg ttcttcatgc ccaagcgtcg ggcttctttg
    14521 ttcatttgtt gcacaaaatt ttcaatcgag ccgttgccca gtcggccggc aagggttagg
    14581 gcggcatcgt ttgcggatag tgcaatcatg ccttttaaga gtttgtcggt gctgaccgta
    14641 tcgccgggac gtacaaacat tctgcttcct tctgaagccc atgcggattc gggtattttt
    14701 aagttttctt cagatcggat atttcccgat ttcatgtttt tgaaaaccag atatgcggtc
    14761 atcagttggg ttagtgccgc cggttcgaca ggggtattga tgtttttggc ggataaaatc
    14821 tgtttgcttt gaaggtcgat aacgatgtgt gccgctgtga gggtttcggg tgtttggaac
    14881 gtgggggcgg cgtgtaccgc cggtttgttg ggcgcgggcg atgcggccgt tgcgtgagaa
    14941 atgcctaaga tgatggaaag caggacgggc aggattttat gtgctgtcat gaaatattct
    15001 aattgtgtga gtgtttcagc ctgccgatta tacgcttagg gtgtctgatc gggcggattt
    15061 ttcttgcttt cgcgccgtct tgggcgtatg gttttgggtt ttgcgatttt aataaaccga
    15121 ttatcccata ttgaattatg aacacgcccc ttccttattc caattacctc atccgcatcc
    15181 tgacagcatc tgtctatgat gtcgcggtcg aaacgccttt ggaaccggca cgcagccttt
    15241 ctgtacgttt gaaaaacaac atccttttga aacgcgaaga tttgcagccg gttttttcgt
    15301 tcaaaatacg cggcgcgtac aacaaaatgt ccaagttgcc gaaagatgcg ctcgcttgcg
    15361 gcgtgattgc ggcaagcgcg ggcaatcacg cacaaggcgt ggcattgtcc gcacagcgtt
    15421 tgggttgccg tgccgttatc gtcatgccgg agactacgcc gaaaatcaaa gtggatgcgg
    15481 tcaaaagccg tggcggcgag gtggttttgc ggggcgtttc atacaacgat gcctacgatt
    15541 atgcgatgga gttggcggaa aaagaagggt taacctatat cgcgccgttt gatgatcctg
    15601 atgtgattgc gggacagggg acggtgggga tggaaattgt cagccagcat cccgatccaa
    15661 tccgcgccgt attcgtaccg ataggcggcg gcggtttggc ggcgggcgtg gcggcattta
    15721 tcaagcaggt ccgccccgaa atcaaagtta tcggcgttca gaccaacgat tcctgctgta
    15781 tgaagcaatc ggttgaagcg ggcgaaatcg tccatttgaa agatgtcggg ctgttttcag
    15841 acggcacggc ggtcaaagtc gtcggaaacg aaaccttccg tctctgcaaa gaacttttgg
    15901 atgaaatcat tacagtcgat accgatgcgg tttgcggcgc ggtcaaggat attttcgatg
    15961 acacgcgcag cattaccgag ccggcgggcg cgttggcgtt ggcgggtctg aaagcctata
    16021 tcgcccgaga aggcgcggaa aaccaaaccc tgattgccgt taccagcggt gcgaatatga
    16081 attttcaccg tttgcgccat gtgtcggagc gtagtgaatt gggcgagggc aacgaaggta
    16141 tttttgccgt taccatcccc gaagaacgcg gcagcttcct taagtttgtc aatatattgg
    16201 gaaataggaa tattaccgag ttcaactacc gctacggaga cgatgaaaaa gcgcatatct
    16261 ttgtcggact tcaagcggca ggcccgcagg atttggcggt tatcggtagc cggttggatg
    16321 aggcgggatt gcccaatgtc gacctgactg atgatgagat tgccaaaatc catatccgtt
    16381 atatggttgg agggcggacg gacaaagtag aaaacgagcg tttggtcagt tttgagtttc
    16441 cggagcgtcc gggggcgttg gcgcgctttt tgaaccatat gcagggaggg tggaatatta
    16501 cgctcttcca ttaccgcaac cacggtgcgg attacgggcg gattctggtc ggtatcgatg
    16561 tgccgccgca cgatgccgcc gcatttgacg gtttcttgga aagtctggga tacagctatc
    16621 acgaggaaac gcaaaatgcc gcgtacaagc tgtttcttgc ctgacgcttg aaagcgcaat
    16681 gccgtctgaa agcctttcag acggcattgc gcttttatgg ttaaatcgaa tattcaatca
    16741 gttcgttttg agagaagaca taaacctgtt tcggaatcag cttcaattct ttgccttcgg
    16801 cgattgggta acgcgcggca tcgctgccag ccagcgtgat gtgcacgtct tgtttgccgt
    16861 gtttcaccaa aatatgcgtc aatgccccga cggcgtggac tttttcgatt tcggcacaaa
    16921 tcatcggtgt ttcgtgttcg gcggcgatct gccattcgtg cgggcggata tagccggtgg
    16981 cggtttgttc ctgccatttg tattgtgcgt ccaatttcca cgcgaagccg ttataatgcc
    17041 agaagccttt ttcgatgcgt ccttcaaatg cgtcggtttc gccgaggaac tcggtaacga
    17101 aggcattttc gggtttgcgg taaatagctt cggcgctgcc ggtttgttcg attttgccgt
    17161 ggttcatcac gacgatttcg tcggaaactt cgagggcttc ttcttggtcg tgcgtaacca
    17221 gaatgctggt tacacccagg ttgtgatgga tgtcgcgcag ccaggtgcgt aattctttgc
    17281 gtactttggc gtccaacgcg ccgaagggtt cgtccaaaag caggagtttc ggttcgaccg
    17341 caagcgcacg ggcgagggcg atgcgctggc gttgcccgcc ggagagttgg tgcggatagg
    17401 attttgccaa atgcgagagt tgtacgagtt tcagcaattc ttcgacttta gtgcagattt
    17461 gttctttgga cgggcgttcg gacttgggca atacggtcaa accgaaagcg acgttgtcaa
    17521 acacgttcat atggcggaaa agggcgtagt gttggaacac gaagccgact ttgcgctcgc
    17581 gcacgtgctt ggcggttacg tcttgcccat caaacagaat cttgccgccg tcggcgtttt
    17641 ccagtccggc gataatgcgt aaaagcgtgg ttttgccgca gccggacggg ccgagtaggg
    17701 aaacgagttt gccggtgggg acgttgaggt tgatgttttt cagcgcgtga aaattgccga
    17761 agtgtttgtt taagttttgg atggtgatac tcatattgcg ttcctttcgg cggcggcgag
    17821 ttttttgtct t
//
LOCUS       DAXHPV010000027        16651 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.027, whole genome shotgun sequence.
ACCESSION   DAXHPV010000027 DAXHPV010000000
VERSION     DAXHPV010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16651)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16651)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16651
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.027"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(76..1245)
                     /gene="metK"
                     /locus_tag="ACFM6C_000668"
     CDS             complement(76..1245)
                     /gene="metK"
                     /locus_tag="ACFM6C_000668"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HFC6158159.1"
                     /translation="MSEYLFTSESVSEGHPDKVADQVSDAILDAILAQDPKARVAAET
                     LVNTGLCVLAGEITTTAQVDYIKVARETIKRIGYNSSELGFDANGCAVGVYYDQQSPD
                     IAQGVNEGEGIDLNQGAGDQGLMFGYACDETPTLMPFAIYYSHRLMQRQSELRKDGRL
                     PWLRPDAKAQLTVVYDSETGKVKRIDTVVLSTQHDPSIAYEKLKNAVIEQIIKPVLPS
                     ELLTDETKYLINPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVD
                     RSAAYACRYVAKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLITLV
                     REHFDLRPKGIVQMLDLLRPIYSKSAAYGHFGREEPEFTWERTDKAAALRAAAGL"
     regulatory      complement(1428..1538)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01725"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="SAM-I-IV-variant riboswitch; SAM riboswitches
                     modulate the expression of downstream genes in response to
                     levels of S-adenosylmethionine; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF01725"
     gene            1591..2487
                     /locus_tag="ACFM6C_000669"
     CDS             1591..2487
                     /locus_tag="ACFM6C_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HFC6158160.1"
                     /translation="MFRLQFGLFPPLRTAMHILLTALLKCLSLLPLSCLHTLGNRLGH
                     LAFYLLKEDRARIVANMRQAGMNPDPKTVKAVFAETAKGGLELAPAFFRKPEDIETMF
                     KAVHGWEHVQQALDKHEGLLFITPHIGSYDLGGRYISQRLPFPLTAMYKPPKIKAIDK
                     IMQAGRVRGKGKTAPTSIQGVKQIIKALRSGEATIVLPDHVPSPQEGGEGVWVDFFGK
                     PAYTMTLAAKLAHVKGVKTLFFCCERLPGGQGFDLHIRPVQGELNGDKAHDAAVFNRN
                     TEYWIRRFPTQYLFMYNRYKMP"
     gene            complement(2531..3595)
                     /gene="tsaD"
                     /locus_tag="ACFM6C_000670"
     CDS             complement(2531..3595)
                     /gene="tsaD"
                     /locus_tag="ACFM6C_000670"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HFC6158161.1"
                     /translation="MLVLGIESSCDETGVALYDTERGLRAHCLHTQMAMHAEYGGVVP
                     ELASRDHIRRLVPLTEGCLAQAGASYGDIDAVAFTQGPGLGGALLAGSSYANALALAL
                     DKPVIPVHHLEGHLLSPLLAEEKPDFPFVALLVSGGHTQIMAVRGIGDYALLGESVDD
                     AAGEAFDKTAKLLGLPYPGGAKLSELAESGRFEAFVFPRPMIHSDDLQMSFSGLKTAV
                     LTAVEKVRAENGADDIPEQTRNDICRAFQDAVVDVLAAKVKKALLQTGFRTVVVAGGV
                     GANRKLRETFGNMTVQIPTPKGKPKHPSEKVSVFFPPMAYCTDNGAMIAFAGAMHLGK
                     GREVGAFNVRPRWPLSEIVR"
     gene            complement(3711..4898)
                     /gene="ccsB"
                     /locus_tag="ACFM6C_000671"
     CDS             complement(3711..4898)
                     /gene="ccsB"
                     /locus_tag="ACFM6C_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcsB"
                     /protein_id="HFC6158162.1"
                     /translation="MTEHYKTLPEHELLIQKSLISNLNLWDWVFAVLVFAATVFVQTR
                     SGMHMDIYETVMLWASAGIAVFLGWFFKPMRWFVPLSVLLAYAAVGLYGGNIKSAEIF
                     LLRYFLSSQSAIMWQCAFVFFALFAYISGAVLASVKNVPTNTLLGMGTVFAWVSAVAG
                     FTGLLVRWHESYLLRPDAGHIPVSNLYEVFILFLVITALMYLYYEGKFAIQKLGGFVF
                     GFMAVVVGFVLWYSVSREAHTIQPLIPALQSWWMKIHVPANFIGYGAFCISAMLGIAE
                     LVSLRAEGKGGKLWLPPSALIDEVMYKAIAVGFLFFTIATILGALWAADAWGRYWSWD
                     PKETWAFIVWLNYAVWLHLRLVAGWRGKVLAWWAIIGLFVTAFAFIGVNMFLSGLHSY
                     GTL"
     gene            complement(4891..6843)
                     /locus_tag="ACFM6C_000672"
     CDS             complement(4891..6843)
                     /locus_tag="ACFM6C_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein ResB"
                     /protein_id="HFC6158163.1"
                     /translation="MRFAVALLSLLGIASVIGTVLQQNQPQTDYLVKFGPFWAQIFGF
                     LGLYDVYASAWFVVIMMFLVVSTSLCLIRNVPPFWREMKSFREKVKEKSLAAMRHSSL
                     LDVKIAPEVAKRYLEVQGFQGKTVSREGGSVLIAAKKGTMNKWGYIFAHVALIVICLG
                     GLIDSNLLLKLGMLTGRIVPDNQAVYAKDFKPESILSASNLSFRGNVNISEGQSADVV
                     FLNADNGILVQDLPFEVKLKKFHIDFYNTGMPRDFASDIEVTDKATGEKLERTIRVNH
                     PLTLHGITIYQASFADGGSDLTFKAWNLGDASREPVVLKATSIHQFPLEIGKHKYRLE
                     FDQFTSMNVEDMSEGAEREKSLKSTLNDVRAVTQEGKKYTNIGPSIVYRIRDAAGQAV
                     EYKNYMLPVLQEQDYFWITGTRSGLQQQYRWLRIPLDKQLKADTFMALREFLKDGEGR
                     KRLVADATKDAPAEIREQFMLAAENTLNIFAQKGYLGLDEFITSNIPKEQQDKMQGYF
                     YEMLYGVMNAALDETIRRYGLPEWQQDEARNRFLLHSMDAYTGLTEYPAPMLLQLDGF
                     SEVRSSGLQMTRSPGALLVYLGSVLLVLGTVLMFYVREKRAWVLFSDGKIRFAMSSAR
                     SERDLQKEFPKHVESLQRLGKDLNHD"
     gene            complement(7120..7743)
                     /locus_tag="ACFM6C_000673"
     CDS             complement(7120..7743)
                     /locus_tag="ACFM6C_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HFC6158164.1"
                     /translation="MKRLTLLAFVLAAGAVSASPKADVEKGKQVAATVCAACHAADGN
                     SGIAMYPRLAAQHTAYIYHQTIGIRDGKRTHGSAAVMKPVVMNLSDQDILNVSAFYAK
                     QQPKSGEANPKENPELGAKIYRGGLSDKKVPACMSCHGPSGAGMPGGGSEIQAYPRLG
                     GQHQAYIVEQMNAYKSGQRKNTIMEDIANRMSEEDLKAVANFIQGLR"
     gene            7949..8578
                     /gene="yihA"
                     /locus_tag="ACFM6C_000674"
     CDS             7949..8578
                     /gene="yihA"
                     /locus_tag="ACFM6C_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTP-binding protein
                     YihA/YsxC"
                     /protein_id="HFC6158165.1"
                     /translation="MNLFQNAKFFTTVNHLKDLPDTPLEIAFVGRSNAGKSSAINTLT
                     NHVRLAYVSKTPGRTQHINFFELQNGNFMVDLPGYGYAQVPEAVRAHWVNLLGDYLQQ
                     RKQLIGLVLIMDARHPLKELDIRMLDFFHTTGRPVHILLSKADKLSKNEQIKTLSQVK
                     KLLKPYSDRQNISVQLFSSLKKQGIDEANRTVGSWFDAADAAASSPEEN"
     gene            complement(8699..11095)
                     /locus_tag="ACFM6C_000675"
     CDS             complement(8699..11095)
                     /locus_tag="ACFM6C_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HFC6158166.1"
                     /translation="MIKKILTTCFGLVFGFCVFGVGLVAIAILVTYPKLPSLDSLQHY
                     QPKMPLTIYSADGEVIGMYGEQRREFTKIGDFPEVLRNAVIAAEDKRFYRHWGVDVWG
                     VARAAVGNVVSGSVQSGASTITQQVAKNFYLSSEKTFTRKFNEVLLAYKIEQSLSKDK
                     ILELYFNQIYLGQRAYGFASAAQIYFNKNVRDLTLAEAAMLAGLPKAPSAYNPIVNPE
                     RAKLRQKYILNNMLEEKMITVQQRDQALNEELHYERFVRKIDQSALYVAEMVRQELYE
                     KYGEDAYTQGFKVYTTVRADHQKVATEALRKALRNFDRGSSYRGAENYIDLSKSEDVE
                     ETVSQYLSGLYTVDKMVPAVVLDVTKKKNVVIQLPGGRRVTLDRRALGFAARAVNNEK
                     MGEDRIRRGAVIRVKNNGGRWAVVQEPLLQGALVSLDAKTGAVRALVGGYDFHSKTFN
                     RAVQAMRQPGSTFKPFVYSAALSKGMTASTVVNDAPISLPGKGPNGSVWTPKNSDGRY
                     SGYITLRQALTASKNMVSIRILMSIGVGYAQQYIRRFGFRSSELPASLSMALGTGETT
                     PLKVAEAYSVFANGGYRVSSHVIDKIYDRDGRLRAQMQPLVAGQNAPQAIDPRNAYIM
                     YKIMQDVVRVGTARGAAALGRTDIAGKTGTTNDNKDAWFVGFNPDVVTAVYIGFDKPK
                     SMGRVGYGGTIAVPVWVDYMRFALKGKQGKGMKMPEGVVSSNGEYYMKERMVTDPGLT
                     LDNSGIAPQPSRRAKEDDGGAAEGGRQAADDEVRQDMQETPVLPSNTGSKQQQLDSLF
                     "
     gene            11247..12362
                     /gene="pilM"
                     /locus_tag="ACFM6C_000676"
     CDS             11247..12362
                     /gene="pilM"
                     /locus_tag="ACFM6C_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0043683 - type IV pilus assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis protein PilM"
                     /protein_id="HFC6158167.1"
                     /translation="MRLFKSLKNPKKTDAKLPKKSSGLNNRAAIGIDIDQHSIKMVQL
                     SGRSLNQIQLEKYVIAKLPKNIIQGNKVQNYDQLVTYLQQAYAKLGTSCKNIIASVPQ
                     NLATIEQLTYTDKDAELDLQGFVESSISEVSSISLEEANYDYQVLSQSAAGEAVLAVA
                     SRKDEIEPLIDAFNAAGMKLSALDVDIFGQYNAYALWINHFAPELAAEKVAIFGVYAA
                     QTYALVIQDGKILYKQETSVSEEQLNQLIQRTYQVTEEKAEEIINSPQKPSDYQESVA
                     NYFNQQITQEIQRVLQFYYTTQTADDMTDIKHILLTGEAARQEGIAQTVASQTNADVQ
                     CVHPARYFADNLKTDKQQFELDAPTLTRAFGLAVRGL"
     gene            12365..12964
                     /locus_tag="ACFM6C_000677"
     CDS             12365..12964
                     /locus_tag="ACFM6C_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilN domain-containing protein"
                     /protein_id="HFC6158168.1"
                     /translation="MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYL
                     FIDNMINNQSERNTLLETSIAHLDTELSEIQKLKQEKDAFLIKKNKIEELQLKRLQAA
                     KILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
                     SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN"
     gene            12965..13612
                     /locus_tag="ACFM6C_000678"
     CDS             12965..13612
                     /locus_tag="ACFM6C_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 4a pilus biogenesis protein PilO"
                     /protein_id="HFC6158169.1"
                     /translation="MASKSSKTNLDLNNLHLLNLPARLFIALLAVAAVLGLGYAGLFK
                     SQMESLEEYEAKETELKNTYKQKSIDAASLNNLRDELASIRSAFDIMLKQLPTDAEIP
                     NLVQELHQAGSSNGLRLDSVMPQPPVDDGPIKRLPYSISITGNYEQISQFTRDVGSLS
                     RIITLESLKIAQSPENGGNPDGKSSILNLSAIATTYQAKSVEELAAEAAQNAEQK"
     gene            13630..14175
                     /locus_tag="ACFM6C_000679"
     CDS             13630..14175
                     /locus_tag="ACFM6C_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilP"
                     /protein_id="HFC6158170.1"
                     /translation="MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAP
                     TLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDTKRIKETLEKFSLENMRYVGILK
                     SGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
                     LLLNSSDKNTEQAAAPAAEQN"
     gene            14194..16479
                     /gene="pilQ"
                     /locus_tag="ACFM6C_000680"
     CDS             14194..16479
                     /gene="pilQ"
                     /locus_tag="ACFM6C_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus secretin PilQ"
                     /protein_id="HFC6158171.1"
                     /translation="MNTKLTKIISGLFVATAAFQTASAGNITDIKVSSLPNKQKIVKV
                     SFDKEIVNPTGFVTSSPARIALDFEQTGISMDQQVLEYADPLLSKISAAQNSSRARLV
                     LNLNKPGQYNTEVRGNKVWIFINESDDTVSAPARPAVKAAPAAPAKQQATAPSTKSAV
                     SVSKPFTPAKQQAAAPFTESVVSVSAPFSPAKQQAAASAKQQTAAPAKQQAAAPAKQT
                     NIDFRKDGKNAGIIELAALGFAGQPDISQQHDHIIVTLKNHTLPTTLQRSLDVADFKT
                     PVQKVTLKRLNNDTQLIITTAGNWELVNKSAAPGYFTFQVLPKKQNLESGGVNNAPKT
                     FTGRKISLDFQDVEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQ
                     ARNLDMRQQGNIVNIAPRDELLAKDKAFLQAEKDIADLGALYSQNFQLKYKNVEEFRS
                     ILRLGNADTTGNRNTLVSGRGSVLIDPATNTLIVTDTRSVIEKFRKLIDELDVPAQQV
                     MIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGGDDKWGAETKINL
                     PITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKEAKIESGYEIP
                     FTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQCASGNQTIL
                     CISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTRGKKTDR
                     RELLIFITPRIMGTAGNSLRY"
BASE COUNT         4497 a         4737 c         3797 g         3620 t
ORIGIN      
        1 gtcctgattt ttgttaatcc actatataaa aatgccgtct gaaccttcag acggcatttc
       61 tttattcaga ccaaattaca gaccggcggc tgccctcaat gcggctgctt tgtcggtgcg
      121 ctcccaagta aactcgggtt cttcgcggcc gaaatgtccg taagcggcgg atttactgta
      181 aatcgggcgc aagaggtcga gcatttggac gatgcctttg gggcgcaggt cgaaatgttc
      241 gcgaactaag gtaatcagtt tttcttcgct gattttgcct gtgccgaaag tatcgatgga
      301 aatcgaagtc ggttcggcaa cgccgatggc gtaggaaact tgaatttggc attgggttgc
      361 caagcctgcg gcgacaatgt ttttcgccac ataacggcag gcataggcgg cggaacggtc
      421 gactttggac gggtctttgc cggagaacgc gccgccgccg tgcggagccg cgccgccgta
      481 ggtatcgacg atgattttac ggccggtcaa accgcagtcg ccttgcggac cgccgatgac
      541 gaagcggccg gtcggattga tcaggtattt ggtttcgtcg gtcagcagtt cagacggcag
      601 gacgggcttg ataatctgct cgatgacggc gtttttcagt ttttcgtaag cgatggacgg
      661 atcgtgctgg gtagagagga cgacggtgtc gatgcgtttt actttgccgg tttcgctgtc
      721 gtaaaccacg gtcagttggg cttttgcgtc agggcgcagc caaggcaggc ggccgtcttt
      781 gcgtaattcg ctttgacgct gcatcaggcg gtggctgtaa tagatggcaa acggcatcag
      841 ggtcggggtt tcgtcgcagg catagccgaa catcaagcct tggtcgcctg cgccttggtt
      901 caagtcgatg ccttcgcctt cgtttacgcc ttgggcaatg tccggagatt gttggtcgta
      961 gtacacgccg accgcgcagc cgttggcatc aaaacccaac tcggaggagt tgtagccgat
     1021 acgtttgatg gtttcgcgtg cgactttgat gtagtccact tgggcggtgg tggtgatttc
     1081 gcccgccaat acgcacaagc ctgtgttgac caaggtttct gcggcgacac gtgctttagg
     1141 gtcttgcgcc aaaatggcat ccaaaatcgc atcggacact tggtcggcta ctttgtccgg
     1201 atggccttcg gataccgatt cggaagtaaa cagatattcg ctcattgaga ttttccttga
     1261 aaaacaaacc atcttcgtta gacggcatgt tgtatgaaca taatgtcgac agcgggaaat
     1321 atagcaaaat ttccctattc ataccattca gttgagaaat attcccattt gaacagcact
     1381 ttggaatctc tacccgtacg tttcttacag gcaaaaaaat tcccgcatta agcgggtttg
     1441 gattgctctg gtgagccaca tcggcttttc aaccgtccac cttacttttc cctttgaaaa
     1501 gcaggttggc atggaattcc caactcttaa tgcagcgcgg atggtagcag aaaagccttt
     1561 ccgccgcaat acttcccttt ttcagacggc atgtttcgtt tacaattcgg gctgtttccc
     1621 cctttgcgaa ccgccatgca catcctgttg accgccctgc tcaaatgcct ctccctgctg
     1681 ccgctttcct gtctgcacac gctgggaaac cggctcggac atctggcgtt ttacctttta
     1741 aaggaagacc gcgcgcgcat cgtcgccaat atgcgtcagg caggcatgaa tcccgacccc
     1801 aaaacggtca aagccgtttt tgcggaaacg gcaaaaggcg gtttggaact tgcccccgcg
     1861 tttttcagaa aaccggaaga catagaaaca atgttcaaag cggtacacgg ctgggagcac
     1921 gtgcagcagg ctttggacaa acacgaaggg ctgctgttca tcacgccgca catcggcagc
     1981 tacgatttgg gcggacgcta catcagccaa cggctgccat tccccttaac cgccatgtat
     2041 aaaccgccga aaatcaaagc gatagacaaa atcatgcagg cgggcagggt tcgcggcaaa
     2101 ggaaaaaccg cgcctaccag catacaaggg gtcaaacaaa tcatcaaagc cctgcgttcg
     2161 ggcgaagcaa ccatcgtcct gcccgaccac gtcccctccc ctcaagaagg cggggaaggc
     2221 gtatgggtgg atttcttcgg caaacctgcc tataccatga cgctggcggc aaaattggca
     2281 cacgtcaaag gcgtgaaaac cctgtttttc tgctgcgaac gcctgcctgg cggacaaggt
     2341 ttcgatttgc acatccgccc cgtccaaggg gaattgaacg gcgacaaagc ccatgatgcc
     2401 gccgtgttca accgcaatac cgaatattgg atacgccgct ttccgacgca gtatctgttt
     2461 atgtacaacc gctacaaaat gccgtaacga aaataaaaat gccgtctgaa caatttcaga
     2521 cggcattttg tcatctgacg atttccgaca gcggccagcg cggacggaca ttgaacgcac
     2581 cgacctccct gcccttgccc aggtgcatcg caccggcaaa ggcaatcatg gcaccgttgt
     2641 ccgtgcagta tgccatcggc gggaaaaaca cgctgacttt ttcggacgga tgtttcggct
     2701 tgcctttggg ggtcgggatt tgcaccgtca tgttgccgaa agtttcgcgg agtttgcggt
     2761 ttgcaccgac cccgccggcg accactacgg ttctgaaccc tgtctgcaac agggcttttt
     2821 tcactttcgc cgccaacaca tcgactaccg catcttgaaa cgcacggcag atgtcgttgc
     2881 gtgtctgctc aggaatgtca tccgccccgt tttccgcgcg cactttctcg acggcggtca
     2941 atacggcggt tttcaaacct gaaaaactca tctgcaaatc gtcggaatga atcatcgggc
     3001 gcggaaaaac aaacgcttcg aacctgcccg attccgcaag ttccgacagt ttcgcaccgc
     3061 ccggatacgg caagcccagc agtttcgccg ttttgtcgaa tgcctcgccc gccgcatcat
     3121 cgacgctctc gcccaaaagc gcgtagtcgc ctatgcccct gaccgccata atctgcgtat
     3181 gcccgcccga aaccaacagc gcgacaaaag gaaagtcggg tttttcctcc gccaacagcg
     3241 gcgacagcag atgtccttcc aaatgatgga cgggaataac aggcttgtcc aacgctaaag
     3301 ccagcgcgtt ggcgtagctc gaacccgcca gcagcgcacc gcccaaaccg ggcccctgcg
     3361 taaaggcaac cgcgtcaatg tcgccatacg atgcgcccgc ctgcgccaaa cagccttccg
     3421 tcaacggaac aaggcggcgg atatggtcgc ggcttgccag ctccggcaca accccgccgt
     3481 attcggcgtg cattgccatc tgcgtgtgca ggcagtgcgc ccgcaatcct cgttcggtgt
     3541 catacagcgc aacgcctgtt tcgtcgcaag aagattcgat tcccaatacc aacatggtct
     3601 gatgccgtta aaaactgaaa aacgtattct agcggatttc ggcacgactg ccgtatccca
     3661 aaaacggaac atgccgtctg aagcccttca gacggcatcg tcgcaccgta tcaaagcgtt
     3721 ccgtaagaat gcagcccgct caaaaacata ttcacgccga taaaagcaaa tgcggttacg
     3781 aacaaaccga taatcgccca ccacgccagc actttgccgc gccaaccggc aaccagccgc
     3841 aagtgcagcc aaacggcgta attgagccag acgatgaacg cccacgtctc tttcggatcc
     3901 caactccaat agcgtcccca agcatctgcc gcccacagcg cacccaaaat ggtggcaatg
     3961 gtaaagaaca gaaagccgac ggcaatcgcc ttatacatca cctcgtcgat caatgccgac
     4021 ggcggcagcc acagttttcc gccttttcct tccgcacgca gggaaaccag ttcggcaata
     4081 ccgagcatcg cggaaatgca aaacgcgccg taaccgataa agtttgccgg aacgtggatt
     4141 ttcatccacc aggactggag cgcgggaatc agcggctgga tggtatgcgc ctcgcgggac
     4201 acgctgtacc acaagacaaa tccaaccacg accgccataa agccgaacac gaagccgccc
     4261 aatttctgta tggcgaactt accttcataa taaagataca tcagcgcggt aatcaccaaa
     4321 aacaggatga acacttcata caggttggaa accggaatat gccccgcatc gggacggagc
     4381 agatagcttt cgtgccaacg taccagcaga ccggtaaagc ctgctacggc agacacccat
     4441 gcaaacacgg ttcccatacc caacagcgtg ttggtcggca cattttttac gcttgccaaa
     4501 accgcgcccg aaatataggc gaacagggcg aagaagacaa aggcgcactg ccacatgatc
     4561 gccgactggc tgctgaggaa ataccgcaac aggaaaatct ctgccgattt gatgttgccg
     4621 ccatacaaac cgacggcggc ataggcaagc aatacgctta aaggaacaaa ccagcgcatc
     4681 ggtttgaaaa accaacccaa aaacacggca ataccggcac ttgcccacaa catgaccgtt
     4741 tcgtaaatgt ccatatgcat accggaacgg gtctgtacga aaaccgtagc cgcaaaaacc
     4801 agcacggcaa atacccaatc ccaaagattc agattgctga tcaaagactt ctgaatcagc
     4861 agctcgtgtt ccggaagggt tttatagtgt tcagtcatga ttcaagtcct tgccgagccg
     4921 ttgcagactc tcgacgtgtt ttggaaattc cttctgcaaa tcccgttcgc tgcgggccga
     4981 agacatggca aaacggattt tgccgtctga aaacaatacc cacgcccgtt tttcgcgcac
     5041 ataaaacatc aataccgtac ccaataccaa cagcaccgag ccgagataga ccaaaagcgc
     5101 acccggggaa cgggtcatct gcaaacccga cgaacgcacc tcggaaaacc catcaagttg
     5161 cagcagcata ggcgcgggat attcggtcaa acccgtgtac gcatccatac tgtgcagcag
     5221 gaaacggttc cgcgcttcat cctgctgcca ttcgggcaag ccgtaccggc gtatggtttc
     5281 atccaaagca gcgttcatca cgccgtaaag catttcgtag aaataaccct gcatcttatc
     5341 ctgctgctct ttcgggatat tggacgtaat aaattcgtcc aatcccaaat agcctttttg
     5401 tgcaaagatg ttcagcgtgt tttccgcagc cagcatgaat tgttcgcgga tttcggcagg
     5461 tgcgtctttg gttgcgtcgg caaccagacg tttgcgccct tccccatctt tcaaaaactc
     5521 acgcaatgcc ataaaggtgt ccgctttcaa ctgcttgtcc aaggggatac gcagccagcg
     5581 gtattgctgc tgcaagccgc tgcgcgtgcc ggtaatccaa aaataatcct gttcctgcaa
     5641 aaccggcagc atatagtttt tatattcgac cgcctgccct gccgcatcac ggatacggta
     5701 aacaatggaa gggccgatat tggtgtattt tttaccttcc tgagtaacgg cgcggacatc
     5761 gttcagcgtg gatttcaggc ttttttcccg ttccgcgccc tcgctcatgt cctccacatt
     5821 catagaagtg aactgatcga actcaagacg atatttgtgt ttgccaattt ccaacggaaa
     5881 ctggtgtatg gatgttgcct tcaacacgac aggctcgcgc gaagcatcac ccaaattcca
     5941 cgccttgaat gtcaaatccg aaccgccgtc ggcaaaactc gcctgataaa tcgtgatgcc
     6001 gtgcaaggtc aaaggatggt tcacgcggat ggtgcgctcg agtttctcac cggttgcctt
     6061 atccgttact tcaatatcac tggcaaaatc gcgcggcata cccgtattgt aaaaatcgat
     6121 atggaatttt ttcagtttga cttcaaaagg caagtcctga accaatatcc cgttgtcggc
     6181 attcaggaaa accacatccg cactctgccc ctcggaaata ttgacgttgc ccctaaatga
     6241 gagattggac gcactcaaaa tactttcggg cttgaaatcc ttggcataaa ccgcctgatt
     6301 gtccggaaca atccgaccgg tcagcatacc cagtttcaac agcaggttac tgtctatcaa
     6361 cccgcccagg caaatgacaa tcaaagcaac atgggcaaag atatagcccc atttgttcat
     6421 cgtgcctttt ttggcggcaa tcagaaccga cccgccctca cggctgacgg tttttccctg
     6481 aaaaccctgc acctccagat aacgtttggc aacctcgggc gcaattttta catccaacag
     6541 cgaagaatgg cgcatcgccg ccagagattt ttctttaacc ttttcccgaa aagacttcat
     6601 ttcgcgccag aacggcggca cattgcgaat caggcacaaa ctggtagaaa ccaccaaaaa
     6661 catcatgata acgacaaacc atgccgaagc atagacgtca tacagtccca gaaaaccaaa
     6721 aatctgcgcc caaaaaggtc cgaatttgac caaataatcc gtctgcggct ggttttgctg
     6781 caacaccgta ccgataaccg atgcaatacc cagcagactg agcaaagcga ctgcaaagcg
     6841 catggagctg aaaaaagcga accacggacg ggaaagaagt gggggagatc tacgggattt
     6901 actcattgtg tgtttattcc gccatcagga atatgggaaa gcagaattgg gcaaacagaa
     6961 aacaacgtcc cgattctact gtcttgatgc tttttatttc aagacaatga agacagcctg
     7021 catcgattcc aacggttgcg attgaaaaaa cttatcgcag aattgcctga agccgtctga
     7081 aaacttttca gacggcctct aaaacagact attgcggaat taacgcaaac cttggataaa
     7141 gttggcgacc gctttcaaat cttcttcaga catacggttt gcaatatctt ccatgatggt
     7201 atttttacgc tgaccggact tgtaggcatt catctgttca acaatatatg cctgatgctg
     7261 accgcccaaa cgcggataag cctgaatttc gcttccgcct cccggcatac ccgcaccgct
     7321 cggaccgtgg caggacatac acgccggcac ttttttatcg ctcaaaccgc cgcgatagat
     7381 tttcgcaccc aattcgggat tttccttagg attggcttca ccggatttgg gctgctgttt
     7441 ggcatagaat gcggatacgt tcaaaatatc ctgatcgctc aaattcatta ccaccggttt
     7501 catcacagct gccgaaccgt gggtgcgttt accgtcgcgg atgccgatag tttgatgata
     7561 gatgtaagca gtatgctgtg ccgccaaacg cggatacatc gcaatgccgc tgttaccgtc
     7621 tgctgcatgg caagccgcac aaaccgttgc ggcaacctgt ttgccttttt ccacgtctgc
     7681 tttgggagag gcggaaaccg caccggcagc caaaacaaag gccaataaag tcaatcgttt
     7741 catggagtgc tcctgattac agcattggat aacgcaacaa tgctcttttt atattcaaat
     7801 acgggatttt tgacccgatt aaaaccgatg attctgtaaa cgtgttattc tatactaaat
     7861 ttacattaaa ttaccactgt gtttcacata aaaccaaccg catatttttg ctgtcggaca
     7921 aacggcggcg gaaaacaagg atatgcccat gaaccttttt caaaacgcca aattcttcac
     7981 gacggtaaac catctcaaag acctgccgga cacaccgctc gaaattgcct ttgtcggcag
     8041 gagcaatgcc ggaaaatcca gtgccatcaa taccctgacc aaccatgtcc gtcttgccta
     8101 cgtttcaaaa acacccggac ggacgcagca tatcaacttc ttcgagctgc agaacggcaa
     8161 ttttatggtc gatttgcccg gctacggtta tgcccaagtc cccgaagcag tacgcgcaca
     8221 ttgggtcaat ctgctcggcg actatctgca acagcgcaaa cagcttatcg ggctggtttt
     8281 gattatggat gcccgccatc ctttaaaaga actcgacatc cgtatgctgg actttttcca
     8341 cacgaccggc agaccggttc acatcctgct gtcaaaagcc gacaaattat ccaaaaacga
     8401 acagataaaa accctgtccc aagtcaaaaa actgctcaaa ccttattccg acaggcaaaa
     8461 catcagcgta cagctgtttt ccagcctgaa aaaacaaggt attgacgagg ccaaccgaac
     8521 tgtcggaagc tggtttgacg cagcagatgc cgccgcttcc tctccagagg aaaactgacc
     8581 ccaattatac ggaaaccgta tttcccccac ttgaccgacc gcaaacattt aaaaaattgc
     8641 cactgccaaa tctaaaatgc cgtctgaaag acttttcaga cggcattttg cggagtcttt
     8701 aaaacagaga atccaactgc tgctgtttgg aaccagtatt actcggaagc accggcgttt
     8761 cctgcatatc ttggcggact tcgtcatccg ccgcctgccg tccgccttct gccgcgcccc
     8821 cgtcatcttc ttttgcccgt cgggaaggtt gcggcgcaat accgctgttg tccagcgtca
     8881 agcccggatc ggttaccata cgttccttca tatagtattc gccattgctg ctgaccacac
     8941 cttcaggcat tttcatcccc ttgccctgct ttcctttcaa cgcaaaacgc atatagtcca
     9001 cccaaaccgg caccgcaatc gtaccgccgt agccgacacg ccccatactc ttaggtttgt
     9061 cgaagccgat atatacggca gtaaccacat cagggttaaa accgacaaac cacgcatcct
     9121 tattgtcatt ggtcgtaccc gttttaccgg caatatccgt tcttcccaac gcagctgccc
     9181 cccttgccgt accaacacgg accacatcct gcataatctt atacataata taggcattgc
     9241 gcggatcgat tgcctgaggc gcattttgcc cggccaccaa aggttgcatt tgggcgcgca
     9301 acctgccgtc tctgtcataa atcttatcga ttacgtgcga agaaacccta tatccgccgt
     9361 tcgcaaatac gctatatgcc tccgccactt tcaacggcgt tgtctcgccc gtacctaaag
     9421 ccatagacag gcttgccggc agctcggacg acctgaagcc gaaacgccgg atatactgtt
     9481 gcgcgtaacc gacaccgata gacatcaaaa tacggatgga aaccatattc ttggaagccg
     9541 tcagagcctg tctcaaagta atgtagccgg aatatctgcc gtctgaattt ttaggtgtcc
     9601 agaccgaacc gttcggccct ttccccggca gggaaatcgg cgcatcgtta accactgtgg
     9661 acgcggtcat ccccttagat aatgccgccg aatagacaaa cggcttaaag gtcgaacccg
     9721 gctgccgcat tgcctgaacg gcacgattga atgttttgct gtgaaaatca taaccgccga
     9781 ccagcgcgcg cacagctccg gtttttgcat ccagcgaaac caaagccccc tgcagcaacg
     9841 gctcttgaac caccgcccaa cgcccgccgt tgtttttgac acggatgacc gcgcccctgc
     9901 ggatacggtc ctcccccatt ttttcattat tgaccgcgcg ggccgcaaag cccaaggcgc
     9961 gcctatcaag cgtaacccgc ctgccgccgg gcagctgtat gacgacattt ttctttttag
    10021 tcacatccaa cacaacggcg ggaaccattt tatcgacggt atagagtccc gacagatact
    10081 ggctgacagt ctcctcgaca tcttcactct tactcaaatc gatatagttt tccgcaccgc
    10141 ggtagctgct gccgcgatcg aaattccgta gagccttgcg caatgcctcg gttgccacct
    10201 tctgatgatc ggcgcggacc gtggtataaa ccttaaaacc ctgcgtatag gcatcttcac
    10261 cgtatttctc atacagttcc tgacgcacca tttccgccac atataaagca ctctgatcga
    10321 ttttccgaac aaaccgctcg taatgcagtt cctcattcaa cgcctgatcg cgctgttgca
    10381 cggtaatcat cttctcctcg agcatattgt tcaaaatata cttctggcgc aacttggcac
    10441 gttctggatt aacaatcgga ttataggcag acggagcctt gggcagtccc gcaagcatgg
    10501 cggcttccgc caaagtcaaa tctcggacat tcttattgaa atagatttgc gcggcagatg
    10561 caaaaccata ggcgcgctga ccgaggtaaa tctgattgaa atacaactcg aggattttgt
    10621 ctttgcttaa agactgctcg attttatagg caagcaacac ctcattgaat ttgcgtgtga
    10681 acgttttttc actgctcaaa taaaaatttt tcgccacctg ctgcgtaatc gtactcgcac
    10741 ccgactgcac gctgccggac acgacattgc cgacggcagc gcgggcaaca ccccaaacat
    10801 ccacccccca atgccggtaa aagcgtttat cctcggcggc gataaccgca ttccgcaaca
    10861 cctctgggaa atcgccgatt tttgtaaatt cgcgccgctg ctccccatac ataccgatga
    10921 cttccccatc cgccgaataa atagtcaacg gcattttagg ctggtaatgc tgcaaagaat
    10981 ccaaagacgg cagtttcgga tacgttacca aaatagcaat ggcaaccaaa cccactccaa
    11041 atacacaaaa cccaaaaacc aaaccaaaac aagtcgttaa aatcttttta atcatagctg
    11101 aataataatt taccattatt ggtattaaat aaagtaaaat agcaaccgat ttctacaaag
    11161 cacggtttca atgtgcaaag aacaaggaat ccattacgga taccgaaacg gttactcact
    11221 gtacaaataa agcaggaact ttcatcatgc gcttgtttaa aagcttgaaa aaccctaaaa
    11281 aaacagatgc caagctccct aaaaaatctt cgggactcaa taaccgcgcg gcaatcggca
    11341 tcgatatcga ccagcattcc atcaaaatgg tccaattgtc aggacgtagt ttaaaccaaa
    11401 ttcaattgga aaaatacgtc attgccaaat taccaaagaa tatcattcaa ggcaataaag
    11461 tccaaaatta cgatcaactt gttacatatt tgcaacaagc ctatgccaaa ctgggtactt
    11521 cgtgcaaaaa catcatcgcg tccgtcccgc aaaatctggc aaccatcgaa caattgacct
    11581 acacagacaa agatgcagaa ttagacctgc aggggttcgt ggagtcctcc atctccgaag
    11641 tcagctcgat atcgctcgaa gaagccaatt acgactatca ggtcttgtcc caatcggccg
    11701 ccggcgaagc tgtgttggcc gtcgcatcga gaaaggatga aatcgaaccc ctgattgacg
    11761 cattcaacgc cgccggtatg aaattatccg cgcttgatgt ggacattttc ggacaataca
    11821 acgcctacgc gctatggata aaccatttcg cccccgagct tgcagccgaa aaagtcgcca
    11881 ttttcggcgt atatgccgca cagacctacg ccttggtcat ccaagacgga aaaatcctat
    11941 acaaacagga aacctccgtc agcgaagaac agctcaacca actcatccag cgcacctatc
    12001 aggtaacaga agaaaaagcg gaagaaatca tcaactcccc gcaaaaacct tccgattacc
    12061 aagaaagcgt ggcaaactat ttcaaccagc agattaccca agaaatacaa agggtcttgc
    12121 agttttatta caccacgcag accgcagacg atatgaccga catcaagcat atcctgctga
    12181 ccggggaagc ggcgcgccag gaaggtatcg cccaaaccgt cgcctcacaa accaatgcag
    12241 atgtacaatg cgtccatccc gcgcgttatt ttgcggacaa cctcaaaaca gacaaacaac
    12301 aattcgaact tgatgcgccg acactgacca gggcgttcgg tttggcggta cggggattat
    12361 aattatgaac aatttaatca aaatcaacct cctcccctac agggaagaga tgaacaagcg
    12421 caaacagcag cagtttaaaa cgctgatgta cggtgccgtg ctgacgggcg ttgccgccgt
    12481 tgcggcaacc tacctgttta tcgacaatat gatcaataac cagtcggaaa gaaacacgct
    12541 gctggaaacc tccatcgcac acttggatac cgagctgtcg gaaatacaaa agctcaaaca
    12601 ggaaaaagat gccttcctga ttaagaaaaa caaaatcgag gagctccagc tcaaacgcct
    12661 ccaagccgca aaaatcctcg acagcctgaa tgaggccgtc cccggaagca cctacctgac
    12721 ctcgctggat gccgttaccg ccgactctta tcggctcagc ggcaggacat ccagcgacaa
    12781 ccgcgttgcc gccatgatga gggcgatgcc caataccggc atattcaagc aacccgaatt
    12841 gttaagcatc aagaaaaaca attcgcatca agaatttacc cttcaggcaa cattacaacc
    12901 catcgtaaag gcggccgaat ccaaagagaa tccggcttcg ggaaacgcac aggaggcaaa
    12961 ctgaatggct tctaaatcat ctaaaaccaa cttggatctc aacaaccttc acctgctcaa
    13021 ccttcctgcc aggcttttta tcgccctgct ggccgttgcc gccgtgctgg ggctcggtta
    13081 tgccggattg ttcaaaagcc agatggaatc ccttgaggaa tacgaagcaa aagaaaccga
    13141 actgaaaaac acctacaaac agaaaagtat cgacgcggcc agcctgaaca acctgaggga
    13201 cgaacttgcc tcaatccgct ctgccttcga tatcatgttg aaacagctgc cgacagatgc
    13261 agaaattccc aacctggttc aagagcttca tcaggcaggt tcgagcaacg gcctgcgctt
    13321 ggacagcgtt atgccccaac ctcccgtaga tgacggcccc atcaaaagat taccctattc
    13381 catttccatt accggaaatt acgaacagat cagccaattt acccgcgatg tcggcagcct
    13441 ctcccgaatc attacccttg agtcgctgaa aatcgcccaa tctccggaaa acggcggcaa
    13501 tcctgacggc aagagcagca tcctgaacct cagtgccatt gccaccacct accaagcaaa
    13561 atccgtagaa gagcttgccg cagaagcggc acaaaatgcc gagcaaaaat aacttacgtt
    13621 agggaaacca tgaaacacta tgccttactc atcagctttc tggctctctc cgcgtgttcc
    13681 caaggttctg aggacctaaa cgaatggatg gcacaaacgc gacgcgaagc caaagcagaa
    13741 atcatacctt tccaagcacc taccctgccg gttgcgccgg tatacagccc gccgcagctt
    13801 acagggccga acgcattcga cttccgccgc atggaaaccg acaaaaaagg ggaaaatgcc
    13861 cccgacacca agcgtattaa agaaacgctg gaaaaattca gtttggaaaa tatgcgttat
    13921 gtcggcattt tgaagtctgg acagaaagtc tccggcttca tcgaggctga aggttatgtc
    13981 tacactgtcg gtgtcggcaa ctatttggga caaaactacg gtagaatcga aagcattacc
    14041 gacgacagca tcgtcctgaa cgagctgata gaagacagca cgggcaactg ggtttcccgt
    14101 aaagcagaac tgctgttgaa ttcttccgac aaaaacaccg aacaagcggc agcacctgcc
    14161 gcagaacaaa attaagaaga ggattactcc attatgaata ccaaactgac aaaaatcatt
    14221 tccggtctct ttgtcgcaac cgccgccttt cagacagcat cggcaggaaa cattacagac
    14281 atcaaagttt cctccctgcc caacaaacag aaaatcgtca aagtcagctt tgacaaagag
    14341 attgtcaacc cgaccggctt cgtaacctcc tcaccggccc gcatcgcctt ggactttgaa
    14401 caaaccggca tttccatgga tcaacaggta ctcgaatatg ccgatcccct gttgagcaaa
    14461 atcagtgccg cacaaaacag cagccgtgcg cgtctggttc tgaatctgaa caaaccgggc
    14521 caatacaata ccgaagtacg cgggaacaaa gtttggatat tcattaacga atcggacgat
    14581 accgtgtccg cccccgcacg ccccgccgta aaagccgcgc ctgccgcacc ggcaaaacaa
    14641 caggctaccg caccgtctac caagtccgca gtatccgtat ccaaaccctt taccccggca
    14701 aaacaacagg ctgccgcacc gtttaccgag tccgtagtat ccgtatccgc accgttcagc
    14761 ccggcaaaac aacaggcggc ggcatcagca aaacaacaga cggcagcacc agcaaaacaa
    14821 caggcggcag caccagcaaa acaaaccaat atcgatttcc gcaaagacgg caaaaatgcc
    14881 ggcattatcg aattggctgc attgggcttt gccgggcagc ccgacatcag ccaacagcac
    14941 gaccacatca tcgttacgct gaaaaaccat accctgccga ccacgctcca acgcagtttg
    15001 gatgtggcag actttaaaac accggttcaa aaggttacgc tgaaacgcct caataacgac
    15061 acccagctga ttatcacaac agccggcaac tgggaactcg tcaacaaatc cgccgcgccc
    15121 ggatacttta ccttccaagt cctgccgaaa aaacaaaacc tcgagtcagg cggcgtgaac
    15181 aatgcgccca aaaccttcac aggccggaaa atctcccttg acttccaaga tgtcgaaatc
    15241 cgcaccatcc tgcagatttt ggcaaaagaa tccgggatga acattgttgc cagcgactcc
    15301 gtcaacggca aaatgaccct ctccctcaaa gacgtacctt gggatcaggc tttggatttg
    15361 gttatgcagg cacgcaacct cgatatgcgc cagcaaggga acatcgtcaa catcgcgccc
    15421 cgcgacgagc tgcttgccaa agacaaagcc ttcttacagg cggaaaaaga cattgccgat
    15481 ctgggcgcgc tgtattcaca aaacttccaa ttgaaataca aaaatgtgga agaattccgc
    15541 agcatcctgc gtttgggcaa tgccgacacg accggaaacc gcaatacgct tgtcagcggc
    15601 aggggcagcg tgctgatcga tcccgccacc aataccctga ttgttaccga tacccgcagc
    15661 gtcatcgaaa aattccgcaa actgattgac gaattggacg tacccgcgca acaagtgatg
    15721 attgaggcgc gtatcgtcga agcggcagac ggcttctcgc gcgatttggg cgttaaattc
    15781 ggcgcgacag gcaagaaaaa gctgaaaaat gatacaagcg cattcggctg gggggtaaac
    15841 tccggcttcg gcggcgacga taaatggggg gccgaaacca aaatcaacct gccgattacc
    15901 gctgccgcaa acagcatttc gctggtgcgc gcgatttcct ccggtgcctt gaatttggaa
    15961 ttgtccgcat ccgaatcgct ttcaaaaacc aaaacgcttg ccaatccgcg cgtgctgacc
    16021 caaaaccgca aagaggccaa aatcgaatct ggttacgaaa ttcctttcac cgtaacctca
    16081 atcgcgaacg gcggcagcag cacgaacacg gaactcaaaa aagccgtctt ggggctgacc
    16141 gttacgccga acatcacgcc cgacggccaa atcattatga ccgtcaaaat caacaaggac
    16201 tcgcctgcgc aatgtgcctc cggtaatcag acgattctgt gtatttcgac caaaaacctg
    16261 aatacgcagg ctatggttga aaacggcggc acattgattg tcggcggtat ttatgaagaa
    16321 gacaacggta atacgctgac caaagtcccc ctgttgggcg acatccccgt tatcggcaac
    16381 ctctttaaaa cacgcgggaa aaaaaccgac cgccgcgaac tgctgatttt cattaccccg
    16441 aggattatgg gtacggccgg caacagcctg cgctattgat gcgtcaaaat aagggcatat
    16501 gttttacggc atatgccctt tctttatgct ttttgccgcg accgaaatgc cgtcattccc
    16561 gcgcaggcgg gaatccaact tgtccggttt cggttgtttt tcgtctcgta acttttgagc
    16621 cgtcattccc gcgaaagcgg aaatccaatc c
//
LOCUS       DAXHPV010000028        16446 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.028, whole genome shotgun sequence.
ACCESSION   DAXHPV010000028 DAXHPV010000000
VERSION     DAXHPV010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16446
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.028"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..327
                     /locus_tag="ACFM6C_000681"
     CDS             <1..327
                     /locus_tag="ACFM6C_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-fructose-6-phosphate
                     aminotransferase"
                     /protein_id="HFC6158172.1"
                     /translation="TEEGIAQTVVKGKTTRAEVEARFGKRNPFGCYAYHEVSLPIYNF
                     LPTNFIYMKSERRHWEWCVDYDGEGVVRDYRFTHKVEKDERSVIRDAVGVIRKEAGKS
                     LSQPEK"
     gene            391..1674
                     /gene="hemL"
                     /locus_tag="ACFM6C_000682"
     CDS             391..1674
                     /gene="hemL"
                     /locus_tag="ACFM6C_000682"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HFC6158173.1"
                     /translation="MNRNEILFDRAKATIPGGVNSPVRAFGSVGGVPRFIKKAEGAYV
                     WDENGTRYTDYVGSWGPAIVGHAHPEVVEAVREAALGGLSFGAPTEGEIAIAEQIAKI
                     MPSVERLRLVSSGTEATMTAIRLARGFTGRDKIIKFEGCYHGHSDSLLVKAGSGLLTF
                     GNPSSAGVPADFTKHTLVLEYNNIAQLEEAFAQSGNDIACVILEPFVGNMNLVRPTEA
                     FVKALRELTEKHGAVLIYDEVMTGFRVALGGAQSLHGIMPDLTTMGKVIGGGMPLAAF
                     GGRKDIMECISPLGGVYQAGTLSGNPIAVAAGLKTLEIIQREGFYENLTARTEQLVQG
                     FQTAADAAGIEFTADSVGGMFGLYFAAHAPRNYADMARSNIEGFKQFFHGMLDRNVAF
                     GPSAYEAGFVSAAHTPVLIDETVAVAVEVFKAMAA"
     gene            complement(1927..2490)
                     /gene="orn"
                     /locus_tag="ACFM6C_000683"
     CDS             complement(1927..2490)
                     /gene="orn"
                     /locus_tag="ACFM6C_000683"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000175 - 3'-5'-RNA exonuclease activity
                     [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HFC6158174.1"
                     /translation="MQDKNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEV
                     YAIHQSDELLDNMDEWNTATHGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVSGRATP
                     MCGNSIHQDRRFMVKYMPKLENYFHYRNLDVSTLKELAKRWNPPVAKSVVKRGSHKAL
                     DDILESIEEMRHYREHFLISAPRAEAQ"
     gene            complement(2508..3395)
                     /gene="prmA"
                     /locus_tag="ACFM6C_000684"
     CDS             complement(2508..3395)
                     /gene="prmA"
                     /locus_tag="ACFM6C_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HFC6158175.1"
                     /translation="MPYQQITVNVNDAVAERLADALMEHGALSATIEDAYAGTQNEQA
                     IFGEPGMPAEQIWQQSKVIALFGEHDEAAAIIQIAAQECGLKDLAYTGETIEDQDWVR
                     LTQSQFDPIRISDRLWITPSWHEAPEGTAVNLRLDPGLAFGTGSHPTTRLCLKWLDTQ
                     LKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAIRASKDNAEQNNVDAQFFLP
                     DGLPQGQFDVVVANILANPLRMLGEMLAARTKQGGRIVLSGLLDEQIEELSGIYSQWF
                     DLDPAETEEGWARLSGTKR"
     gene            complement(3513..4874)
                     /gene="accC"
                     /locus_tag="ACFM6C_000685"
     CDS             complement(3513..4874)
                     /gene="accC"
                     /locus_tag="ACFM6C_000685"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0004075 - biotin carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HFC6158176.1"
                     /translation="MLKKVLIANRGEIALRVLRACREMGIATVAVHSEADKDSLHVKL
                     ADESVCIGPAASAQSYLNVPAIIAAAEVSCADAVHPGYGFLAENADFAEQVEQSGFTF
                     IGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGSDGALPDDGEEILKIADKIGYPVIIKA
                     SGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPRHVEIQVIADE
                     HGNAVYLAERDCSLQRRHQKVIEEAPAPFITEEERAKIGNACADACKRIGYRGAGTFE
                     FLYEDGEFFFIEMNTRVQVEHPVTELITGVDIVQEQLRIASGLPLQYKQKDIKIEGHA
                     FECRINAEDPYNFIPSPGPIESCHLPGGFGIRVDSHIYQGYRIPPYYDSLIGKICVHG
                     KTREQAMAKMRVALAELAVTGIKTNTPLHRDLFADAGFQKGGVSIHYLEHWLEDRKAK
                     QDK"
     gene            complement(4987..5448)
                     /gene="accB"
                     /locus_tag="ACFM6C_000686"
     CDS             complement(4987..5448)
                     /gene="accB"
                     /locus_tag="ACFM6C_000686"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HFC6158177.1"
                     /translation="MDLRKLKKLIDLVEESGIAEIEVTEGEEKVRITRTIAAAAAPVY
                     AAPVPAAAPAVTPAAAPVAASAPAAAPAARDLSDAQKSPMVGTFYRAPGPNAAPFVEV
                     GQQVKAGDTLCIIEAMKLMNEIEAEKSGTVKEILVENGTPVEFGEPLFIIG"
     gene            complement(5430..5687)
                     /locus_tag="ACFM6C_000687"
     CDS             complement(5430..5687)
                     /locus_tag="ACFM6C_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase"
                     /protein_id="HFC6158178.1"
                     /translation="MRKIKLPAHFPQKPPFFDILLDIYRQLRENKHILTVVFHHRKTV
                     SEHHSARFAPLPQAGCFLKNQRNNPPEHRQPLKEQKWICAN"
     gene            5804..6844
                     /gene="queA"
                     /locus_tag="ACFM6C_000688"
     CDS             5804..6844
                     /gene="queA"
                     /locus_tag="ACFM6C_000688"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HFC6158179.1"
                     /translation="MDISDFDFTLPEHLIAQHPPEVRGSSHLLVALPDMPLQDRVFGD
                     LPDYVEAGDVLVFNNTKVMKARLFGQKDSGGRIEALIERVLDNHTALAHIRSSKSPKP
                     GMGLVFEGGIRAVTVGREGELFCLRFEGGQTVYELLEQNGHLPLPPYIERAADADDDS
                     RYQTVYAKYQGAVAAPTAGLHFTEELLRRLKDKGAVTAEVTLHVGAGTFQPVRVEKIE
                     EHKMHSEWFEVPSETAAAVEAAKARGNKVWAVGTTSMRALESAARATGRLKAGQGDTD
                     IFITPGYRFNVVDRLVTNFHLPKSTLLMLVSAFSGMGHIRAAYRYAVEREYRFFSYGD
                     AMVLGRNEGVVR"
     gene            complement(7214..7792)
                     /locus_tag="ACFM6C_000689"
     CDS             complement(7214..7792)
                     /locus_tag="ACFM6C_000689"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008753 - NADPH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HFC6158180.1"
                     /translation="MNILLLDGGKAFGHSHGGLNRTLHKKAKEVLTALGHNVQETVID
                     AGYDVEAEIEKFVWMDAVIWQMPGWWMHEPWTVKKYIDEVLTAGHGKLYQSDGRHRVN
                     PTEGYGTGGLLQGKKHMLSLTWNAPIEAFTREGDFFEGKGVDVLYMHFHKANEFLGMT
                     RLPTFLCNDVVKNPQVEKYLADYQAHLEKVFG"
     gene            8031..8930
                     /gene="crgA"
                     /locus_tag="ACFM6C_000690"
     CDS             8031..8930
                     /gene="crgA"
                     /locus_tag="ACFM6C_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_151940473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator CrgA"
                     /protein_id="HFC6158181.1"
                     /translation="MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEK
                     LGVNLLNRTTRQLSLTEEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMP
                     MVLHLLAPLAAKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGELDDSGLRARHLF
                     DSRFRVIASPEYLAKHGTPQSAEELAGHQCLGFTEPGSLNTWAVLDAQGNPYKISPHF
                     TASSGEILRSLCLSGCGIACLSDFLVDNDIAEGKLIPLLAEQTSNKTHPFNAVYYSDK
                     AVNLRLRVFLDFLVEELGNNLCG"
     gene            complement(9157..12372)
                     /gene="carB"
                     /locus_tag="ACFM6C_000691"
     CDS             complement(9157..12372)
                     /gene="carB"
                     /locus_tag="ACFM6C_000691"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HFC6158182.1"
                     /translation="MPKRTDLKSILIIGAGPIVIGQACEFDYSGAQACKALREEGYKV
                     ILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILPTMGGQTALNCALDL
                     ARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFVCHTMNEALAAQE
                     QVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQSVLGWKEYEM
                     EVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIG
                     VDTGGSNVQFAVNPENGEMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGFTLDE
                     LRNDITGGKTPASFEPSIDYVVTKIPRFAFEKFPAADDRLTTQMKSVGEVMAMGRTIQ
                     ESFQKALRGLETGLCGFNPRSSDKAEIRRELANPGPERMLFVADAFRAGFTLEEIHEI
                     CAIDPWFLAQIEDLMKEEKAVSDGILSDLDFAALRRLKRKGFSDKRLAQLLNVSEKEV
                     REHRYALKLHPVYKRVDTCAAEFATETAYLYSTYEEECESRPSDRKKVMILGGGPNRI
                     GQGIEFDYCCVHAALALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIV
                     RTENPWGVIVHYGGQTPLKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLR
                     QPPNRIAHNEEEALVKAEEIGYPLVVRPSYVLGGRAMQIVHSAEELQKYMREAVQVSE
                     DSPVLLDFFLNNAIEVDVDCVSDGKDVVIGGIMQHVEQAGIHSGDSGCSLPPYSLSEE
                     IQDEIRRQTKAMAYALGVVGLMNVQFAVQDGVVFVLEVNPRASRTVPFVSKATGVPLA
                     KVGARCMAGISLKEQGVEKEVVPDFYAVKEAVFPFIKFPGVDTILGPEMRSTGEVMGV
                     GASFGEAYYKAQLGAGERLNPTGKIFLSVREEDKERVIKTAKNFQVLGYGICATRGTA
                     QYLTEHGLIVQTINKVPEGRPHIGDALKNGEIALVVNTVSSDPQSVSDSHIIRQSALQ
                     QRVPQYTTTAGGEAMSEGAKSRDHLGVYSVQELHGRLKNRS"
     gene            complement(12401..13042)
                     /locus_tag="ACFM6C_000692"
     CDS             complement(12401..13042)
                     /locus_tag="ACFM6C_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6037 family protein"
                     /protein_id="HFC6158183.1"
                     /translation="MSIPINFNNLKYLLNDMRNKNRIIEAFPFNYNQRQYAVILTRYK
                     PDEPRPDDYAQAKLEFFNLNSENSIFAYADFYEVHFKSATDFINFFKINVQAGAAKIR
                     EIFQSFSNLFADFIPTQTKKDLDIIYKKIVATRLEPNSPNTIYCYDVRRNGKDKAGKP
                     NRRSVENSEKAKILRPELYEKFKADSNYSFFFSDNPSDEKTDAEIIREVTNRQ"
     gene            complement(13721..14110)
                     /locus_tag="ACFM6C_000693"
     CDS             complement(13721..14110)
                     /locus_tag="ACFM6C_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF559 domain-containing protein"
                     /protein_id="HFC6158184.1"
                     /translation="MNPHEKLLTTDNPILRQRAKAMRQEMSEAEAKLWQHLRASRLNG
                     YKFRRQQPMGNYIVDFMCVTPKLIVEADGGQHAEQAVYDHARTAYLNSLGFTVLRFWN
                     HEILQQTNDVLAEILRVLQELEKQYAQ"
     gene            complement(14683..14808)
                     /locus_tag="ACFM6C_000694"
                     /pseudo
     CDS             complement(14683..14808)
                     /locus_tag="ACFM6C_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687733.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
     gene            complement(14854..15987)
                     /gene="carA"
                     /locus_tag="ACFM6C_000695"
     CDS             complement(14854..15987)
                     /gene="carA"
                     /locus_tag="ACFM6C_000695"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006541 - glutamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HFC6158185.1"
                     /translation="MSTPALLVLADGSVFHGTSIGYEGSTSGEVVFNTSMTGYQEILT
                     DPSYCKQIVTLTYPHIGNTGTNAEDEESRSVYASGLIIRDLPLLHSNFRASESLHDYL
                     VRNQTVAIADIDTRRLTTLLREKGAQGGAILTGADATIEKAQELIAAFGSMVGKDLAK
                     EVSCTETYEWTEGEWELGKGFVTPDEQPYHVVAYDFGVKTNILRMLASRGCRLTVVPA
                     QTSAQDVLALNPDGVFLSNGPGDPEPCTYAIEAVQKLMESGKPIFGICLGHQLISLAI
                     GAKTLKMRFSHHGANHPVQDLDSGKVVITSQNHGFAVDADTLPANARITHKSLFDNTL
                     QGIELTDKPVFCFQGHPEASPGPQDVGYLFDKFIGNMKAAKRA"
BASE COUNT         3537 a         4173 c         4586 g         4150 t
ORIGIN      
        1 acggaagagg gaatcgcaca aacggttgtt aaaggcaaaa cgacccgggc ggaggtagag
       61 gcacgtttcg ggaagcgcaa ccctttcggt tgttatgcct atcacgaggt cagcctgccg
      121 atttataatt ttttgccgac caatttcatt tatatgaaat cagaacgccg gcattgggag
      181 tggtgtgtgg attacgacgg ggagggagtc gtccgggact accgctttac acataaagtg
      241 gaaaaagacg agcgttccgt catccgggat gcggttggcg tgatccgcaa agaagcgggc
      301 aaatccttgt cgcaacctga aaaatgataa aatagctttt tctgtttcag aacctaaaac
      361 ctgcctttag gatggaattt aaggataaat atgaaccgta acgaaatttt attcgaccgc
      421 gccaaagcca ccatccccgg cggcgtgaat tcccctgtcc gcgcattcgg cagcgtcggc
      481 ggcgtgccgc gcttcatcaa aaaagccgaa ggcgcgtatg tttgggacga aaacggcacg
      541 cgttataccg actatgtcgg ctcttggggg cctgcgattg tcggacacgc gcaccccgaa
      601 gtcgtcgaag ccgtgcgcga agccgcgttg ggcggtttgt cgttcggcgc gcccaccgag
      661 ggcgaaatcg ccattgccga acaaatcgcc aaaatcatgc cgtccgtcga acggctgcgc
      721 ctcgtcagct ccggtaccga agcgacgatg accgccatcc gtttggcacg cggttttacc
      781 ggtcgcgaca aaatcatcaa gtttgaaggc tgctaccacg ggcattccga cagcctgctg
      841 gtgaaagccg gcagcggcct gctgacgttc ggcaatcctt cttccgccgg tgtgcctgcc
      901 gactttacca aacacacttt agtccttgag tacaacaaca tcgcccaatt ggaagaagcc
      961 tttgctcaaa gcggcaatga cattgcctgt gtgattttgg agccttttgt cggcaatatg
     1021 aaccttgtcc gcccgaccga agccttcgtc aaagccctgc gcgaattgac cgaaaaacac
     1081 ggcgcggtgt tgatttacga cgaagtgatg accggtttcc gcgtcgcgct cggcggcgca
     1141 caatcgctgc acggcatcat gcccgacctg accacgatgg gcaaagtcat cggcggcggt
     1201 atgccgcttg ccgcgttcgg cgggcgcaaa gacatcatgg aatgtatttc cccgctgggc
     1261 ggcgtgtatc aggcaggcac cttgtcgggc aacccgattg ccgtcgccgc aggcttgaaa
     1321 acgctggaaa tcattcagcg cgaagggttt tatgaaaacc tgacggcgcg taccgaacag
     1381 ttggttcaag gttttcagac ggcagcggat gcggcgggca tcgagttcac cgccgacagc
     1441 gtgggcggta tgttcggtct gtatttcgcc gcacacgcgc cgcgaaatta tgccgatatg
     1501 gcgcgttcca atattgaagg cttcaaacag tttttccacg ggatgctcga ccgcaatgtc
     1561 gccttcggcc cgtccgctta tgaagcaggt ttcgtttccg ccgcgcatac gccggttttg
     1621 attgatgaaa cggttgcggt tgcggttgaa gtgttcaagg cgatggctgc atgatgtttt
     1681 gacggacagg gtttctctgt tcgatttgtt tggcagattg aagtaagaat gcacaccgcc
     1741 gtcattccca cgcaggcggg aatccagacc tttcagtttc tgtaatgatt gaaaataacg
     1801 gcaggcccga ccttccggat tcccgcctgc gcgggaatga cgggcgtgta tatttttgat
     1861 ttcaatctgc tgtaaaaatg ccgtctgaaa tgcaggattt gcgcttcaga cggcattttt
     1921 tgtttcttat tgcgcttcgg ctctcggggc ggaaatcaga aagtgttcgc ggtagtggcg
     1981 catttcttcg atgctctcca aaatgtcgtc caatgccttg tgcgaaccgc gtttgacgac
     2041 gcttttggca acgggtggat tccagcgttt ggcgagttct ttcagcgtgg aaacgtcgag
     2101 gttgcggtag tggaagtagt tttccagttt cggcatatat ttgaccatga agcgccggtc
     2161 ttggtggatg gagttgccgc acatcggcgt ggcgcgtccg gatacccatt ccgacataaa
     2221 gtccagcagt ttctgttcga cttcggcttc ggtatgcgac gattcgcgca cgcgctgtgt
     2281 cagccccgtc ctaccgtgtg tggcggtgtt ccattcgtcc atattgtcga gcagctcgtc
     2341 gctttggtgg atggcgtaaa cttcggattg cgccaataca ttcaaatccg agtcggtaat
     2401 aatcatcgcg acttcgataa tgcggtcggt ttcgggatta agccccgtca tttccatatc
     2461 gagccagcat aggttgtttt tatcctgcat gatgtttcct ttgcttgtca gcgttttgtc
     2521 ccgctcagtc gcgcccatcc ttcttctgtt tccgcaggat cgagatcgaa ccattggctg
     2581 taaatgccgc tgagttcttc gatttgttcg tccaacaaac cggataacac gatgcggccg
     2641 ccttgtttgg tgcgggcggc aagcatttcg ccgagcatac gtaaagggtt ggcgaggatg
     2701 ttggcgacaa ctacgtcgaa ttgcccttga ggcaggccgt cgggcaggaa gaattgtgca
     2761 tcgacgttgt tctgttcggc gttgtccttg ctggcacgga tggcctgttc gtcaatatcg
     2821 acgccgacgg cagaacctgc gccgagtttg agggcggcga tggtcaggat gcccgaaccg
     2881 cagccgtagt cgaggacgct ttcgccgttt ttgagttgcg tatccagcca tttgaggcag
     2941 aggcgcgtgg ttgggtggct gccagtgccg aaggcgaggc cgggatcgag gcgtaggttg
     3001 acggcagtgc cttcgggggc ttcgtgccaa gagggggtaa tccacaggcg gtcggaaatt
     3061 cggatggggt cgaattgcga ttgcgtgaga cgcacccagt cttggtcttc gatggtttcg
     3121 ccggtgtatg ccaagtcttt taacccgcat tcttgtgcgg cgatttggat gatggcggcg
     3181 gcttcgtcgt gttcgccgaa cagggcgatg actttgctct gctgccagat ttgttcggcg
     3241 ggcataccgg gttcgccgaa aatcgcctgt tcgttttgcg tgccggcgta ggcatcttcg
     3301 atggtggcgg agagtgcgcc gtgttccatc agcgcgtcgg cgaggcgttc ggcgacggca
     3361 tcgttgacgt tgacggtgat ttgttggtag ggcatagcgg gctttcttaa cagaccttcg
     3421 gaatagggtc gtactgtata aggggatggg tgtgtaacgg aaatgccgtc tgaacgcgga
     3481 cgggcggctt cagacggcat atcggcggcg gtttacttgt cctgtttggc tttgcgatct
     3541 tccagccagt gttccaaata gtggatgctg acgccgcctt tttggaaacc cgcatcggcg
     3601 aacaggtcgc ggtgaagcgg cgtattggtt ttgatgccgg ttaccgccag ctcggcgagt
     3661 gcgacgcgca ttttcgccat tgcctgttca cgcgttttgc cgtgtacgca gattttgccg
     3721 atcaggctgt cgtagtacgg tgggatgcgg tagccttggt aaatgtggct gtccacgcgg
     3781 ataccgaagc caccgggcag gtggcagctt tcaatcgggc ccgggctggg gatgaagttg
     3841 tacgggtctt cagcgttgat acggcactcg aaagcgtggc cttcgatttt gatgtctttc
     3901 tgtttgtatt gcagcggcag gccggatgcg atgcggagtt gctcctgcac gatgtccacg
     3961 ccggtaatca gctcggtaac cggatgctca acctgaacgc gcgtattcat ctcgataaag
     4021 aaaaattcgc cgtcttcgta caggaattca aacgtacctg cgccacgata gccgatgcgt
     4081 ttgcaggcgt cggcacaggc gttgccgatt ttggcgcgtt cttcttcagt gatgaacgga
     4141 gccggtgctt cctcgatgac tttttggtgg cggcgttgca gcgaacagtc gcgctcggca
     4201 agatatacgg cgttgccgtg ttcgtcggca atcacttgga tttcgacgtg gcgcggacgt
     4261 tgcagatagc gttccatgta aaccatcggg ttgccgaatg ccgcgcctgc ttctgccttg
     4321 gtcatttcga cagattggag gaggtcttct tttttctcga ccacgcgcat accgcgaccg
     4381 ccgccgccgc cagaggcttt gataatgacg ggataaccga ttttatcggc gattttgagg
     4441 atttcttcgc cgtcgtcggg caatgcgccg tcagaaccgg ggacgcaggg tacgcctgcc
     4501 gctatcatcg cgtgtttggc ggagactttg tcgcccatca ggcggatggt gtcgggtttc
     4561 gggccgataa aggtaaagcc ggactgctcg acctgttcgg cgaaatcggc gttttcggca
     4621 aggaaaccgt agcctgggtg gacagcgtcc gcgcagctta cttcggcggc ggcaataatg
     4681 gcggggacgt tgaggtagct ttgcgcggaa gcggcagggc cgatgcacac ggattcgtcg
     4741 gcgagtttga cgtgcaggct gtctttgtcg gcctcggaat gcacggcgac ggtggcaatg
     4801 cccatttcgc ggcaggcacg gagtacgcgt aatgcgattt cgcctcggtt ggcgattaaa
     4861 acttttttca gcatgatgac tgttcctgtg gttccggcaa cccgtccgta aaaaaaaggt
     4921 gcgggaacgc cgaaggggga aagcatttca gacggcatcg gaagtttatg ccgtctgaaa
     4981 acaggattat ccgatgatga agagcggttc gccgaattcg acgggcgtac cgttttcgac
     5041 caaaatttct ttgaccgtgc cggatttttc ggcttcgatt tcgttcatca gcttcatcgc
     5101 ttcgatgatg cacagcgtgt cgccggcttt aacctgttgg ccgacttcga caaaaggcgc
     5161 ggcattcggg ccgggtgcgc ggtagaacgt gccgaccata ggtgattttt gcgcgtcgga
     5221 caaatcgcgg gcggcaggtg cggcggcggg cgcggatgcc gcaacgggtg cggcggcagg
     5281 cgttacggcc ggcgcggcgg caggtacggg cgcggcgtaa acgggagctg ccgcagctgc
     5341 aatggtacgg gtgatgcgga ctttttcctc gccttcggtt acttcgattt cggcgatacc
     5401 cgattcttca accaaatcaa tcagtttttt taatttgcgc aaatccattt ctgttccttt
     5461 aaaggctgcc ggtgttccgg cgggttgttg cgttggtttt tcagaaaaca gccagcttgc
     5521 ggcaacggcg caaaccgggc ggaatggtgt tcggatacgg ttttcctgtg gtggaaaaca
     5581 accgtgagaa tgtgtttatt ttcccgaagt tgtcggtaaa tgtccagtaa aatatcaaaa
     5641 aacggcggtt tttgggggaa atgtgcagga agtttgattt tgcgcacaag atgccccggg
     5701 tcaagagtgt ttattctaat ctgttggttt ttcgggcaaa gatgccgtct gaaaaagggc
     5761 taaagtgcgt ataatggcgg cttgcccgaa cgagagtgta aaaatggata tttcagattt
     5821 tgattttacc ctgcccgaac acctgattgc ccagcatccg cccgaagtgc gcggcagcag
     5881 ccaccttttg gtcgcgctgc ccgatatgcc gctgcaagac cgggtgttcg gcgatttgcc
     5941 ggattatgtc gaggcgggcg acgttttggt gttcaacaac accaaagtca tgaaggcgcg
     6001 gctgtttggg cagaaagaca gcggcggcag gatcgaagcc ctgattgagc gcgtgttgga
     6061 caaccatacc gcactggcgc acatccgttc gtccaaatcg cccaagcccg gtatggggct
     6121 ggtgtttgaa ggcggcatcc gcgccgtgac ggtcgggcgt gagggcgaac tgttctgcct
     6181 gcgttttgaa ggcggtcaaa ccgtttacga acttttggaa cagaacggac acctgcccct
     6241 gccgccttat atcgaacgcg ccgccgatgc ggacgacgac agccgttatc aaaccgttta
     6301 tgccaaatat cagggtgcgg tcgccgcgcc gacggcgggt ctgcatttta cggaagaact
     6361 tttgcgccgc ctgaaagaca aaggcgcagt aaccgcagaa gtaaccctgc acgtcggtgc
     6421 gggaacgttc cagcccgtgc gtgtggaaaa aatcgaagaa cacaaaatgc acagcgaatg
     6481 gtttgaagtg ccgtctgaaa ccgccgccgc cgttgaggcg gcaaaagcac gggggaacaa
     6541 agtctgggcg gtcggcacga cttccatgcg cgccctcgaa tctgccgcgc gtgcgacggg
     6601 tcgtctgaaa gcggggcagg gcgacaccga tattttcatc acgccgggct accgttttaa
     6661 tgttgtcgac aggctggtta ccaattttca tttgccgaaa tcgacgctgc tgatgcttgt
     6721 cagcgcgttt tcgggtatgg gtcatatccg cgccgcgtat cgttatgcgg tcgaacgcga
     6781 ataccgtttc ttcagctacg gcgatgcgat ggttttgggg cggaacgaag gggtggtacg
     6841 ttagaacagc cccaagtcta ttgggggaag acaagtgccg tctgaacgga cgttcggacg
     6901 gcattctttt gttgatttga atgaaaggaa ctgtatgaca tagattcagg cgcgagaggc
     6961 gagaaactca gtcattgttg atgacgcgca atacgttaaa attcattccg ttttggtcgt
     7021 ataaacatat tacatacgcc atttttttgt attcaaggct gcctgaaaac agtgggcaag
     7081 aatatctaac ccaacgaaaa gctgaaaaag caacaaaaaa taatctgcac cttagtcggt
     7141 tggttagtcc aaccttaggg gtgcagacca ttcaatcttt caggctgcct ttgtttgttt
     7201 ataagataaa tttttagccg aacacttttt ccaagtgtgc ctgataatct gccaagtatt
     7261 tttccacttg tggattttta accacatcgt tacataagaa tgtcggcagg cgggtcatac
     7321 ccaaaaactc gttggctttg tggaagtgca tatacaaaac atcaacgcct ttgccttcaa
     7381 agaaatcgcc ttcgcgggta aacgcctcaa tcggcgcatt ccaagtcagt gaaagcatat
     7441 gttttttgcc ttgcaacaag ccgcctgtgc cgtagccctc agtcggattg acgcggtgtc
     7501 tgccgtcgct ttggtagagt ttgccgtgtc cagcggttaa tacttcgtct atgtattttt
     7561 tcactgtcca aggctcgtgc atccaccagc ccggcatctg ccaaatcaca gcatccatcc
     7621 aaacgaattt ttcgatttct gcctcaacat catagccggc atcaatcacg gtttcttgaa
     7681 cattgtgtcc gagcgcggtc aaaacttctt tcgctttttt gtgaagcgtg cggtttaacc
     7741 cgccgtgaga atgtccgaac gctttgccgc cgtctaataa taaaatattc atttgttacc
     7801 tcgtttgtga attgatgaat gtattgtgcc gttttacttt ataatttaaa agtgcaaaaa
     7861 taagaaaaca cttttgcgtc aaatgaaata atcagatgtt ccaacacacg ggatggcaca
     7921 taaagcaccg ccctgtgtgc cgtcctgatt cggaaggggt tacacccctc ccaaataaag
     7981 tctgatcctg ccgccctaaa gggcggggtt ccaaccgaaa aggaaacacg atgaaaacca
     8041 attcagaaga actgaccgta tttgttcaag tggtggaaag cggcagcttc agccgtgcgg
     8101 cggagcagtt ggcgatggca aattctgccg taagccgcat cgtcaaacgg ctggaggaaa
     8161 agttgggtgt gaacctgctc aaccgcacca cgcggcaact cagtctgacg gaagaaggcg
     8221 cacaatattt ccgccgcgcg cagagaatcc tgcaagaaat ggcagcggcg gaaaccgaaa
     8281 tgctggcagt gcacgaaata ccgcaaggcg tgttgcgcgt ggattccgcg atgccgatgg
     8341 tgctgcatct gctggcgccg ctggcagcaa aattcaacga acgctatccg catatccgac
     8401 tttcgctcgt ttcttccgaa ggctatatca atctgattga acgcaaagtc gatattgcct
     8461 tacgggccgg agaattggac gattccgggc tgcgtgcacg ccatctgttt gacagccgct
     8521 tccgcgtaat cgccagtcct gaatacctgg caaaacacgg cacgccgcaa tctgcagaag
     8581 agcttgccgg tcaccaatgt ttaggcttca ccgaacccgg ttctctaaat acatgggcgg
     8641 ttttagatgc gcagggaaat ccctataaga tttcaccgca ctttaccgcc agcagcggtg
     8701 aaatcttacg ctcgttgtgc ctttcaggtt gcggtattgc ttgcttatca gattttttgg
     8761 ttgacaacga catcgctgaa ggaaagttaa ttcccctgct cgccgaacaa acctccaata
     8821 aaacgcaccc ctttaatgct gtttattaca gcgataaagc cgtcaacctc cgcttgcgcg
     8881 tatttttgga ttttttagtg gaggaactgg gaaacaatct ctgtggataa ttctataaaa
     8941 acctgccata aaattgtttt tactcactta ataactttga gaaaaaataa ataagatgat
     9001 gtatagtcgg cggcaatggc agtctatatg gggagcgtga tagggctgtt ccttatgtac
     9061 ggcttgtgtg tggcaacatc ggctttccaa atgacaaaat gccgtctgac accgtaaaaa
     9121 aaggtttcag acggcatttt caacccgatt caggcatcag ctgcggtttt tcaaacgccc
     9181 gtgcagttct tgaacgctgt acacgcccaa gtggtcgcgg cttttcgcgc cttcgctcat
     9241 cgcttcgccg cccgcagtag tggtgtattg cggcacacgt tgctgcaatg cgctttggcg
     9301 gatgatgtgg ctgtcggaca cggattgcgg atcgctggaa acggtattca cgaccagtgc
     9361 gatttcgccg tttttcagcg cgtcgccgat gtgcgggcgg ccttcgggga ctttattgat
     9421 ggtttgtaca atcagcccgt gttcggtcag gtattgcgcc gtgccgcgcg tggcgcagat
     9481 gccgtagcct aaaacttgga agtttttagc ggttttaatg acgcgttctt tgtcttcttc
     9541 gcgcacggag aggaagattt tgccggtcgg gttgaggcgt tcgcctgcgc cgagttgggc
     9601 tttgtagtag gcttcgccga agcttgcgcc cacgcccatc acttcgccgg tggagcgcat
     9661 ttccggtccc aaaatcgtat ccacgcccgg gaatttgatg aaggggaaca cggcctcttt
     9721 aacggcatag aaatcgggga cgacttcttt ttccacgcct tgttctttca gggaaatgcc
     9781 tgccatgcag cgcgcgccga ctttggcgag cggcacgccg gtggctttgg agacgaaggg
     9841 cacggtgcgg ctggcgcgcg ggttcacttc caatacgaac accacgccgt cttgtacggc
     9901 aaactgcacg ttcatcagtc cgaccacgcc cagcgcgtac gccatcgctt tggtttggcg
     9961 gcggatttcg tcttggattt cttcgcttaa ggagtagggc ggcagcgagc agccggagtc
    10021 gccggagtgg atgcccgcct gttcgacgtg ctgcatgatg ccgccgataa ccacgtcttt
    10081 gccgtctgaa acgcagtcca catcgacttc aatcgcgttg ttgaggaaga aatcgagcaa
    10141 cacggggctg tcttcggaaa cctgcacggc ttcgcgcatg tatttttgca actcttcggc
    10201 agagtgaaca atctgcatcg cgcgtccgcc gaggacgtaa gacgggcgca cgaccagcgg
    10261 ataaccgatt tcttcggctt tgacgagggc ttcttcttcg ttgtgggcga tgcggttggg
    10321 cggttggcgc aggcctaagt cgttcaacac tttttggaag cgttcgcggt cttcggcggc
    10381 atcgatgctg tcggcggacg tgccgatgat gtttacgccg ttttcaacca acgcgttggc
    10441 gagtttcagc ggggtttgac cgccgtaatg cacaatcacg ccccacgggt tttcggtgcg
    10501 gacgatttcc aacacgtctt ccaatgtcag cggctcgaaa tagaggcggt cgctggtgtc
    10561 gaagtcggtg gacacggttt ctgggttgca gttgaccata atcgtttcaa aaccggattc
    10621 gcgcagggcg agcgcggcgt gaacgcagca gtagtcaaac tcgatgccct gaccgatgcg
    10681 gttcgggccg ccgccgagaa tcatcacttt tttacggtcg gaaggacggg attcgcattc
    10741 ttcttcgtaa gtggagtaaa gataggcggt ttcggtggcg aactcggcgg cgcaggtgtc
    10801 aacgcgtttg taaaccggat gcagcttcag cgcgtagcgg tgttcgcgca cttctttttc
    10861 gcttacgttc aacaattgtg ccaaacgttt gtcggagaag cctttgcgtt tcagacggcg
    10921 tagggcggcg aaatccaaat cactcaaaat gccgtctgaa accgcttttt cttccttcat
    10981 caagtcttcg atttgcgcca ggaaccaagg gtcgatggcg cagatttcgt ggatttcttc
    11041 cagcgtgaag cccgcgcgga acgcgtctgc cacaaacagc atacgttcgg ggccggggtt
    11101 cgccagttcg cggcggattt ccgctttgtc ggagcttctc ggattgaagc cgcacaagcc
    11161 tgtttccaag ccgcgcaggg ctttttggaa gctttcctga atcgtgcggc ccatcgccat
    11221 cacttcgccc acggatttca tctgcgtggt caggcggtcg tctgcggcag ggaatttttc
    11281 aaatgcgaaa cgcgggattt tggttaccac atagtcgatg gaaggctcga acgacgcggg
    11341 ggttttgccg ccggtgatgt cgttgcgcaa ctcgtccagc gtaaagccga ccgccagttt
    11401 tgccgccacc ttcgcaatcg ggaagcccgt cgctttggaa gccagcgcgg acgaacggct
    11461 cacgcgcggg ttcatctcaa tcacaatcat ctcgccgttt tcagggttca ccgcaaactg
    11521 cacgttcgag ccgcccgtgt ccacgccgat ttcgcgcaat accgccagcg aagcgttgcg
    11581 catgatttgg tattctttgt ccgtcaacgt ttgcgccggc gcaaccgtaa tcgagtcgcc
    11641 cgtatgcacg cccatcgggt cgaagttttc aatcgagcag atgatgatgc agttgtcgtt
    11701 tttatcgcgt acgacttcca tctcgtactc tttccagcca aggacggact gctcaatcag
    11761 cagctcatgc gtgggcgagg catcgaaacc gcgttcgcaa atcgccaaaa actcgtcttt
    11821 attgtaggca ataccgccgc ccgaaccgcc catcgtgaaa gaaggacgaa tcagcgtcgg
    11881 gaagccgacc tgctcctgcg ccgccaaagc ttcgttcatc gtgtggcaga caaaagattt
    11941 cgggcaagac aaaccgattt tttccatcgc ttctttaaag cggccgcggt cttccgcctt
    12001 gtcgatcgcg tcttccgtcg cgccaatcag ctcgacattg tattttgcca gcacgccgtt
    12061 gcgtgccaaa tccagcgcac agttcagcgc ggtctgaccg cccatcgtgg gcagaatcgc
    12121 atcaggccgc tccttggcga taatcttttc caccgtctgc cacataatcg gctcgatgta
    12181 ggtaacatcc gccatttcag ggtcggtcat gatcgtggcg ggattggaat tcaccagaat
    12241 gactttatag ccttcttcac gcaaagcctt gcaggcctgt gcgcccgaat agtcaaattc
    12301 gcaggcctga ccgataacga tagggccggc gccgatgata aggatggatt ttaggtcggt
    12361 acgtttgggc atggtgggtc tttcttttga agaatttgga ttattgacga ttggtaactt
    12421 ctctaattat ttctgcatct gttttttcat cgcttggatt atctgaaaag aaaaaactgt
    12481 aattactatc ggctttaaat ttttcgtata gctctgggcg caaaattttt gctttttcac
    12541 tattttccac gctcctgcga ttaggcttgc cagccttatc tttcccattt ctacggacat
    12601 catagcaata aatagtgtta ggagaattag gttctaaacg agtagctaca atctttttat
    12661 aaattatgtc taaatctttt ttagtttgtg ttggaatgaa atctgcaaaa agattactaa
    12721 aactctgaaa aatttctctg attttcgcag caccagcctg aacattaatt ttaaaaaaat
    12781 taataaaatc agtagcactt ttaaaatgaa cttcataaaa atcagcatac gcaaatattg
    12841 aattttcact attcaaatta aaaaactcta attttgcttg tgcataatca tctggtctag
    12901 gttcatcagg tttataccta gtcaaaataa cggcgtattg cctttgatta taattaaaag
    12961 gaaatgcttc aattattcta tttttgtttc tcatatcatt aagcaaatac tttaaattat
    13021 tgaaattaat aggtattgac atatttaaac tcctgcgaat atgttgcaat aaacgtagca
    13081 atcgtaggtt gggttgaaaa cccaacacaa accgcttaat tgtctaaaat gttgggtttg
    13141 ctaacctaac ttgtatatcg aaacccccgt attgtagcaa gccgtagccc gtatgtaggg
    13201 tatgtgcggt acgtatgcac gcgttctcca ttttccctgc aaccccaacc caccgcgtgc
    13261 gtgccttgcg gcacactctc tgccgatggg tttaaaggtc gtctgaaaaa acgctcgcgg
    13321 cgtttgttcc atctgccttg cgataaaggc tgcctgaaaa attcccgctg ttgatatttc
    13381 gggcattctt tctcaaaccg cctgcaaccg caaaatccgc tgcaatctgc cccctccccc
    13441 gtgggggagg accggggaga gggcattctt cgaatttcgg caaccttccc caacacccta
    13501 accgctcaaa cacaagcctt gcggcttgtt gccctctctc tggctctctc ccacgggaga
    13561 gaggacgtgg tggctgttgg aattaagggt tctgcaggaa aaacaggttg tgcgggctgt
    13621 tttttgtttt tcagacggtc ttctaaacgc tcaattcaag cagcctgtac cctacctgta
    13681 tcctataatt ttcaaaactc taatcaaaat taaccgtttg ttattgcgca tactgctttt
    13741 ccaattcctg caatacgcgc aggatttccg ccagtacatc gtttgtctgc tgcaaaattt
    13801 cgtgattcca aaaacgcagc acggtaaagc ccaggctgtt gagatatgcc gtccgcgcgt
    13861 ggtcgtatac ggcttgttcc gcgtgctgcc cgccgtctgc ttcgacaatc agcttgggcg
    13921 ttacgcacat aaaatcaaca atatagtttc ccatcggctg ctggcggcgg aatttgtagc
    13981 catttagacg gcttgcccgc aggtgttgcc acaattttgc ttctgcctcg ctcatttctt
    14041 ggcgcatggc tttggcgcgt tggcgcaaga tggggttgtc ggtggtcaag agtttctcgt
    14101 gcgggttcat tttgttgtcg tgctgtttgc tgccctctct ctaactctct cccacgggga
    14161 gagaggacgg ggcggttgtt ggggttaaag gggctgtaag gaaaacaagt cgttcaggcc
    14221 actttttact tttcagacga cctgcaatca acggttgtaa atccaagttg cttttcaaac
    14281 cgcctgtaac cgcaaaactt gctgcaacct accccctccc ccgtggggga gggctgggga
    14341 gagggcattc ttcgaatttc ggcaaccttc cccaacaccc tagccgccca aacacaagcc
    14401 ttgctgtttg ttgccctctc tctaacgctt tcccacaggg agacaggacg gggcggctgt
    14461 agtgattaag ggttttgcaa ggaaaacaag gaaaacaagt tgtacaggct gttttttatt
    14521 tttcaagcga cctgaaatca acgcttgtaa atccaagtcg cttttcaaac tgcctgcaac
    14581 cgcaaaatct gctgcaacct accccctccc ccgtggggga gggctgggga gagggcattt
    14641 tccaagttgc ggcaatcttt cccaaatccc ttagtcttct aaaatacaag ccttacggtt
    14701 gttgccaaat gaaacttctt ccatacccaa aacttgcgtg taaaacgcaa tggttcggtc
    14761 aatgtcggca acggtcagta ccagatggtc gagtgcgcta atcttcattt cccgctttct
    14821 ttttcaggcg gcggcagtgc cgtctgaaag ccattatgcc cgttttgccg ctttcatatt
    14881 gccaatgaat ttgtcaaaca aatagccgac atcttgcgga ccggggctgg cttcggggtg
    14941 gccttggaag cagaacacag gtttgtcggt cagctcgatg ccttgcaaag tgttgtcaaa
    15001 caaggatttg tgggtaatgc gtgcgttagc gggcagggtg tcggcatcaa cggcaaaacc
    15061 gtggttttgg ctggtgatga cgactttgcc gctgtccaaa tcttgcacag ggtggttcgc
    15121 accgtggtgg ctgaagcgca ttttcagggt tttcgcgccg atagcgaggc tgatgagctg
    15181 gtgtcccaag cagatgccga aaatcggttt gccgctttcc atcagttttt gcacggcttc
    15241 gatggcgtag gtgcaaggct cggggtcgcc ggggccgttg gacaggaaca cgccgtcggg
    15301 attgagtgcc aacacgtctt gtgcgctcgt ttgggcgggg acgacggtca ggcggcagcc
    15361 gcgcgaggcg agcatacgca ggatgttggt tttcacgccg aaatcgtagg cgacgacgtg
    15421 gtaaggctgt tcgtcagggg taacgaaacc cttgcccaat tcccattcgc cttccgtcca
    15481 ttcgtaagtt tccgtgcagg aaacttcttt tgccaagtct ttgccgacca tactgccgaa
    15541 cgcggcgatg agttcttgcg ctttttcgat tgtggcatcc gcaccggtca gaatcgcgcc
    15601 gccttgcgcg cctttttcgc gcaacagcgt ggtcaggcgg cgggtgtcga tgtcggcgat
    15661 ggcgacggtt tggttgcgta ccaaatagtc gtgcaggctt tcggaggcgc ggaagttgct
    15721 gtgcaagagc ggcaggtcgc ggataatcag gccggaggca taaacgctgc ggctttcttc
    15781 atcttcggcg ttggtgccgg tgttgccgat gtgggggtag gtgagggtaa cgatttgttt
    15841 gcagtaggac gggtcggtca ggatttcctg atagccggtc atcgaagtat tgaacacgac
    15901 ttcgccggaa gtcgaacctt cgtaaccgat tgatgtgccg tggaatacgc tgccgtcagc
    15961 gaggacgagg agggcggggg tgctcatgat gggaatcctg tttttaataa aattcttgac
    16021 aatgccgtct gaagggactt cggcaggggg catccggtcg gaaaaatccg gtcaaaaaaa
    16081 aacacgccgc gcaagataga cgcgtaacgt gcttttcggg caagtgccta taccctgaaa
    16141 gcagcatatt ttaagacgaa acatacccga tttcaagcgc aaacgcggca ggcgggctga
    16201 tatgttcgcg cgaaaacgga aatccgtggc gtaaaaccgc ccgctccgcg cccactatgc
    16261 ccgttacgca tttccccacg tccgtccggc gaaactatgg gaatacccga atcgtcagga
    16321 atacctgaat cgtcaggaat acctgaatcg tcaggaatac ccgaaccatc attcccgcgc
    16381 aggcgggaat ctagacctgt cggcacagaa acttatcggg tataacggtt tcttgagatt
    16441 ccgcat
//
LOCUS       DAXHPV010000029        16363 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.029, whole genome shotgun sequence.
ACCESSION   DAXHPV010000029 DAXHPV010000000
VERSION     DAXHPV010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16363
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.029"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            1..149
                     /locus_tag="ACFM6C_000696"
                     /pseudo
     CDS             1..149
                     /locus_tag="ACFM6C_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(159..1268)
                     /gene="mltB"
                     /locus_tag="ACFM6C_000697"
     CDS             complement(159..1268)
                     /gene="mltB"
                     /locus_tag="ACFM6C_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase B"
                     /protein_id="HFC6158186.1"
                     /translation="MKKRKILPLAICLAALSACTAMEARPPRANEAQAPRADEMKKES
                     RPAFDAAAVFDAAAVPVSDSGFAANANVRRFVDDEVGKGDFSRAEWQDFFDKAAYKAD
                     IVKIMHRPSTSRPWYVFRTGNSGKAKFRGARRFYAENRALIDDVAQKYGVPAELIVAV
                     IGIETNYGKNTGSFRVADALATLGFDYPRRAGFFQKELVELLKLAKEEGGDVFAFKGS
                     YAGAMGMPQFMPSSYRKWAVDYDGDGHRDIWGNIGDVAASVANYMKQHGWRTGGKILV
                     SATLAPGADVQAIIGEKTALTRTVADLKAYGIIPGEELADDEKAVLFKLETAPGVFEY
                     YLGLNNFYTVWQYNHSRMYVTAVRDIANSLGGPGL"
     gene            complement(1177..1428)
                     /locus_tag="ACFM6C_000698"
     CDS             complement(1177..1428)
                     /locus_tag="ACFM6C_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158187.1"
                     /translation="MPLDGIFGGGRQISGGAKGNARHSAKPPIAADTAFRAAPLRRFP
                     TYPICSEHIYEKEKNTAAGNLFGGFVCLYGDGGTPAPGK"
     gene            complement(1469..2896)
                     /locus_tag="ACFM6C_000699"
     CDS             complement(1469..2896)
                     /locus_tag="ACFM6C_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HFC6158188.1"
                     /translation="MIHTEPSAQPSTMDTAAFLKHIESAFRRIFSDGIDLMRYLPEDK
                     WLALKQAGLLLPFLDKKHGGRKGSQFEIQEVLRIAGHYGVPVTLRTGIEGALVLQPLQ
                     EFGDEAQIAQGLDMVFKGEGGGLGVTEPETSGAAIAREMQSYYEYTDGQTIYVNAAKY
                     WQGNSQSDFLLVAAKERKNGKLAKIIDLLLVPKTYIRCETLASEGLRAVRYAVNRIDA
                     EMPATAVMKLSQSDAAGLRAFQNIFIRSRLQLIGMTHGIMEYILENLERYVRNDIRFV
                     DYERREIRRRHQVSEILYRYVCHSVSPVAPVAHQLMEANIVKTLATEYTYAAAQMLQK
                     LLGAKGFERGHTAGNIAIDIRPFTIFEGPNDMLYAEIYDQFVRATAEEKEAGMKLDKN
                     QTLLDRLQTDARFAAVARDYTLPEDIRSFLQEHTLTDACALQKVFIGKIIARLFVFVQ
                     AEHEDAAACLLNDIRKDILDCRYCG"
     gene            3081..6779
                     /gene="mfd"
                     /locus_tag="ACFM6C_000700"
     CDS             3081..6779
                     /gene="mfd"
                     /locus_tag="ACFM6C_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HFC6158189.1"
                     /translation="MTYPIPKPREKSRWSNLSQGSLPLALARYLPHKRLKVVLTQDAE
                     QALRLQTAWRFFRPHDTAVFLPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLF
                     VPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGEFAVR
                     GGIVDLFPMGSEMPYRIDLFDDEIDSIKTFDTETQRTISPVSEIRLLPAHEFPTDSEA
                     QKIFRSRFREEVDGNPNDAAVYKAVSNGHFGAGVEYYLPLFFENELETLFDYIGEDAL
                     FVSLGDVHAEANRFWSDVKSRYAMAQGDETYPPLLPQHLYLSSDVFAGRLKNYGQVLP
                     DIFGVEHTLPNVAVNRQADEPLQALKDFQTAFKGRILLCAESLGRRETMLGFLQQNGL
                     KAKPVSDWQGFLSAHEPLMITVAPLAYGFKLGGLQSPNQQQTTSASEGEGDAVTDQTE
                     FSASATNPLPSPLPQEREQSAAVVSDSLKAAAVSTESSLPPGKSNLHGQIQQQPAPSP
                     VGEGWGEGKAVAAQSAIAVITESDLYQYVARSRIHNRRKKHAAVSDDLLRDLAEINIG
                     DPVVHEEHGIGRYMGLITMNLGGETNEMMLLEYAGEAQLYVPVSQLHLISRYSGQAHE
                     NIALHKLGSGAWNKAKRKAAEKARDTAAELLNLYARRAAQSGHKFEINELDYQAFADG
                     FGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAV
                     LAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKATKAALEGMVDGTVDIVIGTHK
                     LVQDDIKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGL
                     RDFSLITTAPSRRLAVKTFVKPFSEGSVREAVLRELKRGGQVFFLHNEVDTIENMRER
                     LETLLPEARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIIN
                     RADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGFTLA
                     MQDLEIRGAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDLKKGRQPDLDAPLGITTEI
                     KLHSPALLPESYCPDIHERLVLYKRLAVCETVQQINAIHEELVDRFGLPEQPVKTLIE
                     SHHLRLMAKELGIDAIDAAGEAVTVTFGKNNNVDPTEIILLIQNDKKYRLAGADKLRF
                     TAEMENIEVRINTVKNVLKTLQNRCLPK"
     gene            6928..7311
                     /gene="panD"
                     /locus_tag="ACFM6C_000701"
     CDS             6928..7311
                     /gene="panD"
                     /locus_tag="ACFM6C_000701"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004068 - aspartate 1-decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006523 - alanine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HFC6158190.1"
                     /translation="MFRTMLGGKIHRATVTEADLNYVGSITVDQDLLDAAGIYPNEKV
                     AIVNNNNGERFETYTIAGKRGSGVICLNGAAARLVQKGDIVIIMSYVQLSEPEIAAHE
                     PKVVLVDGNNKIRDIISYEPPHTVL"
     gene            7333..8175
                     /gene="kdsA"
                     /locus_tag="ACFM6C_000702"
     CDS             7333..8175
                     /gene="kdsA"
                     /locus_tag="ACFM6C_000702"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HFC6158191.1"
                     /translation="MDIKINGITVGNDAPFVLFGGINVLEDLDSTLQTCAHYAEVTRK
                     LGIPYIFKASFDKANRSSIHSYRGVGLEEGLKIFEKVKAEFGIPVITDVHEPHQCQPV
                     AEVCDVIQLPAFLARQTDLVAAMAETGNVINIKKPQFLSPSQMKNIVEKFREAGNGKL
                     ILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQA
                     LDLALAGMATRLAGLFLESHPDPKLAKCDGPSALPLHLLEDFLIRIKALDDLIKSQPI
                     LTIE"
     gene            8190..8630
                     /locus_tag="ACFM6C_000703"
     CDS             8190..8630
                     /locus_tag="ACFM6C_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HFC6158192.1"
                     /translation="MMQTFRKISLYAATLWLGMQIMAGYIAALVLFKMLPKMQAGEIA
                     GVLFDILSWSGLAVWGAVLAAAFAILTRLQTALLLFLLSALAANQFLVTPVIEALKYG
                     HENWLLSFVGGSFGMWHGISSMIFMATALLSAVLSWRLSGKDAV"
     gene            8678..9964
                     /gene="eno"
                     /locus_tag="ACFM6C_000704"
     CDS             8678..9964
                     /gene="eno"
                     /locus_tag="ACFM6C_000704"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000015 - phosphopyruvate hydratase
                     complex [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004634 - phosphopyruvate hydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HFC6158193.1"
                     /translation="MSAIVDIFAREILDSRGNPTVECDVLLESGVMGRAAVPSGASTG
                     QKEALELRDGNKSRYSGKGVLKAVEHVNNQIAQALIGIDANEQSYIDQIMIELDGTEN
                     KGNLGANATLAVSMAVARAAAEDSGLPLYRYLGGAGPMSLPVPMMNVINGGEHANNSL
                     NIQEFMIMPVGAKSFREALRCGAEIFHALKKLCDSKGFPTTVGDEGGFAPNLNSHKEA
                     LQLMVEATEAAGYKAGEDVLFALDCASSEFYKDGKYHLEAEGRSYTNAEFAEYLESLV
                     NEFPIISIEDGMDENDWEGWKLLTEKLGGKVQLVGDDLFVTNPKILAEGIEKGVANAL
                     LVKVNQIGTLSETLKAVDLAKRNRYASVMSHRSGETEDSTIADLAVATNCMQIKTGSL
                     SRSDRMAKYNQLLRIEEELAEAADYPGKAAFYQLGK"
     gene            9979..10257
                     /gene="ftsB"
                     /locus_tag="ACFM6C_000705"
     CDS             9979..10257
                     /gene="ftsB"
                     /locus_tag="ACFM6C_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HFC6158194.1"
                     /translation="MKWVTVVLSFALVCCQYSLWFGKGSIGRNSSLREQIAVQEEKNQ
                     TLALRNHSLAAEVYDLENGQEAISEIARVELGYIQDGETFYRLIRHNR"
     gene            complement(10298..10588)
                     /gene="yfaE"
                     /locus_tag="ACFM6C_000706"
     CDS             complement(10298..10588)
                     /gene="yfaE"
                     /locus_tag="ACFM6C_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I ribonucleotide reductase maintenance
                     protein YfaE"
                     /protein_id="HFC6158195.1"
                     /translation="MARIGTNKGFFELLEGETLLEGLERTGHMVEYQCRSGYCGSCRV
                     KILEGSVTYREPPLAFLGRDEILPCCCCVEGDVRLDCGLSGEDEGLSDSLLK"
     gene            complement(10786..11919)
                     /gene="nrdB"
                     /locus_tag="ACFM6C_000707"
     CDS             complement(10786..11919)
                     /gene="nrdB"
                     /locus_tag="ACFM6C_000707"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009263 - deoxyribonucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class Ia ribonucleoside-diphosphate reductase
                     subunit beta"
                     /protein_id="HFC6158196.1"
                     /translation="MSYSTFPKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQ
                     LSFFWRPEEIDVSRDRIDYANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSI
                     PELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDD
                     LIEYTQYYNLLGEGMHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFA
                     FAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQL
                     FKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPI
                     PWINAWLSSDNVQVAPQEVEISSYLIGQIDSEVNTDDLGDFEL"
     gene            complement(12133..13113)
                     /locus_tag="ACFM6C_000708"
     CDS             complement(12133..13113)
                     /locus_tag="ACFM6C_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HFC6158197.1"
                     /translation="MTAARAGLVRFNYLKVKQAVQSKQIKGFKLWKSYDEQLEILRSR
                     GLQIDDEKKALGYLRTIGYYRLSGYFYSFRQFAPESSKSRLDEFITDTRFEDVKSLYM
                     FDKKLRQLALDALERIEVALRVNIAHTLGRHDPLAYKDSKYSATGFDHAEWLDRYNRL
                     VEREKKTGFVKHHLEHYADLPVWVACEVWDFGTMSMLYKGMLNKDKDSIAKLYRLKDG
                     KHLQTHLHAFNFIRNVSAHHSRLWNRDITFKASLKGLSDAEWKSLPINKPFVYFCLMK
                     RMLDVICPRTEWGNRLLALLDEFPDVANEAVSLRDMGLENNPRDWRLWQG"
     gene            complement(13079..15358)
                     /gene="nrdA"
                     /locus_tag="ACFM6C_000709"
     CDS             complement(13079..15358)
                     /gene="nrdA"
                     /locus_tag="ACFM6C_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class 1a ribonucleoside-diphosphate reductase
                     subunit alpha"
                     /protein_id="HFC6158198.1"
                     /translation="MNTPTDLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVE
                     LKSHIQFYNGIRTDDIHETIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPP
                     HLYDHVKKLTDAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQ
                     NRVTRQIYETPQFLYVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVR
                     TPTRQFSSCVLIECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEAR
                     HTGCIPFFKMFQAAVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQ
                     LDYGVQINRLLYTRLIKGGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQAPDIRK
                     RIIPAADLFSTLMQERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKP
                     LDNINDPNGEIALCTLSAFNLGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTS
                     TMGRRSLGIGVINYAYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGA
                     CTLFNQTVYSQGKLPIDTYKKDLDAVCGEPLHYDWESLRAEIVKYGLRNSTLTALMPS
                     ETSSQIANATNGIEPPRGLVTVKASKDGILKQVVPEFETLKNAYETLWQLPGNEGYLK
                     LVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYHNTRDGA
                     DDTQTDIQDDGCAGGACKI"
     gene            15887..16198
                     /locus_tag="ACFM6C_000710"
     CDS             15887..16198
                     /locus_tag="ACFM6C_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein"
                     /protein_id="HFC6158199.1"
                     /translation="MLAILLSAILGLVSTTAAAGTSEPAHRDTKHIRKANKQMLHPEC
                     RKYLERRAAWYRSQGNVQELRENKKARKAFRSLPYAEQKIQCRAAYEAFDDFDGGSFR
                     R"
BASE COUNT         4003 a         4473 c         4044 g         3843 t
ORIGIN      
        1 atgcaaaaat gccgtccgaa ccgaaacgtg gttcagacgg cattttatag tggattaaca
       61 aaaatcagga caaggcgacg aagccgcaga cagtacaaat agtacggcaa ggcaaggcaa
      121 cgccgtactg gtttaaattt aatccactat aaaaaacatt acaatcccgg gccgccaagc
      181 gaattggcaa tgtccctgac cgccgttaca tacatccgac tgtgattgta ctgccatacc
      241 gtataaaaat tgttcaagcc caaataatat tcaaacacgc cgggtgcggt ttccagtttg
      301 aacaaaaccg ccttttcatc atctgcaagc tcttcgccgg ggatgatgcc gtacgccttt
      361 aaatccgcca ccgtccgcgt cagggcggtt ttttcgccaa tgattgcctg aacatccgca
      421 cccggcgcca atgttgcaga caccagtatt ttcccgcccg tgcgccaacc gtgctgcttc
      481 atataattgg caaccgatgc cgcgacatcg ccgatgttgc cccatatgtc ccgatgtccg
      541 tccccgtcat aatccaccgc ccatttccgg tagctcgaag gcataaattg cggcatcccc
      601 attgcgcccg catagctgcc tttaaaggcg aaaacatcgc cgccttcttc ttttgccagc
      661 tttaaaagct cgaccaattc tttttggaaa aacccggcgc ggcgggggta atcaaagcct
      721 aaggtcgcca atgcgtccgc cacacggaaa ctgcccgtat ttttgccgta attcgtttca
      781 atcccgataa ccgccacgat aagttcggca ggcacgccgt atttttgcgc cacatcatcg
      841 ataagcgcgc ggttttccgc ataaaaccgg cgcgcgccgc gaaatttcgc cttgcccgaa
      901 tttcccgtgc ggaacacata ccacggacgc gatgtggagg ggcggtgcat aatcttgacg
      961 atgtccgcct tgtaagccgc tttgtcaaaa aaatcctgcc attccgcccg ggaaaaatcc
     1021 cctttcccga cttcatcgtc cacaaaacgg cggacatttg cattggcggc aaacccgctg
     1081 tcggataccg gtacggctgc cgcgtcaaat acggctgccg cgtcaaacgc ggggcggctt
     1141 tcttttttca tttcatccgc gcggggggct tgggcttcat ttgcccgggg cgggcgtgcc
     1201 tccatcgccg tacaggcaga caaagccgcc aaacaaattg ccagcggcag tatttttctc
     1261 tttttcataa atatgttccg aacaaatagg gtaagtggga aagcggcgca agggcgcggc
     1321 gcgaaatgcg gtatccgccg caatcggcgg ctttgcagaa tgccgcgcgt tgccttttgc
     1381 gccgcccgaa atctgcctgc cgccgccgaa aatgccgtct aaaggcactt cccctttcag
     1441 acggcattgc ctgcgccgta tttgcccgct atccgcaata tcggcagtcc aatatgtctt
     1501 tgcggatatc gttcagcagg caggctgccg cgtcttcgtg ttccgcctgt acgaagacaa
     1561 agagtcgggc gatgattttg ccgataaaga ctttttgcag ggcgcaggca tcggtcaggg
     1621 tgtgttcctg caggaagctg cggatgtctt cgggcaaggt gtagtcgcgg gcaacggcgg
     1681 caaagcgggc atcggtttgc aggcggtcga gcagggtttg gtttttgtcc aacttcatgc
     1741 ctgcttcttt ttcttcggcg gtggcgcgga caaactggtc gtaaatttcg gcataaagca
     1801 tatcgttcgg gccttcaaaa atcgtgaagg gacggatgtc gatggcgata ttgccggcgg
     1861 tgtgtccgcg ttcaaaaccc ttcgcgccca agagtttttg caacatttgc gcggcggcat
     1921 aagtgtattc cgtggcgagg gttttgacga tgttcgcctc catcagttga tgggcgacgg
     1981 gtgcaacggg cgaaacggaa tggcagacgt agcggtaaag aatctcggaa acctgatggc
     2041 ggcgccggat ttcgcggcgt tcgtaatcga cgaatctgat gtcgttgcgg acgtatcgtt
     2101 ccaggttttc aaggatgtat tccataatgc cgtgcgtcat gccgatcagt tgcaggcggc
     2161 tgcggataaa gatgttttgg aacgcgcgca aaccggcagc gtcgctctgg gagagtttca
     2221 tcacggcggt tgcaggcatt tcggcatcga tgcggttgac ggcgtaacga acggcgcgca
     2281 agccttcgga tgcgagggtt tcgcagcgga tgtatgtttt ggggacgagc agcaggtcga
     2341 tgattttggc gagtttgccg tttttgcgct ctttggcggc aacgaggagg aagtcgcttt
     2401 gcgagttacc ctgccagtat ttcgcggcgt tgacgtaaat ggtttgtccg tcggtatatt
     2461 cgtagtaaga ctgcatttcg cgtgcaatcg ccgcgccgga ggtttcgggt tcggtaacgc
     2521 ccaaaccgcc gccctcgcct ttgaaaacca tgtccaaacc ctgtgcgatt tgcgcttcat
     2581 cgccgaactc ttgcagtggc tgcaacacca gcgcgccttc gatgccggta cgcagcgtaa
     2641 cgggcacgcc gtaatgcccc gcaatccgca agacttcctg aatttcaaac tggctgccct
     2701 tgcggccgcc gtgttttttg tcgaggaagg gcaacagcaa acccgcctgc ttcaaggcaa
     2761 gccatttgtc ttcgggcagg tatcgcatca ggtcgatacc gtctgaaaaa atgcggcgga
     2821 atgcggattc gatgtgcttt aaaaaagcag ccgtgtccat agttgacggc tgcgcgctcg
     2881 gttcggtgtg tatcatcggc ttcctctgtc ggttcccatt aatcggcggc cggtcaaacc
     2941 gcctgccaca gtttagagtt gattttctaa actttaccac aaagtgcgcc gggcaacaat
     3001 ccgccgacct ttcagacggc atcgcgcccc ctcccgtgct aaaatgaccg tttgcatcac
     3061 tgtccgccga ttgccgcact atgacctacc ccatccccaa accccgtgaa aaatcccgtt
     3121 ggtccaatct ttcgcaaggc tcgctgccct tggctttggc gcgttatctg ccgcacaagc
     3181 ggctcaaggt cgtgctgacc caagatgcgg aacaggcgtt gcgccttcag acggcatggc
     3241 ggtttttccg tccgcacgat acggcggtgt tcctgccgga ctgggaaacg ctaccttacg
     3301 agcgtttttc tccgcatcag gatttggtgt cggagcggct gtcggcgttg tggcagatta
     3361 agagcggcgc ggcggacgtg ttgtttgtgc cggttgccac ggcgatgcag aagctgccgc
     3421 ccgtgccgtt tttggcgggg cgcacgtttt ggctgaaaac aggacagact ttggatatag
     3481 gccgtctgaa aaccgatttg gtagatgcgg gctacaacca tgtttcccat gttgttgcgg
     3541 cgggcgagtt tgccgtgcgc ggcggcattg tcgatttgtt ccccatgggc agcgaaatgc
     3601 cctaccgcat cgatttgttc gacgatgaaa tcgacagcat caaaaccttt gatactgaaa
     3661 cgcagcgcac catttctcct gtgtctgaaa tccgcctgct gccggcacac gagttcccca
     3721 ccgacagcga agcgcaaaaa atcttccgca gccgcttccg agaagaagtc gacggtaatc
     3781 cgaacgatgc ggctgtgtac aaagccgtca gcaacggcca cttcggcgcg ggcgtggaat
     3841 attatctgcc gctgtttttt gaaaatgagc tggaaacgct gtttgactat atcggcgaag
     3901 acgcgctgtt tgtctctttg ggcgatgttc acgccgaggc aaaccgcttt tggagcgacg
     3961 ttaaatcacg ttacgccatg gcgcagggcg acgaaaccta tccgcctttg cttccacagc
     4021 atttgtatct ctcctcagat gtttttgcag gccgtctgaa aaattatggt caggtattgc
     4081 cggatatttt tggtgttgaa catacgttgc caaacgtggc cgtcaaccgc caagcggatg
     4141 aaccgttgca ggcattgaaa gattttcaga cggcctttaa aggacggatt ttgttgtgcg
     4201 ccgaaagttt gggacgacgc gaaaccatgc tcggtttctt gcagcaaaac ggtttgaaag
     4261 ccaaacccgt gtccgactgg cagggctttt tatcggcaca cgagccgctg atgattacag
     4321 tggcgccgtt ggcatacggg ttcaaactgg gcggactgca atcgccgaac caacagcaaa
     4381 ctacttccgc ctccgaggga gaaggcgatg cggttaccga ccaaaccgaa ttttccgcat
     4441 ccgcaacaaa ccctctccct agccctctcc ctcaggagag ggaacaaagt gcagccgtcg
     4501 tttcagacag tctgaaagca gccgccgttt caaccgaaag cagcctgccc cccggtaaaa
     4561 gtaatctgca cgggcaaatc caacagcaac ctgccccctc ccccgtgggg gagggttggg
     4621 gagaaggcaa agcagttgcc gctcaaagtg ccatcgccgt catcaccgaa tccgatctct
     4681 accaatacgt cgcccgttcg cgcatccaca accgccgcaa gaaacacgcc gccgtttcag
     4741 acgacctgtt gcgcgacctt gccgaaatca acatcggcga ccccgtcgtg cacgaggaac
     4801 acggcatcgg ccgatatatg ggcttgataa caatgaactt gggcggcgaa accaacgaaa
     4861 tgatgttgct cgaatatgcg ggcgaagcgc agctttatgt gcctgtttca caactgcatt
     4921 taatcagccg ctactccggt caggcgcatg aaaacattgc cctgcacaag ctcggcagtg
     4981 gcgcgtggaa caaggcgaag cgcaaagccg ccgaaaaggc gcgcgatacc gccgccgagt
     5041 tgcttaacct ttacgcccga cgcgctgccc aatcgggaca caagtttgaa atcaacgagt
     5101 tggattatca agcgtttgct gacggcttcg gctacgagga aaccgaagac caggccgccg
     5161 ccatcgccgc cgtgattaaa gatttgacgc aagcgaagcc gatggatcgc cttgtgtgcg
     5221 gcgatgtcgg tttcggcaaa accgaagtcg ccctgcgcgc cgcgtttgtg gcggtgatgg
     5281 gtggcaaaca ggtcgccgta ctcgccccaa ccacgcttct ggtcgagcag cacgcgcaaa
     5341 actttgccga ccgtttcgcc gatttccccg tgaaagtcgc cagcctttcg cgtttcaaca
     5401 acagcaaagc caccaaagcc gcgctcgaag gcatggtgga cggcacggtc gatattgtta
     5461 tcggcacgca caaattggtg caggacgaca tcaaattcaa aaacttaggt ttagtgatta
     5521 tcgatgaaga acaccgcttc ggcgtgcgtc agaaagaaca gctcaaacgc ctgcgcgcca
     5581 atgtcgacat ccttaccatg accgccacgc cgattccgcg caccctcagc atggcactcg
     5641 aaggactgcg cgacttttcg ctgattacca ccgcgcccag ccgccgcctt gccgtcaaaa
     5701 cctttgtcaa accctttagc gaaggcagtg tgcgcgaagc agtattgcgc gaactcaaac
     5761 gcggcgggca agtgtttttc ctgcataatg aagtggatac catcgaaaac atgcgcgagc
     5821 ggctggaaac cctattgccc gaagcccgca tcggcgtggc gcacggacaa ctgcgcgagc
     5881 gcgagctgga gcaagtgatg cgcgactttt tgcagcaacg atttaacgtg ttgctctgtt
     5941 ccaccatcat cgaaaccggc atcgacatcc ccaacgccaa taccatcatc atcaaccgcg
     6001 ccgataagtt cgggctggcg caattgcacc agcttcgcgg gcgcgtcggc cgcagccacc
     6061 accaagccta cgcctacctg ctcacgcccg aatacatcac caaagacgca gaaaaacgtc
     6121 tcgatgccat cgcggcggca gacgaactcg gcgcaggttt caccctcgcc atgcaggatt
     6181 tggaaatccg cggcgcaggc gaaatcctcg gcgaagggca gtccggcgaa atgatacagg
     6241 tcggcttcac gctctacacc gaaatgctca aacaagccgt gcgcgacctc aaaaaaggcc
     6301 gccagcccga cctcgacgca ccgctgggca tcaccaccga aatcaaactg cacagccccg
     6361 ctctgctgcc cgaaagctac tgccccgaca tccacgagcg tctcgtcctc tacaaacgcc
     6421 tcgccgtctg cgaaaccgtg cagcaaatca acgccataca cgaagaactc gtcgaccgct
     6481 tcggactgcc cgaacaaccc gtcaaaaccc ttatcgaaag ccaccacctg cggcttatgg
     6541 caaaagaatt gggtatcgat gccattgatg cggccggcga agcggtaacg gtaacctttg
     6601 gtaaaaacaa taatgtcgat ccaaccgaaa tcatcctgct gattcagaac gacaaaaaat
     6661 accgccttgc cggcgccgat aagctgcggt ttaccgcaga gatggaaaat atcgaggtca
     6721 gaatcaacac cgtaaaaaac gttttaaaaa ccttgcaaaa cagatgcctg cccaaataaa
     6781 gccgacaccg caatgccgtc tgaaacaccg ttttccttgt ccgaaagccg ccattatgaa
     6841 tttgaaggaa actccactat aatacggcat tcagatttcc agacggcatc gcgcccgtca
     6901 aaccgcacac aaaccaaaag gaaatacatg ttccgtacta tgcttggcgg aaaaatccac
     6961 cgcgccaccg ttaccgaagc cgatttaaac tatgtcggca gcattaccgt cgatcaagac
     7021 ctgttagacg cggcaggcat ctaccccaac gaaaaagtcg ccatcgtcaa caacaacaac
     7081 ggcgaacgtt ttgaaaccta taccattgca gggaaacgcg gcagcggcgt gatttgtctg
     7141 aacggtgctg cggcaaggct ggtgcagaaa ggcgatatcg tcatcatcat gtcttacgtc
     7201 caactctccg aacccgaaat cgccgcgcat gaacccaaag tcgtcttggt agacggaaac
     7261 aacaaaatcc gcgacatcat ctcctacgag ccgccgcaca ccgtgctgta accctgaaaa
     7321 cggacattga ccatggatat taaaattaac ggcattaccg tcggtaacga cgctcctttt
     7381 gtactgttcg gcggcatcaa cgttttagaa gatttggatt ccaccctcca aacctgcgca
     7441 cattacgccg aagttacccg aaaactcggt attccctata tctttaaagc ctctttcgac
     7501 aaggcaaacc gttcctccat ccattcttat cgcggcgtag gcttggaaga aggcttaaag
     7561 atttttgaaa aagtcaaagc agagttcggc atccccgtca ttaccgacgt acacgaaccc
     7621 catcagtgcc aacccgtcgc cgaagtgtgc gatgtcatcc agcttcccgc ctttcttgcg
     7681 cggcagaccg atttggtggc cgcaatggcg gaaactggca atgtcatcaa catcaaaaaa
     7741 ccccagttcc tcagcccctc tcaaatgaaa aacatcgtgg aaaaattccg cgaagccggc
     7801 aacgggaagc tgattttatg cgaacgcggc agcagcttcg gctacgacaa cctcgttgtc
     7861 gatatgctcg gtttcggcgt gatgaaacaa acctgcggca acctgccggt tattttcgac
     7921 gttacccatt ccctgcaaac ccgcgatgcc ggttctgccg catccggcgg tcgtcgcgca
     7981 caggctttgg atttggcact tgcaggcatg gcaacccgcc ttgccggcct gttcctcgaa
     8041 tcgcaccccg atccgaaact ggcaaaatgc gacggcccca gcgcgctgcc gttgcacctt
     8101 ttagaagatt ttttaatccg catcaaagca ttggacgatt taatcaaatc acaaccgatt
     8161 ttaacaatcg agtaacacgg tttcgcctta tgatgcagac tttccgaaaa atcagcctgt
     8221 atgccgcaac cttgtggctc ggtatgcaga ttatggcggg ttatatcgcc gcactggtgc
     8281 tgttcaaaat gctgcccaaa atgcaggcgg gcgaaattgc cggcgtattg ttcgacatcc
     8341 tctcttggag cgggcttgcc gtttggggcg cggtgttggc tgctgccttt gccatcctga
     8401 cccgactgca aaccgccctg ctgctttttt tattgtccgc ccttgccgcc aaccaatttt
     8461 tggttacccc cgttatcgag gcactgaaat acgggcatga aaattggctg ttgtcgtttg
     8521 taggcggatc cttcggaatg tggcacggta tttccagcat gattttcatg gcaaccgccc
     8581 tactttcagc agttttaagt tggcggcttt ccggcaaaga tgccgtctga agccctccca
     8641 tttttttacc tcccttcact tcacttggag aacattcatg agcgcaatcg ttgatatttt
     8701 cgcccgcgaa attttggact cacgcggcaa ccccacagtc gagtgtgatg tattgctcga
     8761 atccggcgta atgggacgcg cagccgtacc gagcggcgcg tccaccggtc aaaaagaggc
     8821 tttggaactt cgcgacggca acaaatcccg ctattccggc aaaggcgtat tgaaggcggt
     8881 cgaacacgtc aacaaccaaa tcgcccaagc cctcatcggt atcgatgcca acgagcaatc
     8941 ttatatcgac caaatcatga tcgaattgga cggtactgaa aacaaaggca atttgggtgc
     9001 gaatgcgact ttggcggttt ctatggcggt tgcacgcgcc gctgccgaag actcaggcct
     9061 gccgctttac cgctacttgg gcggcgcagg cccgatgtcc ctgcccgtac cgatgatgaa
     9121 cgtcatcaac ggcggcgaac acgccaacaa cagcctgaac atccaagagt ttatgattat
     9181 gcccgtcggc gcaaaatctt tccgcgaagc gttgcgctgc ggtgcggaaa ttttccacgc
     9241 cttgaaaaaa ctgtgcgaca gcaaaggctt cccgaccaca gtcggcgacg aaggcggttt
     9301 cgcccccaac ctgaacagcc acaaagaagc cctgcaactg atggtcgagg cgaccgaagc
     9361 cgccggctac aaagcgggcg aagacgtatt attcgcattg gactgcgcgt ccagcgagtt
     9421 ctacaaagac ggcaaatacc acttggaagc cgaaggccgc tcctacacca acgcggaatt
     9481 tgccgaatat ctggaaagtc tggtcaacga gttccccatc atctccatcg aagacggcat
     9541 ggatgaaaat gactgggaag gctggaaact gctgaccgaa aaactgggtg gcaaagtcca
     9601 actcgttggc gacgacctct tcgttaccaa cccgaaaatc cttgccgaag gcattgaaaa
     9661 aggcgtggca aacgcactat tggtcaaagt caaccaaatc ggtactttga gcgagaccct
     9721 gaaagccgtc gacttagcca aacgcaaccg ctacgccagc gtaatgagcc accgctccgg
     9781 cgaaaccgaa gacagcacca ttgccgactt ggcagtcgcc accaactgta tgcagatcaa
     9841 aaccggttct ttgagccgtt ccgaccgcat ggcaaaatac aaccaactgc tgcgtatcga
     9901 ggaagaattg gcggaagccg ccgactaccc cggcaaagcc gcattctacc aactgggcaa
     9961 ataagaaaag gttaaggtat gaagtgggta actgtcgttt tatccttcgc acttgtctgt
    10021 tgccaataca gcctctggtt cggcaaaggc agcatcggac gcaacagcag tctgagagaa
    10081 cagattgccg ttcaagaaga aaaaaaccag acactcgccc tacgcaatca ttcccttgcc
    10141 gccgaagtct atgatttgga aaacggtcaa gaagccattt cggaaatcgc ccgggtagaa
    10201 ctgggttata tccaagacgg tgaaaccttt taccgactca tcaggcataa ccggtaatac
    10261 cgtcaaaaag ccgtccgaac caatgttcgg acggctttta tttcaacaaa ctgtcagaca
    10321 gcccctcatc ctcccccgac aaaccgcaat ccagcctgac atccccctcg acgcaacagc
    10381 agcacggcag tatctcgtcc cgccccaaaa aagccaaagg cggctcccga taagtaacgc
    10441 ttccctccaa aatcttcact cggcacgatc cgcaatatcc gcttcggcac tgatattcca
    10501 ccatatgccc cgtccgttcc aagccttcca acagggtctc gccctccaag agctcaaaaa
    10561 aacccttatt cgtaccaatg cgcgccattt ccgaccaatc aaaaatatag tggattaaat
    10621 ttaaaccagt acggcgttgc ctcgccttgt ccggattttt gttaatccac tataatccac
    10681 tataaaagga acaataaccg atcctacccg ctgtttttcc catcatacaa catacaaatg
    10741 ccgtctgaaa catccggctt cagacggcat tttttcaaaa aacatttaca actcaaaatc
    10801 gcccaaatca tccgtattca cttcagaatc gatctgaccg atcaaataag aggatatttc
    10861 cacttcctgc ggcgcgacct gtacgttgtc ggacgacagc cacgcattaa tccacggaat
    10921 cgggttttga tttgcgcctt caaatccggc cggcaacccc accgcctgca tacgcagatt
    10981 ggtaatatat tcgacgtatt gggataagat ttctttgttc aaaccaatca tcgaaccgtc
    11041 tttaaacaaa tatgccgccc attctttttc ctgttccgcc gcttttttga agagttggaa
    11101 acattcgtcc tgcaactcag cggcaatttc tgccatttca gaatcatcga cacccgaacg
    11161 catcagatta agcatatgct gcgtgccggt caggtgcagg gcttcgtcgc gggcaatcag
    11221 tttgatgatt ttggcgttgc cttccatcaa ctcgcgctcg gcaaaagcaa acgagcaggc
    11281 gaatgaaacg tagaaacgga tggcttccaa cacgttgacg cacatcaggc agagatagag
    11341 ttttttcttc aacccgcgca aagatacggt aacgggtttt ccgccgacat tgtgcatccc
    11401 ttcgcccaac aggttgtaat actgggtgta ttcgattaag tcatcgtaat agcaggcaat
    11461 gtcttcggcg cgggcggtaa tgtattcgtt ttcgacaata tcatcaaaca cgaccgacgg
    11521 atcattcaca atattgcgga tgatgtgggt atagctgcgc gagtgtatgg tttcgctgaa
    11581 gctccacgtt tcaatccacg tttccaactc gggaatcgaa accaaaggca gcaaggcaac
    11641 attcggactg cgcccttgga tggaatcgag cagtgtttgg tatttcagat tgctgatgaa
    11701 aatatgtttt tcgtgttcag gcaggttggc gtagtcgata cggtcgcgcg acacgtcgat
    11761 ttcttccggc cgccaaaaaa acgacaattg tttttcaatc agtttttcaa atacctcgta
    11821 tttctgctgg tcataacggg cgacattcac aggctgacca aaaaacatcg gctcattcag
    11881 cgcgtcgttt ttggttttgg gaaaggtgct gtatgacatg actaggtgtt cgcaggacat
    11941 ggttttctca ggtttattta aatttaggaa tttggatttc agacagcctt atatgtttta
    12001 agtaaggtca tctgaatgta tctgtacatt gaattcttgc cttaaatatc gctgttagtt
    12061 ataatcttcc ccaacaactc ccccaacttt gccaacctac gcggttggag caacaaggtt
    12121 gggggctttc ttttatccct gccacaatct ccagtctcgc ggattatttt ccaaacccat
    12181 atcgcgcaaa cttacagctt cattcgcgac atcgggaaac tcatccagta aagcaagaag
    12241 acggtttccc cattcggttc gcggacaaat aacatccaac atccgtttca tcaggcaaaa
    12301 atacacaaac ggtttattga taggcaatga tttccattct gcatcagaca aacctttcaa
    12361 gctggcttta aaagtaatat ccctattcca taatcgactg tgatgtgccg aaacgttgcg
    12421 gataaagtta aatgcgtgca gatgtgtttg cagatgctta ccgtctttca aacgatacaa
    12481 tttggcaata gagtctttat ctttattcaa catcccttta tacagcatag acatcgtgcc
    12541 gaaatcccat acttcgcagg ctacccagac aggtaagtcg gcataatgtt ccaaatgatg
    12601 tttaacaaaa ccggttttct tttcgcgctc gaccagcctg ttatacctat ccagccattc
    12661 cgcatggtcg aaacctgtgg cagaatattt gctatctttg taagccaatg ggtcatgccg
    12721 tcctaatgta tgggcaatat ttacccgaag cgctacttca attctttcca gtgcatctaa
    12781 tgccaattgc cgcaatttct tatcgaacat ataaaggctt ttgacatctt caaaacgagt
    12841 atctgtaata aactcatcca acctgctctt agaactttca ggagcaaatt gtcggaaaga
    12901 gtaaaaataa ccgcttaatc ggtaataacc gatggtgcgt aaatatccta atgccttttt
    12961 ctcatcatca atctgcaatc ctctacttct tagaatctcc aactgctcat cgtaagattt
    13021 ccaaagcttg aagcctttta tctgcttgct ttgcacagcc tgtttcactt tcaaatagtt
    13081 aaatcttaca agccccgccc gcgcagccgt catcctgaat atcggtctgc gtatcgtccg
    13141 cgccgtcgcg ggtgttatgg tagtacaggg ttttgacgcc gtatttgtag gcggtcagca
    13201 ggtctttgag catttgtttc atagaaactt tgccgccttc gaatttgccc gggtcgtagg
    13261 cggtattggc ggaaatcgat tgatcgacga atttttgcat cacgccgaca agtttcaggt
    13321 agccttcgtt gccgggaagc tgccacaggg tttcataggc atttttcagg gtttcaaact
    13381 ccggcacgac ttgtttcaaa atgccgtctt tcgatgcttt gaccgttacc aatccgcgcg
    13441 gcggctcgat accgttggtg gcgttggcga tttgcgaact ggtttcagac ggcatgagtg
    13501 cggttagagt agagttgcgc aggccgtatt tgacgatttc ggcacgcagg ctttcccagt
    13561 cgtaatgcaa aggctcgccg cagacggcat ccaaatcttt tttgtaggtg tcgatgggca
    13621 gtttgccttg cgaataaacg gtttggttaa agagcgtaca cgcaccgtat tctttggcaa
    13681 ggtttgccga tgctttgagc agataatact gtatggcttc aaaggtacgg tgggtcagac
    13741 cgagcgcgga gccgtcgctg tagcggacac cgtttttcgc cagataataa gcatagttga
    13801 tgacgccgat gccgagcgaa cggcgaccca tagtagaggt acgcgcggct tctaccggat
    13861 atccctgata atctaaaagt gcatcgagcg cgcgaacggt caagtcggca agcccttcca
    13921 attcgtccaa gctgtttaat gcgcccaagt taaaggcaga cagtgtacac aaggcgattt
    13981 cgccgttcgg atcgttgata ttgtccagcg gtttggtcgg cagggcgatt tccatacaca
    14041 agttggactg atgaacaggc gcgacgcgcg gatcgaacgg gctgtgcgta ttgcagtgat
    14101 cgacgttttg aatgtagatg cgcccggttc cggcacgctc ctgcatcagc gtggaaaaca
    14161 ggtcggcagc cggaatgatg cgcttgcgga tatcaggggc ttgctcgtat ttcgtataga
    14221 gccgctcaaa ttcgtcttgg tcggcaaaaa acgcttcgta caatcccgga acctcgttgg
    14281 gcgaaaacag cgtaatgttg ccgcccttaa tcaggcgggt gtacagcagg cggttgattt
    14341 gcacgccgta atcaagctga cggatacggt tgtcttccac accgcggttg tttttcaaca
    14401 ccagcaggct ttcggcttcg atatgccaca aagggtagaa caaggttgcc gcgccgccgc
    14461 gcacgccacc ttgcgaacag gatttgaccg ccgcctgaaa cattttaaag aagggaatgc
    14521 agccggtatg ccgcgcttcg ccgccccgga tttcgctgtc caaaccgcgg atacgtccgg
    14581 cattgatgcc gatgcccgca cgctgggaaa cgtatttcac aatcgcgctg gtagtggcat
    14641 tgatggaatc caaactatcg tcgcattcaa tcagcacaca gcttgagaac tggcgcgtag
    14701 gcgtacgcac gccgctcata atcggggtcg gcagcgatac tttaaatgtg gaaacggcat
    14761 cgtaaaaccg tttgacgtaa tcgaggcgtg tttctttggg atatttgctg aaaagacaca
    14821 tcgccaccaa aacatataag aactgcggtg tttcataaat ctggcgggta acgcggttct
    14881 gtaccagata tttgccttcg agctgtttga cagcggcata ggaaaaggac atatcgcgtt
    14941 cgtggtcgat ataggcgttc agctcgtcaa attcttcgcg gctgtaatcc tcaaggatat
    15001 gcctgtcgta ttttccagca tcggtaagtt ttttaacgtg gtcgtaaagg tgcggcggct
    15061 cgtactcgcc gtaggctatt ttacgaagat ggaaaatggc caaccgcgcg gcaaggtatt
    15121 ggtagtccgg ggtatcttcc gaaattaaat cggcagcggc tttgatgatg gtttcgtgga
    15181 tgtcgtcggt gcggatgccg ttgtagaact ggatgtgcga tttcaactcg acctgcgaca
    15241 cggaaacatt ttccaatccg tccgccgccc aagtgacgac acggtgaatc ttatccaaat
    15301 caatggcttc taatcttccg tctcgtttgg ttactttcaa atcagtcggt gtattcatcg
    15361 cttcctcttc cactcttgat attcaagaca cggtcttttc aaataaatta agacagacaa
    15421 tatagtggat ttttggcatt ttctccagtc ttgacaacgg ttgcattttt cagtttcagg
    15481 caatgcgcga taaaacccgc ctgtcgtatt tttcctataa tatttgtttt atctgataat
    15541 tctttaccga taaaaaacgg gtaaattttt tgccttttga ccggctccgg ctacaaggcg
    15601 gtgaaataag gattttccga cgaaaaagga aagcttccgg ttttctgccc ctgcgaattg
    15661 ttaaattttg caaagtatga ttttgccgcg ccgccgccga caaattccat tttcttaccg
    15721 attgaaattt attattgaga ttaatgtgtt atttgaatcc gcatatcaaa cggcaagttt
    15781 tgtcggctga atgagtctga aactgccgac aatttgcccg ttccatcctt ccatcctata
    15841 ctggaaggaa tgacaaactg aaaggatcgt catgtctgtc aaaaagatgc ttgccatact
    15901 gttgtctgca atattgggac tggtatcgac aactgccgct gccggtacgt cagaacccgc
    15961 ccaccgcgat accaaacata tccgcaaggc aaacaagcag atgctgcacc ccgaatgcag
    16021 gaaatatttg gaacgccgtg ccgcgtggta ccgatcgcaa ggcaacgtgc aggaattgcg
    16081 cgaaaacaaa aaggcgcgca aagcattccg ctccctgcct tatgcggaac agaaaatcca
    16141 atgccgggcg gcttatgagg ctttcgatga tttcgacggc ggcagtttcc gccgttaatc
    16201 ccatataaaa tatgccgtct gaacacaggt tcagacggca ttttccatag atacaacaaa
    16261 ccatccttac gccatttcgt ttgaggtact cccgttgctg cagccttaat atagtggatt
    16321 aacaaaaatc aggacaaggc gacgaagccg cagacagtac aga
//
LOCUS       DAXHPV010000030        16212 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.030, whole genome shotgun sequence.
ACCESSION   DAXHPV010000030 DAXHPV010000000
VERSION     DAXHPV010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16212)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16212)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16212
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.030"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..239)
                     /locus_tag="ACFM6C_000711"
     CDS             complement(<1..239)
                     /locus_tag="ACFM6C_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HFC6158200.1"
                     /translation="MQTANKKTILVTGGAGFIGSAVVRHIIRNTRDAVVNVDKLTYAG
                     NLESLTEVADNPRYAFEQVDICDRAELDRVFAQHRP"
     gene            complement(240..1283)
                     /gene="galE"
                     /locus_tag="ACFM6C_000712"
     CDS             complement(240..1283)
                     /gene="galE"
                     /locus_tag="ACFM6C_000712"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HFC6158201.1"
                     /translation="MNKQYPKINYIGNKEKIASWICDQLPSDVDTVADVFSGGCSFAY
                     EAKKRGYRVITNDILAINYQIALALIENNHETLNDDDVAMIFSGSPHAGFMSQRYAEK
                     FYFHDECQQLDLYRKNIGKLDNQYKRALAFTLMRRAMIRKMPYTEDMRPGDTANPYGA
                     SKAMVERMLTDIQKADPRWSVILLRYFNPIGAHESGLIGEQPNGIPNNLLPYICQVAS
                     GRLPQLSVFGGDYPTPDGTGMRDYIHVMDLAEGHIAAMKAKGGVAGVHLFNLGSGRAY
                     SVLEIIRAFEAASGLNIPYQIQPRRAGDLACSFADPSHTKQQTGWETKRGLQQMMEDS
                     WRWVSRNPNGYGD"
     gene            complement(1276..1470)
                     /locus_tag="ACFM6C_000713"
     CDS             complement(1276..1470)
                     /locus_tag="ACFM6C_000713"
                     /inference="COORDINATES: protein motif:HMM:NF012372.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HFC6158202.1"
                     /translation="MRKVFHYEQNRALTVRELAALQSFPDNFIFCGSKIAQQQQVGNA
                     VPPLLAKAIAESILKMSENE"
     gene            complement(1448..2278)
                     /locus_tag="ACFM6C_000714"
     CDS             complement(1448..2278)
                     /locus_tag="ACFM6C_000714"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HFC6158203.1"
                     /translation="MHTPLTYIDLFSGAGGLSLGFEQAGFQQLLSVEMESDYCQTYRT
                     NFPHHQLLQKDLTTLTEQDLINCLNGQAVDLIIGGPPCQGFSMAGKIGRTFTDDPRNH
                     LFKEFVRIVKIVQPYFFVMENVARLYTHNSGKTRIEIIQAFQNIGYSVECKILSAADF
                     GVPQIRSRVIFIGRRDKGKISFPEPLQISHQTVGSAIGHFPKLAAGESNPHVANHEAM
                     NHSAQMLEKMAFVKNGGNRNDIPEPLRPKTGDIRKYIRYNSNKTSRLYYRRYAQSFSL
                     "
     gene            complement(2309..4582)
                     /locus_tag="ACFM6C_000715"
     CDS             complement(2309..4582)
                     /locus_tag="ACFM6C_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003729 - mRNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Tex family protein"
                     /protein_id="HFC6158204.1"
                     /translation="MNITQILSQELSATAAQITAAVELLDDGATVPFIARYRKEATGG
                     LDDTQLRRLAERLQYLRELEERKAVVLKSIEEQGKLSDDLRAQIEAADNKTALEDLYL
                     PYKPKRRTKAQIAREHGLQPLADVLLAEQPLDVEAAAQGYLNENVPDAKAALDGARAI
                     LMEQFAEDAELIGTLRDKLWNEAEIHAQVVGGKETEGEKFSDYFDHREPIRAMPSHRA
                     LAVLRGRNEGVLNIALKYQPDDTPITQQSEYEQIIARRFKVSDGHKWLRDTVRLTWRA
                     KIFLSLELEALNRLKEAADTDAITVFARNLKDLLLAAPAGRLTTLGLDPGYRNGVKCA
                     VVDDTGKLLDTVIVYLHQENNMLATLSRLIKQHGVKLIAIGNGTASRETDKIAGELVR
                     EMSKMGLHKIVVSEAGASIYSASELAAREFPDLDVSLRGAVSIARRLQDPLAELVKID
                     PKSIGVGQYQHDVNQSQLAKSLDAVVEDCVNAVGVDVNTASAPLLARISGLNQTLAQN
                     IVAYRDENGAFDSRKKLLKVPRLGEKTFEQAAGFLRINGGKEPLDASAVHPEAYPVVA
                     KMLAQQGISAAELIGNRERVKQIKASDFTDERFGLPTILDILSELEKPGRDPRGEFQT
                     ASFAEGIHEISDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPRE
                     VVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGGAKHKMPSENRSRERTAGRKPQRND
                     RAPANSAMADAFAKLKR"
     gene            complement(4646..5296)
                     /locus_tag="ACFM6C_000716"
     CDS             complement(4646..5296)
                     /locus_tag="ACFM6C_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6158205.1"
                     /translation="MISVEHVSKRYLTRQGWRTVLHDISFKMEKGEKIGILGRNGAGK
                     STLIRLISGVEPPTTGEIKRTMSISWPLAFSGAFQGSLTGMDNLRFICRIYNVDIDYV
                     KNFTEEFSELGQYLYEPVKRYSSGMKARLAFALSLAVEFDCYLIDEVIAVGDSRFADK
                     CKYELFEKRKDRSIILVSHSHSAMKQYCDNAMVLEKGHMYQFEDMDKAYEYYNSLP"
     gene            complement(5293..6090)
                     /locus_tag="ACFM6C_000717"
     CDS             complement(5293..6090)
                     /locus_tag="ACFM6C_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFC6158206.1"
                     /translation="MKALHKTSFWESLAIQRRVIGALLMREIITRYGRNNIGFLWLFV
                     EPLLMTFVIVLMWKFLKADRYSTLNIVAFAITGYPMLMMWRNASKRAVGSISSNASLL
                     YHRNVRVLDTILARMILEIAGATIAQIVIMAVLIAIGWIEMPADMFYMLMAWLLMAFF
                     AIGLGLVICSIAFNFEPFGKIWGTLTFVMMPLSGAFFFVHNLPPKVQEYALMIPMVHG
                     TEMFRAGYFGDSVTTYENPWYILLCNLVLLLLGLAVVARFSKGVEPQ"
     gene            complement(6090..7253)
                     /gene="ctrB"
                     /locus_tag="ACFM6C_000718"
     CDS             complement(6090..7253)
                     /gene="ctrB"
                     /locus_tag="ACFM6C_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide export protein CtrB"
                     /protein_id="HFC6158207.1"
                     /translation="MSEQLPVAVATETKAERKKPKKKSWIKKLSPLFWVTVIIPTVIS
                     LVYFGFFASDRFTSQSSFVVRSPKSQSSLNGLGAILQGTGFARAQDDIYTVGEYMRSR
                     SSLDELRKILPVREFYETKGDVFSRFNGFGFRGEEEAFYQYYKNQVMINFDTVSGIST
                     LNVTSFDALESKKINEALLKQGEALINQLNDRARADTVRYAEEVVKTAAERVKEASQN
                     LTDYRIANGVFDLKAQSEVQMGLVSKLQDELIVIQTQLDQVKAVTPENPQIPGLQARE
                     QSLRKEIDQQLRAISGGGHSSLSNQAAEYQRVYLENQLAEQQLAAAMTSLESAKVEAD
                     RQQLYLEVISQPSLPDLAHEPKRLYNIVATLIIGLMVYGILSLLTASIREHKN"
     gene            complement(7268..8443)
                     /gene="ctrA"
                     /locus_tag="ACFM6C_000719"
     CDS             complement(7268..8443)
                     /gene="ctrA"
                     /locus_tag="ACFM6C_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide export outer membrane
                     protein CtrA"
                     /protein_id="HFC6158208.1"
                     /translation="MFKVKFYIRHAVLLLCGSLIVGCSAIPSSGPSAKKIVSLGQQSE
                     VQIPEVELIDVNHTVAQLLYKAQINQSFTQFGDGYASAGTLNIGDVLDIMIWEAPPAV
                     LFGGGLSSMGSGSAHQTKLPEQLVTARGTVSVPFVGDISVVGKTPGQVQEIIKGRLKK
                     MANQPQVMVRLVQNNAANVSVIRAGNSVRMPLTAAGERVLDAVAAVGGSTANVQDTNV
                     QLTRGNVVRTVALEDLVANPRQNILLRRGDVVTMITNPYTFTSMGAVGRTQEIGFSAR
                     GLSLSEAIGRMGGLQDRRSDARGVFVFRYTPLVELPAERQDKWIAQGYGSEAEIPTVY
                     RVNMADAHSLFSMQRFPVKNKDVLYVSNAPLAEVQKFLSFVFSPVTSGANSINNLTN"
     gene            8578..9711
                     /gene="neuC"
                     /locus_tag="ACFM6C_000720"
     CDS             8578..9711
                     /gene="neuC"
                     /locus_tag="ACFM6C_000720"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0006047 - UDP-N-acetylglucosamine metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase"
                     /protein_id="HFC6158209.1"
                     /translation="MKRILCITGTRADFGKLKPLLAYIENHPDLELHLIVTGMHMMKT
                     YGRTCKEVTRENYQHTYLFSNQIQGEPMGAVLGNTITFISRLSDEIEPDMVMIHGDRL
                     EALAGATVGALSSRLVCHIEGGELSGTVDDSIRHSISKLSHIHLVANEQAVTRLVQMG
                     EKRKHIHIIGSPDLDVMASSTLPSLEEVKEYYGLPYENYGISMFHPVTTEAHLMPQYA
                     AQYFKALELSGQNIISIYPNNDTGTESILQELLKYQSDKFIAFPSIRFEYFLVLLKHA
                     KFMVGNSSAGIREAPLYGVPSIDVGTRQSNRHLGKSIIHTDYETKNIFDAIQEACSLG
                     KFEADDTFNGGDTRTSTERFAEVINNPETWNVSAQKRFIDLNL"
     gene            9715..10401
                     /gene="neuA"
                     /locus_tag="ACFM6C_000721"
     CDS             9715..10401
                     /gene="neuA"
                     /locus_tag="ACFM6C_000721"
                     /EC_number="2.7.7.43"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acylneuraminate cytidylyltransferase"
                     /protein_id="HFC6158210.1"
                     /translation="MEKQNIAVILARQNSKGLPLKNLRKMNGISLLGHTINAAISSKC
                     FDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSNSGTVTL
                     LQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQINNGEYAPMRHLSD
                     LEQPRQQLPQAFRPNGAIYINDTASLIANNCFFIAPTKLYIMSHQDSIDIDTELDLQQ
                     AENILNHKES"
     gene            10402..11451
                     /gene="siaC"
                     /locus_tag="ACFM6C_000722"
     CDS             10402..11451
                     /gene="siaC"
                     /locus_tag="ACFM6C_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysialic acid capsule biosynthesis protein
                     SiaC"
                     /protein_id="HFC6158211.1"
                     /translation="MQNNNEFKIGNRSVGYNHEPLIICEIGINHEGSLKTAFEMVDAA
                     YNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVES
                     KGMIFISTPFSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTGMNSI
                     ESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHTLD
                     NYACLGAVALGGSILERHFTDRMDRPGPDIVCSMNPDTFKELKQGAHALKLARGGKKD
                     TIIAGEKPTKDFAFASVVADKDIKKGELLSGDNLWVKRPGNGDFSVNEYETLFGKVAA
                     CNIRKGAQIKKTDIE"
     gene            11535..13022
                     /locus_tag="ACFM6C_000723"
     CDS             11535..13022
                     /locus_tag="ACFM6C_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2,8-polysialyltransferase family protein"
                     /protein_id="HFC6158212.1"
                     /translation="MLKKIKKALFQPKKFFQDSMWLTTSPFYLTPPRNNLFVISNLGQ
                     LNQVQSLIKIQKLTNNLLVILYTSKNLKMPKLVHQSANKNLFESIYLFELPRSPNNIT
                     PKKLLYIYRSYKKILNIIQPAHLYMLSFTGHYSYLISIAKKKNITTHLIDEGTGTYAP
                     LLESFSYHPTKLERYLIGNNLNIKGYIDHFDILHVPFPEYAKKIFNAKKYNRFFAHAG
                     GISINNNIANLQKKYQISKNDYIFVSQRYPISDDLYYKSIVEILNSISLQIKGKIFIK
                     LHPKEMGNNYVMSLFLNMVEINPRLVVINEPPFLIEPLIYLTNPKGIIGLASSSLIYT
                     PLLSPSTQCLSIGELIINLIQKYSMVENTEMIQEHLEIIKKFNFINILNDLNGVISNP
                     LFKTEETFETLLKSAEFAYKSKNYFQAIFYWQLASKNNITLLGHKALWYYNALYNVKQ
                     IYKMEYSDIFYIDNISVDFHSKDKLTWEKIKHYYYSADNRIGRDR"
     gene            complement(13518..14471)
                     /locus_tag="ACFM6C_000724"
     CDS             complement(13518..14471)
                     /locus_tag="ACFM6C_000724"
                     /inference="COORDINATES: protein motif:HMM:NF042780.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6716 putative glycosyltransferase"
                     /protein_id="HFC6158213.1"
                     /translation="MHQYYDAVILSVGNGLLKRFFKQNAQLNIASRPLIITLFPGVVF
                     GDQASILSRMGADIVLYNNKHDFRIAEEYKKQYKLSCQNILYGYPIFRHASKGRHGEK
                     IYFIDQVKIPFKKEERIYTLKKLIALAEKYPEKEFTILLRVADKDITVHQDKHSYIEL
                     AKQFQLPSNLTIERKSTAQAFQEMGYCLSYSSTMLFEAECKGIPVGVVADLGFSKSYA
                     NQHFLGSGVLVYFDQIDFTSPKIADPDWLDCYATKKVITTDEFNKLLKQVVPLQHDYQ
                     EYLSAVNSIESTKTIFLRKFKKLIRDPKKFFYDSKWLRKVI"
     gene            14854..15873
                     /gene="galE"
                     /locus_tag="ACFM6C_000725"
     CDS             14854..15873
                     /gene="galE"
                     /locus_tag="ACFM6C_000725"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HFC6158214.1"
                     /translation="MKKILVTGGTGFIGSHTVVSLLKSGHQVVILDNLCNSSINILPR
                     LKTITGQEIPFYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPMKYYDNNV
                     SGSLVLAEEMARAGVFSIVFSSSATVYGDPGKVPYTEDMPLGDTTSPYGTSKSMVERI
                     LTDIQKADPRWSMILLRYFNPIGAHESGLIGEQPNGIPNNLLPYICQVAAGKLPQLAV
                     FGDDYPTPDGTGMRDYIHVMDLAEGHVAAMQAKSNVAGTHLLNLGSGRASSVLEIIRA
                     FEAASGLTIPFEIKPRRAGDLACFYADPSYTKAQIGWQTQRDLSQMMEDSWRWVSNHP
                     NGYDD"
     gene            15989..>16212
                     /locus_tag="ACFM6C_000726"
     CDS             15989..>16212
                     /locus_tag="ACFM6C_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HFC6158215.1"
                     /translation="MRKILVTGGAGFIGSAVVRHIIRNTQDSVVNLDKLTYAGNLESL
                     TDIADNPRYAFEQVDICDRAELDRVFAQHRP"
BASE COUNT         4695 a         3739 c         3270 g         4508 t
ORIGIN      
        1 ggccggtgtt gcgcgaatac gcggtcgagt tcggcgcggt cgcaaatatc cacttgttca
       61 aaagcatagc gaggattatc ggctacctca gtcaaagatt ccaaattgcc ggcataagtc
      121 agcttatcga cattgacgac agcgtcccgg gtgtttcgga taatatgacg gacaacggca
      181 gaaccgataa agcccgcgcc gccggtaacg aggatggttt ttttgtttgc ggtttgcatt
      241 taatccccat atccgttggg gttgcggctg acccaacgcc acgaatcttc catcatttgc
      301 tgcaagccgc gtttggtttc ccagccggtt tgttgtttgg tatgggacgg gtcggcaaag
      361 gaacacgcca agtctccggc gcgtcggggt tggatttgat agggaatatt taagccggat
      421 gcggcttcaa aggcacggat gatttccaaa acggaatagg cgcgccccga acccaagttg
      481 aacaaatgta cgccggcaac gccgcctttt gccttcattg ccgcgatatg cccttctgcc
      541 aaatccatca catgaatgta gtcgcgcatt cccgtaccgt cgggggtcgg ataatcgccg
      601 ccgaataccg acagttgcgg cagcctgccc gaagccactt ggcagatata gggcaaaagg
      661 ttgttgggaa taccgttggg ctgttcgccg atcaagccgc tttcgtgcgc cccaatcggg
      721 ttgaaatagc gcaacaaaat cacgctccaa cgcggatcgg ccttttggat gtcggttaac
      781 atccgttcca ccatcgcttt ggatgcgcca taaggattag cggtatcgcc cgggcgcata
      841 tcttccgtat agggcatttt acgtatcatg gcgcgacgca ttaaagtaaa cgccaaagcg
      901 cgtttatact ggttatccag tttccctata tttttacggt acaaatcaag ttgttggcat
      961 tcatcgtgaa aatagaattt ttcggcataa cgctgactca taaaaccggc atgcgggctg
     1021 cctgaaaaaa tcattgcgac atcatcgtca tttaatgttt catggttgtt ttctattaat
     1081 gctaaagcaa tttggtaatt aattgccaaa atatcgttag taatcacacg atagccgcgt
     1141 tttttggctt cataggcaaa ggaacagcct ccactaaata catctgcaac tgtatctaca
     1201 tcagacggaa gctggtcaca aatccaggaa gctattttct ctttattacc gatatagtta
     1261 attttcggat attgcttatt cattttcact catttttaaa atactttcag caatagcttt
     1321 tgccaataaa ggcggtacgg cgttaccaac ctgctgctgc tgggcaattt tgctgccgca
     1381 aaaaataaaa ttatcaggga aagattgtaa ggcagctaat tcacgaacgg ttaacgcccg
     1441 attctgttca tagtgaaaaa ctttgcgcat atctcctgta atacaaacgg ctggttttgt
     1501 tgctgttgta acggatgtat ttacggatat cacctgtttt cggacgtaat ggttcaggaa
     1561 tatcgttacg gttacctcca tttttaacaa atgccatttt ttctaacatt tgtgccgaat
     1621 gattcatagc ttcatgattt gcaacgtgtg gattgctttc gccagcagcc agttttggaa
     1681 aatgtcctat tgctgatcca acagtctgat gggaaatctg caaaggttcg ggaaaggaaa
     1741 ttttgccttt atccctcctc ccgataaata tcactcggct acgtatctga ggaacaccga
     1801 aatcggctgc actcagtatc ttacattcca ccgaataacc gatattctga aatgcttgaa
     1861 taatctcaat acgtgtttta cctgaattgt gtgtatagag tcgcgctaca ttttccataa
     1921 caaaaaaata tggttggaca attttaacta ttcggacaaa ctctttaaat aaatggttgc
     1981 gtgggtcatc tgtaaatgtc cgtccaatct ttcctgccat actaaaacct tgacaaggtg
     2041 gtcctccaat aatcaaatca actgcttgtc cgttaagaca attgattaaa tcttgttcgg
     2101 ttagtgtggt taaatctttt tgcagtaatt gatgatgggg gaagttggta cggtaagtct
     2161 gacaataatc agactccatt tcaacagaaa gcaattgttg gaatccggct tgttcaaaac
     2221 ccaaggatag gcctcctgct cctgagaaaa ggtcaatata ggtaagtggt gtgtgcataa
     2281 gtcaaaatcc ataaactctt cgattatttt accgcttcag cttcgcaaac gcatccgcca
     2341 tcgccgaatt ggctggggcg cggtcgttgc gttggggttt gcggccggct gtccgttcgc
     2401 ggctgcggtt ttcagacggc attttatgtt ttgcgccgcc cggttcgtca tccaagcgca
     2461 tggtcagcgc gatgcgtttg cgtgcagcat cgacttccag cactttcact ttcaccacgt
     2521 cgccagcttt caccacttcg cgcgggtctt ggacgaactt gttggacagg gcggagatgt
     2581 gcaccaagcc gtcctgatgg acgccgatgt ccacgaacgc gccgaagttg gcgacgttgg
     2641 aaaccacgcc ttcgagtatc ataccgactt gcaagtcgct gatttcgtgg ataccttcgg
     2701 caaacgatgc cgtctgaaac tcgccgcgcg gatcacggcc aggtttttcc agttcggaca
     2761 ggatgtccaa aatggtcggc aggccgaagc gttcgtcggt gaagtcggac gctttgattt
     2821 gcttcacgcg ctcgcggttg ccgatgagtt cggcggcgct aatgccttgt tgcgccagca
     2881 ttttggcgac gacgggatag gcttcggggt ggacggcgct cgcgtccaac ggctctttac
     2941 cgccgttaat ccgcaaaaag cctgccgcct gctcgaaggt tttttcgccc aaacgcggta
     3001 ctttcagcaa ttttttgcgg ctgtcgaacg cgccgttttc atcgcggtag gcaacgatgt
     3061 tttgggcaag ggtttgattc aaaccggaaa ttcgcgccaa gagcggggcg gaggcggtgt
     3121 tcacgtccac gccgacggcg ttcacgcagt cttcgaccac cgcgtccagc gatttggcga
     3181 gctggctttg gttcacgtcg tgctgatact gccccacgcc gatggatttg gggtcgattt
     3241 tgaccaactc ggcaagcggg tcttgtagcc tgcgggcgat ggacaccgcg ccgcgcaggg
     3301 aaacgtccaa gtcggggaac tcgcgcgccg ccagttcgga cgcggaataa atcgacgcgc
     3361 cggcttcgga cacgacgatt ttatgcagcc ccattttcga catttcacgc accagttcgc
     3421 ccgcgatttt gtcggtttca cggctggcgg tgccgttacc gatggcgatg agcttcacgc
     3481 cgtgctgttt aatcaggcgc gacagcgttg ccaacatatt gttttcttga tgcaaataga
     3541 cgatgacggt atccagcagc ttgccggtgt cgtccaccac ggcgcatttc acgccgttgc
     3601 ggtagccggg atcgagaccc agcgtggtca gccgtccggc gggcgcagca agcagcaagt
     3661 ctttgagatt gcgggcgaac acggtaatcg cgtcggtgtc ggcggcttct ttcaaacgat
     3721 tgagagcttc aagttccaac gacaaaaaga ttttcgcgcg ccaagtcagg cgcacggtgt
     3781 cgcgcagcca tttgtggccg tctgaaactt tgaagcggcg ggcgatgatt tgctcgtatt
     3841 cgctttgctg cgtaatcggc gtgtcgtcgg gctgatattt gagcgcgatg ttcaacacgc
     3901 cttcgttgcg tccgcgcaaa accgctagcg cacgatggct gggcatcgca cgaataggtt
     3961 cgcggtggtc gaaataatcg ctgaattttt cgccttcggt ttctttgcct ccaacaactt
     4021 gcgcatggat ttcggcttcg ttccacaact tatcacgcag cgtgccgatg agttccgcgt
     4081 cttcggcaaa ctgctccatc agaatcgcac gcgcaccgtc caacgcggct ttggcatcgg
     4141 ggacgttttc gttcaggtag ccttgcgcgg cagcttccac gtccagcggc tgctcggcaa
     4201 gcaacacgtc cgccagcggc tgcaaaccgt gttcgcgcgc gatttgcgct ttggtgcggc
     4261 gtttgggttt gtagggcaga tacaggtctt ccagcgcggt tttgttatcg gcggcttcga
     4321 tttgcgccct gaggtcgtct gaaagcttgc cttgctcttc aatgcttttt aaaacaacgg
     4381 ctttgcgctc ttccaactcg cgcagatatt gcagccgctc ggcaagccgg cgcaactgcg
     4441 tatcgtccaa cccgcccgtc gcttccttgc ggtagcgggc gataaacggc acggtcgcgc
     4501 cgtcgtccaa aagctcgacg gcggcggtga tttgcgcggc agtcgcggag agttcttggg
     4561 aaagaatttg agtaatgttc atcaatagaa ttccaacgga caggccgtct gaaatttcag
     4621 acggcctgat ttaaaaacaa tcgctttaag gcagcgaatt ataatattcg taggctttgt
     4681 ccatatcttc aaactggtac atatgccctt tttccagcac catcgcatta tcgcaatatt
     4741 gcttcatggc gctgtggctg tgcgacacca agatgatgga acggtctttg cgcttttcaa
     4801 acaactcgta cttacattta tcggcaaaac gcgagtcacc aactgcaatc acttcgtcaa
     4861 tcaaatagca atcaaactct accgccaacg acaaagcaaa tgccaaacgc gccttcatac
     4921 ctgaagaata acgcttgacc ggctcgtaaa gatattgccc caactcggaa aactcttcgg
     4981 taaagttctt cacataatcg atatcgacat tgtaaatccg gcagatgaaa cgcaaattgt
     5041 ccataccggt cagactgcct tgaaacgcac cggagaatgc caaaggccaa gaaatactca
     5101 ttgtccgctt gatttcaccc gtggtcggcg gctcaacgcc actgatcaaa cggatgagcg
     5161 tcgatttacc tgcaccgttg cggccgagaa taccgatttt ctcgcccttc tccattttga
     5221 agctaatatc gtgcaagact gtccgccaac cttggcgggt cagatagcgt ttggaaacgt
     5281 gttcaactga aatcattgcg gctcaacccc tttgctgaat ctcgccacca ccgccaaacc
     5341 aagcagcagc aaaaccaagt tacacaacaa aatataccaa ggattttcgt aagtcgtgac
     5401 gctgtcgcca aaatatccgg cacggaacat ttctgtgcca tgcaccatcg ggatcatcaa
     5461 tgcatactct tgcactttcg gaggcaaatt atgtacaaaa aagaatgcac ccgataacgg
     5521 catcatcaca aaagtcaatg tgccccaaat cttgccaaac ggctcgaaat taaaggcaat
     5581 cgaacaaatc accaaaccca aaccaatcgc aaaaaaagcc atcaaaagcc aagccatcag
     5641 catataaaac atatctgccg gcatttcaat ccagccaatc gcaatcaata ccgccataat
     5701 cacaatctgc gcaatggttg caccagcaat ttccaaaatc atgcgcgcca agatggtatc
     5761 caaaactctt acattgcggt gataaagcaa gctggcattt gaagaaatcg acccaactgc
     5821 ccgttttgag gcattacgcc acatcatcaa catcggatag ccagtaatcg caaatgcgac
     5881 aatattcaaa gttgaatatc ggtctgcctt taaaaatttc cacatcaaga cgataacgaa
     5941 tgtcatcagc aacggctcaa caaacagcca taaaaagcca atattattgc gaccgtaacg
     6001 ggtgataatt tcccgcatca aaagcgcacc gattacgcgc ctttgaatgg ctaaagattc
     6061 ccaaaatgat gttttatgca aggctttcat cagtttttat gctcacgaat gctggcagtc
     6121 aacaggctca aaataccata aaccatcaag ccgataatca gagtggcaac aatgttgtat
     6181 aaccgtttag gctcatgtgc caaatccggc aggctcggtt gcgagatcac ttccaaataa
     6241 agctgctgac ggtctgcttc aaccttggca ctttccaaag aagtcatggc ggctgccaac
     6301 tgctgctctg ccaactggtt ttccaaatac acacgctgat attcggcagc ctgattagac
     6361 aacgaagaat gcccaccgcc cgaaatggca cgtaactgtt ggtcaatttc tttacgcaag
     6421 ctctgctcac gcgcctgcaa acccggaatc tgcggattct ccggagtgac tgctttcacc
     6481 tgatccagct gggtttgaat cacaatcaat tcatcttgca gcttggaaac caaccccatt
     6541 tgcacttccg attgcgcttt caaatcaaaa acgccattgg caatccggta atccgtcaga
     6601 ttctgagagg cttcctttac ccgctctgcc gccgttttca ctacttcttc cgcatagcgc
     6661 accgtatcag cacgtgcacg atcgttcaac tggttaatca atgcttcacc ttgttttaac
     6721 aaagcctcat tgattttctt agattccagc gcatcaaagg aagttacatt caacgtggaa
     6781 atacccgaaa ccgtatcaaa attgatcatc acctgatttt tatagtattg ataaaaagcc
     6841 tcttcctcgc cacggaatcc aaaaccatta aatcggctaa atacatcgcc cttagtttca
     6901 taaaattcac gcaccggcaa gattttacgc agttcatcca aagacgagcg cgaacgcata
     6961 tactccccaa ccgtgtaaat atcatcttgc gcacgggcaa aacctgtgcc ctgcaaaatg
     7021 gcacccaggc cattgagaga agattggctt ttaggcgagc gcaccacaaa gctcgattgc
     7081 gacgtaaaac gatcggaagc gaagaagccg aaatacacca acgaaattac cgtagggata
     7141 atcaccgtta cccaaaataa agggcttagc tttttaatcc aacttttctt tttcggcttt
     7201 ttacgctcgg ctttggtttc agtggcaact gccacaggaa gttgctcaga catcttaatt
     7261 actcacatta attagttaaa ttattaatac tgttcgcgcc actggtaacc ggcgagaaca
     7321 caaacgacaa gaatttctgc acttcagcca acggcgcatt cgacacatac aatacatctt
     7381 tattcttcac aggaaagcgc tgcatagaaa atagcgaatg cgcatcagcc atattcacac
     7441 gatataccgt tggaatctct gcctcactgc cataaccttg agcaatccat ttatcctgac
     7501 gttctgccgg caattccacc aatggcgtat agcggaacac aaacacacca cgcgcatcag
     7561 aacggcgatc ttgcaaaccg cccatacggc caatggcttc agaaagcgat aagcctctgg
     7621 ctgaaaaacc gatttcttgt gttctcccca ccgcacccat agacgtaaag gtatagggat
     7681 tggtaatcat ggtaaccaca tcaccgcgac gcagcaaaat attttgtcgc ggatttgcaa
     7741 ctaaatcttc caaggcaaca gttcgtacta cattgccacg tgtcagctgc acattcgtat
     7801 cctgcacatt tgccgttgaa ccacctaccg cagccaccgc atccaacaca cgctcaccgg
     7861 ctgccgtcag cggcatacgc acactattcc cagcacgaat caccgacaca ttcgccgcat
     7921 tattctgcac caaacgcacc atcacttgtg gctgattggc catttttttc aggcggcctt
     7981 taataatttc ctgaacctga ccaggcgttt taccgaccac cgaaatatcg ccaacaaacg
     8041 gcacagaaac cgtaccacgt gccgtgacca actgctctgg caacttagtt tgatgcgcac
     8101 tacccgagcc catcgaagaa aggccaccac caaacaatac tgccggcggc gcttcccaaa
     8161 tcataatatc caatacatca ccaatattta gcgtaccagc cgaagcataa ccatcgccaa
     8221 actgagtgaa tgactgattt atctgagcct tatataataa ctgagcaacc gtatgattca
     8281 catcaatcag ctccacttca ggaatttgaa cttcagattg ttgccctaaa gagacaattt
     8341 tttttgcgct ggggcctgat gaaggaatcg cagagcatcc tacaattaaa cttccacaca
     8401 ataataatac tgcgtgacga atataaaatt tcactttaaa cacaagccaa atcctaatat
     8461 aattataaat ggcctaatta tagcacttaa tcgaaataaa tttatgagta cgtagagtat
     8521 aattagtatt cttctttcca acttccttat acttatatac ttatagattc taaaatcatg
     8581 aaaagaattc tttgcattac aggtaccaga gccgacttcg gcaagctaaa acctttatta
     8641 gcctatattg aaaatcaccc agaccttgaa ttgcatttga ttgtaactgg tatgcatatg
     8701 atgaaaacat atggcagaac ctgcaaggaa gtaactcgag aaaactatca acatacatat
     8761 ctgttttcaa atcaaatcca aggtgaacca atgggtgccg ttttaggcaa taccattacg
     8821 tttatctctc gtctatctga tgaaattgaa cctgatatgg tcatgattca cggcgaccgt
     8881 ttagaagcac tagcaggcgc aactgtaggt gcattaagca gccgtttagt ttgccatatc
     8941 gaaggtggtg aactatctgg tacagtagat gactccattc gtcattctat tagtaaactt
     9001 tctcatatcc acttggtagc aaatgaacaa gctgtcactc gcctagtgca aatgggagaa
     9061 aaaagaaagc atattcacat catcggctcc cccgatttag atgttatggc ctcttccacc
     9121 ctcccatcct tagaagaagt caaagaatat tacggtttac catacgaaaa ttatggtatt
     9181 tctatgtttc accccgtgac tacagaagca catttaatgc cacaatatgc ggcccaatat
     9241 ttcaaagcat tagaattaag tggccaaaat atcattagca tttaccctaa caacgacacg
     9301 ggtactgaaa gtattctgca agaattatta aaatatcaat ctgataaatt tattgcattt
     9361 ccttccattc gatttgaata ttttttagtc ttattgaaac atgctaaatt tatggtcggc
     9421 aactcaagtg caggtattag agaagctcct ctctacggtg tcccttcaat tgatgttggt
     9481 acccgccaaa gtaaccgcca tctaggaaag tctattattc atacagatta tgaaacgaaa
     9541 aatatctttg atgcgattca agaagcatgt agcctaggca aatttgaagc agatgatacc
     9601 tttaatggcg gagatactcg caccagcaca gaaagatttg ctgaagtaat caacaatcct
     9661 gaaacgtgga atgtttctgc tcaaaaacgt tttatcgatt tgaatcttta aattatggaa
     9721 aaacaaaata ttgcggttat acttgcgcgc caaaactcca aaggattgcc attaaaaaat
     9781 ctccggaaaa tgaatggcat atcattactt ggtcatacaa ttaatgctgc tatatcatca
     9841 aagtgttttg accgcataat tgtttcgact gatggcgggt taattgcaga agaagctaaa
     9901 aatttcggtg tcgaagtcgt cctacgccct gcagagctgg cctccgatac agccagctct
     9961 atttcaggtg taatacatgc tttagaaaca attggcagta attccggcac agtaacccta
    10021 ttacaaccaa ccagtccatt acgcacaggg gctcatattc gtgaagcttt ttctctattt
    10081 gatgagaaaa taaaaggatc cgttgtctct gcatgcccaa tggagcatca tccactaaaa
    10141 accctgcttc aaatcaataa tggcgaatat gcccccatgc gccatctaag cgatttggag
    10201 cagcctcgcc aacaattacc tcaggcattt aggcctaatg gtgcaattta cattaatgat
    10261 actgcttcac taattgcaaa taattgtttt tttatcgccc caaccaaact ttatattatg
    10321 tctcatcaag actctatcga tattgatact gagcttgatt tacaacaggc agaaaacatt
    10381 cttaatcaca aggaaagcta aatgcaaaac aacaacgaat ttaaaattgg taatcgttca
    10441 gtaggttaca accacgaacc attgattatc tgtgaaatcg gcatcaatca tgaaggctct
    10501 ttaaaaacag cttttgaaat ggttgatgct gcctataatg caggcgctga agttgttaaa
    10561 catcaaacac acatcgttga agacgaaatg tctgatgagg ccaaacaagt cattccaggc
    10621 aatgcagatg tctctattta tgaaattatg gaacgttgcg ccctgaatga agaagatgag
    10681 attaaattaa aagaatacgt agagagtaag ggtatgattt ttatcagtac tcctttctct
    10741 cgtgcagccg ctttacgatt acaacgtatg gatattccag catataaaat cggctctggc
    10801 gaatgtaata actacccatt aattaaactg gtggcctctt ttggtaagcc tattattctc
    10861 tctaccggca tgaattctat tgaaagcatc aaaaagtcgg tagaaattat tcgagaagca
    10921 ggggtacctt atgctttgct tcactgtacc aacatctacc caacccctta cgaagatgtt
    10981 cgattgggtg gtatgaacga tttatctgaa gcctttccag acgcaatcat tggcctgtct
    11041 gaccatacct tagataacta tgcttgctta ggagcagtag ctttaggcgg ttcgatttta
    11101 gagcgtcact ttactgaccg catggatcgc ccaggtccgg atattgtatg ctctatgaat
    11161 ccggatactt ttaaagagct caagcaaggc gctcatgctt taaaattggc acgcggcggc
    11221 aaaaaagaca cgattatcgc gggagaaaag ccaactaaag atttcgcctt tgcatctgtc
    11281 gtagcagata aagacattaa aaaaggagaa ctgttgtccg gagataacct atgggttaaa
    11341 cgcccaggca atggagactt cagcgtcaac gaatatgaaa cattatttgg taaggtcgct
    11401 gcttgcaata ttcgcaaagg tgctcaaatc aaaaaaactg atattgaata atgcttatta
    11461 acttagttac tttattaaca gaggattggc tattacatat agctaattct cattaatttt
    11521 taagagatac aataatgcta aagaaaataa aaaaagctct ttttcagcct aaaaagtttt
    11581 ttcaagattc aatgtggttg acaacatctc cattttatct taccccccca cgtaacaatt
    11641 tatttgtcat atctaattta ggtcagctta accaagtcca aagcctaatt aaaatacaaa
    11701 aattaaccaa taatttacta gtaattttat atacttctaa aaacttaaaa atgcctaagt
    11761 tagttcatca atcagctaac aagaatctat ttgaatctat ttatctattt gagcttccta
    11821 gaagccctaa taatataact cctaaaaaat tactttatat ttatagaagt tacaaaaaaa
    11881 tccttaatat tatacagcct gctcatctct atatgctgtc ttttacaggc cactactcct
    11941 atctgattag tattgcaaaa aaaaagaata ttacgactca tttaattgat gaagggactg
    12001 gaacatatgc tcctttatta gaatcatttt catatcatcc aacaaaatta gaacgttatt
    12061 tgattggaaa taatcttaat attaaaggat atatagatca ttttgacata ttgcatgtcc
    12121 cctttcctga atatgctaaa aaaatattta atgcaaaaaa atataaccgg ttttttgcgc
    12181 atgctggagg aataagcatt aataataaca ttgcaaactt acagaaaaaa tatcaaatat
    12241 ctaaaaatga ctatattttt gttagtcaac gctaccccat ttcagatgat ttgtattata
    12301 agagtatagt agaaatctta aacagcataa gtttacaaat taaaggaaag atatttatta
    12361 aactacaccc aaaagagatg ggtaacaact atgtaatgtc tttatttcta aatatggtag
    12421 aaataaaccc tcggctggta gttattaatg aacctccttt tctaattgag cccctaatat
    12481 acttaacaaa tcctaaagga attataggcc tggcctctag ttctttaatt tatacaccat
    12541 tactctcacc ctcaacccaa tgtctttcta ttggagagtt aattattaac ttaattcaaa
    12601 aatattcaat ggtggaaaac actgaaatga tccaagaaca cttagagatt attaagaaat
    12661 ttaattttat taatatacta aatgatttaa atggggtaat aagtaaccct ctctttaaaa
    12721 cagaagaaac atttgaaaca cttcttaaat ctgcagaatt cgcatataaa tctaaaaact
    12781 actttcaggc tattttttac tggcaacttg ccagcaaaaa caatattacc ttattagggc
    12841 ataaagcatt atggtactac aatgcacttt ataatgtaaa acaaatttat aagatggaat
    12901 attcagatat tttttatatc gataatatct ccgtagactt tcatagtaaa gataaattga
    12961 catgggaaaa aattaaacat tattactatt ccgccgacaa tagaattggt agagatagat
    13021 aaaaatacta tgacttctga tctccatacg tatgcttgtt ttcaaaaagc agcattaaga
    13081 tagataagtg aagcttgatg agagccattt ttgtggtcat cgccaaggta cacgcggaga
    13141 gtaatcgaca acagagctgc tgtattctgg cttttaaagc ccagtagtaa agtttataag
    13201 gctgcatttc tcaatgtaaa acgcgatatt ttcacccatt attagggata agtagccagt
    13261 ggtttacact ggctactttc atagttatga agtactgggt ctgagtgaat tcaattattt
    13321 ccgtataaaa cacagtagac attttactaa tcggcaaaat tatattagaa gaattgagaa
    13381 ctactgaagt caggtaagat accattttgc acaaatttaa cggcatccct aaaaagcatt
    13441 ttgggtggta tttaaaggag tacaaaatgg ttttaactac agtatgctta gaaatctata
    13501 gccttacgcg ctttatatta aatcaccttt ctcaaccatt tagaatcata aaaaaacttt
    13561 ttaggatccc taattaactt tttaaatttt cttaaaaaaa tagttttagt tgattctata
    13621 ctattcaccg cagataaata ttcttggtaa tcatgttgca atggcacaac ctgctttaat
    13681 agcttattaa actcatcagt tgtaatcacc tttttagtag catagcaatc aagccaatcc
    13741 ggatctgcta tttttgggga agtgaaatct atttgatcaa aataaactaa aaccccacta
    13801 cctaaaaaat gctgatttgc ataggattta gaaaagccta agtctgcaac aacaccaaca
    13861 gggataccct tacattcagc ttcaaaaagc atagtagatg aataagataa acaatacccc
    13921 atttcttgga aggcttgcgc ggtacttttt cgctctattg tcaaattact cggcaactga
    13981 aactgctttg ccagctctat atacgaatgt ttatcctgat gcacagtaat atctttatct
    14041 gcaaccctta gcaaaatagt aaattctttc tcagggtatt tttcagccaa ggcaatcaat
    14101 ttttttaatg tataaattct ttcttctttt ttaaatggga ttttaacttg gtcaataaag
    14161 taaattttct ctccatgacg accttttgat gcgtggcgaa aaattggata accataaagt
    14221 atattttgac aacttaattt atattgtttc ttatattcct ctgcaattct aaaatcatgc
    14281 ttattattat ataaaacaat atcagccccc atacgagata gaatacttgc ctgatcaccg
    14341 aatactacac ctggaaacaa ggtaataatc aatggccttg aagcaatatt taattgcgca
    14401 ttctgcttaa agaacctttt taacaaccca tttccaaccg ataaaattac tgcgtcataa
    14461 tattgatgca tattcttaat aaagtaatca tcaatatgaa aaaaaaaatt gcttggtctt
    14521 tatctatccc tgattctaat aactgtcgat ttgaaagaat gttttctcga cttttgtgga
    14581 tataaatatc aatttgagca tcttttatct cttttgcaac agcatagccc gagttaagga
    14641 acgagtcata actggcaatt agtaatactt ttttcactat tttcccttaa ttctacacca
    14701 tatgaataaa attatagtat tttaccttag atatcaaata tacttaacca aaaaaatctg
    14761 aagaaatcta ctgctacttc agggataatt atttcattaa gattttacaa ccattattat
    14821 caatctatca aagtattttt agtattttat tctatgaaaa aaattctcgt taccggcggc
    14881 accggtttta tcggctcgca taccgttgtt tctttgctga aaagcggcca tcaagtcgtg
    14941 attttggata acctatgcaa ttccagcatc aatatcctgc cacgcttgaa aacgattacc
    15001 ggccaagaga ttccgtttta tcaaggcgat atccgcgatc gtgagatttt gcgccgtatt
    15061 tttgcggaaa accgcattga ttcggtgatt cattttgccg gcttgaaagc ggtgggtgaa
    15121 agtgtggccg agccgatgaa atattatgat aataatgttt ccggcagctt ggtgttggcg
    15181 gaagaaatgg cgcgtgcggg cgtgtttagc attgtgttca gttcttcggc gacggtttat
    15241 ggcgatccgg gcaaagtgcc ttataccgag gatatgccac tgggcgatac caccagccct
    15301 tacggcacat cgaaatcaat ggttgagcgc attctcactg acattcaaaa agccgatccg
    15361 cgctggagca tgattttgtt gcgttatttc aatccaattg gcgcgcatga aagcggcttg
    15421 attggcgagc agccaaacgg tatcccaaat aatttgttgc cttatatctg ccaagtggcg
    15481 gcaggcaaac tgccgcaatt agcggtattc ggcgatgact accctacccc tgatggcacg
    15541 ggtatgcgcg actatattca tgtgatggac ttggctgaag gccatgtcgc cgccatgcag
    15601 gcgaaaagca atgtagcagg cacgcatttg ttgaacttag gttccggtcg cgcttcttcg
    15661 gtattggaaa tcatccgcgc atttgaagcg gcttcgggtt taaccattcc atttgaaatc
    15721 aaaccacgcc gtgcgggcga tttggcgtgt ttctatgctg acccttctta tacgaaggca
    15781 caaatcggtt ggcaaactca gcgtgattta agccaaatga tggaagattc atggcgctgg
    15841 gtaagtaatc atccgaatgg ctacgacgat taagttgacc tgatacaggc cgtctgaaag
    15901 agatgttttc agacggcctc tttatctgaa aaacacacat tctgtctgct ataatctgtt
    15961 tatatttttt ggctatcctc tgaaatttat gagaaaaatc cttgttaccg gcggtgcggg
    16021 ctttatcggt tctgccgttg tccgtcatat tatccgaaac acccaagatt ccgtcgtcaa
    16081 cctcgacaaa ctgacctacg cgggcaatct cgaatcgctg accgacattg ccgataatcc
    16141 ccgctatgct ttcgagcaag tggacatttg cgaccgcgcc gaactcgacc gcgtattcgc
    16201 acaacaccgg cc
//
LOCUS       DAXHPV010000031        16167 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.031, whole genome shotgun sequence.
ACCESSION   DAXHPV010000031 DAXHPV010000000
VERSION     DAXHPV010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16167)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16167)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16167
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.031"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(261..1340)
                     /gene="apbC"
                     /locus_tag="ACFM6C_000727"
     CDS             complement(261..1340)
                     /gene="apbC"
                     /locus_tag="ACFM6C_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017146699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HFC6158216.1"
                     /translation="MNIQNIRTLLDTVAVPNTARTLGGEKAVRSVEQRSDGIHIALHF
                     GFPVAHIASETADRIQEILMPETGDTHIHLSMDTEIGTHKVQPGVTTIKGVKNIIAVA
                     SGKGGVGKSTTTANLAAAMARMGARVGVLDADLYGPSQPTMLGVDDRKPDQKNQKLIP
                     VESSDGIQVMSIGFLVDTGQAVVWRGPMVSQALQQLMFQSEWDEVDYLFIDLPPGTGD
                     IQLTLSQRIPVTGSVIVTTPQDIALIDARKAVDMFRKVNIPILGVLENMSVHICTNCG
                     HSEALFGTDGGKDLAARLNVPLLGQLPLSLPVREAMDGGTPAQLFDEHPAIAKIYTDA
                     AFQIALSIADKGKDFSSRFPKIVVE"
     gene            1551..1626
                     /locus_tag="ACFM6C_000728"
     tRNA            1551..1626
                     /locus_tag="ACFM6C_000728"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1584..1586,aa:Lys,seq:ttt)
     gene            1705..2214
                     /locus_tag="ACFM6C_000729"
     CDS             1705..2214
                     /locus_tag="ACFM6C_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein disulfide oxidoreductase"
                     /protein_id="HFC6158217.1"
                     /translation="MKKKLLSGIKFAVQTALVFLLVSLFLDWIRKPEEPAGAAGRPLT
                     LLSGQRLTLGQFSRDKAVLVYFWGSWCGVCRYQSPIIDDLAADGVPVVGVAVRSGSAS
                     EVAAYMAKRGLGFPTVNDEDGGLARSWRIVATPAVVLVKNGKMVHYTTGISSYWGLRA
                     RIFQADVFG"
     gene            2557..2997
                     /gene="nadR"
                     /locus_tag="ACFM6C_000730"
     CDS             2557..2997
                     /gene="nadR"
                     /locus_tag="ACFM6C_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family adhesin repressor NadR"
                     /protein_id="HFC6158218.1"
                     /translation="MPTQSKHASINISLIQAREALMTQFRPILNQANITDQQWRIIRL
                     LAENGTLDFQDLANQACILRPSLTGILTRLEKAGLVVRLKPSNDQRRVFLKLTAEGEK
                     LYEEIGEEVDERYDAIEEVLGREKMLLLKDLLAELAKIEDALNS"
     gene            3112..3612
                     /gene="hpaC"
                     /locus_tag="ACFM6C_000731"
     CDS             3112..3612
                     /gene="hpaC"
                     /locus_tag="ACFM6C_000731"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0042537 - benzene-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     reductase component"
                     /protein_id="HFC6158219.1"
                     /translation="MADLQKTFQTSFRDAMASCAAGVHVITTDGAAGRYGITMTAVAP
                     VTDEPPTVMLCINRKARIIPILSENGSLCINTLADEHQDVAEHFAGLTGLSPEERFAY
                     HIWHRGKTGQLEIEGALAHLHGHIVGKHEIGTHFVFYVRLDEIKNCGCKRPALLYFRR
                     QFRFLD"
     gene            3628..4323
                     /gene="murU"
                     /locus_tag="ACFM6C_000732"
     CDS             3628..4323
                     /gene="murU"
                     /locus_tag="ACFM6C_000732"
                     /EC_number="2.7.7.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramate alpha-1-phosphate
                     uridylyltransferase MurU"
                     /protein_id="HFC6158220.1"
                     /translation="MKAMILAAGRGERMRPLTDTTPKPLLDVAGKPLIGWHLCRLKQA
                     GFTEIVINHAWLGRQIEDALGDGSAYGVNIAYSPEPAGGLETAGGIAQALPLLGGQPF
                     LVVNGDVLTDIDFTAAFQTASSLPEHISAHLWLVENPPHNPDGDFSLLPDGSVRPEVN
                     GGNGLTFSGVGIYRPEMFDGIEAGSVAKLAPVLRGEMRQNRVSGQKHTGLWLDVGTVC
                     RLKEAQALAGAWK"
     gene            complement(4568..4993)
                     /locus_tag="ACFM6C_000733"
     CDS             complement(4568..4993)
                     /locus_tag="ACFM6C_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HFC6158221.1"
                     /translation="MGSNAWLFWALAGFASLTAVFAKMGLQGIDSDFATFIRTLVILA
                     ALVLFLTYTGKWQGVNGFTGRNWTFLILSGLATGASWLAYFKALQLGNASQVAPVDKF
                     SLVLVALMAVVFLDERPNTQEWIGLGLVTAGVLVLALKR"
     gene            5168..6844
                     /locus_tag="ACFM6C_000734"
     CDS             5168..6844
                     /locus_tag="ACFM6C_000734"
                     /EC_number="6.3.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004329 - formate-tetrahydrofolate ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HFC6158222.1"
                     /translation="MSFKTDAEIAQSSTMRPIGEIAAKLGLNVDNIEPYGHYKAKINP
                     AEAFKLPQKQGRLILVTAINPTPAGEGKTTVTIGLADALRHIGKDAVIALREPSLGPV
                     FGVKGGAAGGGYAQVLPMEDINLHFTGDFHAIGAANNLLAAMLDNHIYQGNELDIDPK
                     RVLWRRVVDMNDRQLRNIIDGMGKPVDGVMRPDGFDITVASEVMAVFCLAKDISDLKE
                     RLGNILVAYAKDGSPVYAKDLKAHGAMAALLKDAIKPNLVQTIEGTPAFVHGGPFANI
                     AHGCNSVTATRLAKHLADYAVTEAGFGADLGAEKFCDIKCRLADLKPDAAVVVATVRA
                     LKYNGGVERANLGEENLEALAKGLPNLLKHISNLKNVFGLPVVVALNRFVSDSDAELA
                     MIEKACAEHGVEVSLTEVWGKGGVGGADLARKVVNAIENQPNNFNFSYDVELSIKDKI
                     RAIAQKVYGAEDVDFSAEASAEIASLEKLGLDKMPVCMAKTQYSLSDNAKLLGCPEGF
                     RIAVRGITVSAGAGFIVALCGNMMKMPGLPKVPAAEKIDVDAEGVIHGLF"
     gene            6959..8050
                     /gene="ychF"
                     /locus_tag="ACFM6C_000735"
     CDS             6959..8050
                     /gene="ychF"
                     /locus_tag="ACFM6C_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002642527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HFC6158223.1"
                     /translation="MSLKCGIVGLPNVGKSTLFNALTQSGIEAANYPFCTIEPNVGIV
                     EVPDPRMAELAKIVNPQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVN
                     VVRCFDDDNIVHVAGRVDPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQK
                     LVELCKKLLPHLDEGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFENNPH
                     LERLKELAAKENAPVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDL
                     LGLQTYFTAGVKEVRAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEA
                     KAKEAGKMRVEGKEYVVQDGDVMHFLFNV"
     gene            8320..10188
                     /locus_tag="ACFM6C_000736"
     CDS             8320..10188
                     /locus_tag="ACFM6C_000736"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HFC6158224.1"
                     /translation="MSQALPYRPDIDTLRAAAVLSVIVFHIEKNWLPGGFLGVDIFFV
                     ISGFLMTAILLREMSGGGRFSLKAFYIRRIKRILPAFFAVLAATLIGGFFLFTKDDFF
                     LLWKSALTALGFASNLYFARGKDYFAPAQEEKPLLHIWSLSVEEQFYFVFPILLLLVA
                     RKSLRVQAGFLAALCALSLATSFIPSALDKYYLPHLRACEMLVGSLTAVWMRCRQPAV
                     GRRCAAAGALFAVCILSTCLFSYSEQTAYFPGPAALIPCLAVAALIYFNHYEHPLKKF
                     FQWKITVAAGLISYSLYLWHWPILAFMRYIGPDNLPPYSPAAAIVLTLAFSLISYHCI
                     EKPFKKWKGSFAQSVLWIYALPMLILGAGSFFAMRLPFMAQYDRLGLTRSNTSCHNNT
                     GKQCLWGDTEKQPELLVLGDSHADHYKTFFDAVGKKEKWSATMVSADACAYVEGYVSR
                     VFQNWAACRAVYRYAEEHLPRYSKVVLAMRWGSQMPENSRSLAYDAGFFQKFDRMLHK
                     LSSEKQAVYLMADNLASSYNVQRAYILSSRIPGYRQALRPDDESTLKANARIRELAAK
                     YPNVYIIDAAAYIPADFQIGGLPVYSDKDHINPYGGTELAKRFSEKQRFLNTRHNH"
     gene            10250..11545
                     /gene="tyrS"
                     /locus_tag="ACFM6C_000737"
     CDS             10250..11545
                     /gene="tyrS"
                     /locus_tag="ACFM6C_000737"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HFC6158225.1"
                     /translation="MSVIQDLQSRDLIAQTTDIEALDALLNEQKIALYCGFDPTADSL
                     HIGHLLPVLALRRFQQAGHTPIALVGGATGMIGDPSFKAAERSLNSAETVAGWVESIR
                     NQLTPFLSFEGGNAAIMANNADWFGSMNCLDFLRDIGKHFSVNAMLNKESVKQRIDRD
                     GAGISFTEFAYSLLQGYDFAELNKRHGAVLEIGGSDQWGNITAGIDLTRRLNQKQVFG
                     LTLPLVTKSDGTKFGKTEGGAVWLNAKKTSPYQFYQFWLKVADADVYKFLKYFTFLSI
                     EEIDAIEAKDKASGSKPEAQRILAEEMTRLIHGEEALAAAQRISESLFAEDQSSLTES
                     DFEQLALDGLPAFEVSDGINVVEALVKTGLASSNKEARGFVNSKAVLLNGKPAEANNP
                     NHAAERPDDACLLNGEHKRFGKYTILRRGKRNHALLVWK"
     gene            12072..12992
                     /gene="ribF"
                     /locus_tag="ACFM6C_000738"
     CDS             12072..12992
                     /gene="ribF"
                     /locus_tag="ACFM6C_000738"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003919 - FMN adenylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HFC6158226.1"
                     /translation="MKIRLGRHNAPDFPQGAAVTIGNFDGVHLGHKHILQKLRLEADA
                     RGLPVVAVIFEPQPKEFFAALAGKTPPCRISPLRTKLELLEGTGCVDAVWVLGFDQNF
                     SEISAQGFIDRLLRQTLNTRYLLVGDDFRFGAGREGCFELLAQQPDMQTERTPSVIVE
                     DIRTSSTAVRQALSDGNLAYAKKLLGHDYVLGGRVVHGRKLGRTLNAPTANIRLPDHR
                     YALGGVFVVDADGAFGTRRGVASFGFNPTVDSGCSQKLEVHLFDFQGDLYGQRLNVRF
                     LHKLRDEEKFDGMEELKRQIAADMEAAKCW"
     gene            13134..15923
                     /gene="ileS"
                     /locus_tag="ACFM6C_000739"
     CDS             13134..15923
                     /gene="ileS"
                     /locus_tag="ACFM6C_000739"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HFC6158227.1"
                     /translation="MTDYSKTVNLLESPFPMRGNLAKREPAWLKSWYEQKRYQKLREI
                     AKGRPKFILHDGPPYANGDIHIGHAVNKILKDIIIRSKTQAGFDAPYVPGWDCHGLPI
                     EVMVEKLHGKDMPKARFRELCREYAAEQIARQKKDFIRLGVLGDWDHPYLTMDFKTEA
                     DTVRMLGEIYKSGYLYRGAKPVQFCLDCGSSLAEAEVEYKDKISPAIDVAYPFKDTAA
                     LAAAFGLAGIEGKAFAVIWTTTPWTLPASQAVSAGADVVYQLIDTPKGKLVLAKDLAE
                     DALKRYGFSDGISILAETTGDKLENLHMNHPFLERDIPMLNGEHVTTDAGTGLVHTAP
                     AHGLEDYAVCNKYGIELYNPVNAEGKYIGETPRVAGMRVWEANPVILQWLEETGNLLA
                     SSKIEHSYAHCWRHKTPLIYRATGQWFVGMDKAGADGKTLRDKAIKAVDDTEFFPSWG
                     RARLEAMIEGRPDWVVSRQRYWGTPMTFFVHKETGELHPNSAELLEKVALKIEEKGIE
                     AWFSLDKSELLSAEDCEHYDKLPDTMDVWFDSGSTHYSVVKQREELDWPADLYLEGSD
                     QHRGWFQSSMLTGCASSMGRAPYKQLLTHGFVVDQNGRKMSKSIGNVVAPQEVYNEFG
                     ADILRLWAASTDYSGELAISKEILKRVTESYRRIRNTLSFLFANLSDFNPIEDAVQQA
                     DMVEIDRYSVVLARQLQERLAGDYYPRYAFHFAVKDIVSFCSEDLGAFYLDILKDRLY
                     TTKADSHARRSAQTALYHITRSLVLLIAPILCFTGEEAWDIIGGGEEDSVLFHTWHEF
                     PTINEKTEAELVKKWTAIREAREAVTAAIEPLRADKTVGSSLQAEAEITAPEEMAGYL
                     NALGEELRFAMLVSKAEVKVGSELAVAAKASDGEKCERCWHYTRDVGAVAGYETVCKR
                     CAENVGGEGETRHYA"
BASE COUNT         3729 a         4365 c         4400 g         3673 t
ORIGIN      
        1 aaatcgtcag aaatacccga accgtcattc ccgcgcaggc gggaatccag acctgtcggt
       61 gcagaaactt atcgggtata acggtttctt gagattttac gttctagatt cccactttcg
      121 tgggaatgac ggcatcggtc tgcctttaca acacggtttc ttagattcca cgttctagat
      181 tcccgcctgc gcgggaatga cggcatatcg gcaggcgcgg ggcttgggac ggcattgctg
      241 ttgcggtttc ggacgcggct ttattcgacg acaattttag ggaaccggct gctgaagtct
      301 ttgcctttgt cggcaatgct cagggcgatt tggaatgcgg catcggtgta gattttggcg
      361 atggcggggt gttcgtcgaa cagttgcgcc ggtgtgccgc cgtccattgc ttcgcgcacg
      421 ggcaggctta ggggaagctg tccgagcagg gggacgttga ggcgggccgc caaatctttg
      481 ccgccgtccg tgccgaacag tgcttcgctg tgtccgcagt tggtgcagat gtggacggac
      541 atattttcca atacgcccaa aatgggaatg ttgactttgc ggaacatatc cacggctttg
      601 cgcgcgtcta tcagggcgat gtcctgcggc gtggttacga tgaccgatcc ggttacgggg
      661 atgcgctggg acagcgtgag ctggatgtcg cccgtacccg ggggcaggtc gatgaaaaga
      721 tagtccactt cgtcccactc gctttggaac atcagctgct gcaaggcttg gctgaccatc
      781 ggcccgcgcc agacgacggc ttggccggta tcgacgagaa agccgataga catgacctgt
      841 atgccgtctg aagattcgac gggaatgagt ttttggtttt tctgatcggg tttgcggtcg
      901 tccacaccca acatggtcgg ttggctcggg ccgtaaaggt cggcatcgag tacgccgacg
      961 cgcgcgccca tgcgcgccat tgcggcggca aggttggctg tcgtcgttga tttgcccacg
     1021 ccgcctttgc cagaggcgac ggcgatgatg tttttcacgc ctttgatggt ggtaacgcca
     1081 ggttggactt tgtgtgtgcc gatttcagtg tccatggaca gatggatgtg tgtgtcgcct
     1141 gtttcgggca tcaggatttc ctgtatgcgg tcggctgttt ctgaggcaat gtgcgcgacg
     1201 gggaagccga aatgcagggc gatatggatg ccgtctgaac gctgttcgac cgaacggacg
     1261 gccttttcgc cgccgagcgt gcgtgccgta ttcggaacgg cgacggtgtc gaggagggtg
     1321 cggatgtttt gtatgttcat aatgtgtgtt tctgtgtgca gtttgggaaa cgggcggaaa
     1381 gtgtacattg atttcgggcg gtttgccttt ccttgtgcga acttttacac ggtatgcggc
     1441 ggattgtgaa aatccgttgt caaaatatcc cgtgcaaaca gtggtctgca attaagcctg
     1501 taaaatttgc ttgacgaggt aggatggtgc tgtataatgc acggcttatc gggtcgttag
     1561 ctcagccggt agagcagcgg acttttaatc cgttggtcga gcgttcgaat cgctcacgac
     1621 ccaccagata accggaagcc aagttttgag acttggcttt ttgtttgcct gccggttgcg
     1681 cgggcgtacc gtttgagaga gcgtatgaaa aagaaactgc tttcgggcat caaatttgcc
     1741 gttcagacgg cattggtgtt tttattggtg tcgctgtttt tggattggat acgcaagccc
     1801 gaagagccgg ccggtgcggc agggcggcct ttgaccctgc tgtcggggca gcggctgact
     1861 ttgggacagt ttagccgaga taaggcggtt ttggtgtatt tttggggaag ctggtgcggc
     1921 gtgtgccgtt atcagtcgcc gataatcgat gatttggcgg cggacggcgt tccggtcgtc
     1981 ggcgtggcgg tacgttccgg cagcgcgtcc gaagtggcgg cgtatatggc aaagcggggc
     2041 ttgggctttc cgacggtcaa cgatgaggac gggggtttgg caaggtcttg gcggattgtc
     2101 gcaacgcctg ccgtcgtttt ggtcaaaaat gggaaaatgg ttcactatac gacgggaatc
     2161 agcagttatt ggggcttgcg cgcacgaatt tttcaggcgg atgttttcgg ttaacttttg
     2221 tttttgttaa actttacgct atgtagagaa tcaaacggca tataccttgc tcgtctgatg
     2281 cggcggcttt tgttttttct ggaagaaagt tctttcgaca gtaaatgtaa tactttgttg
     2341 agattgtagg gaaaatagac taagatataa ctattaaaat atttttagat aggattatcg
     2401 gaattaaagt cttttatacc cagtcgtccg atgcggttta tagcgtattg ttgctatatg
     2461 ttcgttttgt tatataacgg ttgcatcaaa aattacgccc acaggctttc ccgacggttt
     2521 gaaagtttga ttttcgataa cttggagact tgaacaatgc ctacccaatc aaaacatgcg
     2581 tctatcaata tcagtctgat acaggcaagg gaagccctga tgacccaatt caggcctatt
     2641 ctgaatcagg cgaatattac cgatcagcaa tggcggatta tccgtctttt ggcggaaaac
     2701 ggcacgctgg actttcaaga tttggcgaat caggcgtgta ttctgcgccc cagcctgacc
     2761 ggtatcctga cccgccttga aaaagcgggt ttggttgtcc gcctgaaacc ttccaacgac
     2821 caacgacgtg tttttctgaa gctgactgcc gagggcgaga agctgtatga ggaaatcggc
     2881 gaagaagtgg acgagcgtta cgacgctatc gaggaagtgc tgggccgcga gaaaatgctg
     2941 ctgcttaaag acctgttggc agaacttgcc aaaatcgagg atgcgttgaa ctcgtaatac
     3001 gccgtaacgc gcggaaacgt ccgaccgacg gctttttgaa tcagaactgc tgcacatggg
     3061 gggtgccttg tgtgcagcat tcttatatag gggacagttt aaaggggaaa aatggcggat
     3121 ttgcagaaaa cttttcaaac ttcgttccgt gatgcgatgg catcttgcgc ggcaggcgtt
     3181 catgtcatca cgacagacgg tgcggcaggg cgttacggca ttacaatgac ggcggttgcg
     3241 ccggtaacgg acgagccgcc gaccgtgatg ctgtgcatca accgtaaagc ccgtatcatc
     3301 ccgatactgt cggaaaacgg cagcctgtgc atcaatacgc tggcggacga acatcaggat
     3361 gttgccgaac attttgccgg gctgaccggc ctgtcgcccg aagagcggtt tgcctaccac
     3421 atctggcatc gcggcaaaac gggacaactt gaaatagaag gagcgttggc gcacctgcac
     3481 gggcatattg tcggcaaaca tgaaatcggc acgcattttg tgttttacgt caggctcgac
     3541 gaaattaaaa actgcgggtg caaacgtccc gcgctgctgt atttcagacg gcagtttaga
     3601 tttttagact gatattcgga cagatatatg aaagcgatga tactggcggc aggacgcggc
     3661 gagcgtatgc gccctttgac cgataccact ccgaagccgc tgcttgatgt ggcgggtaag
     3721 cctctaatcg gttggcacct atgccgtctg aagcaggcgg ggtttaccga aatcgtcatc
     3781 aaccacgctt ggctgggtcg gcagatagaa gatgctttgg gcgacggctc ggcttatggc
     3841 gtgaacatcg cctattcgcc cgaacccgca ggcggtttgg aaacggcagg cggcatcgcg
     3901 caggcattgc cgctgttggg tgggcagccg tttttggtgg tcaacggcga cgtgctgacc
     3961 gacatcgatt ttaccgccgc gtttcagacg gcatcgtccc tgccggaaca tatttccgcc
     4021 catctgtggc tggtggaaaa tccgccgcac aaccccgacg gcgatttttc cctgctgccc
     4081 gacggcagcg tgcggccgga agtaaatggc ggcaacggat tgacatttag cggcgtgggt
     4141 atttaccgtc ctgaaatgtt tgatggaatc gaagcgggca gtgtggcgaa actcgcgccc
     4201 gtattgcggg gcgaaatgcg gcaaaaccgc gtcagcggac agaagcatac gggcttgtgg
     4261 ctggatgtcg gcacggtatg ccgtctgaaa gaggctcaag cccttgcagg ggcttggaag
     4321 tgaaataaaa cggtggcttg ccgagccggc tgccgaacgg ttccgaccgg atgtccggca
     4381 tattttcgtg gaggcgtgaa aatagggcgt tcggggcttt ccgtccaaca aatgccatct
     4441 gaagccgacc ctgtcggatg cggcggtttg ccgtcggcgc ggtgtcggat tttattgggt
     4501 aactttgttc agaccgccgc ccgtcagatt gtcaaaaccc ggtttcaggc ggtatggcgg
     4561 attcggttta acgtttcaac gccagcacca acacgcccgc cgttaccagc cccaagccta
     4621 tccattcctg cgtgttcggg cgttcgtcca agaaaaccac cgccatcagc gcgaccagaa
     4681 ccaggctgaa tttatcaacg ggggcgactt gcgaggcgtt acccagttgc agggctttaa
     4741 aataggcgag ccaggatgcg ccggtggcga gtccggataa aatcagaaac gtccagttgc
     4801 ggccggtaaa gccgtttacg ccctgccatt tgccggtgta ggttaaaaac aataccaaag
     4861 cggcgaggat gaccaaggtg cggatgaaag tggcaaaatc ggaatctatt ccttgtaaac
     4921 ccattttggc gaaaacggcg gtcaatgagg cgaagcctgc caatgcccaa aacagccatg
     4981 cgttgctgcc catgttttct ccttggattg tgaacaatat gaacggtatt tttgttgcag
     5041 cgtcaaaaat ttcactgcgg gtttggtgcg gataacgtta taatatgcct gatattattt
     5101 tcaatccacc tgtttgtcgc ctgatgcttt cagacggcat gtccctcctc atttctaaag
     5161 gaaaatcatg agcttcaaaa ccgatgccga aatcgcccaa tcctccacca tgcgcccgat
     5221 tggcgaaatt gccgccaagc tgggtttgaa cgttgacaac attgagcctt acggtcatta
     5281 caaggcgaaa atcaatcctg ccgaagcgtt caaactgccg caaaaacagg gcaggctgat
     5341 tttggttacc gccatcaacc cgactccggc gggcgaaggc aaaaccaccg taaccatcgg
     5401 tttggcggac gcgttgcgcc acatcggcaa agatgccgtg attgccctgc gcgaaccttc
     5461 tctggggccg gtgttcggcg tgaaaggcgg cgcggcaggc ggcggctatg cccaagtttt
     5521 gccgatggaa gacatcaacc tgcacttcac cggagatttt cacgccatcg gtgcggcaaa
     5581 taatctgctt gccgcgatgc tcgacaacca tatctatcag ggcaacgagt tggacatcga
     5641 ccccaaacgc gtgctgtggc ggcgcgtggt cgatatgaac gaccgccagt tgcgcaacat
     5701 catcgacggc atgggtaaac ccgttgacgg tgtgatgcgc cccgacggtt ttgatatcac
     5761 cgttgcctcc gaagtgatgg cggtattctg ccttgccaaa gacatcagcg atttgaaaga
     5821 gcgtttgggc aacatccttg ttgcctacgc caaagacggc agccccgttt acgccaaaga
     5881 tttgaaagca cacggcgcga tggcggcatt gcttaaagat gcgattaagc ccaacttggt
     5941 gcaaaccatc gaaggcacac ctgccttcgt acacggcggc ccgttcgcca acatcgccca
     6001 cggctgtaac tctgtaacgg ctacccgact ggcgaaacac cttgccgatt acgccgtaac
     6061 cgaagcaggc ttcggcgcgg atttgggcgc ggaaaaattc tgtgacatca aatgccgtct
     6121 ggcggatttg aaacctgatg cggctgttgt cgtcgctacc gtccgcgctt tgaaatataa
     6181 cggcggcgtg gaacgtgcca acctaggcga agaaaacctc gaagccctgg caaaaggttt
     6241 gcccaacctg ctgaaacaca tttccaacct gaaaaacgta ttcggactgc ccgtcgtcgt
     6301 tgcgctcaac cgcttcgtgt ccgactccga tgccgagttg gcgatgattg aaaaagcctg
     6361 tgccgaacac ggcgttgaag tttccctgac cgaagtgtgg ggcaaaggcg gcgtgggcgg
     6421 tgcagacttg gcgcgcaaag tcgtcaacgc catcgaaaac caaccgaaca acttcaattt
     6481 ttcctacgat gttgagctga gtattaaaga caaaatccgt gcgattgccc aaaaagtgta
     6541 cggcgcggaa gatgttgatt tcagcgcgga agcgtctgcc gaaatcgcct cgctggaaaa
     6601 actgggtttg gacaaaatgc cggtctgtat ggcgaaaacc caatattctt tgagcgacaa
     6661 cgccaaactg ttgggctgcc ccgaaggctt ccgcatcgcc gtgcgcggca tcaccgtttc
     6721 cgcaggcgca ggtttcatcg tcgccctgtg cggcaacatg atgaaaatgc ccggcctgcc
     6781 caaagttccg gctgccgaga aaatcgatgt ggacgcagaa ggcgtgattc acggcttgtt
     6841 ctgaacggtt ttctgaaacc ggatgccgtc tgaagccgtt tcagacggca ttttttcgga
     6901 acgcgggcgg cggtatgcta taatccgccg ttaaatttct ctattttcag gaaaaaacat
     6961 gagtttgaaa tgcggcatcg tcggtttgcc caacgtcggc aaatccaccc tttttaacgc
     7021 gctgacccaa tcgggtatcg aagcggcaaa ctatcctttc tgtaccatcg aacccaacgt
     7081 cggcatcgtc gaagtccccg atccgcgtat ggccgaattg gcaaaaatcg tcaatccgca
     7141 aaaaatgcag cctgccatcg tcgaatttgt cgatattgcc ggtttggttg caggcgcgag
     7201 caaaggcgag ggcttgggca accagttcct tgccaacatc cgcgaaaccg atgcgattgt
     7261 gaatgtcgtg cgctgctttg acgacgacaa catcgtccac gttgcaggcc gcgtcgatcc
     7321 gattgccgac attgaaacca tcggtacaga gttggccctt gccgacttgg caagtgtgga
     7381 aaaagccatc gtccgcgaag aaaaacgcgc ccgttccggc gacaaagacg cgcaaaaact
     7441 ggtcgaactg tgtaaaaaac tgctgccgca tctggacgaa ggcaaacccg tgcgttcctt
     7501 cggtttggac gcggaagaac gcgcgatgct caaaccactg ttcctgctga ccgccaaacc
     7561 ggcgatgtat gtgggcaacg tcgccgaaga cggttttgaa aacaatccgc acctcgaacg
     7621 cctgaaagaa ttggcggcaa aagaaaacgc ccccgtcgtc gccgtttgcg ccgcaatgga
     7681 aagcgaaatt gccgaattgg aagacgacga aaaagccgaa ttcctcgccg aaatgggctt
     7741 ggaagaaccc ggcctgaacc gcctgattcg tgccggttac gacctcttgg ggctgcaaac
     7801 ctatttcacc gccggcgtga aagaagtccg cgcgtggacg atacacaaag gcgacaccgc
     7861 cccgcaagcc gccggcgtga ttcacaccga ctttgaacga ggcttcatcc gcgcccaagt
     7921 catttcttac gacgactttg tctcgctcgg cggcgaagcc aaagccaaag aagccggcaa
     7981 aatgcgtgtg gaaggcaaag aatacgtcgt gcaagacggc gatgtaatgc actttttgtt
     8041 taacgtgtaa cccaaatgcg gcaggttttc agacggcttt gccggaaatg ccgtctgaag
     8101 ccggttttgg tggttttcgg cgtttccata ccgccggaat gcggccgcat caaaataaaa
     8161 tcccgcccgc atttccgatt tgccctcccc gattcctgca aaacaaaccg cctgccccgc
     8221 tgttgcaaaa atccgtccgg cattccgaat atcccgagcc ccgatacaaa atgacctttc
     8281 agatggcatt tgcgccgccg cgatgaaagc aaaaatatta tgagccaagc cttaccctac
     8341 cgcccggaca tcgacacatt gcgcgccgcc gccgtcttgt ccgtcatcgt gttccatatc
     8401 gaaaaaaatt ggctgccggg cggatttctc ggtgtcgata tattctttgt gatttcaggc
     8461 tttttgatga cggcgatcct ccttcgcgaa atgtcggggg gggggaggtt ttccctgaag
     8521 gcattttata tccgccgcat caaacggatt ttgcccgcat ttttcgccgt attggcggca
     8581 acgctgatag gcggcttctt tttattcacc aaagatgatt tctttctttt atggaaatcc
     8641 gcgctgaccg ccttgggttt cgcatccaac ctgtattttg caaggggcaa ggactatttc
     8701 gctcccgcgc aggaagaaaa gcccctgctg cacatttggt ctttgtcggt cgaagaacaa
     8761 ttttactttg tctttccgat attgctgctg cttgtcgccc gcaaaagcct gcgcgtccaa
     8821 gccggcttcc tcgccgcact gtgcgcgtta agccttgcca cttcctttat accttccgcg
     8881 ctcgataaat attacctgcc ccacctgcgc gcctgcgaaa tgctggtcgg atcgctgacc
     8941 gccgtgtgga tgcgctgccg gcaacctgcc gtcggcagac gctgtgccgc cgccggcgca
     9001 ttgtttgccg tgtgcatatt gtcaacctgc ctgttttcct attcggaaca aaccgcctat
     9061 ttcccgggcc ccgccgcttt gattccctgt ctggctgttg ccgcgctgat ttatttcaat
     9121 cattacgaac acccgcttaa aaaatttttc caatggaaaa tcaccgttgc cgccggtttg
     9181 atttcctatt cgctttatct gtggcattgg ccgatattgg cctttatgcg ctatatcggc
     9241 ccggacaacc tgccgcctta ttcgccggcg gcagcaatcg tcctgactct ggcgttttcc
     9301 ctgatttctt atcactgcat cgaaaagccg tttaaaaaat ggaaaggttc gttcgcacaa
     9361 tccgttttat ggatttatgc cttgcctatg ctcattttgg gggcgggctc gttttttgcg
     9421 atgagactgc cgtttatggc gcaatacgac cgcttggggc tgacgcgttc caacacctcc
     9481 tgccacaaca ataccggcaa acaatgcctg tggggggata cggaaaaaca gccggagctg
     9541 ctggttttgg gcgactccca cgccgaccat tacaaaacat tcttcgatgc cgtgggcaaa
     9601 aaagaaaaat ggtccgccac tatggtttcc gccgacgctt gcgcctatgt ggaaggctac
     9661 gtgtcccgcg tgttccaaaa ctgggccgcc tgccgcgccg tttaccgcta tgccgaagaa
     9721 cacctgcccc ggtattcaaa agtggttttg gcgatgcgct ggggcagcca aatgcccgaa
     9781 aacagccgct cccttgccta cgatgccggt tttttccaaa aattcgaccg tatgctgcat
     9841 aaactctcgt ccgaaaaaca agccgtttac ctgatggcgg acaaccttgc ctcgtcttac
     9901 aacgtccagc gcgcctatat cttgtcttca cgcataccgg gttaccgcca agccctgcgc
     9961 ccggacgacg aaagcaccct gaaagccaat gcacgcatca gggaattggc agccaaatac
    10021 cccaacgtct atattattga tgccgccgcc tatatccccg cagattttca aatcggcgga
    10081 ttgccggttt actcggacaa agaccacatc aacccttacg gcggcacgga attggcaaag
    10141 cgtttttccg aaaaacaacg gtttctcaat acgcgccata accattgatt cgcttaaatt
    10201 tgttacaatc ggcggtttgc aaaaacgcta atttttttga aagagaccga tgagcgtcat
    10261 ccaagacctg caatcgcgcg accttatcgc gcaaacgacc gacatcgaag ccttagacgc
    10321 tttgttgaac gaacaaaaaa tcgcccttta ctgcggtttc gatccgaccg ccgacagcct
    10381 gcacatcgga cacctgctgc ccgtattggc attgcgccgc ttccaacagg cggggcatac
    10441 gccgattgct ttggtgggcg gcgcgaccgg tatgatcggc gaccccagct tcaaagccgc
    10501 cgaacgcagc ttgaattccg ccgaaactgt tgccggctgg gtggaaagta tccgcaacca
    10561 attaacccct ttcttgagct ttgaaggcgg aaatgccgcc attatggcga acaatgccga
    10621 ctggttcggc agcatgaact gccttgactt cctgcgcgac atcggcaagc atttctccgt
    10681 caacgccatg ctgaacaaag aatccgtcaa acagcgcatt gaccgcgacg gcgcaggcat
    10741 ttccttcacc gagttcgcct actccctgct gcaaggctac gacttcgccg agttgaacaa
    10801 acgccacggc gcggttttgg aaatcggcgg ctccgaccaa tggggcaaca tcaccgccgg
    10861 tatcgacctg acccgccgcc tgaatcaaaa acaagtgttc ggcctgaccc tgcctttggt
    10921 taccaaatca gacggcacca aattcggcaa aaccgaaggc ggcgcggtgt ggctgaacgc
    10981 gaaaaaaacc tcgccctatc agttctacca attctggctg aaagtcgccg atgccgatgt
    11041 gtataaattc ctgaaatact ttaccttcct gtccatcgaa gaaatcgacg ctatcgaagc
    11101 gaaagataaa gccagcggca gcaagcccga agcgcaacgc atcctcgccg aagaaatgac
    11161 ccgcctgatt cacggcgaag aagcccttgc cgccgcgcag cgcatttccg aaagcctgtt
    11221 tgccgaagac caaagcagcc tgaccgaaag cgacttcgag cagctcgccc tcgacggcct
    11281 gcctgcattt gaagtttcag acggcatcaa tgtcgtcgaa gccttggtca aaaccggttt
    11341 ggcatcctcc aataaagaag cgcgcggctt tgtgaacagc aaagcggttt tgctcaacgg
    11401 caaacctgcc gaagccaaca accccaacca cgccgccgaa cgccccgacg atgcctgcct
    11461 gctgaacggc gaacacaaac gtttcggcaa atacaccatc cttcggcgcg gcaaacgcaa
    11521 ccacgcgctt ttggtttgga aataatccga ttgccgcaga aatgccgtca ttcccgcgca
    11581 ggcgggaatc cggacctgtc cgcacggaaa cttatcgggc aaaacggttt cttagattcc
    11641 acgttctaga ttcccgcctg agcgggaatg acgagtttca agattacggt gttgtcggaa
    11701 cgcaactgaa ccgtcattcc cacgaaagtg ggaatctaga atctcggggt ttgagcaact
    11761 gtttttatcc gataagtttc tgtgcggaca ggtccggatt cccgcctgcg cgggaatgac
    11821 ggcggagggt tgcttgtctc ggtttacctg gttaaaaaag aacgattttc actgatgttg
    11881 catcaggttt ggggcgatgt ttcaacacat aggatcgcgc ctgatgcacg ctttatgcgt
    11941 ttggcgcgtt cggcggcggg aaatttgcct gcttttccag cgtcgggcgg gcgtaacggg
    12001 cggcacactg tctataaacc gcaataccgt ttacaatgac cgcctgtttc accacatacc
    12061 cgaacgcaac aatgaaaatc aggctggggc ggcacaacgc gcccgacttt ccacagggtg
    12121 ccgccgtaac cataggcaat ttcgacggcg tacacctcgg acacaaacac atcctccaaa
    12181 aactccgcct cgaagccgac gcgcgcggac tgcccgtcgt tgccgtcatc ttcgaacctc
    12241 aacccaaaga attttttgcc gccctcgcag gcaaaacccc accctgccgc atcagccccc
    12301 tgcgcaccaa gctcgaatta ttggaaggca caggctgtgt cgatgccgtc tgggttttgg
    12361 gtttcgatca aaatttttcc gaaatatccg cgcaagggtt tatcgaccgc ctgctgcgtc
    12421 aaaccttgaa tacgcgttat ttgctcgtcg gcgacgattt ccgtttcggt gcggggcggg
    12481 aaggctgttt tgaacttttg gcacaacagc ccgatatgca gaccgaacgc acgccttccg
    12541 tcatcgtcga agacatccgc accagcagta ccgccgtccg ccaagccctt tcagacggca
    12601 acctcgctta tgcgaaaaaa cttttgggac acgactacgt tttggggggc agggtggtgc
    12661 acggcagaaa actcggacgc accctaaacg ccccgactgc caacatccgc ctgcccgacc
    12721 accgttatgc cctcggcggc gtgttcgtcg tcgatgcgga cggcgcattc ggcacgcggc
    12781 gcggcgtggc gagcttcggc ttcaatccca ccgttgatag cggctgttct caaaagcttg
    12841 aagtccacct gttcgacttt caaggcgacc tgtacggaca acggctgaac gtccgcttcc
    12901 tgcacaaact gcgcgatgag gaaaagtttg acggtatgga agaactgaaa aggcagatag
    12961 cagccgatat ggaagccgca aagtgttggt agaaaaacct tatacaaacc atccgattgg
    13021 gctacaatta atcttttaac ttttcagacg gcataggggt ttcccgttgt gaaatactgt
    13081 ttgaggcgca atgccgtctg aaaccgaaat attgtaacaa tagagattaa aaaatgaccg
    13141 attacagtaa aaccgtaaac ctgctcgaga gcccgtttcc gatgcgcggc aaccttgcca
    13201 agcgcgagcc tgcatggctg aaaagctggt acgagcaaaa acgctaccaa aaactgcgcg
    13261 aaatcgccaa aggtcgtccg aagttcatcc tgcacgacgg cccgccgtat gccaacggcg
    13321 acatccacat cggtcatgcc gtcaataaaa ttctcaaaga catcattatc cgcagcaaaa
    13381 cccaagccgg ttttgacgcg ccttatgtac cgggctggga ctgccacggc ctgcctatcg
    13441 aagtgatggt ggaaaaactg cacggcaaag acatgcctaa agcccgtttc cgcgaattgt
    13501 gccgcgaata cgccgccgaa cagattgccc gtcagaaaaa agactttatc cgcttgggcg
    13561 tgttgggtga ctgggaccat ccttacctga ccatggattt caaaaccgaa gccgataccg
    13621 tgcgtatgct cggcgaaatc tacaaatccg gctatctcta ccggggtgcg aaaccggttc
    13681 aattctgctt ggattgcggc tcttcattgg ccgaagcgga agtggaatat aaagacaaaa
    13741 tctcgcccgc gattgacgtt gcctatccgt ttaaagacac cgccgcgctt gccgccgcat
    13801 tcggtttggc aggtatcgaa ggcaaagcgt ttgccgttat ttggacaacc acgccttgga
    13861 ctttgcctgc gagccaagct gtttcagcgg gtgcagacgt ggtgtatcaa ttaatcgata
    13921 cgcccaaagg caaattggta ttggccaaag atttggcgga agacgctttg aaacgctacg
    13981 gcttttcaga cggcatttct attcttgccg aaaccaccgg cgacaagctg gaaaacctgc
    14041 acatgaacca tccgttcctc gaacgcgata ttcccatgct taacggcgaa cacgttacca
    14101 ccgatgccgg taccggcttg gtgcacaccg cccccgcgca cggtttggaa gactacgccg
    14161 tctgcaacaa atacggcatc gagctttaca atcctgtcaa cgccgaaggc aaatacatcg
    14221 gcgaaacgcc gcgcgttgcc ggtatgcgcg tttgggaggc gaaccccgtc atcctgcaat
    14281 ggttggaaga aaccggcaac cttttggcaa gcagtaaaat cgaacacagc tacgcccact
    14341 gctggcggca caaaacgccg ctgatttacc gcgcgaccgg tcaatggttt gtcggtatgg
    14401 acaaagccgg tgccgacggc aaaaccctgc gcgacaaagc catcaaggcc gtggacgaca
    14461 ccgaattctt cccgtcttgg ggtcgcgcgc gtttggaagc catgattgaa ggtcgtcctg
    14521 actgggtggt ttcacgccaa cgctattggg gcacgccgat gactttcttt gttcacaaag
    14581 aaacgggcga gctgcatccg aactctgccg aacttttgga aaaagttgcc ctgaaaatcg
    14641 aagaaaaagg catcgaggct tggttctccc tcgataaaag cgaattatta agcgcggaag
    14701 attgcgaaca ttacgacaaa ctccccgaca cgatggacgt atggttcgac tccggttcga
    14761 cccattattc cgttgtgaaa cagcgcgaag aattggactg gcctgctgac ttgtacctcg
    14821 aaggcagcga tcaacaccgg ggctggtttc agtcgtccat gctgaccggc tgcgcctcat
    14881 caatgggtcg cgcgccgtac aaacagctgc tgacccatgg tttcgtggtg gatcaaaacg
    14941 ggcgcaaaat gtcgaaatcc atcggcaacg tcgtcgcgcc gcaagaagtg tataacgagt
    15001 tcggcgcgga catcctgcgc ctgtgggcgg catccaccga ttacagcggc gaattggcga
    15061 tttccaaaga aatcctcaag cgcgtaaccg aaagctaccg ccgtatccgc aataccttga
    15121 gctttttgtt tgccaacttg agcgacttca atcctattga agatgccgtg caacaggcgg
    15181 atatggtgga aatcgaccgc tactccgtgg tattggcacg tcagctgcaa gagcgtctgg
    15241 caggcgatta ctatccgcgt tatgccttcc actttgccgt aaaagacatt gtttctttct
    15301 gctcggaaga cttgggtgcg ttctacctcg acatcctgaa agaccgcctc tacaccacca
    15361 aagccgacag ccatgcacgc cgcagcgcac aaactgccct gtatcacatc acacgcagtt
    15421 tggttctctt gattgcaccg attttgtgct tcaccggcga agaagcgtgg gacatcatcg
    15481 gcggcggcga agaagacagc gtcctcttcc atacttggca cgagttcccg accatcaacg
    15541 aaaaaaccga agccgaactg gtgaaaaaat ggacggcaat ccgcgaagcc cgcgaagcgg
    15601 taaccgccgc catcgagcct ttgcgcgccg acaaaaccgt cggttcgtcc ttgcaagccg
    15661 aagccgaaat caccgcgccg gaagaaatgg ccggctacct gaacgccttg ggcgaagaat
    15721 tgcgctttgc catgctggtg tctaaagcag aagtgaaagt aggcagcgaa cttgccgttg
    15781 ccgctaaagc cagtgatggt gaaaaatgcg aacgctgctg gcactacacc cgcgatgtgg
    15841 gcgcggttgc aggctatgaa accgtctgca aacgctgtgc agagaatgtc ggcggagaag
    15901 gcgaaacgcg ccattacgcc tgataaagtt tgagcaaatg ccgtctgaaa ccgccgaaca
    15961 gcatttcaga cggcattttt tgtgccgcga tttgtcttta taacggcgga ggggtttcaa
    16021 gattgcggtg ttgtcggaat gcaactgaac cgtcattccc acgaaagtgg gaatctagaa
    16081 tctcgaagtt tcagtcattt ccgatagatt cccgccgcgt cgtgggtctg gattcccgcc
    16141 tgtgcgggaa tgacggattt cgagatt
//
LOCUS       DAXHPV010000032        16147 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.032, whole genome shotgun sequence.
ACCESSION   DAXHPV010000032 DAXHPV010000000
VERSION     DAXHPV010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16147)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16147)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16147
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.032"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..77)
                     /locus_tag="ACFM6C_000740"
     CDS             complement(<1..77)
                     /locus_tag="ACFM6C_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-fructose-6-phosphate
                     aminotransferase"
                     /protein_id="HFC6158228.1"
                     /translation="MKPVVWAALLLCACTSNFGDREHQFL"
     gene            280..1608
                     /gene="miaB"
                     /locus_tag="ACFM6C_000741"
     CDS             280..1608
                     /gene="miaB"
                     /locus_tag="ACFM6C_000741"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HFC6158229.1"
                     /translation="MKKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADII
                     LFNTCSVREKAQEKVFSDLGRVRPLKEKNPGLIIGVAGCVASQEGENIVKRAPYVDVV
                     FGPQTLHRLPKMIVDKETSGLSQVDISFPEIEKFDHLPPARVEGGAAFVSIMEGCSKY
                     CSFCVVPYTRGEEFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYCGEMDDGEICDF
                     ATLLRIVHEIPGIERMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSA
                     MKRGYTALEYKSIIRKLRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSF
                     VFIYSPRPGTPAANLHDDTPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGI
                     SKKDPDQLQARTANNRVVNFTGTPNMINQMIDLEITEAYTFSLRGKVVEA"
     gene            complement(1693..3606)
                     /gene="dxs"
                     /locus_tag="ACFM6C_000742"
     CDS             complement(1693..3606)
                     /gene="dxs"
                     /locus_tag="ACFM6C_000742"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HFC6158230.1"
                     /translation="MNPSPLLDLIDSPQDLRRLDKKQLPRLAGELRAFLLESVGQTGG
                     HFASNLGAVELTIALHYVYNTPEDKLVWDVGHQSYPHKILTGRKNQMHTMRQYGGLAG
                     FPKRSESEYDAFGVGHSSTSIGAALGMAAADKLLGSDRRSVAIIGDGAMTAGQAFEAL
                     NCAGDMDVDLLVVLNDNEMSISPNVGALPKYLASNVVRDMHGLLSTVKAQTGKVLDKI
                     PGAMEFAQKVEHKIKTLAEEAEHAKQSLSLFENFGFRYTGPVDGHNVENLVDVLKDLR
                     SRKGPQLLHVITKKGNGYKLAENDPVKYHAVAKLPKEGAAQMPSEKEPKPVAKPTYTQ
                     VFGKWLCDRAAADERLIAITPAMREGSGLVEFEQRFPDRYFDVGIAEQHAVTFAGGLA
                     CEGMKPVVAIYSTFLQRAYDQLVHDIALQNLPVLFAVDRAGIVGADGPTHAGLYDLSF
                     LRCVPNMIVAAPSDENECRLLLSTCYQADAPAAVRYPRGTGTGAPVSDGMETVEIGKG
                     IIRREGEKTAFIAFGSMVAPALAVAEKLNATVADMRFVKPIDEELIVRLARSHDRIVT
                     LEENAEQGGAGGAVLEVLAKHGICKPVLLLGVADTVTGHGDPKKLLDDLGLSAEAVER
                     RVRAWLSDRDAAN"
     gene            complement(3691..4608)
                     /gene="xerC"
                     /locus_tag="ACFM6C_000743"
     CDS             complement(3691..4608)
                     /gene="xerC"
                     /locus_tag="ACFM6C_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HFC6158231.1"
                     /translation="MVLDGFAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQM
                     PSEAEGGVPQDLSRRDFTAALRRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDP
                     TADIKPPKQPERVPKALPQEWLNRMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIH
                     GLNADDVYLDEAWVHVTGKGRKQRQVPLTGKSVEALKNYLPLRQTASDGKALFTGRNG
                     TRLSQRQIQKRLAQWAAQNGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLS
                     TTQIYTKLDFDHIARLYDEAHPRAKRQDE"
     gene            4802..5866
                     /gene="fba"
                     /locus_tag="ACFM6C_000744"
     CDS             4802..5866
                     /gene="fba"
                     /locus_tag="ACFM6C_000744"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219833.1"
                     /note="catalyzes the reversible aldol condensation of
                     dihydroxyacetonephosphate and glyceraldehyde 3-phosphate
                     in the Calvin cycle, glycolysis, and/or gluconeogenesis;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HFC6158232.1"
                     /translation="MALVSMRQLLDHAAENSYGLPAFNVNNLEQMRAIMEAADQVNAP
                     VIVQASAGARKYAGAPFLRHLILAAVEEFPHIPVVMHQDHGASPDVCQRSIQLGFSSV
                     MMDGSLMEDGKTPSSYEYNVNATRTVVNFSHACGVSVEGEIGVLGNLETGEAGEEDGV
                     GAVGKLSHDQMLTSVEDAVRFVKDTGVDALAIAVGTSHGAYKFTRPPTGDVLRIDRIK
                     EIHQALPNTHIVMHGSSSVPQEWLKVINEYGGNIGETYGVPVEEIVEGIKHGVRKVNI
                     DTDLRLASTGAVRRYLAENPSDFDPRKYLSKTIEAMKQICLDRYLAFGCEGQAGKIKP
                     VSLEKMANRYAKGELNQIVK"
     gene            6024..6869
                     /locus_tag="ACFM6C_000745"
     CDS             6024..6869
                     /locus_tag="ACFM6C_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="factor H-binding protein"
                     /protein_id="HFC6158233.1"
                     /translation="MNRTAFCCLFLTTALILTACSSGGGGSGSGGVAADIGTGLADAL
                     TTPLDHKDKGLKSLTLEDSIPQNGTLTLSAQGAEKTFKAGDKDNSLNTGKLKNDKISR
                     FDFVQKIEVDGQTITLASGEFQIYKQDHSAVVALQIEKINNPDKIDSLINQRSFLVSG
                     LGGEHTAFNQLPGGKAEYHGKAFSSDDAGGKLTYTIDFAAKQGHGKIEHLKTPEQNVE
                     LAAAELKADEKSHAVILGDTRYGSEEKGTYHLALFGDRAQEIAGSATVKIGEKVHEIG
                     IAGKQ"
     gene            6962..7639
                     /gene="tsaB"
                     /locus_tag="ACFM6C_000746"
     CDS             6962..7639
                     /gene="tsaB"
                     /locus_tag="ACFM6C_000746"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HFC6158234.1"
                     /translation="MQADFNRPVLAVDTGTSYLSLALRADGETRLFHQEVGSRQSELI
                     LPEIRTLFRDAGITAADLGAVVYAQGPGAFTGLRIGIGVAQGLATPFNTPLIGIPTLA
                     AAASLPPPQSCILAATDARMGEVFYAWFDTLNRRRLSDYQVGRAADITLPEGYVFSDG
                     IGSAFTLENCPPFAGKPDMPTAADFLNLAADGGFPAVAAAHAELLYVRNKIALTAKEQ
                     AERRARP"
     gene            7636..8076
                     /gene="rimI"
                     /locus_tag="ACFM6C_000747"
     CDS             7636..8076
                     /gene="rimI"
                     /locus_tag="ACFM6C_000747"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008999 -
                     peptide-alanine-alpha-N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HFC6158235.1"
                     /translation="MNIRRAVYADCEELAALDAVCNPSAWTQRQFESALVSPSEQVFL
                     AEKDGGIAAFIVWQNLPDESELHLIATALEYRRRGVASALLEYWFAHLPEGTKRLLLE
                     VRAGNIGAQALYAAHGFTDAGRRKNYYRTADGKTEDAVLMEKIC"
     gene            8070..8801
                     /locus_tag="ACFM6C_000748"
     CDS             8070..8801
                     /locus_tag="ACFM6C_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010791194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HFC6158236.1"
                     /translation="MLSARYLHLHEALGLGPMWLKRGAVVLPPATLPGSLRPQKQTVL
                     SIPQRPSEQHTGQARLKTMKVLETAAVHTRKPVPETETPLPGVSDGIAPVPAASGITK
                     LAVVSLCPPTEDMVYGQLFHGKAGVLIDNILKAVGLDAAYVHKTSWVKTAAVGNPMPS
                     EQAIANALGQIARELDGCRAPAVLFLGQAFVQPERQTMIETLCGSRPFFIIDHPARLL
                     RQPELKARNWQVLKQLKRALQAGGS"
     gene            8863..9504
                     /gene="pyrE"
                     /locus_tag="ACFM6C_000749"
     CDS             8863..9504
                     /gene="pyrE"
                     /locus_tag="ACFM6C_000749"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HFC6158237.1"
                     /translation="MTDFRQDFLKFSLAQNVLKFGEFTTKAGRQSPYFFNAGLFNDGA
                     STLQLAKFYAQSIIESGIQFDMLFGPAYKGIILAAATAMMLVEKGVNVPFAYNRKEAK
                     DHGEGGVLVGAPLKGRVLIIDDVISAGTSVRESIKLIEAEGATPAGVAIALDRMEKGT
                     GELSAVQEVEKQYGLPVAPIASLNDLFILLQNNPEFGQFLEPVRAYRRQYGVE"
     gene            9578..10012
                     /locus_tag="ACFM6C_000750"
     CDS             9578..10012
                     /locus_tag="ACFM6C_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MJ0042-type zinc finger domain-containing
                     protein"
                     /protein_id="HFC6158238.1"
                     /translation="MPACFCPHCKTRLWVKETQLNVAQGFVVCQKCEGMFKAKDHLAS
                     TKEPIFNDLPEAVSDVKLVHRIGTHAIGKKQISRDEIADILNGGTTLHDTPPAPAAAP
                     AAAPQVAVPPAAPARQDGFNWTIATLFALIVLIMQLSYLVIL"
     gene            10009..11319
                     /gene="argA"
                     /locus_tag="ACFM6C_000751"
     CDS             10009..11319
                     /gene="argA"
                     /locus_tag="ACFM6C_000751"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004042 - acetyl-CoA:L-glutamate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HFC6158239.1"
                     /translation="MIVPDLFVAHFREAAPYIRQMRGKTLVAGIDDRLLEGDTLNKLA
                     ADIGLLSQLGIRLVLIHGARHFLDRHAAAQGRTPHYCRGLRVTDETSLEQAQQFAGTV
                     RSRFEAALCGSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRF
                     QLDAGNIVWLPPLGHSYGGKTLHLDMLQTAASAAVSLQAEKLVYLTLSDGIARPDGTL
                     AETLSAQEAQSLAEHAGGETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNG
                     IGTSIAKEAFVSIRQAHSGDIPHIAALIRPLEEQGILLHRSREYLENHISEFSILEHD
                     GNLYGCAALKTFAEADCGEIACLAVSPQAQDGGYGERLLAHIIDKARGIGISRLFALS
                     TNTGEWFAERGFQTASEAELPEARRKAYRNNGRNSHILVRRLHR"
     gene            11415..13430
                     /locus_tag="ACFM6C_000752"
     CDS             11415..13430
                     /locus_tag="ACFM6C_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family protein"
                     /protein_id="HFC6158240.1"
                     /translation="MKSYPDPYRHFENLDSAETQNFAAEANAETRARFLNNDKARALS
                     DGILNQMQDTRQIPFCQEHRARMYHFHQDAEYPKGVYRVCTAATYRSGYPEWKILFSV
                     ADFDELLGDDVYLGGVSHLVEKPNRALLTLSKSGGDTAYTLEVDLEAGELVEGGFHFP
                     AGKNHVSWRDENSVWVCPAWDERQLTESGYPREVWLVERGKSFEESLPVYQIDKGAMM
                     VNAWRYLDPQGSPIDLIEASDGFYTKTYLQVSSEGEAKPLNLPNDCDVAGYLAGHLLL
                     TLRKDWHRANQSYPSGALVAVKLNRGEIGAAQLLFAPDETQALESVETTKRFVVASLL
                     ENVQGRLKAWRFADGKWQEVELPRLPSGALEMTDQPWGGDVVYLAAGDFTTPLTLFAL
                     DLNVMELTVMRRQPQQFDSDGIEVRQFWTTSADGERIPYFHVGKNAAPDTPTLVYAYG
                     GFGIPELPHYLGSIGKYWLEEGNAFVLANIRGGGEFGPRWHQAAQGISKHKSVDDLLA
                     VVRDLSERGMSLPEHIGLQGGSNGGLITAAAFVREPQSIGALVCEVPLTDMIRYPLLS
                     AGASWTDEYGNPQKYEVCKRQLGELSPYHNLSDGIDYPPALITTSLSDDRVHPAHALK
                     FYAKLRETSPQSWLYSPDGGGHTGNGTQRESADELACVLLFLKEFLG"
     gene            complement(13544..14500)
                     /locus_tag="ACFM6C_000753"
     CDS             complement(13544..14500)
                     /locus_tag="ACFM6C_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HFC6158241.1"
                     /translation="MNTAAIYRQYQTYVRSDKSGWALDGCSDSALIAQAKQPGLHLEM
                     CINRFDSGITLSRMRGGGTGAFPTEIHNFSHNCALFVMVSGQNRLQMGGREYRPSAGE
                     IWLVRGELADVSETLLPDNSGMCALHLDFSLEKLRRWHDEGLLDERLFSPQTIGRFAL
                     QRLAQNAAALTAAACPLLQRPFESDGFGLLADEAAALELSARLLRFTFRRHDNGYRRR
                     RIDEAADILQHEFARPLTIAEIARRVGLNECYLKRYFKAQTGETVAGCLRRLRLEHAL
                     ALIESGSTVQAAMHFCGYRHAGRFNEAFRRHYGFLPSDVKKC"
     gene            14736..15701
                     /locus_tag="ACFM6C_000754"
     CDS             14736..15701
                     /locus_tag="ACFM6C_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6158242.1"
                     /translation="MKPRFYWAACAVLLTACSPEPAAEKTVSAASASAATLTVPTARG
                     DAVVPKNPERVAVYDWAALDTLTELGVNVGATTAPVRVDYLQPAFDKAATVGTLFEPD
                     YEALHRYNPQLVITGGPGAEAYEQLAKNATTIDLTVDNGNIRTSGEKQMETLARIFGK
                     EARAAELKAQIDALFAQTREAAKGKGRGLVLSVTGNKVSAFGTQSRLASWIHGDIGLP
                     PVDESLRNEGHGQPVSFEYIKEKNPDWIFIIDRTAAIGQEGPAAVEVLDNALVRGTNA
                     WKRKQIIVMPAANYIVAGGARQLIQAAEQLKAAFEKAEPVAAGKE"
BASE COUNT         3619 a         4893 c         4422 g         3213 t
ORIGIN      
        1 aggaactgat gttccctgtc gccaaaattg ctggtacacg cacacagcag caatgccgcc
       61 catacaaccg gtttcataca catctcccat taaagccaaa cattatacag ccgtccaaac
      121 cgattaaatt catattttaa aacaatatcc tgcctccaaa acccacatcg tgctataatc
      181 cacaccgatt ttcagacggc atcgtcatgc cgtctgaaat tttttcattc caacaacaat
      241 cagccccgcg attacggctg cctgagaaag acacaaacca tgaaaaaagt atttatccgc
      301 accttcggct gccagatgaa cgaatacgac agcgacaaaa tgctcgccgt cctcgccgaa
      361 gaacacggcg gcatcgaaca ggttacccaa gccgacgaag ccgacatcat cttgttcaac
      421 acctgctccg tgcgcgaaaa agcgcaagaa aaagtcttct ccgatttggg gcgcgtgcgt
      481 ccgctcaaag aaaaaaaccc cggcctcatc atcggcgttg ccggttgcgt cgcctcgcaa
      541 gaaggcgaaa acatcgtcaa acgcgcgccg tatgtggacg tggttttcgg cccgcaaacg
      601 ctgcaccgcc tgcccaaaat gattgtggac aaagaaacca gcgggctgtc gcaagtcgat
      661 atttcctttc ccgaaatcga aaaattcgac cacctgccgc ccgcccgcgt cgaaggcggc
      721 gcggcatttg tatcgattat ggaaggctgt tccaaatact gctccttctg cgtcgtcccc
      781 tacacgcgcg gcgaagaatt ctcccgcccg ctcaacgacg tattgacaga aatcgccaac
      841 cttgcccagc aaggcgtgaa agaaatcaac ctcttgggac aaaacgtcaa cgcctattgc
      901 ggcgaaatgg acgacggcga aatctgcgac ttcgccaccc tgctgcgcat cgtccacgaa
      961 atccccggca tcgaacgtat gcgcttcacc accagccacc cgcgcgagtt taccgactcg
     1021 attatcgagt gctaccgcga cctgcccaaa ttggtttccc acctgcacct gccgattcaa
     1081 agcggttccg accgcgtatt gagcgcgatg aaacgcggct acaccgcttt ggaatacaaa
     1141 tccatcatcc gcaaactgcg tgccatccgt cctgatttat gcctgagcag cgatttcatc
     1201 gtcggcttcc ccggcgagac cgaacgcgag ttcgagcaaa ccttgaaact ggtgaaagac
     1261 attgccttcg acttgagctt cgtgtttatt tacagtccgc gccccggcac gcctgccgcc
     1321 aacctgcacg acgacacgcc gcacgaagaa aaagtgcgcc gcctcgaagc cttgaacgaa
     1381 gtcatcgaag ccgaaaccgc gcgcatcaac caaacgatga tcggcacggt tcaacgctgc
     1441 ctggtcgaag gcatctccaa aaaagacccc gaccagctcc aagcccgcac cgccaacaac
     1501 cgcgtcgtca actttaccgg cacgcccaac atgattaacc aaatgatcga tttggaaatc
     1561 accgaggcct acaccttctc cctgcgcggc aaagttgtcg aagcctaaac ccttacgccg
     1621 aaaaaatgcc gtctgaagcg tttcagacgg cattttgcct tgtatcggca gacgatggcg
     1681 cggccaggcg gcttaatttg ccgcatcccg atccgacaac cacgcgcgca cacgccgttc
     1741 caccgcttcg gcactcaagc ccaaatcgtc taaaagtttt ttcggatcgc cgtgtccggt
     1801 tacggtatcg gcaacgccca aaagcaaaac gggtttgcag atgccgtgtt tcgccaatac
     1861 ttccagcacc gcgccgcctg cgccgccctg ttcggcgttt tcttcaaggg taacgatgcg
     1921 gtcgtggctt cgggcaaggc ggacaatcaa ctcttcgtct atcggtttga cgaagcgcat
     1981 atcggcgacg gtggcgttca gtttttcggc aaccgccaat gcgggggcga ccatactgcc
     2041 gaaggcaatg aatgcggttt tctcaccttc gcggcggata atgcccttgc cgatttccac
     2101 ggtttccatg ccgtctgaaa ccggcgcgcc cgtacccgtg ccgcgcggat agcggacggc
     2161 ggcgggcgcg tctgcctgat agcaggtcga aagcaacagg cggcattcgt tttcatcgct
     2221 cggcgcggcg acaatcatgt tcggcacgca gcgcaaaaag ctcaaatcgt acagaccggc
     2281 atgggtcggg ccgtccgcgc cgacgatgcc cgcgcggtcg acggcaaaca aaacgggtag
     2341 gttttgcagg gcgatgtcgt gcaccagttg gtcgtaggcg cgttgtaaaa aggtggaata
     2401 aatcgccacg acgggcttca tgccttcgca cgccaaaccg ccggcaaagg taacggcgtg
     2461 ctgctcggca atgccgacat cgaaataacg gtcggggaat cgttgttcaa actcaaccaa
     2521 gccgctgccc tcgcgcatcg cgggcgtgat ggcgatcaaa cgctcgtctg ccgccgcccg
     2581 gtcgcacagc catttgccga acacttgggt ataggtcggt ttggcgacgg gcttgggttc
     2641 tttttcagac ggcatttgcg ccgcgccttc tttaggcagc ttggcgacgg cgtggtattt
     2701 gacggggtcg ttttcggcga gtttgtagcc gttgcctttt ttggtgatga cgtgcagaag
     2761 ctgagggcct ttgcggctgc gcaagtcttt caatacgtcc accagatttt cgacgttgtg
     2821 tccgtccacg gggccggtgt agcggaagcc gaagttttca aacaaagaca gcgactgttt
     2881 ggcgtgttcg gcttcttcgg caagggtttt gattttgtgt tcgacttttt gggcaaactc
     2941 catcgcgccg ggtattttgt ctaatacctt gcccgtttgc gctttgacgg tactcaacag
     3001 gccgtgcata tcgcgcacga cgttgctggc aaggtatttc ggcagcgcgc cgacgttggg
     3061 ggaaatcgac atttcgttgt cgttgaggac gaccagcaaa tccacatcca tatcgcctgc
     3121 gcaattcaag gcttcaaacg cctgccccgc cgtcatcgcg ccgtcgccga tgatggcgac
     3181 gctgcggcgg tcgctgccca agagtttgtc tgccgccgcc atgcccaacg ccgcgccgat
     3241 ggatgtggaa gaatgcccta cgccgaacgc gtcgtattcc gactcgctgc gttttgggaa
     3301 gccagctaaa ccgccgtatt ggcgcatggt gtgcatctgg tttttgcgtc cggtaaggat
     3361 tttgtgcgga tagctttggt gtccgacatc ccacaccagc ttgtcttcgg gcgtgttgta
     3421 cacatagtgc agggcgatgg tcagctcgac cgcacctaag ttgctggcga aatgaccgcc
     3481 ggtttgaccg acggattcca gcagaaaggc gcgcaactcg ccggcaaggc gcggcagctg
     3541 ttttttgtcc agacggcgca aatcttgcgg gctgtcaatc aggtcgagta gggggcttgg
     3601 gttcatggtg tgtctttttt atgtgtcgtc cgggtgcaac ggccaattat atatcaagag
     3661 tgtgcggctg acggctgatt ttgccgtatg tcattcgtcc tgccgcttgg cgcgcggatg
     3721 ggcttcgtca tacaggcggg cgatgtggtc gaaatcgagc ttggtataaa tctgcgtggt
     3781 cgaaaggctg ctgtgcccga gcagctcctg caccgcccgg atgtcgcgcg aagcctgcaa
     3841 caggtgtccg gcgtagctgt ggcgcatcat atgcggcgaa acgtgcctgc cgtcgccgtt
     3901 ttgcgccgcc cattgcgcca aacgtttttg gatttggcgt tggctcaggc gcgtgccgtt
     3961 cctgccggta aacagggctt tgccgtccga tgccgtctga cgcagcggca gatagttttt
     4021 cagagcttcc acgcttttgc cggtcagcgg aacctgccgc tgcttgcgtc ctttgccggt
     4081 aacgtgtacc cacgcctcgt ccaaatatac atcatctgca ttcaagccgt gtatctcgct
     4141 cacgcgcaaa ccgctgccgt acatcagttc gaacagcgcg tgatcgcgca ccgccagcgg
     4201 gtcgccgccg tccacgggca aatccagcat ccggttcagc cattcctgcg gcagggcttt
     4261 gggtacgcgc tcgggctgct tcggcggttt gatgtcggcg gtcgggtcgg tatgcagcag
     4321 accgcgttcc accagccaaa cacaatactg ccgccaagac gacagcttgc gcgccagcgt
     4381 ccgcgcattc aaaccgcgct gcgacagccg ccgcaacgcc gccgtaaaat cgcgccgcga
     4441 caagtcctgc ggcacgccgc cttcagcttc agacggcatt tgtgccaaca gcgcaaacag
     4501 ttcttccaaa tcgcgccggt atgcagcaac cgtgtgctcc gacttgccct cgcgcacgat
     4561 gttttccaaa taagcgtcaa aatgcgccgc aaacccgtcc aaaaccataa ccgtcccaca
     4621 caaatatcaa aaaaccagtg aaaacattat cataaacgac acaccaaaac cccgaaccgc
     4681 ccaaaatccg acccgtccgc ccgccgttat cgttaacata aaatcaatga gccgtttatg
     4741 gttttttgcc gcaaaaaaca ttataatccg ccttatttac ctattgccca aggagacaca
     4801 aatggcactc gtatccatgc gccaactgct tgatcatgct gccgaaaaca gctacggcct
     4861 gcccgcgttc aacgtcaaca acctcgaaca aatgcgcgcc attatggaag ccgccgacca
     4921 agtcaacgcg cccgtcatcg tacaggcgag cgcaggtgcg cgcaaatatg cgggcgcgcc
     4981 gtttttgcgc cacctgattc tggcggcagt cgaagaattt ccgcacatcc ccgtcgtgat
     5041 gcaccaagac cacggcgcat cgcccgacgt gtgccaacgc tccatccaac tgggcttctc
     5101 ctccgtgatg atggacggct cgctgatgga agacggcaaa accccttctt cttatgaata
     5161 caacgtcaac gccacccgta ccgtggttaa cttctcccac gcttgcggcg tatccgtcga
     5221 aggcgaaatc ggcgtattgg gcaacctcga aaccggcgaa gcaggcgaag aagacggtgt
     5281 aggcgcagtg ggcaaacttt cgcacgacca aatgctgacc agcgtcgaag atgccgtgcg
     5341 tttcgttaaa gataccggcg ttgacgcatt ggcgattgcc gtcggcacca gccacggcgc
     5401 gtacaaattt acccgtccgc ccacaggtga cgtgttgcgt atcgaccgca tcaaagaaat
     5461 ccaccaagcc ctgcctaata cacacatcgt gatgcacggc tccagctccg ttccgcaaga
     5521 atggctgaaa gtcattaacg aatatggcgg caatatcggc gaaacctacg gcgtgccggt
     5581 tgaagaaatc gtcgaaggca tcaaacacgg cgttcgtaaa gtcaacatcg ataccgacct
     5641 gcgccttgct tccaccggcg cggtacgccg ctaccttgcc gaaaacccgt ccgacttcga
     5701 tccgcgcaaa tacctgagca aaaccattga ggccatgaag caaatctgcc tcgaccgcta
     5761 cctcgcgttc ggttgcgaag gtcaggcagg caaaatcaaa ccggtttcct tggaaaaaat
     5821 ggcaaaccgt tatgccaagg gcgaattgaa ccaaatcgtc aaataacagg ttgcctgtaa
     5881 acaaaatgcc gtctgaaccg ttgttcggac ggtatttgat ttttgcttct ttgacctgcc
     5941 tcattgatgc aatatgcaaa aaaagatacc gcaaccaaaa cgtttatata ttatctattc
     6001 tgtgtatgac taggagtaaa cctgtgaacc gaactgcctt ctgctgcctt ttcctgacca
     6061 ccgccctgat tctgaccgcc tgcagcagcg gaggcggcgg aagcggaagc ggcggtgtcg
     6121 ccgccgacat cggcacgggg cttgccgatg cactaactac gccgctcgac cataaagaca
     6181 aaggtttgaa atccctgaca ttggaagact ccattcccca aaacggaaca ctaaccctgt
     6241 cggcacaagg tgcggaaaaa actttcaaag ccggcgacaa agacaacagc ctcaacacgg
     6301 gcaaactgaa gaacgacaaa atcagccgct tcgacttcgt gcaaaaaatc gaagtggacg
     6361 gacaaaccat cacgctggca agcggcgaat ttcaaatata caaacaggac cactccgccg
     6421 tcgttgccct acagattgaa aaaatcaaca accccgacaa aatcgacagc ctgataaacc
     6481 aacgctcctt ccttgtcagc ggtttgggcg gagaacatac cgccttcaac caactgcccg
     6541 gcggcaaagc cgagtatcac ggcaaagcat tcagctccga cgatgccggc ggaaaactga
     6601 cctataccat agatttcgcc gccaaacagg gacacggcaa aatcgaacac ctgaaaacac
     6661 ccgagcaaaa tgtcgagctt gccgccgccg aactcaaagc agatgaaaaa tcacacgccg
     6721 tcattttggg cgacacgcgc tacggcagcg aagaaaaagg cacttaccac ctcgcccttt
     6781 tcggcgaccg cgctcaagaa atcgccggct cggcaaccgt gaagatagga gaaaaggttc
     6841 acgaaatcgg catcgccggc aaacagtagc atttttgcgc cataccgccc taggacacga
     6901 cggcacggca ggcaagccgg tttcactata taatgccgtc tgaaccaacg agaaccacac
     6961 catgcaagcc gatttcaacc gtcccgtcct cgccgtcgat accggaactt cctatttgtc
     7021 gctcgcactg cgtgccgacg gcgaaacccg tctgttccat caggaagtcg gcagccgcca
     7081 gtccgaactg atcctgccgg aaatccgcac cctgttccgt gatgcgggca ttaccgccgc
     7141 cgatttgggt gcggtcgtgt acgcacaggg tcccggcgcg tttaccggac tgcgtatcgg
     7201 catcggtgtg gcgcaaggtt tggcaacgcc gttcaatacg cctttaatcg gcatccccac
     7261 gctcgctgcc gccgcctcgc tgccgccgcc gcaaagctgc atccttgccg ctacggacgc
     7321 tcgtatgggc gaagtgtttt atgcgtggtt cgacacgctg aaccgccgcc gtttgagcga
     7381 ttatcaagtc ggtagggcgg cagacattac cctccccgag gggtacgtct tttcagacgg
     7441 cataggcagc gcgtttacgc tggaaaactg tccgcccttc gcaggcaaac ccgatatgcc
     7501 gaccgccgcc gacttcctca atctggcggc ggatggcggt tttcccgccg tcgctgcggc
     7561 acacgccgag ctgctctacg tccgcaacaa aatcgccctg actgccaaag aacaggcgga
     7621 acggagggcg cgtccgtgaa catccgccgt gccgtttatg ctgattgcga ggagctggcc
     7681 gcactcgatg ccgtctgcaa cccgtccgca tggacgcaac gccaattcga atccgcactc
     7741 gtttcgccgt ccgaacaggt tttccttgcg gaaaaagacg gcgggattgc cgcctttatc
     7801 gtttggcaga acctgcccga cgaatccgaa ctgcacctga ttgccaccgc tttggaatac
     7861 cgccgccggg gtgtcgcgtc cgccctgctc gaatactggt tcgcacacct gcccgaaggc
     7921 acgaaacgcc tgctgcttga agtccgcgcg ggcaatatcg gcgcgcaggc gctgtacgcg
     7981 gcacacggct ttaccgatgc gggcaggcgg aaaaactatt accgtacagc cgacggtaaa
     8041 accgaagatg ccgtcttaat ggagaaaata tgttaagcgc gcgctacctc cacttgcacg
     8101 aagctttggg tttgggcccg atgtggttga agcggggggc cgtcgtcctg ccgccagcaa
     8161 cattgccggg aagcctacgc ccgcaaaagc aaaccgtcct tagcattccg cagcgtccgt
     8221 ccgaacagca tactggtcag gcacggctca aaaccatgaa agtgttggaa acagccgccg
     8281 tacatacgcg caaacccgtg cctgaaaccg aaacgcctct gcccggcgtt tcagacggca
     8341 tcgcccccgt tcccgccgct tcgggcataa ccaaacttgc cgtcgtcagc ctgtgcccgc
     8401 cgaccgagga tatggtttac gggcagctgt tccacggcaa agcgggtgtc ctgattgaca
     8461 acatactcaa agccgtagga ttggatgccg cttatgtaca caagaccagc tgggtgaaaa
     8521 ccgctgctgt cggcaacccg atgccgtctg aacaggccat cgcgaatgcg ctgggtcaaa
     8581 tcgcccgtga actcgacggc tgccgcgccc ccgccgtcct tttcctcggg caggcttttg
     8641 tccagcctga acggcaaacg atgattgaaa ctttgtgcgg tagccgtccc ttcttcatca
     8701 tcgaccatcc cgcccgactt ttacgccaac ccgaactcaa agcccgaaac tggcaggtgt
     8761 tgaaacagtt gaaacgcgcc ttgcaggcag gcggcagttg aagcaggccg catggggcgg
     8821 tagaatcaca actgcatcgc aatacctgac agaaagcaaa aaatgaccga tttccgccaa
     8881 gatttcctca aattctccct cgcccaaaac gtcttaaaat tcggcgaatt taccaccaag
     8941 gcaggacggc agtcgcctta cttcttcaat gccggtctct tcaacgacgg cgcgtccacg
     9001 ctgcaactgg caaaattcta tgcacaatcc atcattgaaa gcggcatcca attcgatatg
     9061 ctgttcggtc ccgcctacaa aggcattatt ttggcggcgg caaccgcgat gatgctggtg
     9121 gaaaaaggcg tgaacgtccc gtttgcctac aaccgcaaag aagccaaaga ccacggcgaa
     9181 ggcggcgtgt tggtcggcgc gccgcttaaa gggcgcgtgc tgattatcga cgatgtgatt
     9241 tccgccggca catccgtacg cgaatcaatc aaactgattg aagcggaggg tgcaaccccc
     9301 gctggtgtcg ccatcgcgct cgaccgcatg gaaaaaggca ccggtgaatt gagcgcggtt
     9361 caggaagtgg aaaaacaata cggtctgccc gtcgccccca tcgccagcct gaacgatttg
     9421 tttatcctgt tgcaaaacaa ccccgaattc ggacagttcc tcgaacctgt ccgagcctac
     9481 cgtcggcagt atggcgtaga ataaaaacaa agcatatgcc gtctgaacca ccttacgcct
     9541 cagacggcat caaacctgac acacacgagg aaataccatg cccgcctgtt tctgccccca
     9601 ctgcaaaacc cgtctctggg tcaaagaaac ccagctcaat gtcgcccaag gcttcgtcgt
     9661 ctgccaaaaa tgcgaaggga tgtttaaagc caaagaccat ctggcaagca cgaaagaacc
     9721 tatattcaac gatttgcccg aggctgtttc ggatgtcaaa ctcgttcacc gcatcggcac
     9781 gcacgccatt ggcaagaaac agatttcccg cgacgaaatc gccgatatcc tcaacggcgg
     9841 tacaaccctg cacgatacgc cgcctgcgcc tgccgccgcc cctgctgccg caccgcaggt
     9901 tgccgtacca cccgccgcgc ccgcccgtca ggatgggttc aactggacga ttgcaaccct
     9961 gtttgccctt atcgtcctca ttatgcagct ttcctacctc gtcatcctat gatcgtgccc
    10021 gacctctttg tcgcccactt ccgcgaagcc gccccctaca tccgccaaat gcgcggcaaa
    10081 acgctggtcg ccggcataga cgaccgcctg ctcgaaggcg ataccttaaa caagctcgcc
    10141 gccgacatcg ggctgttgtc gcaactgggc atcaggctcg tcctcatcca cggcgcgcgc
    10201 cacttcctcg accgccacgc cgccgcgcaa ggccgcacgc cgcattattg ccggggcttg
    10261 cgcgttaccg acgaaacctc gctcgaacag gcgcagcagt ttgccggcac cgtccgcagc
    10321 cgttttgaag ccgcattgtg cggcagcgtt tccgggttcg cgcgcgcgcc ttccgtcccg
    10381 ctcgtatcgg gcaacttcct gaccgcccgt ccgataggtg tgattgacgg aaccgatatg
    10441 gaatacgcgg gcgttatccg caaaaccgac accgccgccc tccgtttcca actcgacgcg
    10501 ggcaatatcg tctggctgcc gccgctcgga cattcctacg gcggcaagac cttacatctc
    10561 gatatgcttc aaaccgccgc ctccgccgcc gtctcgcttc aggccgaaaa actcgtttac
    10621 ctgacccttt cagacggcat tgcccgcccc gacggcacgc tcgccgaaac cctctcggcg
    10681 caggaagcgc aatcgctggc ggaacacgcc ggcggcgaaa cgcgacggct gatttcgtcc
    10741 gccgttgccg cgctcgaagg cggcgtgcat cgcgtccaaa tcctcaacgg agccgccgac
    10801 ggcagcctgc tgcaagaact cttcacccgc aacggcatcg gcacgtccat tgccaaagaa
    10861 gccttcgtct ccatccggca ggcgcacagc ggcgacatcc cgcacattgc cgccctcatc
    10921 cgcccgctgg aagaacaggg catcctgctg caccgcagcc gcgaatacct cgaaaaccac
    10981 atttccgaat tttccatcct cgaacacgac ggcaacctgt acggttgcgc cgccctgaaa
    11041 acctttgccg aagccgattg cggcgaaatc gcctgccttg ccgtctcgcc gcaggcacag
    11101 gacggcggct acggcgaacg cctgcttgcc cacattatcg ataaggcgcg cggcataggc
    11161 ataagcaggc tgttcgccct ctccacaaat accggcgaat ggtttgccga acgcggcttt
    11221 cagacggcat cggaagccga gttgcccgaa gcgcggcgca aagcctaccg caacaacgga
    11281 cggaactcgc atattctggt gcgtcgcctg caccgctgac cgcaacggaa agccgccgca
    11341 gaaatgccgt ctgaaccccg tttcagacgg catttccccg attataaaga cctgcccaac
    11401 cctcaaggac cccgatgaaa tcctaccccg acccctaccg ccattttgaa aacctcgatt
    11461 ccgccgaaac gcaaaacttc gctgctgaag cgaatgccga aacgcgcgcg cgttttttaa
    11521 acaacgacaa ggcgcgcgcg ctttcagacg gcattttgaa tcaaatgcag gacacgcggc
    11581 agattccgtt ttgtcaggaa caccgcgcgc ggatgtacca tttccatcag gacgcggaat
    11641 atccgaaggg cgtgtaccgc gtgtgtacgg cggcgacgta ccgttccggc tatcccgagt
    11701 ggaaaatcct gttttcagtg gcggatttcg acgagctgct cggcgacgat gtatatctag
    11761 gcggcgtgtc gcacttggtg gaaaagccca accgcgcact gttaacacta agcaaatcag
    11821 gcggcgatac ggcgtacacg ctggaagtgg atttggaagc aggggagttg gtcgaaggcg
    11881 gttttcactt tccggcaggc aaaaaccatg tgtcgtggcg cgatgaaaac agcgtgtggg
    11941 tgtgtccggc ttgggacgaa cgccagttga ccgaatcggg ctatccgcgc gaggtgtggc
    12001 tggtggaacg cggcaagagt ttcgaggaaa gcctgcctgt gtatcaaatc gataaaggtg
    12061 caatgatggt gaacgcgtgg cgttatctcg atccgcaagg ttcgccgatt gatttgattg
    12121 aagcgtcgga cggtttttac accaaaacct atttgcaggt gtcgtcggaa ggcgaggcga
    12181 aaccgttaaa cctgcccaac gattgcgacg tggccggcta tctagccgga catcttttgc
    12241 tgacattgcg taaagactgg caccgcgcga accaaagcta tccgagcggc gcgctggtag
    12301 cggtgaaact gaatcgcggc gaaatcgggg cggcgcagct tttgtttgcg cccgatgaaa
    12361 cgcaggcatt ggaaagcgtg gaaacgacca agcgttttgt ggtggcgagc ctgctggaga
    12421 acgtacaagg ccgtctgaaa gcgtggcgtt ttgccgacgg caaatggcag gaagtcgaac
    12481 tgccgcgcct gccttcgggc gcgttggaaa tgaccgacca gccttggggc ggcgacgtgg
    12541 tttaccttgc cgccggcgat ttcaccacac cgctgacgct gtttgcgctg gatttgaacg
    12601 tgatggaact gaccgtcatg cgccgccagc cgcagcagtt cgattcagac ggcatcgaag
    12661 tgcggcagtt ttggacgact tctgccgacg gcgagcgcat tccttatttc cacgtcggca
    12721 aaaacgccgc gcccgatact ccgactttgg tctatgccta cggcggtttc ggtattcccg
    12781 aattgccgca ttatctgggc agcatcggca aatactggct ggaagagggc aacgccttcg
    12841 tgttggcgaa catacgcggc ggcggcgagt tcggcccgcg ctggcatcag gcggcgcagg
    12901 gcatcagcaa acacaaaagc gtcgacgatt tgcttgccgt tgtgcgcgat ttgtccgaac
    12961 gcggcatgag tttgcccgaa cacatcggtt tgcagggcgg cagcaacggc ggcctgatta
    13021 ccgccgccgc cttcgtgcgc gaaccgcaaa gcatcggcgc gctggtgtgc gaagtaccgc
    13081 tgaccgacat gatccgctat ccgctgctct ccgccggcgc aagctggacg gacgaatacg
    13141 gcaatccgca gaaatacgaa gtctgcaaac gccagttggg cgaattgtcg ccgtatcaca
    13201 atctttcaga cggcatcgat tatccgcccg cactcatcac caccagcctc agcgacgacc
    13261 gcgtccatcc cgcccacgcg ctcaagtttt acgccaaact gcgcgaaacc tcgccgcaat
    13321 cttggctcta ctcgcctgac ggcggcggcc ataccggcaa cggcacgcaa cgcgaatccg
    13381 ccgacgaact cgcctgcgtg ttgctgtttt tgaaagagtt tttgggctaa gggcggggag
    13441 cggcactgcc gccgcgaatg aaaaaaggtc gtctgaaact gctttttcag acgacctttt
    13501 ttaatggttg tttcaaatca aaatatctat gccgccggcc ccatcagcac ttcttcacat
    13561 ccgaaggcaa aaatccgtaa tgccgtctga acgcttcgtt gaaccgtccc gcgtggcggt
    13621 agccgcaaaa gtgcatggcg gcttggacgg tgctgccgga ttcgatgagg gcgagcgcgt
    13681 gttccagccg caggcggcgc aggcatccgg cgacggtttc gccggtttgc gctttgaaat
    13741 agcgtttcag gtagcattcg ttcagtccga cgcggcgggc gatttcggcg atggtcagcg
    13801 gacgggcgaa ttcgtgttgc aggatgtcgg cggcttcgtc tatgcgccga cggcggtaac
    13861 cgttgtcgtg gcggcggaag gtgaagcgca ataatcgggc ggagagttcc agcgcggcgg
    13921 cttcgtcggc aagcaggccg aagccgtccg attcgaacgg gcgttgcagc agtgggcagg
    13981 ccgccgccgt cagtgccgct gcgttttgcg ccagccgttg cagggcgaat cggcctatcg
    14041 tttgcggcga aaacaggcgt tcgtccagca agccttcgtc gtgccagcgg cgcagttttt
    14101 ccagcgaaaa atccaaatgc agcgcgcaca tgccgctgtt gtcgggcagc agggtttcgg
    14161 atacgtccgc caactcgccg cgtaccagcc agatttcgcc ggcagatggg cggtattccc
    14221 tgccgcccat ttgtaaccgg ttctgccccg acaccatgac gaacaaggcg cagttgtggc
    14281 tgaaattgtg gatttcggtg ggaaacgcgc ccgttccgcc gccgcgcatc cgcgacaagg
    14341 tgatgcccga gtcgaagcgg ttgatgcaca tttccagatg caaaccgggc tgttttgcct
    14401 gcgcaatgag cgcgctgtcg gaacagccgt ccaacgccca gccggattta tcggagcgga
    14461 cataggtttg gtactggcgg tagatggcgg cggtgttcat gattggatag gaacgagttg
    14521 tctaacaaat gaattaaata ggaattatta ccaataatca agcgcaggga ttggttgaaa
    14581 cggaaaaggt cgtctgaaag ggtgtttcag acgacctttt ccgtatcggg aatttgtttt
    14641 gccgtatcgg gaattttgcg ttttgcggcg tggtttctgc aggttgtttg cttaataata
    14701 aacattctta ttcgtatgca aaggaaccgc acaccgtgaa accgcgtttt tattgggcag
    14761 cctgcgccgt cctgctgacc gcctgttcgc ccgaacctgc cgccgaaaaa actgtatccg
    14821 ccgcatccgc atctgccgcc acgctgaccg tgccgaccgc gcggggcgat gccgttgtgc
    14881 cgaagaatcc cgaacgcgtc gccgtgtacg actgggcggc gttggatacg ctgaccgagc
    14941 tgggcgtgaa tgtgggcgca accaccgcgc cggtgcgcgt ggattatttg cagcctgcat
    15001 ttgacaaggc ggcaacggtg gggacgctgt tcgagcccga ttacgaagcc ctgcaccgct
    15061 acaatcctca gcttgtcatt accggcgggc cgggcgcgga agcatatgaa cagttggcga
    15121 aaaacgcgac caccatagat ctgacggtgg acaacggcaa tatccgcacc agcggcgaaa
    15181 agcagatgga gaccttggcg cggattttcg gcaaggaagc gcgcgcggcg gaattgaagg
    15241 cgcagattga cgcgctgttc gcccaaacgc gcgaagccgc caaaggcaaa ggacgcgggc
    15301 tggtgctgtc ggttacgggc aacaaggtgt ccgccttcgg cacgcagtcg cggttggcaa
    15361 gttggataca cggcgacatc ggcctaccgc ctgtagacga atctttacgc aacgaggggc
    15421 acgggcagcc tgtttccttc gaatacatca aagagaaaaa ccccgattgg attttcatca
    15481 tcgaccgtac cgccgccatc gggcaggaag ggccggcggc tgtcgaagta ttggataacg
    15541 cgctggtacg cggcacgaac gcttggaagc gcaagcaaat catcgtcatg cctgccgcga
    15601 actacattgt cgcgggcggc gcgcggcagt tgattcaggc ggcggagcag ttgaaggcgg
    15661 cgtttgaaaa ggcagaaccc gttgcggcgg ggaaagagta gggagtcgtc tgaaaacgga
    15721 gcttccgaag gaagcggggg gtttctgcga agctaaagtg cggtttcaac gaattgaaaa
    15781 gcagcctgta tgttgaaaat accgctcaag caaacctacg gtttgccgcc ctctccctag
    15841 ccctctccca cagggagagg ggattggggt gcaggctgtc tttaaggttc aggcaaattt
    15901 ttaacttcgt tgaagctccg ttttcagacg accttttgga gtaccgcagg cacacgcatc
    15961 gaacggctga atcaaagttc agaccgatgg cagcccgcac ccgagtttat gcggcaaaca
    16021 gcgaggctac ggcaacccgt cccctctccc tgtgggagag ggttagggag agggcagtaa
    16081 gccgtaggct tacatcaaag ccgataacgc tttcacaaag cctgtgtgca ctgaaaactg
    16141 aaaggtc
//
LOCUS       DAXHPV010000033        16065 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.033, whole genome shotgun sequence.
ACCESSION   DAXHPV010000033 DAXHPV010000000
VERSION     DAXHPV010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16065)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16065)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16065
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.033"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(26..124)
                     /locus_tag="ACFM6C_000755"
                     /pseudo
     CDS             complement(26..124)
                     /locus_tag="ACFM6C_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244588.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter"
     gene            complement(229..726)
                     /locus_tag="ACFM6C_000756"
     CDS             complement(229..726)
                     /locus_tag="ACFM6C_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter"
                     /protein_id="HFC6158243.1"
                     /translation="MNVKVHKDTHHFGIHNLNNTDVHLTAEDSDNVIEIKGELADLMP
                     TGNVESTSFLRGIETAFKSNTVLTGNNNKISIATEGKGLGLGVNGLQSNSPYSGHTTG
                     IFINNQSSDLTQPSLDGISTIKLKAVKGNNEVDLNVKNHASVKGIIASHSAKATLEAE
                     GDNIV"
     gene            complement(812..1234)
                     /locus_tag="ACFM6C_000757"
     CDS             complement(812..1234)
                     /locus_tag="ACFM6C_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158244.1"
                     /translation="MEWVSLFSDPQRDDDSLITLKDEKITVKNYIVPWWKKGENFRKL
                     ELITTGKNDNGNLTVNGIYGIQSFADSQLGYTPELLVKSNNDILFKNNFQSVDVKPHS
                     GNIHLDAKGKIQFNLNVPDVDGVQDVASGKKYRQTIVP"
     gene            1546..2856
                     /locus_tag="ACFM6C_000758"
     CDS             1546..2856
                     /locus_tag="ACFM6C_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HFC6158245.1"
                     /translation="MTDLFAREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVEG
                     GKPHSMLLWGPPGVGKTTLAQILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQG
                     RATILFVDEVHRFNKAQQDAFLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQ
                     PLSSDDLKKLIAKVLALPEYQEFTIETDAQKLLVNTADGDARRLLNLLEQLLRAADTR
                     RLKNLTAEFLADSLGAQIRRFDKGGESFYNQISALHKSVRGSHPNAALYWFCRMLDGG
                     TDPRYLARRIVRIAWEDIGLADPRAFQIANDAAATFERLGSPEGELALAQAVLYLAAA
                     AKSNAGYKAYNQMRRFVKENASDEVPVHLRNAPTKLMKELGYGREYRYAHDEPNAYAA
                     GESYMPDGLDEPDFYQPVPRGLEIKIGEKLAWLKSLDEEALKAK"
     gene            2970..5975
                     /locus_tag="ACFM6C_000759"
     CDS             2970..5975
                     /locus_tag="ACFM6C_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease"
                     /protein_id="HFC6158246.1"
                     /translation="MSQTHNENSRVKIPAVLHLMRLGYDYLSLKNENWDKPTNIFPKI
                     FIESLCRINPDLSPDDARRLLTDIRLELDNEDLGQKFYERLTNQSGGKKLIDFQNFDN
                     NSFHVVTELPCINGDEEFRPDITLLVNGMPLVFIEVKKPNNKGGIGEERERMGKRAKN
                     SKFRRFISITQFMIFSNNMEYDDGATEPAQGAFYASSAYGKPVFNYFREEHKLNLAEL
                     LNTLSDGLENNVLQDNNLPVIKHSPEFISNKSPDTPTNRILTSLLCRERLSFLLQHGL
                     TYVKASQGLVQKHIMRYPQLFATLAIEKHLANGGKKGVIWHTQGSGKTALAYYNTRYL
                     THYYAKQGIVPKFYFIVDRLDLLKQAQREFTARDLVVHTIDSREAFAADIKSAQTLHN
                     HAGKAEITVVNIQKFQDDPDVVARNDYDLAIQRVYFLDEVHRSYNPKGSFLANLNQSD
                     VNAVKIGLTGTPLIGVTAGNVNTRELFGDYIHKYYYNASIADGYTLRLIREEIGSRYK
                     AQLQEALAQLEIEKGSFDRKEIYAHPHFVHPMLDYILDDFAKFRKTNQDDSLGAMVVC
                     DSAEQARQLFEHFQIASDHNFTAALILHDVGTKDERDQWVKDFKAGKIDILFVYNMLL
                     TGFDAPRLKKLYLGRLIKAHNLLQTLTRVNRTYKSYRYGYVVDFADIEREFDKTNRAY
                     WDELSNELGDEIGSYSRLFKTAEEIEQEIADIKNALFDFDTENAEEFCSQISQIADKK
                     QLLALKKALQTAKKLYNVLRLQGSHEFLAHLDFDKLNLLYRETAARLETLNLAEKLQQ
                     GDTAHLLNEALEDVYFQFVKIGEAELKLADDLKDIMRKVREGLAGNFDQEDPEYISLR
                     EELERIFKKKNLAEVGQEEMQANIAILETVYAKIKELNRQNDLLRHKYGGDAKYARIH
                     KRLRENPALYGDKLKVFNALNGVKTDTDQKVLDMEQILDNQNYFEKQMQGIVLKRFRT
                     EQQFPVQPADIQAINRLLVREYLKESGRI"
     gene            6024..7013
                     /gene="rhuM"
                     /locus_tag="ACFM6C_000760"
     CDS             6024..7013
                     /gene="rhuM"
                     /locus_tag="ACFM6C_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004143539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RhuM family protein"
                     /protein_id="HFC6158247.1"
                     /translation="MYNNDIIIYTTEDGLSEFTLRELDGELWLTQKEIAELYQTSKQN
                     IGKHIKAIFAEQELDDSVVNFQFTTAADGKNYRMGLYPLSLIIAVGYRVRSTRGTQFR
                     QWATRTLGEYISKGFVLNDDRLKNPPVGTNRAEDQFEQLLNRIRDIRSSERRMYLRVR
                     EIFAMAADYQPSFKETTHFFKIIQNKLHYACTRYTAPEIIYQRADAGKPNMGLTHWRG
                     KEIAKADVTVAKNYLNEAEIDALNRIVSMWLDFAEDQASMKKQIFLQDWAEKLDAFLA
                     FNDRQVLQTAGTISKTQADEKARIEYEKFAAARRLEKEREGERHIAELLNLKK"
     gene            7107..8264
                     /locus_tag="ACFM6C_000761"
     CDS             7107..8264
                     /locus_tag="ACFM6C_000761"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HFC6158248.1"
                     /translation="MNSALKNHATYINNKVDTNEISLSQYISTDNILQNKQGIECATS
                     LPIQGGKVTSFKKGDILLANIRPYLKKIWYAQFDGGCSADVLAIRANTETDSHFLFYA
                     LFRDDFFIHAMKGAKGTKMPRGDKTQIMEFKIPVFDLKTQQSIAAVLSTLDKKIALNK
                     QINARLEEMAKTLYDYWFVQFDFPDANGKPYKSSGGEIVFDETLKREIPKGWGSIELQ
                     SCLAKIPNTTKILNKDIKDFGKYPVVDQSQDFICGFTNDEKSILNPQDAHIIFGDHTR
                     IVKLVNFQYARGADGTQVILSNNERMPNYLFYQIINQIDLSSYGYARHFKFLKEFKII
                     LPSKDISQKYNEIANTFFVKVRNNIKQNHQLTQLRDFLLPMLMNGQVSVAE"
     gene            8312..9913
                     /locus_tag="ACFM6C_000762"
     CDS             8312..9913
                     /locus_tag="ACFM6C_000762"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HFC6158249.1"
                     /translation="MTEQHFTEQTKSLIDSLKTICANYGLGNDGNEFKIISQAFLYKF
                     LNDKYDFEVKQIRKENPDEPIEFINMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFD
                     DTLTDIAAHNAELFSVKTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEA
                     IFAQKFDFFATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRSVD
                     VYDPSAGSGTLLMNVAHAIGEDKCMIYTQDISQKSSNLLRLNLILNNLVHSLNNVVQG
                     NTILSPAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLEGEENRERFFAGIPKIKAKD
                     TDKMEIYQLFIQHILFSLKENGKAAIVLPTGFITAQSGIDKKIREHLVENKMLAGVVS
                     MPSNIFATTGTNVSILFIDKANKDKVVLIDASGLGEKIKDGKNQKTVLSREEEQKICN
                     TFTHKQAVEDFSVVIGYDEIKAKNHSLSAGQYFEVKIDYVDISADEFAQKMAGFSADL
                     DKLFAESAELEKEIKDRLAMLKFNS"
     gene            9945..10061
                     /locus_tag="ACFM6C_000763"
     CDS             9945..10061
                     /locus_tag="ACFM6C_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter"
                     /protein_id="HFC6158250.1"
                     /translation="MPSESLSDGILFGLENTYAVLSLKERIQKTKATGIYRK"
     gene            complement(10221..11558)
                     /gene="ribBA"
                     /locus_tag="ACFM6C_000764"
     CDS             complement(10221..11558)
                     /gene="ribBA"
                     /locus_tag="ACFM6C_000764"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA];
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HFC6158251.1"
                     /translation="MTDTAGLRRHNLRQWIEKYYGGLQTRFAEAVALNTGELSALLKN
                     KSFGEKKARKIEQAAKMPAFWLDTEHTARPSEHTGKHTMSHISPIPEILADIKAGKMV
                     IITDAEDRENEGDLLMAAQFVTPEAINFMIKHARGLVCLPMDGEMVEKLGLPMMTQKN
                     GAQYGTNFTVSIEAAHGITTGISAADRALTIQTAVSPTAKPEDIVQPGHIFPLRAQKG
                     GVLVRAGHTEAGVDLAQMNGLIPASVICEIINDDGTMARMPELMKFAEEHKLKIGTIA
                     DLIEYRSRTESLLEDMGNAPVQTPWGEFQQHVYVDKLSGETHLALVKGTPSADTETLV
                     RVHEPFSVMDFIQANPRHSWSLPKALERVQQAESGVVILLHRTEDGASLLDRTLPKGA
                     NQAYKWDSKSYGIGAQILTGLNVKKLRVLGQPSSFTGLTGFGLEVVGFEEAEK"
     gene            11666..11797
                     /locus_tag="ACFM6C_000765"
     CDS             11666..11797
                     /locus_tag="ACFM6C_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158252.1"
                     /translation="MPSEAGFVASDGIAAIPAGGAAVSSRPLPIRGLPEAYSEKNFW"
     gene            complement(11773..12786)
                     /locus_tag="ACFM6C_000766"
     CDS             complement(11773..12786)
                     /locus_tag="ACFM6C_000766"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6158253.1"
                     /translation="MIFSIIVPIYNVEKYLRCCVDSVLAENFADYEMILVDDGSPDGC
                     GKICDEYAGKYPHIKVIHQENGGLSDARNAGIRAAKGDYLIFLDSDDYWADTNRSKNA
                     GGGILFDLQQLADKKVDLILHPSSLNYHVIPKGADFSDNDFVRHFETLVEGRYYIANA
                     WTKIVRREIIIKNNLFFPKGYIHEDFPYSLQLARFIKTFAFYDNPFYQYRVLGGSISH
                     NIKYKNFSDVLTHLDRGVDFLVENKNSPIYGGLQKFVFDNIGYLRSILVRLYFSKNII
                     LIYRKYFSFKEKCRKIFGAKAIRPVFIGKTAFIIGLPILRLLVPPMLYPAIKAVYQKF
                     FSE"
     gene            complement(12954..13547)
                     /gene="ribA"
                     /locus_tag="ACFM6C_000767"
     CDS             complement(12954..13547)
                     /gene="ribA"
                     /locus_tag="ACFM6C_000767"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HFC6158254.1"
                     /translation="MSEMLNHVASCRLPTEWGVFTMHGFEEANGQEHVALTVGDFSDG
                     NPVLTRIHSECLTGDALFSRKCDCGPQLEAAMRAVQTEGRGIIVYLRQEGRGIGLINK
                     IRAYHLQDQGMDTVEANLALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLK
                     DAGINVVERIPLHVGENLENKRYLQTKADKLGHLMSE"
     gene            complement(13540..14217)
                     /locus_tag="ACFM6C_000768"
     CDS             complement(13540..14217)
                     /locus_tag="ACFM6C_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158255.1"
                     /translation="MPAALIKDFLLTQGLKLPLDEVRAAYLTAQTVMDMGTASIERSV
                     LWLEHEDWRLADYLEQNSGNEEGLKRLFMALDSVFSRCKGVRAAAVYALMPSENAAFR
                     LVCLSRQGEVLENLWDLDEAAGKVSLACRSAQSGWMNIASDVRRWLDLGELSGERNHA
                     SAAQISIPVCTESGGVLGVVHVEFECAECAGTAAQVEWVALALALSEPLKLLLGMSAG
                     KDGSEDV"
     gene            14371..14455
                     /locus_tag="ACFM6C_000769"
     tRNA            14371..14455
                     /locus_tag="ACFM6C_000769"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:14405..14407,aa:Leu,seq:tag)
     gene            14976..16010
                     /gene="purM"
                     /locus_tag="ACFM6C_000770"
     CDS             14976..16010
                     /gene="purM"
                     /locus_tag="ACFM6C_000770"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HFC6158256.1"
                     /translation="MSTSLSYRDAGVDIDAGDQLVENIKPFAKRTMRPEVLGDLGGFG
                     ALVEIGKKYKNPVLVSGTDGVGTKLKLAFDWDKHDTVGIDLVAMSVNDILVQGAEPLF
                     FLDYFACGKLDVPRATDVIKGIAQGCEESGCALIGGETAEMPGMYPVGEYDLAGFAVG
                     VVEKENVITGRSIGVGDVVLGLASNGAHSNGYSLIRKIIERDNPDLDAEFDNGKTLRE
                     AVIAPTRLYVKPILAALEKFTIKGMAHITGGGITENVPRVLPENTVAQIDAKSWELPK
                     LFQWLQKAGNVETQEMYRTFNCGIGMVVIVAAEDADAVQGLLGEQGETVYRLGLIRER
                     QGDEHQTQVA"
BASE COUNT         4412 a         3953 c         3773 g         3927 t
ORIGIN      
        1 cgaggcaacg ccgtactggt ttttgttaat ccactataaa ctgacgcaaa tgccgttttg
       61 tacaattcca aaagttttca attccgttaa tgcgattttg ccgtttggcg aaatgcgtac
      121 tgttccagtc gtggattgaa cccccaccct gtatagttct ttcgaagcat tggggtattg
      181 ttttttcaaa gcatcgatta aagccgtatt ggtgtccgga tttttaacct agacaatatt
      241 gtccccttcg gcttcaagcg ttgcttttgc agaatgcgac gcgataatgc cttttacgga
      301 ggcgtggttt tttacattta aatcaacttc attatttccc ttgacggctt tgagcttgat
      361 ggtgctgatg ccatcaaggg aaggttgggt aaggtcgctt gattgattat tgatgaaaat
      421 gcccgtcgtg tgtccggaat agggggagtt ggactggaga ccatttacgc ccaatcccaa
      481 gcccttgccc tcggtggcga tggatatttt attgttattc cccgttaata cggtattgga
      541 tttaaaagcc gtttcaatgc cccttaaaaa acttgtactc tcaacatttc ctgtcggcat
      601 aaggtcggcg agttcccctt taatctcaat cacattatcg ctgtcttcgg cagtcagatg
      661 aacatcggta ttgttgaggt tgtgaatacc gaaatggtgt gtgtctttat gaactttaac
      721 gttcatattg aacaaattgc ctgtttttga atgaaaggat atgctgcctt tgtcattttc
      781 atcggggggc tgatagtgtt gacataccgc actaaggcac tattgtttgt cggtattttt
      841 ttccactggc tacatcttgt accccatcaa catcgggaac attcaaatta aattgaattt
      901 ttcctttggc atccaaatgg atatttccgg aatggggctt cacgtcaaca gattggaaat
      961 tatttttaaa tagaatatca ttattgcttt ttaccaataa ttcaggcgta tatcccaatt
     1021 gagagtctgc aaaagattgg atgccgtaaa ttccatttac cgttaaattt ccattatcat
     1081 ttttaccagt ggtaataagt tctaattttc taaagttttc accttttttc caccaaggca
     1141 caatatagtt ttttacagtg attttttcat ctttaagggt tataagacta tcatcgtctc
     1201 tttgcggatc agaaaataaa gacacccatt ccatctcttg aatattagta tattcatggg
     1261 cttccgcctc aaaacataat gccgattgaa tcaacaaagc aatggtagat aaagcaaatt
     1321 ttctatttta gtctccttaa tgtttaattg aaacgctgat ttgggtattg tcatgccggt
     1381 gcggaatcgg tctccgtgcc ggatatattg tgtgaagtct ctcgtctttt ccagtatgcg
     1441 cctaatatcg gcttaaggca aacggcgggg cggaatccgt atgcggcacg ccgccgttcc
     1501 ctgccgtata atcatattgt ttgaaaacct gttgacggag ccgttatgac cgatttgttt
     1561 gcccgagaac ccgacgcgcc gcttgccgaa cgattgcgtc cgcatacgct tgacgacgtg
     1621 gtggggcagg aacacctcat cggcgaaggt aaacctttgc gcgtggcggt agaaggcggc
     1681 aagccgcatt ctatgttgct gtgggggccg ccgggcgtgg gcaagacgac gttggcgcag
     1741 attttggcgc agagtttcaa cgcccagttt ttgcctgttt ccgccgtatt ttccggcgtg
     1801 aaggacatcc gcgaggcaat cgataaagcc gaaatcgctt tgcagcaggg acgcgcgacg
     1861 attttgtttg tcgatgaagt ccaccgcttc aacaaggcgc agcaggacgc gtttttgccg
     1921 catgtcgaaa gcggtttgct aacctttatt ggtgcgacga cggaaaatcc gtcgtttgaa
     1981 gtcaatcccg cgctgttgag ccgcgctcag gtgtatgttt tgcaaccctt gtcttcagac
     2041 gacctgaaaa agctgattgc caaggtattg gctttgcctg aataccaaga gtttacgatt
     2101 gaaacggatg cgcaaaaatt actcgtgaat accgccgacg gtgatgcgcg cagattgttg
     2161 aatttgttgg aacaactttt acgcgccgcc gatacacgtc gtctgaaaaa cttaaccgcc
     2221 gaatttctcg ccgacagtct cggggcgcaa atccgccgtt tcgacaaagg cggcgagagt
     2281 ttctacaacc aaatctccgc cctgcacaaa tccgtgcgcg gttcgcatcc gaacgccgcg
     2341 ctgtattggt tctgccgtat gctcgacggc ggcaccgacc cgcgctacct cgcccgccgc
     2401 atcgtgcgta tcgcttggga agacatcggg cttgccgacc cgcgcgcctt ccaaatcgcc
     2461 aacgatgccg ccgccacctt cgaacgctta ggctcgcccg aaggcgaact ggctttggcg
     2521 caagcggtat tgtatcttgc cgccgccgcg aaatccaacg cgggctacaa ggcatacaac
     2581 caaatgcgcc gtttcgtcaa agaaaacgcc agcgacgaag tacccgtcca cctgcgcaat
     2641 gccccgacca agctgatgaa ggaattgggc tacggacgcg aataccgcta cgcccacgac
     2701 gaaccgaacg cctacgccgc cggcgaaagc tatatgcccg acggcttgga cgaaccggac
     2761 ttctaccaac ccgtcccgcg cgggttggaa atcaaaatcg gcgaaaagct ggcgtggctc
     2821 aaatcgctgg atgaagaggc attaaaggca aaatgaagca atgccgtctg aagcagaaca
     2881 gtatggcaaa gccggtacac cgaaaaggcg tatcgggttt ttcaggtgtt ataatccgtt
     2941 tcaataaatt ttgatgaatc attacgttta tgtcccaaac tcacaacgaa aattcccgcg
     3001 tcaaaatccc cgccgttttg cacctgatgc gcttgggcta cgactacctc tcgctcaaaa
     3061 acgaaaattg ggataaacca accaacatct ttcccaaaat ctttatagaa agcctctgcc
     3121 gcatcaatcc cgatttgtcg ccggacgatg cacgccgttt gctgaccgac atacgcttag
     3181 aactggacaa cgaagacttg gggcaaaagt tttacgaacg ccttaccaat caatccggcg
     3241 gcaagaaact gatcgacttc caaaattttg ataacaacag cttccacgtt gtaaccgaat
     3301 tgccctgtat caacggcgat gaagaattcc gccccgacat taccctgctg gtaaacggca
     3361 tgcctttggt ttttatcgaa gtcaaaaagc ccaacaacaa aggcggaatc ggcgaagagc
     3421 gggagcgcat gggcaaacgt gcgaaaaatt ccaaatttcg ccgtttcatc agcatcaccc
     3481 aattcatgat tttttccaac aacatggaat acgacgacgg cgcaaccgaa ccggcacaag
     3541 gcgcgtttta cgcttcgtct gcttacggta agcccgtgtt taactacttc cgcgaagaac
     3601 ataaattaaa tcttgccgaa ttattgaaca cgctttcaga cggcctcgaa aacaacgtcc
     3661 tgcaagacaa caacctgccc gttatcaaac acagccccga atttatcagc aataaatcgc
     3721 ccgatacgcc gaccaaccgc atcctgactt cgctgctttg ccgcgaacgt ctttcttttc
     3781 ttctgcaaca cgggctgact tacgtcaaag caagtcaagg cttggtgcaa aaacacatca
     3841 tgcggtatcc gcagctattt gccactctcg ccattgaaaa acatttggca aacggcggca
     3901 aaaaaggcgt gatttggcac acccaaggct ctggcaaaac cgcgcttgcc tattacaaca
     3961 cccgctacct gacccactat tatgccaaac agggcatcgt gccgaaattc tatttcatcg
     4021 tggacaggct tgatttattg aaacaggcgc agcgcgaatt tactgcccgc gatttagtcg
     4081 tccataccat cgacagccgc gaagcctttg ctgccgacat caaatccgcc caaactttgc
     4141 acaaccacgc aggcaaagcg gaaatcactg ttgttaatat ccaaaaattc caagacgacc
     4201 ccgatgtcgt cgctcgtaac gactacgacc tcgccattca gcgcgtctat tttctcgacg
     4261 aagtacaccg cagctacaac cccaaaggct cgtttcttgc caacctcaac cagtccgacg
     4321 taaacgccgt caaaatcggg ctgactggca cgccgcttat cggcgtaacc gcaggcaacg
     4381 tcaacacccg cgaactcttc ggcgactaca tccacaaata ctattacaac gcctccattg
     4441 ccgacggcta caccctgcgc ctgatacgcg aagaaatcgg cagccgatac aaggcgcaat
     4501 tacaagaagc actggcgcaa cttgaaatcg aaaaaggcag ctttgaccgc aaagaaatct
     4561 acgcccatcc gcacttcgtc cacccgatgc ttgactacat cttggacgac ttcgccaaat
     4621 tcagaaaaac caaccaagac gacagcctcg gcgctatggt tgtttgcgac agcgcggaac
     4681 aggcacgtca gctttttgag cattttcaga tagcctcaga ccataatttc accgccgcgc
     4741 tgatattgca cgacgtcggc actaaggacg aacgcgacca atgggttaaa gatttcaaag
     4801 cgggcaaaat cgacatcttg tttgtgtaca acatgctttt gaccggcttt gacgcgccgc
     4861 gcctgaaaaa gctctatttg ggcagactga taaaagccca taacctttta caaaccctga
     4921 cccgcgtcaa ccgcacctac aaatcttacc gctacggcta tgttgtcgat tttgccgaca
     4981 tcgagcgcga atttgacaaa accaaccgcg cctattggga cgaactttcc aacgaattgg
     5041 gcgacgaaat cggcagctac agccggcttt tcaaaaccgc cgaagaaatc gaacaggaaa
     5101 ttgcagacat taaaaacgcc ctgtttgatt tcgataccga aaacgccgaa gaattttgca
     5161 gccaaattag ccaaatagca gacaaaaaac agctgctcgc cctaaaaaaa gccctgcaaa
     5221 ccgccaaaaa gctgtacaac gtcctgcgcc tgcaaggcag ccacgaattt ctcgcccatc
     5281 tcgattttga caagctcaat cttttgtacc gcgaaaccgc cgcgcgtttg gagaccttaa
     5341 accttgccga aaaactacag caaggcgaca ccgcccattt gctcaatgaa gcgctggaag
     5401 acgtttactt tcaattcgtt aaaatcggcg aagccgaact caaacttgcc gacgatttga
     5461 aagacatcat gcgcaaagtc cgcgaagggc tggcgggcaa cttcgatcaa gaagaccccg
     5521 aatacatcag cctgcgcgaa gaactggaac gcatcttcaa gaaaaagaac ctcgccgaag
     5581 tcgggcaaga agaaatgcag gcaaacatcg ccatactcga aaccgtctat gccaaaatca
     5641 aagagctgaa ccgccaaaac gacctcttgc ggcacaaata cggcggcgac gccaaatatg
     5701 cccgcatcca caaacgcctg cgcgaaaacc ccgccctcta cggcgataaa ctcaaagtct
     5761 ttaacgcgct gaatggtgta aaaaccgaca cggaccaaaa agtgctggat atggagcaga
     5821 ttttggacaa ccaaaattac tttgaaaaac aaatgcaggg catcgtatta aaacgcttta
     5881 gaacggaaca gcaatttccc gttcaacccg cagacatcca agccatcaac cgcctgttgg
     5941 tgcgggaata tttaaaagaa agtgggcgga tttgaggagt agattttcag gctgccttaa
     6001 ccatttataa atacaggaaa gctatgtaca acaacgacat catcatctac accacggaag
     6061 acggactatc cgaatttacc ctgcgcgagc ttgacggcga actatggctt acccaaaaag
     6121 aaattgccga actctaccaa accagcaaac aaaacatcgg taaacacatc aaagccatat
     6181 ttgcagaaca agaactggac gattcagttg taaactttca gtttacaact gctgcagacg
     6241 gcaagaacta ccgcatgggg ctttatcccc tctccctaat catcgccgtc ggctaccgcg
     6301 tccgctccac acgcggtaca caattccgcc aatgggcaac acggacattg ggcgaataca
     6361 tcagcaaggg cttcgtatta aacgacgacc gcctgaaaaa cccgcctgtc gggacaaacc
     6421 gtgccgaaga tcagtttgaa cagttgctca accgcatcag ggacatccgc agcagcgaac
     6481 ggcggatgta tctgcgtgtg cgcgaaatat tcgccatggc ggcggattac cagcccagct
     6541 tcaaagaaac cacccatttt ttcaaaatca tacaaaacaa acttcattac gcctgtaccc
     6601 gttataccgc ccctgaaatt atttaccaaa gggcagatgc ggggaaaccc aatatggggc
     6661 tgacccattg gcggggcaaa gaaatcgcca aagccgatgt aaccgttgcc aaaaattacc
     6721 tgaacgaggc agaaatcgac gccctcaacc gcatcgtttc catgtggctg gattttgccg
     6781 aagaccaggc aagcatgaaa aaacagatat tcctgcaaga ctgggcggaa aaactggatg
     6841 ccttcctcgc cttcaatgac cgccaagtct tacaaacggc agggacaatc agcaaaacgc
     6901 aggcagacga aaaagcccgc atcgaatacg aaaaatttgc cgccgcacgc agactggaaa
     6961 aagaacgcga gggcgaacgc catattgccg aactgctgaa cctgaaaaaa tagcaggcat
     7021 caatgcaggc tgcttaaaaa agtgcggtcg gattttgaaa tgttttttca gacggccttt
     7081 gaagagtttt tagagataca gttaagatga atagtgcatt aaagaatcat gcaacatata
     7141 taaataacaa agttgataca aatgaaattt cgcttagcca atatatttca acagacaata
     7201 tattgcaaaa taagcaaggt atagaatgtg caacgtcttt accaattcaa ggtggaaaag
     7261 taacttcatt taaaaagggc gatattttat tagccaatat acgaccatat ctaaaaaaaa
     7321 tttggtatgc ccaatttgat ggaggttgtt ctgctgatgt tttagcgatt cgtgctaata
     7381 cagaaacaga tagtcatttc ttattttatg ctttgtttcg tgatgatttt tttatccatg
     7441 caatgaaagg tgcaaagggt acaaagatgc cacggggcga taaaacacaa attatggaat
     7501 ttaaaattcc agtttttgac ctcaaaaccc aacaatccat agccgctgtc ctatctactt
     7561 tggacaaaaa aattgccctg aacaaacaaa tcaacgcgcg cttggaagag atggcgaaaa
     7621 ccctgtacga ctactggttc gtgcagttcg acttccctga cgccaacggc aagccctaca
     7681 aatcctcagg cggcgaaatt gtgtttgatg aaaccttgaa acgggaaatt ccgaaggggt
     7741 ggggaagtat agaattacaa tcttgcttag caaaaatccc aaatactaca aaaatattaa
     7801 ataaagatat taaggatttt ggaaaatatc ctgttgttga ccaaagtcaa gattttattt
     7861 gtggatttac caatgatgaa aaatctatat taaacccgca agatgctcat attatttttg
     7921 gtgatcatac aagaattgtt aagttagtta attttcaata tgcgcgggga gcagatggta
     7981 cacaagtaat attaagcaat aatgaacgaa tgccaaacta tttgttttac caaatcataa
     8041 atcaaataga tttatcaagt tatggatatg ctagacattt caaattctta aaagaattta
     8101 aaataatttt acctagtaaa gatatttctc aaaaatataa tgaaatagca aatactttct
     8161 ttgttaaagt tcgaaataat ataaaacaaa accaccaact aacccaactc cgcgatttcc
     8221 tacttcccat gctgatgaac gggcaggttt ctgtggcgga ataagccaaa ttcaagaatc
     8281 agacctacaa aataaaacaa acgagaaaaa aatgaccgaa caacacttta ccgaacaaac
     8341 caaatcccta atcgacagct taaaaaccat ttgcgccaac tatggtttgg gcaatgacgg
     8401 caacgagttc aaaatcatca gtcaggcatt tttgtataaa ttcctaaacg acaaatacga
     8461 tttcgaagtt aaacaaattc gcaaagaaaa tcccgacgag ccaatcgaat tcatcaatat
     8521 ggatattgag ggaaaaacag ccgttttgaa gcctgaacat tccatcaagt atttatcaga
     8581 gcgacaaaac ggcgcggact ttgccaaact ctttgacgat acgctgaccg atattgccgc
     8641 acataatgcg gaactgtttt cggtaaaaac cgaaggcggg gcgaaaatcg tgttgttcga
     8701 gcgtatcagt caatatatta cggatgaagg ccgccgcgac gatttttgcc gtgcgctgat
     8761 ttccaaactg gcgggtttta gtttcgaggc gatttttgcc caaaaatttg atttttttgc
     8821 cacgattttt gaatacctga ttaaagacta caacagtaat tcgggcggca aatacgccga
     8881 atactacacg ccgcacgcag tagcgcggat tatggcggat attttggtgc cggaggaagt
     8941 gcgcgggcaa atccgcagcg tggacgttta cgatccgtcg gccggttcgg gaacgctgtt
     9001 gatgaatgtc gcccatgcca tcggcgaaga taaatgcatg atttatacgc aggatatttc
     9061 gcaaaaatcg tccaatctgc tacggctgaa tctgattttg aataatctgg tgcattcttt
     9121 gaataatgtg gtgcagggca atacgatttt gtcgcccgcc cataaagacg cttcaggccg
     9181 tctgaaaaaa tttgatttca tcgtttcgaa tccgccgttt aaattggatt tcagcgattt
     9241 ccgcgaccaa ctagaaggcg aggaaaaccg cgaacgcttt tttgccggta tcccgaaaat
     9301 caaggcgaaa gatacggata agatggaaat ctaccagctt tttatccagc atatcttgtt
     9361 ttccctgaaa gaaaacggca aagcggcgat tgtgttgccg acgggcttta tcactgccca
     9421 atcaggcatc gacaaaaaaa tccgcgaaca tctggtagaa aacaaaatgc tcgccggtgt
     9481 ggtttccatg ccttccaata ttttcgccac cacgggaacc aacgtttcca tcctgtttat
     9541 cgataaagcc aataaagata aagtggtatt aatcgacgca tcgggcttgg gcgaaaaaat
     9601 caaagacggc aaaaaccaaa aaaccgtact ttctcgcgaa gaagaacaaa aaatctgcaa
     9661 taccttcacg cacaaacagg cagtggaaga tttcagtgtg gtaatcggct acgatgaaat
     9721 caaagcgaag aatcacagct tgtcggcggg gcagtatttc gaggtaaaga ttgattatgt
     9781 ggatatttcc gccgacgaat ttgcgcaaaa aatggcggga ttttcagcgg atttggataa
     9841 acttttcgcc gaatctgccg aattggaaaa agagattaag gatagattgg cgatgttgaa
     9901 attcaattca taaataccga tgaatgaaac cggtcaaact taaaatgccg tctgaaagcc
     9961 tttcagacgg cattttgttt ggtttggaaa atacttatgc cgttctttcc ctgaaagaga
    10021 gaatccaaaa aaccaaagcc acaggaattt atcggaaatg acaaaaaccc gacgaaccgg
    10081 attcccgcct gcgcgggaat gacgaattag aagttacccg aaatttgcaa aaacaaaatc
    10141 caacccaaca gaccgggttt tcgtttgcac ggaaataatg caataaataa agcaaatata
    10201 aagtatttga atttactata ttatttttcc gcttcttcaa agccgacgac ttccaaaccg
    10261 aagccggtca ggccggtgaa agatgagggc tgcccgagga cgcgcagttt tttgacgttg
    10321 aggccggtga ggatttgtgc gccgatgccg tagcttttgc tgtcccattt gtaggcttgg
    10381 tttgcgcctt tgggcagggt gcggtcgagc agggatgcgc cgtcttcggt gcggtgcaga
    10441 aggatgacga cgccgctttc tgcctgttgg acgcgctcga gtgctttggg cagcgaccat
    10501 gaatgacgcg ggttagcttg gatgaagtcc atgacgctga agggttcgtg gacgcggacg
    10561 agggtttcgg tgtcggcgga gggcgtgcct ttgacgaggg cgaggtgggt ttcgccggag
    10621 agtttgtcga cgtaaacgtg ttgttggaac tcgccccacg gggtttgtac aggcgcattg
    10681 cccatgtctt caagcaggct ttcggtacgg ctgcggtatt cgatgaggtc ggcaatcgtg
    10741 ccgattttga gcttgtgttc ttcggcgaat ttcatcagtt cgggcatacg cgccatcgtg
    10801 ccgtcgtcgt tgatgatttc gcaaataacg gaggcaggaa tcagcccgtt catttgcgct
    10861 aggtcgacgc cggcttcggt gtgtccggcg cggacgagta cgccgccttt ttgggcgcga
    10921 agcggaaaga tatgaccggg ttggacgatg tcttcgggtt tagcggtcgg ggaaacggcg
    10981 gtttgaatag tcagggcgcg gtcggcggcg gaaatgccgg tggtaatgcc gtgtgcggct
    11041 tcgatggaga cagtaaagtt ggtgccgtat tgcgcgccgt ttttttgggt catcatcggc
    11101 agcccgagtt tttcgaccat ttcgccgtcc atcggcaggc agaccaagcc gcgcgcgtgt
    11161 ttgatcatga agttgatggc ttcgggcgtg acgaattgcg ccgccatcag caggtcgcct
    11221 tcgttttctc ggtcttcggc atcggtgatg atgaccattt tgccggcttt gatgtcggct
    11281 aggatttcgg ggatggggga gatatgggac atggtgtgtt ttcctgtgtg ttcggacggg
    11341 cgggcggtgt gttcggtatc gagccaaaag gcgggcattt ttgccgcctg ttcgatttta
    11401 cgggcttttt tctcgccgaa ggatttgttt ttcaaaaggg cggagagttc gcctgtgttg
    11461 agggcaacgg cttcagcaaa acgagtttgc aaaccgccgt agtatttttc tatccactgc
    11521 cgcaggttgt ggcggcgcag accggctgtg tcggtcatcg tttcatcctt tgtagaaatc
    11581 ggatgtagcg gattgtaatc gcgtatttac caaaaagcaa atctgttttt ttcgccaaac
    11641 cgaatatttg ctttttggta aacagatgcc gtctgaagcc ggattcgtgg cttcagacgg
    11701 cattgccgca atccccgccg gcggggcggc tgtttcttcc cgcccgcttc cgattcgggg
    11761 tttgccggaa gcttattccg aaaaaaattt ctggtaaacg gccttgattg ccgggtacag
    11821 cataggcggt acgagcaggc gcaatatcgg caatcctatg atgaatgcgg tcttcccgat
    11881 aaaaaccgga cggattgcct tcgcgccgaa tatctttctg catttttctt taaatgaaaa
    11941 atatttccgg tagatgagga taatgttttt ggaaaaataa agccttacca atatagacct
    12001 cagatagccg atattgtcga agacaaattt ttgcaaaccg ccgtagatgg gggaattttt
    12061 gttttcgact aaaaaatcca caccccggtc gagatgcgtc agcacatcgc tgaaattttt
    12121 gtatttgatg ttgtggctga tagagccgcc gagaacgcgg tactggtaaa aagggttatc
    12181 gtaaaaggca aaagtcttga taaaacgcgc caattgcaaa ctgtacggga aatcctcgtg
    12241 aatgtatcct tttgggaaaa acagattgtt tttgatgatt atttcccgcc tgacgatttt
    12301 tgtccacgcg ttggcgatat agtaccgccc ctccaccaac gtttcaaaat ggcggacaaa
    12361 atcattatcc gaaaagtccg cccctttggg gatgacgtgg taattgaggg acgagggatg
    12421 caggatcaaa tcaacctttt tgtctgcaag ttgttgtaaa tcaaagagaa tccccccccc
    12481 cgcgtttttt gaacggttgg tatcggccca atagtcgtcg ctgtccaaaa agatcaggta
    12541 atcgcctttt gccgctcgga taccggcgtt gcgggcatcc gacagcccgc cgttttcttg
    12601 atgaatcact tttatatgcg gatatttgcc tgcatattcg tcgcaaatct tcccgcagcc
    12661 atccggcgaa ccgtcatcga ccaaaatcat ttcataatcg gcaaaatttt cggcaagcac
    12721 ggaatccacg cagcagcgga ggtatttttc cacattgtaa atagggacga tgatggagaa
    12781 aatcataaat atcaatccat tatattaaga tgtttgcgcg tatgcctcaa acccgcaccc
    12841 gcaatgcgtt tgcatccgca ccctgtaact ttataaaact tattgcttta tcaaggtatg
    12901 gaaacctgtt tcccgaaagg cggcgcagga tgcccgttcc ctgcatcttt gccttattcc
    12961 gacatcagat gccccagctt gtctgctttg gtttggaggt agcgtttgtt ttcaaggttt
    13021 tccccgacgt gcagggggat gcgttcgacc acgttaatcc ccgcatcttt cagggtttgg
    13081 attttttcgg ggttgttggt cagcagtttg accgagcgga tgcccagata ttcgtagata
    13141 gattgcgcca aacggaaatc gcgggcatcg acgggcagcc cgagtgccaa attggcttca
    13201 accgtatcca taccttggtc ttgcagatga taggcgcgga ttttgttaat cagcccgatg
    13261 ccgcgtcctt cctgacgcag atagacgatg atgccgcgcc cctctgtctg tacggccctc
    13321 atggccgctt caagttgagg tccgcagtcg cattttctcg agaacagcgc atcgcccgtc
    13381 aggcattcgg agtggatgcg cgtcagaacc ggattgccgt ctgaaaaatc accgacggtc
    13441 agcgcgacgt gttcctgccc atttgcctct tcaaagccgt gcatcgtaaa tacgccccat
    13501 tcggtcggca ggcggcagga tgccacatgg ttcaacattt cagacatctt cactcccatc
    13561 ttttccggca gacataccca acagcagttt caaaggttcg gacaaagcca aggcaagagc
    13621 cacccattcc acctgtgctg ccgtacccgc acactctgcg cattcaaatt ccacatgaac
    13681 cacgcccaac acaccgccac tttccgtgca gaccggaatg gaaatttgcg ccgccgaagc
    13741 atgattgcgt tctcccgaaa gctctcccaa atccaaccaa cgacgcacat ccgaggcaat
    13801 attcatccag ccgctttgcg ccgaacggca agccagcgaa accttgcctg ccgcttcatc
    13861 caaatcccac aggttttcca aaacctcgcc ctgccgggac aggcaaacca gccgaaaggc
    13921 ggcattttca gacggcatca gggcataaac ggctgcggcg cgcacgcctt tacagcgtga
    13981 aaacaccgaa tccaaagcca tgaaaagccg tttcagacct tcctcattcc cgctgttttg
    14041 ctccaaataa tcggcaagcc tccaatcctc atgctcaagc cacaaaaccg aacgctcaat
    14101 cgaagccgtc cccatatcca ttaccgtctg cgccgtcaga tacgccgccc gaacctcgtc
    14161 aagcggcagc ttcaaaccct gagtcagcag aaaatcctta atcaaagcag caggcatacc
    14221 caaattccgt caataaaaac aaaaaaccgc ccgattccga tgtcaggcgg acgaaaaaca
    14281 gattttaccg ccccaaaccc caagccatca acagccccgc cgaaaacctt gcacaaaaaa
    14341 acaaaatctg tataattgtc caattcccat gcggacgtgg cgaaattggt agacgcacca
    14401 gatttaggtt ctggcgccga gaggtgtgag agttcgagtc tctccgtccg caccaataat
    14461 gataaataaa tcatatagtt aatgcttatc gggacaaatt agtgccacaa aacataagtc
    14521 gtctgctttt cagcgggcgg cttttttatc tgcctatatg tttcaacacg cagaacggta
    14581 cataaagtgc cgccatttgt tccgcaccga atcggaaacg ggtgcttccg cccgcaatca
    14641 gattcactgc ccctaaatgc cggggtttca accggaaaga agaaaatatt gattttgatg
    14701 atggcatcaa aaaacccctt ccgcccgtct gccaaaagga atggttaaga aaagcaatgc
    14761 gtcttttgat ggaacgcgat atataaggaa ttgaggggaa gggcaggcgg gtttctgccc
    14821 gttaatcctg cggacggtcc cgccaaaccc gacacgcgcg ggcatatggc ggattgttta
    14881 caatattgtc taaaaatctg aacctgcaaa cgtgaaataa ggtagaatac gccccgttat
    14941 tttaccgtcc aatctccatt taccaaggaa aaacgatgag tacttcattg agttaccgcg
    15001 atgcaggtgt cgatatcgac gcaggcgacc aactggtcga aaacatcaaa ccgtttgcca
    15061 aacgcacgat gcgcccggaa gtattggggg atttgggcgg cttcggcgcg ttggtcgaaa
    15121 tcggcaagaa atataaaaat cccgtattgg tcagcggtac ggacggcgtg ggtaccaagc
    15181 tcaaacttgc ctttgattgg gataaacacg atacggtggg catcgacctt gttgcaatga
    15241 gtgtcaacga tattttggtt caaggggctg agcccttgtt tttcttggac tattttgcct
    15301 gcggtaaatt ggatgttccg cgcgcgaccg atgttattaa aggcattgcc caaggttgcg
    15361 aagaatccgg ttgcgccctg attggcgggg aaactgccga aatgccgggt atgtatcccg
    15421 tcggagaata cgatttggcg ggttttgccg tcggcgtggt ggaaaaagag aatgttatta
    15481 ccggccgcag catcggcgta ggcgatgtgg tattgggttt ggcttccaac ggcgcacatt
    15541 caaacggcta ttcccttatc cgtaaaatca tcgaacgcga caatcccgat ctggatgccg
    15601 agtttgataa tggcaaaacc ttgcgggagg ctgttattgc gccgacccgt ctgtatgtga
    15661 aaccgattct tgccgctttg gaaaaattta ccattaaagg tatggcacac attaccggcg
    15721 gcggcattac cgaaaacgtg ccgcgcgtgt tgcctgaaaa cacggttgca caaatcgatg
    15781 ctaaatcgtg ggaattgccc aagctcttcc aatggcttca aaaggcgggc aatgtggaaa
    15841 cccaagaaat gtaccgaacc tttaactgcg gcatcggcat ggtcgttatt gttgctgccg
    15901 aagatgccga tgcggttcag ggtctcttgg gtgaacaagg tgaaacagtt taccgtttag
    15961 gtttgatccg tgagcgtcag ggagacgagc atcaaaccca ggttgcctga ttgcttctat
    16021 agcgaaatgc cgtctcaaac atgggtttgg acggcatttt tatag
//
LOCUS       DAXHPV010000034        15438 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.034, whole genome shotgun sequence.
ACCESSION   DAXHPV010000034 DAXHPV010000000
VERSION     DAXHPV010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 15438)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15438)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15438
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.034"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(149..367)
                     /locus_tag="ACFM6C_000771"
     CDS             complement(149..367)
                     /locus_tag="ACFM6C_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158257.1"
                     /translation="MNEYTFSYRFNGKSWSLSIWADNPEEARAKFRAARENAHYDGEV
                     VAKVYTFVNISWVKKLYKRTKYLMGIKE"
     gene            380..550
                     /locus_tag="ACFM6C_000772"
     CDS             380..550
                     /locus_tag="ACFM6C_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YegP family protein"
                     /protein_id="HFC6158258.1"
                     /translation="MYFEIYKDAKGEYRWRLKAANHEIIAQGEGYTSKQNCQHAVDLL
                     KSTTAATPVKEV"
     gene            complement(595..900)
                     /locus_tag="ACFM6C_000773"
     CDS             complement(595..900)
                     /locus_tag="ACFM6C_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158259.1"
                     /translation="MSLLKTVKMQAAVVLTALAITACSSTTAPSATEIKVVEKAVMPT
                     PPAALMVAPVRPNPPKDGKTVTLLEHAAEFGGYVSELENQNQAWRDWAGNHSRKVGN"
     gene            complement(797..1216)
                     /locus_tag="ACFM6C_000774"
     CDS             complement(797..1216)
                     /locus_tag="ACFM6C_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158260.1"
                     /translation="MNLVKLLANNWQPIAIIALVGTLLAVSHHQGYKSAFAKQQAVID
                     KMEKDKAQALLLSAQNYARELEQARAEAKKYEVKAHAVGMALAKKQAEVSRLKTENKK
                     EIENVLTQDRKNAGGGCIDGFGHHGLQLYNRALGYGN"
     gene            complement(1188..1424)
                     /locus_tag="ACFM6C_000775"
     CDS             complement(1188..1424)
                     /locus_tag="ACFM6C_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158261.1"
                     /translation="MRILDIFKNPATGNVSHSKLWANVACAAGTVKFVMLPDPSAEIW
                     AVYLGIVGGYAVARSLVSVKRQEVENESRETAGE"
     gene            complement(1427..1564)
                     /locus_tag="ACFM6C_000776"
     CDS             complement(1427..1564)
                     /locus_tag="ACFM6C_000776"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158262.1"
                     /translation="MIELWSSKSREASEQADLAAFEFAEGELANYQEMLKRHLQTKSV
                     E"
     gene            complement(1594..1800)
                     /locus_tag="ACFM6C_000777"
     CDS             complement(1594..1800)
                     /locus_tag="ACFM6C_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158263.1"
                     /translation="MNIIGKLKEAASYFLTKLIGENPSNEQVNRALIQMPNVRPIHTY
                     PRPNLRNSGVAAAKRAARKRKNRH"
     gene            complement(1797..2342)
                     /locus_tag="ACFM6C_000778"
     CDS             complement(1797..2342)
                     /locus_tag="ACFM6C_000778"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HFC6158264.1"
                     /translation="MGKTVTLTAGHSNTDPGAVNGSDREADLAQDMRNIVAAILRDDY
                     GLTVKTDGTGKGNMPLREAVKLIRGSDVAIEFHTNAAVSKAATGIEALSTVKNKRWCQ
                     VLSKAVAKKTGWKLRGEDGFKPDNAGRHSRLAYAQAGGIVFEPFFISNDTDLALFKTT
                     KWGICRAIADAIAMELGAARV"
     gene            complement(2498..2926)
                     /locus_tag="ACFM6C_000779"
     CDS             complement(2498..2926)
                     /locus_tag="ACFM6C_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mor transcription activator family protein"
                     /protein_id="HFC6158265.1"
                     /translation="MAFEKVEHLLPDTVLDIVDVIGLAATEQLVKAIGGARFKFGKGK
                     VDTERLAILVEAIGEVKTHELLQVYGGEELYVPRCGKALIQLRNHRFYQEFVKLRDID
                     KESGLMAMTKLCPKYGISSRTGYTIINEMSRPAAQQAALF"
     gene            complement(2907..3341)
                     /locus_tag="ACFM6C_000780"
     CDS             complement(2907..3341)
                     /locus_tag="ACFM6C_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gp16 family protein"
                     /protein_id="HFC6158266.1"
                     /translation="MRRALIAKIKIAQKELGLDDGTYRAVLERVTGKRSCADMDVSEL
                     ESVVADMRSHGFKPKAKGNPHGKPHLRRTSSAAMLDKVEALLTVGGKHWNYAHAMARR
                     MFGKDKVEYLDDTQLHKLVAALQIAENRKTEKAGGDDGVRKS"
     gene            complement(3513..3695)
                     /locus_tag="ACFM6C_000781"
     CDS             complement(3513..3695)
                     /locus_tag="ACFM6C_000781"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158267.1"
                     /translation="MIAISFLIAAVLITTLWRDKDSVAIEIVKIGGAVALGYFAGINR
                     GKAQTLEKQRREKDSD"
     gene            complement(3701..3928)
                     /locus_tag="ACFM6C_000782"
     CDS             complement(3701..3928)
                     /locus_tag="ACFM6C_000782"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158268.1"
                     /translation="MSGEKSENLPADEQQKMLQEFLELQKQDIAVKQKELESRKDEIQ
                     SHERIALATIEAQKQGEQQHGEILKRYTNAV"
     gene            complement(3925..4116)
                     /locus_tag="ACFM6C_000783"
     CDS             complement(3925..4116)
                     /locus_tag="ACFM6C_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158269.1"
                     /translation="MNTVKEYTAVRERLLNAADYLEEVRKDRKTGNIASVEFVPPKIG
                     ARGYGKFKVRYKTLVAVDL"
     gene            4639..4806
                     /locus_tag="ACFM6C_000784"
     CDS             4639..4806
                     /locus_tag="ACFM6C_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158270.1"
                     /translation="MVDEKLAENRKRYEQKRVIKKVSFNAETEKELLEYAQNIDFSQW
                     VKSIIKEKIKK"
     gene            5079..5264
                     /locus_tag="ACFM6C_000785"
     CDS             5079..5264
                     /locus_tag="ACFM6C_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158271.1"
                     /translation="MPDEKTLKAKQAEYQRKYDQKRLMKTVSFHLEREKELVDFMQKE
                     IPDFSNWVKSVMKEKMK"
     gene            5465..5665
                     /locus_tag="ACFM6C_000786"
     CDS             5465..5665
                     /locus_tag="ACFM6C_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158272.1"
                     /translation="MDSIKKAQEKYALKRVVKTVSFNSEKELDLIKFSENLDFSNWVK
                     SKIRGDMESEKFKKKAKKNIDK"
     gene            5815..6405
                     /locus_tag="ACFM6C_000787"
     CDS             5815..6405
                     /locus_tag="ACFM6C_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antA/AntB antirepressor family protein"
                     /protein_id="HFC6158273.1"
                     /translation="MNTQLIPTVSGQLDNQTQALVDAHDLHKFLGVETPFSKWIQRRI
                     KEYGFTQALDFIGVDKIVRTEAGFFGQRDKTVQGYYLSLDMAKELCMVERNDKGRQAR
                     RYFIEMEKQAKALPDAVRYRIDALEDAYFQAAPEMLALLRYRSMGLNLTEIGKLLDMN
                     PGAVSYRLKKLNDLGFLEYVPKPKMVVQQQSLGLEG"
     gene            6409..6624
                     /locus_tag="ACFM6C_000788"
     CDS             6409..6624
                     /locus_tag="ACFM6C_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158274.1"
                     /translation="MNTTYTLTFDQDSLKALNLLVFTLNHLKVLEMDMEGIEDGLSAV
                     IETASEKADKLSAAFYNAVYEQEEKAA"
     gene            complement(6785..7303)
                     /locus_tag="ACFM6C_000789"
     CDS             complement(6785..7303)
                     /locus_tag="ACFM6C_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003690 - double-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0042262 - DNA protection [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="host-nuclease inhibitor Gam family protein"
                     /protein_id="HFC6158275.1"
                     /translation="MAKTRIKQPAIEAAQDKTEVTAFIRQIGDLQREVKRLETEAGDK
                     KAAIEEEYAAQAAPMCAEIMSLTERVAAYCEAHKDELTENGKTKTVDFTTGLIKWRIR
                     PPSVKVTGVAAVLAWLSEKSAFAEFVRTKKEIDKDAILNQKERFSDGQVPGIKIVSGV
                     EDFVIEPSEQIL"
     gene            complement(7413..7580)
                     /locus_tag="ACFM6C_000790"
     CDS             complement(7413..7580)
                     /locus_tag="ACFM6C_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158276.1"
                     /translation="MNEKDLIEWLEDRGELMVMKKDGEGFVIAARAPDGMWKTAEAET
                     LAQAITLWEEV"
     gene            complement(7573..7746)
                     /locus_tag="ACFM6C_000791"
     CDS             complement(7573..7746)
                     /locus_tag="ACFM6C_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158277.1"
                     /translation="MSFGRRNTDWQAWGQHRRRATARMAQKSREREIEEYQAQFEDKD
                     GKGRLKTEGNKDE"
     gene            complement(7855..8121)
                     /locus_tag="ACFM6C_000792"
     CDS             complement(7855..8121)
                     /locus_tag="ACFM6C_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158278.1"
                     /translation="MQVLKKVDWKMFVARSFWRSVPVGLTVGVWCFVAGMALHSCAKE
                     PEPVAKEPTKIEKMERQADLEVKVWEEQYESMSVEEKMKGIVYE"
     gene            complement(8211..9125)
                     /locus_tag="ACFM6C_000793"
     CDS             complement(8211..9125)
                     /locus_tag="ACFM6C_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFC6158279.1"
                     /translation="MKQINQALQQKLAEFKEKSGMSQTQLARGIDTSPASVSMYLNGT
                     YAEKGGNYETIEPKIEAFLEMQDSKAKREELVLGFVSTKTTRRIAEAMRDAHEGGEIV
                     VIYGQAGLGKTQAVKNYCEKNPAAILIEANPSFTALVLMRKLATAAKVSAMGSLNDLF
                     ESVSDRLRDSGRLIVVDEAENLPLRALEIIRRLHDETGCGLVLSGMPRLVANLRGKHG
                     ELVQLYSRVSLPLNLGESLPDDELFEIAKAALPDADEETLLELVKHSNGNTRRMSKLM
                     RGAVRTANKNGIKVQAGIVKKYSSLIIR"
     gene            9196..9273
                     /locus_tag="ACFM6C_000794"
                     /pseudo
     CDS             9196..9273
                     /locus_tag="ACFM6C_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687326.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
     gene            complement(9340..11328)
                     /locus_tag="ACFM6C_000795"
     CDS             complement(9340..11328)
                     /locus_tag="ACFM6C_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu transposase C-terminal domain-containing
                     protein"
                     /protein_id="HFC6158280.1"
                     /translation="MGITIGELLKLNIQGLPTTARGLRERAKTQNWPYIEEVGKARGG
                     RLKKYLIASLPAEIRAAIMKRQSDELTEKMPKTLPQVRPGTAMSAQALAEAAKLLNEK
                     QRSVADARCAVVAAVLGIKYQYGCSAKAAVAQFLGLLAESKLDAVTLGNLEKANDRSR
                     SAKVGERTLDGWISAYLKAENATERLVALAPKTTKAVKPIESYGWLPMFMQFHNIPSA
                     PKLAHSYRRFVQWAEAENMPVNDVPSLSMVRRVWDKLPLIMQERGRKTGAAYKSLLPY
                     VKRDWGALKPNDVWIGDGHSFKAKVAHPVHGRPFKPEVTVIIDGCTRFVVGFSVSLAE
                     SCVAVSDALRIGVKHFGLPIIYYSDNGGGQTGKTIDHEITGITSRLGIRHETGIAGNP
                     QGRGIIERWWKDNLIEMARQYETFAGAGMDSSTKNLMYRKMESAFNALEKGKDLTEEQ
                     QKYLKKLPGWSRFIADVVKCIDEYNNRPHGELPRHPDGGHYSPKAYREMRLEQDGIAP
                     DMLSAEELATMFMPQEVRKVQRGWLDLFNNSYFSTELAEYHKDEVRVSYDLSDASAVN
                     VFDMDGKFITKAQANGNTREAFPTARIDQLAEKRRKGKIKRAENAIKLANAEVNPALE
                     QAAVWDELGHLGGNVIEAEYAVLPRTDTDDFVLFEADR"
     gene            complement(11339..11527)
                     /locus_tag="ACFM6C_000796"
     CDS             complement(11339..11527)
                     /locus_tag="ACFM6C_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HFC6158281.1"
                     /translation="MGIKTVNEVREWLKDNNLTVAQWARENGHNSVDVTRVLTGKSKC
                     RYGQGRAIAIKLGLRIDE"
     gene            11647..12009
                     /locus_tag="ACFM6C_000797"
     CDS             11647..12009
                     /locus_tag="ACFM6C_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003741237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6158282.1"
                     /translation="MDNSFELSSKLLGERLKKIRTDNGYSREQLSELFGISRASIQNY
                     ENGERSPNADYLVQFYKHFGINLHWLLTGNKAAKFQDFIDSVSSPREEVLLHLARQMD
                     SRTLNHLIDFLMDVYAKK"
     gene            12186..12725
                     /locus_tag="ACFM6C_000798"
     CDS             12186..12725
                     /locus_tag="ACFM6C_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003741234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6158283.1"
                     /translation="MLTGKGLPYLDKARLENAGAFSVSRNSDGITDTMGNPVDLSEFV
                     FVPRYNVAAAAGYGAPVFGEEPLFCLAFRKYWIDNYVTKQPEKLSVITVKGDSMEGVL
                     NHGDSILINHAKTDPRDGLYVLRIGNDLFVKRVQRIPGKLLVTSENPRYAPFEIDFSN
                     AQDDIAIIGRVEWYGRSID"
     gene            12934..13524
                     /locus_tag="ACFM6C_000799"
                     /pseudo
     CDS             12934..13524
                     /locus_tag="ACFM6C_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707572.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
     gene            13629..14297
                     /gene="hda"
                     /locus_tag="ACFM6C_000800"
     CDS             13629..14297
                     /gene="hda"
                     /locus_tag="ACFM6C_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA regulatory inactivator Hda"
                     /protein_id="HFC6158284.1"
                     /translation="MNQLIFDFAAHDYPSFDKFLGTENAELVYVLRHKHGQFIYVWGE
                     EGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVEKLGNEEQAL
                     LFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALA
                     SMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQ
                     QETQ"
     gene            14294..14962
                     /locus_tag="ACFM6C_000801"
     CDS             14294..14962
                     /locus_tag="ACFM6C_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFC6158285.1"
                     /translation="MKNLAIFDLDNTLINTDSDHAWPQYLIKKGLVDAAETEAQNEKF
                     YRDYQNGCLDIDAFLKFHLAPLARYSKEELAEFHREFMAEYIIPHISPMQRMLVQSHQ
                     MAGDETLVISSTNEFIITPVCRLFGITNIIGTQLESGSDGRYTGNYIGTPSLKEGKIT
                     RLNQWLAERGETLESYGKTYFYSDSKNDLPLLRLVDEPVAVNPDAELEKEAKEKGWPV
                     LNFK"
BASE COUNT         3931 a         4208 c         3291 g         4008 t
ORIGIN      
        1 ggtccaactt caatagtggg aagcggtcga tgtgtttagc aatcatggct tgtgcggttt
       61 gccggaagaa ggtgctcatg agaaatctcc taaatgtctt ggtgggaatt taggggattt
      121 tggggaattt tgcaaaggtc tcggtaggtc attctttgat acccattaaa tattttgtcc
      181 gcttgtacaa tttcttaacc cacgaaatat ttacaaatgt ataaaccttt gctacaactt
      241 cgccgtcata gtgcgcattt tctcgtgcag cccgaaattt cgccctggct tcttcagggt
      301 tgtccgccca aatgctcaat gaccaggact tgccgttaaa gcggtaagaa aacgtgtact
      361 cattcatagg agaaacctta tgtattttga aatctataaa gacgcaaaag gcgaataccg
      421 ttggcgtttg aaagcagcca accatgaaat catcgctcag ggcgaaggct acaccagcaa
      481 gcaaaactgt cagcacgcag tcgatttgct gaaaagcact accgccgcta cccctgtaaa
      541 agaggtataa aatccgcttt caccctcagc ccgcgcccta cgcgggcttt tttgtcagtt
      601 tccgactttg cgggagtgat tgcccgccca gtcgcgccaa gcctgatttt ggttctccag
      661 ttccgaaaca tagccgccaa actcagcggc gtgttccaac agcgttactg tcttgccgtc
      721 tttcggcgga ttcgggcgta ccggcgcaac catcaatgcg gcaggcggtg tcggcatgac
      781 cgccttttcg acaaccttaa tttccgtagc cgagggcgcg gttgtagagc tgcaagccgt
      841 gatggccaaa gccgtcaata caaccgccgc ctgcattttt acggtcttga gtaaggacat
      901 tttcgatttc ctttttattt tccgttttca gacggctgac ttccgcctgt tttttcgcca
      961 aagccatgcc gacagcgtgc gccttgactt catatttttt agcttccgca cgcgcctgtt
     1021 ccagctcgcg ggcgtagttt tgagccgaca acagcagggc ttgcgctttg tctttttcca
     1081 tcttgtcaat gaccgcctgc tgcttcgcaa aagccgactt gtagccttga tggtgcgaca
     1141 ccgccaagag agtgccgaca agcgcgatga tggcaatcgg ttgccagtta ttcgccagca
     1201 gtttcacgag attcattctc gacctcctga cgtttgacgc tgaccaacga acgcgccacc
     1261 gcatagccgc cgacaatgcc caaatacacc gcccaaatct ccgccgacgg gtcgggcagc
     1321 atcacaaact taaccgtccc cgccgcgcag gcaacgtttg cccacagttt cgagtgcgac
     1381 acattgcctg tcgccgggtt tttaaaaata tccaaaatac gcattgctat tccacacttt
     1441 tggtttgcag gtgccgtttc agcatttcct gataattggc cagttcgccc tccgcaaatt
     1501 cgaacgcagc caagtctgcc tgttcgcttg cctcgcggct tttgctcgac catagctcaa
     1561 tcatcttttc gtaaaacgca acctgtccca tgattaatga cgattcttgc gtttgcgcgc
     1621 cgcacgtttc gcggctgcca cgcctgagtt tcttaaattt gggcgtggat aggtgtgtat
     1681 cggacgaaca tttggcatct gtataagtgc gcggtttacc tgctcattac taggattttc
     1741 tccaatcaat tttgtaagaa aataggaagc agcttctttc aatttaccaa taatattcat
     1801 actcttgccg cccccaattc catcgcaatc gcgtccgcaa tcgcgcggca gatgccccat
     1861 ttggtcgtct taaacaaggc caaatcagtg tcgttgctga taaaaaacgg ctcaaacaca
     1921 atgccgccgg cttgcgcata agccaggcgc gaatgccgac ccgcattgtc gggtttaaag
     1981 ccgtcttcgc cgcgcagttt ccagccggtt ttcttggcaa cggctttgct caacacctga
     2041 caccagcgtt tgtttttaac ggtactcaag gcttcgatgc ctgtcgccgc tttgctgacg
     2101 gcagcgttgg tgtgaaactc aatcgccaca tccgagccgc gaatcagttt tacggcttca
     2161 cgcagcggca tattgccttt gcctgtgccg tcggttttaa cagtcaaacc gtagtcatcg
     2221 cgcaaaatag cagccacgat attgcgcata tcctgcgcca agtccgcctc acggtcgctg
     2281 ccgttgaccg cacccgggtc ggtgttgctg tgtccagcgg ttaaggttac ggttttgccc
     2341 attcatcatc tccaaaaaag gttgattgca taacatttga aaaccccatt aaaccgtctt
     2401 taacccatcg tcccgaacgg tagatgtttc atcccctgca aaccaaaaaa aagaccgtct
     2461 gaatacagac ggccaaagcc tggtcacaca tcactgccta aaataaagct gcctgctgtg
     2521 ccgcaggtcg gctcatttca ttgataatcg tatatcccgt tcgtgaagag atgccgtatt
     2581 tagggcatag cttcgtcatc gccataagcc cgctctcctt atcaatatcg cgcaatttga
     2641 caaactcctg ataaaaccta tggtttctca actgtattaa cgccttgccg caccgtggga
     2701 catacaattc ctcgccacca tatacctgca acagctcatg tgttttcact tcgccgatgg
     2761 cttcgaccaa aattgccaaa cgctcggtgt ccaccttgcc cttaccaaat ttaaaccgcg
     2821 ccccgccaat cgccttgacc agctgttccg tcgctgccag tccgatgaca tccacaatgt
     2881 ccaacacggt atccggcaat aaatgttcaa ctttttcgaa cgccatcatc cccacccgct
     2941 ttttccgttt tcctgttttc cgcaatctgc aacgcagcaa ccagtttatg tagctgcgta
     3001 tcgtctaaat attcgacctt atccttacca aacatccgcc gcgccattgc gtgtgcatag
     3061 ttccaatgtt tgccgccgac ggtcagcagg gcttcgactt tgtccaacat tgccgctgat
     3121 gatgtccgac gcagatgtgg tttaccgtgt gggttacctt ttgctttagg cttaaatccg
     3181 tgcgaccgca tatcagcgac aacagactca agttcggaaa catccatatc cgcacacgac
     3241 cgcttgcccg tcacgcgctc caacaccgcg cgataggtac cgtcgtccaa gcccagctcc
     3301 ttttgggcaa ttttaatttt tgcaatcaac gcccggcgca ttatctctcc aatacaacat
     3361 atagtataaa ttagcgcata ttataccaat aaaatataat atatagtatt aagccgatgt
     3421 tttttgcgaa acggacagac atgaaaaagg ccgtctgaaa acgagctttg cgagtttcgc
     3481 caaaacgttt cagacgacct ttttactaca atctaatcac tgtctttttc gcgccgttgc
     3541 ttttccaagg tttgcgcttt acctctgttg attcctgcaa aatatcccaa agctaccgcc
     3601 ccgccgattt tgacaatttc aatagcgacg ctgtccttat cgcgccataa cgtagtaatc
     3661 agcacggcgg caatcagaaa agaaatagca atcacggcat tcagacggcg tttgtgtacc
     3721 tctttaaaat ctcaccatgt tgctgttcac cctgtttttg cgcttcgatg gtagccagtg
     3781 caatgcgttc gtgagattgg atttcgtcct tacggctttc caactccttc tgtttgactg
     3841 caatatcttg tttttgaagt tctaaaaact cctgaagcat tttctgctgc tcatcggccg
     3901 gcagattctc ggatttttcc ccgctcataa atcaaccgcc actaaggttt tgtaacggac
     3961 tttgaatttg ccgtaacccc gagcccctat tttcggcggc acaaattcca cggacgcaat
     4021 attgcccgtc ttacggtctt tacggacttc ttccaaataa tcggcagcat tgagcagccg
     4081 ttcgcggact gccgtatatt ctttgacggt attcattttt caacctcgcc caaatagtgc
     4141 aaatattagc atatgggatt tatttttcaa gaaaatcaaa tccatataaa acaaccgtat
     4201 aatattttaa tactatatat ggtaaatttc ttctaaaaat acacactaaa ataccatatc
     4261 ttgataaccg taacgccgca caaatggcag ggcattgatg cccgacaaca aaaaatgccg
     4321 tctgaaacag cattcgagct gttttcagac ggcatttttc tttgattttg ttggggaaag
     4381 ggttgacttt taacgtgtcc acgtttataa ttcaattcat cggcgtagtg agggccgata
     4441 cgggaaaagc cccaccgaag cggggctcaa ctgggagaaa gaagatgaat aaacgcacta
     4501 ttcaaattct catcttggtc gcagttttca tgttggcaag tgctaatgcc tactaaagac
     4561 tgaccagctg ggggcggtcg ccgctgtccc cagtcccaat cttacaaaat acggtttaaa
     4621 aaatcaagga gtttgcctat ggttgatgaa aaactggcag aaaaccgaaa gcgttacgag
     4681 cagaaacggg tgattaagaa agtctcgttc aatgccgaaa cggaaaaaga acttttggaa
     4741 tatgcccaaa atatcgattt ttcccaatgg gttaaatcaa tcatcaaaga aaaaatcaaa
     4801 aaatagcttg actaaattct agaaatacta gataatacgc ctatctgata aagcaaagcc
     4861 ccgaagcggc aacttcgggg gcttatcgga tagaaaggag gcttgtggaa atgacaaaac
     4921 tggcgaaagt tgtttttttc atcattctgc ttttaagctg tagtccggct tactaagcaa
     4981 gttgattaaa cacaaggggt ggcagaacac cgcgcccctt tcgccaacct ttctgcaagc
     5041 cattttacta caacgatttt aaaaatcaag gattgcctat gcctgatgaa aaaacgctaa
     5101 aagcaaaaca agctgaatat cagcgaaagt atgaccaaaa gcggctgatg aaaacagttt
     5161 ctttccattt ggaaagagag aaagagttgg tggattttat gcaaaaagaa attcccgact
     5221 tttcaaactg ggttaaatca gtcatgaagg aaaaaatgaa ataagaaaat tccgccgatg
     5281 ggaaaacatc ggcggaacag gtggaaagca gagcagcaac tctctttatg tagggcatga
     5341 aaaaaggccg tctgaaacag gttttaaacc ccatttcaga cggctttttg ttgtaataca
     5401 tcttgattaa aatggttttt agtattacca taatcgtgtt ttaaaaccta tttaaaggaa
     5461 gattatggac tcgattaaaa aggctcaaga aaaatacgca ctcaagcgag tagtgaaaac
     5521 agtatcgttc aattccgaaa aagaacttga tttaattaaa ttttctgaaa atttagattt
     5581 ttcaaactgg gtaaaatcga aaattagagg agatatggaa tcggaaaaat tcaaaaaaaa
     5641 agcaaaaaag aatattgaca aatagaatta ccataattta aaatttccat atcttgtgca
     5701 acacaagata tggaaatccc cgataagtga cagcttatcg gggatagtgg aaaagcaacg
     5761 ttagagcgtt cttttccttg tcatctcaac cttgaaatga aagataattt taccatgaat
     5821 acccaactca tcccaactgt ttcaggtcaa ttggacaatc aaacacaagc actggttgat
     5881 gctcatgacc tgcataagtt cttaggtgtg gaaacaccat tttctaaatg gattcagcgt
     5941 cgcattaaag aatacggatt tacacaagcc cttgatttta tcggcgtgga caaaattgtc
     6001 cgcaccgaag caggtttctt tggacagcgt gataaaactg ttcaggggta ttatttatcc
     6061 ctcgacatgg caaaagagct gtgcatggtg gagcgcaacg acaaaggacg ccaagcccgc
     6121 cgatatttta tcgaaatgga gaaacaggca aaagccctgc ctgatgccgt gcgataccgc
     6181 atcgatgcat tggaagacgc ctatttccaa gccgcgcccg aaatgctcgc gctgctgcgc
     6241 taccgcagta tgggcttgaa cctgaccgaa ataggcaaac tcttggacat gaaccccggc
     6301 gcggtttcct accgtctcaa aaaactcaac gatttgggtt tcttggaata tgtccccaag
     6361 cccaaaatgg tggtgcaaca acagtctttg ggattggagg gttaagccat gaataccacc
     6421 tataccctga ctttcgacca agacagcctc aaagccctga atctgctggt gttcacactc
     6481 aaccatctga aagttttgga gatggacatg gaaggaatcg aagacggttt gtctgccgtg
     6541 attgaaaccg cctccgagaa agccgacaag ctgtccgccg ctttctacaa cgccgtgtac
     6601 gagcaggaag agaaagcagc ctgaatctag ggcatgaaaa aaggccgtct gaaacaggtt
     6661 ttaaaccccg tttcagacga cctttaaatc atgggttaaa gcctatttga accggctagg
     6721 caagctcctg ctccgtaggc tcaatcacgt ttcaacacac tgaattgaaa tcaggctgtt
     6781 gattttatag aatttgttcg ctcggctcaa tcacaaaatc ctccacgccg ctcacaatct
     6841 taatccccgg cacttggccg tctgaaaaac gctctttttg attcaggatg gcgtctttgt
     6901 cgatttcctt tttagtgcgg acaaactcgg caaaggcgga tttttccgag agccacgcca
     6961 agacggcggc cacgcccgtt accttgacgg atggcggacg gatgcgccat ttaatcaggc
     7021 cggtagtaaa gtccacggtt ttggttttac cgttttccgt cagctcgtcc ttatgtgcct
     7081 cgcagtatgc ggccacacgt tcggtcaggc tcatgatttc ggcacacatc ggcgcggctt
     7141 gggcggcata ttcttcttcg atggccgctt ttttgtctcc ggcttcggtt tccaggcgtt
     7201 tgacttcgcg ctgcaagtcg ccgatttggc ggataaatgc agtaacttcc gttttgtctt
     7261 gtgccgcttc gatggcgggc tgtttgattc gggttttagc cattttctct tcctttcagg
     7321 ttgggtttaa catttcggct tactcaagcc ttgttcgcgt tcgtgcttgg caagtgcttc
     7381 aactttcgcg cggtttctca aaaacttaaa catcacactt cctcccataa agttatcgcc
     7441 tgagccaaag tttccgcctc ggcagtcttc cacatcccgt ccggcgcacg cgctgcaatc
     7501 acaaagcctt cgccgtcctt cttcatgacc atcagctcgc cacggtcttc gagccattcg
     7561 attaaatctt tttcattcat ctttgtttcc ttccgttttc agacgacctt tgccgtcctt
     7621 atcttcaaac tgcgcctgat attcctcgat ttcgcgctcc cggctttttt gcgccattcg
     7681 cgccgtcgca cgcctgcggt gttgtcccca agcctgccaa tccgtattac gtcgtccgaa
     7741 actcatttca cacatccttt cacaatcgcc ttatcgccat atttcgcatg gatttccttt
     7801 accgcccgat ccaaagcctc ttttttcgcc gcagggctca ataaaattgg tttatcactc
     7861 ataaacaatc cctttcattt tttcctcgac gctcattgac tcgtattgct cttcccatac
     7921 cttgacctcc aaatctgcct gtctttccat cttctcgatc ttcgtcggct ctttcgcaac
     7981 cggttcgggt tctttcgcgc aggaatgcaa cgccattccc gccacaaaac accacacgcc
     8041 caccgtcaaa ccaaccggca cactccgcca aaaagagcgt gccacaaaca tcttccaatc
     8101 aactttcttc aaaacttgca ttttgcgttt tcctttagaa aacagtaact tattaaaatc
     8161 atagggtaaa aaatatatag ccctgtcaga gacttaccgt ttcagacggc ctatcggata
     8221 atcagggagc tgtatttctt aacgataccg gcctgcacct tgataccgtt cttgttcgcc
     8281 gtgcgtaccg cgccgcgcat caatttgctc atccggcgcg tattgccgtt actatgttta
     8341 accagttcca agagcgtttc ttcgtccgca tcaggcaaag ccgctttcgc aatctcaaag
     8401 agttcgtcat ccggcaaaga ttcgcccaaa ttcagcggaa gcgacacgcg gctgtaaagc
     8461 tgtaccagct cgccgtgctt gccgcgcaaa ttcgcaacca gtcggggcat accgctcaac
     8521 accaaaccgc agccagtctc atcgtgcagt cggcggataa tctcaagggc gcgtaacggc
     8581 aggttttccg cttcatcgac cacaatcaga cggcccgaat cacgcaggcg gtcagataca
     8641 gactcaaaca aatcattcag gctgcccatc gccgacacct tcgccgccgt cgccaacttg
     8701 cgcatcagga ccaaagccgt aaagctcgga ttagcctcaa tcaagatggc cgcagggttt
     8761 ttctcgcagt agtttttgac cgcctgagtc ttgcccaaac cggcctgacc gtagatcacc
     8821 actatttcgc cgccttcgtg cgcatcgcgc atcgcttccg cgattcggcg tgtcgtctta
     8881 gtcgatacaa aacccaacac cagctcttcg cgtttcgctt tactgtcctg catctccaaa
     8941 aacgcctcga ttttcggctc gatggtttca taattgccgc ctttttccgc ataagtgcca
     9001 ttcagataca tactgacgga tgccggcgaa gtatcgatac cgcgtgccag ttgggtttgg
     9061 ctcatacccg atttttcttt aaattcagcc agtttttgtt gcaatgcttg attgatttgt
     9121 ttcattttta atatccttga gttttaaaca acctttaaag gccgtctgaa atgaaagagt
     9181 ttcccgattt agaaatttga gcctgattcc gttcagcggg aacaccttga atctttactt
     9241 gaaatcgttg aatccgccca agggcccgct tgagtttcaa tttttcaaca agctcggtcg
     9301 aaaacgccgc atttttctgt ttgtccatca tgttttcctt tatctatccg cctcaaatag
     9361 cacaaaatcg tccgtgtccg ttctcggcaa taccgcatac tccgcctcga tgacgtttcc
     9421 gcccaaatgt cccagctcgt cccaaaccgc agcctgttcc agagccggat tgacttccgc
     9481 gtttgcgagc ttgattgcat tttccgcccg cttgattttg ccttttcggc gtttttccgc
     9541 cagttggtcg atacgcgccg tcgggaaagc ctcgcgggta ttgccgttgg cctgcgcctt
     9601 agtaataaac ttgccgtcca tatcaaacac attgaccgcc gacgcatcgc tcaaatcgta
     9661 gctgacccgt acctcgtcct tgtgatactc cgccagctca gttgagaaat aagagttgtt
     9721 gaacaaatcc agccaaccgc gctgtacctt tcgcacctct tgcggcataa acatcgtcgc
     9781 cagctcttcc gccgacaaca tatccggcgc gataccgtcc tgttccagcc tcatttcccg
     9841 ataagccttc ggcgaataat gcccgccgtc cggatgtcgg ggcagctcgc cgtgcgggcg
     9901 gttgttgtat tcgtcgatac acttgaccac atccgcgata aaacgcgacc agcccggcag
     9961 ttttttcaaa tatttctgtt gttcctccgt caaatccttg cctttttcca aagcgttaaa
    10021 cgcactttcc atcttgcggt acatcaggtt cttggtactg ctgtccatcc ccgcgcccgc
    10081 aaacgtctca tactgtcgcg ccatctcaat cagattgtct ttccaccatc gctcgatgat
    10141 gcctcggcct tgcgggttgc ccgcgatacc cgtttcatgc cggataccca atcgggacgt
    10201 aatacccgtg atttcatggt ctatcgtctt gccggtttgg ccgccaccgt tatccgagta
    10261 gtagataatc ggcaaaccaa agtgcttgac cccgatacgc agagcgtccg ataccgccac
    10321 acaactttca gccaacgaga ccgaaaaccc gaccacaaac cgcgtacaac catcaataat
    10381 caccgtcact tccggcttaa acggcctgcc atgtaccgga tgcgccacct ttgccttaaa
    10441 gctatggccg tcgccgatcc aaacatcgtt cggcttcaaa gccccccaat cacgtttcac
    10501 ataaggcagc agcgatttat aagccgcccc cgttttcctg ccgcgctcct gcataatcag
    10561 cgggagcttg tcccaaacgc gccgcaccat actcaagcta ggcacatcat tgaccggcat
    10621 attttccgct tccgcccact gcacaaaccg gcggtagctg tgtgccagtt tcggcgcgga
    10681 cgggatattg tgaaactgca taaacatcgg caaccaaccg tagctctcaa tcggcttgac
    10741 cgccttcgtc gtcttcggag ccaaagcaac caaccgctcc gtcgcgtttt ccgctttcaa
    10801 ataagcagaa atccagccgt ctaaagtacg ttcgccaacc ttcgccgacc ggctgcggtc
    10861 attggccttt tccaagttcc caagcgtgac cgcgtccaat ttactttctg ccagcaagcc
    10921 caaaaactga gccaccgcag cctttgcaga gcaaccgtat tggtatttaa tccccaatac
    10981 cgccgccacc accgcacatc gcgcatccgc caccgaccgt tgtttctcgt tcaacagctt
    11041 ggccgcttca gccagtgcct gagccgacat cgccgtcccc ggtctgactt ggggcaaggt
    11101 tttcggcatc ttctccgtca gctcgtccga ctgccgtttc atgatggctg ctcggatttc
    11161 ggcagggagg gaagcgatta agtatttttt cagacggcct ccacgcgctt tgccaacctc
    11221 ttcgatgtac ggccagttct gggtttttgc tctctccctt aatcctcttg ctgttgtagg
    11281 aagcccttga atattaagtt taagcagctc accaatcgtt atccccatct tcgtttcctc
    11341 actcgtcaat tcttaacccc agcttaatcg cgatagcgcg cccctgaccg tatcgacact
    11401 ttgatttccc cgtcaacaca cgagtaacat ctacggagtt gtgtccgttt tctctcgccc
    11461 attgcgcaac tgttaaatta ttgtctttta accattctct aacttcattt actgttttaa
    11521 ttcccatttt tttacctttc ttggtttgtt caaatcctgt ataattacta caaaactagc
    11581 tgttttgcta catttgtagc aatattatta gctacaaatg tagctgtcaa gaaaaaagga
    11641 acttttatgg ataattcttt tgaattaagc tctaagttat tgggtgagcg actaaaaaaa
    11701 atcagaacag ataatggata ctcaagagag cagttgagtg agttatttgg catcagtagg
    11761 gcaagtattc aaaattatga gaatggggaa agaagtccga atgccgatta cttagttcag
    11821 ttttataagc actttggaat taatttgcat tggctgctaa ctggaaataa ggctgccaaa
    11881 ttccaagatt tcattgattc tgtttcttct ccgagagaag aagtactact acacttggct
    11941 cgccaaatgg atagtcgcac cttgaatcac ttgattgact ttctaatgga tgtttatgct
    12001 aaaaaataaa cagcactaag gaaaactcag cttttaagtt ccttccttag tgaacagtcg
    12061 cctaaataga gaaatttttt ttaaattttg attttgaaat gaaaaataca aaggaaggct
    12121 tctaaacctc ttcctttgta ttttcctttg tcttgcaaga atctacaggc tgagatttaa
    12181 actggctgct gaccggcaaa ggcttaccgt atcttgataa agccaggctg gaaaacgctg
    12241 gagcattctc tgtaagcaga aattctgatg gaattactga cactatgggc aaccctgtcg
    12301 acttgtcaga gtttgtattt gtgccgcgct acaacgtagc cgcagcagca gggtatggcg
    12361 caccggtctt cggcgaagag cctttgttct gcttggcttt ccggaaatat tggattgaca
    12421 actatgtgac caaacagccg gaaaaactgt ctgtaattac cgttaaaggc gattcaatgg
    12481 agggcgtgct caatcatggg gattccattc tcatcaatca cgccaaaacc gacccgcgtg
    12541 acggcctata tgtcttgcgt ataggcaatg acctctttgt caaacgtgtg caacgcatac
    12601 cgggcaaact gcttgtaacg tctgaaaatc cacgttacgc accgtttgaa atagatttta
    12661 gcaatgccca agacgacatc gccatcatag gccgtgttga gtggtatggc cggagtattg
    12721 attaaatcca ttttaaaaac ctcttaaaac agttttaaaa attccctaat ctcgtcagct
    12781 ttaaacagaa aaccgcgcat tccggcgcgg ttttgtgaaa aagctggcgt aacttttccg
    12841 gatacaaaaa aacgccgaaa tccacgtctt tccgagattt cagcgttttt tactctattt
    12901 gttccttgtg caaaaactaa cagtccccca caggaaaacg tcgctctgtt ccgccacaac
    12961 ggcgaaatcc tgttgagcgg catcaacatc aaactcaaaa gcggcgattc cctgctgata
    13021 cgcggcccga gcggttgcgg caaaacttcg ttgctgcgcg cgctggctgg gctttggccg
    13081 ttcggcagca gcggcaaagt cagccgtccg ccgcatcaag acatcctctt cctgccgcaa
    13141 cgcccgtaca cggcacaggg cagcctgcgc gacgcggttt gttatcccga catcgacaaa
    13201 cagcatccgg agctaatcga agccatgaac acctgccgct tgggttatct ggttgataaa
    13261 ttagataaaa ccgacgactg gcaacacaaa ctctccccgg gcgaactgca acgcgtcgcc
    13321 ttcgtccgcg ccctgctttc caagcccaaa atcgtcctgc tcgacgaagc caccgccgcc
    13381 ttggacgaac cggccgaagc cgcgctctac cgcgccttaa agcaaaaact gcccgacagc
    13441 atcatcatca gcatcggaca ccgaagcacg ctcaacgcgt tccacaatat gcgcctcgat
    13501 gtcggcaacg ttgcctgcgg ttgaacgatg ccgtctgaag ccgttttcag acggcatcgt
    13561 tcaaattgga aaggcgcgcg aaaacaacgt acaataaacc cgtttaccac ccctcggaat
    13621 gccgaaccgt gaaccagctt attttcgact ttgccgcaca cgactatccg agtttcgaca
    13681 aattcctcgg cacggaaaac gcggaactgg tctatgtcct ccgacacaaa cacggacagt
    13741 ttatctatgt ctggggtgaa gaaggcgcgg gcaaaagcca tcttttgcag gcgtgggtcg
    13801 cacaggcgct cgaagccggc aaaaacgccg cctatatcga tgccgcctcc atgccgctga
    13861 ccgatgccgc gttcgaggcg gaatacctcg ccgtcgatca agtcgaaaaa ctgggcaacg
    13921 aagaacaagc cctgcttttt tccatcttca accgcttccg caacagcggc aaaggctttt
    13981 tgctgctcgg ttcggaatac acgccccagc agcttgtcat ccgcgaagat ttgcggacgc
    14041 gtatggcgta ctgcctcgtt tacgaagtca aacccttaac cgaccaagaa aaaatcgacg
    14101 cgctcgccag tatggcggcg gcacgccaag taaccgtcga ttccgaaatt ttcgaatacc
    14161 tgctcaaaca ctggcggcgc gatatggaca gcctgatgat gatgctcgac acgctggaca
    14221 actacgccgt cacaatgggc aaacgcatca ccctgccgct tttgcgccag cttttgaaac
    14281 aacaggaaac ccaatgaaaa acctcgccat cttcgacctc gacaacaccc tcatcaacac
    14341 cgattccgac cacgcctggc cgcaatacct catcaaaaaa ggcttggttg acgctgccga
    14401 aaccgaagcg caaaacgaaa aattctaccg cgactaccaa aacggctgcc tcgacatcga
    14461 cgcattcctc aaattccacc tcgccccgct cgcccgttac agcaaagaag agctggcgga
    14521 atttcaccgc gaatttatgg cggaatacat catcccccac atctcgccta tgcagcgtat
    14581 gctggtgcag agccaccaaa tggcaggcga cgaaaccctc gtcatctcat cgaccaacga
    14641 gttcatcatc acccccgtct gccgcctttt cggcattacc aacatcatcg gcacacaact
    14701 cgaatccggt tccgacggcc gctacaccgg caattacatc ggcacgccca gcctcaaaga
    14761 aggtaaaatc acccgcctga accaatggct cgccgaacgc ggcgaaacgc tcgaaagcta
    14821 cggcaaaacc tatttttaca gcgactccaa aaacgacctg ccgctgctgc gcctcgtcga
    14881 cgaacccgtc gccgtcaacc ccgatgccga gctggaaaaa gaagccaaag aaaaaggctg
    14941 gccggttttg aatttcaaat gacgcaatgc cgtctgaagc ccgattcggc gttcagacgg
    15001 cattgaggct gaaatccaaa aaactcaaag ccacaggaat ttatccggaa aaacaaaaaa
    15061 cacaggaatt catcgggaaa aacaacaatc tttccaccgt cattcccacg aaagtgggaa
    15121 tcttgatccg tccgcacgga aacttatatt tcgtcatttg cacccgacat aattcaatac
    15181 tttattttgc aataaattaa cggatgctga caaattagat tggattaatt accctattat
    15241 ccatattggg ttatcgggtt gctaattgag cagagcgtag caaaccataa agtgagtgtt
    15301 tccacccact ctgcatttat agtggattaa aatttatagt ggattaaatt taaatcagga
    15361 caaggcgaca aagccgcaga cagtacagat agtacggcaa ggcgaggcaa cgctgtactg
    15421 gtttaaattt aatccact
//
LOCUS       DAXHPV010000035        15401 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.035, whole genome shotgun sequence.
ACCESSION   DAXHPV010000035 DAXHPV010000000
VERSION     DAXHPV010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 15401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15401
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.035"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(104..1888)
                     /gene="lpdA"
                     /locus_tag="ACFM6C_000802"
     CDS             complement(104..1888)
                     /gene="lpdA"
                     /locus_tag="ACFM6C_000802"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HFC6158286.1"
                     /translation="MALVELKVPDIGGHENVDIIAVEVNVGDTIAVDDTLITLETDKA
                     TMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEGTAAAPKAEAAAAPAQEAPKAAA
                     PAPQAAQFGGSADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVG
                     CIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKS
                     RKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAATTGEKKIVAFKNCIIAAGSRVTKLPF
                     IPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG
                     ADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVA
                     AGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEG
                     HVAAENCAGYKAYFDARVIPGVAYTSPEVAWVGETELSAKASGRKITKANFPWAASGR
                     AIANGCDNGFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHP
                     HPTLGESIGMAAEVALGTCTDLPPQKKK"
     gene            complement(1906..2343)
                     /locus_tag="ACFM6C_000803"
     CDS             complement(1906..2343)
                     /locus_tag="ACFM6C_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158287.1"
                     /translation="MGNFLYRGISCQQDEQNNGQLKPKGNKAEVAIRYDGKFKYDGKA
                     THGPSVKNAVYAHQIETGLYDGCYISTTTDKEIAKKFATSSGIENGYIYVLNRDLFGQ
                     YSIFEYEVEHPENPNEKEVTIRAEDCGCIPEEVIIAKELIEIN"
     gene            complement(2437..4044)
                     /gene="aceF"
                     /locus_tag="ACFM6C_000804"
     CDS             complement(2437..4044)
                     /gene="aceF"
                     /locus_tag="ACFM6C_000804"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045254 - pyruvate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0004742 - dihydrolipoyllysine-residue
                     acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HFC6158288.1"
                     /translation="MSIVEIKVPDIGGHENVDIIAVEVKAGDTIAVDDTLITLETDKA
                     TMDVPADAAGVVKEVKVKVGDKISEGGVILTVETGAAAAEAASAAAEAQPAPAAAPVA
                     AGGATVQVAVPDIGGHTDVDVIAVEIKVGDTVAEDDTLITLETDKATMDVPCTAAGVV
                     KAVFLKVGDKVSEGSVIIEVETVGSAAATPAQAAQAAAPAAAPPPTAAAAPAAAPAPS
                     APAAAKIDEAAFAKAHAGPSARKLARELGVDLGQVKGTGLKGRIVGDDIKAFVKSVMQ
                     GGAAKPAAAGASLGSGLDLLPWPKVDFSKFGNVEVKELSRIKKISGQNLSRNWVVIPH
                     VTVHEEADMTELEEFRKQLNKEWEREGVKLSPLAFIIKASVSALKAFPEFNASLDGDN
                     LVLKNYFNIGFAADTPNGLVVPVIKDVDQKGLKQISQELTELSKKAREGKLKPQEMQG
                     ACFTISSLGGIGGTGFTPIVNAPEVAILGVCKSQIKPVWNGKEFAPRLMCPLSLSFDH
                     RVIDGAAGMRFTVFLAKLLKDFRRITL"
     gene            complement(4194..6857)
                     /gene="aceE"
                     /locus_tag="ACFM6C_000805"
     CDS             complement(4194..6857)
                     /gene="aceE"
                     /locus_tag="ACFM6C_000805"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045254 - pyruvate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0004738 - pyruvate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HFC6158289.1"
                     /translation="MSTQLHDVDPIETQEWLDALSSVLEYEGGERAQYLLENLVKYCR
                     DKGVRMPHGTTTPYLNTVSVENEKGIPGDQNIEHRIRAFVRWNAAAIVLRAGKKDLEL
                     GGHIASFQSAATMYEVGFNHFWKAKGEGEEGDLVFFQGHVAPGIYARAFVEGRLTEDQ
                     LNNFRQEVDGHGLPSYPHPHLLPDFWQFPTVSMGLGPIMAIYQARFLKYLESRGLAKT
                     KGRKVWCFCGDGEMDEPESQGAIALAAREGLDNLIFVINCNLQRLDGPVRGNGKIIQE
                     LEGNFAGAGWNVVKVIWGRRWDRLLAKDKDGILRQRMEECLDGDYQTYKSKDGAYVRE
                     HFFNTPELKALVADMTDEQLWALNRGGHDPQKVYNAYDRAANHADGKPTVILAKTIKG
                     YGMGASGEGQNVAHQAKKMDKASLKQFRDRFDIPVTDEQIESGDLPYLTFAPDTEEYK
                     YLHARRDALGGYLPQRKPTQEVLEVPELSAFDAQLKSSGEREFSTTMAFVRILSTLLK
                     DKKIGKRVVPIVPDESRTFGMEGMFRQYGIWNPKGQQYTPQDKDQLMFYKESVDGQIL
                     QEGINEPGAMADWIAAATSYANSNFAMIPFYIYYSMFGFQRIGDLAWAAGDMHARGFL
                     LGGTAGRTTLNGEGLQHEDGHSHIQADLIPNCVSYDPTFQYEVAVIVQDGLRRMYANN
                     EDVFYYITLMNENYTHPDMPEGAEQDILKGMYLLKAGGKGDKKVQLMGSGTILQEVIA
                     GAELLKADFGVEADIWSCPSFNLLHRDAVEVERFNRLHPLEAEKVPFVTSQLQGHDGP
                     VIAATDYIRSYADRIRAYIPNDYHVLGTDGFGRSDSRANLRRFFEVDRYNVAVAALSA
                     LAEQGKVSKETVQQAIEKYGIKADSAPSWKR"
     gene            7551..9263
                     /locus_tag="ACFM6C_000806"
     CDS             7551..9263
                     /locus_tag="ACFM6C_000806"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HFC6158290.1"
                     /translation="MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMP
                     MGLRVLRKVENVVREEMARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDR
                     DFCMGPTCEEVIADIVRKEVNSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDA
                     YSFHADYASLQTTYDAMYDAYCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE
                     DVIAYSDTSDYAANVELAPTLPLKGERTAAQAELTKVHTPNVKTIESLVEFLNIPVEQ
                     TLKSIVVESENEGEIVLLLLRGDHEFNDIKAEKLAGVKSPLTMASPAAIVEQFGANGG
                     SLGPVGFTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGD
                     ESPDGQGRLKLARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIMEMGCYGIGITRVV
                     AAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLD
                     DRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRDNEAQAIAIGEIVARVTA
                     SLNA"
     gene            9326..9982
                     /locus_tag="ACFM6C_000807"
     CDS             9326..9982
                     /locus_tag="ACFM6C_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HFC6158291.1"
                     /translation="MASVFLEGEAVEVGNIFCIGRNYAAHIEELKNEIPSEPVVFMKP
                     SGSILNSGGTILLPEFSRDVQFECELVLLVGQDADGMGEGEDILGCVAGYGVGLDLTA
                     RDIQCHLKAQGLPWLKAKGFRHSACVSDFAAADRIGNPEKVLFSLKQNGVLKQRGDTG
                     LMIYPIREILHKLAADYGLGKGDLVFTGTPSGVGAIGAGDNLALELDGLVRASFTVGC
                     "
     gene            complement(9992..10447)
                     /gene="ruvX"
                     /locus_tag="ACFM6C_000808"
     CDS             complement(9992..10447)
                     /gene="ruvX"
                     /locus_tag="ACFM6C_000808"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HFC6158292.1"
                     /translation="MHKIPKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDE
                     KFAAIAKLVQEWQPRYFVVGLPVHTDGTEHEMTHLSRKFGRRLHGRFNLPVYWVDERL
                     SSVYAESLLSEAQVFGKKRKSVLDQVAAQAILHGFFEGGPAECFNGRKG"
     gene            complement(10440..10988)
                     /locus_tag="ACFM6C_000809"
     CDS             complement(10440..10988)
                     /locus_tag="ACFM6C_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HFC6158293.1"
                     /translation="MNLSNHFLVAMPDMEDAFFSQSVVYICKHDEDGALGIAINKPSP
                     ITMDMIFSATGKNIPMRMQHDSVMMGGPVQVERGYVVHTPVGNWQSSIGVSDGIALTS
                     SRDVLENISREGAVDKALISIGYSSWGKGQLERELADNAWLTVPADEHILFDIPYEHR
                     YAAAFAKLGIDPLALFSGAGHA"
     gene            complement(10990..11550)
                     /locus_tag="ACFM6C_000810"
     CDS             complement(10990..11550)
                     /locus_tag="ACFM6C_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CreA family protein"
                     /protein_id="HFC6158294.1"
                     /translation="MNRLLLLSAAVLLTACGSGETDKIGRASTVFNMLGKNDRIEVEG
                     FDDPDVQGVACYISYAKKGGLKEMVNLEEDASDASVSCVQTASSISFDETAVRKPKEV
                     FKHGASFAFKSRQIVRYYDPKRKTFAYLVYSDKIIQGSPKNSLSAVSCFGGGIPQTDG
                     VQADTSGNLLAGACMISNPIENPDKR"
     gene            11878..13683
                     /locus_tag="ACFM6C_000811"
     CDS             11878..13683
                     /locus_tag="ACFM6C_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HFC6158295.1"
                     /translation="MRYKPLLLALMLVFSTPAVAAHDAAHNRSAEVKKQTKNKKEQPE
                     AAEGKKEKGKNGAVKDKKTGGKEAAKEGKESKKTAKNRKEAEKEATSRQSARKGREGD
                     KKSKAEHKKAHGKPVSGSKEKNAKTQPENKQGKKEAKGQGNPRKGGKAEKDTVSANKK
                     VRSDKNGKAVKQDKKYREEKNAKTDSDELKAAVAAATNDVENKKALLKQSEGMLLHVS
                     NSLKQLQEERIRQERIRQERIRQARGNLASVNRKQREAWDKFQKLNTELNRLKTEVAA
                     TKAQISRFVSGNYKNSQPNAVALFLKNAEPGQKNRFLRYTRYVNASNREVVKDLEKQQ
                     KALAVQEQKINNELARLKKIQANVQSLLKKQGVTDAAEQTESRRQNAKIAKDARKLLE
                     QKGNEQQLNKLLSNLEKKKAEHRIQDAEAKRKLAEARLAAAEKARKEAAQQKAEARRA
                     EMSNLTAEDRNIQAPSVMGIGSADGFSRMQGRLKKPVDGVPTGLFGQNRSGGDVWKGV
                     FYSTAPATVESIAPGTVSYADELDGYGKVVVVDHGENYISIYAGLSEISVGKGYMVAA
                     GSKIGSSGSLPDGEEGLYLQIRYQGQVLNPSSWIR"
     gene            13810..15294
                     /locus_tag="ACFM6C_000812"
     CDS             13810..15294
                     /locus_tag="ACFM6C_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HFC6158296.1"
                     /translation="MSKPVFKKIALYTLGAISGVAVSLAVQGFAAEKDRRDNEVLPVQ
                     SIRTMAEVYGQIKANYYQDKPDADLFEGAMKGMVAGLDPHSEYMDKKGYAEIKESTSG
                     EFGGLGMEIGQEDGFVKVVSPIEDTPAERAGVKSGDFIVKIDNVSTRGMTVSEAVKKM
                     RGKPGTKITLTLSRKNADKPIVVNLTRAIIKVKSVRHHLIEPDYGYIRVSQFQERTVE
                     SVNTAAKELVKENKGKPLKGLVLDLRDDPGGLLTGAVGVSAAFLPSEAVVVSTKGRDG
                     KDRMVLKAIPEDYVYGMGGDSLAGIPAELKTIPMTVLVNSGSASASEIVAGALQDHKR
                     AVIVGTQSFGKGSVQTLIPLSNGSAVKLTTALYYTPNDRSIQAQGIVPDVEVKDKERI
                     FESREADLVGHIGNPLGGEDVNSETLAVPLEKDADKPAVKEKGKKKKDEDLSSRRIPN
                     PAKDDQLRKALDLVKSPEQWQKSLGLAAKKPVSNKDKKDKKDKK"
BASE COUNT         3686 a         3790 c         4265 g         3660 t
ORIGIN      
        1 ccggaggaaa tattttaatc cgctgtaaaa tagaaaatgc cgtctgaaca tttcagacgg
       61 catttgctca aataaacctt atcggctgtt tattcagtcg gatttatttt ttcttttgcg
      121 gaggcaggtc ggtacaagta cccaatgcca cttccgcagc cataccgatg gattcgccca
      181 aggtcgggtg cgggtggatg gttttgccga tgtctgccgc gtcgcagccc atttcgatgg
      241 caaggcagac ttcgccgatc atgtcgccac cgttcggacc gacaatgccg ccgccgatga
      301 tgcggccggt ttcagcatca aaaatcagct tggtgaaacc attgtcgcaa ccgttggcaa
      361 tcgcacggcc ggaagctgcc cacgggaagt tggctttggt gattttgcgg ccggatgctt
      421 tggcggacaa ctcggtttcg cccacccacg ccacttcggg ggaagtgtag gcaacgccag
      481 gaatcacgcg cgcgtcgaag taggctttgt agccggcgca gttttcagcg gcaacgtggc
      541 cttcgtgaac ggctttgtgc gccaacatcg gttgaccgac gatgtcgccg atggcgtaga
      601 tgtgcggcac gttggtacgc atttgtttgt ccacttcgat gaagccgcga tcggttacgg
      661 caacgcctgc tttttccgcg ctgatgagtt tgccgttggg cgcgcggccg gcggcaacca
      721 atacggcatc gtagcgttgc ggctctttcg gtgcatttgc accttcaaag gtaacgtaaa
      781 cgccgtcttc tttcggctcg actgcaacgg ttttggtgtt gaccataatg ttgtcaaaac
      841 ggtattcgtt ttgtttttgc catactttca ccaagtcgcg gtctgcgcct tgcatcaggc
      901 cgtccatcat ttcaaccaca tccaaacgcg aacccagcgt gctgtaaacc gtacccatct
      961 cgaggccgat aatgccgccg ccgataatca gcagtttgcc cggtacttct ttcagagcca
     1021 atgcgccgct ggaatcgatg atgcgcggat cttcaggaat gaaaggcagt ttggttacgc
     1081 ggctgcctgc tgcaatgata cagtttttga aggcaacgat ttttttctcg ccggtagtgg
     1141 ctgcctgttc gtacgcgtcg ccggcagtca gcgacacttc caagtggtgc ggatctaaga
     1201 attgcccgtc gccttggata acgtccactt tacggctttt cgccatacct gccaaaccgc
     1261 ccgtgaggcg ggaaactacg ccgtctttgt aggcgcgaag catatcgatg tcgagttccg
     1321 gctcggggta tttgataccg ttggcagcca agtggcgcac ttcgtcgata acggcggcat
     1381 tgtgcaacag ggctttggaa gggatacagc cgacgttcag gcaaacgccg cccaaagttt
     1441 tgtaacgctc gacgatggcg actttcaagc cttcatcggc agcggcaaat gcagcggagt
     1501 aaccgccagg gccgccgccc aatacgacca cgtcgtactc ggcatcggca gaaccgccga
     1561 attgcgcggc ttgcggagca ggagcggcag ctttaggggc ttcttgcgcc ggggcggcag
     1621 ccgcttcggc tttaggggcg gcagccgtgc cttcagcttc aacgacaaca atcaaaccgc
     1681 cttcggagat tttgtcgccg actttgactt tcacttcttt gaccacgccc gcaacttcgg
     1741 caggcacgtc catcgtcgct ttgtcggttt ccaaggtaat cagggtatcg tccacagcaa
     1801 tagtgtcgcc cacgttcact tcaactgcga taatatctac attttcgtgt ccgccaatgt
     1861 cgggcacttt caattcaact aaagccatta tattgacctt tcaacttagt taatttctat
     1921 caactcttta gcaataatca cttcttcagg aatacagcca caatcttcag ctctgattgt
     1981 tacttccttc tcatttgggt tttctggatg ttcaacctca tattcaaaaa tagaatattg
     2041 accaaacaaa tccctattta aaacatatat atagccattt tcgatgccgg aacttgttgc
     2101 aaatttcttg gcaatttcct tgtctgttgt cgtagatata taacatccgt catatagacc
     2161 tgtttcaatt tgatgggcgt aaactgcatt cttcacactt ggaccatgtg tagctttacc
     2221 atcatattta aacttaccat cataacgaat tgcaacttca gctttattac ctttaggttt
     2281 taactgtcca ttattttgct catcttgttg gcaactaatg cctctatata agaaatttcc
     2341 cataagttat taatttaaag gttgaattta acaccattac tcatcaatct caagcaatcc
     2401 aaacattatc agattgcttg agagggatgt tttattttat aaggtaatgc ggcggaagtc
     2461 tttcaatagc ttcgccaaga atacggtgaa gcgcataccg gccgcaccgt cgatgacgcg
     2521 gtggtcgaag gacaggctca acgggcacat caggcgcggg gcaaactctt tgccgttcca
     2581 aaccggtttg atttgggatt tgcacacgcc caagatggcg acttcgggag cgttcacaat
     2641 tggcgtgaag cctgtgccgc cgatgccgcc taagctggaa atggtaaagc acgcgccttg
     2701 catttcttgc ggtttgagct tgccttcacg ggcttttttg gacaattcgg tcaattcttg
     2761 gctgatttgt ttcaaacctt tttgatccac gtctttgatg acgggaacaa ccaagccgtt
     2821 cggcgtatcg gctgcgaaac cgatgttgaa gtagtttttc agcaccaggt tgtcgccgtc
     2881 cagagaagcg ttgaattcgg ggaaggcttt cagcgcggaa acggaggctt tgatgatgaa
     2941 cgccagagga gacagtttca cgccttcgcg ttcccattct ttgttcagtt gtttgcggaa
     3001 ttcttccagc tcggtcatat ctgcttcttc gtgtacggta acgtggggaa tcaccaccca
     3061 gttgcgagac aggttttgac cggagatttt cttaatgcgg gacaattctt taacttcgac
     3121 attgccgaat ttggagaagt ccactttagg ccacggcagc aagtccagac cgctgcccaa
     3181 agatgcgccg gctgcggcag gttttgccgc gccaccctgc attacggatt tcacaaaggc
     3241 tttgatgtcg tcgcccacga tgcggccttt caagccggta cctttgactt ggcccaaatc
     3301 cacgcccaat tcgcgcgcca gtttgcgtgc ggaagggccg gcgtgtgctt tggcgaaagc
     3361 ggcctcgtcg attttggcag cggcaggtgc agaaggtgca ggcgcggcgg cgggtgcggc
     3421 ggcagcagtc ggaggcggag cggcagccgg tgcggcagct tgagcggctt gagcaggggt
     3481 tgctgcggca gagccgacgg tttctacttc gataatgaca gagccttcgg atactttgtc
     3541 gccgactttt aagaatacgg ctttaacgac accggcagcg gtacaaggta cgtccattgt
     3601 cgctttatcg gtttccaaag taatcagcgt gtcgtcttcg gcaacggtgt cgcccacttt
     3661 gatttcaacg gcgatgacat ccacatcggt atggccgccg atatcgggaa cggctacttg
     3721 aacggttgca ccgcctgcgg caacgggtgc ggcagcaggt gcaggttgtg cttcggcagc
     3781 agccgaggcg gcttcggcag cggcggcacc ggtttcaacg gtcaaaatta cgccgccttc
     3841 ggagattttg tcgccgactt tgacttttac ttctttcacg acaccggcag catcggcagg
     3901 cacatccatc gtggctttgt cggtttccag tgtaatcagg gtgtcgtcaa cggcgatggt
     3961 gtcgcccgct ttaacttcta cggcgatgat gtcgacgttt tcgtgaccgc cgatatcggg
     4021 gactttgatt tctacgatac tcatttgagt tcctttaatc ttgttcagtt ggatgccgtc
     4081 tgaaagctgc ttcaggcggc atcggtacgg tttgtctgct caaaccattc gggcattcgg
     4141 ttttcagacg gcctgatgtc ggaatggggc aaacagaccg tctgaaacat caatcagcgt
     4201 ttccagctag gagctgaatc ggctttgatg ccgtatttct caatggcttg ttgaacggtt
     4261 tctttgctga ctttgccttg ttccgccaat gcgctcaatg ctgccacggc aacgttgtag
     4321 cgatccactt caaagaagcg gcgcaggttg gcgcggctgt cggagcggcc gaagccgtca
     4381 gtacccaaga cgtggtagtc gttcgggatg taggcgcgga tacggtcagc atagctgcgg
     4441 atatagtcgg tagcggcaat aaccggaccg tcatgacctt gcagttggga agtaacgaaa
     4501 ggtacttttt cggcttccag cggatgcagg cggttgaagc gttctacctc gacagcgtcg
     4561 cggtgcagca ggttgaagga tgggcaagac caaatgtctg cttccacgcc gaagtcggct
     4621 ttcagcagct cggcaccggc aatcacttct tgcaaaatcg taccggagcc catcaattga
     4681 actttcttgt cgcctttgcc gccggctttc agcaggtaca tacctttcaa gatgtcttgt
     4741 tccgcacctt cgggcatatc cggatgggtg tagttctcgt tcatcagggt gatgtagtag
     4801 aacacgtctt cattattggc atacatacgg cgcagaccgt cttgtacgat gacggcgact
     4861 tcgtattgga aagtcgggtc ataagatacg cagttcggaa tcaggtcggc ctggatgtgg
     4921 ctgtggccgt cttcgtgttg caggccttcg ccgttcagcg tcgtacggcc ggcagtaccg
     4981 cccagcagga agccgcgcgc gtgcatatcg cccgccgccc aagccaagtc gccgatacgt
     5041 tggaaaccga acatagaata gtaaatgtag aacggaatca tcgcgaagtt gctgttggcg
     5101 tagctggttg cagccgcaat ccagtcggcc atcgcgcccg gttcgttaat accttcttgc
     5161 aagatttgac cgtcaacgga ttctttatag aacatcagtt ggtctttgtc ttgaggggta
     5221 tattgctgac ctttcggatt ccaaataccg tattggcgga acataccttc catgccgaaa
     5281 gtacggcttt cgtcgggaac gataggtacg acgcgtttgc cgattttttt gtctttcagc
     5341 aaagtggaca ggatgcggac gaatgccatc gtggtcgaga actcgcgttc accgctggat
     5401 ttgagttgtg cgtcgaatgc tgacagctcg ggcacttcca atacttcctg cgtcggtttg
     5461 cgttgcggca ggtagccgcc caaagcatcg cggcgtgcgt gcaggtattt gtattcttcc
     5521 gtatcggggg caaaagtcag gtaaggcaga tcgccgcttt cgatttgttc gtcggtaacc
     5581 ggaatgtcaa agcggtcgcg gaattgtttc agggacgctt tgtccatttt tttggcttgg
     5641 tgggcaacgt tctgaccttc gccggatgcg cccataccgt aacctttaat ggttttcgcc
     5701 aagatgacgg taggtttgcc gtcggcatgg ttcgctgcgc ggtcgtaggc gttgtacact
     5761 ttttgcgggt cgtggccgcc gcggttcaat gcccagagtt gctcatcggt catatcggca
     5821 accaatgctt tcagttcggg cgtattgaag aagtgttcgc gcacatacgc gccgtctttg
     5881 gatttgtaag tttggtagtc gccgtccaaa cattcttcca tacgttggcg caggataccg
     5941 tctttgtctt tcgccaagag gcggtcccag cggcggcccc aaatgacttt gacgacattc
     6001 cagccggcgc cggcaaagtt gccttccaat tcttggatga ttttgccgtt gccgcgtacc
     6061 ggaccgtcca agcgttgcag attgcagttg atgacgaaaa tcaggttgtc caagccttcg
     6121 cgtgcagcca gtgcgattgc accttgagat tcgggttcgt ccatttcgcc gtcgccgcag
     6181 aaacaccata ctttacggcc tttggttttt gccaaaccac gcgattccaa gtatttcagg
     6241 aaacgcgcct gataaatcgc catgatgggc cccaagccca tggatacggt cgggaactgc
     6301 caaaagtcgg gcaagaggtg ggggtgcgga taggaaggca gaccgtgtcc gtccacttct
     6361 tggcggaagt tgttcagctg gtcttcggtc agacggccct cgacgaatgc gcgtgcatag
     6421 atgcccgggg cgacgtgacc ttggaagaag accaaatcgc cttcttcgcc ttcgcctttg
     6481 gctttccaaa agtggttgaa accgacttcg tacatggtgg cggcagattg gaaagatgcg
     6541 atgtgcccac ccagttccaa atctttcttg ccggcgcgca atacgatggc ggcggcgttc
     6601 cagcgcacga atgcgcggat gcggtgttcg atgttttggt cgcccggaat gcctttttcg
     6661 ttttcaaccg aaacggtatt caaatacggg gtggtcgtgc cgtgtggcat acgtacgccc
     6721 ttgtcgcggc agtatttgac caggttttcc aagaggtatt gtgcgcgttc gccgccttca
     6781 tattcgagga cggagcttaa cgcgtccagc cactcttggg tttcgatagg gtcaacatcg
     6841 tgtaattggg tggacatagt atctatcctt tatgttgagt gtttaatcgg cagggagggt
     6901 gtagccaacc cctttatttt cgtttgtgaa aaataataag caaaaacgaa aatttctaaa
     6961 tcaaaccgaa aaaaataatt taagtttaat gttttcaaaa aattataaaa gttttggaaa
     7021 caagggaaaa cttgaaaaaa atgttcgatc tgctccacac gaaatcctat cagcaatcgg
     7081 gtctgctggc aaataaccat gcctgtaaaa gcaggtttta tactgaagtt ggcgtttggt
     7141 aaggtcaagt ctttttgatt tcgaaatatt ctgtttgatt ttggcgatat tttttcggaa
     7201 ttgtggtata tcgaatcatt atgtctctgt cggcaatttt cctattgtag aaaatctata
     7261 cacaagcttt gtggataacc gtgttgataa gccacggctt gtgttaaaaa agtcttacgc
     7321 aacaaatgta cgcttatttt gattaaaaaa taggcacatt taaatctata aaaatcatgt
     7381 gcttatgttc aatatgatgt ttctggtcat gtttttgccg tctgttatgg gatttgtccc
     7441 gcgcttgggg cagggggtaa attttggagg ttggtgcaaa acctgctttt ttcgcgttac
     7501 aatctgcacc cgatttactt ttgaatttgc ctgtttggaa aaatattttt atgaaagcca
     7561 gccaattctt tatctctact ttaaaagaag cccctgccga agccgcgctt gccagccaca
     7621 agctgatgat acgcgccggt ctgattaaag ccaacgcgtc cggcctttat acttggatgc
     7681 cgatggggct gcgcgtgtta cgcaaagtcg aaaacgtcgt gcgcgaggaa atggcgcgcg
     7741 cgggcagcgt ggagctgctg atgccggtgg tgcagcctgc cgagctgtgg caggaatccg
     7801 gccgctggga attttacggt aaagaactgc tgcgcctgaa agaccgccac gaccgcgatt
     7861 tctgcatggg tccgacttgt gaagaagtga ttgcggacat cgtgcgtaaa gaagtcaaca
     7921 gctacaaaca attgccgaaa aacttttacc acatccaaac caaattccgc gacgaagtgc
     7981 gcccgcgctt cggtgtgatg cgtgcgcgcg agtttgtcat gaaagatgct tattccttcc
     8041 atgccgacta cgcctcgctt cagacgacct atgatgccat gtatgacgct tactgccgta
     8101 tcttcacccg tctgggcttg gcattccgcc ccgttgccgc agataccggc agcatcggcg
     8161 gtaccggctc tcacgagttt caagtgttgg cggaaagcgg cgaagatgtg attgcataca
     8221 gcgacacttc cgattacgcc gccaatgtcg agctggcacc gaccttgccg cttaaaggcg
     8281 aacgcaccgc tgctcaggcc gagttgacca aagtacatac accaaatgtc aaaaccattg
     8341 agtctttggt tgaattcctg aatattccgg ttgaacaaac cctcaaatcc atcgtggtcg
     8401 aaagcgaaaa cgaaggcgaa atcgtcttat tactgttgcg cggcgaccat gagttcaacg
     8461 acatcaaagc cgaaaaactc gcgggcgtga aatcgccatt gacgatggca agtcctgccg
     8521 cgattgtcga acagttcggc gcaaacggcg gctcgctcgg ccctgtcggc ttcacaggca
     8581 aagtctatgc cgatttcgct accgaaaaag gcgcggactg ggttatcggc gcaaacgaag
     8641 acgactacca ctataccggg ttcaatttcg gccgagacgc tgccgagcct gagtttgtcg
     8701 atttgcgcaa cgtcgtcgaa ggcgacgaaa gccccgacgg gcaaggccgt ctgaaactgg
     8761 cgcgcggcat tgaagtcgga cacgtcttcc agttgcgtga caaatatact aaagcgatga
     8821 atgtcagctt cttggacaac aacggcaaat cgcaaattat ggaaatgggc tgctacggca
     8881 tcggcatcac ccgcgtcgtt gccgccgcca tcgagcagaa taacgacgaa aaaggcatca
     8941 tctggaccaa agcaatggcg ccgtttgaag tcgttatcgt gccgatgaac tacaaaaaat
     9001 cagacaccgt acgcgaagcc gccgacaaaa tctatgccga attgctggcg gcaggcgcgg
     9061 atgtgctgct ggatgaccgc gacgaacgcg caggcgtatt gctgaacgat tccgagcttc
     9121 tcggtattcc gcaccgcatc gtcatcggcg accgcgcctt gaaagaaggc aatgtcgaat
     9181 acgccgaacg ccgcgacaac gaagcgcagg caattgcaat cggagaaatt gttgcacgtg
     9241 taacagcttc attaaatgcg taagcttggt cgaatgccgt ctgaaaataa tttcagacgg
     9301 catttttact tagggggaaa gtgaagtggc ttcagtattt ttagaaggag aggcagtcga
     9361 ggtcggcaat attttctgta tcggcaggaa ctatgccgca catatcgaag agttaaaaaa
     9421 cgaaatacct tccgaacctg tggtgtttat gaagccgtca ggcagcattt tgaatagcgg
     9481 cggtacaatc ttgctgcccg agtttagtag ggatgtgcag tttgagtgcg aactcgtgtt
     9541 gctggtcggt caggatgcgg acggcatggg cgagggtgaa gatattttgg gatgcgtggc
     9601 ggggtacggc gtgggtttgg atttgaccgc gcgggacatc caatgccatc tgaaggcgca
     9661 ggggctgccc tggctgaagg caaaagggtt caggcattcc gcgtgcgtgt cggattttgc
     9721 ggcggcagac agaatcggca atcccgagaa ggtgttgttt tcattaaaac aaaacggcgt
     9781 attgaaacag cgcggggata ccggtttgat gatttacccg attcgggaaa ttttacacaa
     9841 actggcggcg gattacggtt tggggaaagg ggatttggtg tttaccggaa cgccctccgg
     9901 cgtgggcgca atcggtgcgg gggacaattt ggcattggag ctggacggct tggtgcgcgc
     9961 ctctttcacg gtagggtgtt aaccgcgccg cttaaccctt acgcccgttg aaacattccg
    10021 ccggaccgcc ctcgaaaaaa ccgtgcaaga tggcttgcgc cgccacttgg tcgagcaccg
    10081 atttgcgttt tttgccgaag acctgtgctt ccgaaagcag gctttcggca tagacggatg
    10141 acagccgttc gtccacccaa tagacgggga gattgaacct gccgtgcagc ctgcgcccga
    10201 acttgcggga cagatgcgtc atttcgtgtt ccgtgccgtc ggtatgcacg ggcagtccga
    10261 cgacaaaata acgcggctgc cattcttgaa ccagcttggc gattgccgcg aacttttcat
    10321 cgttgctgcc gccggtaacg gtgctcaaag gatgggatag ccctaattcc gcgtctcctt
    10381 gtgccacgcc gatacgcgct tcgccgaagt cgaatgccag tgccgttcct tttggaattt
    10441 tatgcatggc cggctcccga aaacagggcg agcgggtcga tgccgagttt ggcaaaggcg
    10501 gcggcgtaac ggtgttcgta ggggatgtcg aacaagatat gttcgtcggc gggaacagtc
    10561 agccacgcat tgtcggcaag ttcgcgttcg agctggcctt ttccccagct tgaatagcct
    10621 atgctgatca aggctttgtc aaccgcacct tcgcgtgaaa tgttttcaag cacatcgcgg
    10681 gaagaggtca gcgcgatgcc gtctgaaacg ccgatgctgc tttgccagtt gccgaccggc
    10741 gtgtggacga cgtaaccgcg ctcgacctgc accggcccgc ccatcatcac gctgtcgtgc
    10801 tgcatccgca tggggatgtt tttgccggtg gcggaaaaaa tcatgtccat cgtaatcgga
    10861 gagggtttgt tgatggcgat gccgagtgcg ccgtcttcat cgtgtttgca gatatagacg
    10921 accgattgtg aaaaaaacgc gtcttccata tcgggcatgg cgacgagaaa gtggttggag
    10981 aggttcatat cagcgtttgt cgggattttc tatcgggttg gaaatcatgc aggcgccggc
    11041 aagcaggttg ccggaagtat cggcttgcac cccatcggtt tgcggtatgc cgccgccgaa
    11101 acaggaaacc gcgcttaagg aatttttcgg cgagccttgg atgattttat cgctgtacac
    11161 caaataggcg aaggttttgc gtttggggtc gtaataacgg acaatctgcc ggctcttgaa
    11221 cgcgaagctc gcaccgtgtt tgaaaacttc tttcggtttg cgcacggcgg tttcgtcaaa
    11281 agaaatcgaa gatgccgtct gaacgcacga aaccgatgcg tcggacgcgt cctcttccaa
    11341 attgaccatt tccttcaagc cgcctttttt tgcatacgaa atataacagg caaccccttg
    11401 aacgtcggga tcgtcgaatc cttccacttc gatacggtcg tttttgccca gcatgttgaa
    11461 aacggtactt gcccgtccga ttttatcggt ttcgccgctg ccgcaggcag tcagcaggac
    11521 ggcggcagac agcagtagca gtctgttcat caaaatttcc ttatcggttg aatccccgtt
    11581 ttccgtgaag gcggcagggc ttgctttgtt tggaggggcg cacgttccca aaatcgggca
    11641 acatacggta tgcggcttaa tgtgctaccc tgtgtgtcgg aacacaatat ccgttgcggc
    11701 attgaaaata tgacgcacaa tataaggctg tttgagccga ttgcaagtat ccgcgcaaag
    11761 aaggcgcaag attgggcaaa cggcattttc agacggcata actgacagta taatccaaac
    11821 gtccggctgc tttcgtgcag ccttcagtat tatccaactt tttccgaagg tcgaaccatg
    11881 cgctacaaac cccttctgct tgccctgatg ctcgtttttt ccacgcccgc cgttgccgcc
    11941 cacgacgcgg cacacaaccg ttccgccgaa gtgaaaaaac agacgaagaa caaaaaagaa
    12001 cagcccgaag cggcggaagg caaaaaagaa aaaggcaaaa atggcgcagt gaaagataaa
    12061 aaaacaggcg gcaaagaggc ggcaaaagag ggcaaagagt ccaaaaaaac cgccaaaaac
    12121 cgcaaagaag cagagaagga ggcgacatcc aggcagtctg cgcgcaaagg acgcgaaggg
    12181 gataagaaat cgaaggcgga acacaaaaag gcacatggca agcccgtgtc cggatccaaa
    12241 gaaaaaaacg caaaaacaca gcctgaaaac aaacaaggca aaaaagaggc aaaaggacag
    12301 ggcaatccgc gtaagggcgg caaggcggaa aaagacactg tttctgcaaa taaaaaagtc
    12361 cgttccgaca agaacggcaa agcagtgaaa caggacaaaa aatacaggga agagaaaaat
    12421 gccaaaaccg attccgacga attgaaagcc gccgttgccg ctgccaccaa tgatgtcgaa
    12481 aacaaaaaag ccctgctcaa acaaagcgaa ggaatgctgc ttcatgtcag caattccctc
    12541 aaacagcttc aggaagagcg tatccgccaa gaacgtatcc gccaagagcg tatccgtcag
    12601 gcgcgcggca accttgcttc cgtcaaccgc aaacagcgcg aggcttggga caagttccaa
    12661 aaactcaata ccgagctgaa ccgtttgaaa acggaagtcg ccgctacgaa agcgcagatt
    12721 tcccgtttcg tatcggggaa ctataaaaac agccagccga atgcggttgc cctgttcctg
    12781 aaaaacgccg aaccgggtca gaaaaaccgc tttttgcgtt atacgcgtta tgtaaacgcc
    12841 tccaatcggg aagttgtcaa ggatttggaa aaacagcaga aggctttggc ggtacaagag
    12901 cagaaaatca acaatgagct tgcccgtttg aagaaaattc aggcaaacgt gcaatctctg
    12961 ctgaaaaaac agggtgtaac cgatgcggcg gaacagacgg aaagccgcag acagaatgcc
    13021 aaaatcgcca aagatgcccg aaaactgctg gaacagaaag ggaacgagca gcagctgaac
    13081 aagctcttga gcaatttgga gaagaaaaag gccgaacacc gcattcagga tgcggaagca
    13141 aaaagaaaat tggctgaagc cagactggcg gcagccgaaa aagccagaaa agaagcggcg
    13201 cagcagaagg ctgaagcacg acgtgcggaa atgtccaacc tgaccgccga agacaggaac
    13261 atccaagcgc cttcggttat gggtatcggc agtgccgacg gtttcagccg catgcaagga
    13321 cgtttgaaaa aaccggttga cggtgtgccg accggacttt tcgggcagaa ccggagcggc
    13381 ggcgatgttt ggaaaggcgt gttctattcc actgcaccgg caacggttga aagcattgcg
    13441 ccgggaacgg taagctatgc ggacgagttg gacggctacg gcaaagtggt cgtggtcgat
    13501 cacggcgaga actacatcag catctatgcc ggtttgagcg aaatttccgt cggcaagggt
    13561 tatatggtcg cggcaggaag caaaatcggc tcgagcgggt cgctgccgga cggggaagag
    13621 gggctttacc tgcaaatacg ttatcaaggt caggtattga acccttcgag ctggatacgt
    13681 tgatcggatt gccgaaacgg taggctttat gcaaatcgtg ccgatatggt gcgctgttcc
    13741 gtgaagtttg ccgtttgccg tacctgtatt ttccggtttt tggaaatcaa gagagaaagt
    13801 taaagaagaa tgtcgaaacc tgtttttaag aaaatcgcac tttatacttt gggtgcaatc
    13861 agcggcgtgg ccgtcagtct ggcggtgcag ggttttgccg ccgagaagga caggcgggat
    13921 aacgaagtcc tgccggtgca atccatccgc acaatggcgg aggtttacgg tcaaatcaag
    13981 gcaaactact atcaggacaa acccgatgcc gatttgtttg aaggtgcgat gaagggtatg
    14041 gtggccggtt tggatccgca ttccgaatat atggataaaa aaggttatgc cgagataaag
    14101 gagtccacca gcggcgaatt tggcggcttg gggatggaaa tcgggcagga agacggattt
    14161 gtcaaagtgg tttcgccgat tgaggacacg cctgcggaac gggcgggggt gaaaagcggc
    14221 gatttcattg tgaaaatcga taatgtttcg acacgcggca tgacggtcag cgaagcggtg
    14281 aagaaaatgc ggggcaagcc gggtacgaag attactttga cgctgtcgcg caaaaatgcc
    14341 gacaagccga tagtcgtcaa cctgacccgt gccattatta aagtgaaaag cgtccgccat
    14401 cacctgatcg aacccgatta cggctatatc cgcgtgtcgc agttccaaga gcggacggtc
    14461 gaaagcgtca ataccgccgc aaaagagctg gtaaaggaaa ataaaggaaa accgctcaag
    14521 gggctggtgt tggatttgcg cgacgacccc ggcgggcttt tgactggcgc ggtcggcgtg
    14581 tcggcggcat ttctgccgtc tgaagcagtc gtcgtcagca ccaagggacg cgacggcaaa
    14641 gaccgcatgg tactgaaagc cattcctgaa gattatgtgt acgggatggg cggcgattcg
    14701 ttggcgggca ttcctgccga gttgaaaacc ataccgatga cggtattggt caattccggt
    14761 tcggcttccg cgtcggagat tgtcgcaggt gcattgcagg atcataaacg cgcggtcatc
    14821 gtcggtacgc agagcttcgg caaaggttcg gttcagactt tgattccttt gtccaacggc
    14881 agcgcggtca agctgacaac ggcactgtat tatacgccga acgaccgttc tattcaggcg
    14941 caggggattg ttcccgatgt cgaagtaaaa gataaggaac gcatttttga aagccgcgag
    15001 gcggatttgg tcggacacat cggcaatcct ttgggcggcg aggatgtgaa cagtgaaacc
    15061 cttgccgtgc cgcttgaaaa agatgcggat aagcccgctg taaaagaaaa aggtaaaaag
    15121 aaaaaggacg aggatttgtc ttcaaggcgg attcccaacc ctgccaaaga cgaccagttg
    15181 cggaaagctt tggatttggt caagtcgccc gagcagtggc agaagtcttt ggggctggcg
    15241 gcgaaaaagc cggtttcaaa taaagataag aaagataaaa aagataagaa gtaggttttt
    15301 acgatgccgt ctgaaaggat ttcagacggc atattatgtt tgaaaggaca ggttatgagc
    15361 gattttttac cggaatttga accgtgcggc atttatagtg g
//
LOCUS       DAXHPV010000036        14602 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.036, whole genome shotgun sequence.
ACCESSION   DAXHPV010000036 DAXHPV010000000
VERSION     DAXHPV010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14602
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.036"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(105..389)
                     /locus_tag="ACFM6C_000813"
     CDS             complement(105..389)
                     /locus_tag="ACFM6C_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HFC6158297.1"
                     /translation="MQPAVYILASQRNGTLYIGVTSDLVQRIYQHREHLIEGFTLRYN
                     VTMLVWYELHPTMESAITREKQLKKWNRAWKLQLIEENNVSWQDLWFDII"
     gene            complement(930..2195)
                     /gene="ftsY"
                     /locus_tag="ACFM6C_000814"
     CDS             complement(930..2195)
                     /gene="ftsY"
                     /locus_tag="ACFM6C_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HFC6158298.1"
                     /translation="MFSFFRRKKKQETPAPEEAQVQETAAKAESEVTQIVENIKEEVE
                     SLTESVKGQVESAVETVSGAVEQVKETVAEMLSEAEEAAEKAAEQVEAAKEAVAETVG
                     EAVGQVQEAVATTEEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELET
                     VLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPET
                     KEPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNN
                     VTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKA
                     MPDAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRP
                     VPVRYIGVGEGIDDLRPFDARAFVDALLD"
     gene            2341..3909
                     /gene="msrAB"
                     /locus_tag="ACFM6C_000815"
     CDS             2341..3909
                     /gene="msrAB"
                     /locus_tag="ACFM6C_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional peptide-methionine (S)-S-oxide
                     reductase MsrA/peptide-methionine (R)-S-oxide reductase
                     MsrB"
                     /protein_id="HFC6158299.1"
                     /translation="MKHRTFFSLCAKFGCLLALGACSPKIVDAGAATVPHTLSTLKTA
                     DNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLH
                     EKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSI
                     NEAQALALIRDPNADLGSLKHSFYKPDTQKKDSKIMNTRTIYLAGGCFWGLEAYFQRI
                     DGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDILQYFFRVVDP
                     TSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEPLKNFYDAE
                     EYHQDYLIKNPNGYCHIDIRKADEPLPGKTKTAPQGKGFDAATYKKPSDAELKRTLTE
                     EQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPID
                     AKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPLEQ
                     MDAAGYGALKSKVK"
     gene            complement(4011..4496)
                     /locus_tag="ACFM6C_000816"
     CDS             complement(4011..4496)
                     /locus_tag="ACFM6C_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HFC6158300.1"
                     /translation="MDALHTIARNLTKKRQTVSCAESCTGGMLAAAFTSVAGSSQWFD
                     QSFVTYSNKAKEDRLGVLPETLLEHGAVSRQTVYEMARGAKAVAQADYAVGISGIAGP
                     GGGSESKPVGTVWFGFAFPGGSCEAMRRFDGNRESVRAQAVAFALERLAGLIENGGDA
                     V"
     gene            complement(4523..5371)
                     /locus_tag="ACFM6C_000817"
     CDS             complement(4523..5371)
                     /locus_tag="ACFM6C_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HFC6158301.1"
                     /translation="MDFKQFDFLHLISVSGWEHLAEKAWAFGLNLAAALLIFLVGKWA
                     AKRIVAVMRAAMTRAQVDATLISFLCNVANIGLLILVIIAALGRLGVSTTSVTALIGG
                     AGLAVALSLKDQLSNFAAGALIILFRPFKVGDFIRVGGFEGYVREIKMVQTSLRTTDN
                     EEVVLPNSVVMGNSIVNRSTLPLCRAQVIVGVDYNCDLKVAKEAVLKAAVEHPLSVQN
                     EERQAAAYITALGDNAIEITLWAWANEADRWTLQCDLNEQVVENLRKVNINIPFPQRD
                     IHIINS"
     gene            complement(5465..6466)
                     /locus_tag="ACFM6C_000818"
     CDS             complement(5465..6466)
                     /locus_tag="ACFM6C_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6158302.1"
                     /translation="MKRKIWLLPLLAVSAYLQAQTEVRLAVHKSFSLPKGLIARFERA
                     NDAKVSIIQAGGANEMLNKLILSRANPIADAVYGLDNANIGKAREMGILAAAQPESAP
                     VAVGLPSALAVDYGYVSINYDKKWFEGKKLPLPQTLQDLTRPEYKNLLVVPSPATSSP
                     GLGFLMANISGLGEEGAFKWWAQMRQNGVKVAKGWSEAYYTDFSHNGGAYPLVVGYAA
                     SPAAEVYFSKGKYSEPPTGNLFLKGGVFRQVEGAAVLKGAKQPKLAAKLVQWLQSREV
                     QQAVPSEMWVYPAVKNTRLPDVFRFAQAPTHTTAPAQRDIDANQRGWVSRWIRTVLK"
     gene            6525..7205
                     /locus_tag="ACFM6C_000819"
     CDS             6525..7205
                     /locus_tag="ACFM6C_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HFC6158303.1"
                     /translation="MQENPTVWLFDLDNTLHNADAGIFTLINRAMTRYMARRLKLSES
                     AASDLRQDYWHRYGATLAGLQIHHPEIDIAEFLRESHPIDAILTRLHGMPETQNTLSR
                     LKGRKAVFSNGPSFYVRAVVGALGLENRFAALFGTDDFGLLYKPNPQAYLNVCRLLDV
                     PPECCIMVDDSADNLHQAKAFGMKTVWFGAKSHALPFIDTCARDMAQLARYAETLSER
                     RQNHYNTP"
     gene            7231..7503
                     /locus_tag="ACFM6C_000820"
     CDS             7231..7503
                     /locus_tag="ACFM6C_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spore cortex protein"
                     /protein_id="HFC6158304.1"
                     /translation="MRKTFLILTAAAALLSGCAWETYQDGNGKTAVRQKYPVGTPVYY
                     QDGSYSKNMNYNQYRPERHAVLPDQTGNNADEESRQHWQKPKFQNR"
     gene            7558..8928
                     /gene="glmU"
                     /locus_tag="ACFM6C_000821"
     CDS             7558..8928
                     /gene="glmU"
                     /locus_tag="ACFM6C_000821"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003977 - UDP-N-acetylglucosamine
                     diphosphorylase activity [Evidence IEA];
                     GO_function: GO:0019134 - glucosamine-1-phosphate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0006048 - UDP-N-acetylglucosamine
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HFC6158305.1"
                     /translation="MPQNTLNIVILAAGKGTRMYSKMPKVLHRIGGKPMLGRVIDTAA
                     ALNPQNICVVVGHGKEQVLDTVKRDVVWVEQTEQLGTGHAVKTALPHLSAEGRTLVLY
                     GDVPLIDVETLETLLEAAGNEVGLLTDVPADPTGLGRIIRDGNGSVTAIVEEKDANTA
                     QKAVKETNTGILVLPNAKLENWLNSLSSNNAQGEYYLTDLIAKAVADGIKVHPVQVRA
                     SHLAAGVNNKRQLAELERIFQTGQAQELLKAGVTLHDPARFDLRGRLKHGQDVVIDVN
                     CIFEGDIELGDNVEIGANCVIKNAKIGANSKIAPFSHLESCEVGENNRIGPYARLRPQ
                     ARLSDDVHVGNFVEIKNAAIGKGTKANHLTYIGDAEVGSKTNFGAGTIIANYDGVHKH
                     KTVIGDEVRIGSNCVLVAPVTLGNKVTTGAGSTITRNIEDNKLALARARQTVIEGWVR
                     PEKDKQ"
     gene            9004..9333
                     /locus_tag="ACFM6C_000822"
     CDS             9004..9333
                     /locus_tag="ACFM6C_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein YjdM"
                     /protein_id="HFC6158306.1"
                     /translation="MSLPPCPQCASEYTYEDGGQYICPECAHEWNETESAADLAAQVR
                     DANGAALQNGDTVILIKDLKVKGSSMVIKQGTKVKGIRLQEGDHNIGCKIDGSAMNLK
                     SEFVKKA"
     gene            complement(9405..10670)
                     /gene="efeB"
                     /locus_tag="ACFM6C_000823"
     CDS             complement(9405..10670)
                     /gene="efeB"
                     /locus_tag="ACFM6C_000823"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0033212 - iron import into cell [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake transporter
                     deferrochelatase/peroxidase subunit"
                     /protein_id="HFC6158307.1"
                     /translation="MSKKQPAQPTRRTLFKTAIAAGAVGAIGGYLGGKKQGETAERTA
                     ESQHSPQAYPCYGEHQAGIVTPQQAFSIMCAFDVTAQSAKQLENLFRTLTARIEFLTQ
                     GGEYQDGDDKLPPAGSGILGKAFNPDGLTVTVGVGSSLFDGRFGLKDKKPIHLQEMRD
                     FSNDKLQKSWCDGDLSLQICAFTPETCQAALRDIIKHTAQTAVIRWSIDGWQPKSEPG
                     AMAARNLLGFRDGTGNPKVSDPKTADEVLWTGVAANSLDEPEWAKNGSYQAVRLIRHF
                     VEFWDRTPLQEQTDIFGRRKYSGAPMDGKKEADQPDFAKDPEGDITPKDSHIRLANPR
                     DPEFLKKHRLFRRAYSYSRGLASSGQLDVGLVFVCYQANLADGFIFVQNLLNGEPLEE
                     YISPFGGGYFFVLPGVEKGGFLGQGLLGV"
     gene            complement(10934..12100)
                     /gene="efeO"
                     /locus_tag="ACFM6C_000824"
     CDS             complement(10934..12100)
                     /gene="efeO"
                     /locus_tag="ACFM6C_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake system protein EfeO"
                     /protein_id="HFC6158308.1"
                     /translation="MRKFNLTALSVMLALGLTACQPPEAEKAAPAASGEAQTANEGGS
                     VSIAVNDNACEPMELTVPSGQVVFNIKNNSGRKLEWEILKGVMVVDERENIAPGLSDK
                     MTVTLLPGEYEMTCGLLTNPRGKLVVTDSGFKDTANEADLEKLSQPLADYKAYVQGEV
                     KELVAKTKTFTEAVKAGDIEKAKSLFADTRVHYERIEPIAELFSELDPVIDAREDDFK
                     DGAKDAGFTGFHRIEYALWVEKDVSGVKEIAAKLMTDVEALQKEIDALAFPPGKVVGG
                     ASELIEEVAGSKISGEEDRYSHTDLSDFQANVDGSKKIVDLFRPLIETKNKALLEKTD
                     TNFKQVNEILAKYRTKDGFETYDKLGEADRKALQASINALAEDLAQLRGILGLK"
     gene            complement(12097..12936)
                     /gene="efeU"
                     /locus_tag="ACFM6C_000825"
     CDS             complement(12097..12936)
                     /gene="efeU"
                     /locus_tag="ACFM6C_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033573 - high-affinity iron permease
                     complex [Evidence IEA];
                     GO_function: GO:0005381 - iron ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0034755 - iron ion transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake transporter permease EfeU"
                     /protein_id="HFC6158309.1"
                     /translation="MLVAFLIMLREGIEAALIVGIVAGFLKQSGHSKLMPKVWFGVVL
                     ASLMCLGLGYGIHSATGEIPQKQQEFVVGIIGLVAVAMLTYMVLWMKKAARSMKQQLQ
                     DSVQAALNRGSGQGWALVGMAFLAVAREGLESVFFLLAVFKQSPTWQMPAGAVAGVLA
                     AAVIGALIYQGGMRLNLAKFFRWTGAFLIVVAAGLLAGSLRALHEAGIWNALQDIVFD
                     SSKYLHEDSPLGVLLGGFFGYTDHPTQGEALVWLLYLIPVMTWFLCGSRPSETLTRKE
                     ELK"
     gene            13158..14483
                     /locus_tag="ACFM6C_000826"
     CDS             13158..14483
                     /locus_tag="ACFM6C_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HFC6158310.1"
                     /translation="MKKYLFRAALYGIAAAILAACQSKSIQTFPQPDTSVINGPDRPV
                     GIPDPAGTTVGGGGAVYTVVPHLSLPHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCA
                     QAFQTPVHSFQAKQFFERYFTPWQVAGNGSLAGTVTGYYEPVLKGDDRRTAQARFPIY
                     GIPDDFISVPLPAGLRSGKALVRIRQTGKNSGTIDNAGGTHTADLSRFPITARTTAIK
                     GRFEGSRFLPYHTRNQINGGALDGKAPILGYAEDPVELFFMHIQGSGRLKTPSGKYIR
                     IGYADKNEHPYVSIGRYMADKGYLKLGQTSMQGIKAYMRQNPQRLAEVLGQNPSYIFF
                     RELTGSGNDGPVGALGTPLMGEYAGAVDRHYITLGAPLFVATAHPVTRKALNRLIMAQ
                     DTGSAIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQLLPNGMKPEYRP"
BASE COUNT         3377 a         4374 c         3693 g         3158 t
ORIGIN      
        1 gattcccgcc tgcgcgggaa tgacggttta gaagttgccc gaaacctcaa aaaaaaaaac
       61 cgaaaccgaa caagccggat tcccgcctgc gcgggaatga cgggctaaat aatatcaaac
      121 cataaatcct gccaagaaac attattttct tcaatcagtt gcaatttcca agccctgttc
      181 catttcttca actgtttttc ccgagtaatt gcactctcca tcgtaggatg cagttcatac
      241 caaaccagca tagtaacgtt gtaccgtaat gtaaatccct caatcaaatg ctccctatgt
      301 tggtaaatac gttgcaccaa atcagatgta acgccaatgt ataacgtgcc attacgttgg
      361 cttgctaaaa tataaaccgc aggctgcata taacaccctt ttgaattatt taaatttata
      421 ttcccgcgaa caccatcccg tgattacttt aacccttcgt tattcccata gctttccatc
      481 attcccgcaa ctcttcgtca ttcccgcgaa agtgggaatc tagaacgcaa aatctaaaga
      541 aaccgtttta cccgataagt ttccgcaccg acaaacctag attcccgcct acgcgggaat
      601 gacggcggag cggtttctgt tttttccgat aaatgccgca atctcaaatc ccgtcattcc
      661 cacgaaagtg ggaatctaga atctcggact ttcagataat ctttgaatat tgccgctgtc
      721 caatggtcta gattcccgcc tgcgcgggaa tgacggcatc ggtctgccgt tacaacacgg
      781 tttctttaga ttttacgttc tggattcccg cctgcgcggg aatgacgggt cttttataaa
      841 ctttgaatat tgctgttatc ccaaggtctg gattcccgcc tgcgcgggaa tgacggcatc
      901 ggtctgctgt tttcggacgg catttcggct caatccagca gtgcgtccac aaacgcgcgc
      961 gcgtcaaacg ggcgcaaatc gtctatgcct tcgcccacgc cgatatagcg gacggggacg
     1021 gggcggtcgg aggcaagcgc ggcgaggatg ccgccttttg ccgtgccgtc tagcttggta
     1081 acaattaaac cggtcagccc caatgcgtcg tcaaaggctt tgacttggtt gacggcgttt
     1141 tgaccgatat tggcatcaag cacgacgatg atttcgtgtg gcgcgtcggg catggctttt
     1201 tgcagcacgc gtttcacttt tttgatttct tccatcaagt gaagctgcgt gggcaggcgg
     1261 ccggcggtgt cggccagcac aatgtcgatg ccgcgcgctt tggcggcttg gacggcatcg
     1321 aagcacacgg cggcggaatc gcccgtggtt tgcgaaatca cggttacgtt gttgcgttcg
     1381 ccccaagctt gaagctgctc acgcgcggcg gcgcggaaag tatcgccggc ggcaagcagc
     1441 acagatttgc cctgcgcttg gaaatatttg gcgagtttgc cgatggatgt ggttttgccc
     1501 gcgccgttga tgccagcaag catgatgaca aacggctctt tggtttcggg caaaaccagc
     1561 ggtttctcta gaggcttaat caggtcgtac aaggcttctt tcagcgcgcc gcgcaattcg
     1621 ttgccgtctt tcagcccttt gaggctgacg cggtcgcgca cgtctttcat caggtattcg
     1681 gtggcttcca tgcccatatc gctggtaatc agcacggttt ccagctcttc gtacaaatct
     1741 tcgtcgattt gtccgccgcc gaacacgccc gccagcgatt tcgccatttt gtcgcgcgat
     1801 ttggtcaaac cttgtttcaa acgcgccgcc caaccgagct tgtgttcttc agttgtcgca
     1861 acggcttctt gaacttgccc gacagcctcg ccgacggttt cggcaacggc ttcttttgcc
     1921 gcttcgactt gttccgctgc tttttccgcc gcttcctctg cttcagacag catctcggca
     1981 acggtttcct ttacctgttc aaccgcaccg ctgacggttt caacagccga ttcgacctgc
     2041 cctttgacgc tttccgttaa agattcgact tcttctttaa tattttcaac tatttgagta
     2101 acttcggatt ctgcttttgc tgcagtttcc tgaacttgag cctcctcggg agccggcgtt
     2161 tcctgttttt tcttgcgacg gaagaagctg aacattgaat tttcctttta attttagaaa
     2221 cttgaaatag ggtgtattgt agcgtatttt gcgcggcaag gttgtctgaa aatccgggct
     2281 gtaaggtttc ggcatctcaa acgtctaatc atgcaaaccg tccacacagg aaacattaaa
     2341 atgaaacacc gtactttctt ttccctttgc gccaagttcg gctgcctgct tgcgctgggt
     2401 gcttgttcgc ccaaaatcgt cgatgccgga gccgcgaccg tgccgcacac tttatccact
     2461 ttgaaaaccg cagacaaccg ccccgccagt gtttacttga aaaaagacaa accgacgctg
     2521 attaaatttt gggcaagctg gtgtcctttg tgtctgtccg aattgggaca gaccgaaaaa
     2581 tgggcgcaag atgcaaaatt cagctccgcc aacctgatta ccgtcgcgtc tccgggcttt
     2641 ttgcacgaga aaaaagacgg cgacttccaa aaatggtatg ccggtttgaa ttatcccaag
     2701 ctgcccgtcg taaccgacaa cggcggcacg atcgcccaaa gcctgaatat cagcgtttac
     2761 ccttcgtggg cgttaatcgg taaagacggc gacgtgcagc gcatcgtcaa aggcagcatc
     2821 aacgaagcgc aggcgttggc gttaatccgc gacccgaatg ccgatttggg cagtttgaaa
     2881 cattcgttct acaaacccga cactcagaaa aaggattcaa aaatcatgaa cacgcgcacc
     2941 atttacctcg ccggcggctg cttctggggc ttggaagcct atttccaacg catcgacggc
     3001 gtggttgacg cggtatccgg ctacgccaac ggcaacacga aaaatccgag ctatgaagac
     3061 gtgtcctacc gccatacggg ccacgccgaa accgttaaag tgacctacga tgccgacaaa
     3121 ctcagcctag acgacatcct gcaatatttc ttccgcgtcg ttgatccgac cagcctcaac
     3181 aaacagggca acgacaccgg tacgcaatac cgcagcggcg tgtactacac cgaccccgcc
     3241 gaaaaagccg tcatcgccgc cgccctcaaa cgcgagcagc aaaaatacca actgcccctc
     3301 gttgttgaaa acgagccgct gaaaaacttc tacgatgccg aggaatacca tcaggactac
     3361 ctgattaaaa accccaacgg ctactgccac atcgatatcc gcaaagccga cgaaccgctg
     3421 ccgggcaaaa ccaagaccgc cccgcaaggc aaaggcttcg acgcggcaac gtataaaaaa
     3481 ccgagtgacg ccgaactcaa acgcaccctg accgaagagc aataccaagt tacccaaaac
     3541 agcgcgaccg aatatgcctt cagccacgaa tacgaccatt tgttcaaacc cggcatttat
     3601 gtggacgttg tcagcggcga acctttgttc agctccgccg acaaatatga ttccggctgc
     3661 ggctggccga gcttcacgcg cccgattgat gcaaaatccg ttaccgaaca cgatgatttc
     3721 agctacaaca tgcgccgcac cgaagtgcgc agccacgccg ccgattcgca tttgggacac
     3781 gtcttccccg acggcccgcg cgacaaaggc ggactgcgct actgcatcaa cggcgcgagc
     3841 ttgaaattca tcccgctgga acaaatggac gcggcaggct acggcgcgtt gaagagtaaa
     3901 gtgaaataag ccgcaccgcc gcctaacccg acaaaatacc gtctgaaacc tgcaacgttt
     3961 cagacggtat tttttatccg gcggggattc tgtccagacg gagattttgt ttagacagca
     4021 tcgccgccgt tttcaatcag ccccgccaac cgttccaacg cgaaggcgac cgcctgcgcg
     4081 cggacggatt cgcggttgcc gtcaaaacgg cgcattgctt cgcaacttcc gcccggaaag
     4141 gcaaacccga accaaaccgt gccgacgggt ttgctttcgc tgccgccgcc cggtccggcg
     4201 atgccggaaa taccgacggc gtaatccgcc tgcgccacgg ctttcgcgcc gcgcgccatc
     4261 tcatagacgg tttggcggct gaccgcgccg tgttcgagca gggtttcggg caacacgccc
     4321 aagcggtctt ctttggcttt gttgctgtat gttacaaaac tctggtcgaa ccattgcgaa
     4381 ctgcctgcaa cgcttgtgaa tgcggcggca agcattccgc ccgtacagga ctcggcacag
     4441 cttacggttt gacgtttttt cgtcaggttt cgggcgatgg tgtgcagcgc gtccattttc
     4501 ccactcccct ttcagacggc gtttaagaat tgatgatgtg tatgtcgcgt tgcgggaacg
     4561 ggatgttgat attgactttg cggaggtttt cgaccacttg ttcgttcaaa tcgcattgca
     4621 gcgtccagcg gtctgcttcg tttgcccaag cccataatgt gatttcgatg gcattgtcgc
     4681 ccaaggcggt gatgtaggcg gcggcctgcc gctcttcgtt ttgaacgctc aaggggtgtt
     4741 cgacggcggc tttcaacacc gcctctttcg ccactttcaa atcgcagttg taatcgacgc
     4801 cgactatcac ttgggcgcgg caaagcggca gggtggaacg gttgacgatg ctgttgccca
     4861 tcaccacgct gttgggcagc acgacttctt cgttgtcggt cgtccgcaaa gaagtctgca
     4921 ccattttaat ctctcggaca tatccttcaa aaccgccgac gcggataaaa tcgccgactt
     4981 tgaacgggcg aaacaggata atcagcgcac cggcggcaaa attggacagc tggtctttca
     5041 aggacaacgc caccgccaaa cccgcgccgc cgattaaggc ggttacggat gttgtggaaa
     5101 cgcccaatct gcccaatgcg gcaataatca ccaaaatcaa taagccgata ttggcaacat
     5161 tacacaaaaa actaatcagc gtggcatcga cctgcgcgcg cgtcatcgcc gccctcatca
     5221 cggcgacaat gcgtttcgcc gcccattttc cgaccaaaaa aataagcagc gcggcggcaa
     5281 ggttcagccc gaacgcccac gccttttcag ccagatgctc ccaaccggaa acactgatca
     5341 ggtgtaaaaa atcaaattgt ttgaagtcca ttgttttcct cttgatcgaa catccgcccc
     5401 gtgcggcgta atcggcacag gtgtaaaaat gccgtatgaa gccctgcggg gcggtatgtt
     5461 tgttttattt caaaaccgtt ctaatccaac gggaaaccca tccgcgctgg ttcgcatcaa
     5521 tatcgcgctg cgcgggggcg gtggtgtgcg tcggggcttg ggcgaagcgg aacacgtcgg
     5581 gcaggcgcgt gtttttgacg gcggggtaaa cccacatttc ggacggaacc gcctgctgca
     5641 cttcccgact ttgcagccat tgcaccagtt ttgccgccag cttcggctgt ttcgcgccct
     5701 tcaagactgc cgcgccttcg acctggcgga atacgccgcc ttttaaaaac aggttgcccg
     5761 tcggcggctc gctgtatttg cctttggaaa aatacacttc cgccgccggg ctggcggcat
     5821 aaccgaccac cagcggatac gcgccgccgt tgtgcgaaaa gtcggtgtaa tacgcctcgc
     5881 tccagccttt ggcgaccttc acgccgttct gccgcatctg tgcccaccat ttgaacgcgc
     5941 cttcttcgcc cagaccgctg atgttcgcca tcaggaagcc cagccccggg gacgacgtgg
     6001 cgggagacgg cacgaccaat aggtttttat attcggggcg ggtcaaatcc tgcagggttt
     6061 gcggcagggg cagctttttg ccttcaaacc attttttgtc gtaattgatg gacacatagc
     6121 cgtaatcgac cgccaaagcc gaaggcagcc cgaccgcgac gggggcggat tcgggttgcg
     6181 ctgccgccaa aatgcccatt tcccgcgcct tgccgatatt ggcgttgtcc aaaccgtaca
     6241 ccgcgtcggc aatcgggttg gcgcggctca aaatcagttt gttgagcatt tcgttcgcgc
     6301 cgcccgcctg aataatcgac accttcgcat cgtttgcccg ctcgaagcgc gcaatcagcc
     6361 ctttgggcag gctgaacgac ttatgcaccg ccagcctgac ttccgtctgc gcctgcaggt
     6421 atgccgaaac cgccagcagc ggcagcagcc aaattttccg tttcattccg agtcctcctc
     6481 tattcgctgt aaaataacat tctaacaaat tttcacggtt caacatgcaa gaaaacccga
     6541 ccgtgtggct gttcgacctc gacaacacgc tgcacaatgc cgatgccggc atcttcacac
     6601 tcatcaaccg cgccatgaca cgctatatgg cacgccgcct caaactctcc gaatctgccg
     6661 cgtccgacct gcgtcaagac tattggcacc gctacggcgc aacgctcgcc ggactgcaaa
     6721 tccaccatcc cgaaatcgac atcgccgaat ttttgcgcga aagccatccg atcgatgcaa
     6781 tcctgactag gctgcacggc atgcctgaaa cacaaaacac cctgagccgc ctaaaagggc
     6841 gcaaggcggt tttttccaac ggcccgtcgt tttacgtccg tgccgttgtc ggcgcactcg
     6901 gtttggaaaa ccgtttcgcc gcactgttcg gcacggatga tttcggactg ctgtacaaac
     6961 ccaatccgca agcgtatctc aatgtctgcc gcctgttgga cgtaccgccc gaatgctgca
     7021 ttatggtgga cgacagcgcg gacaacctgc atcaggcaaa agcatttggc atgaaaaccg
     7081 tctggttcgg tgcaaaatcc cacgcgctgc cctttatcga cacctgcgca cgcgatatgg
     7141 cgcaactggc tcggtatgca gaaactttgt cagaacgccg ccaaaatcat tacaataccc
     7201 cctaaccccc gaaaatacga aagaaaagcc atgcgtaaaa ccttccttat cctgaccgct
     7261 gccgccgccc ttttgtcggg ctgcgcgtgg gaaacttatc aagacggcaa cggcaaaacc
     7321 gccgtccgtc aaaaatatcc cgtcggcacg cccgtttatt accaagacgg cagctactcg
     7381 aaaaatatga actacaacca ataccgcccc gaacgccatg ccgtgctgcc cgaccaaacc
     7441 ggcaacaacg ccgacgaaga gtcccgccaa cactggcaaa aaccaaagtt tcaaaaccga
     7501 taaacctacc ctatgccgtc tgaagccgct tcagacggca ttgcacagga aaccgtcatg
     7561 ccgcaaaaca ctttaaacat cgtcatcctc gccgccggca aaggcacgcg catgtattcc
     7621 aaaatgccaa aagtgctgca ccgcatcggc ggcaagccca tgctcgggcg cgttatcgac
     7681 accgccgccg cgctgaatcc gcaaaacatc tgcgtcgtcg tcggccacgg caaagagcaa
     7741 gttttagaca ccgtcaaacg cgatgtcgtt tgggtcgaac aaaccgaaca gctcggcacc
     7801 ggccacgccg tcaaaaccgc cctgccccac ctttccgccg aaggccgcac gctggtgctg
     7861 tacggcgacg ttcctttaat tgacgttgaa accctcgaaa ccctgctcga agccgcaggc
     7921 aacgaagtcg ggctgttgac cgacgtgccc gccgacccga caggattggg ccgcatcatc
     7981 cgcgacggca acggcagcgt aaccgccatc gtcgaagaaa aagacgccaa taccgcccaa
     8041 aaagccgtga aagaaaccaa cacaggcatt ctcgtcctgc ccaacgccaa actggaaaac
     8101 tggctgaaca gcctttccag caacaatgcc caaggcgaat actatctgac cgacctcatc
     8161 gccaaagccg ttgccgacgg tattaaagtt catcccgtcc aagtccgcgc ctcccacctc
     8221 gccgccggcg tgaacaacaa acgccagctc gccgaactcg aacgcatctt ccaaaccgga
     8281 caggcgcaag aattgctcaa agcaggcgtt accctgcacg acccggcacg tttcgattta
     8341 cgaggccgtc tgaaacacgg gcaagacgtc gtgattgatg tgaactgtat ctttgaaggc
     8401 gacatcgagc tcggcgacaa cgtcgaaatc ggcgcaaact gcgtcatcaa aaacgccaaa
     8461 atcggcgcaa acagcaaaat cgcccccttc tcccacctcg aaagctgcga agtcggcgaa
     8521 aacaaccgaa tcggcccgta cgcccgcctg cgtccgcaag cccgcctttc agacgacgta
     8581 cacgtcggca acttcgtcga aatcaaaaac gccgccatcg gcaaaggcac caaagccaac
     8641 cacctcacct acatcggcga tgccgaagtc ggcagcaaaa ccaacttcgg cgcgggtacg
     8701 attattgcca actacgacgg tgtgcacaaa cacaaaaccg ttatcggcga cgaagtccgc
     8761 atcggttcaa actgcgtcct agtcgccccc gttaccctcg gcaacaaagt aaccacaggc
     8821 gcaggcagca cgattacccg caatatcgaa gacaacaaac tcgccctcgc ccgcgcccgc
     8881 caaaccgtca tcgaaggctg ggtgcgtccc gaaaaagaca agcaataaag ctatgccgtc
     8941 tgaagccggt ttcaggcttc agacggcatc ccaaaaacaa acatccgata aggacggaaa
     9001 actatgtcat tacccccatg cccacaatgc gcctccgaat acacttatga agacggcgga
     9061 caatacatct gccccgaatg cgcccacgaa tggaatgaaa ccgaatccgc cgccgacctt
     9121 gcggctcaag tgcgcgatgc caacggcgcg gcgctgcaaa acggcgatac cgtcatcctc
     9181 atcaaagacc tcaaggtaaa aggcagctcg atggtgatca aacaaggtac aaaagtcaaa
     9241 ggcatacgcc tgcaggaagg cgatcacaac atcggctgca aaatcgacgg cagcgcgatg
     9301 aatttaaaat ccgaattcgt caaaaaagcc tgaccgccca aaaacaagaa acgccgtccg
     9361 aacccgtttg gcaaggttcg gacggcgttt tttatatggc ggatttatac gcccagcagc
     9421 ccttgcccca aaaagccgcc tttttccacg ccgggcaaga cgaagaaata gccgccgccg
     9481 aaggggctga tgtattcttc cagcggttcg ccgttaagga ggttttgcac gaagatgaat
     9541 ccgtcggcaa ggtttgcctg atagcagacg aacaccagcc cgacatcaag ctgtccgctt
     9601 gaggcaagtc cgcgcgaata gctgtaggcg cggcggaaga ggcggtgttt tttgaggaat
     9661 tcgggatcgc gcggattcgc caggcgtata tggctgtctt tgggcgtgat atcaccctcg
     9721 gggtctttgg caaaatccgg ttggtcggct tcttttttgc cgtccatcgg cgcaccgctg
     9781 tatttgcgcc gcccgaaaat gtcggtttgc tcttgaagcg gcgtcctgtc ccaaaactcg
     9841 acaaagtggc ggataaggcg gactgcctga tagctgccgt ttttcgccca ctcaggttcg
     9901 tctaggctgt tggcggccac acccgtccac aaaacctcgt cggcggtttt ggggtcggaa
     9961 actttggggt tgcctgtgcc gtccctgaag cccaacaggt tgcgcgccgc catcgcgccg
    10021 ggttcggatt tgggctgcca tccgtcgata ctccagcgga taacggcggt ttgggcggtg
    10081 tgtttgatga tgtcgcgcag ggcggcttgg caggtttcgg gggtgaaggc acagatttgc
    10141 aggctcaaat cgccgtcgca ccagcttttt tgcagcttat cgttggagaa gtcgcgcatt
    10201 tcctgcaaat gaatcggttt tttgtctttg agtccgaacc ggccgtcaaa caggctgctg
    10261 cccaccccca cggtaacggt caacccgtcg gggttgaagg ctttgcccaa aatgccgctg
    10321 ccggctggcg gaagtttgtc gtcgccgtct tggtattcgc cgccttgggt gagaaactcg
    10381 atgcgggcgg tcagcgtgcg gaacaggttt tccagctgct tggcactttg cgcggttacg
    10441 tcgaaggcgc acataatcga aaacgcctgc tgcggcgtaa cgatgcctgc ctgatgttcg
    10501 ccgtagcagg gataggcttg gggcgagtgt tggctttcgg cggtgcgttc ggcggtttcg
    10561 ccctgttttt tgccgccgag ataacctccg attgcgccga ctgctccggc tgcgatcgcg
    10621 gttttaaaaa gagtgcgcct ggtcggttgt gcgggttgtt ttttgctcat ggtgtttcct
    10681 tcaatatccg tgcagcagga tgggtatccc tgcacgccgt ttttccatta accgatagcg
    10741 gcaggttgaa atcctgccct gcaatatatg gcggatatag tggattaaca aaaatcagga
    10801 caaggcgacg aagccgcaga cagtataaat agtacggcaa ggcaaggcga ggcaatgccg
    10861 tactggtttt tgttaatcca ctataaaact tcagacggta tctgccgcca aataccgtct
    10921 gaacgcttgc ggcttatttc aagccgagta tgccgcgaag ttgggcaagg tcttcggcaa
    10981 gcgcgttaat agaggcctgt aacgctttgc ggtcggcttc gcccagcttg tcgtaggttt
    11041 caaaaccgtc tttagtccgg tatttcgcca gaatttcgtt gacctgtttg aagttggtat
    11101 cggttttttc caacaaggct ttgtttttgg tctcgatcag cggacggaac aaatcgacga
    11161 tttttttcga tccgtccaca ttggcttgga agtcgctcaa atcggtgtgg ctgtaccggt
    11221 cttcttcgcc gctgatttta ctgcccgcca cttcttcaat cagttcggac gcgccgccga
    11281 ccaccttgcc cggaggaaac gccaatgcgt cgatttcttt ttgcagggct tcgacatcgg
    11341 tcatcagttt cgctgcaatt tccttcacgc cggacacgtc tttttccacc caaagggcgt
    11401 attcgatacg gtggaagccg gtaaatccgg catctttcgc gccgtctttg aagtcgtctt
    11461 cacgcgcatc gatgacgggg tcgagttcgc tgaaaagctc ggcaatcggt tcgatgcgtt
    11521 cgtaatggac gcgggtgtcg gcaaacaggg atttcgcctt ttcaatgtcg cctgctttga
    11581 cggcttcggt aaaggttttg gttttcgcca ccagctcttt aacctcgcct tgaacgtagg
    11641 ctttatagtc ggcgagcggt tgggacagtt tttccaaatc cgcttcgttg gcggtgtctt
    11701 taaagccgct gtcggttacc accagcttgc cgcgcggatt ggtcaaaaga ccgcaagtca
    11761 tttcgtattc gcccggcaac agggtgacgg tcattttatc ggaaagtccg ggggcgatgt
    11821 tttcgcgctc gtccaccacc atcacgcctt tcaggatttc ccattcgagc ttgcggccgc
    11881 tgttgttttt aatattgaac acaacctgtc cgctcggcac ggtcagttcc atcggttcgc
    11941 aggcattgtc gttgacggcg atactgaccg aaccgccctc gttggcggtt tgcgcctcac
    12001 cggacgcggc cggcgcagct ttctccgcct ccggcggctg gcacgcggtc aaacctaagg
    12061 caagcatcac ggacaatgcg gtcaaattga attttctcat ttcagctcct ctttacgggt
    12121 taaagtttca gacggcctgc tgccgcacaa aaaccaagtc atgacgggaa taaggtacag
    12181 cagccaaacc aaggcctcgc cctgcgtcgg atggtcggta tagccgaaaa atccgccgag
    12241 cagcacacct aacggactgt cttcgtgcaa atattttgat gagtcgaaca caatgtcctg
    12301 aagcgcgttc caaatgcctg cttcgtgcag cgcgcgcagc gagccggcaa gcaggccggc
    12361 ggcaacgaca atcagaaacg cccccgtcca acggaaaaac ttcgccagat tcaggcgcat
    12421 cccaccctga taaatcaacg cgccaatcac ggcggcagcc aaaacccccg ctaccgcacc
    12481 ggccggcatc tgccaagtcg ggctctgttt gaatacggca agcagaaaaa aaacgctctc
    12541 caaaccttcg cgcgccacgg caagaaacgc cataccgacc aaggcccatc cttgtccgct
    12601 gccccggttc aaagccgcct gcacagaatc ctgaagctgc tgcttcatcg aacgcgccgc
    12661 ctttttcatc cataaaacca tataagtcag catcgcgacg gcaaccaggc cgataatgcc
    12721 gacgacgaac tcctgctgct tttggggaat ctcgcccgtt gccgaatgga tgccgtaccc
    12781 cagccccaaa cacatcaaag aagcaaggac gaccccgaac cagaccttag gcatcagttt
    12841 ggaatgtccg gactgtttca gaaaaccggc aacgatgccg acaatgagcg cggcttcgat
    12901 accctcgcgc aacataatta aaaaagcgac cagcataaac gcgaacgaac aaggatgatg
    12961 aataatatat tatcggaata ttttcattgc ttgtaaatac aaatgcaagt tatttttatc
    13021 tgcagtaccg cgcggcggaa agttccgcag gctgcagctg cgccctgtgt taaaatcccc
    13081 tctccacggc tgccgcaacg ccgcccgaaa ccatctttct tattactgcc ttattactgc
    13141 cggcaacatt gtccattatg aaaaaatacc tattccgcgc cgccctgtac ggcatcgccg
    13201 ccgccatcct cgccgcctgc caaagcaaga gcatccaaac ctttccgcaa cccgacacat
    13261 ccgtcatcaa cggcccggac cggccggtcg gcatccccga ccccgccgga acgacggtcg
    13321 gcggcggcgg ggccgtttat accgttgtac cgcacctgtc cctgccccac tgggcggcgc
    13381 aggatttcgc caaaagcctg caatccttcc gcctcggctg cgccaatttg aaaaaccgcc
    13441 aaggctggca ggatgtgtgc gcccaagcct ttcaaacccc cgtccattcc tttcaggcaa
    13501 aacagttttt tgaacgctat ttcacgccgt ggcaggttgc aggcaacgga agccttgccg
    13561 gtacggttac cggctattac gaaccggtgc tgaagggcga cgacaggcgg acggcacaag
    13621 cccgcttccc gatttacggt attcccgacg attttatctc cgtccccctg cctgccggtt
    13681 tgcggagcgg aaaagccctt gtccgcatca ggcagacggg gaaaaacagc ggcacaatcg
    13741 acaatgccgg cggcacgcac accgccgacc tctcccgatt ccccatcacc gcgcgcacaa
    13801 cggcaatcaa aggcaggttt gaaggaagcc gcttcctccc ctaccacacg cgcaaccaaa
    13861 tcaacggcgg cgcgcttgac ggcaaagcac cgatactcgg ttacgccgaa gaccccgtcg
    13921 aactcttttt tatgcacatc caaggctccg gccgtctgaa aaccccgtcc ggcaaataca
    13981 tccgcatcgg ttatgccgac aaaaacgagc atccgtatgt ttccatcgga cgctatatgg
    14041 cggataaggg ctacctcaaa ctcggacaaa cctcgatgca gggcatcaaa gcctatatgc
    14101 ggcaaaatcc gcaacgcctc gccgaagttt tgggtcaaaa ccccagctat atctttttcc
    14161 gcgagcttac cggaagcggc aatgacggcc ctgtcggcgc actgggcacg ccgctgatgg
    14221 gggaatatgc cggcgcagtc gaccggcact acattacctt gggtgcgccc ttatttgtcg
    14281 ccaccgccca tccggttacc cgcaaagccc tcaaccgcct gattatggcg caggataccg
    14341 gcagcgcgat taaaggcgcg gtgcgcgtgg attatttttg gggatacggc gacgaagccg
    14401 gcgaacttgc cggcaaacag aaaaccacgg gttacgtctg gcagctccta cccaacggta
    14461 tgaagcccga ataccgcccg taaaccggaa aacaatgcca tctgaagccc atccctaggc
    14521 aatcgggcgc attaaggcga agttttgcga taccgcaggc acaagccggc cggtcggaca
    14581 aaacgccttt cttatttgac gg
//
LOCUS       DAXHPV010000037        14160 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.037, whole genome shotgun sequence.
ACCESSION   DAXHPV010000037 DAXHPV010000000
VERSION     DAXHPV010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14160
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.037"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(242..1048)
                     /locus_tag="ACFM6C_000827"
     CDS             complement(242..1048)
                     /locus_tag="ACFM6C_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HFC6158311.1"
                     /translation="MWHWDIILILLAVGSAAGFIAGLFGVGGGTLIVPVVLWVLDLQG
                     LAQHPYAQHLAVGTSFAVMVFTAFSSMLGQHKKQAVDWKTVFAMMPGMVFGVFTGALS
                     AKYIPAFGLQIFFILFLTAVAFKTLHTDPQTASRPLPGLPGLTAVSTLFGAMSSWVGI
                     GGGSLSVPFLIHCGFPAHKAIGTSSGLAWPIALSGAISYLLNGLNIAGLPEGSLGFLY
                     LPAVAVLSAATIAFAPLGVKTAHKLSSAKLKKSFGIMLLLIAGKMLYNLL"
     gene            complement(1049..1795)
                     /gene="pssA"
                     /locus_tag="ACFM6C_000828"
     CDS             complement(1049..1795)
                     /gene="pssA"
                     /locus_tag="ACFM6C_000828"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003882 - CDP-diacylglycerol-serine
                     O-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HFC6158312.1"
                     /translation="METPTNTPQRSLRQNSIYLLPNSFTIAALFSAFYAITQSMHGRY
                     ETAAIAVFISMLLDGMDGRVARLTNSQSAFGEQLDSLADMVSFGVAPALIAYKWQLWQ
                     FGKIGYSVAFIYCACAALRLALFNTLIGKVDKRWFIGVPSPTAAALIVGLIWVNHSVE
                     KFPAVHWWALGITLFAGLSMIVQIPFWSFKEINIRRQVPFVGMLLAVLLLLLVTWEPS
                     LVLFLFFLGYSLSGYIMAARRFWKKYRKAD"
     gene            complement(1869..1994)
                     /locus_tag="ACFM6C_000829"
     CDS             complement(1869..1994)
                     /locus_tag="ACFM6C_000829"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158313.1"
                     /translation="MPSNNIHPAKIRNNTPGGRQSQTAPQSIRHQKNKPPPRASS"
     gene            2378..2860
                     /locus_tag="ACFM6C_000830"
     CDS             2378..2860
                     /locus_tag="ACFM6C_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4189 domain-containing protein"
                     /protein_id="HFC6158314.1"
                     /translation="MMKKILAVSALCLMTAAARAADTYGYLAVWQNPQNADDVLQVKT
                     TKEDSTKSEAFAELEAFCKGQDTLAGIAEDEPTGCRSVVSLNNTCVALAYPKALGAMR
                     VENAVVITSPRFTSVHQVALNQCIKKYGAQGQCGLETVYCTSSSYYGGTVRSLIQNLK
                     "
     gene            complement(2912..4123)
                     /locus_tag="ACFM6C_000831"
     CDS             complement(2912..4123)
                     /locus_tag="ACFM6C_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-xanthine permease family protein"
                     /protein_id="HFC6158315.1"
                     /translation="MNQLKLAVSGAQILFVAFGAMVLVPLLTGLNPALALLGAGLGTL
                     LFQITTKRKVPIFLGSSFAFIAPIIYSVGEWGLPSTMFGLFAAGFMYFVFAALIRWRG
                     LAAVHKLLPPVVIGPVIMVIGLSVAVAASSMAMGQADGKQVIDYTDSLILSGFTFAVT
                     AIVSVFGSRMMKLIPILIGVASGYVLALLMGLVDTASIAHAPWFAVPHFETPQINWQA
                     ALFMLPVAVAPAIEHIGGIMAIGNVTGKDYTKDPGLDKTLAGDGLGVCVAGLIGGPPV
                     TTYGEVTGAVMITKNSNPVIMTWAAVFAVCMAFFGKFNAFLASIPMPVMGGIMLLLFG
                     TIASLGVKTLIDAKVDLMLPKNLVIVSSVLTTGIGGMTLKLGSFSFAGVGLCAVLAIM
                     LNSLLPDPKES"
     gene            4346..6784
                     /locus_tag="ACFM6C_000832"
     CDS             4346..6784
                     /locus_tag="ACFM6C_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HFC6158316.1"
                     /translation="MTEKSHKKTVKGRAGSPSPMSARNKKADNGARGNKVSERLKAVK
                     ELQKTEAKKARPEHVVNLIGDALWLMGLAATLYLAISLISFDMSDPSWSHSSPVAGDA
                     ANWGGLFGAYVADVGYYLFGWSFWWWIAAACVMLYKNFRLHAKRTENEAYNHKIAAAA
                     LFVLTVFSPVLEYFVLGGKYADSLPVGAGGMVGIRVGAVFAWLLGRSGSLLIILVVLL
                     LSLSLLVQISWLEFLNGAGRAVQNRLSALSGKVMALGKRRPNSKTDGVDTQNTRRMVK
                     EAKNITAKPVALPEGSSSNRKSVAVSVAPSPKIQVSLFEDDEPRQAGEYHKPTLNLLR
                     IPDSEPVSINPAELERTAELIESKLAEFGIGVQVVSATSGPVITRYEIEPAQGVKGSQ
                     IVALSKDLARSMSLQSVRIVETIAGKNTMGIELPNDKRQDVMLSEILSSPVFAGAKSK
                     LTVALGKDIAGTPVVGDLAKMPHLLVAGMTGSGKSVGVNGMIMSMLFKATPDEVRFIM
                     IDPKMLELSIYDGIPHLLCPVVTDMREAGQALNWCVAEMEKRYRLLSHVGVRNLEGFN
                     QKVEAAKAAGKPLLNPFSLNPDEPEPLEKLPLIVVVIDELADLMMTERKAVEQQIARL
                     AQKARAAGIHMIVATQRPSVDVVTGLIKANIPTRMAFTVQSKIDSRTILDQMGADELL
                     KYGDSLFLQPGSAEPTRLQGAFVSDDEVHQVVNYVKSQAPADYIEGLLSGEAALETAN
                     IVNPNADSDELFDQAVAYVLESKKTSISSLQRQLRIGYNRAANLMEALENAGVVSPTD
                     LNGSRKILAHKDHL"
     gene            6992..8302
                     /gene="tig"
                     /locus_tag="ACFM6C_000833"
     CDS             6992..8302
                     /gene="tig"
                     /locus_tag="ACFM6C_000833"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003742150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005854 - nascent polypeptide-associated
                     complex [Evidence IEA];
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0051083 - 'de novo' cotranslational protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HFC6158317.1"
                     /translation="MSVTVETLENLERKVVLSLPWSEINAETDKKLKQTQRRAKIDGF
                     RPGKAPLKMIAQMYGASAQNDVINELVQRRFYDVAVAQELKVAGFPRFEGVEEQDDKE
                     SFKVAAIFEVFPEVVIGDLSAQEVEKVTASVGDAEVDQTVEILRKQRTRFNHVEREAR
                     NGDRVIIDFEGKIDGEPFAGGASKNYAFVLGASQMLPEFEAGVVGMKAGESKDVTVNF
                     PEDYHGKDVAGKTAVFTITLNNVSEATLPEVDADFAKALGIADGDVAKMREEVQKNVS
                     REVERRVNEQTKESVMNALLKAVELKAPVALVNEEAARLANEMKQNFVNQGMADAANL
                     DLPLDMFKEQAERRVSLGLILAKLVDENKLEPTEEQIKAVVANFAESYEDPQEVIDWY
                     YADPSRLQAPTSLAVESNVVDFVLGKAKVNEKALSFDEVMGAQA"
     gene            8398..9012
                     /gene="clpP"
                     /locus_tag="ACFM6C_000834"
     CDS             8398..9012
                     /gene="clpP"
                     /locus_tag="ACFM6C_000834"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HFC6158318.1"
                     /translation="MSFDNYLVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDES
                     ANLVVAQLLFLESENPDKDIFFYINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAAS
                     MGAFLLSAGEKGKRFALPNSRIMIHQPLISGGLGGQASDIEIHARELLKIKEKLNRLM
                     AKHCGRDLADLERDTDRDNFMSAEEAKEYGLIDQVLENRASLQL"
     gene            complement(9065..10330)
                     /gene="ispG"
                     /locus_tag="ACFM6C_000835"
                     /gene_synonym="gcpE"
     CDS             complement(9065..10330)
                     /gene="ispG"
                     /locus_tag="ACFM6C_000835"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity (ferredoxin) [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HFC6158319.1"
                     /translation="MNTLQRRKTHQVRIDHITVGSEAPVVIQSMTNTDTADAKATALQ
                     IKELSDAGSEMVRITVNSPEAASKVAEIRRRLDDMGYATPLIGDFHFNGERLLAEFPE
                     CGKALSKYRINPGNVGKGVKGDEKFAFMIRTAAENDKAVRIGVNWGSLDQSLAKRMMD
                     ANLASSAPKPPEEVTKEALIVSALESAEKAVLLGLPEDKIILSCKVSAVQDLIQVYRE
                     LGSRCAYPLHLGLTEAGMGSKGIVASTAALSVLLQEGIGDTIRISLTPEPGSPRTQEV
                     VVGQEILQTMGLRSFTPMVTACPGCGRTTSTVFQELAQDVQNYLRQKMSIWRTLYPGV
                     ESLNVAVMGCVVNGPGESKLADIGISLPGTGETPVAPVYVDGERKVTLKGDNIATEFL
                     AIVEEYVKTNYGENGSKRNQNKIIPIQSL"
     gene            complement(10346..11107)
                     /gene="pilW"
                     /locus_tag="ACFM6C_000836"
     CDS             complement(10346..11107)
                     /gene="pilW"
                     /locus_tag="ACFM6C_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis/stability protein PilW"
                     /protein_id="HFC6158320.1"
                     /translation="MPFKPSKRISLLLVLALGACSTSYRPSRAEKANQVSNIKTQLAM
                     EYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD
                     SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA
                     EAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWK
                     IAKALGNAQAAYEYEAQLQANFPYSEELQTVLIGQ"
     gene            complement(11110..12204)
                     /gene="rlmN"
                     /locus_tag="ACFM6C_000837"
     CDS             complement(11110..12204)
                     /gene="rlmN"
                     /locus_tag="ACFM6C_000837"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016433 - rRNA (adenine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0030488 - tRNA methylation [Evidence IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HFC6158321.1"
                     /translation="MKTNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFDE
                     MTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRKWLLDVGTGNGVETVFIPESDRGT
                     LCISSQVGCALECTFCSTGRQGFNRNLTSAEIIGQLWWANKAMGVTPKNERVISNVVM
                     MGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVS
                     LHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHAR
                     ELIELVTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDI
                     DAACGQLAGQVQDKTRRQQKWQQILIGQQG"
     gene            complement(12347..12772)
                     /gene="ndk"
                     /locus_tag="ACFM6C_000838"
     CDS             complement(12347..12772)
                     /gene="ndk"
                     /locus_tag="ACFM6C_000838"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HFC6158322.1"
                     /translation="MAIERTISIIKPDAVGKNVIGKIYSRFEENGLKIVAAKMKQLTL
                     KEAQEFYAVHKDRPFYAGLVEFMTGGPVMIQVLEGENAVLKNRELMGATNPSEAAEGT
                     IRADFATSVSINAVHGSDSVENAALEIAYFFSQTEICPR"
     gene            complement(12831..13982)
                     /gene="zapE"
                     /locus_tag="ACFM6C_000839"
     CDS             complement(12831..13982)
                     /gene="zapE"
                     /locus_tag="ACFM6C_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HFC6158323.1"
                     /translation="MSNRDQLFKAPPFENHSPLTWYQAASQLPNFIRDDAQAAAIEHL
                     DRLWTELMMFKRKRNRFLGRSLRSPQVPKGLYFYGGVGRGKSFLMDAFFGCLPYRRKR
                     RVHFHAFMAEIHQRLKTLKSESNPLKSVAAEIAKETRVLCFDEFHVSDIADAMILGRL
                     LENLLNEGVVLVATSNYAPSELYPQGQNRSSFLPTIALIESSLTVLNVDGGEDYRLRT
                     LRPAEIFFTPANEENEAKLAKLFKEMTGITDLNPGISTIHGREIPHKAESGRAIWFDF
                     RALCFGPRSQSDYLYLAEHYEMVFISGLEQLSPQEKAEARRLTWLIDVLYDFRVKLCA
                     TGAVDVNHIYTEGDFAEEFTRTASRMVEMQSEVYLEQPHLTLSPKASGG"
BASE COUNT         3447 a         3485 c         3899 g         3329 t
ORIGIN      
        1 gtttgggagg cagccgcatc gcgtggaatc ggcacggcag gcgatgcgcc gatgccttcg
       61 ggcgtgaagg cggggcaatc ggcagtttgg aaaaaggcaa tggaatctgt gggcagaaga
      121 agttaagggt aaaagtcggg cgcacggtca ggttgtctgt ccttttgtcg gaacaggaga
      181 ctgggcagct ttgtcctgat taattgcttg tgcaaacggt aaaaaggttt tttcgtgtgt
      241 tttaaagcag gttgtacagc atttttccgg caatcaaaag caacataatg ccgaaggatt
      301 ttttgagttt ggcagaagaa agtttgtggg cggttttgac accgagcggg gcaaaggcaa
      361 tggttgccgc gctgaggacg gcgacggcgg gcaggtaaag gaagcccagt gacccttcgg
      421 gcaatcctgc aatattcagg ccgttgagca gatacgatat tgcgccggag agtgcaatcg
      481 gccaggcaag gccggatgat gtgccgatgg ctttatgggc ggggaagccg cagtggatta
      541 agaaggggac ggaaagtgaa ccgccgccta tgccgaccca gctcgacatt gcgccgaaca
      601 gtgtggaaac cgcagtcagt ccgggcagtc cgggcagcgg gcgggatgcc gtctgagggt
      661 cggtatgcag tgttttgaat gcgacggcgg ttaaaaacag gatgaagaaa atttgaagcc
      721 cgaacgcggg gatatatttt gcggagagtg cgcccgtgaa tacgccgaat accatacccg
      781 gcatcatcgc aaatacggtt ttccagtcga ccgcctgttt tttgtgctgc cccagcatac
      841 tggaaaaggc ggtgaagacc atgacggcga aggatgtgcc gacggcgagg tgttgcgcgt
      901 aaggatgttg tgccaaaccc tgcaaatcaa gcacccataa aacgacaggg acaatcagcg
      961 tgccgccgcc tacgccgaac aggccggcaa taaaacctgc cgcactgcct acggcaagca
     1021 ggattaagat aatgtcccaa tgccacattt aatccgcctt tctgtatttt ttccaaaatc
     1081 ggcgtgccgc cataatgtag ccggacaggc tgtatccgag aaagaacagg aagaggacga
     1141 gcgacggttc ccaagtgacc agaagcagca gtaagacggc aagcagcatt ccgacaaagg
     1201 ggacttgtct gcggatgttg atttctttaa aactccaaaa agggatttgg acaatcatcg
     1261 acaggccggc aaacagtgtg atgcccaatg cccaccagtg gacggcgggg aatttttcga
     1321 cgctgtggtt gacccaaatc agcccgacaa tcagcgcggc ggcagtcgga ctgggcacgc
     1381 cgataaacca gcgtttgtcc accttgccga tgagcgtgtt gaacagggcg aggcgcaggg
     1441 cggcgcaggc gcagtagatg aaggcgacgg aataaccgat tttgccgaac tgccaaagct
     1501 gccatttgta ggcaatcaga gcgggagcaa cgccgaagct gaccatatcg gcaaggctgt
     1561 cgagctgctc cccgaacgcg ctttggctgt tggtcagccg cgccacgcgc ccgtccatac
     1621 cgtccagcag catagagatg aataccgcga tggcggcggt ttcataacgt ccgtgcatgg
     1681 attgggtgat tgcgtaaaat gcggaaaaca gcgcggcgat ggtaaaggag ttgggcagca
     1741 ggtagatact gttttgacgc agggagcgtt gcggggtgtt ggtcggggtt tccatagctg
     1801 aagtgtctca cggacgtgga gaatcgatag gggattataa cccaaaccat tatcgaacaa
     1861 tacgcccttt aggatgaagc cctcggaggc ggtttgtttt tctgatggcg gatgctttgc
     1921 ggggcggttt gactctgcct gccaccgggt gtgttgtttc ggatttttgc cggatggata
     1981 ttgttgctgg gcatttctgg gcttgccgga aggtatcggg gggagggcat cggaatatgc
     2041 ggcgcaccgt tcaaaccggg gcggcgtttc cctattttca gggggttgca ggtttcaaca
     2101 aattgaaaga tattttttgc atttccgacc gtatgctgat tttgaagcgg gataaattat
     2161 aggacaaggt ttttcgcccg ccgcaaaggt tggccgcaat gccgtctgaa aacaacggct
     2221 tgccgctaag gcggcggtat gcggatttgc gctgccgaaa tcggtttgcc atacccggcg
     2281 gtgcaatctg cggggaggga taagccgata aggcgggact tatcctgttt tttgtttata
     2341 atgcaacaga atttggacga accgtcggga atttatcatg atgaaaaaga tactggccgt
     2401 atcggcacta tgcctgatga ctgcggcggc acgggctgcc gatacttacg gctatctcgc
     2461 cgtttggcag aatccgcaga atgcggacga tgttttgcag gttaaaacca caaaagaaga
     2521 ttcgacgaaa agcgaagcgt ttgccgagtt ggaagccttc tgtaaaggtc aggacacgct
     2581 tgcgggcatt gctgaagacg agccgaccgg atgccggtcg gtcgtgtcgc tgaacaatac
     2641 ctgtgttgcg ctggcatacc cgaaagcctt gggtgcgatg cgcgttgaaa acgccgtcgt
     2701 gattacttct ccgcgtttta cgagcgttca tcaggtcgca ctcaaccagt gcatcaaaaa
     2761 atacggcgca cagggacaat gcggcttgga aacagtgtat tgcacatctt cttcttatta
     2821 cggcggaact gtgcgctctt tgattcaaaa tctcaaataa aacgggaaat gccgtctgaa
     2881 agatgttcag acggcatttc tatatcgacg gtcaggattc tttcggatcg ggcagcaggc
     2941 tgttcaacat aatggcaagt acggcgcaca agcccacgcc ggcaaagctg aagctgccca
     3001 atttgagcgt catgccgccg atgcccgtgg tcagtaccga gctgacgatg accaggtttt
     3061 tcggcagcat caaatcgact ttggcatcaa tcagcgtttt cacgcccaaa gaagcaatcg
     3121 tgccgaacag cagcagcata atgccgccca ttactggcat cggaatggaa gccaaaaacg
     3181 cattgaattt gccgaaaaac gccatgcaga cggcaaaaac cgccgcccaa gtcatgatga
     3241 cggggttact gtttttggta atcatcaccg cacccgttac ttcgccgtag gtcgtaaccg
     3301 gcgggccgcc gatcagaccc gcaacgcaca cgcccaaacc gtcgcctgca agggttttgt
     3361 ccaagcccgg gtctttcgta tagtctttcc ccgtcacatt gccgattgcc atgatgccgc
     3421 cgatgtgttc gatggcgggg gcgacggcaa cgggcagcat aaacagtgca gcctgccagt
     3481 tgatctgagg cgtttcaaaa tggggaacgg cgaaccaggg cgcgtgtgca atgcttgccg
     3541 tgtccaccag tcccatcagc agtgccaaaa cataacccga agcgacaccg atcaagatgg
     3601 gaatcagctt catcatcctg ctgccgaaaa ccgatacgat ggcggtaacg gcaaaggtaa
     3661 agccggaaag aatcagcgaa tcggtatagt cgatgacctg tttgccgtcc gcctgaccca
     3721 ttgccatgct gcttgccgcc acggcaacag acagaccgat gaccatgatg acggggccga
     3781 tgacgaccgg aggcagcagt ttgtgtaccg ctgccagtcc gcgccaacgg atcagcgcgg
     3841 caaacacaaa atacataaag ccggcggcaa acagtccgaa catggtggaa ggcagccccc
     3901 attcgccgac ggagtagata atcggtgcga taaaggcaaa cgaagaacca agaaaaatcg
     3961 gcactttgcg tttggttgtg atttggaaca gcagcgttcc caagcctgcg cccaaaagcg
     4021 caagagccgg attcagaccg gtcagcaggg gaaccagcac cattgcgccg aatgccacaa
     4081 ataaaatctg tgcaccggaa acggcaagtt tcagttggtt cataccatcg tctttcagtc
     4141 ggttcaaacg gcacggatta tactggtttg ccgagggtct gcgtaaaaat acatacgtcg
     4201 ggcaacagat atgccgtctg aaaggcaacg tttgtctgtt gcaggatgaa agcaggagaa
     4261 atggagtata atccgacact ttccatattc aatccgcaag ccgtccggcc tccttatttc
     4321 agacggcatt ttccggtaat acggcatgac agaaaaatcc cataaaaaaa cagtaaaagg
     4381 cagggcggga agcccgtccc caatgtccgc acgcaacaag aaagccgaca acggcgcacg
     4441 gggcaataaa gtttccgagc ggctcaaggc ggtcaaagag ttgcagaaaa ccgaagccaa
     4501 aaaggcgcgt cccgaacatg tcgtcaacct tattggcgac gcgctgtggt tgatgggttt
     4561 ggcggcaacc ctgtatttgg cgatttccct gatcagtttc gatatgagcg atccgtcttg
     4621 gtcgcacagt tcgccggttg ccggagatgc cgccaattgg ggcggactgt tcggcgcgta
     4681 tgttgccgat gtcggctatt atcttttcgg ctggtcgttc tggtggtgga tagcggctgc
     4741 ctgcgtcatg ctgtataaaa atttccgtct gcacgcaaaa cggacggaaa acgaggcata
     4801 caaccacaaa atcgctgccg ccgcgctgtt tgtcctgacg gtcttcagcc ccgtcttgga
     4861 gtattttgtg ctgggcggaa aatatgccga ctccctgcct gtcggagcag gcggtatggt
     4921 cggcatacgc gtcggcgcag tgtttgcgtg gctgttgggg agatcgggca gcctgctgat
     4981 tatcttggtt gttctgctgt tgtcgttgtc cctgctggtg cagatttcat ggctggaatt
     5041 tttgaacggt gcgggcaggg cggttcaaaa ccgcctgagt gccttatccg gcaaggtcat
     5101 ggctttagga aaacgccggc cgaatagcaa aacagacggt gtcgataccc aaaatacacg
     5161 gcgcatggta aaagaagcca agaatattac ggccaaaccc gttgccttgc ccgaaggcag
     5221 cagcagcaac cgcaaatccg tcgcggtttc cgtcgcgccg tcgcccaaaa ttcaggtttc
     5281 tctgtttgaa gatgacgaac ctcggcaggc gggcgaatac cacaagccta cattgaacct
     5341 attgcggatt cctgacagcg aacccgtcag catcaatccc gccgaattgg agcgcactgc
     5401 cgaactgatc gaatccaaac tggcagaatt cggcatcggc gtacaagtcg tatccgccac
     5461 atccggcccc gtcatcacgc gctacgaaat cgaacccgcg caaggtgtta aaggcagcca
     5521 aattgttgcc ttgtcgaaag atttggcacg ctctatgtcg ctgcaatccg tgcgtatcgt
     5581 cgaaaccatc gcaggtaaaa acacgatggg catcgagttg cccaacgaca aacgccaaga
     5641 cgtgatgttg agcgaaatct tgtcctcgcc cgtgtttgcc ggagccaaat ccaagctgac
     5701 cgtcgcgctg ggcaaagaca ttgccggtac ccccgttgtc ggcgacttgg cgaaaatgcc
     5761 gcaccttttg gtcgccggta tgactggttc gggcaagtcc gtcggcgtga acggcatgat
     5821 tatgtctatg cttttcaaag ctacgcccga cgaagtccgc ttcattatga tagacccgaa
     5881 aatgctcgag ttgagcattt acgacggcat tccgcacctg ctctgtcccg tcgtgaccga
     5941 tatgcgcgaa gcagggcagg cgttgaactg gtgcgtcgcc gaaatggaaa aacgctaccg
     6001 cctgctttcc cacgtcggtg tacgcaatct ggaaggcttc aaccaaaaag tcgaagccgc
     6061 aaaagcggca ggcaagccgc tgctcaatcc gttcagcctg aaccccgacg agcccgagcc
     6121 gctggaaaaa ctgccgttga ttgtggtcgt tatcgacgag ttggcagacc tgatgatgac
     6181 cgaacgcaaa gccgtcgaac agcaaatcgc ccgtctcgcc caaaaagcgc gcgccgccgg
     6241 tatccatatg attgtcgcga cccaacgtcc cagcgtcgat gtcgttaccg gcctgattaa
     6301 agccaacatc ccgacgcgta tggcgtttac cgtgcaaagc aaaatcgaca gccgtaccat
     6361 cctcgaccaa atgggcgcgg acgaactgct caaatatggc gattcgctgt tcctccagcc
     6421 cggcagtgcc gaaccgaccc gcctgcaagg cgcgtttgtt tcagacgacg aagtacatca
     6481 agtcgtcaac tacgtcaaat cgcaagcccc agccgactat attgaaggtc tgctcagcgg
     6541 cgaggccgcg ctggaaactg ccaatatcgt taatccgaat gcagacagcg acgaattgtt
     6601 cgatcaggca gtcgcctatg ttttggaaag caaaaaaacc tccatttcgt ctttgcagcg
     6661 gcagttgcgt atcggctata accgcgcggc aaacctgatg gaggcactgg aaaatgcggg
     6721 tgtcgtttct cccaccgacc tcaacggcag ccgtaaaatt ttggcgcaca aggaccattt
     6781 gtagcccgta ttgcaaaatg ccgtctgaac ggcggaattg gcgtttcaga cggcatatta
     6841 tgtttcaggc gaaacattgt gatatacttg ccagctaaaa tttccccttt gcggcaatgc
     6901 ggttcaaata tcgtaccgtt gcgctgtttg cttccccatg tagggaagaa agtttatcat
     6961 tttatcaaca caacaaattt aagggcttat gatgagcgta actgttgaaa ctttagaaaa
     7021 tctggaacgc aaagtagtgt tgtccctgcc ttggtccgaa atcaacgcag aaaccgataa
     7081 aaaactgaaa caaacccaac gccgtgcaaa aatcgacggt ttccgtccgg gtaaagcacc
     7141 tttaaaaatg attgcccaaa tgtacggtgc gagcgcacaa aacgacgtga tcaacgagct
     7201 ggtgcaacgc cgcttctacg atgttgccgt tgcccaagag ttgaaagtgg caggcttccc
     7261 ccgttttgaa ggcgttgaag aacaagacga taaagagtct ttcaaagttg ccgccatttt
     7321 tgaagtgttc cccgaagtcg ttatcggcga tttgtctgca caagaagttg aaaaagtaac
     7381 cgcttccgtc ggtgatgccg aagtggacca aaccgtagaa atcctgcgca aacaacgcac
     7441 ccgcttcaac catgtcgaac gcgaagcccg aaacggcgac cgcgtcatca ttgactttga
     7501 aggcaaaatc gacggcgaac cttttgccgg cggcgcatcc aaaaactacg ccttcgtatt
     7561 gggcgcaagt caaatgctgc ctgaatttga agccggcgta gtcggcatga aggctggcga
     7621 aagtaaagac gttaccgtca atttccctga agactaccac ggtaaagacg ttgccggtaa
     7681 aactgccgtg ttcaccatta cgctgaacaa cgtttccgaa gcgactctgc ctgaagtcga
     7741 tgcagatttt gcaaaagcct tgggtattgc ggatggcgac gttgccaaaa tgcgcgaaga
     7801 agtgcagaaa aacgtaagcc gcgaagtgga acgccgcgta aacgaacaaa ccaaagaatc
     7861 cgtaatgaac gcgctgctca aagccgtaga gctgaaagca cctgttgctt tggtcaatga
     7921 agaagccgca cgcttggcaa acgaaatgaa acaaaatttt gttaaccaag gtatggctga
     7981 tgctgccaac ttggatctgc ctttggatat gttcaaagaa caagccgaac gccgcgtatc
     8041 tttaggtctg attttagcca aactggttga cgaaaacaaa ctggaaccga ctgaagagca
     8101 aatcaaagcc gttgttgcca actttgcaga aagctacgaa gatcctcaag aagtgattga
     8161 ctggtactac gcagatcctt cccgcctgca agccccgact tctttggcgg tagaaagcaa
     8221 cgtcgttgat ttcgttttgg gtaaagccaa agtaaacgaa aaagctttgt cttttgacga
     8281 agtgatgggc gcgcaagcct gattatcctg aaaatgccgt cttagggcag tttttgaaag
     8341 caccgaagcc gcttttaaag cccgctttgg tgcttttaca tcatgaaagg agacgaaatg
     8401 tcttttgata actatcttgt ccctaccgtt atcgagcaga gcggtcgcgg tgagcgtgca
     8461 ttcgatatct attctcggct tttgaaagag cgcatcgtat tcttggtcgg cccggtaacc
     8521 gacgagtccg ccaatctggt ggttgcccaa ctgttgtttt tggaaagtga gaatccggat
     8581 aaggatattt tcttctatat taactcgcca ggcggttcgg taacggccgg tatgtcgatt
     8641 tacgacacca tgaattttat caagcccgat gtatcgactt tgtgcttggg gcaggcagca
     8701 agtatgggcg cgttcttatt gtcggcaggc gaaaaaggca aacgtttcgc cctgcccaac
     8761 agccggatta tgattcacca gcctttaatc agcggcggct tgggcggtca ggcatccgat
     8821 attgaaattc acgcacgcga actgttgaaa atcaaagaaa aactcaaccg cctgatggcg
     8881 aaacattgcg gccgcgattt ggcagatttg gagcgcgaca ccgaccgtga taatttcatg
     8941 tctgccgaag aagcaaaaga atatggtttg atcgaccaag ttttggaaaa ccgcgcttct
     9001 ttgcagcttt aaaccttgtg aagtagacaa atgccgtctg aaaacagttc agacggcatt
     9061 tgtcttatag ggactgtatt gggatgattt tgttctggtt gcgtttggag ccgttttcgc
     9121 cgtagttggt tttgacatac tcttcaacaa tagccaaaaa ttccgttgca atgttgtcgc
     9181 ctttcagcgt tactttgcgt tcaccatcta cataaacagg cgcgacgggt gtttcccccg
     9241 taccgggcag gctgatgccg atgtcggcca atttgctttc tccgggccca ttgacaacgc
     9301 agcccattac ggcaacgttc agggattcaa ccccgggata aagggtacgc catatagaca
     9361 ttttttggcg caggtaattt tgaacatctt gtgccagctc ttgaaatacg gtactggtgg
     9421 tacgcccgca gccggggcag gcggtaacca tcggcgtaaa cgaacgcaat cccatagtct
     9481 gtaaaatctc ttgcccgacg acgacctcct gagtacgcgg gctgccaggt tccggagtca
     9541 gtgaaatgcg gatggtgtcg ccgattcctt cttgaagcaa gacggataat gccgccgttg
     9601 atgcgacaat gcctttgctg cccataccgg cttcggtcaa acccaaatgc agcggatagg
     9661 cgcaacggct gcccagttcg cggtaaacct gaatcaaatc ctgaaccgcg ctgactttgc
     9721 acgacaggat gattttgtct tcgggcagtc ccaatagaac ggctttttcg gcagattcca
     9781 aagcggagac aatcagtgct tccttcgtca cttcttcggg cggtttcggc gcggaagaag
     9841 cgaggttggc atccatcata cgtttggcga ggctttgatc caaagaaccc cagtttacgc
     9901 cgatgcggac ggctttatcg ttttcagcag cggtacgaat cataaaggca aatttttcat
     9961 cgccttttac gcctttgccg acattgccgg gattgatgcg gtatttggac aatgctttgc
    10021 cgcattcggg aaattccgcc aacaggcgtt cgccgttgaa gtggaaatcg ccgataagtg
    10081 gtgtggcata gcccatatcg tccaagcggc ggcggatttc ggcaactttg gacgcggctt
    10141 cggggctgtt gacggtaata cgcaccattt cggatccggc atcgctcaat tccttaatct
    10201 gcaatgcggt ggcttttgca tcggcagtgt cggtgttggt catagattgg ataacgacgg
    10261 gtgcttctga accgacggta atatgatcga tgcggacttg atgcgtcttg cggcgttgga
    10321 gtgtgttcat atggtttgaa tctgtttatt gaccgatgag gacggtttgc aattcttccg
    10381 agtaggggaa atttgcctgc aattgtgctt catattcgta tgccgcctgt gcgttgccga
    10441 gggctttggc aattttccag cctagcagca aatcatcggc ctgaaggact tctaccctgc
    10501 tttggtattt tttaaagtag taatcggcat cgcccaactg cccggccagc attttggtgc
    10561 gcgccagttc tttaaatgcg ggtgggaact gcggctgggc ggcgagggaa cgtttcaaat
    10621 aggcttccgc caatccgaat tgcccctgtt ttgcgctgca tatgccttta ttcaggttgg
    10681 caatataagg ggtcgggtag gtggggtcgg ccagggcttt gtcgaaatat gccatagatt
    10741 cggcagggcg gttgagcctg ccgcacagga accagccgta gttgttgttg atttcggcac
    10801 tgtcgggttt gatggagagg gcttgccgga aactttcctg cgccttgtcg ttaactttca
    10861 ggtattggta gatttcggca cggaccagcc aggcaagctc gtttttaggg tccgatttca
    10921 gggcgtcttc aatacttgcc gtcgcctgac ggtagtcctg accgcgcata tattccattg
    10981 ccaactgggt tttgatattg gaaacctgat tggctttttc tgcccgcgag gggcggtagg
    11041 aagtgctgca cgcgcccaag gcaaggacaa gtaataaaga gattcgtttg gatggcttaa
    11101 aaggcataat tacccctgtt gtccgattaa aatctgctgc catttttgtt ggcggcgcgt
    11161 tttatcctga acctgccccg ccaactgtcc gcaggcggca tcgatgtcgt cgccgcgcgt
    11221 ttttcgtacg gtaacgacaa atcctgcctg ctgcaaaata tcgcggaaca cacggatgtt
    11281 ctcattgctg gagcgttcgt atccggagtt tgggaaggga ttgaacggaa tcagattgaa
    11341 cttgcaggga acatctgtga ccagttcgat cagttcgcgc gcatgttgcg ccttatcgtt
    11401 tattccgtcc aacatgacgt attcgaaagt gatgaaatcc ctgggtgctt tgaccagata
    11461 gcgttggcat gcggccatca attctttcaa gggatatttt ttgttcaacg gtacgatttg
    11521 gttgcggact tcgtcattgg aagcgtggag ggaaaccgcc aaagccaccg gcatgacatc
    11581 gcgcaacctg tccatttggg gaaccatacc cgaagtggaa acggttacgc ggcggcggct
    11641 caaaccgtag ccgtggtcgt ccagcatgat gcttaaggcg gtaacgacat tgtcgaagtt
    11701 cgccatcggc tcgcccatgc ccatcatgac gacgttggaa ataacgcgct cgtttttcgg
    11761 tgtaacgccc atggctttgt ttgcccacca caattgcccg atgatttcgg cagaggtcag
    11821 gttgcggttg aagccctgcc ggccggtcga acaaaatgta cattccaaag cgcagccgac
    11881 ttgagaggaa atgcagagcg tgccgcgatc cgattcgggg atgaagacgg tttccacgcc
    11941 gttgcccgta ccgacatcca aaagccattt tcgagtgccg tctgaagatt tttgagacat
    12001 catcagcttg ggaatttcga tgcctgcctg ttcgttcagt ttatggcgca acgattttgc
    12061 caaatcggtc atttcgtcaa aattttgcgc gccggattgg tgcatccaac gcataacctg
    12121 tttggcacgg aaaggttttt cgcccatatc ggcaaaatgt cgggtcagcc cttgaaggtc
    12181 gtagttgagc agattggttt tcatgtgttt gtgtttttct taaatcaagg cttcaaataa
    12241 aaaattgcag ggcaggcaag tttgatttga agccttttgc aacagagttt tcagacggca
    12301 tggatatatt tatgccgtct gaagaggagt tgggcggtgt attgtatcaa cgggggcaga
    12361 tttcggtttg gctgaaaaag taggcaattt ccaaagcggc attttccacg ctgtcggaac
    12421 cgtgtacggc attaatgctg accgaagtgg caaagtccgc gcgtatcgtg ccttcggcgg
    12481 cttcggaagg attagttgca cccatcagtt cgcggttttt caggacggcg ttttcaccct
    12541 ctaatacctg aatcataacc ggaccgccgg tcataaattc aaccaatccg gcgtagaagg
    12601 ggcggtcttt atgaaccgca taaaattctt gcgcctcttt gagagtaagc tgcttcattt
    12661 tggcggcaac gattttcaga ccgttctcct caaagcggct gtatattttg ccgataacat
    12721 ttttgccgac ggcatcgggt ttgatgatgg agatggtacg ttcaatcgcc atgctatatc
    12781 cttattttta cttaagaaga atcaaatcgg tattctatca aaaaaataac ttatccgcct
    12841 gaagccttgg gagatagggt caggtgcggc tgttccaaat aaacttcgga ctgcatttcg
    12901 accatccggc tggcggtgcg ggtaaattct tcggcaaaat cgccttccgt atagatatgg
    12961 ttgacatcta ccgcgccggt ggcacacagt ttgacccgga aatcgtagag tacgtcaatc
    13021 agccaagtca gccgccgcgc ctccgccttt tcttgcggtg agagttgttc caaacctgaa
    13081 ataaaaacca tttcataatg ttcggccaaa tacagatagt cggactgtga gcgggggccg
    13141 aagcacagtg cgcggaaatc aaaccatatg gcacggccgg actcggcttt gtggggaatc
    13201 tcccgaccgt ggatggtgct gatgccgggg ttcaaatcgg taatgcctgt catttctttg
    13261 aacagttttg ccagttttgc ctcattttct tcattggcag gcgtaaagaa aatctcggcg
    13321 gggcggaggg tacgcagtcg gtagtcttca ccgccgtcaa cgtttaagac ggtcaggctg
    13381 gactcgatga gcgcgattgt gggaagaaaa ctgctccggt tttgaccttg cgggtagagt
    13441 tcggaaggcg cgtagtttga agtcgccacc aaaacaacgc cctcgttaag caggttttcc
    13501 agcagacggc ctaaaatcat tgcatccgca atatcgctga catgaaattc gtcaaaacat
    13561 aatacgcggg tttctttggc aatctcggcg gcaacggatt tcaacggatt gctttcgctt
    13621 ttcagggttt tcagcctctg gtggatttct gccataaagg catgaaagtg gacgcggcgt
    13681 ttgcggcggt aagggaggca gccgaaaaaa gcgtccatca gaaagctttt gccgcgtccg
    13741 accccgccat agaaataaag ccctttgggg acttgcgggg aacgcaaact cctgcctaaa
    13801 aaacggtttc ttttgcgttt gaacatcatc aattcggtcc aaagccgatc gaggtgttcg
    13861 atggcagctg cctgcgcgtc gtcgcggatg aagttgggca gttgtgaggc agcctgatac
    13921 caagtcagcg ggctgtgatt ttcaaacggc ggggctttaa aaagttggtc tctattactc
    13981 atatttaacc ttgttatact tcttgcggct aagaaagaaa atgcttaccg tcggtattat
    14041 aaatgatttc cttcaaactt ggcattttcc gtggaaaaga ataatgacgc gcacaagggg
    14101 gtataagcaa aggcggcgtt tcaatatggt gcagatatga gctcaaatgc cttttatagt
//
LOCUS       DAXHPV010000038        13709 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.038, whole genome shotgun sequence.
ACCESSION   DAXHPV010000038 DAXHPV010000000
VERSION     DAXHPV010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13709)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13709)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13709
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.038"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(69..2045)
                     /locus_tag="ACFM6C_000840"
     CDS             complement(69..2045)
                     /locus_tag="ACFM6C_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HFC6158324.1"
                     /translation="MNEFSLAPIVIVLLVSVITVILCRKFNIPSMLGYLLVGFLAGPG
                     MLSLIPKSHATDYLGEIGIVFLMFSIGLEFSLPKLRAMRRLVFGLGGLQVGVTMLSVM
                     GILMLTGVPFNWAFAVSGALAMSSTAIVSRILSEKTELGQPHGQMAMGVLLMQDIAVV
                     PLMILIPALAGGGDGNIWAALGLAFAKMLLTLGLLFFVGSKIMSRWFRMVAKRKSSEL
                     FMINVLLVTLGVAYLTELEGLSMALGAFVAGMLLSETEYRFQVEDDIRPFRDILLGFF
                     FITVGMKLDIQALIGGWRQVLMLLAMLLVLKALVVFAIAFKMKHSVGDSLKTALYLAQ
                     GGEFGFVMLAIAGQLDMVSPEWEQAATAAVLLSMIIAPFLLGGSDALVGRLVKSSWDM
                     KSLDLHSMLVETMSKSDHVLIVGFGRGGQTVGRVLAQEGIPYFALDLDIARVQVARSA
                     GEPVSFGDAKRREVLEAAGLGRAKMVVVTLNNMHETQHVLDNVLSMYPNMPVYVRATN
                     DDYVKTFTDIGAEEAVSDTKETGLVLAGYAMLGNGASYRHVYQTMANIRHSRYAALEG
                     LFVGSDDEAGFGETGETVRHAFPLAAEAYAVGKTVGTLPMAAYGIKLLFVRRRTGRIE
                     NPDASFTLEGGDVLVVAGKKEEIISFENWSLQGI"
     gene            2194..3033
                     /locus_tag="ACFM6C_000841"
     CDS             2194..3033
                     /locus_tag="ACFM6C_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RnfABCDGE type electron transport complex
                     subunit B"
                     /protein_id="HFC6158325.1"
                     /translation="MTATAAAIDRLLPQTQCRECGYDGCLPYAQAVATGEAYNLCAPG
                     GATVIRDISALLGKPFVAPAKTQAKALARIDETACIGCTACIRACPADAIMGAGKLMH
                     TVIADECTGCGLCVAPCPVDCIHMQPVADTVLPRARRFSLSADSRFAAAEHARTRYLK
                     RNERKQREADERKAMLAEREAAVRNARPQTPDTPKKPAFNPADLIAKAMAKAQTQQDR
                     LAAADNRKDYQAKQIAEARERAELRRAQRDMKYGSDSEKAAALEYLKQYKAKQEAAQN
                     TAS"
     gene            3234..4265
                     /gene="gap"
                     /locus_tag="ACFM6C_000842"
     CDS             3234..4265
                     /gene="gap"
                     /locus_tag="ACFM6C_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HFC6158326.1"
                     /translation="MGIKVAINGYGRIGRQVLRAIYDYQIQDQLQIVAVNASGSLETN
                     AHLTKFDTVHGRFEADVSHDGGNLIVNGDKIPFFSTRNPAELPWKELGVDLVMECTGA
                     FTSKEKAKVHLESGAKKVLISAPGGDDVDATVVYGVNDSVLTADMTVVSNASCTTNCL
                     SPVAKVLSESVGIVKGAMTTIHALTNDQTVTDVRHKDLRRARSGVENMIPTKTGAAKA
                     VGLVLPELKGKLDGLAIRVPTVNVSLVDLNFQAARDTTVEEINALMKAASEAGALKGV
                     LGYNTLPLVSMDFNHTTEASHFDATLTKVVDGNMVKVFAWYDNEWGFSCQMLNTARRM
                     FGLEVRPLK"
     gene            complement(4415..5140)
                     /gene="aat"
                     /locus_tag="ACFM6C_000843"
     CDS             complement(4415..5140)
                     /gene="aat"
                     /locus_tag="ACFM6C_000843"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008914 - leucyl-tRNA--protein transferase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HFC6158327.1"
                     /translation="MRIPLLAPDNYAFPDPAYALARCDGLVGVSRDLDAGRLLEAYQN
                     GVFPWFLRDGWFFWYAVGPRAVIVPERLHVPCSLAKTLRNGSYRVAVNGCFAEVVAHC
                     AAAARPNQDGTWIAPEFQTAYLKLHEMGHAHSFECHYPDESGETRLAGGFYGVQIGRV
                     FYGESMFALQPDASKIAFACAVPFLADLGVELIDCQQDTEHMRRFGSELLPFADFAER
                     LRMLNAMPLKEEIGRREVACRGL"
     gene            complement(5210..5644)
                     /gene="fur"
                     /locus_tag="ACFM6C_000844"
     CDS             complement(5210..5644)
                     /gene="fur"
                     /locus_tag="ACFM6C_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HFC6158328.1"
                     /translation="MEKFNNIAQLKDSGLKVTGPRLKILDLFETHAEEHLSAEDVYRI
                     LLEEGVEIGVATIYRVLTQFEQAGILQRHHFETGKAVYELDKGDHHDHIVCVKCGEVT
                     EFHNPEIEALQDKIAEENGYRIVDHALYMYGVCSDCQAKGKR"
     gene            5863..6240
                     /locus_tag="ACFM6C_000845"
     CDS             5863..6240
                     /locus_tag="ACFM6C_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HFC6158329.1"
                     /translation="MNKTLILALSALLGLAACSAERVSLFPSYKLKIIQGNELEPRAV
                     AALRPGMTKDQVLLLLGSPILRDAFHTDRWDYTFNTSRNGIIKERSNLTVYFENGVLV
                     RTEGDVLQNAAEALKDRQNTDKP"
     gene            6250..7059
                     /gene="dapB"
                     /locus_tag="ACFM6C_000846"
     CDS             6250..7059
                     /gene="dapB"
                     /locus_tag="ACFM6C_000846"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HFC6158330.1"
                     /translation="MTPLKIAIAGANGRMGRVLVEAVNNHPDTVLSGALEHSGSEALG
                     LDAGYAVGLKTGIAISDDVDTVLAQSDVLIDFTRPEPTLKHLQKCVEKQVNIIIGTTG
                     FDDAGKAAIQAAGEKTGVVFAANFSVGVNLTFHLLDTVARVLNEGYDIEIIEGHHRHK
                     VDAPSGTALRMGEVIAGALGRDLKQCAVYGREGHTGPRDPSTIGFATVRAGDIVGDHT
                     ALFATDGERVEITHKASSRMTFAAGAVRAAVWVNGKTGLYDMQDVLGLNNR"
     gene            complement(7308..7703)
                     /locus_tag="ACFM6C_000847"
     CDS             complement(7308..7703)
                     /locus_tag="ACFM6C_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003742724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158331.1"
                     /translation="MPKKDYQFLYIYEGTLLNYTLKNDEFHIIVQNVDYPDFPQEIPT
                     PNYTDWVKIKFKQFSYLKFIYGYATKSQDKDIDNILELGELKQDDEILDYGGTLELIG
                     GRCDLLTGFSIDIVCREIELEFLDQESFN"
     gene            complement(7721..7966)
                     /locus_tag="ACFM6C_000848"
     CDS             complement(7721..7966)
                     /locus_tag="ACFM6C_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158332.1"
                     /translation="MDYLLEAARITKEGGEIVINGTSNNKYLRGIPNEAELARMGLRL
                     KYNGLLKEEFKQLKFHLSNGGDLRSSNYKTIVFEKVK"
     gene            complement(7974..9146)
                     /gene="lpxB"
                     /locus_tag="ACFM6C_000849"
     CDS             complement(7974..9146)
                     /gene="lpxB"
                     /locus_tag="ACFM6C_000849"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008915 - lipid-A-disaccharide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HFC6158333.1"
                     /translation="MWGQTNMVDKKSPLIAVSVGEASGDLLGAHLIRAIRKRCPQARF
                     VGIGGELMKAEGFESLYDQERLAVRGFAEVVKRLPEILRIRRGLVRDLLSLKPDVFVG
                     IDAPDFNLGVAERLKRAGIPTLHYVSPSVWAWRRERVGKIVHQVNRVLCLFPMESQLY
                     LDAGGRAEFVGHPMAQLMPLEDDRKTARKTLGVDAGIPVFALLPGSRVSEIDYMAPVF
                     FQTALLLLKRYPAARFLLPAATEATKRRLAEVLQRPEFAGLPLTVIDRQSETVCRAAD
                     AVLVTSGTATLEVALCKRPMVISYKISPLTYAYVKRKIKVPHVGLPNILLGKEAVPEL
                     LQHDAVPEKLAAALADWYEHPDKVAALQQDFRALHLLLKKDTADLAARAVLEEAGC"
     gene            complement(9194..10186)
                     /locus_tag="ACFM6C_000850"
     CDS             complement(9194..10186)
                     /locus_tag="ACFM6C_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HFC6158334.1"
                     /translation="MKTHEISKDSVSLIGVAEHEAGQRLDNYLIKILKGVPKSHIHRI
                     IRAGEVRLNKKRCKPDSRIAEGDTVRIPPVRVAEKEMPSERRAAVPARAFEAVYEDDA
                     LLVIDKPSGVAVHGGSGVSFGVIEQLRRARPEARYLELVHRLDKDTSGLLMVAKKRSA
                     LVKLHEAIRNDHPKKIYLALGVGKLPDDNFHVRLPLFKYTGAQGEKMVRVSEDGQAAH
                     TVFRVLNRFSDGILHGVGLSHLTLVRATLKTGRTHQIRVHLQSQGCPIAGDERYGDYQ
                     ANRRLQKLGLKRMFLHASELHLNHPLTGEPLVLKAELPLDLAQFAVMLENGTKM"
     gene            10680..13439
                     /locus_tag="ACFM6C_000851"
     CDS             10680..13439
                     /locus_tag="ACFM6C_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HFC6158335.1"
                     /translation="MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKG
                     IITRIEPSLEACFVDYGTDRHGFLPFKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQV
                     EKDERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAQLDIPN
                     GMSIIARTAGIGRSAEELEWDLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRD
                     YFRPDIGEILVDNQEVYDQVAEFMSYVMPGNIGRLKLYEDHTPLFSRFQIEHQIESAF
                     SRSVSLPSGGAIVIDHTEALVSIDVNSARATRGADIEDTAFKTNMEAAEEVARQMRLR
                     DLGGLVVIDFIDMENPKHQRDVENVLRDALKKDRARVQMGKLSRFGLLELSRQRLKPA
                     LGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEAMKDNTGEVHAQVPVDVATFLLN
                     EKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRIDDVEEDGEPSYKRVAEPEEDE
                     SAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWWDSFKAWLKRIFGGSETQA
                     APAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREVAGKTAGQEARADKAET
                     RNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETEVQTGKRRRNGSRSE
                     RGQTAPETATVAETTVQTAENTPSEPHTAEDKGSKPKSERNRRERDSRDAKERRERNN
                     QRDRRQNGKKRNIPSAAKIEQYLNIHDTADKVRSAAAHVFGETDANAPITVSIADPVA
                     ERDLPTASPAVSNGDAPVYDAAEKIRRATAAILPEGATPKAEAQEMPSENATFTAAAE
                     QARETAQTGGLVLIETDPAALKAWAAQPEVLAGRGLRRSEQPKPSEAATVPAEEMIQV
                     ETRQG"
BASE COUNT         3452 a         4466 c         3203 g         2588 t
ORIGIN      
        1 tgcgatttgc gaaagcgtta ttaaaccaaa taaccggaaa tggcgcaagc cttatttcgg
       61 catttcattt atattccctg caaactccag ttttcaaaag agataatttc ttcttttttg
      121 cctgcgacca ccaacacgtc accgccttcc aatgtaaacg aggcatccgg gttttcaatc
      181 cggccggtgc ggcggcggac gaacaagagt ttgatgccgt aagccgccat cggaagcgtg
      241 ccgactgttt tgccgacggc gtatgcttct gcagccaaag gaaaggcgtg gcggacggtt
      301 tcgccggttt cgccgaatcc tgcctcatca tcactaccga caaacagtcc ctccaacgcg
      361 gcataacggc tgtggcggat atttgccatc gtctgataga cgtgccgata cgacgcgccg
      421 ttgcctaaca tcgcatagcc tgccagcacg agtccggttt ctttggtgtc cgacacggct
      481 tcttccgcac ctatatcggt aaacgttttc acataatcgt cattggtggc gcgcacatat
      541 acgggcatat tgggatacat ggacagcaca ttgtctaaaa cgtgttgcgt ttcgtgcata
      601 ttgttgagcg taaccaccac cattttcgcc cgtcccaaac cggcggcttc caatacttcc
      661 cggcgtttcg catcgccgaa cgacaccggt tcgcccgcac ttctggcaac ctgcacgcgc
      721 gcgatgtcca aatcgagtgc gaaatacggg ataccctctt gggcaaggac gcgtccgacc
      781 gtctgcccgc ccctgccgaa gccgacaatc agcacatgat cggacttgct catggtttct
      841 accagcatac tgtgcagatc gagcgacttc atgtcccagc ttgacttgac caaacgcccg
      901 accagcgcat cgctgccgcc caagaggaag ggcgcgataa tcatcgacag cagaaccgcc
      961 gccgtcgccg cctgttccca ttctggcgaa accatatcaa gctgcccggc aatggccagc
     1021 atcacgaagc cgaactcgcc gccctgcgcg agatacaaag ccgttttgag gctgtcgccg
     1081 accgaatgtt tcattttgaa ggcaatggca aacacaacca gtgccttcaa caccagcagc
     1141 attgccaaca gcatcaatac ctgccgccag ccgccgatta atgcctgaat gtccagcttc
     1201 atgccgaccg tgataaagaa aaagccgagc aagatatcgc ggaacgggcg gatgtcgtct
     1261 tcgacttgga aacggtattc cgtttccgaa agcagcatgc cggcaacgaa tgcgcccaac
     1321 gccatagaca aaccttccag ctcagtcaga taagccacac ccaaggttac cagcagcaca
     1381 ttgatcataa agagttcgga cgatttgcgt tttgccacca tcctgaacca tcgcgacata
     1441 attttgctgc cgacgaaaaa cagcagcccc agcgtcagca gcatttttgc aaacgccaaa
     1501 cccaaggccg cccaaatatt tccgtcccct ccgccagcca gcgcgggaat cagaatcatc
     1561 agcggcacga cggcgatgtc ctgcatcagc agcacgccca tcgccatctg accgtgcggc
     1621 tgccccaatt ccgtcttttc cgacaaaatc cggctcacaa tcgccgtgga cgacatcgcc
     1681 aacgcgcccg acacggcaaa cgcccaattg aacgggacgc ccgtcagcat cagtatgccc
     1741 attaccgaca gcatcgtaac gccgacctgc aaaccgccca gcccaaacac cagccgcctc
     1801 atcgccctca acttgggcag cgagaactcc aaaccgatgc tgaacatcag gaacacaatc
     1861 ccgatttcgc ccaaataatc cgtcgcatgg cttttcggaa tcaggctgag cataccgggc
     1921 cccgccaaaa agcccaccag caggtagccc agcatggagg gaatgttgaa cttgcggcac
     1981 aggatcaccg taatgaccga caccagcaaa acaatcacaa taggggcaag cgaaaattcg
     2041 ttcatagacc gtccgaacag gaaaatacag aaaaatgccg tctgaaacgg catacgccgc
     2101 cgcattataa caaaacaccg cgcaccatcc gaaacgggcg cggcatacaa ttctgctaaa
     2161 atacgccctt tcgattttga gccgcacacc gacatgaccg ccacagccgc cgccatagac
     2221 cgcctgcttc cccaaaccca atgccgcgaa tgcggctacg acggctgcct gccctacgca
     2281 caggcagtcg caacaggcga agcgtacaac ctctgcgccc cgggcggcgc aaccgtcatt
     2341 cgggacattt ccgccctgct cggcaaaccc tttgtcgcac ctgccaaaac ccaagccaaa
     2401 gcactcgccc ggatagacga aaccgcctgt atcggctgca ccgcctgcat ccgcgcctgc
     2461 cctgccgatg ccattatggg cgcgggcaaa cttatgcaca ccgtcatcgc cgacgaatgc
     2521 accggctgcg gactctgcgt cgccccctgc cccgtcgact gcatccatat gcagcccgtt
     2581 gccgacaccg tcctgccccg cgcgcgccgc ttcagcctgt ccgccgacag ccgttttgcc
     2641 gccgccgaac acgcgcgcac gcgctacctc aaacgcaacg aacgcaaaca gcgcgaagcc
     2701 gacgaacgca aggccatgct tgccgaacgc gaagccgccg tccgcaacgc gcgtccgcaa
     2761 acgcccgaca caccgaaaaa accggcgttt aaccctgccg acctcatcgc caaagccatg
     2821 gcaaaagcgc aaacccaaca agaccgcctc gccgccgccg acaaccgcaa agactatcag
     2881 gcgaaacaga tagccgaagc ccgcgaacgc gccgagttgc gccgcgccca acgcgatatg
     2941 aaatacggca gcgacagcga aaaagccgcc gccctcgaat acctcaaaca atacaaagcc
     3001 aaacaggaag ccgcacagaa taccgcctcc tgagccctcc cctgatatgc cgtctgaagc
     3061 cgcttcagac ggcattttat caagctctcc gtccgccgca cccgtgccgt ccgcatctta
     3121 ccgcccaccc ttccggccgc gccgttttca ataaaatatt aattacacgc cactacaaat
     3181 ttgctataat tcgccccgaa aatctaccca acccctcaac aaaggaacga accatgggca
     3241 tcaaagtcgc catcaacggc tacggacgca tcggccgcca ggttttgcgc gccatctacg
     3301 actatcagat tcaagaccaa ctccaaatcg tcgccgtcaa cgccagcggc agccttgaaa
     3361 ccaacgccca cctcaccaaa ttcgacaccg tgcacggacg ctttgaagcc gacgtatccc
     3421 acgacggcgg caacctcatc gtcaacggcg acaaaatccc cttcttctcg acccgcaacc
     3481 ctgccgaact gccgtggaaa gaactcggtg tcgatttggt catggaatgc accggcgcgt
     3541 tcaccagcaa agaaaaagcc aaagttcatc tggaaagcgg cgcgaaaaaa gtcctcattt
     3601 ccgcaccggg cggcgacgat gtcgatgcaa ccgtcgtgta cggcgtgaac gacagcgtcc
     3661 tgaccgccga catgaccgtc gtttccaacg cttcctgcac caccaactgc ctctcgccgg
     3721 ttgccaaagt gttgagcgaa agcgtcggca tcgtcaaagg cgcgatgacc accatccacg
     3781 cgctgaccaa cgaccaaacc gttaccgacg tgcgccacaa agacctgcgc cgcgcccgca
     3841 gcggcgtgga aaacatgatt ccgaccaaaa ccggcgcggc aaaagccgtc ggactggtac
     3901 tgcccgaatt gaaaggcaaa ctcgacggac tcgccatccg cgtgccgacc gtcaacgtat
     3961 cattggtaga tttgaacttc caagccgcgc gcgacaccac agtcgaagaa atcaacgcac
     4021 tgatgaaagc cgcctcggaa gcgggtgcgc tcaaaggcgt tttgggctac aacaccctgc
     4081 ccttggtttc catggacttc aaccacacca ccgaagccag ccacttcgac gcaacgctga
     4141 ccaaagtcgt cgacggcaac atggtcaaag tcttcgcatg gtatgacaac gaatggggct
     4201 tcagctgcca aatgctgaac accgcacgcc gtatgttcgg acttgaagtg cgcccgctca
     4261 aataagcaat aaaccgtcaa acaaaatgcc gtctgaaacc cgatatcgat gttttcaagt
     4321 ttcagacggc atttttcacc gtgattttac ccggctgtcg tcatttccaa ttttaatccg
     4381 ccatatttga acctgaccga agcataagcc gccatcaaag ccccctgcac gccacttcgc
     4441 gccgcccgat ttcctctttc aacggcatgg cgttcaacat ccgcagacgt tcggcaaaat
     4501 ccgcaaacgg cagcagctcc gaaccgaaac ggcgcatatg ttccgtgtcc tgctggcagt
     4561 ctatcagttc cacgcccaaa tccgccaaaa acggcacggc gcaggcaaac gcgattttcg
     4621 acgcatccgg ttgcaacgca aacattgatt cgccataaaa caccctgccg atttgcacgc
     4681 cgtaaaagcc gcccgccaac ctcgtttcac cgctttcatc gggataatgg cactcgaaag
     4741 aatgcgcgtg tcccatttcg tgcagcttca aatatgccgt ctgaaactcg ggcgcaatcc
     4801 aagttccgtc ctgattcggg cgcgccgctg ccgcacaatg cgcgaccact tccgcaaaac
     4861 agccgttgac tgcaacccga tagctgccgt tgcgtagcgt tttcgccagc gagcacggaa
     4921 cgtgcagacg ttcgggaaca atcaccgcac gcggcccgac cgcataccaa aaaaaccaac
     4981 cgtcccgcaa aaaccaagga aacacgccgt tctgatacgc ctcgagcagc cgccccgcgt
     5041 ccaaatccct gctcacgccg accagcccgt cgcaccgtgc caaagcatag gcaggatcgg
     5101 gaaaggcata attgtcaggg gcaagcagcg gaatacgcat ggcagttctc caaaaacaca
     5161 gacggcatcc aaaatcatga atgccgtctg aacaacaaac cgtccggatt taacgtttgc
     5221 ccttggcctg acagtcgctg cacacgccgt acatatacag cgcgtgatcg acgatgcggt
     5281 agccgttttc ctcggcgatt ttgtcttgca gggcttcgat ttcgggattg tggaactccg
     5341 ttacctcgcc gcacttcacg cagacgatat ggtcgtggtg gtcgcccttg tccaactcat
     5401 aaaccgcctt gcccgtttca aaatggtggc gttgcaaaat gcccgcctgc tcaaattgcg
     5461 tcagcacgcg gtaaatcgtc gccacaccga tttccacacc ctcttccaac aaaatgcggt
     5521 acacatcttc cgcactcaaa tgctcttccg catgcgtctc gaacaaatcc aaaatcttca
     5581 aacgcgggcc ggtaaccttc agaccgctgt ctttcagttg tgcaatattg ttgaattttt
     5641 ccataatatt caatacccct gtaaaacaat agacgttata atacgcaatt tcggcctgtt
     5701 tgcccactat cgcaccatag cagtttgcaa tagtaaaacc gcaccggcgg ccgatgcgcg
     5761 gacagggcgg ataccgctta atcgtatgat tatcgttcgc ttttataaaa tattcaagca
     5821 gtgttacact acccatcccg atttgcacag aaaggcattt ccgtgaacaa aaccctcatc
     5881 ctcgcccttt ccgccctcct cggccttgcc gcgtgcagtg ccgaacgcgt ttcactgttc
     5941 ccctcgtaca aactcaaaat catacagggc aacgaactcg aaccgcgcgc cgttgccgcc
     6001 ctccgccccg gcatgaccaa agaccaagtc ctgctcctgc tcggcagccc catactgcgc
     6061 gacgcattcc ataccgaccg ctgggactat accttcaaca cctcccgcaa cggcatcatc
     6121 aaagaacgca gcaatctgac cgtctatttt gaaaacggcg tactcgtccg caccgaaggc
     6181 gacgtcctgc aaaacgctgc cgaagccctc aaagaccgcc aaaacacaga caaaccataa
     6241 ggaacacaca tgacaccgct caaaatcgcc atcgccggcg caaacggccg tatgggacgc
     6301 gtattggttg aagccgtcaa caaccatccc gacaccgtcc tctccggcgc gctcgaacac
     6361 tcgggctcag aagccctcgg gctggacgca ggctacgccg tcggactcaa aaccggcatc
     6421 gccatttcag acgacgttga caccgttctc gcacaaagcg acgtactcat cgactttacc
     6481 cgccccgagc cgaccctcaa acacctgcaa aaatgcgttg aaaaacaagt caacatcatc
     6541 atcggcacaa caggcttcga cgatgcgggc aaagccgcca tccaagccgc aggcgaaaaa
     6601 acaggcgttg tcttcgccgc caacttcagc gtcggcgtca acctcacctt ccacctcctc
     6661 gacaccgtcg cccgcgtatt aaacgaaggc tacgacatcg aaatcattga aggccaccac
     6721 cgccacaaag tcgatgcccc cagcggcacc gcgttacgca tgggtgaagt catcgccggc
     6781 gcgctcggcc gcgacctcaa acaatgcgcc gtttacggcc gtgaaggcca caccggtccg
     6841 cgcgatccgt ccaccatcgg ctttgccacc gtccgcgcag gcgacatcgt cggcgaccac
     6901 accgccctct tcgccaccga cggcgaacgc gtggaaatca cccacaaagc cagcagccgc
     6961 atgacctttg ccgccggtgc cgtccgcgcc gcagtttggg taaacggcaa aacgggtttg
     7021 tacgatatgc aggatgtact cgggctgaac aaccgttaac ccccatacaa aataccgtct
     7081 gaaaagatat tgttcagacg gcattttgcc gacaggctcc gtatcggcat atcaatgttt
     7141 caacacacag gacgacacat aaagcgtcgc cctatgtgtt gccctgattc ggaaggggtt
     7201 acgcccctcc caaataaagt ctgattctac cgccctaaag ggcggggttt caaccgaaaa
     7261 ggaaatacga taaagttgcc tgcgcagcat aacaagttac ggctcgttta attgaaactc
     7321 tcctgatcta aaaattctaa ctctatttcc cggcaaacta tatctatact aaaaccagtt
     7381 agaagatcac atctaccgcc tatcaattcc agcgtacctc cataatccaa gatttcatca
     7441 tcctgcttta attcgccaag ctccaatata ttatcgatat ctttatcttg gctctttgta
     7501 gcgtatccat agataaattt cagatagctg aactgcttga atttaatttt tacccagtct
     7561 gtataatttg gtgtaggaat ctcttgagga aagtccggat aatccacatt ctggacgatg
     7621 atatggaatt catcgttttt caaagtatag tttaatagag tgccctcata tatatacaga
     7681 aattgataat ctttttttgg aatagtatta agttgtcata ttattttacc ttttcaaaaa
     7741 caatggtttt ataattactt gatctcaagt cgcctccatt gctcagatga aatttcagtt
     7801 gtttaaactc ttcctttaac agaccattat attttaacct taatcccatt cgggccagtt
     7861 ctgcttcatt tggaattcct cttaaatact tattgtttga tgtgccatta atcacaattt
     7921 ctcccccttc ttttgtaata cgtgctgctt caagaagata atccattaac cgctcaacat
     7981 cccgcctctt ccaaaaccgc gcgcgcggcc aaatccgccg tatctttttt caacagcagg
     8041 tgcaacgccc tgaaatcctg ttgcagcgcg gcaaccttat cggggtgttc gtaccagtcc
     8101 gccaacgccg ccgccagttt ttccggtacg gcatcatgtt gaagcagctc cggcacagcc
     8161 tccttaccca acaggatatt cggcaggccg acatgcggca ctttgatttt gcgtttcaca
     8221 taagcatagg tcagcggcga aatcttgtag ctgatgacca tcggacgctt gcacaacgcc
     8281 acctccaaag tcgccgtacc gctcgttacc agcaccgcat ccgccgccct gcacaccgtt
     8341 tcagactgtc tgtcgattac cgtcagcggc aatccggcaa actccggacg ctgcaaaact
     8401 tccgccaaac gccgcttcgt cgcctcagtt gcggcaggca gcaggaagcg tgcggcagga
     8461 tagcgtttca acaacaataa tgccgtctga aaaaacaccg gcgccatata atcgatttcg
     8521 ctgacgcggc tgccgggcag cagggcgaat acggggatgc cggcatccac gcccaaagtt
     8581 ttccgcgccg ttttacggtc gtcttccaag ggcataagct gcgccatcgg atgaccgaca
     8641 aactccgcac gtccgcccgc atcgagataa agctgcgact ccatcgggaa caggcacagc
     8701 acgcggttga cctgatgcac gattttgccc acgcgttccc gccgccacgc ccacaccgac
     8761 ggactgacat aatgcagggt cggaatgccc gcccgtttga gccgctccgc cacacccaga
     8821 ttaaaatcgg gcgcatcgat gccgacaaac acatcaggtt tcaacgacag caaatcccgt
     8881 accagccccc tgcgtatccg taaaatttcc ggcaggcgtt ttaccacctc ggcaaagccg
     8941 cgcaccgcca gtcgctcctg atcataaagg ctctcgaaac cttccgcctt catcagttcg
     9001 ccgccgatac cgacaaaacg cgcctgcggg caacgctttc ggatggcgcg tatcaggtgc
     9061 gcccccaaca ggtcgcccga cgcttcgccg acactgacag caatcaaagg gcttttttta
     9121 tcaaccatat tcgtctgtcc ccacatactt tcacgtcccg atgccgtctg aaggcttcag
     9181 acggcatcgg ggttcacatt ttcgtcccgt tttccaacat caccgcaaac tgtgccaagt
     9241 ccagcggcag ctccgccttc aacaccagcg gctcgcccgt gagcggatgg ttcaggtgca
     9301 gctcggacgc gtgcaaaaac atccgcttca aacccaactt ctgcaaacga cggttagcct
     9361 gataatcgcc gtagcgttcg tcgcccgcaa tcggacagcc ttgagattgc agatggacgc
     9421 ggatttggtg cgtacgaccc gttttcagcg ttgcccgcac caaagtcagg tgcgacagcc
     9481 cgacaccgtg caaaatgccg tctgaaaacc gatttaacac acggaacacc gtatgcgcag
     9541 cctgcccgtc ctcgctaacg cgtaccatct tttcgccttg tgcgcccgtg tatttgaaca
     9601 gcggcagcct gacgtggaaa ttatcatccg gcagcttgcc cacgcccaat gcgagataga
     9661 tttttttggg gtggtcgttg cggatggctt cgtgcagttt gacgagcgcg ctgcgtttct
     9721 tcgccaccat cagcaagccg ctcgtatcct tgtccaaacg gtggacgagt tcaagataac
     9781 gcgcctccgg acgggcgcgg cgcaactgtt cgataacgcc aaaactcacg ccgctgccgc
     9841 catgcaccgc cacgccggaa ggcttatcga tcaccaaaag cgcgtcgtcc tcatacaccg
     9901 cctcaaacgc acgcgccggt acggcggcac gcctttcaga cggcatttcc ttctccgcca
     9961 cgcgcacagg cggaatccgc accgtatccc cctccgcaat acggctgtcg ggtttgcagc
    10021 gtttcttgtt caaccgcacc tcgccggcgc ggataatgcg gtggatatgg ctcttgggta
    10081 cgcccttgag gatttttatc agatagttat caaggcgttg ccccgcctca tgttcggcaa
    10141 cccctatcaa gctgaccgaa tctttgctta tttcgtgcgt tttcatctat aatccgaaca
    10201 tccgtttcag caaaaagcgc gcccgccgcg cccccctgaa acggtttact ttaaaacgga
    10261 attttatatt aaaaacgcac tccgcaaagc attttccctg cgcctgttcc cagccggcag
    10321 gcgcagaacg taatcaagtt tgaattgatt ttgccgtttc ggcgcggaag taagacggca
    10381 gccgggcccc aagtcccaaa cgcaaaccgc ccaaaacaca ggcatcacga taacaagaag
    10441 aagccggccc ccatttttcc gaccgcagcg ttcggaacgc ggcagacaaa ccgccgcatc
    10501 gatctttata gccttctgta tccgaccctt ccgcacacgg ttctccggaa cgtgcatccc
    10561 tgcggatttt caactcaaaa actgattacc ggttttatcc gaaaacatcg gaaaacccag
    10621 ccttacggaa tgccgaaccg gaccggcgcg cccgaatgcc gcccgtccac gaggtgatca
    10681 tgaaaagaat gttattcaac gcaacgcagg ccgaagagct gcgcgttgcc atcgtcgacg
    10741 gacaaaacct gctggatttg gacatcgaaa cgctgggcaa agaacagcgc aaaggcaata
    10801 tctacaaagg catcattacc cgcatcgagc cgtcgctgga agcgtgtttc gtggattacg
    10861 gaaccgaccg ccacggcttc ttgccgttta aagaagtctc ccgctcatac ttccaagact
    10921 acgaaggcgg acgcgcgcgc atccaagacg tgctcaaaga aggcatggaa gtcatcgtcc
    10981 aagtcgaaaa agacgagcgc ggcaacaaag gcgccgcgct gaccaccttc atcagcctcg
    11041 ccggacgcta tctggtattg atgccgaaca acccgcgcgg cggcggcgta tcccgccgta
    11101 tcgaaggcga agaacgtcaa gaactcaaag ccgctatggc gcaactcgac attccgaacg
    11161 gcatgagcat catcgcccgt accgccggca tcggccgcag cgcggaagag ttggaatggg
    11221 atttgaacta cctcaaacaa ctctggcagg cgattgaaga agcaggaaaa gcgcatcacg
    11281 acccttacct gctctttatg gaaagctcgc tgctcatccg cgccatccgc gactatttcc
    11341 gccccgacat cggcgagatt ttggtggaca atcaagaagt ttacgaccaa gttgccgagt
    11401 tcatgagcta cgtcatgccg ggcaatatag gccgtctgaa actctacgaa gaccacacgc
    11461 cgctgttttc ccgcttccaa atcgaacatc aaatcgaaag cgcgttttcg cgcagcgtca
    11521 gcctgccttc cggcggcgcg attgtgatcg accacaccga agccctcgtc tccatcgacg
    11581 tgaactccgc acgcgccaca cgcggcgcgg acatcgaaga caccgcgttc aaaaccaata
    11641 tggaagccgc cgaagaagtc gcccgacaaa tgcgcctgcg cgacttgggc ggtttggtcg
    11701 tcatcgactt catcgacatg gaaaacccca aacaccagcg cgatgtggaa aacgtcctgc
    11761 gcgacgcgct caaaaaagac cgcgcccgcg tacagatggg caaactctcc cgtttcggac
    11821 ttttagaatt gagccgccaa cgtttgaaac cggctttggg cgaaagcagc catgttgcgt
    11881 gtccgcgctg tgccggcacc ggcgtgattc ggggcatcga atccaccgcc ctgcacgttt
    11941 tgcgcatcat tcaagaagaa gcaatgaaag acaacaccgg cgaagtacac gcacaagtgc
    12001 ccgtcgatgt cgccaccttc ctgctgaacg aaaaacgcgc cgagctgttt gcgatggaag
    12061 agcgtttgga tgtcaacgtc gtcctgattc cgaacatcca cctcgaaaat ccgcactacg
    12121 aaatcaaccg catccgcatc gacgacgtag aagaagacgg cgaaccgagc tacaaacgcg
    12181 tcgccgagcc ggaagaagac gaatccgcca aacctttcgg cggcgaaaaa gccaaagccg
    12241 cccgtcccga acccgccgtc aaaggcgtgc gccacaccag ccccgccccg actgccgccc
    12301 ccgagaaaaa aacctcctgg tgggacagct tcaaagcatg gctcaaacgc attttcggcg
    12361 gcagcgaaac ccaagccgcg cccgctgccg aaacctccga aaaacgcagc acggcaaacc
    12421 gcagcggcag ccgcgccaac aaccgccgcc aaaacccgcg ccgcagcaaa cgcgaaggca
    12481 gcaaagtaga agtccgcgaa gtggcaggca aaactgccgg acaggaagcg cgcgccgaca
    12541 aagccgaaac gcgcaacaac ggcaaccgcc gccgcaacga acgcggcgac cgtgccgccg
    12601 gacgcgccga cgaagcggaa atccaagacc gcaacataca gcctgccgca accgttgcag
    12661 atgccgcacc gtccgaaacc gaagtgcaaa ccggaaaacg ccgccgcaac ggcagccgca
    12721 gcgaacgcgg ccaaaccgcg ccggaaaccg ccaccgttgc cgaaacaacc gttcagacag
    12781 cggaaaacac gccgtccgaa ccgcataccg cagaagacaa aggcagcaag cccaaatccg
    12841 aacgcaaccg ccgcgaacgc gacagccgag atgccaaaga acgccgcgag cgcaacaatc
    12901 agcgcgaccg ccgtcaaaac ggcaaaaaac gcaatattcc gtctgccgcc aaaatcgagc
    12961 agtacctgaa tattcacgac accgccgaca aagtccgttc cgccgccgcg cacgttttcg
    13021 gcgaaaccga cgcaaacgcg ccgattaccg tcagcattgc cgatccggtt gcagaaaggg
    13081 atcttccgac agcatctccc gccgtttcaa acggcgacgc accggtttat gatgcggcgg
    13141 aaaaaatccg ccgtgccacc gccgccatcc tgcccgaagg cgcgacaccg aaagccgaag
    13201 cacaggaaat gccgtctgaa aacgcaacct ttacggctgc ggcggaacag gcacgggaaa
    13261 ccgcacaaac cggcggactc gtcctgatcg aaaccgaccc tgccgcattg aaggcatggg
    13321 cggcacaacc cgaagtccta gccggacgcg gtttgcgccg ttccgaacag cccaagccgt
    13381 ctgaagccgc aaccgtccct gccgaagaaa tgatccaagt cgaaacccgg caaggctgaa
    13441 ccgacggcgg caaaaagagg ttctgttccg cagaacctct tttttacatg ggttcggata
    13501 cctgcaatgc cgtctgaaac ttcgccattc ccgtgattac cgaaacattc cgccattccc
    13561 atgattcccg caacattccg tcattcccat gattcccgca acattccgtc attcccatga
    13621 ttcccgcaac attccgtcat tcccatgaaa acgggaatct agaacctcaa actttcggat
    13681 aatctttgaa tattgccgtc gcccaaagg
//
LOCUS       DAXHPV010000039        13669 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.039, whole genome shotgun sequence.
ACCESSION   DAXHPV010000039 DAXHPV010000000
VERSION     DAXHPV010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13669)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13669)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13669
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.039"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..215
                     /locus_tag="ACFM6C_000852"
     CDS             <1..215
                     /locus_tag="ACFM6C_000852"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158336.1"
                     /translation="LHIENAAQANFQFASLVLALSHGERGLGCRLPLRFRQILTSLIP
                     RFSFAEAALSDDLLEHHRYTHLRNAV"
     gene            complement(226..549)
                     /locus_tag="ACFM6C_000853"
     CDS             complement(226..549)
                     /locus_tag="ACFM6C_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HFC6158337.1"
                     /translation="MDIVQLGSAELKAWMDEGRMFCLLDVRTDEETAVCSLPNALHIP
                     MNLIPLRQNELPDDVPLVVYCHHGIRSLHTAMYLADAGFENLYNLQGGIDAWAAEIDG
                     NMMRY"
     gene            complement(628..1284)
                     /locus_tag="ACFM6C_000854"
     CDS             complement(628..1284)
                     /locus_tag="ACFM6C_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HFC6158338.1"
                     /translation="MDFEKARFNMVEQQIRPWDVLDFDVLDALAEIPRELFVDEDLQG
                     LAYADMALPLANGHKMLEPKVVARLAQGLKLTKNDTVLEIGTGSGYATALLAKLAGRV
                     VSDDIDAEQQNRAKAVLDGLGLDNIDYVQNNGLTELSAGAPFDAVYVGGAVNLVPDVL
                     KQQLKDGGRMAVIVGRKPVQRALLITRKGDVFEEKVLFDTLVAHLDDKDADPFGGFDF
                     "
     gene            complement(1386..1889)
                     /locus_tag="ACFM6C_000855"
     CDS             complement(1386..1889)
                     /locus_tag="ACFM6C_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0033745 - L-methionine-(R)-S-oxide
                     reductase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HFC6158339.1"
                     /translation="MHALHFSASDKAALYREVLPQIESVVADETDWVANLANTAAVLK
                     EAFGWFWVGFYLVDTRSDELVLAPFQGPLACTRIPFGRGVCGQAWAKGGTVVVGDVDA
                     HPDHIACSSLSRSEIVVPLFSDGRCIGVLDADSEHLAQFDETDALYLGELAKILEKRF
                     EASRQAA"
     gene            2073..2846
                     /gene="tpiA"
                     /locus_tag="ACFM6C_000856"
     CDS             2073..2846
                     /gene="tpiA"
                     /locus_tag="ACFM6C_000856"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HFC6158340.1"
                     /translation="MYHQIGMWDQKWVIGNWKMNGRLQNNNSLMHRFRILPTAERVLI
                     GLAAPTVYLLQLHNAMQIVLNNRILTCAQDVSRFPDNGAYTGEVSAEMLADTGTDIVL
                     IGHSERSLYFGEKNEIQRRKMENVLNVGLIPLLCVGESLEEREAGKEHEVIAHQLSIL
                     QGLDTKNIAVAYEPVWAIGTGKVATVEQIADMHAFIYKEILSLCGSDVKIRVLYGGSV
                     KADNAADIFAVPYVDGALVGGASLSYDSFTAIISAAQNA"
     gene            2853..3203
                     /gene="secG"
                     /locus_tag="ACFM6C_000857"
     CDS             2853..3203
                     /gene="secG"
                     /locus_tag="ACFM6C_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015136 - sialic acid transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015739 - sialic acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HFC6158341.1"
                     /translation="MEAFKTLIWIVNIISALAVIVLVLLQHGKGADAGATFGSGSGSA
                     QGVFGSAGNANFLSRSTAVAATFFFATCMAMVYIHTHTTKHGLDFSNVQQTQQAPKPV
                     SNTEPSAPVPQQQK"
     gene            3217..3302
                     /locus_tag="ACFM6C_000858"
     tRNA            3217..3302
                     /locus_tag="ACFM6C_000858"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3251..3253,aa:Leu,seq:gag)
     gene            4104..4472
                     /locus_tag="ACFM6C_000859"
     CDS             4104..4472
                     /locus_tag="ACFM6C_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HFC6158342.1"
                     /translation="MRIFKNQWIVKFAKKHKINDSELLEAVERADNGLIDADLGGGVI
                     KQRIARQGQGRSGGYRSLILFKQADRAFFVYAFAKNDRENISDKELDVYRKAAAYYLK
                     YTRAELAALKEDGIITEIEL"
     gene            4469..4780
                     /locus_tag="ACFM6C_000860"
     CDS             4469..4780
                     /locus_tag="ACFM6C_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HFC6158343.1"
                     /translation="MKYKSEALAAIHEMMEGAYNIGAIDKKTMRGFDKSCLTEIKPLS
                     GGDIKAIREKEALSQAAFAIYLNVGKNHVSAWERGVKKPSGAALKLLTIVKNKGIEAI
                     A"
     gene            complement(4749..5003)
                     /locus_tag="ACFM6C_000861"
     CDS             complement(4749..5003)
                     /locus_tag="ACFM6C_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009345457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158344.1"
                     /translation="MPRGRGCFGFRARLRRALLSGYAVCTAAVSAWFDAVGHLCGYAL
                     IFGSAVLPVLAGIFSSASIVNLLILPFAKSATQWLRYPCF"
     gene            complement(5161..5895)
                     /locus_tag="ACFM6C_000862"
     CDS             complement(5161..5895)
                     /locus_tag="ACFM6C_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HFC6158345.1"
                     /translation="MNAAAAKDYMKTVELNKSAGNVDTTSRTARRVQAVFRRMLPYAD
                     AANNTGHRFDWKMTVFKNDELNAWAMPGGKMAFYTGIVDKLKLTDDEIAAIMGHEMTH
                     ALHEHGKNKVGQQILTNTAAQIGTQTILDKKPDTNPELVGLGMDILGTYGLTLPYSRS
                     LEEEADEGGMMLMAQAGYHPAAAVRVWEKMNQENDQNGFIYAITSTHPTNNARIENLK
                     RLLPTVMPVYEHSVRNKGRVNKNRRR"
     gene            complement(6112..6243)
                     /locus_tag="ACFM6C_000863"
     CDS             complement(6112..6243)
                     /locus_tag="ACFM6C_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl-tRNA synthetase"
                     /protein_id="HFC6158346.1"
                     /translation="MRDFDKPAEEAAEHAAEGAVKFIDGKPAKKIIAVPGRLANIVV"
     gene            complement(6236..6406)
                     /locus_tag="ACFM6C_000864"
                     /pseudo
     CDS             complement(6236..6406)
                     /locus_tag="ACFM6C_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270594.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
     gene            complement(6373..7164)
                     /locus_tag="ACFM6C_000865"
     CDS             complement(6373..7164)
                     /locus_tag="ACFM6C_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003761076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DpnI domain-containing protein"
                     /protein_id="HFC6158347.1"
                     /translation="MNLFFDTELGKQQNKATHKIRVMSEAWLEKNGYCPCCGSKPMKR
                     FANNKPVADLFCPNCHEQYELKSKNQKTIGNSVPDGAYRTMLERIRSDTNPNFFFLAY
                     KKADYSIRQLVLVPKHFITPDMIIPRNKGIKNRPHHIMCSINLAPLPESGKIFLIDDS
                     RIIEPETVLKKWQSNLFLRNQNAERKGWLLAVMKCIDQLPEEFTLSQMYEFENKLSIQ
                     FPQNNHIKDKIRQQLQILRDQNTIEFIGRGLYKKIDKLRPTLKAF"
     gene            complement(7393..10023)
                     /gene="leuS"
                     /locus_tag="ACFM6C_000866"
     CDS             complement(7393..10023)
                     /gene="leuS"
                     /locus_tag="ACFM6C_000866"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HFC6158348.1"
                     /translation="MQEHYRPAAIEPAAQKKWDDARIFNVSEDASKPKYYCLSMFPYP
                     SGKLHMGHVRNYTIGDVLSRFKRLNGFNVMQPMGWDAFGMPAENAAMKNNVAPAAWTY
                     DNIEYMKTQLKSLGFAIDWEREVATCKPEYYRWEQWLFTKLFEKGIVYRKNGTVNWDP
                     VDQTVLANEQVIDGRGWRSGALIEKREIPMYYFKITDYAEELLNDLDKLEHWPEQVKT
                     MQRNWIGKSRGMTVRFAVSDDSKQGLEGDYARFLQVYTTRPDTLMGATYVAVAAEHPL
                     ATAAAADKPELQAFIAECKAGSVAEADMATMEKKGVPTGRYVVNPLNGDKLEVWIANY
                     VLWGYGDGAVMAVPAHDERDFEFATKYNLLKKQVIAVGDNAFDANQWQEWYGDKENGV
                     LVNSGDLDGMNFQTAFNAIAAKLQSQDAGEPKTQYRLRDWGISRQRYWGCPIPIVHCE
                     KCGDVPVPADQLPVVLPENVVPDGMGSPLAKMPEFYETTCPCCGGAAKRETDTMDTFM
                     ESSWYFFRYMSPKFSDGMVSAEAAKYWGAVDQYIGGIEHAILHLLYARFFTKLMRDEG
                     LVNVGEPFERLLTQGMVVCETYYRENDKGGKDWINPADVELTFDDKGRPVSAVLKADG
                     LPVVISGTEKMSKSKNNGVDPQELINAYGADTARLFMMFAAPPEQSLEWSDSGVEGAH
                     RFLRRLWRTVYEYLKQGEAVKAFAGSQDGLSKELKDLRHKLHSTIAKVSDDYGRRQQF
                     NTAIAAVMELLNQYDKTDTGGEQGRAVAQEVLETAVRLLWPIVPHICETLWSELNGAK
                     LWEAGWPAVDEAALVKSEIEVMVQVNGKLRGKITVAADASKADLEAAALATEGAVKFM
                     EGKPAKKIIVVPGRLVNIVV"
     gene            10290..10805
                     /locus_tag="ACFM6C_000867"
     CDS             10290..10805
                     /locus_tag="ACFM6C_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HFC6158349.1"
                     /translation="MKIKQIVKPGLAVLAAGVLSACATKSNVKADGTTDNPVFPKPYS
                     VTLDNNRGTFPTYDELDLMRPGLTKDDIYKILGRPHYDEGMYGVREWDYLFHFHTPGV
                     GIDPENTSGVEDVTTCQYKVIFDKDKFARSFYWNPVFPKDAACPPPAPKAEPQVIIRE
                     IVPAKPKRIRQ"
     gene            10812..11255
                     /locus_tag="ACFM6C_000868"
     CDS             10812..11255
                     /locus_tag="ACFM6C_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HFC6158350.1"
                     /translation="MPPRLLLGILCCLPIFAPAHAQGQPDTVGDFIQKKKVIVDTSKA
                     ELCFADDRQCHPVLIGVATPKGTFGLTLNSTDKPGYGGEVIGFKQEGDFLFALHRVWN
                     QIPSERRNERIASPSVSDRIMTNGCINVSDAVYEKLRHYFVLEVI"
     gene            11424..13481
                     /gene="ppk1"
                     /locus_tag="ACFM6C_000869"
     CDS             11424..13481
                     /gene="ppk1"
                     /locus_tag="ACFM6C_000869"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009358 - polyphosphate kinase complex
                     [Evidence IEA];
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006799 - polyphosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HFC6158351.1"
                     /translation="MPEQNRILCRELSLLAFNRRVLAQAEDKNVPLLERLRFLCIVSS
                     NLDEFFEVRMAWLKREHKRCPQRRLDNGKMPSETIADVTEAARSLIRHQYDLFNNVLQ
                     PELAQEGIHFYRRRNWTGTQKKWIEDYFDRELLPILTPIGLDPSHPFPRPLNKSLNFA
                     VELDGTDAFGRPSGMAIVQAPRILPRVVPLPSELCGGGHGFVFLSSILHAHVGKLFPG
                     MNVKGCHQFRLTRDSDLTVDEEDLQNLRAAIQNELHDREYGDGVRLEVADTCPAYIRD
                     FLLAQFKLTAAELYQVKGPVNLVRLNAVPDLVNRPDLKFPTHTPGRLKALGKTASIFD
                     LVRQSPILLHHPYQSFDPVVEMMREAAADPDVLAVKMTIYRTGTRSELVRALMKAALA
                     GKQVTVVVELMARFDEANNVNWAKQLEEAGAHVVYGVFGYKVHAKMALVIRREDGVLK
                     RYAHLGTGNYHQGTSRIYTDFGIITADEQITADVNTLFMEITGLGKPGRLNKLYQSPF
                     TLHKMVIDRIARETEHAKAGKPARITAKMNSLIEPTVIEALYRASAAGVQIDLIVRGM
                     CTLRPGVKGLSENIRVRSIIGRQLEHARVYCFHNNGADDTFISSADWMGRNFFRRIET
                     AAPITAPELKKRVIREGLEMALADNTHAWLMQPDGGYIRAAPAEGESEADLQNDLWTL
                     LGG"
BASE COUNT         3353 a         3883 c         3373 g         3060 t
ORIGIN      
        1 gcctgcacat tgaaaatgcc gcccaagcaa actttcagtt tgccagcctc gtcctagccc
       61 tctcccacgg ggagagggga ttggggtgca ggctgccttt aaggttcagg caaattttaa
      121 cttcgttgat accgcgcttt agcttcgcag aagctgcact ttcagacgac cttttggaac
      181 accacaggta cacgcattta aggaatgccg tctgaaatgc ctgcctcaat aacgcatcat
      241 gttgccgtca atctcggccg cccatgcatc gatgccgccc tgaaggttgt acaggttttc
      301 aaaacccgcg tccgccaaat acatcgccgt atgcaggctg cggataccgt ggtggcaata
      361 caccacaagc ggcacatcat ccggcagctc gttctgccgc agcggaatca gattcatcgg
      421 gatatgcagc gcatttggca gcgaacaaac cgccgtttct tcatccgtac gcacgtccaa
      481 caaacaaaac atccgccctt cgtccatcca cgccttcaat tccgccgacc caagttgcac
      541 aatatccatc gcaccaccaa aaaaaaccaa gcaaaatgcc gtctgaagcc ccaaatccgc
      601 tttcagacgg catgacctgt caacatctta aaaatcgaaa ccgccaaacg gatcggcatc
      661 cttatcatcc aaatgcgcca ccaaggtatc gaacagcacc ttctcttcaa acacatcgcc
      721 cttgcgcgta atcaaaagcg cgcgctgaac aggcttgcgg cctacgataa ccgccatgcg
      781 tccgccatct tttaactgtt gtttcaacac atcaggcaca aggtttaccg caccgccgac
      841 ataaaccgca tcaaacggcg cacctgcgga aagttcggtc aacccgttgt tttgcacata
      901 atcgatattg tccaaaccca agccgtccaa caccgctttg gcgcggtttt gctgttcggc
      961 atcgatgtcg tccgacacca cacgaccagc caattttgcc aaaagcgcgg tcgcatagcc
     1021 cgaacccgtg ccgatttcca aaaccgtatc gtttttcgtc agcttcaagc cctgcgccag
     1081 ccgcgccacg actttcggct ccagcatctt atgaccgttg gcaagcggca gcgccatatc
     1141 cgcatacgcc aaaccctgca aatcctcatc gacaaaaagc tcgcgcggaa tctccgccaa
     1201 agcgtccaaa acgtcaaaat ccaatacatc ccacggacgg atttgctgtt cgaccatatt
     1261 gaaccgcgct ttttcaaaat ccatttagtg ctccgtcaaa taattgtttc aacaatggca
     1321 ggcattataa aaccacactc ccgccgcgcc aacttcggca cgcgccgccc gcccctttcc
     1381 atcactcaag ccgcctggcg cgaagcctca aaccgcttct ccaaaatctt cgccagttcg
     1441 cccaaataca aagcatctgt ctcatcaaac tgcgccaaat gttcgctgtc cgcgtccaac
     1501 acgccgatac agcggccgtc tgaaaacagc ggcacgacaa tctccgaacg cgacaaagac
     1561 gaacaggcaa tatggtcggg atgcgcgtcc acatccccga cgaccaccgt cccgcccttc
     1621 gcccaagcct gaccgcacac cccgcgaccg aacggaatcc gcgtacacgc caaaggcccc
     1681 tgaaacggtg ccaaaaccaa ttcgtccgaa cgcgtatcga ccaaataaaa acccacccaa
     1741 aaccaaccga acgcctcctt caaaaccgcc gccgtgttcg ccaaattcgc cacccaatcc
     1801 gtctcgtccg ccaccacaga ctcaatctgc ggcaacacct cccgataaag cgcggccttg
     1861 tccgaagccg aaaaatgaag cgcgtgcatc acatctccta tagttgcata catatcaggc
     1921 ggccattata aaacaacctg cccgaaacaa cattccaaac cgcccccgca gccgcccgcc
     1981 ccaagttgcg aacccgccgc atatccacta aacttcacat tgcaacgcgc cacacgcggc
     2041 agacagaaaa aacacgacac ggagcaaaaa agatgtatca ccaaatcgga atgtgggatc
     2101 aaaaatgggt catcggcaac tggaaaatga acggccggct ccagaacaac aattcgctca
     2161 tgcaccgctt ccgcatcctc cccaccgccg aacgcgtcct catcggactc gccgccccga
     2221 ccgtttacct gctgcaactg cacaacgcca tgcaaatcgt cttaaacaac cgcatcctca
     2281 cctgcgccca agacgtgagc cgcttccccg acaacggcgc gtacaccggc gaagtgtccg
     2341 ccgaaatgct cgccgacacc ggcacagaca tcgtcctcat cggacactcc gaacgcagcc
     2401 tttatttcgg cgaaaaaaac gaaatccaac gccgcaaaat ggaaaacgtc ctcaacgtcg
     2461 gactcatccc gttattgtgc gtcggcgaaa gcctcgaaga gcgcgaagcc ggcaaagaac
     2521 acgaagtcat cgcccatcag ctttccatcc tgcaagggct ggataccaaa aacatcgccg
     2581 tcgcctacga acccgtctgg gcgatcggca ccggcaaagt cgccaccgtc gaacagattg
     2641 ccgatatgca cgcattcatc tacaaagaaa tcttgtcttt gtgcggaagc gatgttaaaa
     2701 tccgcgtcct ttacggcgga agtgtgaaag cggacaacgc ggccgacatc ttcgcagtac
     2761 cttatgtgga cggcgcactc gtcggcggcg cgtcattgtc gtacgactcc tttaccgcca
     2821 tcatcagtgc cgcacaaaat gcgtagaaaa atatggaagc cttcaaaacc ctaatttgga
     2881 ttgttaatat aatttccgct ttggccgtca tcgtgttagt attgctccaa cacggcaaag
     2941 gcgcggatgc cggcgcgact ttcggatcgg gaagcggcag cgcgcaaggc gtattcggct
     3001 ctgccggcaa cgctaacttc ctcagccgct cgaccgccgt tgcagcaaca tttttctttg
     3061 caacctgcat ggctatggtg tatattcaca cccacacgac aaaacacggt ttggacttca
     3121 gcaacgtaca acaaactcag caagcaccca aacccgtaag caataccgaa ccttctgccc
     3181 ctgttcctca gcagcagaaa taacagtttt tcaaatgccg acatggtgaa attggtagac
     3241 acgctatctt gagggggtag tggccgtagg ctgtgcgagt tcaaatctcg ctgtcggcac
     3301 caacacacaa aacgcttaga aattctaagc gttttttttc gtttaatcct gtctaatgcc
     3361 gtcaaccaat cccaatcaat acaaggattt caggctgatt gttatcctgc cgtccccctt
     3421 cctgacagtg caatcccgtc caatccgccc taattgaact aacctgattt tttacagcat
     3481 ccgaaaatac cgcgagaaaa taccgtaaaa ataaagctga acgaccacca aatcaggaat
     3541 gccaagcggg aaatagcttg cggggaatac tgacgcaccg tagggaatga gggggaaacc
     3601 gtccaagatg cagagcggtt ttttttgggt ttttggaaaa aacctatact atagtggatt
     3661 aaatttaaac cggtacggcg ttgcctcgcc ttgccgtacc ggtttaaatt taattcacta
     3721 taaaataaga aaaagataaa aaattggtaa caaatgcggt aacaaatggt aacgaatcgg
     3781 taacaacttt tggggttttc cggtttttca ccgtcttggc agtgggagcg tagcggaatg
     3841 aaaagccaaa acgcacggaa ccgcgcctat tttgagcagg aatggcggtt aaaccgcttg
     3901 gttatatacg gggcatagga agacagcgaa acgcgctaaa aacgcaattt gagccattaa
     3961 aagcgattga ttaaaaaata atcaggttag ccgccggtgt ttcaggcggc ataaacggag
     4021 aaattgcggg gcataaaaaa ggcagcttgc cgtgttgtct gtctctggta taattccaag
     4081 tatcactaat caacggctac acaatgcgga tattcaaaaa ccaatggata gtgaaatttg
     4141 ccaagaagca caaaatcaac gattccgagc tgctggaagc ggtagagcgg gcggataacg
     4201 ggctgataga cgcagattta ggcggcggtg tgattaagca gcgcatagca aggcaaggac
     4261 aaggcagaag cggcggctat cgcagcctga tattgttcaa acaggcagat agggcatttt
     4321 tcgtttacgc ctttgccaag aacgacaggg aaaacatttc ggataaagaa ctggacgttt
     4381 accgaaaagc cgccgcatat tatctgaaat acacgcgggc agagctggcg gctttgaaag
     4441 aagacggcat tatcacggag atagaattat gaaatacaaa agcgaggcat tagccgccat
     4501 tcatgaaatg atggaagggg cttacaacat cggcgcaatc gacaaaaaga ctatgcgcgg
     4561 ctttgacaag tcctgcctga ccgaaatcaa accgttgagc ggcggggaca tcaaggcaat
     4621 cagggagaag gaggcactat cgcaagccgc tttcgccatc tatctcaacg tgggaaaaaa
     4681 tcacgtttcg gcttgggagc ggggcgttaa aaagccgagc ggcgcggcgt tgaagctgct
     4741 gaccatcgtc aaaaacaagg gtatcgaagc cattgcgtag ccgacttggc aaacggcaaa
     4801 atcagcaagt tcacaataga cgcgctgctg aatatgcctg ccaagacagg caagaccgcc
     4861 gaaccgaata tcagggcata gccgcacaaa tgcccgaccg catcaaacca agccgaaacg
     4921 gcggcggtgc agacggcata gcccgacagc aaggcacggc gcagacgggc gcgaaacccg
     4981 aaacatcccc gaccgcgagg cacggggatt ttttgcgccc gttgcagggg gattagattt
     5041 aagcggcgcg ggcttgaagg caaaacgggc ggggcgcaga actgtttaaa tgccgtctga
     5101 atctcaaacg atttcagacg gcattttgaa acaacggctc aaattctcga ctcccttccc
     5161 ttaacgccga cggtttttat taacgcgccc cttatttctg acactgtgct cataaaccgg
     5221 cataacggtc ggcaacaacc gttttagatt ttctatacgg gcattgtttg tcggatgagt
     5281 agaggtaata gcataaataa agccgttttg gtcgttttcc tgattcattt tttcccaaac
     5341 cctgacagcg gccgccggat gatagcctgc ctgcgccatc aacatcattc ccccctcatc
     5401 ggcttcttct tccaagctgc ggctataagg caaggtaaga ccgtacgtcc ccaaaatatc
     5461 catacccaat ccgaccaatt ccggattagt gtccggtttt ttgtctaata tagtctgcgt
     5521 gcctatctgc gccgccgtat tggtcaaaat ttgttgcccg accttatttt taccgtgttc
     5581 atgcagggcg tgcgtcattt catgccccat aatggcggca atttcgtcat cggtcagctt
     5641 gagtttgtcg actatccccg tataaaacgc catttttcca ccgggcatcg cccacgcgtt
     5701 cagctcatcg tttttgaaaa ccgtcatttt ccagtcaaac ctatggccgg tattatttgc
     5761 cgcatcggca taaggcagca tacgtcgaaa tactgcctgc accctgcggg ctgttctgga
     5821 tgtggtatcg acattgccgg cagacttgtt caactcaacc gttttcatat aatctttggc
     5881 agccgcagcg ttcattgtgg cagaatcatg accgtaaaca tcagcaacga ccgcacaacc
     5941 tcccagtatc gaaatgactg ccgataggca aactatctgt ctaaaggaag gaaggaagga
     6001 aatttcatat ttaggtttac tccttaaaaa attaaatttc aaaaaatgcc gtctgaatcc
     6061 aaaacggatt tcggacggca tcttaacatt gtttaatgtt tttaaaaaga tttacaccac
     6121 gatgttcgcc agtctgcccg gtacggcgat gattttcttg gcaggcttgc cgtctatgaa
     6181 tttcaccgcg ccttcagcgg cgtgttcggc agcttcttca gccggtttat cgaaatcacg
     6241 cataaattgc caataattct ccgactttct tacgactact acctttggcg gcaatattgc
     6301 gctgtacttc aactgttttc agaatggcag aagaataaat atcccttgtg aattcagtat
     6361 catgatttga aatcaaaacg ccttgagagt cggacgcaat ttgtcgattt ttttgtaaag
     6421 tccgcgacca atgaattcga tcgtattttg gtcgcgcaaa atttgcaact gttggcggat
     6481 tttgtctttg atatggttgt tttggggaaa ttggatggat agtttgtttt caaattcata
     6541 catttgcgac aatgtgaatt cttcggggag ttggtcgata catttcataa cagccaaaag
     6601 ccagcctttg cgctccgcat tttggttgcg taaaaacagg ttggattgcc attttttcag
     6661 aacggtttcg ggttcgataa tgcgggaatc gtctattaag aatatttttc cgctttcagg
     6721 caaaggggcg agattgatgg aacacataat gtggtgcggc cggtttttaa tgcctttatt
     6781 tctaggaata atcatatccg gcgtgatgaa atgtttgggt acaagcacca attgccgtat
     6841 ggagtaatcc gcttttttat atgcaagaaa gaaaaagttg gggttggtat ctgaccggat
     6901 gcgctccaac atagtgcgat atgcaccgtc aggcacgctg ttgcctatgg ttttttgatt
     6961 tttactcttt aattcatatt gctcgtggca atttgggcaa aagaggtctg caacaggttt
     7021 gttattggca aatctcttca tcggcttgct tccgcaacag gggcagtagc cgtttttttc
     7081 cagccaagcc tcgctcatta cacggatttt gtgggttgct ttattttgtt gctttcccaa
     7141 ttcagtatcg aaaaataaat tcatgttttg gattttgaga ttaagtttta gtggattaac
     7201 aaaaatcagg acaaggagac gaagccgcag acagcagggc aaggcggggc aacgccgtac
     7261 cggtttaaag ttaatccact atatttgagg tctgtcatgc ggacaaccca atctgcctta
     7321 aaaaggccgt ctgaaaccct gtttccaagt ttcagacggc ctttatccgt atggctaaac
     7381 cttaaaagcg gcttagacga cgatattcac caagcgtccg ggaacgacga tgattttctt
     7441 cgcgggtttg ccttccataa atttcaccgc gccttcggtg gcgagtgcgg cggcttcgag
     7501 gtcggctttg gatgcgtcgg cggcgacggt gattttgccg cgcagtttgc cgttgacttg
     7561 aaccatgact tcgatttcgg atttgaccaa ggcggcttcg tcgactgccg gccagcctgc
     7621 ttcccacagt ttcgcgccgt tcaattcgct ccacagggtt tcgcagatgt gcggcacgat
     7681 gggccacagc aggcgtacgg cggtttccaa tacttcttgg gcgacggcgc ggccttgttc
     7741 gccgccggtg tcggttttgt cgtattggtt gagcaattcc atcacggcgg cgatggcggt
     7801 gttgaactgc tggcggcggc cgtagtcgtc gctgactttg gcgatggtag aatgcagttt
     7861 gtggcgcagg tctttgagtt ctttagacaa accgtcttgg ctgcctgcga acgctttgac
     7921 tgcttcgcct tgcttcaagt attcgtaaac ggtacgccac aggcggcgca ggaagcggtg
     7981 tgcgccttcg acgccgctgt cgctccattc gagggactgt tcgggcggtg cggcgaacat
     8041 catgaacagg cgggcagtgt ccgcgccgta ggcgttaatc agctcttgcg gatcgacgcc
     8101 gttgtttttg gacttggaca ttttttccgt gccgctgatg acgacgggca gaccgtcggc
     8161 tttgaggacg gcggaaacag ggcggccttt gtcgtcgaac gtcagctcga catcggcggg
     8221 gttgatccaa tctttgccgc ctttgtcgtt ttcgcggtag taggtttcgc aaacgaccat
     8281 gccttgcgtc agcaggcgtt caaacggttc gccaacattg accaagcctt cgtcgcgcat
     8341 cagtttggtg aagaaacgcg cgtacaggag gtgcaaaatg gcgtgttcga taccgccgat
     8401 gtattggtcg accgcgcccc agtatttcgc ggcttctgcc gataccatgc cgtctgaaaa
     8461 cttgggcgac atatagcgga agaagtacca gcttgattcc atgaaggtgt ccatggtgtc
     8521 ggtttcgcgt ttcgccgcgc caccgcagca tgggcaggtg gtttcgtaaa actcgggcat
     8581 ttttgccaaa ggcgaaccca tgccgtcggg tacgacgttt tcaggcagga cgacgggcag
     8641 ttggtcggct gggacgggta cgtcgccgca tttttcacaa tggacgatgg gaatcgggca
     8701 gccccagtag cgttgacggg aaatacccca gtcgcgcagg cggtattggg ttttcggttc
     8761 gcccgcgtct tggctttgca gcttggcggc gatagcgttg aaggccgtct gaaaattcat
     8821 gccgtccaag tcgccgctgt tgaccaatac gccgttttct ttgtcgccgt accattcttg
     8881 ccattggttt gcgtcgaatg cgttgtcacc gacggcaatg acttgttttt tcagaagatt
     8941 gtatttggtg gcgaactcga aatcgcgttc gtcgtgcgcc ggaacagcca tcaccgcgcc
     9001 atcgccgtag ccccacaata catagttggc aatccacact tccagcttgt cgccgttgag
     9061 cggattgacg acgtagcggc cggtcggcac gccttttttc tccatcgtcg ccatatcggc
     9121 ttcggcaacc gagccggctt tgcactcggc gataaatgcc tgcaattcgg gtttgtcggc
     9181 ggcggctgcg gttgccagcg gatgctcggc ggcaacggca acataagtcg cgcccatcag
     9241 cgtgtcgggg cgggtggtat aaacttgcag gaatctcgcg taatcgcctt ccaaaccttg
     9301 tttgctgtcg tctgaaacgg caaagcgcac ggtcataccg cgagatttgc cgatccagtt
     9361 gcgctgcatg gttttgactt gttccggcca gtgttccagc ttgtccaaat cgttgagcaa
     9421 ctcttcggcg taatccgtga ttttgaagta atacatcggg atttcgcgtt tttcaatcaa
     9481 cgcacccgaa cgccagccgc gcccgtcgat gacttgctcg ttggccaata cggtttggtc
     9541 gactgggtcc cagtttaccg tgccgttttt gcgatacacg atgccttttt caaacagctt
     9601 ggtaaacagc cattgttccc agcggtagta ttcgggtttg caggtagcga cttcgcgctc
     9661 ccagtcaatc gcaaaaccca ggcttttgag ctgggttttc atgtattcga tgttgtcgta
     9721 agtccaagcg gcgggggcga cgttgttttt catcgccgca ttttccgcag gcataccgaa
     9781 cgcgtcccaa cccataggtt gcatgacgtt gaagccgttt aagcgtttga agcggctcaa
     9841 tacgtcgccg atggtgtagt tgcgcacatg ccccatgtgc agcttgccgc tggggtaggg
     9901 gaacatggag aggcagtagt atttgggttt ggaagcgtct tcggagacgt tgaaaatacg
     9961 ggcgtcgtcc cattttttct gcgccgcagg ctcgatggcg gcgggccggt aatgttcttg
    10021 catggtcatt ctgtttttcg cttgaaaacg ttaggaattt aaaggaggaa ttataacagg
    10081 ttgccgatgt cggcgaatcg gcaaattgcc ggcaggatgc gtaaattcgc acgcgcatca
    10141 ttccgtatgc cgtacaaata caccgcgttt actgatacgc acgtttttta tgctaatatt
    10201 acaaaccaaa atcaaatgtt taaaactctc ctgatgcggc tcttccgaac aaaaggcaga
    10261 cgggcatcgg gtaaaagagg attctgcata tgaaaatcaa acaaatcgtc aaaccgggct
    10321 tggcagtatt ggcggcgggc gttctgtctg cctgcgcaac caaaagcaac gtcaaagccg
    10381 acggaacgac cgacaatccg gttttcccga aaccctattc cgtaacgctc gacaacaatc
    10441 gcggtacatt cccgacctat gacgaattgg acttgatgcg tcccggtctg accaaagacg
    10501 acatctacaa aatcctgggt cgcccgcatt acgacgaagg tatgtacggc gtgcgcgaat
    10561 gggattacct gttccacttc cataccccgg gcgtaggtat cgaccctgaa aacacttccg
    10621 gcgtagaaga tgttactacc tgccaataca aagtgatttt cgataaagac aaatttgccc
    10681 gcagcttcta ctggaacccc gtcttcccga aagatgccgc ctgtccgccg cccgcaccca
    10741 aagccgagcc gcaagtcatc atccgcgaaa tcgtgccggc aaaaccgaaa cgtatccgcc
    10801 aataatacgc aatgccgccc cgcctgcttt tagggatatt gtgctgcctg ccgatttttg
    10861 cccccgcgca cgcgcagggg cagccggata cggtcggcga ctttatccaa aagaaaaaag
    10921 tcatcgtcga tacatccaaa gcggaactct gttttgccga tgacaggcag tgccaccccg
    10981 tcctcatcgg tgttgccacg cccaagggga cgttcgggct gacgctgaac agtaccgaca
    11041 agcccggata cggcggcgaa gtcatcggtt tcaagcagga gggtgatttt cttttcgccc
    11101 tgcaccgcgt ttggaatcag ataccgtcgg aaaggcggaa cgaacgcatc gcctccccgt
    11161 ccgtgtccga caggattatg accaacggct gcatcaacgt cagcgatgcg gtgtacgaaa
    11221 aactgcgtca ttattttgtg ttggaagtga tttgaaacag acggataccg cacgcgccgg
    11281 tatctgtttt cacattgccc cgatgcctga aacagactgt ccgccacgtc atgccgtctg
    11341 aaaccggcgc agatgccgcc aagccttcag acggcattgc ctgcccgctc cgaccgaaca
    11401 acaaccatct ttgggagaac cttatgcccg aacaaaaccg catcctctgc cgcgaactaa
    11461 gcctgctggc attcaaccgc cgcgtgttgg cacaggcgga agacaaaaac gtcccccttt
    11521 tggaacgcct gcgcttcctg tgcatcgttt catccaacct cgacgagttt ttcgaagtcc
    11581 gtatggcgtg gctgaagcgc gaacacaaac gctgcccgca gcgcaggctg gacaacggca
    11641 aaatgccgtc tgaaaccatc gccgacgtta ccgaagcggc gcgctccctg atacggcacc
    11701 agtacgacct gttcaacaac gtccttcagc ccgagctggc acaagaaggc atccattttt
    11761 accgccgccg caactggacg ggcacgcaga aaaaatggat cgaagactat ttcgaccgcg
    11821 aactgctgcc gatcctgacc cccatcggac tcgacccgtc ccaccccttc ccgcgaccgc
    11881 tgaacaaatc gctcaacttc gccgtcgaac tcgacggcac ggacgcattc ggcaggcctt
    11941 cggggatggc gattgtgcag gcaccgcgca tcctgccgcg cgtcgttccc ctgccgtccg
    12001 aactgtgtgg cggcggacac ggcttcgtct tcctgtcgtc catcctccac gcccacgtcg
    12061 gcaaactctt cccgggcatg aacgtcaaag gctgccacca gttccgcctg acgcgcgaca
    12121 gcgacttgac cgttgacgaa gaagacctgc aaaacctccg cgccgccatc caaaacgaac
    12181 tgcacgaccg cgaatacggc gacggcgtgc ggctcgaagt cgccgacacc tgtcccgcct
    12241 acatccgcga ctttctgctc gcgcaattca aactgaccgc cgccgaactc tatcaggtca
    12301 aaggcccggt caacctcgtg cgcctcaacg ccgtccccga cctagtcaac cgccccgatt
    12361 tgaaatttcc cacacacacg ccgggcagac tgaaagcctt gggcaaaacc gcgtccatat
    12421 tcgatttggt gcgccaatcg cccatcctgc tgcaccaccc ctaccaatcg ttcgaccccg
    12481 ttgtcgaaat gatgcgcgaa gctgccgccg accccgacgt gcttgccgtc aaaatgacga
    12541 tttaccgcac cggcacgcgt tccgaactcg tccgcgccct gatgaaggcg gcactcgccg
    12601 gcaaacaagt aaccgtcgtc gtcgaactga tggcgcgttt tgacgaagcc aacaacgtca
    12661 actgggcgaa gcagctcgaa gaggcgggcg cgcacgtcgt gtacggcgtg ttcggctaca
    12721 aagtccacgc caagatggca ctggtcatcc gccgcgaaga cggcgtactc aagcgttacg
    12781 cccacctcgg cacgggtaac taccaccaag gcacatcgcg catctacacc gacttcggca
    12841 tcattaccgc cgacgaacaa atcaccgccg atgtgaacac attgtttatg gaaatcacag
    12901 gcttgggcaa acccgggcgg ctgaacaaac tctaccaaag cccgtttacc ctgcacaaaa
    12961 tggttatcga ccgcatcgca cgcgaaaccg aacacgcaaa agccggcaaa ccggcgcgga
    13021 ttaccgccaa gatgaattcg ctcatcgaac cgaccgtcat cgaagccctg tatcgggcaa
    13081 gcgcggcagg cgtacaaatc gatttgattg tgcgcggtat gtgcaccttg cgcccgggtg
    13141 taaaaggctt gtccgaaaac atccgcgtcc gctccatcat cggcaggcag ctcgaacacg
    13201 cgcgcgtgta ttgcttccac aacaacggcg cggacgatac ctttatctcc agcgcggatt
    13261 ggatggggcg caacttcttc cgccgcatcg aaaccgccgc gccgattacc gcgcccgaac
    13321 tcaaaaaacg cgtcatccgc gaaggtttgg aaatggcatt ggcagacaat acgcacgcgt
    13381 ggctgatgca gcccgacggc ggctatatcc gcgccgcacc tgccgagggc gaatccgaag
    13441 ccgacctgca aaacgatttg tggacactgc tcggaggctg acccgcaccg ccccaatcaa
    13501 aaaccatgcc gtctgaaacc tttccgtttc agacggcatg gttttacagc aatctaaaca
    13561 gggcggaccg gagtcaaaaa cacaccttcg ccatttccgc ataagcactt cccctatacg
    13621 ctcccaaccc caatccgccg cattccagac ggcattatag tggattaaa
//
LOCUS       DAXHPV010000040        13534 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.040, whole genome shotgun sequence.
ACCESSION   DAXHPV010000040 DAXHPV010000000
VERSION     DAXHPV010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13534)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13534)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13534
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.040"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            278..5734
                     /gene="iga"
                     /locus_tag="ACFM6C_000870"
     CDS             278..5734
                     /gene="iga"
                     /locus_tag="ACFM6C_000870"
                     /EC_number="3.4.21.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IgA-specific serine endopeptidase
                     autotransporter"
                     /protein_id="HFC6158352.1"
                     /translation="MKTKRFKINAISLSIFLAYALTPYSEAALVRDDVDYQIFRDFAE
                     NKGKFFVGATDLSVKNKQGQNIGNALSNVPMIDFSVADVNKRIATVVDPQYAVSVKHA
                     KAEVHTFYYGQYNGHNDVADKENEYRVVEQNNYKPHKAWNASNLGRLEDYNMARFNKF
                     VTEVAPIAPTDAGGGLDTYKDKNRFSSFVRVGAGRQLVYEKGAYHQEGKEKGYDLRDL
                     SQAYRYAIAGTPYKDINIDQTMNTEGLIGFGNHNKQYSAEELKQALSQDALTNYGVLG
                     DSGSPLFAFDKQKNQWVFLGTYDYWAGYGKKSWQEWNIYKKEFADEIKQRDNAGTIKG
                     YGEHHWKTTGTNSHIGSTAVRLAGNERGANNGQNVTFENNGTLVLDQNINQGAGGLFF
                     KGDYTVKGINNDITWLGAGIDVADGKKVVWQVKNPNGDRLAKIGKGTLEINGTGVNQG
                     QLKVGDGTVILNQKADSNQKVQAFSQVGIVSGRGTLVLNSSNQINPDNLYFGFRGGRL
                     DANGNDLTFEHIRNVDEGARIVNHNTGHTSTITLTGKSLITNPNSLSVHSIQNDYDED
                     DYSYYYRPRRPIPQGKDLYYKNYRYYALKSGGSVNAPMPENGQTENNDWILMGSTQEE
                     AKKNAMNHKNNQRISGFSGFFGEENGKGHNGALNLNFNGKSAQNRFLLTGGTNLNGKI
                     SVTQGNVLLSGRPTPHARDFVNKSSARKDAHFSKNNEVVFEDDWINRTFKATEIAVNQ
                     SASFSSGRNVSDITANITATDNAKVNLGYKNGDEVCVRSDYTGYVTCNTDNLSDKALN
                     SFGATQINGNVNLSQNAALTLGKAALWGQIQGQGNSRVSLNQHSKWHLTGDSQVHNLS
                     LADSHIHLNNASDAQSANKYHTLKINHLSGNGHFHYLTHLAKNLGDKVLVKESASGHY
                     QLHVQDKTGEPNQEGLNLFDASSVRDRSHLSVSLANNHVDLGALRYTIKTENGITRLY
                     NPYAENRRRVKPAPSPATNTASQAQTDSAQIAKPQNIVVAPPSPQANQAEEAKRQQAK
                     AEQVKRQQAEAERKSAELAKQKAEAEREARELATRQKAEQERSSAELARRHEKEREAA
                     ELSAKQKVEAEREAQALAVRRKAEAEEAKRQAAELARRHEKEREAAELSAKQRVGEEE
                     RRQTAQSQPQRRKRRAAPQDYMAASQDRPKRRGHRSVQQNNVEIAQAQAELARRQQEE
                     RKAAELLAKQRAEAEREAQALAARRKAEAEEAKRQAAELAHRQEAERKAAELSANQKA
                     AAEAQALAARQQKALARQQEEARKAAELAVKQKAETERKTAELAKQRAAAEAAKRQQE
                     ARQTAELARRQEAERQAAELSAKQKAETDREAAESAKRKAEEEEHRQAAQSQPQRRKR
                     RAAPQDYMAASQNRPKRRGRRSTLPAPPSPSFDSSAYAAPRALHNPDWYENDYEEIPL
                     DALEDENVSESVDTSDKQPQDNTELHEKYENDYEEIPLDALEDEDVSESVDTSDKQPQ
                     DNTELHEKVETVSLQPRAAQPRAQAAAQPQAQADAVSTNTNSALSDAMASTQSILLDT
                     GASLTRHIAQKSRADAEKNSVWMSNIGYGRDYASAQYRRFSSKRTQTQIGIDRSLSEN
                     MQIGGVLTYSDSQHTFDQASGKNTFVQANLYGKYYLNDAWYVAGDIGAGSLRSRLQTQ
                     QKANFNRTSIQTGLTLGNTLKINQFEIVPSAGIRYSRLSSADYKLGNDSVKVSSMSVK
                     TLTAGLDFAYRFKVGNLTVKPLLSAAYFANYGKGGVNVGGNSFAYKADNQQQYSAGAA
                     LLYRNVTLNVNGSITKGKQLEKQKSGQIKIQIRF"
     gene            complement(5912..7114)
                     /gene="trpB"
                     /locus_tag="ACFM6C_000871"
     CDS             complement(5912..7114)
                     /gene="trpB"
                     /locus_tag="ACFM6C_000871"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HFC6158353.1"
                     /translation="MKNYHAPDEKGFFGEHGGLFVSETLIPALQELADAYKAAKNDPS
                     FWEEFHRDLKHYVGRPSPVYHAARLSEHLGGAQIWLKREDLNHTGAHKVNNTIGQALL
                     AKRMGKKRVIAETGAGQHGVASATVAARFGMTCDVYMGADDIQRQMPNVFRMKLLGAN
                     VVGVDSGSRTLKDAMNEAMREWVARVDDTFYIIGTAAGPAPYPEMVRDFQCVIGNEAK
                     EQMLEAIGRQPDVAVACVGGGSNAIGLFHPYIGEENVRLVGVEAGGLGVNTPDHAAPI
                     TSGAPIGVLHGFRSYLMQDENGQVLGTHSVSAGLDYPGIGPEHSHLHDIKRVEYTAAK
                     DEEALEAFDLLCRFEGIIPALESSHAVAWAVKNAPKMGKDQVILVNLSGRGDKDINTV
                     AKLKGIKL"
     gene            complement(7197..7886)
                     /locus_tag="ACFM6C_000872"
     CDS             complement(7197..7886)
                     /locus_tag="ACFM6C_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HFC6158354.1"
                     /translation="MLFEGLPCLAVWCKNRLSAVLPVGGLNVSENLLEIETHPFDSVL
                     PPKAAVMMMGTFPPKEDKRAMQFHYPNFQNDMWRVYGLVFFNDAAHFQRLSEKAFDAE
                     KIKAFLHERGIASCPTVLKAAREHGNASDKFLKVVETVDLAAVLAQMPECRHICTTGG
                     KATEILLDIQGGGIKMPKTGETVPFPFAGRDLTLTRLPSTSRAYPLSLAKKAAVYRAF
                     FEMAGLCEKQL"
     gene            8083..8862
                     /gene="rsmA"
                     /locus_tag="ACFM6C_000873"
     CDS             8083..8862
                     /gene="rsmA"
                     /locus_tag="ACFM6C_000873"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HFC6158355.1"
                     /translation="MKEHKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLA
                     AITEPLAKKLNRLHVVEIDRDIVCRLKTLPFADKLVIHEGDVLQFDFNGIAGKKKIVG
                     NLPYNISTPLLFKLAEVADDVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDM
                     EMLIDVPPESFDPAPKVDSAVVRMIPVKHRIGKADDFEHFAKLVKLAFHQRRKTIRNN
                     LKELAGDDDLQAVGINSQDRAEHIAPEKYVALSNYLAGKAV"
     gene            9035..9763
                     /locus_tag="ACFM6C_000874"
     CDS             9035..9763
                     /locus_tag="ACFM6C_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HFC6158356.1"
                     /translation="MIKFKNVHKHFKDLHVINGVNLEIKKGEVVVVCGPSGSGKSTLI
                     RTVNQLESIESGEIWVDGVNVADPKTDLNKIREEVGFVFQSFNLYPHLTVLENITLAP
                     MKVKGQNAEQAEKKAMELLERVGLAHKKDAFPSQLSGGQQQRVAIARGLAMEPRVMLF
                     DEPTSALDPEMVGEVLKVMKDLAESGMTMMCVTHEMGFAREVADRVLFVDKGQILEDE
                     TPEAFFTNPKHERAKQFLQQVMTH"
     gene            9836..10195
                     /locus_tag="ACFM6C_000875"
     CDS             9836..10195
                     /locus_tag="ACFM6C_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158357.1"
                     /translation="MYFVDRTAVVLKPTVRFLEWLKSTDENMPDLTIEQLRANCSVFL
                     VPQFDEPEAVVSYFDERYRQIFEAELAGWDIDKDKWPQDMGLKAFWEFFDIEIHDMVL
                     DMEEAELNITPVFDNMM"
     gene            10200..10640
                     /locus_tag="ACFM6C_000876"
     CDS             10200..10640
                     /locus_tag="ACFM6C_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YgfX"
                     /protein_id="HFC6158358.1"
                     /translation="MRAFQTALRPSRILNILTVSLHAASLAVCLTWFYGWMMWFGLAA
                     LVASYAYSLRITNLKHRHAITAITIDRDGQAEIVSGKDKTAATLAGSSMVTPYALFLQ
                     WDTGGTTVSQCIIPDMTDKESYRRLKVWILWRQPKKTAETDTPS"
     gene            10672..11946
                     /gene="folC"
                     /locus_tag="ACFM6C_000877"
     CDS             10672..11946
                     /gene="folC"
                     /locus_tag="ACFM6C_000877"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004326 - tetrahydrofolylpolyglutamate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HFC6158359.1"
                     /translation="MKTLQDWLSHLETAHSGGLIDMGLERVGEVKKRMKLTPQCPVVV
                     VAGTNGKGSVCAYLTQIYKQAGYKTGTLTSPHLLRYNERIAINAEPVSDDTIIASFER
                     IEAARSEISLTYFEFNTLAAVDIFMREQVDVMILEVGLGGRLDAVNAFDGDCAVVTSV
                     DLDHQAFLGDTVEQVSFEKAGVFRSGKPAICGQNPAPESLLSHAEAIGAKLLMVQRDF
                     EFHAMENIQWNYRFRPQHSDDPARNRNALPFPALRGTYQLSNAACTLTVLECLNDKLP
                     VDIGAIKRGLLLVENPGRFQVLPGRPLTVLDVGHNPHAARALRRSLINLAFAQKRTAV
                     FSMLSDKDIDGVLEIVKDQFDEWYIAPLDVPRGMTLESLQNKLHEHSIENIQTFAAVR
                     EAYRAAASKAGENDRIVVFGSFHTVADVMSVL"
     gene            11959..12966
                     /gene="ftsN"
                     /locus_tag="ACFM6C_000878"
     CDS             11959..12966
                     /gene="ftsN"
                     /locus_tag="ACFM6C_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HFC6158360.1"
                     /translation="MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSS
                     GPAEQTAGETSGVENKAAGAAQTPALKSAADKPQDLAGEDKPSAADSEISEPENVGAP
                     LVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
                     KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKA
                     DKAESKKTAEKDRSDGKKHETAQKTDKADKTKTAEKEKSEKSGKKAAIQAGYAEKERA
                     LSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKLRVHGIAGQVTN
                     E"
     gene            12959..13456
                     /locus_tag="ACFM6C_000879"
     CDS             12959..13456
                     /locus_tag="ACFM6C_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009403 - toxin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HFC6158361.1"
                     /translation="MNNLPVADILIFAIIAACIVLSAMRGVIAEAGSMAAWVVSFFFA
                     KLFAASFADLAFASFQPRLFALALSFISLFVIACLIQKMLRSLLTGAVSAVGLGFANR
                     ILGGVFGALKGVLIITLLVMLASKTDLPDTEEWQQSYTIPFFVSLSEAVLKHADDRDG
                     ALEDD"
BASE COUNT         3940 a         3557 c         3285 g         2752 t
ORIGIN      
        1 ccaaaatcag aaacctaaaa tcccgtcatt cccgcacaag cgggaatcca aaaacaaaaa
       61 gccgcagaaa tttaacggaa gaaccgaacc ccgaaaaccg gctccccgct ttcgcttgaa
      121 taacagaaca aaggaagcgg aaataaaaac atcgggattc tttttttaaa ttggcaataa
      181 aacaccaaaa tgaatgattt acacaacaaa aaatagtcaa caccaccaaa ccggcgtaaa
      241 atacaaaaca ctatcactct taaaacggta aaaccttatg aaaaccaaac gttttaaaat
      301 taacgccata tccttatcca tctttcttgc ctatgccctt acgccatact cagaagcggc
      361 attggtcaga gacgatgtcg attatcaaat attccgtgac tttgcagaaa acaaaggcaa
      421 attttttgtc ggcgcaaccg atttatcagt gaaaaacaaa caaggtcaaa acatcggcaa
      481 cgcattatcc aacgtaccga tgattgattt tagcgttgca gatgtcaaca aacgcatagc
      541 aacggtagtc gatccccaat atgccgtcag cgtcaaacac gccaaagcag aagtccatac
      601 tttttattac ggtcaataca acggtcataa tgatgtagcc gacaaagaaa atgaataccg
      661 cgttgtcgaa caaaataact ataaacccca taaagcttgg aatgcgagca acttaggccg
      721 tctcgaagat tataatatgg cgcgttttaa caagtttgta actgaagttg cgccaattgc
      781 accaactgat gccggcggcg gattggatac ctacaaagat aaaaaccgtt tttcctcttt
      841 tgtcagagtt ggcgcaggca ggcaattagt ttatgaaaaa ggggcttatc atcaagaagg
      901 aaaggaaaaa ggctacgatt tgcgcgatct ttcacaagcc tatcgttatg ccattgcagg
      961 tacaccttat aaagatatta atattgacca aacaatgaat accgaaggtt tgattggctt
     1021 tggtaatcat aataaacagt attcggcaga agaacttaaa caagcactct cgcaagatgc
     1081 gttaacaaat tacggcgtat tgggcgatag cggctctccg ttatttgctt ttgacaaaca
     1141 aaaaaatcaa tgggtctttt tgggaactta tgattattgg gcaggttacg gaaaaaaatc
     1201 ttggcaagaa tggaatatct ataaaaaaga atttgcagat gaaatcaaac aacgcgataa
     1261 cgccggcacc atcaaaggtt atggcgaaca tcattggaaa accacgggca caaacagcca
     1321 tatcggttcg acagcggtaa ggcttgccgg caatgaaagg ggtgcaaaca acggacagaa
     1381 tgttaccttt gaaaacaacg gcactttggt attggatcaa aacatcaacc aaggcgcggg
     1441 cggtctgttt ttcaaaggcg attacacagt caaaggtata aataatgaca tcacttggct
     1501 aggtgcgggg attgatgttg ccgacggcaa aaaagtcgtt tggcaagtca aaaatccgaa
     1561 tggcgacaga ttggcgaaaa tcggcaaagg cacattagaa ataaacggca caggcgttaa
     1621 ccaagggcaa ttaaaagtcg gcgacggtac ggttattctg aatcaaaaag ccgattcaaa
     1681 ccaaaaagtc caggctttct cccaagtcgg cattgtcagc ggacgcggta cattggtatt
     1741 aaatagttca aatcagatta atcccgataa cctatatttc ggtttccgtg gcggtcgttt
     1801 ggatgccaat ggcaatgact tgacttttga acacatccgc aacgtggatg aaggcgcgcg
     1861 cattgtcaac cacaacacag gccacacctc cacaatcacg ctaacgggta aatctttaat
     1921 taccaatccg aacagccttt cggtacatag tatacaaaat gactatgatg aagatgatta
     1981 tagttattat taccgaccaa ggcgacccat cccacaaggc aaagatcttt attacaaaaa
     2041 ctatcgttat tacgccctaa aatccggcgg cagcgtgaac gcaccgatgc ccgaaaacgg
     2101 acaaacggaa aataacgact ggattttaat gggcagcaca caagaagaag ccaagaaaaa
     2161 cgcgatgaac cacaaaaaca atcagcgtat tagcggtttt agcggtttct ttggcgaaga
     2221 aaacggaaaa ggacataacg gtgcattaaa ccttaatttc aacggcaaaa gcgcgcaaaa
     2281 ccgtttcttg ttaacaggcg gcactaattt aaacggaaaa ataagcgtaa ctcaaggcaa
     2341 tgtcttgtta tcaggtcgtc caacaccaca cgcaagagat tttgtgaaca aatcttcagc
     2401 ccgaaaagac gcacatttct ccaaaaacaa tgaagtcgta tttgaagacg actggataaa
     2461 ccgcacattc aaagccacag aaattgcggt taatcaatcc gcatcattct cttccggcag
     2521 aaatgtatcc gacatcaccg ccaacatcac cgcaacagac aacgccaaag taaatttggg
     2581 ttacaaaaac ggcgatgagg tttgcgtgcg ctcggactat accggttacg ttacctgcaa
     2641 cacagacaac ttatccgata aggctttaaa cagctttgga gcgacacaga ttaacggcaa
     2701 tgtgaatttg agtcagaatg cggcattgac tttgggcaag gctgcattat gggggcaaat
     2761 tcaagggcaa ggaaacagcc gtgtcagcct aaatcaacat agcaaatggc atttgaccgg
     2821 cgacagccaa gtacacaatc tgtcattggc ggatagccat attcatttga acaacgcttc
     2881 cgacgcgcaa agtgcaaata aataccacac gctcaaaatc aatcatttat ccggtaacgg
     2941 gcattttcat tatctgacgc acttggcaaa aaatcttggg gataaagtgc ttgtgaagga
     3001 atccgcatcc ggtcattatc agctccatgt tcaagataaa acaggcgaac ccaatcagga
     3061 agggctgaat ctctttgatg catcatccgt acgagaccga tcgcaccttt ccgtttcctt
     3121 ggcgaataac catgtagatt taggcgcatt gcgttataca atcaaaacag aaaatggcat
     3181 tacccgattg tacaatcctt atgccgagaa ccgccgccga gtcaaaccgg ccccgtctcc
     3241 tgccacaaac acggcttctc aagcacaaac ggacagtgca caaattgcca agcctcaaaa
     3301 tatcgtcgtc gcaccgccta gcccgcaggc aaatcaagcc gaagaagcaa aacgccaaca
     3361 agcaaaagcg gagcaagtga agcgtcagca agcagaagca gagcgtaaat cggcagagtt
     3421 agcaaaacaa aaagcagaag ccgaacgcga agcaagagag ctggcgaccc gccaaaaagc
     3481 agaacaagaa cgcagcagcg ccgaacttgc acgtcgacat gaaaaagaac gcgaagcggc
     3541 agagttgtcg gcaaaacaaa aagtcgaagc cgaacgtgag gctcaagcat tggcggtacg
     3601 ccgaaaagca gaagccgaag aggcaaaacg ccaagctgca gagcttgcac gccggcatga
     3661 aaaagaacgc gaagcggcag agttgtcggc aaaacaaagg gtcggggaag aggaacgccg
     3721 tcaaacagcc caatcccagc cgcaacgccg caaacgccgt gccgcaccgc aggattatat
     3781 ggcagcttcc caagaccgtc ctaaacgccg cggacaccgt tcggtacagc aaaacaatgt
     3841 ggaaattgcc caagcccaag cagaacttgc gcgccgacag caggaagaac gcaaagcggc
     3901 agagttgttg gcaaaacaaa gggcagaagc cgaacgtgag gctcaagcat tggctgcgcg
     3961 ccgaaaagca gaagccgaag aggcaaaacg ccaagctgcc gaacttgcac atcgccagga
     4021 agcagaacgc aaagcggcag aattgtcggc aaaccaaaaa gccgcagctg aagcccaagc
     4081 attggcggca cgccaacaaa aagcccttgc gcgtcaacag gaagaagcac gaaaagctgc
     4141 agagttagcc gtcaaacaaa aagcggaaac cgaacgcaaa accgccgaac ttgccaagca
     4201 aagggcagca gccgaagcag caaaacgcca gcaagaagct cgccagaccg ccgaacttgc
     4261 acgtcgtcaa gaagcggaac gccaagcagc agagttgtcg gcaaaacaaa aagccgaaac
     4321 agatcgagaa gcggcagaat ccgcgaaacg aaaagctgag gaagaagagc accgtcaagc
     4381 agcccaatcc cagccgcaac gccgaaaacg ccgtgccgca cctcaggatt atatggcagc
     4441 ttcccaaaat cgtccgaaac gtcgcggacg cagatctact ctgccggcac cgccctcgcc
     4501 atcatttgat tcgtcagctt acgcagcacc cagggccttg cataatccgg actggtatga
     4561 aaatgactat gaagaaatcc ccttggatgc gttggaagat gaaaatgtat ctgaatcagt
     4621 tgacacatca gacaaacagc ctcaagacaa tacggaactt catgaaaaat atgaaaatga
     4681 ttatgaagaa atccccttgg atgcgttgga agatgaagat gtatccgaat cggttgacac
     4741 atcagacaaa cagcctcaag acaatacgga acttcatgaa aaagttgaga cagtgagttt
     4801 gcaaccaaga gccgctcagc cgcgagccca agccgccgcg cagccgcaag cccaagccga
     4861 tgcagtcagc accaatacca actcggcttt atctgacgca atggcaagca cgcaatctat
     4921 cttgttggat acaggtgctt cattaacacg gcacattgca caaaaatcac gtgctgatgc
     4981 cgaaaaaaac agcgtttgga tgtcgaacat cggttatggc cgtgattatg cttccgcaca
     5041 atatcgccgg tttagttcga aacgcacgca aacacaaatc ggcattgacc gcagcttgtc
     5101 cgaaaatatg cagataggcg gcgtattgac ttactctgac agtcagcata cttttgatca
     5161 ggcgagcggc aaaaatactt ttgtgcaagc caacctttat ggtaagtatt atttaaatga
     5221 tgcttggtat gtggccggcg atattggtgc aggcagcttg agaagccggt tacaaacgca
     5281 gcaaaaagca aactttaacc gaacaagcat ccaaaccggc cttactttgg gcaatacgct
     5341 gaaaatcaat caattcgaga ttgtccccag tgcgggaatc cgttacagcc gcctgtcatc
     5401 tgcagattac aaattgggta acgacagtgt taaagtaagt tctatgtcag tgaaaacact
     5461 gacggccgga ctggattttg cttatcggtt taaagtcggc aaccttaccg taaaaccctt
     5521 gttatctgca gcttactttg ccaattatgg caaaggcggc gtgaatgtgg gcggtaattc
     5581 cttcgcctat aaagcagata atcaacagca atattcagca ggtgccgcgt tactgtaccg
     5641 taatgttaca ttaaacgtaa atggcagtat tacaaaaggc aaacaattgg aaaaacaaaa
     5701 atccggacaa attaaaatac agattcgttt ctaaaatact aaattcatag caaaataaaa
     5761 tgccgtctga actcaggctt cagacggcat ttttatagtg gattaacaaa aatcaggaca
     5821 aggcgacgaa gccgcagaca gtacagatag acggcaaggc gaggcaacgc cgtactggtt
     5881 tttgttaatc cactatatca gacggacgag gttacagttt aatccctttg agcttcgcga
     5941 cggtattgat gtctttgtcg ccacgacctg agaggttgac cagaatcact tggtctttac
     6001 ccattttcgg cgcgtttttc accgcccaag caacggcgtg gctggattcg agcgcgggga
     6061 tgattccctc gaagcggcag agcaaatcaa aggcttcgag tgcttcttcg tctttggcgg
     6121 cggtgtattc gacgcgcttg atgtcgtgca gatggctgtg ttccgggccg atgccggggt
     6181 aatccaagcc tgcggaaaca gagtgcgtac ccaaaacctg accgttttcg tcctgcatca
     6241 gatagctgcg gaaaccgtgc agtacgccaa tcggtgcgcc cgaagtaatc ggcgcggcgt
     6301 gatcaggagt gttcacgccc aaaccgccgg cctccacgcc gacgaggcgc acgttttctt
     6361 cgccgatata cgggtggaac aaaccgatgg cgttcgatcc gccgcccacg caggcaacgg
     6421 caacgtcggg ctgtctgccg atggcttcca acatttgttc tttggcttca ttgccgatca
     6481 cgcattgaaa gtcgcgcacc atttcgggat acggcgcggg accggcggcg gtaccgatga
     6541 tgtagaatgt gtcatccacg cgggcgaccc attcgcgcat ggcttcgttc atcgcgtctt
     6601 tcaaagtacg gctgccgctg tcaacgccga cgacattcgc gcccaataat ttcatacgga
     6661 acacgttggg catttggcgt tggatgtcgt ccgcacccat gtacacgtcg caagtcatgc
     6721 cgaagcgggc ggcaacagtg gcactcgcca cgccgtgctg acccgcgccg gtttcggcga
     6781 tgacgcgttt tttacccata cgttttgcca acagtgcctg accgatggtg ttgttgactt
     6841 tgtgcgcgcc ggtgtggttc aagtcttcgc gcttcaacca gatttgcgca ccgcccaaat
     6901 gctcggacaa ccgcgcggcg tggtaaacgg ggctgggcct gccgacataa tgtttcaaat
     6961 cgcggtggaa ttcttcccaa aacgacgggt cgtttttcgc tgccttatag gcatccgcca
     7021 gctcttgcaa agcgggaatc agggtctcgg acacgaacag cccgccgtgt tcgccgaaaa
     7081 agcccttctc gtcgggcgcg tggtagttct tcatcggatt cttccttgtg cttcaggttt
     7141 tcaaacggca tttccgtttt ttcaaacatg ccgtccgaac gggaaattgt cggcaattat
     7201 aactgctttt cgcacaagcc cgccatttcg aaaaacgccc gatacaccgc cgcctttttc
     7261 gccaaactca aaggataggc gcgcgaagtc gaaggcaggc gcgtcagcgt caaatcccgt
     7321 ccggcaaacg gaaacggcac ggtttcgccc gttttcggca ttttaatgcc gccgccctga
     7381 atatcgagca ggatttccgt cgccttgccg cctgtcgtac aaatatggcg gcactcgggc
     7441 atctgcgcca acaccgccgc caaatcgacg gtttcaacta cctttaaaaa cttgtcggac
     7501 gcattgccgt gttcccttgc cgccttcaac acggtcgggc aggacgcaat cccccgttcg
     7561 tgcaaaaacg ccttgatttt ctcggcatca aacgcttttt cagacaacct ttggaaatgc
     7621 gccgcatcat taaaaaacac cagcccgtaa acgcgccaca tatcgttttg gaaattcgga
     7681 taatgaaact gcatcgcgcg tttgtcttcc ttgggcggaa acgtccccat catcatgacc
     7741 gcagccttcg gcggcaacac ggaatcgaag ggatgggttt cgatttcaag cagattttca
     7801 gacacgttca atcctccaac aggcaaaacg gcagacagcc ggtttttgca ccaaaccgcc
     7861 aaacacggca agccttcaaa cagcattatc acgccctgcc gttttcggtt acaatgccga
     7921 catcaaacgg atactgtaaa cacatttatg ttccaacaca caggacgaca cttaaagcac
     7981 cgccctatgt gccatcctga tttggaagga gttacgcccc tcccaaatag agtctgattc
     8041 taccgcccta aagggcgggg tttcaaccga aaaggaaaca cgatgaaaga acacaaagcc
     8101 cgcaagcgtt tcgggcagaa ttttttgcag gacacgcgga tcatcagcga tattgtcaac
     8161 gccgtgcgcc cgcaggcgga tgatgtcgtg attgaaatcg gcccgggttt ggcggcgatt
     8221 accgaacctt tggcgaaaaa gctgaaccgc ctgcacgttg tcgaaatcga ccgcgacatc
     8281 gtatgccgtc tgaaaacgct gccgtttgcg gataaactgg tgattcacga aggcgatgta
     8341 ttgcagtttg atttcaacgg catcgcaggc aaaaagaaaa tcgtcggcaa cctcccgtac
     8401 aacatttcca caccgctttt gttcaagctg gcggaggtgg cggacgatgt cgtcgatatg
     8461 cactttatgc tgcaaaaaga agtggtcgag cgtatggttg ccgcgccgaa aagcaacgac
     8521 tacgggcgtt tgggcgtgat gctgcaatat tttttcgata tggaaatgct gattgacgta
     8581 ccgcccgaat cgttcgaccc tgcgccgaaa gtggattccg cagtggtgcg catgattccg
     8641 gtgaaacacc gcatcggcaa agcggacgat ttcgagcatt tcgccaaact cgtaaaactc
     8701 gccttccacc aacgccgcaa aaccatacgc aacaatctga aagagcttgc aggcgacgat
     8761 gatttgcagg cagtcggcat caattcgcaa gaccgcgccg aacacatcgc gccggaaaaa
     8821 tacgtagcgt tgagcaatta tttggcgggc aaggccgtct gaaaagggag taagccgatg
     8881 acgaaatacc tgcttttacc cctgatactg ccgcttgcag cctgcctgac caatccgaac
     8941 gaccgttttt ttgacggcag acgctacacg cttcatcata tggagctccc gtaacgacaa
     9001 cctgcaacgg caaatgccgt ctgaaagaaa agacatgatc aaattcaaaa acgtacacaa
     9061 acatttcaaa gacctgcacg tcatcaacgg cgtgaacttg gaaatcaaaa aaggcgaagt
     9121 ggtcgtcgtc tgcggacctt cgggcagcgg caaatccaca ctcatccgca ccgtcaacca
     9181 gcttgaaagc atcgaaagcg gcgagatttg ggtggacggt gtcaacgttg ccgacccaaa
     9241 aaccgatttg aacaaaatcc gcgaagaagt cggctttgtg tttcaaagtt tcaacctcta
     9301 cccgcacctg accgtgttgg aaaacattac cctcgcaccg atgaaggtta aaggtcaaaa
     9361 tgcggaacag gcagagaaaa aagcgatgga acttttggaa cgcgtcggac tggcacacaa
     9421 aaaagacgcc ttcccttccc aactttccgg cggccagcag caacgcgtgg cgattgcacg
     9481 cggtttggcg atggaaccgc gcgtaatgtt gtttgacgaa ccgacctccg cactcgaccc
     9541 cgaaatggtc ggcgaagtgt tgaaagtgat gaaagacttg gcggaaagcg gtatgacgat
     9601 gatgtgcgta acccacgaaa tgggttttgc ccgcgaagtt gccgaccgag tgctttttgt
     9661 cgataaaggg caaatcctcg aagacgaaac gcccgaagcg ttttttacca acccgaaaca
     9721 cgaacgcgcc aaacaattcc tgcaacaggt catgacccac tgatgctatg ccgtctgaaa
     9781 accgaacgtt cagacggcat agcccgacac cgcaagatga ttgagaaaga aaaccatgta
     9841 ttttgttgac cgcaccgccg tcgtcctcaa gccgaccgtc cgctttttgg aatggctcaa
     9901 aagcaccgac gaaaatatgc ccgacctgac catagaacag cttcgtgcca actgttccgt
     9961 cttcctcgtt ccgcagttcg acgaaccgga agccgtcgtt tcctatttcg acgaacgcta
    10021 ccgccagatt ttcgaggcgg agctggcagg ttgggacatc gataaggata aatggccgca
    10081 agatatgggg ctgaaggcgt tttgggaatt tttcgacatc gaaatccacg atatggtgtt
    10141 ggacatggaa gaagcggaat tgaacattac ccccgtgttc gacaacatga tgtaaggctg
    10201 tgcgcgcctt tcagacggca ttgaggccgt cccgcatcct gaacatcctg actgtatcgc
    10261 ttcacgccgc ctcccttgcc gtctgcctga cttggtttta cggctggatg atgtggttcg
    10321 gtttggcggc tttggtggca agttacgcat actcgctcag gataacgaat ctgaaacacc
    10381 gccatgccat aaccgccatt accatagacc gcgacggaca ggcggaaatc gtatccggca
    10441 aagacaaaac agcggcaaca cttgcgggca gcagtatggt tacgccttat gccttattct
    10501 tacaatggga cacaggcggc acaaccgtca gccaatgcat catacccgac atgacggaca
    10561 aagaatccta ccggcggctg aaagtctgga tactttggcg gcagccgaaa aaaaccgccg
    10621 aaaccgatac accaagctga tttcagacgg catttgaaca cggaacactc aatgaaaaca
    10681 ctgcaagact ggctctcgca tttggaaacc gcccacagcg gcggcttgat cgatatgggc
    10741 ttggaacgcg taggcgaagt gaaaaaacgg atgaagctca cgccgcaatg ccccgtcgtc
    10801 gttgtcgcgg gaacaaacgg caaaggttcg gtctgcgcct acctgacaca gatttacaaa
    10861 caggcgggct acaaaaccgg cacactgacc agcccgcatt tattgcgtta caacgaacgc
    10921 atcgccatca acgccgaacc cgtttcggac gatacgatta ttgcctcttt cgagcgcatc
    10981 gaagcggcgc gcagcgaaat atcgctgact tattttgaat tcaatacgtt ggcggccgtc
    11041 gacatcttca tgcgcgaaca ggttgacgtg atgatattgg aagtcggctt gggcggacgc
    11101 ttggacgcgg tcaacgcatt tgacggcgat tgcgcggtgg ttactagtgt agatttggac
    11161 catcaggcgt ttttgggcga tacggtcgag caggtcagct ttgaaaaagc aggcgtgttc
    11221 cgcagcggca aacccgcaat ctgcggtcaa aaccccgcgc ccgaatcgtt gctttcacac
    11281 gccgaagcca taggcgcgaa actgctgatg gtgcagcgcg atttcgagtt tcacgcgatg
    11341 gaaaacatcc aatggaacta ccgcttccgg ccgcaacatt cagacgaccc cgcgcgcaac
    11401 cgcaatgccc tgcccttccc cgcattgcgc ggcacatacc aactttccaa cgccgcctgc
    11461 acgttgaccg tattggaatg cttgaacgac aaattgccgg tggacatcgg cgccatcaag
    11521 cgcggtttgt tgctggttga aaaccccggc cgcttccaag tcctgcccgg ccgtccgctg
    11581 accgttttgg atgtcggaca caatccccac gctgcccgcg ccctgcgccg cagcctgatt
    11641 aatttggcgt ttgcgcaaaa acgcaccgcc gtattcagta tgctgtccga caaagacata
    11701 gacggcgtgt tggaaatcgt taaagaccag tttgacgagt ggtatatcgc accgttagac
    11761 gtaccgcgcg gcatgacgct cgagagcctg caaaacaaac tgcacgaaca cagcatcgaa
    11821 aacatacaga cattcgccgc cgtccgcgaa gcataccggg cggcagcctc aaaagcgggc
    11881 gagaacgaca gaatcgtcgt tttcggctca tttcataccg ttgccgatgt catgtcggta
    11941 ctttaaaagg aaacttctat gtccgaaaac aaacaaaacg aagtcctgag cggttacgaa
    12001 caactcaaac ggcgcaaccg ccgccgcctc gtaacggcaa gttgcctggt tgccgcctcc
    12061 tgcatcctgc tggcagccgc cctcagttcc ggccctgccg aacagactgc cggcgaaaca
    12121 agcggcgtag aaaacaaagc ggcaggtgcg gcacaaaccc ctgccttgaa atccgccgcc
    12181 gacaaaccgc aggacttggc aggcgaagac aagccttctg ccgccgacag cgaaatcagc
    12241 gagcctgaaa acgtaggcgc gccgctggtg ctgattaacg accgcctcga agacagcaac
    12301 atcaaaggtt tggaagcatc cgagaaactg caacaggcag aaaccgccaa aaccgcaccg
    12361 aagcaggcaa aacaacgcgc tgccgaaaaa gtgccggcaa ctgccgacag tacggatacg
    12421 gtagcggttg aaaaaccgaa acgcactgcc gaaacaaaac cgcaaaaagc ggaacgcact
    12481 gccaaagcca agcccaaagc caaagaaacc aaaaccgccg aaaaagttgc cgacaaaccg
    12541 aaaactgccg ccgaaaaaac caaaccggat acggcaaaat ccgacagcgc ggtaaaagaa
    12601 gcgaaaaaag ccgacaaggc tgaaagcaaa aaaacagccg aaaaagaccg ttcggacggc
    12661 aaaaaacacg aaacggcaca aaaaaccgac aaagcggaca agaccaaaac cgccgaaaaa
    12721 gaaaaatccg aaaaatccgg caaaaaagcc gccattcagg caggttatgc cgaaaaagaa
    12781 cgcgccttga gcctccagcg caaaatgaag gcggcgggta tcgattcgac cattaccgaa
    12841 attatgaccg acaacggcaa agtttaccgc gtcaaatcaa gcaactataa aaacgcgaga
    12901 gatgccgagc gcgatttgaa caaattgcgc gtacacggca tcgccggtca ggtaacgaat
    12961 gaataacctc cccgttgccg acatactcat cttcgccatc atcgccgcct gcatcgtgct
    13021 atccgcgatg cgcggcgtga ttgcggaggc aggttcgatg gcggcatggg tggtttcctt
    13081 ctttttcgcc aaactctttg ccgcctcctt cgccgacctc gcctttgcct cgttccaacc
    13141 ccgcctgttt gcattggctc tgtcgttcat ttccctgttc gtcattgcct gtctgatcca
    13201 gaaaatgctc cgttcgctgc tgaccggcgc agtttcggcg gtcggtttgg gctttgccaa
    13261 ccgcattttg ggcggcgtat tcggtgcatt gaaaggcgtt ttgattatta ccctgctggt
    13321 catgcttgct tcaaaaaccg acctgcccga taccgaagaa tggcagcagt cctataccat
    13381 accgtttttc gtgtcgcttt ccgaagcagt gttaaagcat gcggacgaca gggatggagc
    13441 tttggaagac gattgattgc catacggata tttcagacgg catcctcttt tatgccgtct
    13501 gaaatgtttt ttcctttcct cagccatatc acag
//
LOCUS       DAXHPV010000041        13449 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.041, whole genome shotgun sequence.
ACCESSION   DAXHPV010000041 DAXHPV010000000
VERSION     DAXHPV010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13449)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13449)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13449
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.041"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(173..601)
                     /locus_tag="ACFM6C_000880"
     CDS             complement(173..601)
                     /locus_tag="ACFM6C_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01244 family sulfur transferase"
                     /protein_id="HFC6158362.1"
                     /translation="MAILKLDEHLYISPQLTKADAEQIAQLGIKTVICNRPDREEESQ
                     PDFAQIKQWLEQAGVTGFHHQPVTARDIQKHDVETFRQLIGQAEYPVLAYCRTGTRCS
                     LLWGFRRAAEGMPVDEIIRRAQAAGVNLENFRERLDNARV"
     gene            complement(666..2414)
                     /locus_tag="ACFM6C_000881"
     CDS             complement(666..2414)
                     /locus_tag="ACFM6C_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M61 family metallopeptidase"
                     /protein_id="HFC6158363.1"
                     /translation="MIHYKITPSPLDHEWHILLTFTQDDDLPIEISLPNWVPGSYLIR
                     DFSRHITSIHASCNGTSMPLEQIAKNRWHAAAVRGEWQIRYTVYAFDLSVRGSFLTTE
                     RGFFDGSCLFLKVEGTETLPHRLELTGIPSEWRIATTLPETGRFVFQAASYAELIDRP
                     VEMGLIEFLDFEAAGIPHTIALSGIYPDFDRNRLVSDIKKICETELAVFSSPAPFQKY
                     LFLLHVGDHIYGGLEHADSTALLADRHSLPPFGMTDADDAYTTLLGLFSHEYFHAWNV
                     KSIKPAAFAPYDLDKENYTEQLWAFEGITSYYDDLFLARSRTISPESYLNLLAQGITR
                     IQQTRGCLRQTLAESSFTAWNKFYKPDENSPNAIVSYYQKGALAALCLDLIIRNRSNG
                     RHSLDTIMDKLYREWRDTHSGIPEKHWQIRCQEITGLDLEDFFQKALYSTEDLPLAEC
                     LATAGVGLTFLPLPRQHGGGYAEHICPVPSAGDFGARFKQNTDHIVLTHVFNGGSAES
                     AALCPQDKIIALDGYACTDFAAQWARYPVGAKINIHFFRAGILRQTVLTVQATAADTA
                     ILHITDRNLLDNWLFG"
     gene            2741..4174
                     /gene="ccoN"
                     /locus_tag="ACFM6C_000882"
     CDS             2741..4174
                     /gene="ccoN"
                     /locus_tag="ACFM6C_000882"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045278 - plasma membrane respiratory
                     chain complex IV [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HFC6158364.1"
                     /translation="MDTQTYNYKVVRQFAIMTVVWGIVGMLVGVIVAAQLFAPALDLS
                     NIGPWFHFGRLRPLHTNAVIFAFGGCGLIGTSYYVVQRTCNTRLFGGWLPAFTFWGWQ
                     AVIVAAVVSFPMGWTQGKEYAELEWPIDILITLVWVAYAIVFFGTIAKRKIKHIYVAN
                     WFYGGFILAVALLHIVNNISIPAGLMKSYPVYSGAIDAMVQWWYGHNAVGFFLTAGFL
                     GMMYYFVPKQAARPVYSYRLSVVHFWALIFTYMWAGPHHLHYTALPDWTQSLGMVLSL
                     ILFAPSWGGMINGIMTLSGAWDKLRTDPILKFLIVSLSFYGMSTFEGPMMSIKTVNAL
                     SHYTDWTVAHVHAGALGWVGFVTIGSVYYMIPRLFGKEQMHSTKLVEAHFWIATIGVV
                     LYIAAMWIAGVMQGLMWSSLNDDGTLTYSFVESVKRTMPYYVIRFAGGLLYLSGMCIM
                     AYNVYRTAIGGKAVDAEIPAVSQTQHH"
     gene            4201..4812
                     /gene="ccoO"
                     /locus_tag="ACFM6C_000883"
     CDS             4201..4812
                     /gene="ccoO"
                     /locus_tag="ACFM6C_000883"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HFC6158365.1"
                     /translation="MKLQQLAEEKIGVLIVFTLLVVSVGLLIEVVPLAFTKAATQPAP
                     GVKPYNALQVAGRDIYIREGCYNCHSQMIRPFRAETERYGHYSVAGESVYDHPFQWGS
                     KRTGPDLARVGGRYSDEWHRIHLLNPRDVVPESNMPAFPWLARNKVDVDATVANMKAL
                     RKVGTPYSDEEIAKAPEALANKSELDAVVAYLQGLGLALKNVR"
     gene            4817..4987
                     /locus_tag="ACFM6C_000884"
     CDS             4817..4987
                     /locus_tag="ACFM6C_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CcoQ/FixQ family Cbb3-type cytochrome c oxidase
                     assembly chaperone"
                     /protein_id="HFC6158366.1"
                     /translation="MDINGIRALFTVWIFICFLLVLYIVFNRRNKKNYDNAANSIFDE
                     NQDAQDKKSENR"
     gene            5011..5922
                     /gene="ccoP"
                     /locus_tag="ACFM6C_000885"
                     /pseudo
     CDS             5011..5922
                     /gene="ccoP"
                     /locus_tag="ACFM6C_000885"
                     /inference="COORDINATES: protein motif:HMM:TIGR00782.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit III"
     gene            5998..6342
                     /locus_tag="ACFM6C_000886"
                     /pseudo
     CDS             5998..6342
                     /locus_tag="ACFM6C_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582195.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c5 family protein"
     gene            6544..7953
                     /locus_tag="ACFM6C_000887"
     CDS             6544..7953
                     /locus_tag="ACFM6C_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-associated TM helix domain-containing
                     protein"
                     /protein_id="HFC6158367.1"
                     /translation="MDTQIKTEADNQSNRRYLTVWRWHFYAGLLVMPFLTLLAVTGLG
                     MLLFANITGQEGERIHVVPQATVQPLSVQAEAARSAVNPETSSVVQYIAPRAEDMVAV
                     FRVNNEGKATMVAVDPYTAKVVSTMPRNQGWYHTMDEIHSDMMLDSTGDYLLETAASL
                     TIIMIISGLYLWWVKRRGIQAMLLPPKGRARSWWRNLHGAFGTWVSLILLLFCLSGIA
                     WAGIWGGKFVQAWSQFPAGKWGVEPNPVSVVPTHGEVLNDGKVKEVPWVLELTPMPVS
                     GTTVGKDGINPDEPMTLETVDRFAREIGFKGRYQLNLPKGEDGVWTLSQDSMSYDMIS
                     PFADRTVHIDQYSGKILADIRFDDYNPFGKFMAASIALHMGTLGWWSVLANVLFCLAV
                     IFIGISGCVMWWKRRPSGAVGIVPPAQKVKLPVWWMMALPLLAIALLFPTALLAIAVI
                     WLLDTLLLSRIPVLRRWFK"
     gene            8054..11263
                     /gene="recC"
                     /locus_tag="ACFM6C_000888"
     CDS             8054..11263
                     /gene="recC"
                     /locus_tag="ACFM6C_000888"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009338 - exodeoxyribonuclease V complex
                     [Evidence IEA];
                     GO_function: GO:0008854 - exodeoxyribonuclease V activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HFC6158368.1"
                     /translation="MFYLYQSNRLETLAALFAHIQKVKPLKSALQPEQIIVQSQGMRR
                     YLNTCLARDLGVAANLAFSLPASLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSE
                     AFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILG
                     LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFVFGISTMAPMYL
                     QLLHKLSEHCDVFVFALNPSGMHWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGR
                     DFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVNTGDGSIRIVS
                     AHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQAL
                     PYSVSDVKISRRQPFFYTLECLSDLLESRFEVDKVLALLETAPVLRRFGLTEDDLPLL
                     HDMVADLNVHWGLDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADV
                     NQTALFGRFAAFLETLTDIVRIWRQPATVDEWVGRCRGLLKTLFQTEADDQKAVQNLE
                     NEWVKWQAETELAQFSGQLPPHTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPF
                     KVICLLGLNDGDFPRNTKAAVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLS
                     YIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNLIEQHPLQAFSRRYFQEGG
                     RSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIGQDEFIRFWRNPVKVWLQ
                     QQLAWSEPHIGEAWEPAEPFEPQHADQIAEIYIEARREGRDFAQTAARIGAESLLPSG
                     ELGRLWQQDFQTAAKQIDTAVLNSPKLPPLPYAIPSDGQILKGSLGNLYRCGQVFYAY
                     GKPNAPQRIAFLLEHLIFCAVMPSEAETRQTFIVQSGETEILVEIAQDRALQLLSEWM
                     AFFNIGQNRPLPFFAKTSLATAEAFAQKQDWEAALKKAQTAYHGNKVSKGQKDYTEVA
                     LVFGNASQNPLEQPLFENLVRLLADTLAAAEKKEEAGEA"
     gene            complement(11333..12901)
                     /gene="mtrF"
                     /locus_tag="ACFM6C_000889"
     CDS             complement(11333..12901)
                     /gene="mtrF"
                     /locus_tag="ACFM6C_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_041421321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbgT family antimetabolite efflux transporter
                     MtrF"
                     /protein_id="HFC6158369.1"
                     /translation="MSQTDTQRDGRFLRTVEWLGNMLPHPVTLFIIFIVLLLIASAVG
                     AYFGLSVPDPRPVGAKGRADDGLIYIVSLLNADGLIKILTHTVKNFTGFAPLGTVLVS
                     LLGVGIAEKSGLISALMRLLLTKSPRKLTTFMVVFTGILSNTASELGYVVLIPLSAII
                     FHSLGRHPLAGLAAAFAGVSGGYSANLFLGTIDPLLAGITQQAAQIIHPDYVVGPEAN
                     WFFMVASTFVIALIGYFVTEKIVEPQLGPYQSDLSQEEKDIRHSNEITPLEYKGLIWA
                     GVVFVALSALLAWSIVPADGILRHPETGLVSGSPFLKSIVVFIFLLFALPGIVYGRVT
                     RSLRGEQEVVNAMAESMSTLGLYLVIIFFAAQFVAFFNWTNIGQYIAVKGATFLKEVG
                     LGGSVLFIGFILICAFINLMIGSASAQWAVTAPIFVPMLMLAGYAPEVIQAAYRIGDS
                     VTNIITPMMSYFGLIMATVIKYKKDAGVGTLISMMLPYSAFFLIAWIALFCIWVFVLG
                     LPVGPGAPTFYPAP"
     gene            13233..13445
                     /locus_tag="ACFM6C_000890"
     CDS             13233..13445
                     /locus_tag="ACFM6C_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158370.1"
                     /translation="MKNEIQKNMDKYNPWHEDDFESYEDIARDVSLTTDKTFIEHYLL
                     EVYSEENGHFDQENVHAMIEEIKNAI"
BASE COUNT         3376 a         3246 c         3560 g         3267 t
ORIGIN      
        1 tgcattttga aaatgagttt gagcataaaa ttttagtaac ctatgttatt gcaaaggtct
       61 cccactgtaa aaacggagaa ggacagagga cggcagtaag gtttgccgtc ctctttttca
      121 agttgcggtg gaatgccgct tgaaggtgtg gtttaaacgt ttcggcttgt aatcagacgc
      181 gggcgttgtc cagccgctct ctgaagtttt ccaaatttac gcctgccgct tgggcgcggc
      241 ggatgatttc gtcaaccggc ataccttctg ccgcccggcg gaagccccac aggagggagc
      301 agcgcgtacc ggtccggcaa taggcaagga cgggatattc ggcttgtccg atgagttggc
      361 ggaaggtttc gacatcgtgt ttttggatgt cgcgtgcggt aacgggttgg tgatggaatc
      421 cagtaacgcc tgcttgttcc agccactgtt tgatttgggc gaagtcgggt tgcgattctt
      481 cttcgcggtc ggggcggttg cagatgacgg ttttgatgcc cagttgcgcg atttgttccg
      541 catcggcttt ggtcagttgc ggagaaatat agaggtgttc gtcaagtttc agaatggcca
      601 ttttgtttcc tttactttgc ggttgttttt cagacggcat tttgtgtgca atgccgtctg
      661 aaagtttaac cgaacaacca gttgtccaac aggttccggt ctgtgatatg taggatggca
      721 gtatccgctg ccgttgcctg aaccgtcaag acggtttgac gcaatatgcc ggcacggaag
      781 aagtggatat tgatttttgc accgacaggg tatcgggccc attgtgcggc aaagtcggtg
      841 caggcataac cgtctaaagc aatgattttg tcttgcgggc atagtgccgc agattccgcg
      901 ctgccgccgt tgaagacatg ggtcaggacg atgtggtcgg tgttttgttt gaaacgtgcg
      961 ccaaaatcgc ctgccgacgg gacggggcag atgtgttctg cgtatccgcc gccgtgttgt
     1021 cggggaagcg gcaggaaggt cagtcccacg cctgcggttg ccaggcattc ggcaagcggc
     1081 aaatcttcgg tactgtataa cgctttttgg aaaaaatctt ccaaatccaa gccggtaatt
     1141 tcctgacagc ggatttgcca gtgtttttcc ggaatacccg agtgtgtgtc cctccactcc
     1201 cgatagagtt tgtccattat cgtatcgaga gaatgtctgc cgttgcttcg gttgcgtatt
     1261 atcagatcaa ggcacaatgc ggcaagcgcg cctttctggt agtagctgac gatggcgttg
     1321 gggctgtttt catcaggttt gtaaaatttg ttccacgcgg taaaactcga ttccgccaag
     1381 gtctgcctca aacagccgcg ggtttgttgt atgcgcgtaa tgccttgtgc cagcaggttt
     1441 aaataagatt cgggcgagat ggtgcggctg cgtgccaaaa acaaatcgtc gtaataggat
     1501 gtaatgcctt cgaatgccca tagttgttcg gtatagtttt ctttgtcgag gtcataaggg
     1561 gcgaacgcgg caggtttgat ggatttgacg ttccacgcgt gaaaatattc atgggagaaa
     1621 agtccgagca atgtggtgta ggcatcgtcg gcatcggtca taccgaacgg cggaaggctg
     1681 tggcggtcgg cgagcagggc ggtgctgtcg gcgtgttcca aaccgccgta aatatggtcg
     1741 ccgacgtgga gcaggaacaa atatttttga aacggggcag gggaggaaaa caccgccagt
     1801 tctgtttcgc agattttttt gatatccgaa accagcctgt tgcggtcgaa atcgggatag
     1861 atgccgctta aggcaattgt gtgcggaatg cctgccgcct caaaatctaa aaattcaatc
     1921 aagcccatct cgacaggtcg gtcaatcaat tcggcataag atgccgcctg aaagacaaac
     1981 ctccctgttt ccggcagcgt tgtggcaata cgccattcgg acggaatacc cgtcaattcc
     2041 aagcggtgcg gcagcgtttc cgttccttcg actttcaaaa acaggcacga tccgtcaaaa
     2101 aaaccgcgtt ctgtcgtcag gaaagaacct cgaaccgaca aatcgaatgc atatacggtg
     2161 tagcggattt gccactcgcc gcgtacggcg gcagcgtgcc agcggttttt tgcaatttgt
     2221 tcgagcggca tggacgtgcc gttacaggat gcatggatag aagtgatgtg gcgggaaaaa
     2281 tcccgaatca gatagctgcc cggaacccag tttggcaggc ttatttctat aggaagatca
     2341 tcatcttgtg tgaatgtcag caggatgtgc cactcgtggt cgagagggga cggggttatt
     2401 ttataatgaa tcataactat caaatatatc gttaaacggg atggattaaa tacctttaaa
     2461 atgcagctta acctacatca ataaagtgcc acaaaaaggg aaaattggaa acaaaagcaa
     2521 tggcggtcgg gttgtaattt attataacaa tatgatttat atgtaataaa aaacagatta
     2581 agcaaagggc tcgccggcgg cgcgaatgta attccgcttg gcgtaataag gcagatatgt
     2641 taaatttaga aaaaattacg cttgcccgga ttgcacctta aacaggctgc ggaagcggca
     2701 ggataaaaat ctttattccc ataaattcat ggagactctc atggacacac aaacttacaa
     2761 ctacaaagtg gtgcgccagt tcgccatcat gactgtagtt tgggggattg tgggtatgtt
     2821 ggtcggcgtt atcgtcgccg cccagctttt tgctcctgcc ctcgacttgt ctaatatcgg
     2881 accttggttc cacttcggcc gcctgcgtcc gctgcacacc aatgcggtta ttttcgcatt
     2941 tggcggttgc ggcctgatcg gcacatcata ctacgttgtc caacgtactt gtaatacccg
     3001 tcttttcggc ggttggctgc cggcatttac cttttggggc tggcaggcgg taatcgttgc
     3061 cgccgtcgtc agcttcccta tgggttggac ccaaggtaag gaatatgccg aactggaatg
     3121 gccgatcgat attctgatta ctttggtttg ggtggcttac gccatcgtat tcttcggtac
     3181 gattgccaaa cgtaagatta aacatattta cgttgccaac tggttctacg gcggctttat
     3241 tttggcggtc gcacttttac acatcgtcaa caatatcagc atcccggcag ggttgatgaa
     3301 gtcatacccc gtctattccg gtgcgattga tgctatggtt caatggtggt acgggcataa
     3361 cgccgtgggc ttcttcctga ctgccggctt cttgggtatg atgtactatt tcgtacccaa
     3421 acaagcagcc cgccccgttt actcctaccg cctgtccgtc gttcacttct gggcgttgat
     3481 tttcacctat atgtgggcgg gtccgcacca tcttcactac actgcgctgc ctgactggac
     3541 gcaatctttg ggtatggttc tgtctttgat tctgttcgca ccctcttggg gcggtatgat
     3601 taacggcatc atgaccttgt ccggcgcgtg ggacaaactg cgtacagacc cgattcttaa
     3661 attcctgatt gtatccttgt ccttctacgg tatgtctacc tttgaaggcc cgatgatgtc
     3721 gattaaaacg gtcaatgcat tgagccacta tacggactgg accgtcgcgc acgttcatgc
     3781 gggtgcgttg ggctgggtag gctttgtaac catcggttcc gtctattaca tgattccccg
     3841 tctgttcggc aaagaacaga tgcacagcac caagctggta gaagcacatt tttggattgc
     3901 gaccatcggc gtggttctgt atatcgctgc catgtggatt gccggtgtga tgcagggttt
     3961 gatgtggagt tctttgaacg atgacggtac gctgacctac tcgtttgtcg aatccgtaaa
     4021 acgcaccatg ccttactacg tgatccgttt tgcaggtggt ttattgtatc tgagtggtat
     4081 gtgcattatg gcgtacaacg tgtaccgcac agccatcggt ggtaaagcag tcgatgccga
     4141 aatccctgcg gtttcccaaa cacagcacca ctaaaatact aagaaagata ggctaccaaa
     4201 atgaaattac aacaattggc tgaagaaaaa atcggcgttc tgattgtgtt cacgctgctt
     4261 gtagtcagtg tcggtctgtt gattgaagtt gtgcccttgg cctttaccaa ggcggcaaca
     4321 cagccggcgc cgggcgtgaa gccttacaat gccctgcagg ttgccggacg cgatatttac
     4381 atccgtgagg gctgttacaa ctgccactcg caaatgattc gtccgttccg tgcggaaacc
     4441 gagcgttacg gtcattactc tgttgccgga gagtcggttt acgaccatcc gttccaatgg
     4501 ggttccaaac gtaccggtcc tgatttggca cgtgtgggcg gccgctattc cgacgaatgg
     4561 caccgtatcc acctgctgaa tccccgtgat gtcgtgcctg agtccaatat gccggcattc
     4621 ccgtggcttg cacgcaataa agtcgatgtc gatgcaaccg ttgccaacat gaaggctttg
     4681 cgtaaagtag gtactcctta cagtgatgag gaaattgcga aagcgcctga ggctttggca
     4741 aacaaatccg agctggatgc tgtagtcgcc tatctgcaag gattgggtct ggctttgaaa
     4801 aacgtaaggt aacatcatgg atattaacgg tattcgtgct ctcttcacgg tatggatctt
     4861 tatctgtttc ctgttggtac tctatatcgt cttcaacagg cggaataaga aaaactatga
     4921 taatgccgca aacagcattt ttgatgaaaa ccaagatgcg caagataaga aaagcgaaaa
     4981 ccgttaatat tgtgataacg gagcaaaaca atgaacacaa catcccaatt taccagtaat
     5041 ttctggaata tatatattgc agttattgtc ttactgagct ttatcgcttt ggcttggctg
     5101 ctgctgtctc aaaatgttgt caaacgtccg aagaagggcg aagaagtaca aactacgggt
     5161 catgagtggg acggcattgc cgaatacgac aatccgctgc cccgctggtg gttttggctg
     5221 tgtgttttga cgtggctgtt cggtatcggt tatttggtta tgtatccggg tgtcggcgac
     5281 tacaaaggtc tgctgaaatg gaccagccat aaccaatatg aaaaagaggt caaaaaagcc
     5341 gatgagcaat acggcaaact gtatgccaag tttgcggata tgccgattga aaaagtggca
     5401 aaagaccctc aagccaagca aatcgcccaa aacctgttta acacttattg tatccagtgc
     5461 cacggctctg atgctaaagg ctctaaaggt tttccgaatc tgaccgatag cgattggttg
     5521 tggggcggtg atcccgataa aatccacgag accatcgaaa aaggccgtgt tgcgactatg
     5581 cctgcctggg gccctgcttt gggcgaagaa ggcgtgaaag acgttgccca ttatgtgatg
     5641 tccctttcaa aacccgaagg tcagtatgat gaggaacgtg ccgcgcgcgg acaagccttg
     5701 ttcagcggtc cgcctgccaa ctgtttcact tgccacggcg ataagggaca aggtatccaa
     5761 ggtttgggtc cgaacctgac tgatgacgtg tggttgtggg gcggtacgca aaaatccatt
     5821 atcgaaacca ttaccaacgg tcgcagcagc caaatgcccg cttggggaca tttcttggat
     5881 aaagacaaac tgcatattat gactgcttat gtatggggtc tttccgataa agacggtaaa
     5941 gctccggtga aaaaagccga gcctgcaccg actcccgcac cggcggcaga acccgcagcc
     6001 tctgctcctg cagaagcagc acaagccgcg tccgaagcca aacctgccgc agcagaacct
     6061 aaagccgagg aaaaagctgc acctgctgcc aaagcggacg gcaaataggt ttatgaaacc
     6121 gtttgtgccg cctgccatgg caatgcgatt ccgggtattc cccatgtagg catcaaagcc
     6181 gattgggccg accgcatcaa aaaaggcaag gacacgttgc acaaacacgc gatcgaaggt
     6241 ttcaatacga tgcccgcaaa aggcggtcgc ggcgatttga gcgatgatga ggttaaagct
     6301 gcggttgact atatggtcaa ccagtcaggc ggcaaattct aacttgactg agtttccgat
     6361 attatcggtt atgaaaatcc agattcagta ttgaatctgg attttttgtt ttaacgggca
     6421 tccggtttta aacgcagact gcctatttgt tgtaatgaat tttgacttta gtcataaaga
     6481 attagtcttt attgtttata atcgcgcatc atcacgatag ccctattttc aaaaggacga
     6541 tttatggata cacaaatcaa gactgaagcc gacaatcaga gcaaccggcg ttatctgacc
     6601 gtttggcggt ggcattttta tgccggtctg ctggttatgc cttttcttac cctgcttgcc
     6661 gttacgggtt tgggtatgct gctgtttgcc aatattaccg gtcaggaggg cgagcggatt
     6721 catgttgtgc cgcaggcaac ggtacaacct ctgtctgttc aggcggaagc ggcacgcagt
     6781 gccgttaatc cggaaacttc gtccgtcgtt cagtatattg cgccgcgcgc cgaggacatg
     6841 gttgccgtgt tccgtgtcaa caatgagggt aaggcaacga tggtcgcggt cgatccttat
     6901 acggcaaaag tagtcagcac tatgccgcgc aatcagggtt ggtatcacac gatggatgaa
     6961 atccacagcg atatgatgct cgattcgaca ggcgattatc ttttggaaac ggctgcatcg
     7021 ctgacgatta tcatgataat cagcggtttg tatctttggt gggtgaaacg gcgcggcatc
     7081 caggcgatgc tgctgccgcc aaaaggcagg gcgcgttctt ggtggcggaa tctgcacggc
     7141 gcgtttggaa cttgggtgtc gttgatttta ctgttgttct gcctgtcggg tattgcttgg
     7201 gcaggtattt ggggcggcaa gttcgtgcag gcttggagtc agttcccggc aggcaaatgg
     7261 ggtgtcgaac cgaaccctgt ttcagtcgtg ccgacccacg gcgaggtatt gaatgacggc
     7321 aaggttaagg aagtgccgtg ggttttggag cttacgccta tgcctgtttc agggacgact
     7381 gtgggcaaag acggtattaa ccctgacgag ccgatgacat tggaaaccgt cgaccgtttt
     7441 gcgcgggaaa tcggtttcaa agggcgttat cagctgaatt tgcccaaagg cgaggacggc
     7501 gtatggactt tgtcgcagga ttctatgagt tacgacatga tcagcccgtt tgctgaccgc
     7561 acggtgcata tcgaccagta cagcggcaag attcttgccg acatccgttt tgatgattac
     7621 aacccgttcg gcaaatttat ggcggcgagc attgcgctgc atatggggac tttgggctgg
     7681 tggagcgtgt tggcgaacgt tttgttctgc cttgccgtca tttttatcgg tatcagcggt
     7741 tgcgtgatgt ggtggaaacg ccgtccgtcc ggcgcggtgg gcatcgttcc gccggcgcag
     7801 aaagtcaagc tgccggtttg gtggatgatg gcattgccgc tattggcaat cgcactgctc
     7861 ttcccgaccg cactgcttgc cattgccgtg atttggctgt tggatacctt gctgctgtcg
     7921 cggattcctg ttttgaggag atggtttaaa tgacccgatg ccgtctgaaa ggttcagacg
     7981 gcattttgtt tgaaggcagg cgggggaaag gctatataat cccgaatact tttccgcaac
     8041 ttttgtcgaa atcatgtttt atctgtatca atccaaccgt cttgaaacgc tggcggcact
     8101 gtttgcccac attcaaaaag tcaaaccgct gaaatcggct ttacagcccg aacagattat
     8161 tgtgcagagt caggggatgc gccgctacct caacacctgc ctcgcccgcg atttgggcgt
     8221 ggcggcgaat ttggcgttca gcctgcccgc cagcctgacg tggaagctga tgaaaaaact
     8281 gattcccggc attccggaac tcagcccgtt tgcacccgaa gtcatgcgct ggcggctgct
     8341 ggatttgttc cgcagcgaag cattccggaa tacggcagaa tttgaagatg tgaggaatgt
     8401 gctgcaagac tatctaggca gcggcgaatc ggcagattac cagcttgcgg gacagcttgc
     8461 ggacatattc gaccaatacc ttgtctatcg tccgcagtgg atagacgcgt ggcagcaggg
     8521 caggatactc ggtttgggcg acgatgagat ctggcagtcc aaactgtggc gttacctcga
     8581 cgacggcagg cagagcgcgc cgcaccgtgt cgcgttgtgg gaaaaactgc ttgccgcgtt
     8641 ggacaaggat aagctgcccg agcgttattt cgtgttcggc atttccacga tggcgccgat
     8701 gtatcttcag cttttgcaca agctgtccga acattgcgat gtgttcgtgt tcgcactcaa
     8761 tccgagcggg atgcattggg gcaatgtcat cgaggcggcg caaatcctca aaggtggcgg
     8821 cgatcccgat ttaactcagg cagggcatcc gctgctcgct tcattgggca agcaggggcg
     8881 ggactttttc gactttttga acgaaatgga aatagaaggc gaaacgccgg tatttgaaga
     8941 aggcggacgc gatacgcttt tgcacgccct gcaaaccgat attcaaaacc tgaaaatgcc
     9001 gtctgaaaat gtgggaagcg tcaacacggg cgacggctcg atacgcatcg tctccgcaca
     9061 cagccccttg cgcgaattgc agatactcaa agacaagctg ttgaaaattc tgcatgaaca
     9121 tcccgattgg cagccgcatg atatcgccgt attaaccccg aacatcgaat cctatacgcc
     9181 ttttatcgaa gccgtgttcg gacaggcgca gcccggtgcg caggcattgc cgtattccgt
     9241 ttcagacgtg aaaatcagcc gccgacaacc gtttttttat acattggaat gcctgtccga
     9301 cttgttggaa agccgatttg aagtcgataa agtgctcgcg cttttggaaa ccgcgcccgt
     9361 attgcgccgt ttcggactga ctgaggacga tttgccgctt ttgcacgata tggttgccga
     9421 tttgaacgtt cactggggtt tggacggaga aatgcgcggc ggcacggatc agctgttcac
     9481 ctggaagcag gcggtagaac gcatgatatt gggctggatg ctgcccgaag gcggcaaccc
     9541 gatgtggcag gatgtcagcg cgtggtatgc cgacgtgaac caaaccgccc tgttcggacg
     9601 ttttgccgcc ttcctcgaaa ccctgacgga tattgtacgg atatggcggc agcccgcaac
     9661 ggttgatgaa tgggtaggac gttgccgagg tttgcttaaa acattgttcc aaaccgaagc
     9721 cgatgaccaa aaggcagtcc aaaacctcga aaacgaatgg gtcaaatggc aggcggaaac
     9781 cgaattggcg caattttccg gacagttgcc gccgcacacc gtcatccgcc acatccgccg
     9841 ctttctcgac agcgaaagcg aggcaggctt tttacgcggc ggcatcacct tttgcagtat
     9901 ggtgccgatg cggagcctgc cctttaaagt catctgtctg ttgggtttga acgacggaga
     9961 ttttccccgc aataccaaag ccgccgtatt cgacctgatt gccaaacatc ccgccaaagg
    10021 cgaccgcgcc cgccgcgacg acgaccgcta cctcttcctc gaagccctca tcagcgcgcg
    10081 tgaaatcctg tacctgtcct acatcgggcg cgacatccgc aaagacgaag aactggctcc
    10141 gtcttctttg ttgggcgaac tcatcgatac cgttgccgct atggcgggca tcggtagccg
    10201 ccaacttgca caaaacctga tagaacagca tccgctgcaa gccttctcgc gccgatattt
    10261 tcaagaaggc ggacgttcag acggcatatt cggcacgcgt accgactacg ccgccgcgct
    10321 cggacaaacg cccgaaccgc cgcaaccctt tttcgatcaa cccgtagaaa acgccgaacc
    10381 tgttgccgaa atcggacagg acgaatttat ccgcttctgg cgcaaccctg tcaaagtatg
    10441 gcttcagcag cagcttgcgt ggagcgaacc ccatatcggc gaagcctggg agcctgccga
    10501 acccttcgag ccgcaacacg ccgatcaaat cgccgaaatc tacatcgaag cacggcgcga
    10561 aggacgggat tttgcccaaa ccgccgcccg catcggggcg gaaagcctcc tgccgtcggg
    10621 agagttgggc agactttggc agcaggactt ccaaaccgct gccaaacaaa tcgacacggc
    10681 ggttttaaac agtcccaaac ttcctccgct gccctacgcc ataccgtcgg acgggcaaat
    10741 cctgaaaggc agcttgggca atctgtaccg ctgcggacaa gtgttttacg cctacggcaa
    10801 acccaacgcg ccgcaacgta tcgctttttt gttggaacac ctgatatttt gcgccgttat
    10861 gccgtctgaa gccgaaacgc ggcaaacctt tatcgtccaa tccggagaaa ccgaaatatt
    10921 ggtggaaatc gcgcaagaca gggcattgca gctattgtcg gaatggatgg cgtttttcaa
    10981 tatcgggcaa aaccgcccgc tgccgttttt tgccaaaacc tcgcttgcca ccgccgaagc
    11041 gtttgcccaa aaacaagatt gggaagccgc cctgaaaaaa gcccaaaccg cctaccacgg
    11101 caacaaagtc agcaaagggc agaaagacta taccgaagtc gccctcgtgt tcggcaacgc
    11161 aagccaaaac ccgctcgaac agcccctgtt tgaaaacctc gtccgtctgc ttgccgacac
    11221 gcttgccgca gcggaaaaaa aggaagaggc cggagaagcc tgacgggatg gaaaggcaaa
    11281 taccgtctga aaacagcaaa aaggttttca gacggcattt tgtttatcgt gtttaaggtg
    11341 cgggatagaa tgtgggcgcg ccgggaccga cgggcaggcc caaaacaaat acccaaatgc
    11401 agaataaggc aatccacgca atcaagaaga aagcggaata cggcaacatc atagaaatca
    11461 gcgtacccac gcccgcatct tttttgtatt tgatcaccgt cgccataatc agcccgaaat
    11521 aactcatcat cggcgtaata atattggtaa cggaatcacc gatgcggtaa gcggcttgaa
    11581 tgacttcggg cgcgtagccg gccaacatca gcatagggac gaaaatcggc gcagttaccg
    11641 cccattgcgc ggaggcggag cctatcatca gattgataaa agcacaaatt aaaataaaac
    11701 cgataaacaa cacgctgccg cccaagccga cttcttttaa gaacgtcgcc cctttaacgg
    11761 caatatattg cccaatattc gtccaattaa aaaatgcgac aaactgtgcg gcaaaaaaga
    11821 tgatgaccaa ataaagcccc agagtactca tcgattcggc catcgcatta acgacttcct
    11881 gttcgccgcg caaacttcgg gttacccggc cataaacaat gcccggcagt gcaaacaaca
    11941 agaaaataaa aacaacaatc gattttaaaa acggcgaacc ggaaaccaat cctgtttcag
    12001 gatgacgcaa aataccgtcg gcagggacga tgctccaagc caatagggcg gataaggcaa
    12061 caaacaccac gccagcccaa attaatcctt tatattccaa aggcgtgatt tcattggaat
    12121 gccgaatgtc tttttcttct tgtgacaaat ctgattgata agggcccaat tgcggttcga
    12181 cgattttttc agtaacaaaa taaccaatca aagcaatcac aaacgtactg gctaccataa
    12241 aaaaccagtt ggcttcaggg cctacgacgt agtcgggatg gatgatttgc gccgcctgtt
    12301 gggtgatgcc tgccaagagc ggatcgattg tgcctaagaa cagattggcc gaataaccgc
    12361 ccgaaacgcc ggcgaaagcc gcagccagac cggcaagcgg atggcggccg agggaatgaa
    12421 agatgatggc ggacaaaggg attaggacga catagcccaa ttcagaagcg gtattagata
    12481 aaatccctgt aaaaacaacc ataaaagtag tgagtttgcg tggcgatttt gtgagcaata
    12541 agcgcattaa tgcggaaatc aagcccgatt tttccgcaat ccccacgccc aataaagaaa
    12601 ccaacaccgt tcccaacggc gcgaaaccgg tgaaattttt aacggtatgc gtcaggattt
    12661 tgatcaaacc gtcggcattg agcaggctga caatgtaaat caaaccgtca tcggcacgtc
    12721 ctttcgcacc aacagggcgc ggatcgggga cggatagtcc gaaatacgca ccgacggcag
    12781 aggcaatcag caataacaca atgaaaataa taaaaagcgt aaccggatgc ggcaacatat
    12841 tgcccagcca ttcgactgtg cgtaaaaatc gtccgtcccg ttgcgtatcg gtttgactca
    12901 tctgcttctc cttaaaaaaa tatattgagt gcattaaatt tttgaatgta acatgaagtg
    12961 ttttgtaagc aaactaaaat aatcgcatat gtatataacc gcaatagatt aaaacagaaa
    13021 atgcccacat cgttattctc ataaaggcgg taatccgaaa acttgacgtt aaagccttat
    13081 caggaatgac tggaactcaa aaaacggttt cccgttttcg cggaaatggc gggattttca
    13141 gtttttattt gcaaaaatgc tggagaaaaa tgcagtttac attttgaatg gtattgttat
    13201 taattgtaaa taaatattgg aaggtaaatg atatgaaaaa tgaaattcaa aaaaatatgg
    13261 acaaatataa tccctggcat gaagatgatt ttgagtcgta tgaagacatt gccagagatg
    13321 tatcgctgac gacagataaa acgttcattg aacattattt gttagaagtt tattcagaag
    13381 aaaacggaca ttttgaccaa gagaatgtcc atgcaatgat agaagaaatt aaaaatgcaa
    13441 tttagtgaa
//
LOCUS       DAXHPV010000042        13432 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.042, whole genome shotgun sequence.
ACCESSION   DAXHPV010000042 DAXHPV010000000
VERSION     DAXHPV010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13432
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.042"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(91..426)
                     /locus_tag="ACFM6C_000891"
     CDS             complement(91..426)
                     /locus_tag="ACFM6C_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HFC6158371.1"
                     /translation="MFGKAGLGGLMKQAQQMQENMKKAQAKLAETEIEGEAGNGLVKI
                     TMTCAHEVRKIDISPDLIQEAADDKEMLEDLILAALKSARGKAEETANKTMGAFTQGL
                     PPGVGDFFR"
     gene            complement(506..2635)
                     /gene="dnaX"
                     /locus_tag="ACFM6C_000892"
     CDS             complement(506..2635)
                     /gene="dnaX"
                     /locus_tag="ACFM6C_000892"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HFC6158372.1"
                     /translation="MDYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLT
                     GTRGVGKTTIARILAKSLNCENAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGID
                     NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH
                     KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYAPPALQLLGRAAAGSMRDAL
                     SLLDQAIAMGSGSVAEQDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAV
                     GFDNALGELAILLQHLALIQAVPNALAHDDPDSDILHRLAQTIGGEQIQLYYQIAVHG
                     KRDLSLATDEYAGFMMTLLRMLAFAPLAAASCDANAVIENTELQSPSAQTAEKETSAK
                     KPQPRPEAETAQTSVQTASAAAMPSESKTAEPVTNQENNDVPPWEDAPDEAQTAACTA
                     QASAKSIQTASEAETPPENQVSKNKAADNVTDAPLSEVPSENPIQATPNDEAVETETF
                     AHEAPAEPFYGYGFPDNDCPVEDGAEIPPPDWEHAAPADTAGGGADEEAEAGGIGGNN
                     TPSAPPPEFSTENWAAIVRHFARKLGAAQMPAQHSAWTEYHPDTGLMVLAMTDEARAT
                     ADKKRLDKIRDTLAQAYGLQLTLQTQDWHDEAGRETPAMQDKRVQAEDRQKAQALLEA
                     DPAAQKILQAFGAQWQPESLELAANRP"
     misc_feature    complement(1407..1446)
                     /gene="dnaX"
                     /locus_tag="ACFM6C_000892"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01843"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="This ribosomal frameshift element is known only in
                     the genus Neisseria; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01843"
     gene            complement(2730..4706)
                     /gene="mutL"
                     /locus_tag="ACFM6C_000893"
     CDS             complement(2730..4706)
                     /gene="mutL"
                     /locus_tag="ACFM6C_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0032300 - mismatch repair complex
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HFC6158373.1"
                     /translation="MPRIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAID
                     VELDGGGIRLIRVSDNGSGIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLAS
                     IASVSRLTLTSRQEDSSHATQVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKF
                     LKSEATEYAHCATMLERLALAHPHIAFSLKRDGKQVFKLPAQSLHERIAAIVGDDFQT
                     ASLEIDSGNGALRLYGAIAKPTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLH
                     NALTPAFVLFLDLPPEAVDVNVHPTKTEIRFRDSRQVHQLVFHTLNKALADTRADLTE
                     SVSNAGEVLHDITGVTPAPMPSENDSENLFDSASDYPTGNKPDTRNAFGSSGKTAPMP
                     YQAARAPQQHSLSLRESRAAMNTYAELYKKTDDIDLELSRLEQARFGNMPSETPAPQT
                     DTPLSDGIPSQSELPPLGFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQR
                     QKNGKLQSQRLLIPVTFATSHEECAALSDHADALAGFGLELSDMGGNTLAVRAVPAML
                     GKADVVSLAKDVLSELAQVGSSQTIEEHENHILATMSCHGSVRAGRRLTLPEMNALLR
                     DMENTPRSNQCNHGRPTWVKLTLKELDALFLRGQ"
     gene            4849..5034
                     /locus_tag="ACFM6C_000894"
     CDS             4849..5034
                     /locus_tag="ACFM6C_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3460 family protein"
                     /protein_id="HFC6158374.1"
                     /translation="MYHYQSEATQFLNRLIEEKPELEQQRLENRGLLWDVELNPEEQE
                     NFEAAKVAKKPYTYYQD"
     gene            5045..5713
                     /locus_tag="ACFM6C_000895"
     CDS             5045..5713
                     /locus_tag="ACFM6C_000895"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6158375.1"
                     /translation="MTTHLSNVAPDLQNYLNAIGEPEHPVLTRLREKTGHHRMGKMAI
                     AREQAAVLVWLAKLIRAEKYLEVGVFTGYSSTALALALPKHGRITACDINVTFTDTAR
                     QVWNEAGVAHKISLHLQPALLTLDDLIAQGEAGSYDLALIDADKPPTPQYFERCLKLV
                     RQGGIIAIDNILLNGRVMREAASDAPPSVGILKDFNQNLPNDPRIVPITLPVGDGLTL
                     LLKK"
     gene            5713..6429
                     /locus_tag="ACFM6C_000896"
     CDS             5713..6429
                     /locus_tag="ACFM6C_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system YbgF family protein"
                     /protein_id="HFC6158376.1"
                     /translation="MKTKLPLFIIWLSVSAACSSPVSRNIQDMRPEPQAEAGSSDAIP
                     YPVPTLQDRLDYLEGKIVRLSNEVETLNGKVKALEHAKTHPSGRTYVQKLDDRKLKEH
                     YLNTEGGSASAHTVETAQNLYNQALKHYKSGRFSAAAALLKGADGGDGGSIAQRSMYL
                     LLQSRARMGNCESVIEIGGRYANRFKDSPTAPEAIFKIGECQYRLQQKDIARATWRSL
                     IQAYPGSPAAKRAASAIRKR"
     gene            6477..6962
                     /gene="purE"
                     /locus_tag="ACFM6C_000897"
     CDS             6477..6962
                     /gene="purE"
                     /locus_tag="ACFM6C_000897"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HFC6158377.1"
                     /translation="MIQIGIIMGSNSDWPVMRQAAQFLEEFGVEYEARVVSAHRTPDL
                     MFQYAETARERGIKAIIAGAGGAAHLPGMVAAKTTVPVLGVPVPSKYLRGEDSLLSIV
                     QMPKGVPVATFAIGEAGAANAALFAVSMLANENPELAQKLADFRAKQEQAVLSMELEQ
                     I"
     gene            complement(7145..8599)
                     /locus_tag="ACFM6C_000898"
     CDS             complement(7145..8599)
                     /locus_tag="ACFM6C_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0019516 - lactate oxidation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LutB/LldF family L-lactate oxidation iron-sulfur
                     protein"
                     /protein_id="HFC6158378.1"
                     /translation="MTTQTIKFHMKPETFKQNAAISLQDKPLRKSLRTAMDMLMTKRK
                     AVLTDEEELQSLRDLCEHIRQRSLSKLPALLEQLEENLTKLGVKVHWAETPAEACQII
                     HDIITAKNGKLMVKGKSMVSEEIELNHYLEAKGIKAVESDLGEFIVQMAGEKPTHIVM
                     PAIHKTKEQVSELFHQNLGTPLTDDVDQLTGFARKALRDIYSTADVGLSGVNFAVAET
                     GTLCLVENEGNGRLSTTVPPVHIAITGIEKVVAKLSDIPPLYSLLPRSAIGQNITTYF
                     NMITGPRRSEELDGPQEMHLVLLDNGRSQAYAEDQMRRTLQCIRCGACMNHCPVYTRI
                     GGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVEVCPVRIPITEQMQRLR
                     VEAQRSPTETVPHPIRGQGASHTFGEQMAWRTFNGIFSGSKTYRAFGWAATKFRNLTP
                     RKQLGWTQNRVPMKPAKKTLHELMAEKMRQKEQA"
     gene            complement(8596..9297)
                     /locus_tag="ACFM6C_000899"
     CDS             complement(8596..9297)
                     /locus_tag="ACFM6C_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HFC6158379.1"
                     /translation="MSARENILAKLKKADALPMEEPAVFDYYREKGVSWDSEAERLKH
                     WAAAMRAVKTEIYWVTKSNWMQVFREAAEGKGLKNILLPLATEHGQIARAALAGSNIE
                     PIVFEREIDTWKTEFFTNIDAGFSGAQCGIARTGTLMLFSSPEEPRTLSLVPPVHFCL
                     FDTSKMYNEFHNAVEGEKLVENGMPTNVFLISGPSKTADIQLTLAYGAHGPRDLVILA
                     ILPDHISPADLEENA"
     gene            complement(9294..10073)
                     /locus_tag="ACFM6C_000900"
     CDS             complement(9294..10073)
                     /locus_tag="ACFM6C_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HFC6158380.1"
                     /translation="MSATIPPKIIRYDSNPTDVYFFGTCVLDLFMPEAGMDAITLIEQ
                     QGIRVHFPMAQSCCGQPAYSSGHPTEAFDVAKAQLDLFPENWPIVVPSGSCGGMMKHH
                     WPTLFKGSEYEERAVDCAGRIIEFTHFLLAIGFKPEDKGEPLKVAVHTSCAARREMNV
                     HLSGWQLIDGMENVERIVHDHESECCGFGGTFSVKQADISGAMVTDKVAALKETGATE
                     IISADCGCMMNIGGKIAKDEPDMPRPKHIASFLLERTGGKA"
     gene            10358..11764
                     /locus_tag="ACFM6C_000901"
     CDS             10358..11764
                     /locus_tag="ACFM6C_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFC6158381.1"
                     /translation="MEKNTLSARAPSPWLPLLLAIAIFMQMLDATILNTALPEIAADL
                     NESPLDMQLAVISYTLTVALLIPLSGYLADRFGTKKVFFGSIAVFMLGSALCAASGSL
                     FELTLSRVVQGIGGSMLVPIPRLTILRVYDKSKLLNAINYAVMPALIGPVLGPLAGGY
                     LVEYASWHWIFLLNLPIGLLGFILGRNIMPDIKGSNISLDFKGYLIFSAAACLLLLSA
                     ESLSHALPPYFALLPLCGGLLFAHRYFRHMKTASKPIYSADLFLIRTFRLGLAGNLFS
                     RLGISSIPFLMPLMFQVAFGFGASLSGWLVAPVALSSLLVKPLIAPLMKRFGYRTVLL
                     WNTKLLAAFIMLLALPDGNSPLWIWIFLSLAIGACNSLQFSAMNTLTLADLRPQQTGS
                     GNSLMAVNQQLAISMGIVAGALILKNWTFLIPASSGLHSAFRMTLLSIGGITLASSLV
                     FKRLHVSDGANLTRNTPS"
     gene            11876..13402
                     /locus_tag="ACFM6C_000902"
     CDS             11876..13402
                     /locus_tag="ACFM6C_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003765285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="HFC6158382.1"
                     /translation="MKTRSLISLLCLLLCSCSSWLPPLEERTESRHFNTSKPVRLDNI
                     LQIRHTPHTNGLSDIYLLNDPHEAFAARAALIESAEHSLDLQYYIWRNDISGRLLFNL
                     MYLAAERGVRVRLLLDDNNTRGLDDLLLALDSHPNIEVRLFNPFVLRKWRALGYLTDF
                     PRLNRRMHNKSFTADNRATILGGRNIGDEYFKVGEDTVFADLDILATGSVVGEVSHDF
                     DRYWASHSAHNATRIIRSGNIGKGLQALGYNDETSRHALLRYRETVEQSPLYQKIQTG
                     RIDWQSVQTRLISDDPAKGLDRDRRKPPIAVRLQDALKQPEKSVYLVSPYFVPTKSGT
                     DALAKLVQDGIDVTVLTNSLQATDVAAVHSGYVKYRKPLLKAGIKLYELQPNHAVPAT
                     KDKGLTGSSVTSLHAKTFIVDGKRIFIGSFNLDPRSARLNTEMGVVIESPKIAEQMER
                     TLADTTPEYAYRVTLDRHNRLQWHDPATRKTYPNEPEAKLWKRIAAKILSLLPIESLL
                     "
BASE COUNT         2703 a         3629 c         3795 g         3305 t
ORIGIN      
        1 agacccgtcg gcacggaaat ttatcgagta aaacggtttc ttagattcta cgttctagat
       61 tcccgcctgc gtgggaatga cggtcgggta tcagcggaag aagtcgccca ctccgggggg
      121 tagaccttgc gtgaatgcgc ccattgtttt gtttgcggtt tcttcggctt tgcctcgggc
      181 ggatttgagg gcggcgagga tgaggtcttc gagcatttct ttgtcgtcgg cggcttcttg
      241 aatcaaatcg gggctgatgt cgattttgcg tacttcgtgc gcgcaggtca ttgtgatttt
      301 gaccaggccg ttgcctgctt cgccttcgat ttcggtttcg gcaagtttgg cttgcgcttt
      361 tttcatattt tcctgcattt gctgcgcctg tttcatcagg ccgcctaatc cggcttttcc
      421 gaacataggt aaaactcctg tctgtgtttg aatgaatggg gaaacggcaa tgccgtccga
      481 aaggtttggg cggcattata tctgtttatg gccggtttgc cgctaattcc agtgattcgg
      541 gctgccattg cgcgccgaat gcttggagga ttttttgtgc ggcggggtcg gcttcgagca
      601 atgcttgtgc tttttgcctg tcttcggctt ggacgcgctt gtcctgcatc gcgggggttt
      661 ctctgccggc ttcgtcgtgc cagtcttggg tttgcagggt gagttgcagc ccgtaggctt
      721 gggcaagggt gtcgcggatt ttgtcgagac gttttttgtc ggcggtggcg cgtgcttcgt
      781 cggtcattgc caaaaccatc aggccggtgt cgggatggta ttccgtccac gcggaatgtt
      841 gcgccggcat ttgcgccgcg ccgagtttgc gggcgaaatg ccggacgatg gctgcccagt
      901 tttcggtgga aaattcgggc ggcggggcgg acggcgtgtt gtttccgccg atgccgcctg
      961 cttctgcttc ttcgtccgcg cctccgcctg cggtatcggc aggggcggcg tgttcccaat
     1021 cgggcggcgg gatttctgcg ccgtcttcta cggggcagtc attatccgga aagccgtaac
     1081 cgtagaaagg ttctgcaggg gcttcgtgtg caaatgtttc cgtttcaacg gcttcatcat
     1141 tcggtgttgc ctgaatgggg ttttcagacg gcacttcgga caagggggca tcggttacgt
     1201 tgtcggctgc cttgttcttg gaaacttggt tttcgggcgg cgtttcggct tcggatgccg
     1261 tctgaatgct ttttgccgat gcttgcgccg tgcaggctgc ggtttgggct tcgtccggcg
     1321 cgtcttccca aggcggaaca tcgttgtttt cttgattggt aacgggttcg gcggttttgc
     1381 tttcagacgg cattgccgct gcggatgccg tctgaacgga tgtttgcgcg gtttccgctt
     1441 cagggcgcgg ttggggcttt tttgcggagg tttccttttc ggcggtttgt gccgatgggg
     1501 attgaagttc ggtattttca atcacggcgt ttgcatcaca cgaagctgcc gccaagggcg
     1561 caaacgccag catacgcagc agggtcatca taaagccggc gtattcgtcg gtggcgaggc
     1621 tcaggtcgcg tttgccgtgg acggcgattt ggtagtaaag ctggatttgt tcgccaccta
     1681 tggtttgggc gaggcggtgc aaaatatcgg aatcggggtc gtcgtgcgcc aaggcattcg
     1741 gcactgcctg tatcagggcg aggtgttgca gcagtatggc aagttcgccc aaggcgttgt
     1801 caaagccgac ggcacacgca gccatttcct gtgcttttgc cagcagggct tcgccgtctt
     1861 ggttgacgat gcctgtcagc agttcgtaca ggtattgttt atcgaccgca ccgatcattt
     1921 ggcggacgtc ttgttcggca acgctgcccg aacccatggc gatggcttgg tcgagcaggc
     1981 tcaaggcatc gcgcatcgat ccggcggcgg cgcgtcccaa aagttgcagg gcgggggggg
     2041 cgtaggcgat tttttcgctg tcgaggacgt gggcaaggtg gtcggcaacc tgttgcgcgg
     2101 tcatattgcg taagacgaat tgcaggcagc ggctcaagac ggtaacgggg actttgtgcg
     2161 gatcggtcgt ggcaaggatg aatttgacgt gttcgggcgg ctcttccagc gttttgagca
     2221 tagcgttgaa cgcgcttttg gaaagcatat gcacttcgtc gatgatatag actttgtatt
     2281 tgccggcagt cggcgcgtat tgggcgtttt ccaatacttc gcggatgttg tcgatgcctg
     2341 tgttggaggc ggcgtcgatt tcgagcaggt cgacatagcg tccggcatcg atctgcgtac
     2401 agctttcgca cacgccgcaa ggttcgccgt gttgcgcgtt ttcgcagttg aggcttttgg
     2461 caaggatgcg ggcgatggtg gttttgccca cgccgcgcgt accggtcagc aggtaggcgt
     2521 ggtgcagcct gccttcgtcc aaggcatttt gcagggcttt gacgacgtgt tcctgaccga
     2581 ctaagtcggc aaaggttttg ggccgccatt ttcgggcgag aacttgatag tccatgtttt
     2641 tctcttggtt tcggtcgtga tgtttctgtc ggtgcttcgg aatgccgtct gaacggcggt
     2701 ctcgggcggc gtattctagc actttcggtt tattgtccgc gcaagaacag tgcgtccaat
     2761 tctttcaaag tcagtttgac ccaagtcggc ctgccgtggt tgcactggtt gctgcgcggc
     2821 gtgttttcca tatcgcgcag cagcgcgttc atttcgggca gggtaagccg acggccggcg
     2881 cggacggagc cgtggcagga catggtggcg aggatgtggt tttcgtgttc ttcgatggtt
     2941 tggctgctgc cgacttgggc aagttcgctc aatacatctt tggccagtga aacgacgtcg
     3001 gctttaccta gcatggcggg aactgcgcgg acggcaaggg tattgccgcc catgtcggac
     3061 aattccaagc cgaagcctgc cagtgcatcg gcatggtcgg agagggcggc gcattcttcg
     3121 tgggacgtgg cgaaggttac gggaataagc aggcgttggc tttgtagttt gccgtttttc
     3181 tgacgttggc gtttcatttt ttcgtagttg acgcgttcgg cggcggcgtg catatcgatg
     3241 agcaacaggc tgtcttcggc ttgggcaaga atgtagatgc ctagtaattg ggcaatggca
     3301 aaaccgagcg gcggtagttc ggattgggat gggatgccgt ctgaaagcgg cgtatctgtt
     3361 tggggagcag gcgtttcaga cggcatattg ccgaaacgtg cctgctctaa tcggctcaac
     3421 tcaaggtcga tgtcgtcagt ttttttgtaa agctcggcgt aagtattcat ggccgcgcgg
     3481 ctttcgcgca gggacaggct gtgttgttgc ggcgcacgcg cggcttggta aggcatgggc
     3541 gcggttttgc ctgatgaacc aaaggcattg cgtgtatcgg gtttgttgcc tgtcgggtag
     3601 tcggatgcgc tatcaaacag attttcgctg tcgttttcag acggcattgg ggcaggcgta
     3661 acgccggtaa tgtcatgcaa cacttcgcct gcgttgctga cgctttcggt caagtcggcg
     3721 cgtgtgtcgg caagggcttt gttgagcgtg tggaacacga gttggtgcac ctgccggctg
     3781 tcgcggaagc ggatttcggt tttggtcggg tggacgttga catccacggc ttcgggcggc
     3841 aggtcgagaa agaggacgaa agcaggggta agggcgttgt gcaatacgtc gcggtatgcc
     3901 tgtttgacgg cgtggagcat cactttgtcg cgcacgaagc gatggttgac gaagcagtat
     3961 tgtttgtcgg ttttgccttt ggcgaaagtc ggtttggcaa tcgcgccata gagccgcagc
     4021 gcgccgttgc cgctgtcaat ttccaatgag gccgtttgaa aatcatcgcc gacaatggcg
     4081 gcgatacgtt catgcaggct ttgtgcagga agtttgaata cttgtttgcc gtcgcgtttg
     4141 agcgagaagg caatgtgcgg atgcgccagc gcgaggcgtt cgagcatcgt ggcgcagtgg
     4201 gcgtattcgg tggcttcaga cttgaggaac ttgcgccgcg caggggtatt gaagaagagt
     4261 tcggcggctt cgatggtcgt gccgacgggg tgggcggctg ccgtagggct gctgagtttg
     4321 ccgtcttcgg ctttgacttg ggttgcgtgc gaactgtctt cttgacggct ggtcagggtc
     4381 aggcggctga cggaggcgat gcttgccaag ccttcgccgc gaaagcccat gctggcgacg
     4441 tgttccaagt cgttcagggt tttgattttg ctggtggcgt ggcggtggag cgcgagttcg
     4501 atgtcgtccg gatggatgcc gctgccgttg tcgctgacgc gaatcaggcg gatgccgccg
     4561 ccgtccagct cgacatcaat cgccgttgcg cctgcatcga tactgttttc aacgatttct
     4621 ttcaaggcgt tggcagggcg ttcgaccact tcgccggcgg cgatttggtt gacgagatgg
     4681 tcgggcaggg cggcaatgcg tggcataagg taggcttccg ttgcaaaaac gctttattct
     4741 ataataaaac cccttacttt tctgcctgta ttcttgataa aagccgttta tcccgtttgg
     4801 aaaataccag tataatcacg ccgtatcccg taaaattgga gcgcaaagat gtatcactac
     4861 caatccgaag ccacacaatt cctcaaccgt ctgattgaag aaaaacctga gttggaacag
     4921 cagcgtttgg aaaaccgggg gcttttgtgg gatgtcgaac tcaatcccga agaacaggaa
     4981 aacttcgagg cggcaaaagt agcgaaaaaa ccttatacct attaccaaga ctgaacccgc
     5041 cgaaatgacg acccatctgt ccaatgtcgc ccccgacctg caaaactatt tgaacgccat
     5101 cggcgaaccc gaacatcccg ttttgacgcg gctgcgtgag aagaccgggc atcaccgtat
     5161 gggcaaaatg gcgattgcgc gcgaacaggc ggcggttttg gtttggctgg caaagctgat
     5221 tcgcgcggaa aaatatctgg aagtcggcgt atttaccgga tacagcagca ccgcgcttgc
     5281 attggcgttg ccaaaacacg ggcggattac cgcctgcgac atcaatgtaa cctttaccga
     5341 tacggcgcgt caggtttgga acgaggcagg cgtggcacat aaaatcagcc tgcatctgca
     5401 acccgcattg ctgacattgg atgatttgat tgcacagggt gaagccggaa gctacgattt
     5461 ggcactgata gacgcagaca aaccgcccac gccgcaatat ttcgagcgtt gcctcaagct
     5521 tgtccggcaa ggcggcatca ttgccatcga caatattttg ttgaacggaa gggtgatgcg
     5581 cgaagcggct tccgatgcgc cgcccagcgt cggcatcctc aaagatttta atcaaaacct
     5641 gccgaacgac ccgcgcatcg tccccatcac cctgcccgtc ggcgacggtt tgaccctgct
     5701 tctgaaaaaa taatgaagac caaattaccg ctttttatca tttggctgtc tgtgtccgcc
     5761 gcctgttctt cccctgtttc ccgcaatatt caggatatgc ggcccgaacc gcaggcagag
     5821 gcaggtagtt cggacgctat tccctatccc gttcccactc tgcaagaccg tttggactat
     5881 ctggaaggca aaatcgtccg gctgtcgaac gaagtggaaa ccttaaacgg caaagtcaaa
     5941 gcactggaac acgcaaaaac acacccttcc ggcaggacat acgtccaaaa actcgatgac
     6001 cgcaagttga aagagcatta cctcaatacc gaaggcggca gcgcatccgc acataccgtt
     6061 gaaaccgcac aaaacctcta caatcaggcg ctcaaacact ataaaagcgg caggttttct
     6121 gccgctgccg ccctgttgaa aggcgcggac ggaggcgacg gcggcagcat cgcgcaacgc
     6181 agtatgtacc tgttgctgca aagcagggcg cgtatgggga actgcgaatc cgtcatcgaa
     6241 atcggagggc gttacgccaa ccgtttcaaa gacagcccaa ccgcgcccga agccatattc
     6301 aaaatcggcg aatgccaata caggttgcag cagaaagaca ttgcaagggc gacttggcgc
     6361 agcctgatac aggcttaccc gggcagcccg gcggcaaaac gcgccgcctc agccatacgc
     6421 aaacgatagt ttttccattt ttccgctttt taccccatcc gcaccaagga ggatttatga
     6481 ttcaaatcgg catcatcatg ggcagcaaca gcgattggcc cgttatgcgg caggcagcgc
     6541 agtttcttga agagttcggc gtagaatatg aggcgcgcgt cgtttccgca caccgcaccc
     6601 cggatttaat gttccaatac gctgaaaccg cacgggagcg cggcatcaaa gccattatcg
     6661 cgggcgcggg cggcgcggcg cacctgcccg gcatggttgc cgccaagacc accgtccccg
     6721 ttttgggcgt acccgtcccc agcaaatacc tgcgcggcga agattcgctt ttatcgattg
     6781 tacaaatgcc caaaggtgta cccgtcgcca cattcgccat cggcgaggca ggcgcggcca
     6841 atgccgcatt gttcgccgtt tccatgctcg ccaacgaaaa ccccgaactg gcgcaaaaac
     6901 tggcagactt ccgagccaaa caggaacagg ctgttttgag tatggaattg gaacagattt
     6961 aaaacccgcc gtccgcgaat atatagtggc ttaaatttaa accagtacgg cgttccctcg
     7021 ccttgccgta ctatttgtac tgtctgcggc ttcgtcgcct tgtcctgatt tttgttaatc
     7081 cactatacaa atgccgtctg aagccctgtt tcgggtttca gacggcattt ttgcgaacaa
     7141 ctttttatgc ttgttctttt tggcgcattt tttctgccat cagttcgtgc agggttttct
     7201 tcgccggttt catcggcacg cggttttgcg tccaacccaa ctgtttgcgc ggggtcaggt
     7261 tgcggaactt ggtggctgcc caaccgaagg cgcggtaggt tttgctgccg ctgaaaatgc
     7321 cgttgaatgt gcgccacgcc atttgttcgc cgaaggtatg cgatgcgcct tgccctcgga
     7381 tgggatgagg cacggtttcg gtcggcgaac gttgcgcttc gacacgaagc cgctgcattt
     7441 gttcggtaat cgggatacgt accggacaaa cttccacgca cgcgccgcac atcgtgcagg
     7501 cggtcggcag gtcgcgagtg gcatccagac ccaacaggtg cggggaaata atctcgccaa
     7561 tcgggccggg ataggttgtg ccgtatgccg cgccgccgat gcgggtataa accgggcaat
     7621 ggttcataca cgcgccgcaa cggatacatt gcagggtgcg gcgcatttgg tcttcggcat
     7681 aagcctggct gcggccgttg tcgagcagaa ccaagtgcat ttcttgcgga ccgtctaatt
     7741 cttcactgcg gcgcgggccg gtaatcatat tgaaataagt ggtaatgttc tgaccaatgg
     7801 cggagcgcgg cagcagactg tacaagggtg ggatgtcgga caatttcgcc actacttttt
     7861 caataccggt aatggcgata tgcacgggcg gaacggtggt actcaagcga ccgttgcctt
     7921 cgttttcgac cagacacagc gtgcccgttt cggcaacggc gaagtttacg ccgctcaagc
     7981 cgacatcggc agtgctgtaa atatcgcgca gggctttgcg ggcgaagccg gtcagttggt
     8041 ccacgtcgtc tgtaagcggt gtgccgaggt tttggtggaa cagttcgcta acctgttctt
     8101 tggttttatg gattgcgggc atcacgatat gggtcggttt ttcacctgcc atttggacga
     8161 tgaactcgcc caagtcgctt tccaccgctt taatgccttt tgcttcaaga taatggttca
     8221 gctcgatttc ctcgctgacc atcgatttgc ctttgaccat cagcttgccg tttttggctg
     8281 tgatgatgtc gtggataatt tggcaggctt cggcaggggt ttccgcccag tgtactttca
     8341 cgcccaactt ggtcaggttt tcttccaact gctccaacag cgcgggcaat ttggacaggg
     8401 aacgctggcg gatgtgttcg cacaaatcgc gcaggctttg cagctcttct tcgtcggtca
     8461 aaacggcttt gcgtttggtc atcagcatat ccatcgcggt acgcaggctt ttgcgcaaag
     8521 gcttgtcttg aagggaaatt gcggcgtttt gcttgaaagt ttccggcttc atgtggaact
     8581 tgatggtttg cgtagtcatg cgttttcctc caaatcggca ggggaaatgt ggtcgggcag
     8641 gatggcgagg atgaccaaat cgcgcgggcc gtgcgcgccg taagcaagcg tcagttggat
     8701 gtctgcggtt ttggacgggc cggaaatcag gaatacattg gtcggcatac cgttttctac
     8761 cagtttttct ccttcgacgg cattatgaaa ctcgttgtac atcttggacg tatcaaacag
     8821 gcagaaatgc acgggcggaa cgaggctcaa agtacgcggt tcttcggggc tggaaaacag
     8881 catcagtgta ccggtacggg cgatgccgca ttgcgcgccg ctgaagcccg catcgatgtt
     8941 cgtgaaaaac tcggttttcc aagtatcgat ttcgcgctcg aagacaatcg gttcgatatt
     9001 gctgcccgcc aatgcggcac gggcaatttg tccgtgttcg gtcgccaagg gcagcaggat
     9061 gtttttcaaa cccttgcctt ctgccgcttc gcggaaaacc tgcatccaat tgcttttcgt
     9121 cacccaataa atttcggttt tgaccgcgcg cattgcggca gcccaatgtt tcagacgctc
     9181 ggcttcgctg tcccaagaaa cgcccttttc gcggtaataa tcgaaaaccg caggctcttc
     9241 catcggcaag gcatcggctt ttttcagttt tgccaaaata ttttcgcgcg cgctcatgct
     9301 ttgcctccgg tgcgttccaa caagaaggat gcgatatgtt tcggacgcgg catatccggc
     9361 tcgtccttgg cgattttgcc gccgatgttc atcatacagc cgcagtccgc gctgatgatt
     9421 tcggttgcgc cggtttcttt cagcgcggcg actttgtctg ttaccattgc gccggaaata
     9481 tcggcttgtt tgacggagaa tgtgccgccg aagccgcaac attcgctttc gtggtcgtgg
     9541 acgatgcgtt cgacgttttc cataccgtca atcagttgcc agcctgaaag atggacattc
     9601 atttcgcggc gggcggcgca ggaagtgtga acggcgactt tgagcggttc gcccttgtct
     9661 tcgggtttga aaccgatggc aagcaggaaa tgggtaaact cgatgatgcg gccggcgcaa
     9721 tccacagccc tttcctcgta ctcgctgcct ttaaacagcg tcggccagtg gtgtttcatc
     9781 atgccgccgc acgagccgga cggcacgacg atcggccagt tttcagggaa aaggtcgagt
     9841 tgtgctttgg cgacatcgaa ggcttcggtc ggatggccgg atgaataggc aggctggccg
     9901 cagcagcttt gcgccatcgg gaaatggacg cgtatgccct gctgctcgat tagggtaatg
     9961 gcatccatgc ctgcttcggg cataaaaaga tcaaggacgc aagtgccgaa aaaatagaca
    10021 tcggtcggat tgctgtcgta tcggatgatt tttgggggaa tggttgcgct catgtttttt
    10081 gataacggga aacccgtttt tctctgtaga aaggtaagcg tttactttaa gtaattgact
    10141 gttgcgggtc aagtctaatt ttaaaaaata atccggtttt tcttacaaac tgcccccata
    10201 acgcttactg taccttaatc tgatggtttt cgataataat tatcattaca atgcaatgcc
    10261 ggttcgtttg cttgtgaaca ttcaagatgc cgactctgac ggcattcaga cagcatctga
    10321 aaacaataac ggcacaagga tggggtacaa tcgccctatg gaaaaaaaca ccctatccgc
    10381 ccgcgcacca tccccttggc tgccgcttct gctggcaatt gccattttta tgcagatgtt
    10441 ggatgcgacc attttaaata ccgcactgcc tgaaattgcc gccgacctga atgagtcgcc
    10501 tctggatatg caactggcag ttatttccta cacgctgacg gttgccctgc tgattccttt
    10561 gagcggttat ttggcggaca ggttcggaac gaaaaaagtc tttttcggtt cgattgccgt
    10621 ttttatgctc ggatcggcat tgtgcgccgc atcgggttcg ctgtttgaat tgacgctttc
    10681 ccgtgtcgtt cagggcatcg gcggttcgat gctggttccg ataccgcgtc tgaccatctt
    10741 gcgtgtgtac gacaagtcca agctgctcaa cgccatcaat tatgcggtta tgcccgcatt
    10801 aatcggaccg gttttagggc ctttggcggg cggttatctg gtcgaatacg cttcgtggca
    10861 ctggattttc ctgctcaacc tgcccatcgg tctgctgggt ttcatattgg gacgcaacat
    10921 catgcccgat attaaaggca gcaatatctc tttagacttc aaaggttatc tgattttttc
    10981 tgccgccgcg tgcctcttgt tactttcggc agaaagcctg tcgcacgcgc tgcctccgta
    11041 ttttgcactg ttgccgctgt gcggcggact gctgtttgca caccgttatt tccgacatat
    11101 gaaaaccgcg tccaaaccga tttattccgc cgacctgttt ctgatacgca ctttccgtct
    11161 gggactggcg ggcaatctgt tcagccgtct cggcatcagc tcgattcctt ttctgatgcc
    11221 cctgatgttt caagtcgctt tcggcttcgg cgcaagcctg tcgggttggc tggtcgcacc
    11281 cgtcgccctg tcttcgctgc tggtcaaacc gctgattgca ccgctcatga aacgtttcgg
    11341 ctaccgcacg gtactgcttt ggaacaccaa gctgcttgcc gccttcatca tgctgctcgc
    11401 cctgcctgac ggaaactcgc cgctgtggat ttggattttc ctctcgctgg cgatcggcgc
    11461 gtgcaactcc ctacagtttt ctgccatgaa cacgctgacc ctcgccgatt tgcgcccgca
    11521 acagaccggc agcggcaaca gcctgatggc ggtcaaccaa cagcttgcca tcagcatggg
    11581 cattgttgcc ggcgcattaa tccttaaaaa ctggacattt ctgataccgg cttcttcagg
    11641 tctgcattcc gccttccgta tgaccctgct cagtatcggc ggcattaccc ttgcctcgtc
    11701 gttggttttc aagcgtctgc acgtttcaga cggtgcaaac ctgacacgga acacaccgtc
    11761 ctaaagcggt ccgcacgcaa aacttttacc cgtttcaacg tttggattat gattccgcac
    11821 ttccatgcgc gccaacccca aaacacaggc aatgccgtct gaaaccatat ccctgatgaa
    11881 aacacgcagc ctaatttccc ttttatgcct ccttctctgt tcatgttctt catggttgcc
    11941 cccactggaa gaacggacgg aaagccgtca tttcaatact tccaaacccg tccgcctgga
    12001 caacatcctg caaatccggc acacccctca taccaacggg ctatccgata tctatctgtt
    12061 gaacgacccc cacgaagcct ttgccgcccg cgccgccctt atcgaatctg ccgaacacag
    12121 cctcgatttg caatactaca tctggcgcaa cgacatttcc ggccgactgc tgttcaacct
    12181 gatgtacctt gccgcagaac gcggcgtgcg cgtacgcctg ctgttggacg acaacaacac
    12241 gcgcggattg gacgacctcc tgctcgccct cgacagccat cccaatatcg aagtgcgcct
    12301 gttcaacccc ttcgtcttac gaaaatggcg cgcactcggc tacctgaccg acttcccccg
    12361 cctcaaccgc cgcatgcaca acaaatcctt taccgccgac aaccgcgcca ccatactcgg
    12421 cggacgcaat atcggcgacg aatacttcaa agtcggtgaa gacaccgttt tcgccgacct
    12481 ggacatcctc gccaccggca gcgtcgtcgg cgaagtatcg cacgacttcg accgctactg
    12541 ggcaagccat tccgcccaca acgccacgcg catcatccgc agcggcaaca tcggcaaggg
    12601 tcttcaagca ctcggataca acgacgaaac gtccagacac gcgctcctgc gctaccgcga
    12661 aaccgtcgaa cagtcgcccc tctaccaaaa aatacagaca ggacgcatcg actggcagag
    12721 cgtccaaacc cgcctcatca gcgacgaccc tgcaaaagga ctcgaccgcg atcgccgcaa
    12781 accgccgatt gccgtgcggc tgcaagacgc gctcaaacag cccgaaaaaa gcgtctatct
    12841 ggtttcaccc tatttcgtcc ccacaaaatc cggcacagac gcactagcaa aactggtgca
    12901 ggacggcata gacgttaccg ttctgaccaa ctcgctacag gcgaccgacg ttgccgccgt
    12961 ccattctggc tatgtcaaat accgaaaacc gctgctcaaa gccggcatca aactctacga
    13021 gctgcaaccc aaccatgccg tccccgccac aaaagacaaa ggcctgaccg gcagctccgt
    13081 aaccagcctg cacgccaaaa ccttcattgt ggacggcaaa cgcatcttca tcggttcgtt
    13141 caacctcgac ccccgttccg cgcgtctcaa caccgaaatg ggcgttgtta tcgaaagccc
    13201 caaaatcgca gaacagatgg agcgcaccct tgccgatacc acacccgaat acgcctaccg
    13261 cgttaccctc gacaggcaca accgcctgca atggcatgat cccgccaccc gaaaaaccta
    13321 cccgaacgaa cccgaagcca aactttggaa acgcatcgcc gcaaaaatcc tatccctgct
    13381 gcccatagaa agtttattat agaaatatag cggattaaca aaaaccagta cg
//
LOCUS       DAXHPV010000043        12898 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.043, whole genome shotgun sequence.
ACCESSION   DAXHPV010000043 DAXHPV010000000
VERSION     DAXHPV010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12898)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12898)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12898
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.043"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..1617
                     /locus_tag="ACFM6C_000903"
     CDS             <1..1617
                     /locus_tag="ACFM6C_000903"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006306 - obsolete DNA methylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HFC6158383.1"
                     /translation="LYTKLTRKRQEIFFNQTLAFDEIDRLFDAKAFSKFSRYTADGKQ
                     AVGEIKRHSDGTPAENLIIKGNNLIALHSLAKQFKGKVKLIYIDPPYNTGNDGFKYND
                     KFNHSTWLTFMKNRLEIAKELLMEDGSIFVSIDDNEQAYLKILMDEVFGNENFICNFI
                     WEKKTGASDAKQIATITEFVLCYSKNFKTVKLNKNTFSYDTERYKLSDKFEQERGKYY
                     IDNLDRGGLQYSDSLNFAIQCPDGTFTYPNGRTEFVNDGWIWKWSKNKIDWAITNGFL
                     EFRKSKSKKSGWSVCYKNYMLVDNENKPIERSAPYKNLIQDILNTHATDELKKLFGSK
                     VFTTPKPESLLQYLIQIATSENDIVLDYHLGSGTTAAVAHKMNRQYIGIEQMDYIETL
                     AVERLKKVIDGEQGGISKAVNWQGGGEFVYAELAPFNETAKQQILACEDSDGIKTLFE
                     GLCERYFLKYNVSINEFSQIIEEPEFQSLPLDEQKQMVLEMLDLNQMYVSLSEMDDEQ
                     FADCLNDDDKALSRAFYQSVKNQAEKKDGE"
     gene            1607..4390
                     /locus_tag="ACFM6C_000904"
     CDS             1607..4390
                     /locus_tag="ACFM6C_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HFC6158384.1"
                     /translation="MANNKTLFEVIENERKAVKKYKPELLEMPEFTSKNLKYDFFEWQ
                     KSALENFLIFDRTSKLDDFPDLKNKPTHLLFNMATGAGKTMMMAALILYYFEKGYRHF
                     LFFVNQNNIVDKTENNFIDPTHAKFLFTEKILQGDTVIPIRKVETFSPHSDGIEIKFT
                     SIQKLYNDIHTERENQTTLADLHELNLVMLGDEAHHLNAQTKGKKQGELDLEVELKAN
                     AGNAEIERKGWEHMVLELLLNKNGNPSQNVLLEFTATLPENADVQQKYADKIITKFGL
                     KEFLQKGYTKEINLVSSTLGKKERVLHALLFAWYRHQIALKYGIANFKPVMLFRSKTI
                     DESKADYLAFLNWAENVQAVDFSFLTTFSTSLNDSDSDNANEQGKTRTEQALKFMQEK
                     GVEFAHLADWVKQNYQKHNVIITNSETNKTKTEKTDSETEKLLNNLEAADNPIRAIFT
                     VDRLTEGWDVLNLFDIVRLYEGQNGGGSNKKSGKTAAATVSEKQLIGRGVRYFPFAFE
                     GKQPNKRKFDNDMQHELRILEELFYYTHDEQSRYISELKNELRKDGYLPEKDDDKVLA
                     TFKLKSEFAANKDFRELLIWANKKIPNPNAKTNNANSLQANPQTLSFQVHGNQLLQET
                     QFTADENDEKVKQLGTQNNFTQTIKMSEMERHIFNKALHIKGKNSQSLFHFDRLQSKL
                     NIQNRNELQNKLLKDWQIEFLGLGQDKQVRLDDKLAGCLKILEMVEKHLNESDMPFIG
                     TKEFTPKKLWEIFGTPKQKWVKKDDVKTTIATQNDWYVMNNFAGTGLEEALIQFISAR
                     LGDLKSQYDVHLIRNEEVFKLNNFADGEGFMPDFILLLKDKQKSSSNGVNDFLHYQIF
                     IEPKGEHLVETDGWKEEFLEAITVEYGMDKILQKDTPHYRLIGLPFFTDHQKNGQFTE
                     SFPLGAASLEKMK"
     gene            complement(4526..5698)
                     /locus_tag="ACFM6C_000905"
     CDS             complement(4526..5698)
                     /locus_tag="ACFM6C_000905"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HFC6158385.1"
                     /translation="MKRDLSKMTCIEDLRRVAKRKMPRMFYDYIDSGSWTETTYRENT
                     SDFKDIRFRQKVLVNMEGRSLETKMIGQDVKMPVAIAPTGFTGMAHADGEILAARAAE
                     KFGIPFTLSTMSICSIEDVAENTSAPFWFQLYVMRDREFMENLIKRAKDAKCSALVLT
                     ADLQVLGQRHKDIKNGLSAPPKPTIANLINLATKPEWCMKMLNTERRTFRNIVGHAKN
                     VGDLSSLSSWTSEQFDPRLSWDDVARIKDLWGGKLIIKGIMEPEDAEKAAKSGADALV
                     VSNHGGRQLDDTVSAIKALPDIVSAVGSDIEVWMDSGIRSGQDILKAWALGAKGTMIG
                     RAFLYGLGAYGEEGVTRALEILYKEMDISMAFTGHRDIQDVDASILRGKDWGRETV"
     gene            6049..6495
                     /gene="iscR"
                     /locus_tag="ACFM6C_000906"
     CDS             6049..6495
                     /gene="iscR"
                     /locus_tag="ACFM6C_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003690 - double-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HFC6158386.1"
                     /translation="MRLTTKGRFAVTAMLDLAMNAQSGAVKLSAISERQNISLSYLEQ
                     LFGKLRRAGLVESLRGPGGGYILAVPPAQINIAQIISAAEDRLDATQCGSKANCHHGA
                     PCLTHDLWENLNKTINDYLGSVTLQSIIEQKNNGDGSRVVQFTHIH"
     gene            6524..7738
                     /locus_tag="ACFM6C_000907"
     CDS             6524..7738
                     /locus_tag="ACFM6C_000907"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0044571 - [2Fe-2S] cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IscS subfamily cysteine desulfurase"
                     /protein_id="HFC6158387.1"
                     /translation="MTIKTPVYLDYAATTPVDKRVAEKMIPYLTETFGNPASNSHAFG
                     WEAEEAVEKARADIAALINADPKEIVFTSGATESDNLAIKGAANFYKTKGKHLITVKT
                     EHKAVLDTMRELERQGFEVTYLGVQENGLIDLEELKAAIRDDTILISVMWANNEIGVV
                     QDIPAIGEICRERKIVFHVDAAQACGKVPVDVEAAKIDLLSMSAHKVYGPKGIGALYV
                     RRKPRVRLEAQMHGGGHERGFRSGTLPTHQIVGMGEAFRIAKEELEQDMAHYRKLRDI
                     FLKGIEGIEEVYVNGDLEHRAPNNLNISFNFVEGESLIMAVKELAVSSGSACTSASLE
                     PSYVLRALGRNDELAHSSLRITFGRMTTEEEVQFAAELIKSKIGKLRELSPLWEMFKD
                     GIDLNSIEWAAH"
     gene            7805..7933
                     /locus_tag="ACFM6C_000908"
     CDS             7805..7933
                     /locus_tag="ACFM6C_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158388.1"
                     /translation="MNEQDLDLDNLDNLLDDFDGVTVEGGVDSENDDGCEGGACKI"
     gene            7999..8385
                     /gene="iscU"
                     /locus_tag="ACFM6C_000909"
     CDS             7999..8385
                     /gene="iscU"
                     /locus_tag="ACFM6C_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HFC6158389.1"
                     /translation="MAYSDKVIDHYENPRNVGTFDKNDESVGTGMVGAPACGDVMRLQ
                     IKVNDEGIIEDAKFKTYGCGSAIASSSLITEWVKGKSLDDALAIKNSEIAEELELPPV
                     KIHCSILAEDAVKAAVADYRKRQENR"
     gene            8472..8792
                     /gene="iscA"
                     /locus_tag="ACFM6C_000910"
     CDS             8472..8792
                     /gene="iscA"
                     /locus_tag="ACFM6C_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003764837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HFC6158390.1"
                     /translation="MITLTENAAKHINDYLAKRGKGLGVRLGVKTSGCSGMAYNLEFV
                     DEADGDDLIFEGHGARIYIDPKSLVYLDGTQVDYTKEGLQEGFKFENPNVKDSCGCGE
                     SFHV"
     gene            complement(8752..8973)
                     /gene="arfA"
                     /locus_tag="ACFM6C_000911"
     CDS             complement(8752..8973)
                     /gene="arfA"
                     /locus_tag="ACFM6C_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0072344 - rescue of stalled ribosome
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome rescue factor ArfA"
                     /protein_id="HFC6158391.1"
                     /translation="MGGKVQHNKGKIRDNALKALVKSDLFRHKVERKRKGKGSYNGQE
                     VKKWRDGFDTVPPFLCLKHGSFRRSRRSL"
     gene            9055..9555
                     /gene="hscB"
                     /locus_tag="ACFM6C_000912"
     CDS             9055..9555
                     /gene="hscB"
                     /locus_tag="ACFM6C_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001671 - ATPase activator activity
                     [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0044571 - [2Fe-2S] cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly co-chaperone HscB"
                     /protein_id="HFC6158392.1"
                     /translation="MSQYFTLFRIEPAFDIDTENLEQTYRALAARFHPDKFASASAFE
                     QKQAVMMSSTINDAYRTLKNPIDRAAYLLKTSGIDADAPEHTAFAPEFLMQQMEWRET
                     LMEARAGNDLESLKNLDNEIRDEQEKLFCGLKQSFARQDYDTAAQQVRQGRFLDKLRN
                     EISSAL"
     gene            9653..12403
                     /gene="gyrA"
                     /locus_tag="ACFM6C_000913"
     CDS             9653..12403
                     /gene="gyrA"
                     /locus_tag="ACFM6C_000913"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006259 - DNA metabolic process [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HFC6158393.1"
                     /translation="MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPD
                     VRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQ
                     NFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS
                     EHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELID
                     IIQAPDFPTGATIYGLSGVREGYKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQ
                     VNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTP
                     LQDSFGINMVVLVDGQPRLLNLKQILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGK
                     AVALSNIDEIIKLIKESPNAAEAKDKLLAHPWRSSLVEEMLTRSGLDLEMMRPEGLAA
                     NIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKIIDFVDILSKPER
                     ITQIIRDELEEIKTNYGDERRSEINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTT
                     DYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRN
                     SRGRPINNVIQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGI
                     KAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISD
                     GIEDETADSENALPSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQV
                     LTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGG
                     VLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVISNVTEPEV
                     EN"
     gene            12560..12898
                     /locus_tag="ACFM6C_000914"
                     /pseudo
     CDS             12560..12898
                     /locus_tag="ACFM6C_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249760.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         3892 a         3234 c         2873 g         2899 t
ORIGIN      
        1 ttatacacca aattaacccg aaaaagacaa gaaatctttt ttaatcaaac acttgctttt
       61 gatgaaatag ataggctttt tgacgcaaaa gcattctcaa aattctctcg ctataccgca
      121 gacggcaaac aagcggttgg cgaaatcaaa cgccattcag acggcacacc ggccgaaaat
      181 cttattatca aaggcaataa tctgattgcc ctgcattcgc ttgccaaaca gtttaaaggc
      241 aaagtgaagt tgatttatat tgatccgcca tataacacgg gcaatgacgg tttcaaatac
      301 aacgacaaat ttaatcattc cacttggctg acttttatga aaaaccgtct agaaatcgcc
      361 aaagagctgc ttatggaaga cggttcgatt tttgtgtcaa ttgacgacaa cgaacaggca
      421 tatttgaaaa ttttaatgga tgaagttttc ggaaatgaaa atttcatctg caattttatt
      481 tgggaaaaaa agacaggtgc gtccgatgcc aaacagatag cgactattac agagtttgtc
      541 ttatgttact caaagaactt taaaacagtt aaattaaata aaaacacgtt ttcttatgat
      601 acagagagat acaaattaag tgataagttt gaacaggaaa gaggcaaata ttatatcgac
      661 aatttagata gagggggatt gcagtatagt gacagtttga attttgcaat ccaatgtcca
      721 gatggcactt ttacgtatcc gaatggcagg actgaatttg tcaatgatgg ctggatatgg
      781 aaatggagta aaaataaaat tgattgggca ataacaaacg gttttttgga gtttagaaaa
      841 tcaaagtcta aaaaatctgg atggagtgta tgttataaaa actatatgtt ggttgataac
      901 gaaaacaagc cgatagaacg ttctgctccc tataagaact taatacagga tatcttaaat
      961 acacatgcga cagatgaatt gaaaaaactg ttcggcagca aagtttttac tactccaaaa
     1021 cctgagagct tattgcagta tcttattcaa attgccacat ccgaaaacga catcgtccta
     1081 gactaccatt taggcagtgg cacaaccgcc gccgttgccc acaaaatgaa ccgccaatat
     1141 atcggtattg aacaaatgga ttatattgaa acgcttgccg ttgaacgctt gaaaaaagtg
     1201 attgatggcg agcaaggcgg tatttccaaa gccgtgaatt ggcaaggtgg tggcgaattt
     1261 gtttatgccg aacttgctcc atttaacgaa accgcaaaac aacagatttt ggcttgcgaa
     1321 gattcagacg gcatcaaaac gctgtttgaa ggtttatgcg aacgctattt cttgaaatac
     1381 aacgtcagca taaatgaatt tagccaaatt attgaagagc ctgaatttca atctttgcca
     1441 ttagacgaac aaaaacaaat ggtgcttgaa atgttggatt taaatcaaat gtatgtttca
     1501 ttatccgaaa tggatgacga acaatttgca gattgcctga acgatgatga taaagcctta
     1561 agccgtgcat tctatcaatc agtaaaaaat caagcggaga aaaaagatgg cgaataataa
     1621 aacgttgttt gaagtgattg aaaatgaacg taaagcggtt aaaaaataca agcctgaatt
     1681 acttgaaatg ccagaattta cgtccaaaaa cttaaaatat gatttttttg aatggcaaaa
     1741 atctgccctt gaaaactttt tgatttttga ccgcacttca aagctagacg atttccctga
     1801 tttaaaaaat aagccaacgc atttgctgtt caatatggca acaggtgcag gcaaaacgat
     1861 gatgatggcg gcattgattt tgtattattt tgaaaaaggg tatcggcatt ttctgttttt
     1921 tgtgaatcaa aacaatatcg tggataaaac ggaaaataat tttattgacc cgacacacgc
     1981 aaaattttta tttaccgaga agattttgca gggcgatacg gtaattccca ttcgcaaagt
     2041 ggaaacgttc agcccacatt cagacggcat tgaaattaaa tttaccagca ttcaaaagct
     2101 gtataacgat attcacaccg aacgggaaaa ccaaaccaca ttggcggatt tgcacgaatt
     2161 gaatcttgtg atgctgggcg atgaagcaca ccatttaaac gcgcaaacca aaggcaaaaa
     2221 acaaggcgag ttggatttgg aagtggaatt aaaagccaat gcaggcaatg ccgaaattga
     2281 acgcaaaggc tgggagcata tggttttgga attgttactc aataaaaatg gcaatcccag
     2341 ccaaaatgtg ctgttggaat ttaccgccac gctgcctgaa aatgctgacg tgcaacaaaa
     2401 atacgcggat aaaatcatca caaaatttgg cttaaaagaa tttttgcaaa aaggttatac
     2461 caaagaaatc aatttggtat ccagtacgct gggcaagaaa gagcgggtgt tgcacgcttt
     2521 attatttgct tggtatcgcc atcaaatcgc tttgaaatat ggcattgcca atttcaagcc
     2581 tgtgatgttg tttagaagta agacgattga tgaatcaaaa gcggattatc tggcattttt
     2641 aaattgggca gaaaatgtgc aggcggttga tttttcgttt ttaactacat tttcaacaag
     2701 cttgaacgat agcgatagcg ataacgccaa cgaacaaggc aaaacccgca ctgaacaagc
     2761 cctaaaattt atgcaggaaa aaggcgttga gtttgcacat ttggcagatt gggtaaaaca
     2821 aaattatcaa aaacacaatg tgattattac caactccgaa accaacaaaa ccaaaaccga
     2881 aaaaaccgac agcgaaacag aaaaattgct gaataatttg gaagcggctg ataatccgat
     2941 tcgtgccatt tttacggtgg acagattaac cgaaggttgg gacgttctga atttgtttga
     3001 tattgtgcgt ttgtatgaag ggcaaaacgg cggcggttca aataaaaaat caggcaaaac
     3061 ggctgccgcc accgtatcgg aaaagcagtt gattggtcgt ggcgtgcgtt attttccatt
     3121 tgcgtttgaa ggtaaacagc cgaataaacg caaatttgac aacgatatgc aacacgaatt
     3181 gcgtatcttg gaagaattgt tttattacac gcacgatgag caatcccgct atatttcaga
     3241 actgaaaaac gagttgcgaa aagacggtta tttgcctgaa aaagacgatg ataaggtatt
     3301 ggcaacattt aaactcaaat ctgaatttgc cgctaataag gattttagag aattgttaat
     3361 ttgggcgaat aaaaaaatcc ccaacccaaa cgccaaaacc aataatgcaa acagcctgca
     3421 agccaatccg caaacgcttt cattccaagt tcacggcaat caactgttgc aggaaacgca
     3481 atttacagcc gatgaaaatg atgaaaaagt caagcaactt ggcacgcaaa ataattttac
     3541 tcaaaccata aaaatgagtg aaatggagcg gcacattttc aataaagccc tgcatatcaa
     3601 agggaaaaat agtcaatctt tattccattt tgaccgcctg caaagcaaac tcaatattca
     3661 aaatcgcaat gaattgcaaa ataaattgtt gaaagactgg caaattgaat ttttaggatt
     3721 agggcaagac aaacaggttc gcctggacga taaacttgca ggctgcctga aaatcttgga
     3781 aatggttgaa aaacatctga atgaaagtga tatgccgttt atcggtacaa aagaatttac
     3841 acctaaaaaa ttatgggaaa ttttcggcac gccaaaacaa aaatgggtca aaaaagatga
     3901 tgtaaaaacg actattgcca cgcaaaatga ttggtatgtg atgaataatt ttgccggaac
     3961 gggtttggaa gaagcgttaa ttcaatttat ttcagcgcgt ttgggcgatt tgaaatctca
     4021 atatgacgtt catttaatcc gtaatgaaga agtgtttaaa ttgaataact ttgccgatgg
     4081 cgaaggattt atgccggact ttattttatt gctgaaagat aaacaaaaat cttcttccaa
     4141 tggtgtgaac gactttttgc attaccaaat tttcattgag cccaaaggtg agcatttagt
     4201 ggaaactgat ggatggaaag aagaattttt agaagccatc actgtggaat atgggatgga
     4261 taagatcctg caaaaagata caccgcatta tcgtttgatc ggtttaccgt tttttactga
     4321 tcatcagaaa aatggacaat ttacggagtc attcccttta ggtgcggcat cgcttgaaaa
     4381 aatgaagtag tgcattgcag gcaaccccgt ttgacaaaac ttcctttaca aaagggcgtt
     4441 ttgtcagata gttcattatt aaaatacagc caaattttaa tgccgtccga accctgtgtt
     4501 cagacggcat cgtatttttc agtatctaaa ccgtttccct gccccaatct ttacccctta
     4561 aaatcgaggc atcgacatct tgaatatcgc ggtgccccgt aaacgccata gatatatcca
     4621 tttccttata taggatttcc agcgcgcggg ttacgccttc ttctccatac gcgcccaagc
     4681 catacagaaa cgcccgacct atcattgtac ctttcgcgcc caaagcccac gccttcaaaa
     4741 tatcctgacc gctgcggatg ccgctgtcca tccaaacttc gatgtcgctg cccactgcgc
     4801 tgacgatgtc gggcaaggct ttgatggcag acacggtatc gtcgagctgt cggccgccgt
     4861 ggttggaaac gaccaatgcg tccgcgccgc ttttcgctgc tttttccgcg tcttcgggtt
     4921 ccataatgcc tttgataatc agcttgccgc cccacaaatc tttaatgcgc gccacatcgt
     4981 cccagctcag gcgcgggtcg aattgttcgg aagtccatga agacagcgaa gacaaatcgc
     5041 cgacgttctt cgcgtgtccg acgatattgc ggaacgtgcg gcgttccgtg ttcagcattt
     5101 tcatgcacca ttccggtttg gtcgccagat tgattaaatt ggcgatggtc ggtttcggcg
     5161 gcgcggacag gccgtttttg atgtctttgt ggcgttgacc caaaacctgc aaatcggcgg
     5221 tcaataccaa tgccgaacat ttggcatcct tcgcgcgctt aatcaggttt tccataaact
     5281 cgcggtcgcg catcacataa agctgaaacc aaaatggtgc ggaagtgttc tcggcaacgt
     5341 cttcaatcga gcagatggac atggtggaca acgtaaacgg aatgccgaac ttctccgccg
     5401 cccgcgccgc caagatttca ccgtcggcgt gtgccatgcc ggtaaaacca gtcggggcaa
     5461 tcgccaccgg cattttcaca tcctgcccga tcattttggt ttccaggctt cgaccttcca
     5521 tattgaccaa taccttttgt cggaagcgga tatctttaaa atccgaagtg ttttcgcggt
     5581 aggtagtttc cgtccacgaa cccgaatcga tgtaatcgta aaacatacgc ggcatcttgc
     5641 gtttggcaac gcggcgcaag tcttcgatgc aggtcatttt gctcaaatca cgtttcatct
     5701 tgtttttccc tgtttgacag cctgatggaa tatgccgtcc gaaaccgctt gagccttcag
     5761 acagcatttc aggcaatacc caaataaatc actaagattt agataatcta tatcaatatc
     5821 aaaaataaat caaatcgttt tgaaaccgct tgccggcaaa ataccccgac caccgctcct
     5881 caaaaaacat aaccaactga tttaaaaaac caaacaaata aagcaaaatc agactatacc
     5941 gccatttaaa caaacaatcg gcaacagctc ccccttactt gactgaaaca ctcagatatt
     6001 ggacaattcc acccactaat aaaaaaaccg acatgggcaa ccaccaccat gagactgacc
     6061 accaaagggc gtttcgccgt taccgctatg ctggatttgg cgatgaacgc gcaaagcggc
     6121 gccgtcaaac tcagtgccat cagcgaacgc caaaacatat ccctctccta tctcgagcaa
     6181 ttgttcggca aactccgccg tgccggactg gttgaaagcc tgcgcgggcc cggcggcggc
     6241 tacatcctcg ctgtccctcc cgcacaaatc aacatcgccc aaatcatttc cgccgccgaa
     6301 gaccggctgg acgcgaccca atgcggcagc aaagccaact gccaccacgg cgcgccctgc
     6361 ctgacgcacg acctttggga gaatttaaac aaaaccatca acgactacct cggcagcgtt
     6421 accctgcaaa gcatcatcga acagaaaaat aacggcgacg gcagccgcgt cgtccaattt
     6481 acacacatcc attaaataac acccgaaaaa gaaagagcaa accatgacca tcaaaacccc
     6541 cgtttacctc gactacgccg ccaccacacc cgttgacaaa cgcgttgccg aaaaaatgat
     6601 tccctatctg accgaaacct tcggcaaccc cgcctccaac agccacgcat tcggctggga
     6661 agcagaagag gccgtcgaaa aagcccgcgc cgacatcgcc gccctgatta atgccgaccc
     6721 caaagaaatc gtcttcacca gcggcgcgac cgagtccgac aacctcgcca tcaaaggtgc
     6781 ggcaaacttc tacaaaacca aaggcaaaca cctcatcacc gtcaaaaccg aacacaaagc
     6841 cgtactcgac acgatgcgcg aactcgaacg ccaaggtttt gaagtaacct acctcggcgt
     6901 gcaggaaaac ggtttgattg atttggaaga actcaaagcc gccatccgcg acgacaccat
     6961 cctgatttcc gtaatgtggg caaacaacga aatcggcgta gtgcaagaca ttcccgccat
     7021 cggcgaaatc tgccgcgaac gcaaaatcgt cttccacgtc gatgccgccc aagcctgcgg
     7081 caaagtacct gtcgatgtcg aagccgccaa aatcgacctg ctctcgatgt ccgcgcacaa
     7141 agtgtacggc cccaaaggca tcggcgcgct gtacgtccgc cgcaaaccgc gcgtccgcct
     7201 cgaagcccaa atgcacggcg gcggccacga acgcggcttc cgcagcggca cattgccgac
     7261 ccaccaaatc gtcggtatgg gcgaagcctt ccgcatcgcc aaagaagaac tcgaacaaga
     7321 tatggcgcac taccgcaaac tgcgcgacat cttcctcaaa ggcatcgaag gcatcgaaga
     7381 agtctatgtc aacggcgacc tcgaacaccg cgccccgaac aacctgaaca tcagcttcaa
     7441 cttcgtcgaa ggcgaaagcc tgattatggc ggtcaaagaa ctcgccgtat ccagcggctc
     7501 cgcctgcacc tccgcctcgc tcgaacccag ctacgtcctg cgcgcgctcg gccgcaacga
     7561 cgaactggcg cactcatccc tgcgcatcac cttcggccgc atgaccaccg aagaagaagt
     7621 gcaattcgcc gccgaactga ttaaatccaa aatcggcaaa ctgcgcgaac tgtcgccgct
     7681 gtgggaaatg ttcaaagacg ggattgattt gaattcgatt gagtgggcgg cgcattaaag
     7741 cgtaccaaca tgccgtccga acctttagac ggcattccaa aaacaaagca atcaagagaa
     7801 aaatatgaac gaacaagatt tagatttgga caacctcgac aacctgcttg acgattttga
     7861 cggcgttacc gtcgaaggcg gcgtcgattc ggaaaacgac gacggctgtg aaggcggcgc
     7921 gtgcaaaatc taactcaagc cgtctgaaaa ccggcaaaca aaccacttaa atcatcaaaa
     7981 cattaaggaa accacatcat ggcatacagc gataaagtaa tcgaccacta cgaaaatccc
     8041 cgcaacgtcg gcactttcga caaaaacgac gagtccgtcg gcaccggcat ggtcggcgca
     8101 ccggcctgcg gcgacgtgat gcgcctgcaa atcaaagtga acgatgaagg catcatcgaa
     8161 gatgcgaaat tcaaaactta cggctgcggt tccgccatcg cttcgtccag cctgattacc
     8221 gagtgggtca aaggcaaaag cctggatgac gcgctggcaa tcaaaaacag cgaaatcgcc
     8281 gaggagttgg aactgccgcc ggtaaaaatc cactgctcca tcttagcgga agacgcggta
     8341 aaagcggccg ttgccgacta ccgcaaacgt caggaaaaca gataaagccc ttcagacggc
     8401 atcgtcccgc aatgccgtcc gaaccgcccg ccgcttcggg ttcgtccgag gcggtacaac
     8461 aaggaagaaa tatgattacc cttaccgaga atgccgcaaa acacatcaat gactatctcg
     8521 ccaaacgcgg caaaggcttg ggcgtacgct tgggtgtgaa aaccagcggc tgctcgggga
     8581 tggcgtacaa ccttgaattt gtcgatgaag ccgatggcga cgacctgatt ttcgaaggac
     8641 acggcgcacg catttatatc gacccgaaaa gcctggttta tctggacggc acacaagtcg
     8701 attacaccaa agaaggtttg caggaaggtt tcaaatttga aaaccccaat gtcaaagact
     8761 cctgcggctg cggcgaaagc ttccatgttt aagacataaa aatggcggga ccgtatcaaa
     8821 accgtcccgc cattttttca cttcctgccc gttgtagctg cctttgcctt tccttttccg
     8881 ttccaccttg tgccggaaca aatcggattt cactaaggct tttaaagcat tgtcgcgtat
     8941 tttgccttta ttgtgctgca ctttgccgcc catattcagt cctttcgttt aagaagctgc
     9001 agattataag gcaaaaacag ttttctgcca aaatcttaca tttatcatcc tactatgtcc
     9061 caatatttca ccctcttccg gattgaaccc gctttcgata tcgacaccga aaacttggaa
     9121 caaacctacc gcgccttggc cgcccgtttc catcccgata aattcgcttc agcttccgcc
     9181 tttgagcaaa agcaggcagt gatgatgtct tccaccatca acgatgccta ccgcaccttg
     9241 aaaaacccca tcgaccgcgc cgcctacctg ctgaaaacat cgggcatcga tgccgacgcg
     9301 ccggagcata ccgctttcgc ccccgaattc cttatgcagc aaatggaatg gcgcgaaacg
     9361 ctgatggagg cacgggcagg caacgacctt gaatccttga aaaatctcga caacgaaatc
     9421 cgcgacgaac aagaaaaact gttctgcggt ctgaaacagt cgtttgcccg acaagattac
     9481 gacacagccg cacaacaagt ccgccaaggc aggtttctcg acaaactccg caacgaaatt
     9541 tcctcggcat tataatccgc accgtgtttc agacggcgta accgccgcac cgttccgcgt
     9601 caaaatatgc taaaataagc aacaattttt tgccatacga aacattgaaa ccatgaccga
     9661 cgcaaccatc cgccacgacc acaaattcgc cctcgaaacc ctgccggtaa gccttgaaga
     9721 cgaaatgcgc aaaagctatc tcgactacgc catgagcgtc attgtcgggc gcgcgctgcc
     9781 ggacgttcgc gacggtctca agccggtaca ccgccgcgta ctgtacgcga tgcacgaatt
     9841 gaaaaacaac tggaatgccg cctacaaaaa atcggcgcgc attgtcggcg acgtcatcgg
     9901 taaataccac ccccacggcg ataccgccgt atacgacacc atcgtccgta tggcgcaaaa
     9961 tttcgctatg cgttatgtgc tgatagacgg acagggcaac ttcggatcgg tggacgggct
    10021 tgccgccgca gccatgcgct acaccgaaat ccgcatggcg aaaatttccc acgaaatgct
    10081 ggcagacatt gaggaagaaa ccgtcaattt cggcccgaac tacgacggta gcgaacacga
    10141 gccgcttgta ctgccgaccc gtttccccac actgctcgtc aacggctcgt ccggcatcgc
    10201 cgtcggcatg gcgaccaata tcccgccgca caacctttcc gataccgtca atgcctgcct
    10261 gcgcctgctc gatgcacccg acaccgaaat cgacgaactg atcgacatta tccaagcccc
    10321 cgacttcccg accggggcaa ccatctacgg cttgagcggc gtgcgcgaag gctataaaac
    10381 aggccgcggc cgcgtcgtta tgcgcggtaa gacccatatc gaacccatag gcagaaacgg
    10441 cgaacgcgaa gccatcgtta tcgacgaaat cccctatcag gtcaacaaag ccaagctggt
    10501 cgagaaaatc ggcgatttgg ttcgggaaaa aacactggaa ggcatttccg agctccgcga
    10561 cgaatccgac aaatccggta tgcgcgtcgt tatcgagctg aaacgcaacg aaaatgccga
    10621 agtcgtctta aaccaactct acaaactgac tccgctgcaa gacagtttcg gcatcaatat
    10681 ggtggttttg gtcgacggac aaccgcgcct gttgaacctg aaacagattc tctccgaatt
    10741 cctgcgccac cgccgcgaag tcgttacccg acgtacgctt ttccggctga agaaggcacg
    10801 ccatgaaggg catattgccg aaggcaaagc cgtcgcactg tccaatatcg atgaaatcat
    10861 caagctcatc aaagaatcgc ccaacgcagc cgaggccaaa gacaaactgc ttgcgcaccc
    10921 ttggcgcagc agcctcgttg aagaaatgct gacgcgttcc ggtctggatt tggaaatgat
    10981 gcgtccggaa ggattggctg caaacatcgg cttgaaagag caaggttatt atctgagcga
    11041 gattcaggca gatgctattt tacgcatgag cctgcgaaac ctgaccggcc tcgatcaaga
    11101 agaaattgtc gaaagctaca aaaacctgat gggtaaaatc atcgactttg tggatatcct
    11161 ctccaaaccc gaacgcatta cccaaatcat ccgcgacgaa ctggaagaaa tcaaaaccaa
    11221 ctatggcgac gaacgccgca gcgaaatcaa cccgttcggc ggcgacattg ccgatgaaga
    11281 cctgattccg caacgcgaaa tggtcgttac cctgacacat ggcggctata tcaaaaccca
    11341 gccgaccacc gactatcagg cgcagcgtcg cggcgggcgc ggcaaacagg cggctgccac
    11401 caaagacgaa gactttatcg aaaccctgtt tgttgccaac acgcatgatt atttgatgtg
    11461 ctttaccaat ttgggcaagt gtcattggat taaggtttac aaactgcccg aaggcggacg
    11521 caacagccgc ggccgtccga ttaacaacgt catccagttg gaagaaggcg aaaaagtcag
    11581 cgcgattctg gcagtacgcg agttccccga agaccaatac gtcttcttcg ccaccgcgca
    11641 gggaatggtg aaaaaagtcc aactttccgc ctttaaaaac gtccgcgccc aaggcattaa
    11701 agccatcgcg ctcaaagaag gcgactacct cgtcggcgct gcgcaaacag gcggtgcgga
    11761 cgacatcatg ctgttctcca acttaggtaa agccatccgc ttcaacgaat actgggaaaa
    11821 atccggcaac gacgaagcgg aagatgccga catcgaaacc gaaatttcag acggcatcga
    11881 agatgaaacc gccgacagcg aaaacgcact gccgagcggc aaacacggtg ttcgcccgtc
    11941 cggtcgcggc agcggcggtt tgcgcggtat gcgcctgcct gccgacggca aaatcgtcag
    12001 cctgattacc ttcgcccctg aaaccgaaga aagcggtttg caagttttaa ccgccaccgc
    12061 caacggatac ggaaaacgca ccccgattgc cgattacagc cgcaaaaaca aaggcgggca
    12121 aggcaatatt gccattaaca ccggcgagcg aaacggcgat ttggtcgccg caaccttggt
    12181 cggcgaaacc gacgatttga tgctgattac cagcggcggc gtacttatcc gcaccaaagt
    12241 cgaacaaatc cgcgaaaccg gccgcgccgc agcaggcgtg aaactgatta acttggacga
    12301 aggcgaaacc ttggtatcgc tggaacgtgt tgccgaagac gaatccgaac tctccgacgc
    12361 ttctgtaatt tccaatgtaa ccgaaccgga agtcgagaac tgaaaatcat ctcccgatgc
    12421 cgtctgaaga ttcagacggc atttatttta tccctcatcc gtcatccagc ttctcacaat
    12481 atagcggatt atagtcaatt aaaaacaagg ggctgtccta gataactagg gaaattcaaa
    12541 ttaagttaga gttgccccta tgagaaaaag tcgtctaagc cggtataaac aaataaactc
    12601 attgaactgt ttgtcgcagg tgtaactgca agaacgacag cagagttagt aggcgttaat
    12661 aaaagtaccg cagcctatta ttttcatcgt ttacgattac ttatttatca aaacagtccg
    12721 catttggaaa tgtttgatgg cgaagtagaa gcagatgaaa gttattttgc tgaacgacaa
    12781 aaccatatca atggaattga gaacttttgg aaccgggcaa aacgtcattt acgcaagttt
    12841 gacggcattc ccaaagcgca ttttgagctg tatttaaagg ggtacgaacg gcgtttta
//
LOCUS       DAXHPV010000044        12195 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.044, whole genome shotgun sequence.
ACCESSION   DAXHPV010000044 DAXHPV010000000
VERSION     DAXHPV010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12195)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12195)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12195
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.044"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            207..944
                     /locus_tag="ACFM6C_000915"
     CDS             207..944
                     /locus_tag="ACFM6C_000915"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HFC6158394.1"
                     /translation="MIILDKVSKHYQTRDKTRFAAVEPTSLEIRDGEIFGLMGYSGAG
                     KSTLLRLINLLERPDSGKVNVCGQELTALDAAALRQARQNIGMVFQQFNLLNNRTVAG
                     NVAFPLEIAGWPSEKIKARVAECLEIVGLTERAGHYPAQLSGGQKQRVGIARALAPKP
                     QVILADEPTSALDPATTRSVLECLEDINKRFNVTIVIVTHEMSVIRRLCDRAALLDKG
                     KVVEIVEVRGNQIHARSDIGRELIRED"
     gene            947..1633
                     /locus_tag="ACFM6C_000916"
     CDS             947..1633
                     /locus_tag="ACFM6C_000916"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter permease"
                     /protein_id="HFC6158395.1"
                     /translation="MAGLTFQQAVSNIIGMKGEIVRALGETFVMVGLSTTFAVVFGTL
                     LGVLLFVTSSRQLHYNKPVNFLLDNLVNLMRAFPFVILMIAMIPATRAIVGSTIGPVA
                     ASLVLSVSGLFYFARLVEQNLREVPKGVIEAAAAMGAPPIAIVCKVLLNEARAGMVSS
                     ITVLAIGLLSYSAAAGMIGGGGLGDLAIRYGYYRYQTEVIVFIVALLVLLVILIQSIG
                     NALARKLDKR"
     gene            1792..2655
                     /locus_tag="ACFM6C_000917"
     CDS             1792..2655
                     /locus_tag="ACFM6C_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HFC6158396.1"
                     /translation="MKTFFKTLSAAALALILAACGGQKDSAPAASASAAADNGAAKKE
                     IVFGTTVGDFGDMVKEQIQVELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKP
                     YLDDFKKEHNLDITEVFQVPTAPLGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVM
                     LDELGWIKLKDGINPLTASKADIAENLKNIKIVELEAAQLPRSRADVDFAVVNGNYAI
                     SSGMKLTEALFQEPSFAYVNWSAVKTADKDSQWLKDVTEAYNSDAFKAYAHKRFEGYK
                     SPAAWNEGAAK"
     gene            complement(2717..3286)
                     /locus_tag="ACFM6C_000918"
     CDS             complement(2717..3286)
                     /locus_tag="ACFM6C_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HFC6158397.1"
                     /translation="MVRRLIIGISGASGFQYGVKALELLRAQDIETHLVVSKGAEMAR
                     ASETAYARDEVYALADFVHPIGNIGACIASGTFKTDGMLVAPCSMRTLASVAHGFGDN
                     LLTRAADVVLKERRRLVLMVRETPLNLAHLDNMKRVTEMGGVVFPPVPAMYRKPQTAD
                     DIVAHSVAHALSLFGIDTPDSAEWQGMAD"
     gene            3444..4304
                     /locus_tag="ACFM6C_000919"
     CDS             3444..4304
                     /locus_tag="ACFM6C_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HFC6158398.1"
                     /translation="MAKVKGGLGRGLDSLLANGADNSSGDRLTTVAVKDIRPGRYQAR
                     VQIDDEALQELADSIKAQGVIQPVIVREHGLSRYELIAGERRWRAAQIAGLTEIPAVI
                     KTISDETALAMGLIENLQRENLNPIEEAQGLKRLADEFGLTHETIAQAVGKSRSAISN
                     SLRLLSLPEPVQEMLYQRRLEMGHARALLTLPVVEQLELAQKAVKNGWSVREVERRSQ
                     AALQNKRPEPKKTAAADIGRLNDLLTEKLGVNAEIKTANHKKGRIILHFDTPETFDHI
                     LKQLGIDYRP"
     gene            4439..4777
                     /locus_tag="ACFM6C_000920"
     CDS             4439..4777
                     /locus_tag="ACFM6C_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158399.1"
                     /translation="MNTRIIVSAAFVALALAGCGSINNVTVSDQKLQERAAFALGVSP
                     NAVKISNRSNEGIRINFTATVGKRVSQCYVTSVISTIGVTTSDAICLGGGTHKGKSQC
                     NALLKAAGRC"
     gene            5145..5498
                     /locus_tag="ACFM6C_000921"
     CDS             5145..5498
                     /locus_tag="ACFM6C_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit I"
                     /protein_id="HFC6158400.1"
                     /translation="MKQIIILQSAVLSICAAVAFAVWGFAGFLSAVGGGLSYLLPTFV
                     AVLLLKLFRGNPFLQSRMFVFGEILKVVLSLLSMLAVFAVWHQSLVFAPFLMGLLGVS
                     HLVFLVLLRVKDYGR"
     gene            5488..6354
                     /gene="atpB"
                     /locus_tag="ACFM6C_000922"
     CDS             5488..6354
                     /gene="atpB"
                     /locus_tag="ACFM6C_000922"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004464456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HFC6158401.1"
                     /translation="MAGETITAADYIKHHLQSLTSLSDVTQGQGLKNIADFSFINLDA
                     VFFAVLLGVIGSFLLWRGAKKATAGVPGRFQAAVEILFEFVDDMCKSIIHNEKSRKAV
                     APLGLTLFVWIFLMNAMDMLPVDLLPMVWQGITGNHHALLRVVPTADLNTTLALAVGV
                     LLICIYYNIKIKGLGGWFHELFSAPFGAKLAPANFLLNLVEFLSKTVSHGMRLFGNMY
                     AGELVFLLIALLGGAWAASGSVEVMDPILFVFHIIAGLAWAIFHILVITLQAFIFMAL
                     AFVYIGQAHDAH"
     gene            6411..6647
                     /gene="atpE"
                     /locus_tag="ACFM6C_000923"
     CDS             6411..6647
                     /gene="atpE"
                     /locus_tag="ACFM6C_000923"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HFC6158402.1"
                     /translation="MGLIAIACGLIVALGALGASIGIAMVGSKYLESSARQPELIGPL
                     QTKLFLIAGLIDAAFLIGVAIALLFAFVNPFAGA"
     gene            6718..7188
                     /locus_tag="ACFM6C_000924"
     CDS             6718..7188
                     /locus_tag="ACFM6C_000924"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HFC6158403.1"
                     /translation="MNINATLFAQIIVFFGLVWFTMKFVWPPIAKALDERAAKVAEGL
                     AAAERGKSDFEQAEKKVAELLAEGRNQVSEMVANAEKRAAKIVEEAKEQASSEAARIA
                     AQAKADVEQELFRARESLREQVAVLAVKGAESILRSEVDASKHAKLLDTLKQEL"
     gene            7193..7726
                     /locus_tag="ACFM6C_000925"
     CDS             7193..7726
                     /locus_tag="ACFM6C_000925"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HFC6158404.1"
                     /translation="MAEFATIARPYAKALFGLAQEKNQIESWLGGLEKLAAVVQEGKV
                     ASLIDRPETNASEKADILIDLVGLKDKELKNFVIVLAGQKRLSILPEVYAQYQDLTLS
                     FNHIKSAVIYSAYPLTDKQVGELAQMLNKRFDSELKISVEIEPELIGGIKVEVGDQVL
                     DLSVQGKLSALYTTMTN"
     gene            7737..9284
                     /gene="atpA"
                     /locus_tag="ACFM6C_000926"
     CDS             7737..9284
                     /gene="atpA"
                     /locus_tag="ACFM6C_000926"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HFC6158405.1"
                     /translation="MQLNPAEISDLIKAKIENLSVNAEVRTRGTVISVTDGIVRIHGL
                     SDAMQGEMLEFPGNTFGLAMNLERDSVGAVVLGEYEHIKEGDTVTCTGRILEVPVGRE
                     LVGRVVDALGRPIDGKGPINTTLTAPIEKIAPGVIARKSVDQPMQTGLKAIDSMVPVG
                     RGQRELIIGDRQTGKTAVALDAIVNQKGTGVICIYVAIGQKASSIANVVRKLEEHGAM
                     EHTIVVAATASEAAALQYIAPYSGCTMGEFFRDRGEDALIVYDDLSKQAVAYRQISLL
                     LRRPPGREAYPGDVFYLHSRLLERAARVNEHEVEKLTNGEVKGKTGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLETDLFNAGIRPAINAGISVSRVGGAAQTKVIKKLGGG
                     IRLALAQYRELAAFSQFASDLDEATRKQLEHGEVVTELMKQKQFSTLNTAEMALTLWA
                     INNGSYSDVPVAKALAFESEFLSFVRTQHPEVLEAVNASGAMSDESEKTLEAAMKSFK
                     SSYAYQA"
     gene            9309..10184
                     /gene="atpG"
                     /locus_tag="ACFM6C_000927"
     CDS             9309..10184
                     /gene="atpG"
                     /locus_tag="ACFM6C_000927"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003705028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HFC6158406.1"
                     /translation="MAVGKEILTKIRSVQNTQKITKAMQMVSTSKMRKTQERMRLARP
                     YAEKVRMVMSHLAQTNTDHGIPLLESHREIRRVGFILITSDKGLCGGLNANVLKKFLA
                     QVQEYRNQGIEEEIVCLGSKGLMACQSIGLNVVASAVNLGDTPKMEMLLGPLTELFQR
                     YEKHEIDRIHLVYSGFVNTMRQEPRMEVLLPIGENVIGDSAPKSPFSWEYRYEPTALA
                     VLEYLVRRYLESVVYQALSDNMASEQAARMVAMKAATDNAGNAIKELRLVYNKSRQAA
                     ITTELSEIVAGAAAV"
     gene            10222..11619
                     /gene="atpD"
                     /locus_tag="ACFM6C_000928"
     CDS             10222..11619
                     /gene="atpD"
                     /locus_tag="ACFM6C_000928"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HFC6158407.1"
                     /translation="MSQGKIVQIIGAVVDVEFPRDMIPRVYDALKLDENGLTLEVQQL
                     LGDGVVRAIAMGSSDGLKRGMTVSNTGAPITVPVGKGTLGRIVDVLGTPVDEAGPIDT
                     DKSRAIHQAAPKFDELSSTTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMME
                     LINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRV
                     ALTGLTMAEYFRDEKDENGKGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTL
                     AEEMGRLQERITSTQTGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLG
                     IYPAVDPLDSTSRQLDPMVLGQEHYDVARGVQSTLQKYKELRDIIAILGMDELSDEDK
                     LTVMRARKIQRFLSQPFHVAEVFTGSPGKYVALRDTIAGFKAILNGEYDHLPEQAFYM
                     VGSIEEAVEKAKTLN"
     gene            11630..12052
                     /locus_tag="ACFM6C_000929"
     CDS             11630..12052
                     /locus_tag="ACFM6C_000929"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010356394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HFC6158408.1"
                     /translation="MSIMQVEVVSSEQNIYSGEASFVVVPTVQGELGIYPRHEPIMSL
                     VRPGALRLTVPGEDKEVLVAVSGGVLEVQPDKVTILADVAVRSAEMDQARAEEAKKAA
                     EAGISQAKDDKALAEAHKALAAAIAQLKTLDYIRSHKK"
BASE COUNT         2997 a         3117 c         3149 g         2932 t
ORIGIN      
        1 ttttgttaat ccactatatt gtccgaaatg gttgcccgct tcctgcctta ttgacaaaaa
       61 aacgctttcc cgataatatc ctacgaaaat taacctgccg atttgacaca gcttgcgggc
      121 ataacagcta aagcgttccg acaatttcag ctttatcttc cgcgcccgtt gtgtccgaca
      181 tcgggctttg ttgtatggga aagacaatga ttattttgga caaggtttcc aagcattacc
      241 aaacgcgcga caagacccgt tttgccgccg tcgagccgac cagcctcgaa atccgcgacg
      301 gcgaaatctt cgggctgatg ggttattcgg gtgcaggcaa atccaccctg ttgcgactga
      361 ttaacctgtt ggaacgcccc gacagcggca aggtcaacgt ctgcggacaa gagctgaccg
      421 cgctcgatgc cgccgcattg cgtcaggctc ggcagaatat cggcatggtg tttcagcagt
      481 tcaacctgtt gaacaaccgc accgtcgccg gcaacgtcgc cttcccattg gaaatcgccg
      541 gatggccgtc tgaaaaaatc aaagcgcgcg ttgccgaatg tctcgaaatc gtcggactga
      601 ccgaacgcgc cggccactat cccgcccagc tttccggcgg gcagaaacaa cgtgtcggca
      661 tcgcccgcgc gctcgcgccc aagccgcaag tcatcctcgc cgatgaaccc acttccgccc
      721 tcgatcccgc caccacgcgc agcgtcttgg aatgtttgga agacatcaac aaacgcttca
      781 acgtaaccat cgtcatcgta acccacgaaa tgagcgtcat cagacgactg tgcgaccgcg
      841 ccgccctgtt ggataaggga aaagtggtgg aaatcgtcga agtacgcggc aaccaaatcc
      901 acgcccgatc cgacatcggg cgcgaactga ttcgggagga ctgaatatgg caggcttaac
      961 attccaacaa gccgtttcca acatcatcgg tatgaaaggc gaaatcgtcc gcgcattggg
     1021 cgaaaccttc gtgatggtcg gcttgtccac cacattcgcc gtcgttttcg gcacgttgct
     1081 gggcgtgttg ctcttcgtaa cttccagccg ccaactgcat tacaacaagc cggtgaactt
     1141 cctgctcgac aacctcgtca acctcatgcg cgccttcccc ttcgtcattt tgatgattgc
     1201 gatgataccc gccacacgcg ccatcgtcgg cagcaccatc ggcccggttg ccgcctcgct
     1261 ggtgttgagc gtgtcgggat tgttttattt tgcccgactg gtggaacaaa acctgcgcga
     1321 agtcccaaaa ggcgtaattg aagccgccgc cgctatgggt gcgcctccga ttgccatcgt
     1381 ctgcaaagtc ctcttgaacg aagcgcgcgc gggcatggtt tccagtatta ccgtgcttgc
     1441 catcgggctt ttgtcataca gcgcggcggc aggcatgata ggcggcggcg gcttgggcga
     1501 cctcgccatc cgctacggct actaccgcta ccaaaccgaa gtcatcgtct tcatcgtcgc
     1561 cctcctcgtg ctgctcgtta tcctgattca aagcatcggc aacgcattgg cgcggaaatt
     1621 ggataaacgt taaacccgaa tgccgtctga acgccaaaac ccccaccgct atccgaaaaa
     1681 tgctataaaa tccccctgtt cgcggcaaat gccgtctgaa cgccgaatcc ggacggcagg
     1741 actccctgcc cgtcattttt gtttgaaact gccacaacat caggagaaaa tatgaaaacc
     1801 ttcttcaaaa ccctttccgc cgccgcactc gcgctcatcc tcgccgcctg cggcggtcaa
     1861 aaagacagcg cgcccgccgc atccgcttct gccgccgccg acaacggcgc ggcgaaaaaa
     1921 gaaatcgtct tcggcacgac cgtcggcgac ttcggcgata tggtcaaaga acaaatccaa
     1981 gtcgagctgg agaaaaaagg ctacaccgtc aaactggtcg agtttaccga ctatgtacgc
     2041 ccgaatctgg cattggctga gggcgagttg gacatcaacg tcttccaaca caaaccctat
     2101 cttgacgact tcaaaaaaga acacaatctg gacatcaccg aagtcttcca agtgccgacc
     2161 gcgcctttgg gactgtaccc aggcaagctg aaatcgctgg aagaagtcaa agacggcagc
     2221 accgtatccg cgcccaacga cccgtccaac ttcgcccgcg tcttggtgat gctcgacgaa
     2281 ctgggttgga tcaaactcaa agacggcatc aatccgctga ccgcatccaa agcggacatc
     2341 gccgagaacc tgaaaaacat caaaatcgtc gagcttgaag ccgcgcaact gccgcgcagc
     2401 cgtgccgacg tggattttgc cgtcgtcaac ggcaactacg ccataagcag cggcatgaag
     2461 ctgaccgaag ccctgttcca agaaccgagc tttgcctatg tcaactggtc tgccgtcaaa
     2521 accgccgaca aagacagcca atggcttaaa gacgtaaccg aggcctataa ctccgacgcg
     2581 ttcaaagcct acgcgcacaa acgcttcgag ggctacaaat cccctgccgc atggaatgaa
     2641 ggcgcagcca aataaggcag tcgtataaaa tgatgccgtc tgaaccgtat ccgtgttcag
     2701 acggcatttt tgtcctttaa tccgccattc cctgccattc cgccgaatcc ggcgtatcga
     2761 ttccgaacag cgacaaagcg tgtgcaacac tgtgcgccac tatgtcgtcc gccgtctgcg
     2821 gtttgcggta catcgcagga acagggggaa acaccacgcc gcccatttcc gttacccgct
     2881 tcatattgtc caaatgggca aggttcagcg gcgtttcgcg caccatcagc accagccgcc
     2941 gcctttcctt caaaaccaca tccgccgcac gcgtcagcag attgtcgccg aagccgtgcg
     3001 cgacagaggc aagcgtccgc atcgaacagg gggcgaccag catcccgtcc gttttaaacg
     3061 taccgctggc aatgcacgcc ccgatattgc cgatcggatg cacgaagtcc gccaaggcat
     3121 atacctcgtc tctcgcataa gccgtttccg aagcgcgcgc catctccgca cctttcgata
     3181 ccacaaggtg cgtttcgata tcttgcgcgc gtaaaagttc caaagccttc acgccgtatt
     3241 ggaaaccgct cgccccactg atgccgatta tcaaacgccg taccatcatc cgcctttccc
     3301 ataaaaccgc ctgcaacggc aaaccggcta ttatagtgaa aaaacagaaa tccgataaat
     3361 acggatacaa attgtcggca acacccaata tccgataaaa tatccgattt aacatcctat
     3421 ctgaataggc acgggagggc ggtatggcaa aagtaaaagg cggattgggg cgcggtttgg
     3481 attcgctgct cgccaacggc gcagacaaca gcagcggcga ccgattgacc acggttgcag
     3541 ttaaagatat ccggcccggc cgctatcagg cgcgtgttca aatcgatgac gaagccttgc
     3601 aggagctggc agattcgatt aaggcgcaag gcgtgataca gcccgtcatc gtgcgcgaac
     3661 acggactgtc ccgatacgaa ctgattgcgg gggagcggcg ttggcgtgcc gcacagattg
     3721 ccggcctgac cgaaatcccc gccgttatca aaaccatcag cgacgaaacc gcgttggcaa
     3781 tgggtttgat cgaaaacctc cagcgcgaaa acctcaaccc catcgaagaa gcacaaggct
     3841 tgaaacgcct tgccgacgag ttcgggctga cccacgaaac catcgcccaa gccgtcggta
     3901 aaagccgaag cgcgatttcc aacagcctgc gccttttaag cctgcccgaa cccgtgcagg
     3961 aaatgcttta ccaacgccgc ctcgaaatgg ggcacgcccg cgcactgctg accctgcccg
     4021 tcgtcgaaca gctcgaattg gcgcaaaagg ctgtcaaaaa cggctggtcg gtgcgcgaag
     4081 tcgaacgccg cagccaagcc gcccttcaaa acaaacgtcc cgagcccaaa aaaactgccg
     4141 ccgccgacat cggccgcctg aatgatttgc tgactgaaaa actgggtgtc aacgccgaaa
     4201 tcaaaaccgc caaccataaa aaaggcagaa tcatcctgca tttcgacacg cccgaaacct
     4261 tcgaccatat cttgaagcag ttgggcatag attaccgacc ttaattttgc gggatatacc
     4321 gtctgaaata tagagaatag ctttccagat tttaagtggg aaatataatt ctattgacat
     4381 ttttttgctt cacgtaaaaa tcgttttcct gttttcattt ttaattttcg aggaaattat
     4441 gaacacacgc atcatcgttt cggctgcgtt cgttgcgttg gcattagcag gttgcggctc
     4501 aatcaataat gtaaccgttt ccgaccagaa acttcaggaa cgtgccgcgt ttgccttggg
     4561 cgtcagccca aatgccgtaa aaatcagcaa ccgcagcaat gaaggcatac gcatcaactt
     4621 taccgcaact gtgggtaagc gcgtgagcca atgctatgtt accagtgtaa tcagcacaat
     4681 cggcgttacc acttccgatg caatttgttt gggaggcgga acgcacaaag gcaaaagtca
     4741 atgcaatgct ttgcttaaag cggcaggccg ttgctaatcc tttattcgga aaaggtcgtc
     4801 tgaaaatatt ttcagacgac cttttattta ttgagcaaat tccccaaact gccgacaatc
     4861 cgaccgataa actgctacaa tttcgcgttg attttttatt atttccacgt aaagcaaaca
     4921 aatcacgtaa gaacattaaa aatgtaaaga aattgcggac aaactcctta atatcctgta
     4981 attatatgta atgtgtgtta gaatgacacc tgtcgccgtt attcaggcgg cgagcgcggc
     5041 ggattgggat acgttgtttc acaaagatta actgtcgctt gacgtaataa ggcttctaaa
     5101 ttatattagc cgcgccccaa atccgaggcg gaaacattcc ctttatgaag cagattatca
     5161 tcctacaatc cgccgtattg tccatatgcg ccgcagttgc ctttgctgta tggggttttg
     5221 ccggattcct ttcggcggtc ggtggcggtt tgtcctacct gcttcccacg tttgttgcag
     5281 ttttactttt aaaacttttc aggggaaacc ctttcctgca aagcaggatg ttcgtcttcg
     5341 gagagatttt aaaagtagtg ctgtcgctgt tgtccatgct cgccgtattt gctgtatggc
     5401 atcaatcgtt ggtgttcgcc ccgtttctga tggggctgct cggtgtcagc catttggttt
     5461 ttttagtatt gttgagagtg aaagattatg gcaggtgaaa ccattaccgc tgccgactac
     5521 atcaagcacc acttgcagag cttgaccagt ttgtcggatg ttactcaggg tcagggactg
     5581 aaaaacattg ctgatttttc gtttattaac cttgatgccg tcttttttgc cgtcctgttg
     5641 ggcgtaatcg gcagcttcct gttgtggcgc ggtgcgaaaa aagcaacggc aggcgttccc
     5701 ggacgtttcc aggctgccgt ggaaatcttg tttgagtttg tggacgatat gtgtaagagc
     5761 atcattcaca acgaaaagtc tagaaaagcc gtcgcgccgt tgggtctgac gctgtttgtc
     5821 tggatttttc tgatgaacgc gatggatatg ctgccggtcg atttgctgcc gatggtatgg
     5881 cagggcatta ccggcaacca tcacgccctg ctgcgcgtcg taccgactgc cgatttgaac
     5941 accactttgg cactcgctgt cggcgtgttg ctgatttgta tctattacaa catcaaaatc
     6001 aaaggattgg gtggctggtt tcacgagttg ttcagcgcgc cgttcggtgc aaaactcgca
     6061 cctgcgaact ttctgttgaa tttggtcgag tttctttcta aaaccgtatc ccacggtatg
     6121 cggttgttcg gcaatatgta tgcaggcgag ttggtattct tgttgatagc cttgcttggc
     6181 ggtgcttggg cggcttccgg cagcgtcgaa gtcatggatc cgattctgtt tgtattccac
     6241 attattgccg gtttggcatg ggcgattttc catattttgg tgattaccct gcaggcgttt
     6301 attttcatgg cgttggcgtt cgtctatatc ggacaggcac atgatgcgca ctgattttcc
     6361 taagtagttt gtttttgtag tttaaccttt gtttctttaa ggagtttaaa atgggtttga
     6421 ttgctatcgc atgtggtttg atcgttgcat tgggtgcatt gggtgcctct atcggtatcg
     6481 caatggtcgg ttctaaatat ttggagtctt ctgcccgtca gcccgaactg atcggtccgc
     6541 tgcaaaccaa actgttcctg attgccggtt tgattgatgc cgcattcttg attggtgtcg
     6601 ccattgcact gctgttcgcc ttcgttaacc cgtttgcagg tgcataatca ggacggattc
     6661 gtccgttccg tacaggcgca gcctgtttga ttaaccccag tacgaaggtt aagtaacgtg
     6721 aatatcaatg caacattatt cgctcaaatc atcgtctttt tcggtttggt atggtttacc
     6781 atgaaattcg tgtggccgcc gattgcaaaa gctttggatg agcgtgccgc aaaagtcgcc
     6841 gaaggcttgg ctgccgccga gcgtggtaaa agcgatttcg agcaggctga aaaaaaggtt
     6901 gcagaactct tggcagaagg gcgtaatcag gtttccgaaa tggttgccaa cgccgaaaaa
     6961 cgtgccgcca aaattgtcga agaagccaaa gaacaggctt cttccgaggc ggcgcgcatt
     7021 gcagctcagg caaaggccga tgtggagcag gaattgttcc gcgcacgcga atccctgcgc
     7081 gagcaggttg ccgtgttggc tgtcaaaggt gccgaatcta ttttgcgcag cgaagtcgat
     7141 gcttccaaac acgcaaaact gctcgatacc ctgaaacagg agctgtaatc ttatggcaga
     7201 gttcgcaacg attgccagac cttatgcaaa ggcattgttc ggtctggctc aggaaaaaaa
     7261 ccaaattgag tcttggttgg gcggactgga aaaacttgcg gcggttgttc aggaagggaa
     7321 ggtggcttca ttgattgacc gtcctgaaac gaatgcttca gaaaaagcag atatcctcat
     7381 cgatttggtc ggtttgaaag acaaggagtt gaaaaacttt gttatcgtct tggccgggca
     7441 gaaacgtttg tcgatattgc cggaagtata tgctcaatat caagacttga ccttatcatt
     7501 caaccatatc aaatctgccg tcatttacag tgcctatccg ttgaccgaca aacaggtcgg
     7561 cgagttggcg caaatgctga ataagcgttt cgacagcgag ctgaaaatct ctgtcgaaat
     7621 cgaaccggag ctgattggcg gcataaaagt tgaagtgggt gatcaggttt tggatttgtc
     7681 tgtacaaggc aaattgagtg ccttgtacac gactatgacg aattaggaga gttttcatgc
     7741 agcttaatcc tgctgaaatt agcgatttga ttaaagccaa gatcgaaaat ctgtctgtaa
     7801 atgccgaagt gcgtactcgt ggtacggtga tttcggtaac tgacggtatc gttcgcatcc
     7861 atggtttgtc agatgcaatg caaggtgaga tgctcgaatt cccgggtaac actttcggct
     7921 tggcgatgaa cctggagcgc gactccgtcg gcgccgtagt gttgggcgag tacgaacata
     7981 ttaaagaagg cgacacggtt acctgtaccg gtcgtatctt ggaagtgccg gtcggacgcg
     8041 aactggtcgg acgcgtcgtt gatgcattgg gtcggcctat cgacggcaaa ggcccgatta
     8101 atacaacttt gaccgcccct atcgaaaaaa tcgcaccggg cgtgattgcg cgcaaatcgg
     8161 ttgaccagcc gatgcaaacc ggtctgaagg cgattgactc tatggttcct gtcggtcgcg
     8221 gtcagcgtga gttgattatt ggcgaccgtc aaaccggtaa aacggccgta gcattggatg
     8281 ccatcgtcaa ccaaaaaggt acgggtgtta tctgtatcta tgtcgctatc ggtcaaaaag
     8341 catcttctat tgccaacgtg gtccgcaaat tggaagagca tggcgcgatg gaacacacca
     8401 tcgtggttgc tgcaactgca tctgaagcgg cggcattgca atatatcgca ccttactccg
     8461 gttgtacgat gggtgaattc ttccgcgacc gcggcgaaga tgccttgatt gtttatgacg
     8521 atttgtccaa acaggctgtg gcttaccgtc aaatttccct gcttttgcgc cgtccgcccg
     8581 gccgcgaagc ctatcccggc gatgtgttct acctgcattc ccgtctgttg gaacgtgcag
     8641 cacgtgtcaa tgaacacgaa gtggagaaat tgaccaacgg cgaagtaaaa ggcaaaaccg
     8701 gttctctgac cgcgttgccg attatcgaaa cccaagcggg cgacgtatct gctttcgttc
     8761 cgactaacgt catttcgatt accgacggtc agattttctt ggaaaccgac ctcttcaacg
     8821 ccggtatccg tcctgcaatc aatgccggta tttccgtatc ccgcgtaggc ggtgctgcac
     8881 aaaccaaagt gattaaaaag ctgggtggcg gtatccgttt ggcgttggcg caatatcgtg
     8941 aattggcggc tttctcgcaa tttgcatccg atttggatga agctacgcgc aaacaattgg
     9001 agcatggcga agtcgtaacc gaactgatga aacagaaaca gttcagtacg ttgaatacgg
     9061 ctgaaatggc tttgaccctt tgggcaatca acaacggttc gtattctgat gttccggttg
     9121 ccaaagctct ggcttttgaa tctgaatttt tgagctttgt ccgtacccaa catccggaag
     9181 ttttggaagc cgtcaatgct tcaggtgcaa tgtccgacga gagcgagaaa acgcttgaag
     9241 cagccatgaa atccttcaaa tcttcttacg cctatcaggc ataaggcttg aagtgaaagg
     9301 agtctgaaat ggcagtagga aaagagattc tcaccaaaat ccgcagtgtt cagaataccc
     9361 aaaagatcac taaagcgatg cagatggtgt caacctctaa aatgcggaag actcaggaac
     9421 ggatgcgttt ggcgcgtccg tatgccgaaa aagtgcgtat ggtgatgagc catcttgcgc
     9481 aaaccaatac cgatcatggt attccgttac tggaatctca tcgggaaatc agacgtgtcg
     9541 gttttatttt gattacgtct gataagggtt tgtgtggcgg tttgaacgcc aacgtgctga
     9601 aaaagttttt ggcacaagtt caagagtatc ggaatcaagg tattgaagag gaaatcgtat
     9661 gccttggcag taaaggtctg atggcgtgtc agagcattgg tctgaatgtg gttgccagtg
     9721 ccgtaaattt gggcgatacc ccaaaaatgg aaatgctgct cggacctttg acagaactct
     9781 tccaacggta tgagaaacat gaaattgaca gaatccatct ggtgtattcg ggttttgtca
     9841 ataccatgcg tcaagaaccg agaatggaag tattgctgcc tatcggtgag aacgtgattg
     9901 gcgattcagc tcccaaatca ccgttcagct gggaataccg ctacgaaccg actgcacttg
     9961 cagtgttgga atatctggtt cgccgctatt tagagtctgt ggtttatcag gcgttgagcg
    10021 acaatatggc atccgaacag gcagcccgca tggttgccat gaaagctgca acagacaatg
    10081 caggcaatgc catcaaagag ttgcgtttgg tatataacaa atcgcgtcaa gctgcgatta
    10141 ccacggaatt gtcagaaatt gtagcaggtg cggcggctgt ctgatgccgt ctgaatcctg
    10201 tacggaaatt aggatacgat aatgagccaa ggcaaaatcg tacaaattat cggtgcggtt
    10261 gttgacgtgg aatttccacg cgacatgatt ccgcgcgttt acgacgcttt gaaattagac
    10321 gaaaacggtc tgactttgga agtccaacag cttttgggcg acggcgtagt ccgtgccatt
    10381 gcgatgggca gctcggacgg tttgaaacgc ggcatgactg tgagcaatac cggtgcgccc
    10441 attactgtgc cggtaggtaa aggtacgttg ggacgcattg tcgatgtatt gggaacgcct
    10501 gttgacgaag caggtccgat cgataccgac aagagccgtg ccatccacca agctgcccct
    10561 aagtttgacg aactgtcttc cacaaccgaa ttgctcgaaa cgggcattaa agtgattgac
    10621 ttgctgtgtc cgtttgccaa aggcggtaaa gtaggtctgt tcggcggtgc cggtgtgggt
    10681 aaaaccgtga acatgatgga attgatcaac aacatcgcca aagcgcacag cggcttgtcc
    10741 gtgttcgcag gcgtgggtga gcgtacccgc gaaggtaacg acttctacca cgagatgaaa
    10801 gattccaacg tattggataa agtggcaatg gtttacggtc agatgaacga acctccgggc
    10861 aaccgtttgc gcgtcgcatt gaccggtttg accatggcgg aatacttccg tgacgaaaaa
    10921 gacgaaaacg gcaaaggccg cgacgtattg ttcttcgtgg acaacatcta ccgttacacc
    10981 ctggctggta ccgaagtatc cgcattgttg ggtcgtatgc cgtctgcagt gggctaccaa
    11041 ccgacattgg cagaagaaat gggtcgtttg caggagcgta ttacctctac ccaaaccggt
    11101 tctattactt ccatccaagc cgtatatgta cctgcggacg acttgaccga cccgtctccg
    11161 gcaacaacgt tcgcccactt ggacgcaacc gtcgtattga gccgcgatat tgcctctttg
    11221 ggtatttacc cggcagtcga tccgcttgat tctacttcgc gccaactgga tccgatggta
    11281 ttgggtcaag agcactacga cgtagcgcgc ggcgtacagt ccaccctgca gaaatacaaa
    11341 gaattgcgcg acatcatcgc catcttgggt atggacgaat tgtctgacga agacaaactg
    11401 accgtaatgc gtgcgcgtaa aatccaacgc ttcctgtccc aaccgttcca cgttgccgaa
    11461 gtgtttacag gttctccggg caaatatgtc gccctgcgcg ataccattgc cggcttcaaa
    11521 gccatcttga acggcgaata cgaccatctg cccgaacagg cattctacat ggtcggcagc
    11581 atcgaagaag cggttgagaa agcgaaaacc ttaaactgag gaggtcggca tgagcatcat
    11641 gcaagttgag gtggtcagta gcgagcaaaa catctattcg ggcgaagcca gctttgtagt
    11701 ggttccgacc gttcaaggtg agcttggtat ttacccgcga cacgagccga ttatgagttt
    11761 ggtgcggccg ggggctttgc gtttgaccgt tccgggcgag gataaagagg ttttggttgc
    11821 tgtttccggc ggtgttttgg aagtacagcc tgataaagta actatcttgg cggatgttgc
    11881 cgtccgcagt gcggagatgg atcaggcacg tgcggaagag gcgaaaaaag ccgcagaagc
    11941 gggcatttcc caagctaaag acgataaggc tttggcggag gcgcataaag cattggctgc
    12001 tgcgattgca cagctcaaaa ctttggacta tatccgttcg cacaagaaat aaacttgttt
    12061 ggtttggaaa agcacgaccg tttggtcgtg ctttttattt tccggattta aattaaagac
    12121 tgtgtttgga tatggcgttg gcaggcatag cctgctttaa ggtattcaat agggcagcct
    12181 gccgcctaac cgaaa
//
LOCUS       DAXHPV010000045        12080 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.045, whole genome shotgun sequence.
ACCESSION   DAXHPV010000045 DAXHPV010000000
VERSION     DAXHPV010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12080)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12080)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12080
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.045"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(332..1108)
                     /gene="lpxA"
                     /locus_tag="ACFM6C_000930"
     CDS             complement(332..1108)
                     /gene="lpxA"
                     /locus_tag="ACFM6C_000930"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HFC6158409.1"
                     /translation="MTLIHPTAVIDPKAELDSGVKVGAYTVIGPNVQIGANTEIGPHA
                     VINGHTSIGENNRIFQFASLGEIPQDKKYRDEPTKLIIGNGNTIREFTTFNLGTVTGI
                     GETRIGDDNWIMAYCHLAHDCVVGNHTIFANNASLAGHVTIGDYVVLGGYTLVFQFCH
                     IGDYAMTAFAAGVHKDVPPYFMASGYRAEPAGLNSEGMRRNGFTAEQISAVKDVYKTL
                     YHRGIPFEEAKADILRRAETQAELAVFRDFFTQSTRGIIR"
     gene            complement(1195..1644)
                     /gene="fabZ"
                     /locus_tag="ACFM6C_000931"
     CDS             complement(1195..1644)
                     /gene="fabZ"
                     /locus_tag="ACFM6C_000931"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0019171 -
                     (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HFC6158410.1"
                     /translation="MDVQLPIEAKDIQKLIPHRYPFLQLDRITAFEPMKTLTAIKNVT
                     INEPQFQGHFPDLPVMPGVLIIEAMAQACGTLAILSEGGRKENEFFFFAGIDEARFKR
                     QVIPGDQLVFEVELLTSRRGIGKFNAVAKVDGQVAVEAIIMCAKRVV"
     gene            complement(1678..2724)
                     /gene="lpxD"
                     /locus_tag="ACFM6C_000932"
     CDS             complement(1678..2724)
                     /gene="lpxD"
                     /locus_tag="ACFM6C_000932"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HFC6158411.1"
                     /translation="MIPATYTLSQITARLGGEWRGEDISVTAVRPLADAQAEHISFLA
                     NPKYKAEVHDSSAGAVIVSAKAADGFEGRNLIVADDPYLYFAKVARLFSPVVKARGGI
                     HPTAVVEPGATVPTSCEIGANVYIGANTVLGEGCRILANAVVQHDCKLGDEVVLHPNA
                     VVYYGCTLGRRVEIHSGAVIGADGFGLAFAGDSWFKIPQTGAVTLGDDVEIGSNTNID
                     RGAMSDTTVGNGTKIDNQVQIGHNCKIGSHTVIAAKTGISGSVTIGSYCIIGGGVGTV
                     GHIEIADKTTIGGGTSVTHSITESGKHLAGIFPMSTHKEWARNAVYIHRLSEMNKRLK
                     TLEQQLSDTGQDSK"
     gene            complement(2757..3257)
                     /locus_tag="ACFM6C_000933"
     CDS             complement(2757..3257)
                     /locus_tag="ACFM6C_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HFC6158412.1"
                     /translation="MTRLTRAFAAALIGLCCTAGAHADTFQKIGFINTERIYLESKQA
                     RKIQKTLDSEFSARQDELQKLQREGLDLERQLAEGKLRNAKKAQAEEKWRGLVAAFRK
                     KQAQFEEDYNLRRNEEFASLQQNANRVIVKIAKQEGYDVILQNVIYVNTQYDVTDSVI
                     KEMNAR"
     gene            complement(3323..5716)
                     /gene="bamA"
                     /locus_tag="ACFM6C_000934"
     CDS             complement(3323..5716)
                     /gene="bamA"
                     /locus_tag="ACFM6C_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_process: GO:0071709 - membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HFC6158413.1"
                     /translation="MKLKQIASALMMLGISPLAFADFTIQDIRVEGLQRTEPSTVFNY
                     LPVKVGDTYNDTHGSAIIKSLYATGFFDDVRVETADGQLLLTVIERPTIGSLNITGAK
                     MLQNDAIKKNLESFGLAQSQYFNQATLNQAVAGLKEEYLGRGKLNIQITPKVTKLARN
                     RVDIDITIDEGKSAKITDIEFEGNQVYSDRKLMRQMSLTEGGIWTWLTRSNQFNEQKF
                     AQDMEKVTDFYQNNGYFDFRILDTDIQTNEDKTKQTIKITVHEGGRFRWGKVSIEGDT
                     NEVPKAELEKLLTMKPGKWYERQQMTAVLGEIQNRMGSAGYAYSEISVQPLPNAETKT
                     VDFVLHIEPGRKIYVNEIHITGNNKTRDEVVRRELRQMESAPYDTSKLQRSKERVELL
                     GYFDNVQFDAVPLAGTPDKVDLNMSLTERSTGSLDLSAGWVQDTGLVMSAGVSQDNLF
                     GTGKSAALRASRSKTTLNGSLSFTDPYFTADGVSLGYDVYGKAFDPRKASTSIKQYKT
                     TTAGAGIRMSVPVTEYDRVNFGLAAEHLTVNTYNKAPKRYADFIKQYGKTNGTDGSFK
                     GWLYKGTVGWGRNKTDSALWPTRGYLTGVNAEIALPGSKLQYYSATHNQTWFFPLSKT
                     FTLMLGGEVGIAGGYGRTKEIPFFENFYGGGLGSVRGYESGTLGPKVYDEYGDKISYG
                     GNKKANVSAELLFPMPGAKDARTVRLSLFADAGSVWDGKTYDDNSSSATGGRVQNIYG
                     AGNTHKSTFTNELRYSAGGAVTWLSPLGPMKFSYAYPLKKKPEDEIQRFQFQLGTTF"
     gene            complement(5774..7114)
                     /gene="rseP"
                     /locus_tag="ACFM6C_000935"
     CDS             complement(5774..7114)
                     /gene="rseP"
                     /locus_tag="ACFM6C_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HFC6158414.1"
                     /translation="MHTLLAFIFAILILVSLHEFGHYIVARLCGVKVVRFSVGFGKPF
                     FTRKRGDTEWCLAPIPLGGYVKMVDTREGEVSEADLPYAFDKQHPAKRIAIVAAGPLT
                     NLALAVLLYGLSFSFGVTELRPYVGTVEPDTIAARAGFQSGDKIQSVNGTPVADWGSA
                     QTEIVLNLEAGKVAVGVQTASGAQTVRTIDAAGTPEAGKIAKNQGYIGLMPFKITTVA
                     GGVEKGSPAEKAGLKPGDRLTAADGKPIASWQEWANLTRQSPGRKIALTYERAGQTHT
                     ADIRPDTVEQPDHTLIGRVGLRPQPDRAWDAQIRRSYRPSVVRAFGMGWEKTVSHSWT
                     TLKFFGKLISGNASVSHISGPLTIADIAGQSAELGLQSYLEFLALVSISLGVLNLLPV
                     PVLDGGHLVFYTAEWIRGKPLGERVQNIGLRFGLALMMLMMAVAFFNDVTRLLG"
     gene            complement(7149..8384)
                     /gene="ispC"
                     /locus_tag="ACFM6C_000936"
     CDS             complement(7149..8384)
                     /gene="ispC"
                     /locus_tag="ACFM6C_000936"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070402 - NADPH binding [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HFC6158415.1"
                     /translation="MPSENASDGIRYKVILIMTPQVLTILGSTGSIGESTLDVVSRHP
                     EKFRVFALAGHKQVEKLAAQCQTFRPEYAVVADAEHAARLEALLKRDGTATQVLHGAQ
                     ALVDVASADEVSGVMCAIVGAVGLPSALAAAQKGKTIYLANKETLVVSGALFMETARA
                     NGAAVLPVDSEHNAVFQVLPRDYAGRLNEHGIASIILTASGGPFLTADLNTFDSITPA
                     QAVKHPNWSMGRKISVDSATMMNKGLELIEAHWLFNCPPDKLEVVIHPQSVIHSMVRY
                     RDGSVLAQLGNPDMRTPIAYCLGLPERIDSGVGDLDFDALSALTFQKPDFDRFPCLKL
                     AYEAMNAGGAAPCVLNAANEAAVAAFLDGQIKFTDIAKTVAHCLAQDFSDGIGDIEGL
                     LAQDARTRAQARAFIGTLR"
     gene            complement(8389..9186)
                     /locus_tag="ACFM6C_000937"
     CDS             complement(8389..9186)
                     /locus_tag="ACFM6C_000937"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004605 - phosphatidate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0016024 - CDP-diacylglycerol biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HFC6158416.1"
                     /translation="MLKQRVITAMWLLPLMLGMLFYAPQWLWAAFCGLIALIALWEYA
                     RMGGLCKIKTNHYLAATLVFGVVAYAGGWMLPNLVWYVVLAFWLAVMPLWLRFKWRLN
                     GGWQVYAVGWLLVMPFWFALVSLRPHPDDALPLLAVMGLVWVADICAYFSGKAFGKHK
                     IAPAISPGKSWEGAIGGAVCVAVYMTAVRSAGWLAFDTGWFDTVLIGLVLTVVSVCGD
                     LLESWLKRAAGIKDSSNLLSGHGGVFDRTDSLIAVISVYAAMMSVLN"
     gene            complement(9189..9935)
                     /locus_tag="ACFM6C_000938"
     CDS             complement(9189..9935)
                     /locus_tag="ACFM6C_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HFC6158417.1"
                     /translation="MKSSTQAVLEHTAIPKHIAVIMDGNGRWAKKRFLPRIMGHKRGL
                     DALENMVKHCAKLGVQYLTVFAFSTENWRRPEDEVSFLMGLFLQALQKQVRRLHENNM
                     RLKILGSRERFSRQILKGIEEAEALTANNTGLTLSIAADYGGRWDILQAANKLIAKGV
                     SEITEDTLAKHLMLGDAPEPDLFIRTGGETRISNFLLWQMAYAELYFTDILWPDFDGK
                     ALDDAVASFQKRERRFGRTSEQLPIEQQRN"
     gene            complement(9991..10548)
                     /gene="frr"
                     /locus_tag="ACFM6C_000939"
     CDS             complement(9991..10548)
                     /gene="frr"
                     /locus_tag="ACFM6C_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HFC6158418.1"
                     /translation="MINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEY
                     WGSMVPVSQVANVTLLDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPM
                     PMLTEERRKDLIKVVRGEAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAV
                     QKLTDKYITEADKLLTTKEEDLMAI"
     gene            complement(10728..11894)
                     /locus_tag="ACFM6C_000940"
     CDS             complement(10728..11894)
                     /locus_tag="ACFM6C_000940"
                     /inference="COORDINATES: protein motif:HMM:NF016513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HFC6158419.1"
                     /translation="MLFHISASDGTTDMNTSQRNRLVSRWLNSYERYRYRRLIHAVRL
                     GGAVLFATATARLLHLQHGEWIGMTVFVVLGMLQFQGAIYSKAVERMLGTVIGLGAGL
                     GVLWLNQHYFHGNLLFYLTVGTASALAGWAAVGKNGYVPMLAGLTMCMLIGDNGSEWF
                     DSGLMRAMNVLIGAAIAIAAAKLLPLKSTLMWRFMLADNLTDCSKMIAEISNGRRMTR
                     ERLEQNMVKMRQINARMVKSRSHLAATSGESRISPAMMEAMQHAHRKIVNTTELLLTT
                     AAKLQSPKLNGSEIRLLDRHFTLLQTDLQQTVALINGRHARRIRIDTAINPELEALAE
                     HLHYQWQGFLWLSTNMRQEISALVILLQRTRRKWLDAHERQHLRQSLLETREHG"
     gene            complement(11927..12002)
                     /locus_tag="ACFM6C_000941"
     tRNA            complement(11927..12002)
                     /locus_tag="ACFM6C_000941"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11967..11969),aa:Thr,seq:cgt)
BASE COUNT         2270 a         3088 c         3766 g         2956 t
ORIGIN      
        1 tttaaaacac cacttttgta gtgtcctgta atttcagcac agaatattca ataagacaat
       61 atgttctttt gaaaaatact tttggttttt tctccgaaag caggtcggtt caagctgcgg
      121 aaattgtttg caattcttta aaagcagcgg cggaggtcac aatgaaatgt ccgaataggg
      181 atgtggcggg cggcagaaat catcaatgct gccgactgcc atacttctga aatctacaaa
      241 atgatgcatc gatcaaacaa tataccgctt taaaaaaacc gatgccgtct gaaacgcttt
      301 cggggtttca gacggcatca aaagggtacg gtcagcggat gatgccgcgc gtcgattgtg
      361 tgaaaaagtc tcggaatacg gcaagctcgg cttgggtttc ggcgcggcgg aggatgtctg
      421 ccttggcctc ttcaaacgga atgccgcgat ggtagagggt tttgtacacg tctttgacgg
      481 cggaaatctg ttctgcggta aaaccgttgc ggcgcatgcc ttcgctgttg agccccgccg
      541 gttcggcgcg gtagcccgat gccataaagt agggcggtac gtctttgtgt acgcctgcgg
      601 cgaaggcggt catagcgtag tcgccgatgt ggcagaattg gaaaaccagc gtgtagccgc
      661 ccaaaacgac gtagtcgccg atggtaacgt gtccggcaag cgaggcgttg ttggcgaaga
      721 tggtgtggtt gccgaccacg cagtcgtgcg cgaggtggca gtacgccata atccagttgt
      781 cgtcgccgat acgggtttcg ccgatgccgg ttaccgtgcc taaattaaag gtggtgaatt
      841 cgcggatggt gttgccgttg ccgataatca gcttggtcgg ctcgtcgcgg tattttttgt
      901 cctgcgggat ttcgccgagg ctggcaaatt ggaaaatgcg gttgttttcg ccgatgctgg
      961 tgtggccgtt gatgacggcg tgcgggccga tttcggtatt cgcgccgatt tggacgttgg
     1021 ggccgatgac ggtgtacgcg ccgactttga cgccggagtc gagttcggct ttggggtcga
     1081 tgacggcggt cgggtggatg agggtcatgt ttttcctttc ctgtcgtgtt gccgcgaaga
     1141 tgcgcgacgg caacaggtcg tctgaaaact ttcagacgac ctttttctga acactcaaac
     1201 cacgcgtttg gcacacatga tgatggcttc gacggcgact tgcccgtcca ctttggcaac
     1261 ggcgttgaat ttgccgatgc cgcgccggct ggtcagcagc tcgacttcaa agacgagttg
     1321 gtcgccgggg atgacttggc gtttgaaacg ggcttcgtct atgccggcga agaagaagaa
     1381 ttcgttttct ttgcgcccgc cttcgctcaa aatcgccaac gtgccgcacg cctgcgccat
     1441 cgcttcgatg atgagtacgc cgggcatcac gggcaggtcg gggaaatggc cttggaactg
     1501 gggttcgttt atggtgacgt ttttaatcgc ggtcagggtt ttcatcggct cgaaggcggt
     1561 gatgcggtcg agctggagaa acggatagcg gtgggggatg agtttttgga tgtctttggc
     1621 ttcgatgggg agttgtacgt ccatgtctgt cgtattcctt gaataaagtc ggtttggtta
     1681 tttgctgtct tgaccggtat ctgaaagctg ctgctctagt gttttgagcc gtttgttcat
     1741 ttcgcttaag cggtggatgt aaacagcgtt gcgcgcccat tctttatggg tggacatcgg
     1801 gaagatgccg gcgaggtgtt tgccgctttc ggtaatgctg tgggtgacgg acgtgccgcc
     1861 gccgatggtg gttttgtcgg cgatttcgat gtgtccgacc gtaccgacgc cgccgccgat
     1921 gatgcagtag ctgcctatgg ttacgctgcc tgagatgccg gttttggcgg cgatgacggt
     1981 gtgcgaaccg attttgcagt tgtgtccgat ttggacttgg ttgtcgattt tggtgccgtt
     2041 gccgacggtg gtgtcgctca tcgcgccgcg gtcgatgttg gtgttcgagc cgatttccac
     2101 gtcgtcgccc agcgttaccg cgccggtttg cgggatttta aaccatgaat cgccggcaaa
     2161 agcgagtccg aaaccgtccg cgccgatgac cgcgccgctg tggatttcga cgcgtctgcc
     2221 cagtgtgcag ccgtaataaa cgacggcgtt gggatgcagg acgacttcgt cgcccagttt
     2281 gcaatcgtgt tggacgacgg cgtttgccaa gatgcggcag ccttcgccga gcacggtgtt
     2341 tgcgccgatg tagacgttcg cgccgatttc gcagctggtg ggaacggtcg cgcccggttc
     2401 gacgacggcg gtcggatgga tgccgccgcg cgctttgacg acgggtgaaa acaggcgggc
     2461 gactttggcg aaatagagat aggggtcgtc ggcgacaatc aggttgcgcc cttcaaatcc
     2521 gtctgccgct ttggcggaaa cgatgaccgc gcccgcgctg ctgtcgtgga cttcggcttt
     2581 gtatttcgga ttggcaagga agctgatgtg ttccgcctgc gcgtctgcga gcgggcgcac
     2641 ggcggtaacg gaaatgtcct cgccgcgcca ttcgccgccg agccgcgcgg tgatttggga
     2701 cagggtgtag gtggccggaa tcatggtttt cctgttcggt atgccgtctg aaagggtcag
     2761 cgggcgttca tttctttaat gacgctgtcg gtaacgtcgt attgggtgtt gacgtaaatc
     2821 acgttctgca aaatgacatc gtaaccttcc tgtttggcga ttttgacgat gacgcggttg
     2881 gcgttttgct ggagggaggc aaactcttcg ttgcggcgga ggttgtagtc ttcttcaaac
     2941 tgcgcctgtt ttttgcggaa cgctgcgacc agcccgcgcc atttttcttc ggcttgcgcc
     3001 ttttttgcgt ttctgagttt gccttcggca agctgccttt ccaaatccaa accttcgcgt
     3061 tgcagttttt gcaattcgtc ctgacgggcg gaaaattcgc tgtccagcgt tttttgaatc
     3121 ttgcgcgcct gcttggattc gaggtagatg cgctcggtgt tgataaagcc gattttttgg
     3181 aaggtgtcgg cgtgcgcgcc tgcggtgcag cacaaaccga tcagagccgc ggcaaacgcg
     3241 cgggtcaaac gggtcatggt aaaactcctt cgaatgttgc cgcgaaatgc cgtctgaagg
     3301 gcttcagacg gcatttgcgg gattagaacg tcgtgccgag ttggaattgg aagcgttgga
     3361 tttcgtcttc cggttttttc ttcagcgggt aggcgtagct gaatttcatc gggcctaaag
     3421 gcgagagcca ggtaaccgcg ccgccggcgg aatagcgcaa ttcgttggta aaggtggatt
     3481 tatgggtatt gccggcgccg taaatgtttt gaaccctgcc gccggtcgcg gaactgctgt
     3541 tgtcgtcgta ggttttgccg tcccacacgc tgcctgcgtc ggcaaacagg ctcaggcgga
     3601 cggtgcgcgc gtctttcgcg ccgggcatcg ggaagagcag ctcggcggag acgttggctt
     3661 ttttgttgcc gccgtagctg atcttgtcgc cgtattcgtc atagactttc ggaccgagtg
     3721 tgccgctttc gtaacctcgt accgaaccca ggccgccgcc gtagaagttt tcaaagaagg
     3781 ggatttcttt ggttctgccg tagccgcctg caatgccgac ttcgccgccg agcatcagcg
     3841 tgaaggtttt gcttaagggg aagaaccagg tttggttgtg ggtggcggag tagtattgca
     3901 gtttgctgcc gggcagggcg atttcggcgt tcacgcccgt caggtagccg cgcgtcggcc
     3961 ataacgcgct gtcggttttg ttgcgccccc agccgacggt acctttgtac agccagcctt
     4021 tgaagctgcc gtctgtgccg ttggttttgc cgtattgttt gataaagtcg gcatagcgtt
     4081 tgggtgcttt gttgtaggtg ttgacggtca ggtgttctgc cgccaaaccg aaattcacgc
     4141 ggtcgtattc ggtaacaggc acgctcatgc ggatgcctgc gcctgccgtg gtggttttat
     4201 attgtttgat gctggtcgat gctttgcgcg ggtcgaaggc ttttccgtaa acatcgtagc
     4261 ccaggctgac cccgtctgcc gtgaagtacg ggtcggtaaa cgacagcgag ccgttgagcg
     4321 tggttttgct tcgtgaggcg cgcagggcgg ccgacttgcc cgtaccgaac aggttgtctt
     4381 gggaaacgcc tgcggacatg accaggccgg tatcctgtac ccagcccgcg ctcaagtcga
     4441 gcgagccggt ggaacgttcg gtcaggctca tgttcaaatc gactttgtcg ggtgtgccgg
     4501 caagcgggac ggcgtcaaac tggacattgt cgaagtagcc taaaagctcg acgcgctctt
     4561 tggagcgttg cagcttggag gtgtcgtaag gcgcggattc catttggcgc aattcgcggc
     4621 gcacgacttc gtcgcgggtt ttgttgttgc cggtgatgtg gatttcgttg acgtagattt
     4681 tccggcccgg ttcgatgtgc aggacgaaat cgacggtttt ggtttcggcg tttggcagcg
     4741 gctgtacgct gatttcgctg tatgcgtagc ctgccgagcc catgcggttc tgaatctcac
     4801 ccaaaacggc ggtcatctgc tggcgttcgt accatttgcc gggcttcatg gtcagcagct
     4861 tttccagttc ggctttgggg acttcgttgg tgtcgccttc gatggagact ttgccccaac
     4921 ggaaacgtcc gccttcgtgg acggtgattt tgatggtctg cttggttttg tcttcgttgg
     4981 tttggatgtc ggtatcgagg atgcggaaat cgaagtagcc gttgttctgg tagaagtcgg
     5041 ttactttttc catgtcttgg gcaaatttct gctcgttgaa ttggttgctt cgtgtcagcc
     5101 atgtccaaat gccgccttcg gtcagcgaca tctgccgcat cagtttgcgg tcggaataga
     5161 cttggttgcc ttcaaattcg atgtcggtga ttttggcgga tttgccctcg tcaatcgtga
     5221 tgtcgatgtc gacgcggttg cgggcgagtt tggttacttt gggcgtgatt tggatattga
     5281 gtttgccgcg cccgaggtat tcttctttca ggccggcgac tgcctgattg agtgtcgcct
     5341 gattaaagta ttgcgactgc gccagcccga acgattcgag gtttttctta atggcgtcgt
     5401 tttgcagcat ttttgcgccg gtgatattga gcgagccgat ggtaggacgt tcgatgacgg
     5461 tcagcaggag ctgcccgtcc gcagtttcga cgcgtacgtc gtcaaagaaa ccggtggcgt
     5521 acaggctttt gatgatggca ctgccgtgtg tgtcgttgta ggtgtcgccg actttgacgg
     5581 gcaggtagtt gaatacggtg ctcggctcgg tacgctgcaa gccttcgacg cggatgtctt
     5641 ggatggtgaa gtcggcaaat gccaaaggcg atatgcccaa catcatcagt gcggaagcaa
     5701 tctgtttcag tttcatcgta agttccttag tggtgcggaa tgcggtttca gacggcattc
     5761 cgaaacgtaa aatctaaccg agcagccggg taacgtcgtt gaagaaggcg accgccatca
     5821 tcagcatcat gagggcaagc ccgaagcgca aaccgatgtt ttggacgcgt tcgcccaaag
     5881 gtttgccgcg tatccattcg gcagtataaa acacgaggtg gccgccgtcc aaaacgggga
     5941 cgggcagcag gttcagcacg ccgaggctga tgctgaccag tgccaaaaat tccaaataac
     6001 tttgcaagcc gagttcggcg gactgtccgg caatatcggc aatggtcagc ggaccggaaa
     6061 tatggctgac ggaggcgttg ccgctgatta gtttgccgaa aaatttgagg gttgtccacg
     6121 agtgggaaac ggttttttcc cagcccatgc cgaatgcgcg gacaacagac ggacggtagc
     6181 tgcggcggat ttgcgcgtcc cacgccctgt ccggctgcgg acggaggccg acgcgcccga
     6241 tcagggtatg gtcgggctgt tcgacagtat cggggcggat gtcggcggta tgggtttgtc
     6301 cggcgcgttc gtaggttaag gcaattttcc tgcccgggct ttggcgggtc aggtttgccc
     6361 attcttgcca tgaggcgatg ggtttgccgt cggcggcagt cagcctgtcg cccggtttca
     6421 ggcctgcttt ttcggcgggg ctgccttttt ccacgccgcc ggcaacggtt gtgattttaa
     6481 agggcatcag tccgatgtag ccttggtttt tggcgatttt accggcttct ggcgtgcctg
     6541 cggcatcgat ggtgcggacg gtttgcgcgc ccgatgccgt ctgaacgccg acggcgactt
     6601 tgccggcttc gaggttgagg acgatttcgg tttgcgcgct gccccaatct gcaacgggtg
     6661 tgccgttgac ggattgtatt ttgtcgccgc tttggaagcc ggcacgggcg gcaatggtgt
     6721 cgggttcgac tgtgccgacg taggggcgca gttcggttac gccgaaggaa aagctcagtc
     6781 cgtacagcaa aaccgccagt gcgaggttgg tcagtgggcc ggcggcgacg atggcgatgc
     6841 gcttggcggg gtgttgtttg tcaaaagcgt agggtaaatc ggcttctgat acttcgcctt
     6901 cgcgcgtgtc gaccattttg acgtaaccgc ccaacggaat cggggcgagg caccattcgg
     6961 tgtcgccgcg ctttcgggtg aaaaacggtt tgccgaagcc gacggaaaag cgtacgactt
     7021 tgacgccgca caatctggca acgatgtagt gtccgaactc gtgcaggctg accaaaatca
     7081 ggatggcgaa gataaaagct agaagggtgt gcaaatggtt ttcctttgat aacggtgttc
     7141 agacggcatc agcgcagtgt gccgataaat gctcgcgctt gtgcgcgtgt ccgggcatct
     7201 tgcgccaaca gcccttctat atcgcctatg ccgtctgaaa agtcttgtgc gagacaatgg
     7261 gcgacggttt tggcaatgtc ggtaaactta atctgtccgt ccaaaaaggc ggcgacggcg
     7321 gcttcgttgg cggcgttcaa tacgcagggc gcggctccgc ctgcgttcat ggcttcatag
     7381 gcgagcttca ggcaggggaa gcggtcaaag tcgggctttt ggaaggtcag cgcggacaat
     7441 gcgtcgaaat ccaggtcgcc gacacccgaa tcgatgcgct cgggcaaacc caaacaataa
     7501 gcaatgggcg tacgcatatc gggattgccc agttgcgcca acacggagcc gtcgcggtag
     7561 cgcaccatgc tgtgtatcac ggattgcgga tggatgacga cttcgagctt gtcaggcgga
     7621 cagttgaaca gccaatgcgc ttcaatcagc tccaaacctt tgttcatcat ggtggcggaa
     7681 tcgacggaga ttttgcgccc catgctccaa ttggggtgtt tgaccgcttg ggcgggcgta
     7741 atgctgtcga acgtgtttaa atcggcggtc agaaacgggc cgccggaagc ggtcaggata
     7801 atcgaagcga tgccgtgttc gttcagacgg ccggcgtaat cgcgcggcaa aacttggaaa
     7861 acggcgttgt gttcgctgtc gacgggcagc actgccgcgc cgtttgcacg ggcggtttcc
     7921 ataaacaacg cgccggaaac caccagcgtc tctttgttcg ccagataaat ggttttgcct
     7981 ttttgcgccg ctgcgagcgc ggaaggcagc cccactgccc cgacgatggc gcacatgaca
     8041 ccgctgactt cgtcggcaga cgcaacgtca accaatgcct gcgcgccgtg taaaacctgc
     8101 gtcgccgtgc cgtcgcgttt caacagggct tcaagccggg cggcgtgttc cgcatcggca
     8161 acgacggcat attcggggcg gaacgtttga cattgagccg ccaatttctc gacctgctta
     8221 tgccctgcca gcgcgaatac gcggaatttt tcggggtggc gggagacaac gtccagcgtg
     8281 ctttcgccta tgctgccggt actgcctaat atggtcagga cttgtggtgt cataatgagg
     8341 ataactttat accggatgcc gtctgaagcg ttttcagacg gcatagaatc aatttaaaac
     8401 cgacatcatc gccgcataga cgctgataac ggcaatcagg ctgtcggtac ggtcgaacac
     8461 gccgccgtgt ccggacagca ggttgctgct gtctttaatg cccgccgcgc gcttgagcca
     8521 gctttccaac aggtcgccgc atacgctgac aacggtcagc accaaaccga ttaacacggt
     8581 atcgaaccag cctgtatcga atgccagcca gccggcactt cgtacggcgg tcatgtacac
     8641 tgccacgcaa accgcgccgc cgattgcacc ttcccagctt ttgccggggc tgattgccgg
     8701 tgcgattttg tgtttgccga acgccttgcc gctgaaatac gcgcaaatat cggcaaccca
     8761 caccaaaccc atcacggcga gcagcggcag ggcatcatcg ggatgcgggc gcagggatac
     8821 gagcgcgaac caaaacggca tgaccagaag ccagccgacg gcataaacct gccaaccgcc
     8881 gttgagcctc catttgaatc tcaaccataa aggcataacg gcgagccaaa atgccaaaac
     8941 aacataccaa accaaattag gcagcatcca gccgcccgca taggcaacca cgccgaaaac
     9001 caaggttgcg gcgaggtaat ggttggtttt aattttgcac aaaccgccca tacgggcata
     9061 ttcccacaag gcaatcaggg caatcagtcc gcaaaatgca gcccacaacc attgcggcgc
     9121 gtaaaacagc atgcccagca tcagcggcag cagccacatg gcggttatta cccgttgttt
     9181 cagcatattc agttcctttg ctgttcgata ggcagttgct cggaggtgcg tccgaaccgc
     9241 cgttcgcgtt tttggaacga agcgacggca tcgtccaaag ccttgccgtc aaaatcgggc
     9301 cacaaaatat cggtgaaata cagttcggca taagccattt gccagagcag gaaattgctg
     9361 atgcgcgttt cgccgccggt gcggatgaac aaatccggct cgggcgcatc gcccagcatc
     9421 aagtgtttcg ccagcgtgtc ttccgtaatc tcggatacgc ctttggcaat cagtttgttt
     9481 gccgcctgca aaatgtccca tctgccgccg taatcggcgg caatgctcag ggtcagaccg
     9541 gtattgtttg ccgtcaacgc ctccgcctct tcgatgccct tcaggatttg acggctgaag
     9601 cgttcgcggc tgcccagtat tttcaggcgc atattgtttt cgtgcaggcg gcgtacctgt
     9661 ttttgcaaag cctgtaaaaa cagccccatc aggaacgaaa cttcgtcttc ggggcggcgc
     9721 cagttttcgg ttgaaaaggc aaacacggtc agatattgca cacccagttt ggcgcaatgc
     9781 ttcaccatat tttccaatgc gtccaaaccg cgtttgtgtc ccattatgcg cgggaggaaa
     9841 cgttttttcg cccaacggcc gttgccgtcc ataatcacgg cgatatgctt gggaatggcg
     9901 gtgtgttcca aaacggcctg cgtgctgctt ttcatgtctg cctttcgcgg ttcggcattc
     9961 aaatgccgtc tgaacgccga accgtgcagg ttaaattgcc atcaaatctt cttctttggt
    10021 agtcaggagt ttgtcggctt cggtaatgta tttgtcggtc agtttttgaa ccgcttcttc
    10081 gccgcgacgt gcctcgtctt cggaaatttc tttgtctttg aggagttttt tgatgtggtc
    10141 gttggcatcg cggcgcacgt tgcggatgga gacgcggcct tcttccgctt cgccgcgtac
    10201 gactttaatc aggtctttgc ggcgttcttc ggtcagcatg ggcatcggca cgcggatcag
    10261 gtcgccgaca gctgccgggt tcagccccaa gtttgaatcg cggatggctt tctcgacttt
    10321 ggcagccata ttgccctcaa acggtttcac gccgatggtg cgcgcgtcca gaagcgttac
    10381 gttggcaact tggctgacgg ggaccatgct gccccagtat tcgacttcca cttggtcgag
    10441 caggccggta tgcgcgcggc cggtacgcac tttcgccaga ttttctttca gtacttcgac
    10501 cgaacgctgc atcttgcctt cggctgtttt ttgaatatcg ttgatcatat tgttctttcg
    10561 gtgggataag gtgggcggga gaccgtctga acgcgtttca agccgttcag acggcataaa
    10621 gaccgttaac cgcgaatagt accgttattc gggcataacg acaaggcagg cggattggag
    10681 atgccgtctg aagcggcagg cgtttcagac ggcatcgtgt ccgaccgtca gccgtgttcc
    10741 cgtgtttcaa gcaggctttg gcgcaggtgt tggcgttcgt gggcatccag ccatttgcgg
    10801 cgggtgcgtt gcagcaggat gacgagggcg gaaatttcct gacgcatatt ggtgctgagc
    10861 cagaggaagc cctgccattg gtagtggagg tgttcggcga gggcttccag ttcggggttg
    10921 atggcggtgt cgatgcggat gcggcgggcg tgtctgccgt tgataagggc gacggtttgt
    10981 tgcaggtcgg tttggagcag tgtgaagtgg cggtcgagca gccggatttc gctgccgttg
    11041 agtttgggag attgcagctt ggcggcagtg gtcaggagca gctcggtggt gttgacaatt
    11101 ttacggtggg cgtgctgcat ggcttccatc atggcggggc tgatgcggct ttcgcccgat
    11161 gtggcggcga ggtggctgcg gcttttgacc atgcgtgcgt tgatttggcg cattttaacc
    11221 atattctgct ccaaacgttc gcgcgtcata cgcctgccgt tgctgatttc ggcaatcatt
    11281 ttgctgcagt cggtcaggtt gtcggcaagc atgaaacgcc acatcagtgt ggatttcagc
    11341 ggcagcagtt tggcggcggc gatggcgatg gccgcgccga tgaggacgtt catcgcgcgc
    11401 atcaggccgc tgtcgaacca ttcgctgccg ttgtcgccga tgagcatgca catcgtcagc
    11461 cccgccagca tagggacgta gccgtttttg ccgaccgccg cccagccggc cagtgcgctt
    11521 gccgtgccga cggtgaggta gaagaggagg ttgccgtgga aataatgctg gttcagccat
    11581 aaaacgccca aacccgcgcc cagcccgatg accgtgccga gcatacgttc caccgccttg
    11641 gagtaaatcg ccccttgaaa ctggagcatg ccgaggacga cgaagacggt catccctatc
    11701 cactcgccgt gttggaggtg gagcagccgg gcggtggcgg tggcgaacag gacggctccg
    11761 ccgagccgca cggcgtggat gaggcggcgg tagcggtaac gttcgtagga gttgagccag
    11821 cggctgacga ggcggttgcg ttgcgaggtg ttcatatcgg ttgtgccgtc tgaagcggaa
    11881 atgtgaaaaa gcacaggctt cccgagggag ggtctgtgct tggtattggt gccggagaag
    11941 ggaatcgaac ccccgacctt cgcgttacga atgcgctgct ctaccgactg agctacaccg
    12001 gcgttttttc gtcatgatat atatgaacgg ttgtttgtgc aacttttcgg gcgggcggca
    12061 aggcagtgcg cggtatagtg
//
LOCUS       DAXHPV010000046        11699 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.046, whole genome shotgun sequence.
ACCESSION   DAXHPV010000046 DAXHPV010000000
VERSION     DAXHPV010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11699)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11699)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11699
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.046"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(308..730)
                     /locus_tag="ACFM6C_000942"
     CDS             complement(308..730)
                     /locus_tag="ACFM6C_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HFC6158420.1"
                     /translation="MQVTSKWIDGMCFVGTTESGHSVVMEGSAAEGAAKRGPSPLEML
                     LLGVAGCSSIDVVMIAEKQRQKVTDCRATVTAKRADDAPRVFTEIHIHFKVFGHDLKE
                     SAIERAVQMSAEKYCSASIMLGKAAKITHSFEIAGADK"
     gene            complement(848..1519)
                     /locus_tag="ACFM6C_000943"
     CDS             complement(848..1519)
                     /locus_tag="ACFM6C_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HFC6158421.1"
                     /translation="MMKTFKNIFSAAILSAALPCAYAAGLPQSAVLHYSGSYGIPATM
                     TFERSGNAYKIVSTIKVPLYNIRFESGGTVVGNTLHPTYYRDIRRGKLYAEAKFADGS
                     VTYGKAGESKTEQSPKAMDLFTLAWQLAANDAKLPPGLKITNGKKLYSVGGLNKAGTG
                     KYSIGGVETEVVKYRVRRGDDAVMYFFAPSLNNIPAQIGYTDDGKTYTLKLKSVQING
                     QSAKP"
     gene            complement(1535..2161)
                     /gene="purN"
                     /locus_tag="ACFM6C_000944"
     CDS             complement(1535..2161)
                     /gene="purN"
                     /locus_tag="ACFM6C_000944"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HFC6158422.1"
                     /translation="MKNIVILISGRGSNMQAIVNAAIPNVRIAAVLSNSETAAGLQWA
                     AERGIPTDRLNHKNFTSRLAFDTAMMEKIDAYQPDLVVLAGFMRILTPEFCAHYEGRL
                     MNIHPSILPSFTGLHTHERALEAGCRVAGCTIHFVTAELDCGPIVSQGIVPILDGDTA
                     DDIAARVLAVEHKLYPKAVADFAAGRLIIEGNRVRNSENADAARFLTA"
     gene            complement(2268..3086)
                     /locus_tag="ACFM6C_000945"
     CDS             complement(2268..3086)
                     /locus_tag="ACFM6C_000945"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HFC6158423.1"
                     /translation="MNTIFKISALTLSAALALSACGKKEAAPASASEPAAASSAQGDT
                     SSIGSTMQQASYAMGVDIGRSLKQMKEQGAEIDLKVFTEAMQAVYDGKEIKMTEEQAQ
                     EVMMKFLQEQQAKAVEKHKADAKANKEKGEAFLKENAAKDGVKTTASGLQYKITKQGE
                     GKQPTKDDIVTVEYEGRLIDGTVFDSSKANGGTVTFPLSQVIPGWTEGVQLLKEGGEA
                     TFYIPSNLAYREQGAGDKIGPNATLVFDVKLVKIGAPENAPAKQPAQVDIKKVN"
     gene            complement(3345..3785)
                     /locus_tag="ACFM6C_000946"
     CDS             complement(3345..3785)
                     /locus_tag="ACFM6C_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HFC6158424.1"
                     /translation="MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQEL
                     DKMLWQYEAESFIPHEIWETEEAMPSETSVLLACGGNLPRIPEGMTVLNLSDGFWNTA
                     PVLPARVLEIVGNSLEDLADARERFTAYRRSGFAIEHHGMEGKA"
     gene            complement(3848..5254)
                     /locus_tag="ACFM6C_000947"
     CDS             complement(3848..5254)
                     /locus_tag="ACFM6C_000947"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0019538 - protein metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HFC6158425.1"
                     /translation="MEFSTKTEILQEQQAGAQLFVCTEEAQLNHPTALALLSSLEEGQ
                     NFADTKIPTDNGLQAIAVCRLKSTDRAALNKVAAEAAKWAQNQETVNVDIHAFDEAQA
                     AAVAEAFAIAFGNAAYRFDRYKKEAKPAKFETAVFHSAHEAAVKEALRVAEAQVYGQS
                     LCRDLGNAAPNECTPEFLARTAKAEAEKLGAHAKIIEKDYIKENMGSFWSVAKGSVED
                     PYLVELSYFGAADKEAAPVVLVGKGITFDTGGISLKPGLNMDEMKFDMCGAATVISTF
                     CAAVKLQLPINLIAVVATCENMPSGAANKPGDVVKSMKGLTIEVLNTDAEGRLILCDA
                     LTYAEQFKPKAVIDVATLTGACIVALGHDVSGVMGNNQDLIDSLLAASRNVDDKAWQL
                     PLFETYKDQLKSNFADIPNIGTPGAGTITAATFLSYFTEDYPWAHLDIAGTAWKSGAE
                     KGATGRPVPLLLNYLRNL"
     gene            5425..6540
                     /gene="lptF"
                     /locus_tag="ACFM6C_000948"
     CDS             5425..6540
                     /gene="lptF"
                     /locus_tag="ACFM6C_000948"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HFC6158426.1"
                     /translation="MIYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVA
                     IDAVLALVGFWVIGMTPLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPV
                     MQFAVPFAVLVAVMQLWVIPWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVY
                     FVETFDTESGIMKNLFLREQDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPG
                     RADYNQVSFQKLNLIISTTPKLIDPVSHRRTIPTAQLIGSSNPQHQAELMWRISLTVS
                     VLLLCLLAVPLSYFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLP
                     MHIIMFAVALILLRVRSMPSQPFWQAVGKSLTLKGGK"
     gene            6537..7607
                     /gene="lptG"
                     /locus_tag="ACFM6C_000949"
     CDS             6537..7607
                     /gene="lptG"
                     /locus_tag="ACFM6C_000949"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010358669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HFC6158427.1"
                     /translation="MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSY
                     GIWEMLGYTALKMPARAYELIPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLI
                     LSQFGFIFAIATVALGEWVAPTLSQKAENIKAAAINGKISTGNTGLWLKEKNSIINVR
                     EMLPDHTLLGIKIWARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSI
                     AAEENWPISVKRNLMDVLLVKPDQMSVGELTTYIRHLQNNSQNTRIYAIAWWRKLVYP
                     AAAWVMALVAFAFTPQTTRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGIPPFLA
                     GALPTIAFALLAVWLIRKQEKR"
     gene            7907..10492
                     /gene="acnB"
                     /locus_tag="ACFM6C_000950"
     CDS             7907..10492
                     /gene="acnB"
                     /locus_tag="ACFM6C_000950"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003679951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0003994 - aconitate hydratase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HFC6158428.1"
                     /translation="MLEAYRKAAAERAALGIPALPLTAQQTADLVELLKSPPAGEGEF
                     LVELLAHRVPPGVDDAAKVKASFLAAVAEGSASSPLISPEYATELLGTMLGGYNIHAL
                     IELLDDDKLAPIAAKGLKHTLLMFDSFHDVQEKAEKGNKYAQEVLQSWADAEWFASRA
                     KVPEKITVTVFKVDGETNTDDLSPAPDAWSRPDIPLHALAMLKNPRDGITPDKPGEVG
                     PIKLLEELKAKGHPVAYVGDVVGTGSSRKSATNSVIWHTGEDIPFVPNKRFGGVCLGG
                     KIAPIFFNTQEDSGALPIEVDVSALKMGDVVDILPYEGKIVKNGETVAEFELKSQVLL
                     DEVQAGGRINLIIGRGLTAKAREALKLPASTAFRLPQAPAESKAGFTLAQKMVGRACG
                     LPEGQGVRPGTYCEPRMTTVGSQDTTGPMTRDELKDLACLGFSADMVMQSFCHTAAYP
                     KPVDVKTHKELPAFISTRGGVSLRPGDGVIHSWLNRLLLPDTVGTGGDSHTRFPIGIS
                     FPAGSGLVAFAAATGVMPLDMPESVLVRFSGKLQPGVTLRDLVNAIPLYAIKQGLLTV
                     AKAGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTVKLNKEPIIEYMKSN
                     VVLMKNMIANGYQDPRTLERRIKAMEKWLANPELLEADKDAEYAAVIEINMDDIKEPI
                     IACPNDPDDVCFMSERSGTKIDEVFIGSCMTNIGHFRAASKLLEGKADTPVRLWIAPP
                     TKMDAKQLSDEGHYGVLGRAGARMEMPGCSLCMGNQAQVREGATVMSTSTRNFPNRLG
                     KNTFVYLGSAELAAICSKLGKIPTVEEYQANIGIINEQGDKIYRYMNFNEIDSYNEVA
                     ETVNV"
     gene            10634..11629
                     /locus_tag="ACFM6C_000951"
     CDS             10634..11629
                     /locus_tag="ACFM6C_000951"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006591 - ornithine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HFC6158429.1"
                     /translation="MNLKNRHFLKLLDFTPEEITAYLDLAAELKAAKKAGREIQRMKG
                     KNIALIFEKTSTRTRCAFEVAARDQGAGVTYLEPSASQIGHKESIKDTARVLGRMYDA
                     IEYRGFGQEVVEELAKYAGVPVFNGLTNEFHPTQMLADALTMREHSGKPLNQTAFAYV
                     GDARYNMGNSLLILGAKLGMDVRIGAPQSLWPSEGIIAAAHAAAKETGAKITLTENAH
                     EAVKNVDFIHTDVWVSMGEPKEVWQERIDLLKDYRVTPELMAASGNPQVKFMHCLPAF
                     HNRETKVGEWIYETFGLNGVEVTEEIFESPASIVFDQAENRMHTIKAVMVAALGD"
BASE COUNT         2675 a         3237 c         3051 g         2736 t
ORIGIN      
        1 aataaattaa tatatggctt aaaataacgg gatgcccgcc ttccgcccgc ccgcagaagc
       61 aggcgggtat cattttaaaa cgcggcattt aaaatttgac cgaaaattgt tgacaatccg
      121 gaatcaagtc tgcacaatac cccgacaagt ccaagtatta taaaggctga ataaagagga
      181 aacagcaggc agatatattc gggaggtgca gtccgaatat atctgctttt ttatgcgcct
      241 ccggattgcc tgccgcacct ttcccttcag acggcatcag ccgtttcccc ataatgccgc
      301 ccgatgccta tttatctgcc ccggcaattt caaaactgtg ggtaatcttt gccgctttgc
      361 ccaacataat cgaagccgaa cagtattttt cggcagacat ctgaacggcg cgctcaatgg
      421 ccgattcttt caaatcatgc ccgaatactt tgaaatggat gtggatttcg gtaaacacgc
      481 gcggcgcatc gtccgcccgt ttcgccgtaa ccgtcgcacg gcagtcagtc actttctgac
      541 gctgtttttc ggcaatcatc accacatcga tgctcgaaca gcccgccacg cccaacagca
      601 gcatttccaa agggctgggc ccgcgcttgg ccgcaccttc tgccgccgaa ccctccataa
      661 cgacgctgtg cccgctttcc gtcgtgccga caaagcacat tccgtctatc cattttgatg
      721 taacctgcat ggtgtcattc ctgaaaatag cgttaaaacc gctttgcata tggcgttatt
      781 gtaaacaatt tcaagcggct tatgcagaaa tatggacaaa acggcaaaaa aacgcctgaa
      841 aaccgattta cggtttggcg gactggccat tgatctgcac cgatttgagt ttcagcgtat
      901 aggttttgcc gtcgtcggta tagccgattt gtgccggaat attgttcagg gacggtgcga
      961 agaaatacat taccgcatcg tcgccgcgcc gcacccgata tttgacgact tcggtttcca
     1021 cgccgcctat gctgtatttt cctgtacccg ccttattcaa accgccgacg gaataaagtt
     1081 ttttgccgtt ggtgattttc agccccggtg ggagtttcgc gtcatttgcc gccaactgcc
     1141 aggcaagcgt gaacaaatcc atagccttgg ggctttgctc ggttttgctc tcgcccgctt
     1201 tgccgtaagt tacgctgccg tcggcgaatt tggcttccgc atacagtttg cccctgcgta
     1261 tgtctctata gtaggtaggg tgcagggtat tgccgacaac cgtaccgccg gactcgaaac
     1321 ggatattgta tagcggcact ttaatcgtcg aaacgatttt gtaagcattg ccgctgcgtt
     1381 caaatgtcat cgtggcggga atgccgtagc tgccggaata gtgcagcacg gcggattggg
     1441 gcagccctgc cgcatacgcg cacggcaggg cggcggacaa aatggcggcg gaaaatatat
     1501 ttttaaaagt cttcatcatt tgctcccgcc cggtttacgc cgtcaggaaa cgggcggcat
     1561 cggcgttttc cgaatttctg acgcggtttc cctcgataat caggcggccg gcggcaaaat
     1621 cggcaacggc tttcggatag agtttgtgtt cgacagccaa aacccgggcg gcaatatcgt
     1681 ctgccgtatc accatcaagt atcggcacaa tcccttgcga tacaatcggg ccgcaatcca
     1741 gctcggccgt aacaaagtga atcgtacagc ctgcaacgcg gcaacccgct tccaaagcgc
     1801 gttcgtgcgt atgaagtccg gtaaacgagg gaaggatgga cgggtggatg ttcatcagcc
     1861 tgccttcgta atgggcgcaa aactcggggg tcagaatccg cataaaacct gccaaaacca
     1921 ccaagtcggg ttgatatgcg tcgatttttt ccatcatggc ggtatcgaag gcaagccggg
     1981 atgtaaagtt tttatgattc agtctatcgg tcgggatgcc gcgttcggcc gcccattgca
     2041 aaccggcagc cgtttcgctg ttgctcaaca cggcggcaat gcggacgttg ggaatagcgg
     2101 cattgacgat tgcctgcatg ttgctgccgc gcccggaaat caggatgacg atgtttttca
     2161 taatggtgcg cttttgaaag ggatgccgtc tgaaccgctg tttggtggtt tcagacggca
     2221 tttgccgtaa aaatgcccga aaacctgttt cgggcatgga ttcggactta atttactttt
     2281 ttgatgtcga cttgagccgg ctgcttggcg ggcgcgtttt cgggtgcgcc gattttgacc
     2341 agtttcacat caaataccaa agtggcgttc gggccgattt tgtcgcccgc accctgttcg
     2401 cggtaggcaa ggttggacgg gatgtagaac gtggcttcgc cgccttcttt cagaagttgt
     2461 acgccttcgg tccaacccgg aatcacttgg ctcaaaggga aggtgaccgt gccgccgttg
     2521 gctttgctgc tgtcgaatac cgtaccgtca atcaggcggc cttcgtattc cacggtaacg
     2581 atgtcgtctt tggtcggctg tttgccttca ccctgtttgg tgattttgta ttgcaggccg
     2641 gaagcagtgg tcttcacgcc gtctttggcg gcattttctt tcagaaaggc ttcgcctttt
     2701 tctttattgg ccttcgcgtc cgccttgtgt ttttctacgg ctttagcctg ttgttcctga
     2761 aggaatttca tcatgacttc ctgagcctgc tcttcggtca ttttgatttc tttgccgtca
     2821 tacactgcct gcatggcttc ggtaaagact ttcaaatcga tttccgcgcc ctgttccttc
     2881 atttgcttca gggagcgtcc gatgtccacg cccatcgcat agcttgcctg ctgcatcgtg
     2941 ctgccgatcg aagaggtgtc gccctgcgcg gaagaagcgg cggcaggttc ggatgcagat
     3001 gcgggggcgg cttctttttt gccgcaggcg gaaagtgcca aagcggcgga aagggtcagt
     3061 gcgctgattt tgaaaatggt gttcatgatg gatcttcgct gtcgataagg tcggaaaaac
     3121 gggattatag ccgagtttga atgtttcaac acacaggatg acacataaag cgtcaatcgt
     3181 gtgttgccct gttttggaag ggattgaacc ttccaaaata agttttgatt ctaccgcccc
     3241 gagggacaga tgtccaagtg gcggggttca accgataagg aaattttaat caaatagaat
     3301 caagcctgtt taaattttgt aaatgcggca tttcagacgg cattttatgc cttgccctcc
     3361 atgccgtgat gttcgatggc aaaaccgctt cggcggtagg cggtaaagcg ttcgcgcgcg
     3421 tcggcgagat cttccaagct gttgccgacg atttccaaaa cgcgcgcggg caagaccgga
     3481 gcggtgttcc aaaaaccgtc ggacaggttc aaaacggtca tgccttcggg aattcggggc
     3541 agattgccgc cgcaggcaag caggacggat gtttcagacg gcatggcttc ttccgtttcc
     3601 caaatttcgt gcggaatgaa actctcggcc tcgtattgcc aaagcatttt gtccaattcc
     3661 tgaagctgcc cgaacgaatc ggaccacacc agtatcctgc cgccgtcccg aatcgcacgg
     3721 gcaatcaggc ggcaggtgaa aatcggaact tgggcaacgt gcgtgtaaaa ggtggctttc
     3781 ggcatattgt ttgaacattt ggcaggataa tgccgtctga aaggcttcag acggcattgt
     3841 ggcaaaatta aagattccgc agatagttca gcagcaaggg aacgggacgg ccggtcgcac
     3901 ctttttccgc accagatttc cacgccgtac ccgcgatgtc aaggtgtgcc catggatagt
     3961 cttcggtaaa gtaggatagg aatgttgcgg cggtaatcgt gcccgcgccg ggcgtgccga
     4021 tgtttggaat gtcggcaaaa ttggacttga gctggtcttt gtaggtttca aagagcggca
     4081 gttgccacgc tttgtcgtcc acgttgcggg aggcggcgag caggctgtcg atcaaatcct
     4141 gattgttgcc catcacgccg ctgacatcgt gccccaaggc gacgatgcat gcaccggtca
     4201 gggtggcgac gtcgatgacg gctttgggtt tgaactgttc ggcgtaagtg agtgcgtcgc
     4261 acaaaatcag acggccttcg gcatcggtgt tcaacacttc gatggtcagc cctttcatgc
     4321 tttttacgac gtcgcccggt ttgttggccg cgccggaagg catattttca caagtggcga
     4381 cgacggcaat caggttgatc ggcagttgca gtttgacggc ggcgcagaag gtgctgatga
     4441 cggttgccgc gccgcacata tcaaacttca tttcgtccat gttcaggccg ggtttgaggg
     4501 agatgccgcc ggtgtcgaag gtaatgccct tgccgaccaa taccacaggc gcggcttctt
     4561 tgtcggctgc accgaagtag ctcagttcga ccaaataggg atcttcgaca ctgcctttgg
     4621 cgaccgacca aaacgaaccc atgttttctt tgatgtagtc tttttcgatg attttggcgt
     4681 gcgcgcccag tttttcggct tcggctttgg cggtgcgcgc taaaaattcg ggcgtgcatt
     4741 cgttcggcgc agcattgccc aagtcgcggc agaggctttg tccgtaaacc tgtgcttcgg
     4801 cgacgcgcaa ggcttcttta acggcggctt cgtgtgcgct gtggaacacg gcggtttcaa
     4861 atttggcggg cttggcttct tttttgtagc ggtcgaaacg gtaggcggca ttgccgaacg
     4921 caatcgcaaa cgcttcggct acggcggcgg cttgcgcttc atcgaaggca tggatgtcca
     4981 cattgaccgt ttcctgattt tgcgcccatt tggcggcttc ggctgcgact ttgttcagcg
     5041 cggcgcggtc ggtgcttttc agacggcata cggcaatggc ttgcaaaccg ttgtcagtcg
     5101 ggatttttgt gtcggcaaaa ttttgacctt cttcaagcga agacaaaagg gcaagggcgg
     5161 tcggatggtt taattgcgcc tcttcggtgc agacaaataa ctgtgcgcct gcctgctgtt
     5221 cctgcaagat ttcggttttt gtgctaaatt ccacgtttat tctcctgatt gagacggttg
     5281 tcggtagttt tcggacggcc tttcgctcaa aagaccgtct gaagacggct ggcacgattg
     5341 taccccattt gaagcaccgt ctgaaacctt gcgcggacaa tccgcctgcg ccgaaccgct
     5401 taccgccccc ctgaccgcga ttctatgatt tatcaaagaa acctcatcaa agaactctct
     5461 tttaccgccg tcggcatttt cgtcgtcctc ttggcggtat tggtctccac gcaggcaatc
     5521 aacctgctcg gccgtgccgc cgacgggcgt gtcgccatcg atgccgtgtt ggcattggtc
     5581 ggcttctggg tcatcggtat gacgccgctt ttgctggtgt tgaccgcatt tatcagtacg
     5641 ttgaccgtgt tgacccgcta ctggcgcgac agcgaaatgt cggtctggct atcctgcgga
     5701 ttggcattga aacaatggat acgcccggtg atgcagtttg ccgtgccgtt tgccgttttg
     5761 gttgccgtca tgcagctttg ggtgataccg tgggcagagc tacgcagccg cgaatacgct
     5821 gaaatcctga agcagaagca ggaattgtct ttggtggagg caggcgagtt caacagtttg
     5881 ggcaagcgca acggcagggt ttattttgtc gaaaccttcg ataccgaatc cggcatcatg
     5941 aaaaacctgt tcctgcgcga acaggacaaa aacggcggcg acaacatcat cttcgccaaa
     6001 gaaggtaact tctcgctgaa cgacaacaaa cgcacgctcg aattgcgcca cggctaccgt
     6061 tacagcggca cgcccggacg cgccgactac aatcaggttt ccttccaaaa actcaacctg
     6121 attatcagca ccacgcccaa actcatcgac cccgtttccc accgccgtac cattccgacc
     6181 gcccaactga ttggcagcag caacccgcaa catcaggcgg aattgatgtg gcgcatctcg
     6241 ctgaccgtca gcgttttgtt gttgtgtctg cttgccgtgc cgctttccta tttcaacccg
     6301 cgcagcggac atacctacaa tatcttgatt gccatcggtt tgtttttaat ttaccaaaac
     6361 gggctgaccc tgctttttga agccgtggaa gacggcaaaa tccatttttg gctcggactg
     6421 ctgcctatgc acattatcat gtttgccgtt gcactcatcc tgttgcgcgt ccgcagtatg
     6481 cccagccagc ccttctggca ggcggttggc aaaagtctga cattgaaagg cggaaaatga
     6541 acctgatttc acgttacatc atccgtcaaa tggcggttat ggcggtttac gcgctccttg
     6601 ccttcctcgc tttgtacagc ttttttgaaa tcctgtacga aaccggcaac ctcggcaaag
     6661 gcagttacgg catatgggaa atgctgggct acaccgccct caaaatgccc gcccgcgcct
     6721 acgaactgat tcccctcgcc gtccttatcg gcggactggt ctccctcagc cagcttgccg
     6781 ccggcagcga actgaccgtc atcaaagcca gcggcatgag caccaaaaag ctgctgttga
     6841 ttctgtcgca gttcggtttt atttttgcta ttgccaccgt cgcgctcggc gaatgggttg
     6901 cgcccacact gagccaaaaa gccgaaaaca tcaaagccgc cgccatcaac ggcaaaatca
     6961 gcaccggcaa taccggcctt tggctgaaag aaaaaaacag cattatcaat gtgcgcgaaa
     7021 tgttgcccga ccatacgctt ttgggcatca aaatttgggc gcgcaacgat aaaaacgaat
     7081 tggcagaggc agtggaagcc gattccgccg ttttgaacag cgacggcagt tggcagttga
     7141 aaaacatccg ccgcagcacg cttggcgaag acaaagtcga ggtctctatt gcggctgaag
     7201 aaaactggcc gatttccgtc aaacgcaacc tgatggacgt attgctcgtc aaacccgacc
     7261 aaatgtccgt cggcgaactg accacctaca tccgccacct ccaaaacaac agccaaaaca
     7321 cccgaatcta cgccatcgca tggtggcgca aattggttta ccccgccgca gcctgggtga
     7381 tggcgctcgt cgcctttgcc tttaccccgc aaaccacccg ccacggcaat atgggcttaa
     7441 aactcttcgg cggcatctgt ctcggattgc tgttccacct tgccggacgg ctcttcgggt
     7501 ttaccagcca actctacggc atcccgccct tcctcgccgg cgcactacct accatagcct
     7561 tcgccttgct cgccgtttgg ctgatacgca aacaggaaaa acgctaaacc aatgccgtct
     7621 gccccccttc ggacggcatt ggtttttatt atcatattcc cgtagacaga tagccgttcc
     7681 ctattatagt ggattaacaa aaaccagtac ggcgttgcct cgccttgccg tactattgta
     7741 ctgtctgcgg cttcgtcgcc ttgtcctgat ttaaaataca ttacctgtca taacagttcc
     7801 atttttgtta aaactagtct atgatagcgg tacaaatatt gtttacaata tttaacgcaa
     7861 atcatttgca acccgacaaa agaaaaacag aaaaaggaac aaagagatgt tagaagccta
     7921 tcgtaaagcc gccgccgagc gcgccgccct tggtattccc gcccttcctc tgactgctca
     7981 gcaaaccgcc gatttggttg agctgctgaa aagcccgccc gcaggcgaag gcgagttctt
     8041 ggtcgaactg cttgcccacc gtgttccgcc cggtgtggac gatgccgcca aagtcaaagc
     8101 ctcattcctg gctgccgttg ccgaaggcag cgcgtccagc ccgctgatct cccccgaata
     8161 tgcgaccgaa ctcttaggta cgatgctcgg cggttacaat atccacgcct taatcgaact
     8221 cttggacgac gacaaactcg cgcccattgc cgccaaaggc ttgaaacata cgcttctgat
     8281 gttcgattcc ttccacgacg ttcaggaaaa agccgaaaaa ggcaacaaat acgcgcaaga
     8341 agttttgcaa tcttgggcag atgccgaatg gttcgcctca cgcgccaaag ttcccgaaaa
     8401 aattaccgtt accgttttca aagttgacgg cgaaaccaat acagacgacc tctcccccgc
     8461 gcccgacgcg tggagtcgtc ccgatattcc gctgcacgcg ctggccatgc tgaaaaaccc
     8521 gcgcgacggc atcacgcccg acaaaccggg cgaagtcggt ccgattaaat tgttggaaga
     8581 actcaaagcc aaaggccatc cggttgctta cgtcggcgac gtggtcggta ctggttcttc
     8641 acgcaaatcc gcgaccaact ccgtcatttg gcataccggc gaagacattc cgttcgtgcc
     8701 gaacaaacgc ttcggcggcg tatgtttggg cggcaaaatc gcgccgattt tcttcaatac
     8761 ccaagaagat tccggcgcgc tgccgattga agtcgatgta tctgctctaa aaatgggtga
     8821 tgtcgtcgat atcctgcctt atgaaggcaa aatcgtgaaa aacggcgaga ctgttgccga
     8881 gtttgaattg aaatcacaag tattgctgga cgaagtgcaa gccggcggcc gtatcaacct
     8941 gattatcggc cgaggtctga ccgccaaagc gcgcgaagcc ctgaaactgc ctgcctctac
     9001 tgcattccgc ctgccgcaag cgcctgccga aagcaaagcc ggtttcacct tggcgcaaaa
     9061 aatggtcggc cgcgcctgcg gtctgcccga aggacaaggc gtgcgtccgg gtacttactg
     9121 cgaaccgcgt atgacgacgg tcggctcgca agacacgacc ggcccgatga cccgcgacga
     9181 gttgaaagac ttggcttgtt tgggcttctc cgccgatatg gtgatgcagt ctttctgcca
     9241 caccgccgcc tatccgaaac ctgtcgatgt aaaaacccat aaagaactgc ccgcctttat
     9301 ttccacccgt ggcggcgtgt cactgcgtcc gggcgacggc gtcatccact cgtggctcaa
     9361 ccgcctgctg ctgcccgata ccgtcggcac cggcggcgac agccataccc gtttccccat
     9421 cggtatttcc ttccccgccg gctccggctt ggttgccttt gccgccgcaa cgggcgtaat
     9481 gccgctcgat atgcctgagt ctgtattggt acgcttcagc ggcaagctgc aaccgggcgt
     9541 aaccctgcgc gatttggtga acgccatccc gctgtacgca attaaacaag gtttgctgac
     9601 cgttgccaaa gccggtaaga aaaacatctt ctctggccgc atcctcgaaa tcgaaggcct
     9661 gcccgatttg aaagtggaac aagcctttga attgaccgac gcatccgccg aacgctccgc
     9721 cgccggctgt accgtgaagc tcaacaaaga gccgattatc gagtacatga aatccaacgt
     9781 cgtgttgatg aaaaacatga ttgccaacgg ctatcaagac ccgcgcactt tggaacgccg
     9841 catcaaagct atggaaaaat ggctggcaaa tcccgagttg ctcgaagcgg ataaagatgc
     9901 cgaatacgcc gccgtgattg aaatcaacat ggacgacatc aaagagccga ttatcgcctg
     9961 cccgaacgac ccggacgacg tgtgcttcat gtccgaacgc tccggcacca aaatcgacga
    10021 agtattcatc ggttcgtgta tgaccaacat cggccacttc cgcgccgcct ccaaactttt
    10081 ggaaggcaag gcagacaccc ccgtccgcct gtggattgcg ccgccgacca aaatggacgc
    10141 gaaacaattg tccgacgaag gacactacgg cgtactcgga cgtgccggcg cgcgtatgga
    10201 aatgccgggt tgctccttat gtatgggtaa tcaggcgcaa gtacgcgaag gtgcgaccgt
    10261 tatgtccacc tccacccgca acttcccgaa ccgtttgggt aaaaacacct ttgtttacct
    10321 cggttcggcg gaattggcag cgatttgctc caaactgggt aaaatcccga ccgttgaaga
    10381 atatcaagcc aatatcggca tcatcaacga acagggcgat aaaatctacc gctatatgaa
    10441 cttcaacgaa atcgacagct acaacgaagt agccgagacc gtgaacgttt aatccccgtc
    10501 atccgtatga agtaagggat tgaccgcaat gccgtctgaa caaccttcag acggcattgc
    10561 aacattccgc taacccttct ttccgcaaac gctgcaaata cggcgttcac gcccccacat
    10621 aaaggaaacg acagtgaacc tgaaaaaccg ccattttctg aaacttttag acttcacgcc
    10681 ggaagaaatc accgcctacc tcgaccttgc cgccgaattg aaagccgcca aaaaagcagg
    10741 gcgcgagatt cagcggatga aagggaaaaa catcgccctg atttttgaaa aaacctctac
    10801 tcggacgcgc tgcgcgtttg aagtcgccgc gcgcgatcaa ggcgcgggag tgacttattt
    10861 agagccgtcc gccagccaaa tcgggcataa ggaaagcatc aaagacaccg cccgcgtgtt
    10921 gggcaggatg tacgatgcca tcgaatatcg cggtttcggt caggaagttg ttgaagaatt
    10981 ggcgaaatac gcgggcgtac ccgtgttcaa cgggctgacc aacgagttcc atcccacaca
    11041 aatgcttgcc gacgcactga ctatgcgcga acacagcggc aaacctttga accaaaccgc
    11101 gtttgcctac gtcggcgacg cgcgttacaa catgggcaat tccctgctga ttttaggggc
    11161 aaaattgggg atggacgtgc gtatcggcgc accgcaaagc ctgtggccgt ctgaaggcat
    11221 tattgccgcc gcacacgccg ccgccaaaga aaccggcgca aaaattaccc tgaccgaaaa
    11281 cgcgcatgaa gccgtgaaga atgttgattt tattcatacc gatgtgtggg tcagcatggg
    11341 cgagccgaaa gaagtctggc aggaacgcat cgatttgctg aaagattacc gcgttacgcc
    11401 cgaactgatg gcggcatcgg gcaatccgca agtcaaattc atgcactgcc tgcccgcctt
    11461 ccacaaccgc gaaaccaaag tcggcgaatg gatttacgaa accttcgggc tgaacggtgt
    11521 ggaagttaca gaagaaatat tcgaaagccc cgccagcatc gtgttcgatc aggcggaaaa
    11581 ccgtatgcac acgattaaag cggtaatggt cgcggctctg ggcgactgac agaactgtgc
    11641 ctgtttaaat tcatccgcaa cacagatacc gtctgaacac gatgttcaga cggtatcca
//
LOCUS       DAXHPV010000047        11634 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.047, whole genome shotgun sequence.
ACCESSION   DAXHPV010000047 DAXHPV010000000
VERSION     DAXHPV010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11634)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11634)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11634
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.047"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            165..326
                     /locus_tag="ACFM6C_000952"
     CDS             165..326
                     /locus_tag="ACFM6C_000952"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158430.1"
                     /translation="MPAPATIRQIPLFFPNRLQVSPIRRVMPPPPFKGNARVNGFAVG
                     KAAGYRYVS"
     gene            433..957
                     /gene="nspA"
                     /locus_tag="ACFM6C_000953"
     CDS             433..957
                     /gene="nspA"
                     /locus_tag="ACFM6C_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein NspA"
                     /protein_id="HFC6158431.1"
                     /translation="MKKALATLIALALPAAALAEGASGFYVQADAAHAKASSSLGSAK
                     GFSPRISAGYRINDLRFAVDYTRYKNYKAPSTDFKLYSIGASAIYDFDTQSPVKPYLG
                     ARLSLNRASVDLGGSDNFSQTSIGLGVLAGVSYAVTPNVDLDTGYRYNYIGKVNTVKN
                     VRSGELSAGVRVKF"
     gene            1093..1482
                     /locus_tag="ACFM6C_000954"
     CDS             1093..1482
                     /locus_tag="ACFM6C_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HFC6158432.1"
                     /translation="MSKTIIHTDKAPAAIGAYSQAVRAGDTVYMSGQIPLDPATMTVV
                     GNGDFRAEARQVFQNLQAIAEAAGGTLADIVKLNAYLTDLGNFAVFNEVMAEFIAEPF
                     PARAAVGVASLPKGVQVEAEAVLVLNA"
     gene            1560..2390
                     /locus_tag="ACFM6C_000955"
     CDS             1560..2390
                     /locus_tag="ACFM6C_000955"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008803 -
                     bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="symmetrical bis(5'-nucleosyl)-tetraphosphatase"
                     /protein_id="HFC6158433.1"
                     /translation="MAHYAIGDIQGCFDELTALLGKIGFNHGTDTLWLTGDIVNRGPK
                     SLETLQFCIRHENSVQIVLGNHDLHLLAVGCGEGAPKRSDTIEPILKHPDGKKMLDWL
                     RAQPLLIREGSRVMVHAGILPQWRITKAESLAGEAEAELRGKKYVKFFSKMYGNKPAA
                     WDEGLEGYARLRFIVNAFTRMRALTFKNELDFDYKSTVKKMPPYLRPWFKAPDRQNLD
                     RTIIFGHWSSLGYTNADNVISLDTGALWGGQLTAVNLETEEITQVQAAGGIDWKSFAK
                     "
     gene            2405..3862
                     /locus_tag="ACFM6C_000956"
     CDS             2405..3862
                     /locus_tag="ACFM6C_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HFC6158434.1"
                     /translation="MHKILPIAHVLSRLGMLFSFILLIPAALSYAFSDGAYTAFATTA
                     TVTLSGSYIVRLATLRFRRELRPRDGFTLVLMLWLAFAAMAAMPMYLYFPNMGFTDAF
                     FESMSGLTTTGATVIPHVDGLAPSVNFWRHMLNWLGGMGIIVLAVAILPMLGVGGTQL
                     FKAEIPGIDKESKMSPRISQVAKKLWFGYTLITILAAACLHFAGMSWFDAVCHAMATL
                     SLGGFSTHDASIAYYNSPLIEAVIIVFTIVGGINFANHFAALNSRSLKTYWKDEECRT
                     MLLLLSGSILAAALYLWHTGYYAGFTESLRYTAFNFVSIGLANGLANTDFAQWPLLIS
                     LWMFFLANILANSGSTGGGIKTIRALVLFKFSLREMMVLLHPKAVRTVKISGKAIPDR
                     LALTVMSFIFIYFMTVVLFSFLLMASGMEFTTAFTAVIACITNAGPGLGEVGPASNYA
                     GLDVMQKWICVTAMLLGRLEIFTVFILFTPAYWKK"
     gene            complement(3903..4292)
                     /locus_tag="ACFM6C_000957"
     CDS             complement(3903..4292)
                     /locus_tag="ACFM6C_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158435.1"
                     /translation="MWKISKENCEDLGFAIVCMFYDAINLSEFKLWLDIVVRDTPIDT
                     IPLYIFDLIDFDKSIGEIYDVIGVVNYGYISNDQKNALTGIAFLRGIDVYDPPISKEK
                     ALKALEKYPEIYQRFQHFFPFVELPLL"
     gene            complement(4474..4875)
                     /locus_tag="ACFM6C_000958"
     CDS             complement(4474..4875)
                     /locus_tag="ACFM6C_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158436.1"
                     /translation="MKIKPLQFSNNNHRFYVDKICVTEQDVNILASDRNYELNIEIFI
                     DNIIHFQITDESYKVKFSEYLFENKEKNDWDRNPAINYFFEIIDDSYMDWLKEESFDF
                     FEKKYYKAYIFFFSDSVIEVISSTEPVFYSK"
     gene            complement(5292..5621)
                     /locus_tag="ACFM6C_000959"
     CDS             complement(5292..5621)
                     /locus_tag="ACFM6C_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158437.1"
                     /translation="MTDKSKTEKLISSDDKQSVIDGILDMVFNSKAYEVPWISEKLME
                     LSKNKDLDIAGLSLTCFGHLARLHSNIGDYDKVISLLHSKQDDPELQGRAEDALEDIS
                     LFLSENH"
     gene            complement(5647..5877)
                     /locus_tag="ACFM6C_000960"
     CDS             complement(5647..5877)
                     /locus_tag="ACFM6C_000960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158438.1"
                     /translation="MKSRAPTNGQAALDNSVQVKSTSPRRVGVDKANNEIVVLDKTQT
                     FNNGSAEYHGHVRSWQDLHTDQKNALKKAGLD"
     gene            complement(5938..6354)
                     /locus_tag="ACFM6C_000961"
                     /pseudo
     CDS             complement(5938..6354)
                     /locus_tag="ACFM6C_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951255.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HINT domain-containing protein"
     gene            complement(6489..7031)
                     /locus_tag="ACFM6C_000962"
     CDS             complement(6489..7031)
                     /locus_tag="ACFM6C_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="suppressor of fused domain protein"
                     /protein_id="HFC6158439.1"
                     /translation="MINHIEKYIGTISHGSKSDSGSQYKLNIAAIPSSPNRDLKTYIT
                     LELSKHDLNYKSRFEILFVCSLKYDENQIFPFLRWLAETIIENKKILLRGQVIYLPRS
                     IVDSTKMDALYVSAPFYFDDDFQVCYGEHYNIVFPLLVPLYKQEAELVEKKGWNAFEQ
                     FLLDNEVDNLSDMNRKPFVW"
     gene            complement(7158..7385)
                     /locus_tag="ACFM6C_000963"
     CDS             complement(7158..7385)
                     /locus_tag="ACFM6C_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158440.1"
                     /translation="MDIKFNTLGVILNGVNPEEKFIKIIDDQENTGGFLILLSSNDKF
                     SSFDSYDDWVENLEILKEYLQESHWIIKWVG"
     gene            complement(7444..7767)
                     /locus_tag="ACFM6C_000964"
     CDS             complement(7444..7767)
                     /locus_tag="ACFM6C_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HFC6158441.1"
                     /translation="MIVDEKSTSDVLKQYQELGFDLTKPMIIEFFIGGSQKNLQSIES
                     RLISYRQDFQISIEQNEFGEMWTCYCSVNIVPSLENILAIETTLFGIAQKNDCNYEGF
                     GSYGN"
     gene            complement(7770..8510)
                     /locus_tag="ACFM6C_000965"
                     /pseudo
     CDS             complement(7770..8510)
                     /locus_tag="ACFM6C_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798991.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HINT domain-containing protein"
     gene            complement(8644..9063)
                     /locus_tag="ACFM6C_000966"
     CDS             complement(8644..9063)
                     /locus_tag="ACFM6C_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4265 domain-containing protein"
                     /protein_id="HFC6158442.1"
                     /translation="MKSKLTVVYYDLESNIAEEILSGNIMPDGNFLIQEIPLFAPNLA
                     LNDIVAIEREDKMLFFDHLIKASGNTTINIVVLDHFPKDLLAAIEEHSGKIRKNGENY
                     LSVNFPPKKYNSDLKGILNRYEEANILSYREACLGFS"
     gene            complement(9060..9797)
                     /locus_tag="ACFM6C_000967"
     CDS             complement(9060..9797)
                     /locus_tag="ACFM6C_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin-type HINT domain-containing
                     protein"
                     /protein_id="HFC6158443.1"
                     /translation="MVKTADGYKAIAHIRAGESVLSKDEASGKTGYKPVTARYGNPYQ
                     ETVYIEISDGIGNSQTLISNRIHPFYSDGKWIKAEDLKAGSRLLSENGRTQTVRNIVV
                     KPKPLKAYNLTVADWHTYFVKGDKAETEGVWVHNDCPYGGSNNLEKAKLRAERLSKND
                     RAGKDFTKAGKEAVIDLNRIQNNGQVKCANCGIETIPAKQSIKNISPTSNERQVDHVI
                     PKSKGGQGTPKNGQVLCRGCNIKKSNK"
     gene            complement(9946..10176)
                     /locus_tag="ACFM6C_000968"
     CDS             complement(9946..10176)
                     /locus_tag="ACFM6C_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MafI family immunity protein"
                     /protein_id="HFC6158444.1"
                     /translation="MKTLDERIKNLGKSLEDRIDANLIDAALEYITFSERLLAFETLC
                     DYIEDFNIQLTEKESQEISFINKEFGIESTSD"
     gene            complement(10191..>11634)
                     /gene="mafB"
                     /locus_tag="ACFM6C_000969"
     CDS             complement(10191..>11634)
                     /gene="mafB"
                     /locus_tag="ACFM6C_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="polymorphic toxin MafB class 1"
                     /protein_id="HFC6158445.1"
                     /translation="AAFGQPALAADLAQDPFITDNTQRQHYEPGGKYHLFGDPRGSVS
                     DRTGKINVIQDYTHQMGNLLIQQAAIQGNLGYTVRFSGHGYEEHAPFDNHAADSASKE
                     QGNVNEGFTVYRLNWEGHEHHPADAYDGPKGGNYPKPTGARDEYTYHVNGTARSIKLN
                     PTDTRSIRQRISDNYNNLGSNFSDRADEANRKMFEHNAKLDRWGNSMEFINGVAAGAL
                     NPFISAGEALGIGDILYGTRYAIDKAAMRNIAPLPAEGKFAAIGGLGSVAGFEKNTRE
                     AVDRWIQENPNAAETVEAVFNVAAAAKVAKLAKAAKPGKAAVSGDFSAAYNTRTTRKV
                     TTETEGLNRIRQNQKNSNIHEKNYGRDNPNHINVLSGNSIQHILYGDEAGGGHLFPGK
                     PGKTTFPQHWSASKITHEISDIVTSPKTQWYAQTGTGGKYIAKGRPARWVSYETRDGI
                     RIRTVYEPATGKVVTAFPDRTSNPKYNPVK"
BASE COUNT         2855 a         2939 c         2466 g         3374 t
ORIGIN      
        1 ctcaaacaaa tcggcggccg cccgggaaaa cccgccccga acgcgtccgg aaaatatgct
       61 tatcgatgga aaacgcagcc gcatcccccg ccgggcgttt cagacggcac agccgccgcc
      121 ggaaatgtcc gacgcttaag gcacagacgc acacaaaaaa ccgtatgcct gcacctgcaa
      181 caatccgaca gataccgctg ttttttccaa accgtttgca agtttcaccc atccgccgcg
      241 tgatgccgcc gccaccattt aaaggcaacg cgcgggttaa cggctttgcc gtcggcaaag
      301 cagccggata ccgctacgta tcttgaagta ttgaaaatat tacgatgcaa aaagaaaatt
      361 taagtataat aaagcagaat tctttaacgg attcttaaca atttttctaa ctgaccataa
      421 aggaaccaaa atatgaaaaa agcacttgcc acactgattg ccctcgctct cccggccgcc
      481 gcactggcgg aaggcgcatc cggcttttac gtccaagccg atgccgcaca cgcaaaagcc
      541 tcaagctctt taggttctgc caaaggcttc agcccgcgca tctccgcagg ctaccgcatc
      601 aacgacctcc gcttcgcagt cgattacacg cgctacaaaa actataaagc cccatccacc
      661 gatttcaaac tttacagcat cggcgcgtcc gccatttacg acttcgacac ccaatcgccc
      721 gtcaaaccgt atctcggcgc gcgcttgagc ctcaaccgcg cctccgtcga cttgggcggc
      781 agcgacaact tcagccaaac ctccatcggc ctcggcgtat tggcgggcgt aagctatgcc
      841 gttaccccga atgtcgattt ggataccggc taccgctaca actacatcgg caaagtcaac
      901 actgtcaaaa acgtccgttc cggcgaactg tccgccggcg tgcgcgtcaa attctgatat
      961 gcgccttatt ccgcaaaccg ccgagccttc ggcggttttg ttttctgcca ccgcaactac
     1021 acaagccggc ggttttgtac gataatcccg aatgctgcgg cttctgccgc cctatttttt
     1081 gaggaatccg aaatgtccaa aaccatcatc cacaccgaca aagcccccgc cgccatcggc
     1141 gcgtacagcc aagccgtccg agcaggcgac accgtttaca tgagcggtca aatccccctc
     1201 gatcccgcca cgatgaccgt cgtcggcaac ggcgatttcc gcgccgaagc gcgccaagtg
     1261 ttccaaaacc tgcaagccat cgccgaagcg gcaggcggca cgctggccga catcgtcaaa
     1321 ctcaacgcct acctgaccga cttgggcaat ttcgccgtct tcaacgaagt catggcggaa
     1381 tttatcgccg agcccttccc cgcccgcgcc gccgtcggcg ttgcctcgct gcccaaaggc
     1441 gtgcaggtcg aagccgaagc cgtcctcgtt ttgaacgcat aattccacgt tcggactgca
     1501 tgatatttca aaaccatgcc gtccgaaccg caacactttc ccacttcaca acatctgcaa
     1561 tggcacatta cgcaatcggc gacatacaag gctgtttcga cgaactgacc gcgctgctcg
     1621 gcaaaatcgg tttcaaccac ggcacggaca ccctctggct gacgggcgac atcgtcaacc
     1681 gcggcccgaa atccctcgaa acgctgcaat tctgcatccg gcacgaaaac agtgtgcaaa
     1741 tcgtcctcgg caaccacgac ctgcacctgc tcgctgtcgg ctgcggcgaa ggtgcgccca
     1801 aacgcagcga cacaatcgaa cccatactca aacaccccga cgggaaaaaa atgctcgact
     1861 ggctgcgcgc gcaaccgctg ttgatacgcg agggcagccg cgtgatggta cacgccggca
     1921 tcctgccgca atggcgcata accaaagccg aatcgctcgc cggagaagcc gaagccgaac
     1981 tgcgcggcaa aaaatacgtc aaattcttct ccaaaatgta cggcaacaaa ccggccgcgt
     2041 gggacgaagg tttggaaggc tatgcccgcc tgcgcttcat cgtcaacgcc ttcacgcgga
     2101 tgcgcgccct gacctttaaa aacgaactgg atttcgacta caaatccaca gtgaaaaaaa
     2161 tgccgcctta cctgcgcccg tggttcaaag cccccgaccg gcaaaacctc gaccgcacca
     2221 tcatcttcgg acactggtcc tcgctgggct acacgaatgc cgacaacgtc atctcgctgg
     2281 acaccggcgc gctgtggggc ggacagctga ccgccgtcaa cctcgaaacg gaagaaatta
     2341 cccaagtcca agccgccggc ggcatagact ggaaaagctt cgcaaaataa cggaccgccc
     2401 cactatgcac aaaatcctgc ccatcgccca cgtcctctcc cgactgggta tgctgttttc
     2461 ctttatcctg ctgatacccg ccgccctctc ctacgccttt tcggacggcg cgtacaccgc
     2521 cttcgccacc accgcgaccg ttaccctttc cggctcgtac atcgtccggc tcgccaccct
     2581 ccggttcagg cgcgaactgc gcccgcgcga cggcttcacc ctcgtcctga tgttgtggct
     2641 ggcgtttgcc gctatggcgg cgatgccgat gtacctgtat ttcccgaata tgggctttac
     2701 cgacgcattt tttgaatcga tgtcgggact gaccaccacc ggcgcgaccg tcatccccca
     2761 cgtcgacggg ctcgccccct ccgtcaactt ttggcggcat atgctcaact ggctgggcgg
     2821 gatgggcatc atcgtccttg ccgtcgccat cctgcctatg ctcggcgtag gcggcacgca
     2881 attattcaaa gccgaaatcc ccggcattga caaagaaagc aaaatgtcgc cgcgcatttc
     2941 ccaagtggcg aaaaaacttt ggttcggcta caccctgatc accatcctcg cggcagcctg
     3001 cctgcatttt gccgggatga gctggttcga tgccgtctgt cacgcgatgg cgaccctctc
     3061 gctgggcggg ttttccaccc acgatgccag catagcttat tacaactccc ccctcatcga
     3121 agcggtcatc atcgttttca ccattgtcgg cggcatcaat tttgccaacc atttcgccgc
     3181 cctcaacagc cgcagcctca aaacctattg gaaagacgaa gaatgccgga cgatgctgct
     3241 gctgctctcc ggcagcatcc ttgccgccgc cctgtacctg tggcacaccg gctattacgc
     3301 cggttttacc gaatccctgc gctacaccgc cttcaacttc gtctccatcg gactggcaaa
     3361 cgggctggcc aacaccgact tcgcacaatg gccgctcctg atttccctgt ggatgttttt
     3421 cctcgccaac atcctcgcca actccggctc gaccggcggc ggcatcaaaa ccatacgcgc
     3481 cctcgtcctg ttcaaattca gcctgcgcga aatgatggtg ctgctgcacc ccaaagccgt
     3541 ccgcaccgtc aaaatcagcg gcaaggccat acccgaccgc ctcgcgctga ccgttatgtc
     3601 cttcatcttc atctacttta tgaccgtcgt cctcttcagc ttcctgctga tggcgagcgg
     3661 tatggaattt accaccgcct tcaccgccgt catcgcctgc atcaccaacg ccggccccgg
     3721 cctgggcgaa gtcgggcccg ccagcaatta cgccggtttg gacgtgatgc agaaatggat
     3781 ctgcgttacc gccatgctct tgggcagact ggaaatcttc accgtcttca tcctcttcac
     3841 tcccgcctac tggaagaaat aaaaaatgcc gtctgaaaac ttttcagacg gcatcttgtc
     3901 ctttaaagaa gcggaagctc tacaaaagga aagaaatgct gaaacctctg ataaatttca
     3961 ggatatttct ctaaggcttt taatgctttt tcttttgaaa taggcggatc atagacatct
     4021 atccccctta agaaggcaat gcccgttaat gcattttttt gatcatttga aatgtaacca
     4081 taattaacga ctccaattac atcataaatt tcccctatac tcttatcaaa atcaatcaaa
     4141 tcaaaaatat acaatggaat tgtatcaata ggagtatctc tgacaactat atccaaccat
     4201 aatttaaatt cagaaagatt aatagcatca tagaacatac agactattgc aaatcctaaa
     4261 tcttcacaat tttctttact aattttccac ataattattt acctttatcc attgcttccc
     4321 aaccgataca tccggtattt tagattctcc tttgccgtca aacgctcttt tggttacctg
     4381 ctttgtatca aaaatgccgt ctgaaagccg aatattgttt cagacggcat tttgattgtt
     4441 gggtttttaa tcagagcttt gtttgataat ttgttatttt gaataaaata caggttctgt
     4501 cgagctgata acttctatta cagaatcgct aaaaaagaaa atataagcct tataatattt
     4561 cttttcaaaa aaatcaaaac tttcttcttt caaccagtcc atataactgt catctattat
     4621 ctcgaaaaaa taatttatag caggatttct atcccaatca tttttttctt tattttcaaa
     4681 taaatattct gaaaatttta ctttataaga ttcatctgtt atttgaaaat gaattatatt
     4741 gtcaataaat atttcaatat ttaattcata atttcggtcg gatgccaaaa tgttcacatc
     4801 ttgttcggta acacaaattt tgtccacata aaatctgtga ttattgttag aaaattgtaa
     4861 tggtttaatc ttcacaatcg ttttccatat ctgatttttg ttttcttatt gccctgccgg
     4921 ataaagcagg tctgcctccg tactgtctat cctcacattt actttcctgc catcggcttt
     4981 tatctccccg gttttaccgt ttttgccaac ttcgcggctt tggcggcggc aatgttgaag
     5041 gcggcttcga cggtttcggc ggcattgggg ttgacccgta ctcatccgca aacggcaaca
     5101 cgacggacgg tgtttgcttt tcagccgtct gccgttttga ccaaggtgct gccgtggaag
     5161 gagcaggtgt aggatttttg aagaactcag ttctcaatat cctatttcaa atgaaggaaa
     5221 tgccgtctga aaattaaaca cggtttcaga cggcattttg attgttgggt tttcaacccg
     5281 acctacggtt cctaatgatt ttcagataaa aataaagaaa tatcttctaa cgcatcttca
     5341 gccctacctt gaagctctgg atcatcttgc tttgaatgta gtaaagaaat aactttatcg
     5401 taatcaccga tatttgaatg tagcctggcg agatgtccga aacaggttag cgataatccg
     5461 gcaatatcca agtctttatt tttcgataat tccatcaatt tctcagaaat ccacggtact
     5521 tcatatgctt tggaattaaa taccatatca agaatgccat ctataacact ttgtttatca
     5581 tcagaagaaa tcaacttttc tgttttactt ttatcagtca ttttttaatt tttccttttg
     5641 aattaactaa tccaatcctg ctttttttaa agcatttttc tgatcggtat gcaaatcttg
     5701 ccaacttctg acatgcccgt gatattccgc agaaccgtta ttaaaagttt gagttttgtc
     5761 taatacaacg atttcattat tggctttatc aaccccaact cttcgaggag aagttgattt
     5821 aacttgaacg gaattatcaa gagctgcttg tccgtttgtt ggtgctctac ttttcacaga
     5881 attatcattt ttgccatgat aagaagcgtc tttatatcgt tggttgcctt tatcatacgg
     5941 acaatcatta tgaacccaaa ccccttccgt ttccgcctga ctgcccttga cgaagtaagt
     6001 atgccaatcg gcaacggtca gattgtaggc tttgagcggt tttggtttga caacggtgtt
     6061 gcggacggtt tgggttctgc cgttttcgga taacagtctg cttcccgcct ttaagtcttc
     6121 cgccttaatc catttgccgt ccgaataaaa cgggtggatg cggttggaaa tcagggtttg
     6181 gctgttgccg atgccgtctg aaacttcaat gtaaacggtt tcccgatacg gattgccgta
     6241 tcgggcggta acgggtttgt atcctgtttc cccgcttgcc tcgtccttgg aaaggacgcg
     6301 gtctccggct tgaatatggg cgatggcttt gtagccgtct gccgttttga ctaaagcacc
     6361 gacgtataag ggacggagac aggatttttg aagaacttag ttcccaatat cctgtttcaa
     6421 atgaaggaaa ggttgtctga aagttaaaca cggtttcaga cgacctttaa tcaaatttaa
     6481 gaaagccctt accaaacaaa cggtttccga ttcatatccg aaaggttgtc aacttcatta
     6541 tccagcaaga actgctcaaa agcattccaa cccttttttt ccaccaattc ggcttcctgt
     6601 ttatacaagg ggacaagcaa agggaaaacg atattgtagt gttcgccata acagacctga
     6661 aaatcatcgt cgaaataaaa tggggcggaa acatacagtg catccatttt tgttgaatca
     6721 acaatgcttc taggcaaata aataacctgt cctcgaagaa ggattttttt attctcaatg
     6781 atggtttctg ccagccatct taaaaatggg aaaatctgat tttcatcata ttttaaagaa
     6841 catacaaaaa gtatttcaaa tctgctttta taattcagat catgtttgct taactctaaa
     6901 gtaatataag tttttaaatc cctgttaggg gaagagggaa tagctgcgat atttaatttg
     6961 tactgacttc ccgaatcgct tttcgagcca tgagaaatag tgcctatata tttttcaata
     7021 tgattaatca tatttttctt agcttcccat cactgtatcg aataatcata gaccagattg
     7081 agacaaaacg ccttgttccc attgatagaa agtccgtctg aaaagtaaaa gcgtttcaga
     7141 cggactacgt ttgccgacta tccgacccac tttattatcc aatgagattc ttgcaggtat
     7201 tcttttaata tttctaagtt ttcgacccag tcatcgtaac tgtcaaatga tgagaatttg
     7261 tcatttgaag ataacagtat cagaaatccc ccggtatttt cctgatcatc aataattttt
     7321 atgaattttt cttcaggatt gaccccattc aggataaccc ccaaagtatt gaattttatg
     7381 tccatagaca caccctaatc tttaatggga atatggtttt ttcaacccaa cctacacttt
     7441 ttgttagttc ccatacgaac caaaaccttc ataattacaa tcattttttt gtgcaatacc
     7501 aaataacgta gtttcaatag ctaaaatgtt ttcaagggaa gggacgatat tgacggaaca
     7561 atagcaagtc cacatttctc cgaattcatt ttgctcaata ctgatttgaa aatcttgccg
     7621 ataagaaatg agtcggcttt ctattgattg cagattcttt tgagaacctc ctataaaaaa
     7681 ctctattatc ataggttttg tcaaatcaaa ccctagttct tgatattgtt tcagtacatc
     7741 tgaagtagat ttttcgtcaa caatcatttt taatctccat cttgttttcg gtattttttc
     7801 cccgggcttt caattcgatt gtaattattg gtacttttgg aaccaccgtg agcgtcaatt
     7861 cttctagatt catctttgaa tgcctctcga ttatttttgg caggagtaaa atctgtagct
     7921 atatgagggt cattattaac cctagcttct cttgctccag agatttggga acgttgtctt
     7981 gtgccctttc cagaataagt tcgaccactt tcatgagtat tagtataaga accaacttct
     8041 gtcctatatt tttctccata cggacaatca ttatgaaccc aaaccccttc cgtttccgcc
     8101 ctatcaccct tgacgaagta agtatgccag tcggcaacgg tcagattgta ggctttgagc
     8161 ggctgctgtt tgaaggtaat gttttgaacc gtctgttttg cgccgctttc ggaaagcagg
     8221 gtgtcgcctt ttttcagacg acctgcctgt atccattttc cttgactgta aaacgggtgg
     8281 attttattgg aaacgagggt ctgtatttta ccgatgccgt ctgaaacttt aatgtaaacg
     8341 gtttcccgat acggattacc gtatcgggcg gtaacgggtt tgtatcccgt ttctccgctt
     8401 gcctcgtcct tggaaaggac gcggtctccg gctcggatat gggcaatggc tttgtagccg
     8461 tctgccgttt tgaccaaggt gctgccgtgg aaggagcagg tgtaggattt ttgaaaaact
     8521 taattcccaa tatcctgttt caaatgaagg aaataggtcg tctgaaaatt aaacacggtt
     8581 tcagacgacc ttttaatcgt taggtttaca atctaacgta atccattctt acttatagat
     8641 cgattaagag aagcccaaac aagcttccct gtagctgagg atatttgctt cctcatatct
     8701 atttaaaatt ccttttaaat cagaattata ttttttgggc ggaaaattaa ccgataaata
     8761 attctctcca ttttttctga ttttaccact gtgttcttct atggctgcca ataaatcctt
     8821 tgggaaatga tccaaaacaa cgatgtttat cgtggtattt cctgaagctt ttatcaagtg
     8881 gtcgaaaaac agcatcttat cctcacgttc tatggcaaca atgtcgttta aagccaaatt
     8941 cggtgcgaaa agaggaatct cttgaataag aaaatttcca tcaggcatta tgtttcctga
     9001 cagtatttct tctgcaatat tgctttccaa atcgtaatag acgacagtaa gtttcgattt
     9061 catttgttac tcttcttaat gttgcagcct ctgcataata cctgcccgtt tttaggtgta
     9121 ccttgaccac ccttagattt agggatgaca tgatctactt gtctttcatt tgaagtagga
     9181 gaaatatttt ttatagattg tttggctgga attgtttcaa taccgcaatt agcgcactta
     9241 acttgaccat tattttgaat cctattcaaa tcaataacgg cttcttttcc tgctttagta
     9301 aagtcttttc ctgcccgatc gtttttacta agccgttctg cgcgaagttt tgctttctct
     9361 aaattatttg aaccgccata cggacaatca ttatgaaccc aaaccccttc cgtttccgcc
     9421 ttatcgcctt tgacaaagta agtatgccaa tcggcaacgg tcaaattgta ggctttgagt
     9481 ggttttggtt tgacaacgat gttgcggacg gtttgggttc tgccgttttc ggataacagt
     9541 ctgcttcccg cctttaagtc ttccgcctta atccatttgc cgtccgaata aaacggatgg
     9601 atgcggttgg aaatcagggt ttgactgttg ccgatgccgt ctgaaatttc aatgtaaacg
     9661 gtttcttgat agggattgcc gtatcgggcg gtaacgggtt tgtatcccgt ttttccactt
     9721 gcctcgtcct tggagaggac gctctcgccg gctcggatat gggcaatggc tttgtagccg
     9781 tctgccgttt tgaccaaggt gctgccgtgg aaggagtagg tgtaggattt ttgaagaact
     9841 tagttctcaa tatcctgctt caaatgaagg aaaggtcgtc tgtaaattaa acacagtttc
     9901 agacgacttt ttgattgttg ggtttttaaa ccgacctaat atttattaat ctgatgtact
     9961 ttcaattcca aattccttat taataaaaga gatttcttgg gattcttttt ccgtaagctg
    10021 gatattgaaa tcttctatat aatcacatag cgtttcaaaa gctagcaaac gttctgaaaa
    10081 agtaatgtac tctagtgcgg catcaattag attagcgtca attctatctt caagagattt
    10141 tcctaaattt tttattcgtt cgtctaatgt tttcatcttt caaatactca ttattttaca
    10201 gggttatatt tgggattaga ggttctatcg gggaatgcag ttaccacttt tcctgttgca
    10261 ggttcataaa ctgttctgat acgaattcca tctctcgttt catatgatac ccacctggct
    10321 ggtcttcctt tagcaatata tttgccgcct gttccagtct gtgcatacca ttgcgttttt
    10381 ggggatgtaa cgatatcact aatttcatga gttattttac tggctgacca atgttggggg
    10441 aatgttgtct taccaggttt gccaggaaaa agatgcccac ctcctgcttc atctccatac
    10501 agtatatgtt gtatagaatt tccagataaa acattaatat gattaggatt atctcttcca
    10561 taatttttct catgtatatt actatttttc tggttctgtc tgattctatt taacccctct
    10621 gtttctgtag taacttttct agttgttctt gtattgtatg cagcagaaaa atccccgcta
    10681 accgcagctt tccccggttt cgccgccttt gccagcttcg cgactttggc ggcagcggca
    10741 acgttgaaga cggcttcgac ggtttcggcg gcattgggat tttcctgtat ccaccggtca
    10801 acggcttcgc gcgtattctt ttcaaagccc gccacgctgc ccaagccgcc gatggcggcg
    10861 aatttgccct cggcgggcaa gggggcgatg ttgcgcattg cggctttgtc tatggcatag
    10921 cgcgttccgt acagtatgtc gcctatgccc aaggcttcgc ccgcgctgat aaaggggtta
    10981 agcgcgccgg cggcgacgcc gttgataaac tccatgctgt tgccccagcg gtcgagcttg
    11041 gcattgtgct cgaacatttt tctgttggct tcatcggcgc ggtcggagaa attgctgccg
    11101 aggttgttgt agttgtcgga tatgcgttgc cggatgctgc gggtgtcggt cggattgagt
    11161 ttgatactgc gggctgtgcc gttgacgtga taggtgtatt cgtctcgtgc gcccgtaggt
    11221 ttggggtaat tgccgccctt cgggccgtcg taggcatcgg cgggatgatg ttcgtgtcct
    11281 tcccagttga gccggtatac ggtaaagcct tcgttgacgt tgccttgttc tttgcttgcg
    11341 ctgtcggcgg catggttgtc gaagggggcg tgttcttcgt atccgtgtcc tgaaaagcgg
    11401 acggtgtaac caagattgcc ttggattgcc gcctgttgga tgagcaggtt gcccatctgg
    11461 tgggtatagt cttggatgac gttgattttg ccggtgcggt cggaaacgct gccgcgcggg
    11521 tcgccgaaga ggtggtattt gccgccgggt tcgtagtgct gccgttgggt gttatcggta
    11581 atgaacgggt cttgcgccaa gtccgctgcg agggcgggct gtccgaaggc ggcg
//
LOCUS       DAXHPV010000048        11372 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.048, whole genome shotgun sequence.
ACCESSION   DAXHPV010000048 DAXHPV010000000
VERSION     DAXHPV010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11372
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.048"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(148..1191)
                     /gene="argC"
                     /locus_tag="ACFM6C_000970"
     CDS             complement(148..1191)
                     /gene="argC"
                     /locus_tag="ACFM6C_000970"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0070401 - NADP+ binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HFC6158446.1"
                     /translation="MSKKIKVGIVGATGYTGVELLRLLAAHPDVEVAAVTSRSEAGTA
                     VADYFPSLRGVYGLAFQTPDEAGLEQCDIVFFATPNGIAMKDALRLLEQGVRVIDLSA
                     DFRIRDIPTWEHWYGMTHAAPGLVSQAVYGLSELNREAVAQARLVANPGCYPTCVSLP
                     LVPLLRQCRLKPGMPLIADCKSGVSGAGRKGNVGSLLCEASDNFKAYGIAGHRHLPEI
                     RQTIAGLQDGIAEGFVFTPHLAPMIRGMHATVYLHLSDGICPETVLRDYYRDSLFVDI
                     LPAGSTPETRSVRGANLCRISIQQAAQSDVWVVLSVIDNLVKGAAGQAVQNMNIMFGL
                     KETHGLDAIPLLP"
     gene            complement(1188..1469)
                     /locus_tag="ACFM6C_000971"
     CDS             complement(1188..1469)
                     /locus_tag="ACFM6C_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158447.1"
                     /translation="MKTLVLLLLSFSTTTAFAAYGLGLGQAPKYPADFRAYGYVYSGR
                     QGWVLKTEADAIKLDTLFKRFVYRPSAANQNPVGQRSDGIPANHTKEKP"
     gene            1831..2979
                     /locus_tag="ACFM6C_000972"
                     /pseudo
     CDS             1831..2979
                     /locus_tag="ACFM6C_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704893.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
     gene            2988..3215
                     /locus_tag="ACFM6C_000973"
     CDS             2988..3215
                     /locus_tag="ACFM6C_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158448.1"
                     /translation="MKNWKQFTFFVILVIACYQVLYFLSDMFLLDYINKYSWNLNFIQ
                     GTLNFFSIYLPYVFVSRIFRNTNQEKEYKND"
     gene            3208..3561
                     /locus_tag="ACFM6C_000974"
     CDS             3208..3561
                     /locus_tag="ACFM6C_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158449.1"
                     /translation="MIELQLHELKLVSGGGPVTDNIAGNVANAATTKGGPTWGDLVAI
                     PAAAAAVYYLPKNAYGAAGANGVYNVTRDWVNDAVNAPPYNGRPIFEIEHGLTAPATK
                     ADKSGNGYTDGTDYC"
     gene            3961..4400
                     /locus_tag="ACFM6C_000975"
                     /pseudo
     CDS             3961..4400
                     /locus_tag="ACFM6C_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010356706.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            4729..5031
                     /locus_tag="ACFM6C_000976"
     CDS             4729..5031
                     /locus_tag="ACFM6C_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158450.1"
                     /translation="MTWVGGSGNAQQSSYYCEICESAGLNDTGNPDKSLGLPNNTFSN
                     PPGWGATIGALAGSRIGMPEFGTFASHAIENFDWSWYRRYREIAETIEREYSGGLP"
     gene            5315..5467
                     /locus_tag="ACFM6C_000977"
                     /pseudo
     CDS             5315..5467
                     /locus_tag="ACFM6C_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009117473.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine peptidase family C39 domain-containing
                     protein"
     gene            5732..7012
                     /locus_tag="ACFM6C_000978"
                     /pseudo
     CDS             5732..7012
                     /locus_tag="ACFM6C_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222098.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0046930 - pore complex [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006811 - monoatomic ion transport
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            7121..>11372
                     /gene="hrpA"
                     /locus_tag="ACFM6C_000979"
     CDS             7121..>11372
                     /gene="hrpA"
                     /locus_tag="ACFM6C_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-partner secretion exoprotein HrpA"
                     /protein_id="HFC6158451.1"
                     /translation="MNKGLHRIIFSKKHSTMVAVAETANSQGKGKQAGSSVSVSLKTS
                     GDLCGKLKTTLKTLVCSLVSLSMVLPAHAQITTDKSAPKNQQVVILKTNTGAPLVNIQ
                     TPNGRGLSHNRYTQFDVDAKGAVLNNDRNNNPFLAKGSAQLILNEVRGAASKLNGIVT
                     VGGQKADVIIANPNGITVNGGGFKNVGRGILTTGAPQIGKDGALTGFDVRQGTLTVGA
                     AGWNDKGGADYTEILARAVALQGKLQGKNLAVSTGPQKVDYASGEISAGTAAGTKPTI
                     ALDTAALGGMYADSITLIANEKGVGVKNAGTLEAAKQLIVTSSGRIENSGRIATTADG
                     TEASPTYLSIETTEKGAAGTFISNDGRIESKGLLVIDTGEDIGLRNGAVVQNNGNRPA
                     ATVLNAGRNLVIESKANVNNAKGSTNLSTGGRTVIKEASIQTGTTVYSSSKGNAELGN
                     NTRITGADVTVLSNGTISSSAVIDAKDTAHIEAGKPLSLEASTVTSDIRLNGGSIKGG
                     KQLALLADDNITAKTTNLNTPGNLYVHTGKDLNLNVDKDLSAASIHLKSDNAAHITGT
                     SKTLTASKDMGVEAGSLNVTNTNLRTNSGNLHIQAAKGNIQLRNTKLNAAKALETTAL
                     QGNIVSDGLHAVSADGHVSLLANGNADFTGHNTLTAKADVNAGSVGKGRLKADNTNIT
                     SSSGDITLVAGNGIQLGDGKQRNSINGKHISIKNNGGNADLKNLNVHAKSGALNIHSD
                     RALSIENTKLESTHNTHLNAQHERVTLNQVDAYAHRHLSITGSQIWQNDKLPSANKLV
                     ANGVLALNARYSQIADNTTLRAGAINLTAGTALVKRGNINWSTVSTKTLEDNAELKPL
                     AGRLNIEAGSGTLTIEPANRISAHTDLSIKTGGKLLLSAKGGNAGAPSAQVSSLEAKG
                     NIRLVTGETDLRGSKITAGKNLVVATTKGKLNIEAVNNSFSNYFPTQKAAELNQKSKE
                     LEQQIAQLKKSSPKSKLIPTLQEERDRLAFYIQAINKEVKGKKPKGKEYLQAKLSAQN
                     IDLISAQGIEISGSDITASKKLNLHAAGVLPKAADSEAAAILIDGITDQYEIGKPTYK
                     SHYDKAALNKPSRLTGRTGVSIHAAAALDDARIIIGASEIKAPSGSIDIKAHSDIVLE
                     AGQNDAYTFLKTKGKSGKIIRKTKFTSTRDHLIMPAPVELTANGITLQAGGNIEANTT
                     RFNAPAGKVTLVAGEELQLLAEEGIHKHELDVQKSRRFIGIKVGKSNYSKNELNETKL
                     PVRVVAQTAATRSGWDTVLEGTEFKTTLAGADIQAGVGEKARVDAKIILKGIVNRIQS
                     EEKLETNSTVWQKQAGRGSTIETLKLPSFESPTPPKLSAPGGYIVDIPKGNLKTEIEK
                     LSKQPEYAYLKQLQVAKNINWNQVQLAYDRWDYKQEGLT"
BASE COUNT         3253 a         2659 c         2708 g         2752 t
ORIGIN      
        1 attcccgctt ttgcgggaat gacggtattt tagatttttg ttttcgcgga ataatgagcc
       61 aaaagccgtc cgaacccaaa aaaaccgccg ctttcagatg gcatcaaaaa accgcaggca
      121 cgatgcctgc ggtttgccgt ttgcgtttca ggggagcagg gggattgcgt ccaagccgtg
      181 tgtttccttc agtccgaaca tgatgttcat attttgcacc gcctgtcccg ccgcgccttt
      241 gacgaggttg tcgatgacgg aaaggacgac ccacacatcg gattgcgccg cctgttggat
      301 gctgatgcgg cagaggtttg cgccgcgcac gctgcgggtt tcgggtgtcg aaccggcggg
      361 caggatgtcc acgaacaggc tgtcgcgata atagtcgcgc aaaacggttt cggggcagat
      421 gccgtctgaa aggtggaggt aaacggtggc gtgcataccg cgtatcatcg gcgcgaggtg
      481 cggcgtgaac acgaatcctt cggcgatgcc gtcctgaagc ccggcgatgg tctgcctgat
      541 ttcgggcagg tggcggtgtc cggctatgcc gtaggctttg aagttgtcgc tggcttcgca
      601 caacagcgaa ccgacattgc ctttcctgcc cgcgccggat acgccggatt tgcagtcggc
      661 aatcagcggc ataccgggct tcagacggca ttgccgcaac agcggcacga gcggtaggga
      721 tacgcaggtc gggtagcagc cggggttggc gacgaggcgc gcctgtgcga cggcttcgcg
      781 gttgagttcg ctcaatccgt acacggcttg ggaaacgagg ccgggggcgg cgtgggtcat
      841 gccgtaccag tgttcccagg tcggaatgtc ccgtatgcgg aagtcggcgg aaaggtcgat
      901 gacgcgcacg ccctgttcca aaaggcgcag cgcgtctttc atagcgatgc cgttgggcgt
      961 ggcgaagaag acgatgtcgc attgttccaa acctgcctcg tcgggcgttt ggaaggcgag
     1021 gccgtacacg ccgcgcagac ttggaaagta atcggcaact gcggttcccg cttcgctgcg
     1081 gctggttacg gcggcgactt cgacatcggg atgggcggca agcaggcgca gcagttccac
     1141 gccggtgtag cccgtcgcgc cgacaatgcc gactttgatt tttttactca tggtttttcc
     1201 tttgtgtggt tggcgggtat gccgtccgaa cgctgtccga cggggttttg attggcggcg
     1261 gaaggacggt acacaaagcg tttgaaaagc gtgtctaatt taatggcatc cgcctctgtt
     1321 tttaaaaccc agccctgccg tccggaataa acataaccgt aggcgcgaaa gtcggcagga
     1381 tatttcggtg cctgccccaa acccaaaccg tatgcggcga aagcggtggt cgtggagaag
     1441 gaaagcagga ggaggacgag ggttttcata aggttccaaa ccgaacgggg cgatgaagcc
     1501 cgattatagc aaaaggtcgt ctgaaaaccg ttttcagacg accttttatt taattacaat
     1561 aaaaatgtta acaacaaaaa acaaaccgct ttttttcgtt tggaaacaaa acaaattttt
     1621 atagtggatt aaatttaaac cagtacagcg ttgcctcgcc ttgccgtact atttgtactg
     1681 tctgcggttt cgtcgccttt tcctgatttt tgttaatcca ctataacaaa attggcaaca
     1741 attccttgac gcacacacaa aaaaaacttt aatatttgta aatatatgta acattataaa
     1801 ttttaaatat tttctgagta aggggaagta atgagcatcc atctcgactt cggcattagt
     1861 cctaaaacgt tccgacagac ttatctgtat caaaagccca agctctttaa aggagcggtt
     1921 cggaatctcg aagccgcatc ttggaaagat atcaacgata tataccaacg agcagaccca
     1981 accgcaccgc tgtttcatct gcgtaaaaaa ggtgcaattg ttcctaaaga agaatacgtc
     2041 gaaagtttcg acgatttggg caaaactcgc taccgtttta ttaaatccgt tatctacgaa
     2101 catatgaaga atggcgcgtc gttgctctat aaccatatta tagtggatta aatttaaacc
     2161 agtacagcgt tgcctcgcct tgccggcgca cataccattg ttagtgggta tcttgctttt
     2221 ggcagcgacg aatcttataa aaaccattgg gacatccgag atgtgtatgc catccagctt
     2281 ttcggcaaga aacgttggca acttactgcc cctgatttcc ctatgccatt gtatatgcaa
     2341 cagactaaag atactgatat ttccattcct gaacatatcg atatggatat tatccttgaa
     2401 gcaggtgatg tcctctacat cccgcgcggt tggtggcaca gacctatccc gctcggctgt
     2461 gaaaccttcc acctcgctgt cggtaccttt ccgcccaacg gctataatta cctcgagtgg
     2521 ctaatgaaga aattccccac gatagaaagt ctgcgccaca gtttctcaga ctgggagcaa
     2581 gataggacgc gtatcaacga tactgccgca caaattgctg ccatgattgc cgaccccgtc
     2641 aattatgaag ccttcagtga agactttctc ggcaaagaac gtaccgatac cgcttttcat
     2701 ctcgaacagt tcgcgaatcc caacgctact ccgctttcag acgacgtcag gttgagatta
     2761 aatgccaata atttggatac gttggaaaag ggatatttga ttgggaatgg gatgaagata
     2821 agcgtagatg agttggggaa aaaagtttta gaacacatcg gtaagaatga accgttattg
     2881 ttgaaaaatc tactggttaa cttcaatcag ggaaaatatg aagaagttag gaagttgatt
     2941 tatcagttga tagagttaga ttttctggaa attttgtgag ggattctatg aaaaactgga
     3001 agcaatttac atttttcgta atattagtaa tagcttgtta tcaagtgcta tattttttat
     3061 cagatatgtt tcttctcgac tacattaaca aatatagttg gaatttgaat tttattcagg
     3121 gtactttgaa ttttttttca atatatctgc catatgtttt tgttagccga atttttagga
     3181 ataccaacca agaaaaggag tataaaaatg attgaacttc aacttcatga attgaagctg
     3241 gtttcagggg gaggtcctgt aacagacaat atagctggaa atgtagctaa tgctgccaca
     3301 accaaaggag gtcccacatg gggggatttg gttgcaatac ctgctgccgc agcggcagtt
     3361 tattatctgc cgaaaaatgc ttacggtgct gctggtgcaa atggtgtata caatgtgact
     3421 cgtgattggg taaatgatgc cgttaatgca cctccttata acggaagacc aatctttgag
     3481 attgaacatg gattaactgc tcccgcaaca aaagcagata aatcaggaaa cggctacact
     3541 gacggtacag attactgctg atatttctca ttgttcagac gatctctagg ggtcgtctga
     3601 aactttctta acttcaattt tatgaataga cccaagcaac ccttcttccg tcccgaagtc
     3661 gccgttgccc gccaaaccag cctgacgggt aaagtgattc tgacacgacc gttgtcattt
     3721 tccctatgga cgacatttgc atcgatatct gcgttattga ttatcctgtt tttgatattt
     3781 ggtaactata cgcgaaagac aacagcggag ggacaaattt tacctgcatc aggcgtaatc
     3841 agggtgtatg caccggatac ggggacaatt acagcgaaat tcgtggaaga tggagaaaag
     3901 gttaaggctg gcgacaagct atttgcgctt tcgacctcac gtttcggcgc aggaggtagc
     3961 gtgcagcagc agttgaaaac ggaggcagtt ttgaagaaaa cgttggcaga acaggaactg
     4021 ggtcgtctga agctgataca cgggaatgaa acgcgcagcc ttaaagcaac tgtcgaacgt
     4081 ttggaaaacc agaaactcca tatttcgcaa cagatagacg gtcagaaaag gcgcattaga
     4141 cttgcggaag atcagtagca aaaacggcac tgggcagaca ggaattgtcg ggattgggca
     4201 tggtatcctc cgatttggcg aagagcaacg aacctgttta tcttgtgaaa ataaaacccg
     4261 acaaaccaac catcactgca tacggtgagg aaaaaccgct gcaaatcggc atgacgttgg
     4321 aagcagacat cctgcacgag aaacggcgat tgtatgaatg ggtattggag ccgatttata
     4381 gtatatcggg caaactgtaa gacttgaggc tgaaagataa agaagttgtc tgaaaccttt
     4441 tcagacgacc agaagacaat atataaaaac acaaacttca aaactgcctg aaaccatccc
     4501 cttttacagg cactccgtct acaggcactc cgtctgtaaa agcaaggata gggcatctgc
     4561 ccttttgatt gtttgattaa cgatacaagg agtttcaaaa tgagagtttt atagtggatt
     4621 aaatttaaac cagtacagcg ttgcctcgcc ttgccgtacc atttgtactg tctgcggctt
     4681 cgtcgccttg tcctgattta aatttaatcc actatatgtg ttcatgaaat gacttgggtc
     4741 ggaggctcag gtaatgcgca acaaagttca tattattgcg aaatttgcga atctgcaggg
     4801 cttaacgata cgggaaatcc tgataaatct ttaggattgc caaacaatac gttcagtaat
     4861 ccgcctggtt ggggagctac aatcggagct ttagcaggta gccgcatagg gatgcctgaa
     4921 tttggtacgt ttgcgagcca tgccattgaa aatttcgact ggtcatggta tcgacgttat
     4981 agggaaattg ccgaaacgat tgaacgagaa tattcaggcg gtttgcctta atagttgagg
     5041 aggtcatgat gtttgccaaa cattatcaat tcatcgcact cggcatcatg ctgcttcttt
     5101 atatgttgat tctctatacg accgattttt ccaatctgac gtattggatg ctgtttttta
     5161 tctgttttat tacaggaaaa atattagctc gtttgttaga gaaaagcttt aaataaaata
     5221 gcagctagtc gcaaaaggtc gtctgaaacc ttttcaggcg gcctttctaa aatacatcca
     5281 acttcctaat ccctattttt caaaaaggaa atctatgccc catctgcaaa acctgtcttt
     5341 gggcttaaag aaaaagctgc ctgttatcct gcaaacagaa atatcagaat gcggcttggc
     5401 atgtctggcg gctgtggcgg gatttcatgg tttccatacg aatttacgcg cactgcgttc
     5461 aaaatactgt ccgagacctt tgcaaaattc cccaaaatcc cctaaatgtc ttggtgggaa
     5521 ttttggggaa ttttgcaaag gtctcattct ataactgtaa atacttttaa atttatgaca
     5581 aaatagtaaa tattgctaaa ataatattga tgtcatgaaa ttttttcctg ctccatgtct
     5641 gttggttatc ctggctgtca taccccttaa aaccttagct gccgatgaaa acgatgcaga
     5701 acttatccgt tccatgcagc gttagcagca catagatgct gaattgttaa ctgatgcaaa
     5761 tgtccgtttc gagcaaccat tggagaagaa caattatgtc ctgagtgaag atgaaacacc
     5821 gtgtactcgg gtaaattaca ttagtttaga tgataagacg gcgcgcaaat tttcttttct
     5881 tccttctgtg ctcatgaaag aaacagcttt taaaactggg atgtgtttag gttccaataa
     5941 tttgagcagg ctacaaaaag ccgcgcaaca gatactgatt gtgcgtggct acctcacttc
     6001 ccaagctatt atccaaccac agaatatgga ttcgggaatt ctgaaattac gggtatcagc
     6061 aggcgaaata ggggatatcc gctatgaaga aaaacgggat gggaagtctg ccgagggcag
     6121 tattagtgca ttcaataaca aatttccctt atataggaac aaaattctca atcttcgcga
     6181 tgtagagcag ggcttggaaa acctgcgtcg tttgccgagt gttaaaacag atattcagat
     6241 tataccgtcc gaagaagaag gcaaaagcga tttacagatc aaatggcagc agaataaacc
     6301 catacggttc agtatcggta tagatgatgc gggcggcaaa acgaccggca aatatcaagg
     6361 aaatgtcgct ttatcgttcg ataacccttt gggcttaagc gatttgtttt atgtttcata
     6421 tggacgcggt ttggtgcaca aaacggactt gactgatgcc accggtacgg aaactgaaag
     6481 cggatccaga agttacagcg tgcattattc ggtgcccgta aaaaaatggc tgttttcttt
     6541 taatcacaat ggacatcgtt accacgaagc aaccgaaggc tattccgtca attacgatta
     6601 caacggcaaa caatagtttt tctacgcaac cgccattcaa gctcaatgga acaaaacgcc
     6661 tttggttgcc caagacaagt tgtctatcgg cagccgctac accgttcgcg gatttgatgg
     6721 ggagcagagt cttttcggag agcgaggttt ctactggcag aatactttaa cttggtattt
     6781 tcatccgaac catcagttct atctcggtgc ggactatggc cgcgtatctg gcgaaagtgc
     6841 acaatatgta tcgggcaagc agctgatggg tgcagtggtc ggcttcagag gagggcataa
     6901 agtaggcggt atgtttgctt atgatctgtt tgccggcaag ccgcttcata aacccaaagg
     6961 ctttcagacg accaacaccg tttacggctt caacttgaat tacagtttct aacctctgaa
     7021 ttttttactg atatttagac ggtctttcct tatcctcaga ctgtcaaact ttacctacgt
     7081 acttggcgcg cagtacgttc atcttcaaaa tggaatagac atgaataaag gtttacatcg
     7141 cattatcttt agtaaaaagc acagcaccat ggttgcagta gccgaaactg ccaacagcca
     7201 gggcaaaggt aaacaggcag gcagttcggt ttctgtttca ctgaaaactt caggcgacct
     7261 ttgcggcaaa ctcaaaacca cccttaaaac cttggtctgc tctttggttt ccctgagtat
     7321 ggtattgcct gcccatgccc aaatcaccac cgacaaatca gcacctaaaa accagcaggt
     7381 cgttatcctt aaaaccaaca ctggtgcccc cttggtgaat atccaaactc cgaatggacg
     7441 cggattgagc cacaaccgct atacccagtt tgatgtcgac gctaaaggtg ctgtactgaa
     7501 caacgatcgc aacaacaacc cgtttctggc caaaggcagt gcgcagttga ttttgaacga
     7561 ggtgcgcggt gcggccagca aactcaatgg catcgttacc gtaggtggtc aaaaggccga
     7621 tgtgattatt gccaacccca acggcattac cgttaatggc ggcggcttta aaaatgtcgg
     7681 tcggggcatc ttaactaccg gtgcgcccca aatcggcaaa gacggtgcac tgacaggatt
     7741 tgatgtgcgt caaggcacat tgaccgtagg agcagcaggt tggaatgata aaggcggagc
     7801 cgactacacc gagatacttg ctcgtgcagt tgctttgcag gggaaattac agggtaaaaa
     7861 cctggcggtt tctaccggtc ctcagaaagt agattacgcc agcggcgaaa tcagtgcagg
     7921 tacggcagcg ggtacgaaac cgactattgc ccttgatact gccgcactgg gcggtatgta
     7981 cgcagacagc atcacactga ttgccaatga aaaaggcgta ggcgtcaaaa atgccggcac
     8041 actcgaagcg gccaagcaat tgattgtgac ttcgtcaggc cgcattgaaa acagcggccg
     8101 catcgccacc actgccgacg gcaccgaagc ttcaccgact tatctctcca tcgaaaccac
     8161 cgaaaaagga gcggcaggca catttatctc caatgatggt cggatcgaga gcaaaggctt
     8221 attggttatt gataccgggg aggacatcgg tttgcgtaac ggagcggtcg ttcaaaacaa
     8281 cggcaaccgc cctgctgcta cggtattaaa tgccggccgt aatttggtta tcgaaagcaa
     8341 agcaaatgtg aacaatgcta aaggttcgac caatctgtcg accggcggcc gtaccgtcat
     8401 caaggaggcc agtattcaga ctggcactac cgtatacagt tccagcaaag gcaacgccga
     8461 attaggcaat aacacacgca ttaccggggc agatgttacc gtattatcca acggcaccat
     8521 cagcagttcc gccgtaatag atgccaaaga caccgcacac atcgaagcag gcaaaccgct
     8581 ttctttggaa gcttcaacag ttacctccga tatccgctta aacggaggca gtatcaaggg
     8641 cggcaagcag cttgctttac tggcagacga taacattact gccaaaacta ccaatctgaa
     8701 tactcccggc aatctgtatg ttcatacagg taaagatctg aatttgaatg ttgataaaga
     8761 tttgtctgcc gccagcatcc atttgaaatc ggataacgct gcccatatta ccggcaccag
     8821 taaaaccctc actgcctcaa aagacatggg tgtggaggca ggctcgctga atgttaccaa
     8881 taccaatctg cgtaccaact cgggtaatct gcacattcag gcagccaaag gcaatattca
     8941 gcttcgcaat accaagctga acgcagccaa ggctctcgaa accaccgcat tgcagggcaa
     9001 tatcgtttca gacggccttc atgctgtttc tgcagacggt catgtatcct tattggccaa
     9061 cggtaatgcc gactttaccg gtcacaatac cctgacagcc aaggccgatg tcaatgcagg
     9121 atcggttggt aaaggccgtc tgaaagcaga caataccaat atcacttcat cttcaggaga
     9181 tattacgttg gttgccggca acggtattca gcttggtgac ggaaaacaac gcaattcaat
     9241 caacggaaaa cacatcagca tcaaaaacaa cggtggtaat gccgacttaa aaaaccttaa
     9301 cgtccatgcc aaaagcgggg cattgaacat tcattccgac cgggcattga gcatagaaaa
     9361 taccaagctg gagtctaccc ataatacgca tcttaatgca caacacgagc gggtaacgct
     9421 caaccaagta gatgcctacg cacaccgtca tctaagcatt accggcagcc agatttggca
     9481 aaacgacaaa ctgccttctg ccaacaagct ggtggctaac ggtgtattgg cactcaatgc
     9541 gcgctattcc caaattgccg acaacaccac gctgagagcg ggtgcaatca accttactgc
     9601 cggtaccgcc ctagtcaagc gcggcaacat caattggagt accgtttcga ccaaaacttt
     9661 ggaagataat gccgaattaa aaccattggc cggacggctg aatattgaag caggtagcgg
     9721 cacattaacc atcgaacctg ccaaccgcat cagtgcgcat accgacctga gcatcaaaac
     9781 aggcggaaaa ttgctgttgt ctgcaaaagg aggaaatgca ggtgcgccta gtgctcaagt
     9841 ttcctcattg gaagcaaaag gcaatatccg tctggttaca ggagaaacag atttaagagg
     9901 ttctaaaatt acagccggta aaaacttggt tgtcgccacc accaaaggca agttgaatat
     9961 cgaagccgta aacaactcat tcagcaatta ttttcctaca caaaaagcgg ctgaactcaa
    10021 ccaaaaatcc aaagaattgg aacagcagat tgcgcagttg aaaaaaagct cgcctaaaag
    10081 caagctgatt ccaaccctgc aagaagaacg cgaccgtctc gctttctata ttcaagccat
    10141 caacaaggaa gttaaaggta aaaaacccaa aggcaaagaa tacctgcaag ccaagctttc
    10201 tgcacaaaat attgacttga tttccgcaca aggcatcgaa atcagcggtt ccgatattac
    10261 cgcttccaaa aaactgaacc ttcacgccgc aggcgtattg ccaaaggcag cagattcaga
    10321 ggcggctgct attctgattg acggcataac cgaccaatat gaaattggca agcccaccta
    10381 caagagtcac tacgacaaag ctgctctgaa caagccttca cgtttgaccg gacgtacggg
    10441 ggtaagtatt catgcagctg cggcactcga tgatgcacgt attattatcg gtgcatccga
    10501 aatcaaagct ccctcaggca gcatagacat caaagcccat agtgatattg tactggaggc
    10561 tggacaaaac gatgcctata ccttcttaaa aaccaaaggt aaaagcggca aaatcatcag
    10621 aaaaaccaag tttaccagca cccgcgacca cctgattatg ccagcccccg tcgagctgac
    10681 cgccaacggt atcacgcttc aggcaggcgg caacatcgaa gctaatacca cccgcttcaa
    10741 tgcccctgca ggtaaagtta ccctggttgc gggtgaagag ctgcaactgc tggcagaaga
    10801 aggcatccac aagcacgagt tggatgtcca aaaaagccgc cgctttatcg gcatcaaggt
    10861 aggtaagagc aattacagta aaaacgaact gaacgaaacc aaattgcctg tccgcgtcgt
    10921 cgcccaaact gcagccaccc gttcaggctg ggataccgtg ctcgaaggta ccgaattcaa
    10981 aaccacgctg gccggtgccg acattcaggc aggtgtaggc gaaaaagccc gtgtcgatgc
    11041 gaaaattatc ctcaaaggca ttgtgaaccg tatccagtcg gaagaaaaat tagaaaccaa
    11101 ctcaaccgta tggcagaaac aggccggacg cggcagcact atcgaaacgc taaaactgcc
    11161 cagcttcgaa agccctactc cgcccaaatt gtccgcaccc ggcggctata tcgtcgacat
    11221 tccgaaaggc aatctgaaaa ccgaaatcga aaagctgtcc aaacagcccg agtatgccta
    11281 tctgaaacag ctccaagtag cgaaaaacat caactggaat caggtgcagc ttgcttacga
    11341 cagatgggac tacaaacagg agggcttaac cg
//
LOCUS       DAXHPV010000049        11189 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.049, whole genome shotgun sequence.
ACCESSION   DAXHPV010000049 DAXHPV010000000
VERSION     DAXHPV010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11189)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11189)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11189
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.049"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            85..366
                     /locus_tag="ACFM6C_000980"
     CDS             85..366
                     /locus_tag="ACFM6C_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HFC6158452.1"
                     /translation="MIHEEISAMPMGYETLIGDMGSALSGGQKQRIVLARALYCEPKI
                     LFLDAATSHLDIANEKAVNANLNGLSIIKIMAAHRKETVESADRKMSLG"
     gene            complement(387..1613)
                     /locus_tag="ACFM6C_000981"
     CDS             complement(387..1613)
                     /locus_tag="ACFM6C_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003699499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YihY family inner membrane protein"
                     /protein_id="HFC6158453.1"
                     /translation="MTFLQRLQGLADNKICAFAWFVVRRFDEERVPQAAASMTFTTLL
                     ALVPVLTVMVAVASIFPVFDRWSDSFVSFVNQTIVPQGADMVFDYINAFREQANRLTA
                     IGSVMLVVTSLMLIRTIDNTFNRIWRVNSQRPWMMQFLVYWALLTFGPLSLGVGISFM
                     VGSVQDAALASGAPQWSGALRTAATLTFMTLLLWGLYRFVPNRFVPARQAFVGALATA
                     FCLETARSLFTWYMGNFDGYRSIYGAFAAVPFFLLWLNLLWTLVLGGAVLTSSLSYWQ
                     GEAFRRGFDSRGRFDDVLKILLLLDAAQKEGKALPVQEFRRHINMGYDELGELLEKLA
                     RHGYIYSGRQGWVLKTGADSIELNELFKLFVYRPLPVERDHVNQAVDAVMMPCLQTLN
                     MTLAEFDAQAKKQQQS"
     gene            1768..1954
                     /locus_tag="ACFM6C_000982"
                     /pseudo
     CDS             1768..1954
                     /locus_tag="ACFM6C_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003779592.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase"
     gene            2158..2817
                     /gene="queC"
                     /locus_tag="ACFM6C_000983"
     CDS             2158..2817
                     /gene="queC"
                     /locus_tag="ACFM6C_000983"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HFC6158454.1"
                     /translation="MSNQKALVIFSGGQDSTTCLIQAIQTYGRENVQAITFQYGQRHA
                     VELERARWIAQDLGVKQTVLDLSLMRQITHNALMDDTAAIETAENGVPNTFVDGRNAL
                     FLLYAAIYAKGQGIRHIIAGVCETDFSGYPDCRDVFVKSMNVTLNLAMDYDFQIHTPL
                     MYLTKAQTWALADEMGVLDYIREQTHTCYNGIVGGCRECPSCILRERGLAEYLESKKA
                     V"
     gene            2845..3363
                     /locus_tag="ACFM6C_000984"
     CDS             2845..3363
                     /locus_tag="ACFM6C_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003698058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1543 domain-containing protein"
                     /protein_id="HFC6158455.1"
                     /translation="MPKLHMFYLGGNAGRSNIEVHDIQFAVCDDYREAVPALKAAWFG
                     DADKIHIDGWQVVEWADGYDIAVSETPKTKMPSENAPRLYFANVGGYRAGQLAEAHAF
                     GLFAAATPAEAKQKALQTLLTDSYVQQHKDNLKDVDNLLALDRIGNFHIRLTPNPHGK
                     PAEIGFQGYLPI"
     gene            3370..3792
                     /gene="queD"
                     /locus_tag="ACFM6C_000985"
     CDS             3370..3792
                     /gene="queD"
                     /locus_tag="ACFM6C_000985"
                     /EC_number="4.1.2.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HFC6158456.1"
                     /translation="MKITKIFTFDSSHMLDGHDGKCQNLHGHTYKLEITVSDDPVRGG
                     PKDGMVMDFTDLKAIVKQHITDPFDHAFIYHGGNGRESQIAALLEGWNMKTLRLPCRT
                     TAENMAVEMYDRLKNAGLNVCRVKLWETPTSCAEYEGE"
     gene            4061..4432
                     /locus_tag="ACFM6C_000986"
     CDS             4061..4432
                     /locus_tag="ACFM6C_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1304 domain-containing protein"
                     /protein_id="HFC6158457.1"
                     /translation="MKLLFIPLVLFVAAEHFYIAWLEMTQIPSEKAAETFKLPYEFME
                     QNRVQTLFGNQGLYNGFLGIGLVWSRFAAPDNAVYGATVLFLGFVLIAAAWGAFSSGN
                     KGILVKQGLPAFLAAAAVLAV"
     gene            4429..5067
                     /locus_tag="ACFM6C_000987"
     CDS             4429..5067
                     /locus_tag="ACFM6C_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003777273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HFC6158458.1"
                     /translation="MKKINVAPENPQYRIVEIFESLQGEGWNTGIPAVFVRLGKCNLA
                     CGWCDTDYLTFGMMSLSDILGCLKTYAARNIIITGGEPTIQPHLDMLLDMLKAEGYFL
                     CIETNGLNPAPPQIDYVATSPKACYAAKYEKSCIETADEVRIVADGDVVAFCENMERK
                     IRAHHYYLSPCEQNGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE"
     gene            5282..5413
                     /locus_tag="ACFM6C_000988"
     CDS             5282..5413
                     /locus_tag="ACFM6C_000988"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158459.1"
                     /translation="MAGLGKTKCRLKQNAVSDGIFLLPPKGKTAPAMDTEAVWIWSE"
     gene            complement(5402..5478)
                     /locus_tag="ACFM6C_000989"
     tRNA            complement(5402..5478)
                     /locus_tag="ACFM6C_000989"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5442..5444),aa:Pro,seq:cgg)
     gene            complement(5559..6644)
                     /gene="nagZ"
                     /locus_tag="ACFM6C_000990"
     CDS             complement(5559..6644)
                     /gene="nagZ"
                     /locus_tag="ACFM6C_000990"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HFC6158460.1"
                     /translation="MTVPHIPRGPVMADIAAFRLTEEEKQRLLDPAVGGVILFRRNFQ
                     NIVQLKELTAEIKALRTPGLIIAVDHEGGRVQRFIEGFTRLPAMNVLGQIWDSESASA
                     AETAARQIGWVLATELSACGIDLSFTPVLDLDWGNCPVIGNRSFHRNPEAVTRLALAL
                     QKGLEKGGMKSCGKHFPGHGFVEGDSHLVLPEDRRSLSELETADLIPFRGMSREGMAA
                     VMPAHVVYPQVDAKPAGFSEIWLKQILRRDIGFKGVIFSDDLTMEGACGAGGIKERAR
                     LSFEAGCDIILVCNRPDLVDELRDGFTIPDNPDLAGRWQYMANTLGSAAAQAVMQTTD
                     FQAAQAFVAGLASPQDTAGGVKVGEAF"
     gene            complement(6700..8220)
                     /locus_tag="ACFM6C_000991"
     CDS             complement(6700..8220)
                     /locus_tag="ACFM6C_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HFC6158461.1"
                     /translation="MQLIDYSHSFFSVVPPFLALALAVITRRVLLSLGIGILVGVAFL
                     VGGNPVDGLTHLKDMVVGLAWADGDWSLGKPKILVFLILLGIFTSLLTYSGSNQAFAD
                     WAKRHIKNRRGAKMLTACLVFVTFIDDYFHSLAVGAIARPVTDKFKVSRAKLAYILDS
                     TAAPMCVLMPVSSWGASIIATLAGLLVTYKITEYTPMGTFVAMSLMNYYALFALIMVF
                     VVAWFSFDIGSMARFEQAALNETHDETAVSDGSRGRVYALIIPVLVLIASTVSAMIYT
                     GAQASETFSILGAFENTDVNTSLVFGGTCGVLAVVLCTFGTIKTADYPKAVWQGAKSM
                     FGAIAILILAWLISTVVGEMHTGDYLSTLVAGNIHPGFLPVILFLLASVMAFATGTSW
                     GTFGIMLPIAAAMAVKVDPTLIIPCMSAVMAGAVCGDHCSPISDTTILSSTGARCNHI
                     DHVTSQLPYALTVAGAAAAGYLVLGITKSALLGFGTTGIVLAVLIFMLKDKKRTIA"
     gene            complement(8421..9920)
                     /locus_tag="ACFM6C_000992"
     CDS             complement(8421..9920)
                     /locus_tag="ACFM6C_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegQ family serine endoprotease"
                     /protein_id="HFC6158462.1"
                     /translation="MFKKYQYLALAALCAASLAGCDKAGSFFGADKKEASFVERIEHT
                     KDDGSVSMLLPDFAQLVQSEGPAVVNIQAAPAPRTQNGSGNAENDSDPIADNDPFYEF
                     FKRLVPNMPEIPQEEADDGGLNFGSGFIISKDGYILTNTHVVTGMGSIKVLLNDKREY
                     TAKLIGSDVQSDVALLKIDATEDLPVVKIGNPKDLKPGEWVAAIGAPFGFDNSVTSGI
                     VSAKGRSLPNESYTPFIQTDVAINPGNSGGPLFNLKGQVVGINSQIYSRSGGFMGISF
                     AIPIDVAMNVAEQLKNTGKVQRGQLGVIIQEVSYGLAQSFGLDKASGALITKILPSSP
                     AERAGLQAGDIIRSLNGEEIRSSGDLPVMVGAITPGKEVSLGVWRKGEEITIKVKLGN
                     AAEHTGASSKTDEAPYTEQQSGTFSVESAGITLQTHTDSSGGHLVVVRVSDAAERAGL
                     RRGDEILAVGQVPVNDEDGFRKAMDKAGKNVPLLVMRRGNTLFIALNLQ"
     gene            complement(10058..10687)
                     /gene="nth"
                     /locus_tag="ACFM6C_000993"
     CDS             complement(10058..10687)
                     /gene="nth"
                     /locus_tag="ACFM6C_000993"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140078 - class I DNA-(apurinic or
                     apyrimidinic site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HFC6158463.1"
                     /translation="MNRQIRQEIFERFRAANPHPTTELNFNSPFELLIAVLLSAQATD
                     VGVNKATAKLFPIADTPQAMLDLGLDDVMEYTKTIGLYKTKSKHIMQTCRILLEKYNG
                     EVPEDREALESLPGVGRKTANVVLNTAFGHPVMAVDTHIFRVSNRTKIAPGKDVREVE
                     DKLMRFIPKEFLMDAHHWLILHGRYTCKALKPQCQTCIINDLCEYPAKS"
     gene            complement(10733..11146)
                     /locus_tag="ACFM6C_000994"
     CDS             complement(10733..11146)
                     /locus_tag="ACFM6C_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YqaA family protein"
                     /protein_id="HFC6158464.1"
                     /translation="MIPSYTYAALAFSAFTSATLLPGTSEAAFALFVHRFPEHAYGAL
                     LCAGLANGLGSMVSYWMGRLLPSRKMPSEKTLNLMRRFGIWLLAFAWLPVVGDALPLA
                     AGWLRLNPWTSGLMLVIGKTARYAFILWGMQYYAA"
BASE COUNT         2660 a         2990 c         3072 g         2467 t
ORIGIN      
        1 atttagggct aatctagtac agccccttgt tttttcgata cggaaccgga tagaggaaaa
       61 atcgaacatt gcgcctgcct tgctatgatt cacgaagaaa tctccgccat gcctatgggc
      121 tatgaaacct tgatcggcga tatgggcagc gcactgtcag gcggacaaaa acaacgcatc
      181 gtattggcgc gggccttata ttgcgaaccg aaaatcctat ttttagatgc agcgaccagc
      241 catttggata ttgccaatga aaaagcagtc aatgcaaact tgaatggctt gtctatcata
      301 aaaattatgg cggcacacag aaaggaaacg gtggaatcag cagataggaa aatgtcttta
      361 ggataaaaat acagtttcaa aaatactcaa gattgctgct gttttttcgc ctgagcgtca
      421 aactctgcca gcgtcatgtt caaagtctgc aaacacggca tcattactgc atcgacagct
      481 tggttcacat gatccctttc cacaggcaac ggacggtaaa cgaagagctt gaagagttcg
      541 ttcaactcaa tcgaatccgc ccccgttttc aacacccaac cctgtctgcc ggaatagatg
      601 tagccgtgcc gcgccagctt ttccaaaagc tcgcccaact cgtcgtagcc catattgata
      661 tgccgtctga actcctgaac aggcaaggct ttgccttctt tttgcgccgc atccagaagc
      721 agcaggattt tcaacacgtc gtcaaaccgt ccgcgcgagt cgaagcccct gcggaacgct
      781 tctccctgcc agtaggagag tgaagaagtc agcaccgcgc cgcccaagac cagcgtccac
      841 aacaggttca gccacaacag aaaaaacggc acggcggcaa acgcgccgta aatcgagcgg
      901 tagccgtcga aattgcccat ataccaagtg aagagggagc gcgcggtttc cagacaaaac
      961 gctgttgcca aagccccgac aaacgcctgc cgcgcgggaa cgaagcggtt tggcacgaag
     1021 cggtacagcc cccacagcaa aagcgtcatg aaggtcagcg tcgccgccgt tcgcaacgcg
     1081 cccgaccact gcggcgcacc tgaggcaagc gcggcatcct gtaccgagcc gaccataaag
     1141 gaaatgccca cgcccaaaga cagcggcccg aacgtcagta aagcccaata gacgagaaac
     1201 tgcatcatcc acggacgctg ggaattgacc cgccagatgc ggttgaacgt attgtctatc
     1261 gtccgaatca gcatcagcga ggtaacgacc agcatcacgc tgccgattgc cgtcagccgg
     1321 ttcgcctgct cgcggaacgc attgatatag tcgaacacca tgtccgcgcc ctgcggcaca
     1381 atggtttggt tgacgaagga gacgaacgaa tccgaccagc ggtcgaacac ggggaaaatc
     1441 gaagcgaccg ccaccatcac ggtcagcacg gggacgagtg ccagcagcgt cgtaaacgtc
     1501 atgcttgccg ccgcctgcgg tacgcgttct tcatcaaagc ggcggacgac gaaccatgca
     1561 aacgcacaga ttttattgtc tgccaaacct tgcaaacgtt gtaaaaaggt cataatttct
     1621 tgcccggtca gtaagttggg cattgatgcc cgatgttata gccaattttg ccgtcaggaa
     1681 caaatgcctg aactgcggct gtttcagacg gcatcggaac aactgttatg ccgtctgaag
     1741 accgaaccat tttaacggaa tccgcccatg aacccaaatc cccctcaaaa tcctcgtcct
     1801 ctactatttc caaaacggca gcacccgcaa tcccgcccgc cgaatcgctc gcggcatcga
     1861 cagcgttgaa ggttgcgaag ccgtattgcg caccgtcccc aaagtctccg ccgtctgcga
     1921 agccgtcaaa aaagatattc ccgacagcgg ctcccgtcct gaccgccgaa gaaaacaata
     1981 tcgccttcgc acaaagcaaa cgcttggcgg aactcgccat caagtcggca taagccgcgt
     2041 gttcagacgg catggcgttc agatgccgtc tgaacgcgtt tgcctgtata atccgcgtct
     2101 ttactatcca acttcgcggt tcgaaaacct cccgcgtcac caaaactagg attcgatatg
     2161 tcaaaccaaa aagccttggt catcttttcg ggcggtcagg attcgaccac ctgcctgatt
     2221 caggcaatcc aaacctacgg gcgcgaaaac gtccaagcca ttactttcca atacgggcaa
     2281 cgccatgccg tcgagctgga acgtgcccgc tggattgcgc aggatttggg cgtcaaacaa
     2341 accgtactcg acttgagcct gatgcggcag attacgcaca atgccctgat ggacgacacc
     2401 gccgccatcg aaactgccga aaacggcgtt ccgaatacct ttgtagacgg ccgcaacgcg
     2461 cttttcctgc tctatgccgc gatttacgcc aaagggcagg ggatacggca catcatcgcg
     2521 ggcgtgtgcg aaaccgactt ctccggctat cccgactgcc gcgacgtgtt tgtcaaatcg
     2581 atgaacgtta cccttaattt ggcgatggac tatgattttc aaatccacac gccgctgatg
     2641 tatctgacca aggcgcaaac ttgggcgttg gcggacgaaa tgggcgtgct ggactatatc
     2701 cgcgagcaaa cccacacctg ctataacggc atcgtcggcg gctgccgcga atgcccgagc
     2761 tgtatcttgc gcgaacgcgg gctggcggaa tatctggaaa gtaaaaaggc cgtctgaaca
     2821 cgcgcaaacc ataaggaata cgatatgccc aagctccata tgttttacct cggcggcaat
     2881 gccggcaggt cgaatatcga agtgcacgac atccaatttg ctgtgtgcga cgactaccgt
     2941 gaagccgtcc ccgcactcaa agccgcgtgg ttcggcgatg cggacaaaat ccacatcgac
     3001 ggctggcagg ttgtcgaatg ggcggacggt tacgacatcg ccgtatccga aacgcccaaa
     3061 acgaaaatgc cgtctgaaaa cgccccgcgc ttgtattttg ccaatgtcgg cggctatcgc
     3121 gcagggcagc tcgccgaagc gcacgctttt gggctgttcg ccgccgccac gcctgccgaa
     3181 gccaaacaaa aagccctgca aaccctgttg accgacagct atgttcagca acataaagac
     3241 aacttaaaag acgtggacaa cctgcttgcg ctcgaccgca tcggcaattt ccatatccgc
     3301 ctgaccccga atccgcacgg caagcctgcc gaaatcggct ttcagggcta tttgcccatt
     3361 tgagaaccca tgaaaatcac caaaatcttc accttcgact cctcgcatat gctcgacggg
     3421 catgacggca aatgccaaaa cctgcacggg catacctaca aactcgaaat caccgtttca
     3481 gacgaccccg tcagaggcgg gccgaaagac ggtatggtga tggactttac cgacttgaaa
     3541 gccattgtca aacaacacat taccgacccc ttcgaccacg ccttcatcta ccacggcggc
     3601 aacgggcgcg aatctcaaat cgccgcactc ttggaaggct ggaacatgaa aaccctgcgc
     3661 ctgccctgcc gcaccactgc cgaaaatatg gcggtcgaaa tgtacgaccg tctgaaaaac
     3721 gcggggctga acgtgtgccg cgtcaaattg tgggaaacgc cgacatcgtg tgcggagtat
     3781 gaaggggagt agggaatatc ttgaacgtat cgatatagta aattccaata agacatgccc
     3841 aaccgcgtca ttcccgcgca ggcgggaatc cagaccttga tttatcagga atatttaaaa
     3901 attgcagcaa ttccaactct ctggattccc gcctgcgcgg aaaggacggt ttagagcgtc
     3961 cttatttgaa tttaccgtaa aacggttttt tctcctgtac ggattccccg ttttttcaga
     4021 cgaccttcca tatcaaatac acccattaaa aggaataccc atgaaactcc tcttcatccc
     4081 cctagtcctc ttcgtcgccg ccgaacattt ctacatcgcc tggcttgaaa tgacgcagat
     4141 tcccagcgaa aaagcggcgg aaacgttcaa gctgccttat gaatttatgg aacaaaatcg
     4201 cgtgcagacc ctgttcggca accaagggct gtataacggc tttctcggca tcgggctggt
     4261 gtggtcgcgg tttgccgcgc cggataacgc ggtgtacggc gcgacggtac tgtttctcgg
     4321 cttcgtcctg attgccgccg cgtggggcgc gttctcttcc ggcaacaaag gcatactcgt
     4381 caaacaaggt ttgcccgcat ttttggcagc ggcggcggtg ttggcggtat gaaaaaaatc
     4441 aatgttgccc ccgaaaatcc ccaataccgc atcgtcgaaa tctttgaaag cctgcaaggc
     4501 gaaggctgga acacgggcat acccgccgtt ttcgtccgct tgggcaaatg caacctcgcc
     4561 tgcggctggt gtgataccga ttatttgaca ttcggcatga tgagcctgtc cgacatctta
     4621 ggctgtctga aaacctatgc cgcccgcaac atcatcatca ccggcggcga accgaccata
     4681 cagccgcatc tcgatatgct gctggacatg ctcaaggcgg aaggttattt cctctgtatc
     4741 gaaaccaacg gactcaatcc cgcgccgccg caaatcgact atgtcgccac cagccccaaa
     4801 gcctgctatg ccgccaaata cgaaaaaagc tgtatcgaaa cagccgacga agtgcggatt
     4861 gttgccgacg gcgatgtcgt tgcgttctgt gaaaatatgg aacgcaaaat ccgtgcgcat
     4921 cattactacc tttcgccctg cgaacaaaac ggtgcaatga acatctacga caccatccgc
     4981 caaatcggta ttctgaacag ccgccccgac gcgccggtgc attggcagtt gagcgtgcag
     5041 acgcacaaat gggcgggaat agagtagttt aagcagtgta actcaaaggg acggcgtacg
     5101 gttttaccga tgtttgacat acggggaaag tgtgccgctt ctgcgtggaa atgccggcat
     5161 ttccaccgcc caatcaggac ggagccttac tgaataagat gctgccgttg ggtacaagct
     5221 cggcttccta aattccgatg gtcttttgaa ccttgccgat accctttgtc ggcgcacgca
     5281 aatggcaggg ttggggaaaa cgaaatgccg tctgaaacag aatgctgttt cagacggcat
     5341 ttttctgttg ccgccaaaag gaaaaaccgc cccggcaatg gataccgagg cggtttggat
     5401 ttggtcggaa tgagaggatt cgaacctccg accccttcgt cccgaacgaa gtgcgctacc
     5461 gggctgcgct acattccgaa tgaattggaa cgggattata acgtaaaaag agcggcatgc
     5521 ctataccgtt ttgccttttt gccgcgtgtc gggaggattt aaaaggcctc tccgactttc
     5581 acgccgcccg ccgtgtcttg cggcgaggcc agaccggcaa caaaggcttg cgccgcttgg
     5641 aaatccgttg tctgcatcac ggcttgcgcg gcggcactgc cgagcgtgtt ggccatgtat
     5701 tgccaacgtc cggccaaatc cgggttgtcg ggaatggtga aaccgtcgcg caattcatcg
     5761 accaagtcgg gacggttgca gaccaatatg atgtcgcaac ctgcttcaaa cgacagtcgg
     5821 gcgcgttctt tgataccgcc agccccgcac gcgccttcca tggtcaaatc gtcagagaaa
     5881 attacgcctt tgaatccgat atcgcggcgc aaaatttgtt tgagccagat ttcggaaaac
     5941 cctgcgggct tggcatccac ttgcggataa acgacgtggg caggcatgac cgctgccata
     6001 ccttcccggc tcatgccgcg gaaggggata aggtcggcgg tttcgagttc ggacaggctg
     6061 cgcctgtctt ccggcaagac cagatggctg tctccttcga caaatccgtg tccgggaaaa
     6121 tgtttgccgc atgatttcat gccgcctttt tccaaacctt tttgaagggc gagggcaagg
     6181 cgggttacgg cttcggggtt acggtggaaa ctgcggttgc cgatgacggg gcagtttccc
     6241 cagtccaaat ccaagacggg agtgaaggac aagtcgatgc cgcaggcgga aagttcggtt
     6301 gccaaaaccc agcctatctg ccgggctgcg gtttcggcgg cagatgcgct ttcgctgtcc
     6361 caaatttgcc ctaagacgtt cattgcgggc aagcgggtaa agccttcgat aaaccgttga
     6421 accctgccgc cttcgtgatc gacggcaata ataagcccgg gtgtgcgcag ggctttgatt
     6481 tcggcggtaa gttctttgag ctgtacgata ttttggaagt tgcggcgaaa caggatgact
     6541 ccgccgacgg cgggatcgag aaggcgttgc ttttcctctt cggtcagacg gaaggcggca
     6601 atgtcggcca ttacggggcc gcgcggaata tggggaacag tcatttcggt ttgctccaaa
     6661 aagcttcaga cggcatatgc cgtctgaaaa ggggggaaat caggcgatgg tgcgtttttt
     6721 atctttcaac atgaaaatca gcaccgccaa tacaatgccg gtcgtgccaa agcccaacag
     6781 cgcggatttg gttatgccca aaacaagata accggccgct gctgcacccg ctacggtcag
     6841 ggcatagggc agttgcgagg taacgtggtc gatatggttg cagcgcgcgc cggtggaaga
     6901 caggatggtc gtgtcggaga tgggcgaaca gtggtcgccg cataccgccc cagccattac
     6961 tgcggacatg cacgggataa tcagcgtggg atcgactttg accgccattg ccgcggcaat
     7021 cggcagcatg atgccgaatg ttccccaact tgtgccggtg gcaaacgcca ttacgctggc
     7081 gagcaggaag aggatgacgg gcaggaagcc gggatggatg ttgcccgcaa ccagtgtgga
     7141 gaggtaatcg ccggtgtgca tttcgccgac aaccgtactg atgagccaag cgaggattaa
     7201 aatggcgatt gcgccgaaca tagatttcgc accctgccaa acggctttgg gataatcggc
     7261 ggttttaatc gtgccgaacg tgcagaggac gacggcaagc acgccgcaag tgccgccgaa
     7321 taccagcgaa gtgtttacgt ccgtattttc aaatgccccc aaaatgctga aggtttcgct
     7381 tgcctgtgcg ccggtataga tcatggcgga tacggtggag gcgattaaga ccaaaacggg
     7441 aataatcaat gcgtaaaccc tgcccctgct gccgtctgaa acggcggttt catcatgggt
     7501 ttcgttcaaa gcggcttgtt cgaaacgtgc catcgagccg atgtcgaagg aaaaccatgc
     7561 gacgacgaac accataatca gggcaaacag cgcgtaatag ttcatcaggc tcatggcgac
     7621 aaatgtcccc atcggcgtgt attcggtaat tttgtaggta acgagcaatc cggcaagtgt
     7681 cgcgataatc gacgcgcccc aacttgaaac gggcatcagc acgcacatag gcgcggcagt
     7741 ggagtcgagg atgtaggcga gtttggcgcg ggaaacttta aacttgtcgg taacggggcg
     7801 ggcaatcgca ccgacggcga gactatggaa atagtcgtcg atgaaggtaa cgaatacgag
     7861 gcaggcggtc agcatttttg cgccgcgtcg gtttttaatg tgccgttttg cccagtcggc
     7921 aaacgcctga ttgctgccgg agtaggtcag cagggaagtg aaaatgccca aaagtatcag
     7981 gaaaactaag atttttggtt tgcccagcga ccaatcgccg tctgcccaag ccaagccgac
     8041 gaccatgtct ttcaggtgtg tcagaccgtc gacggggttg ccgccgacca aaaaggcaac
     8101 gccgaccaaa attccgatgc ctaaagacag cagtacgcgg cgggtaatga cggcaagtgc
     8161 cagtgccaaa aagggtggca caaccgagaa aaatgaatgt gaatagtcga tcagctgcat
     8221 ggtttatggg ggtgttaagc gtccggatgg gagggtatct gtccgcctcc ggtttgggtt
     8281 ttgttggcaa aatgggcgga aatatttttg tcgtaaaaaa tatttgttta aaatcaaaca
     8341 accgattttt taaaatgccc attaatcgat attgatgggc attttatcat ttaaaaaata
     8401 ttttggttaa attatgtgtg ttattgcagg tttaatgcga taaacagcgt gttgccacgg
     8461 cgcatgacca gcagggggac gtttttgccc gccttgtcca tagctttgcg gaaaccgtct
     8521 tcgtcattga cggggacttg cccgacggca agaatttcgt cgccgcgcct caagcctgcg
     8581 cgttctgccg cgtcggaaac ccgtacgacg acgaggtgtc cgccgctgct gtcggtatgt
     8641 gtctgaaggg taatgcctgc ggattcaacc gagaacgtac cggattgctg ttcggtgtag
     8701 ggggcttcat ctgttttgga tgatgcgccg gtatgctcgg cagcgttgcc cagcttgact
     8761 ttgattgtaa tttcttcgcc tttgcgccat acgccgaggc tgacttcttt tcctggtgta
     8821 atggcaccga ccataacggg aaggtctccg gaagaacgta tttcttctcc gttgagactg
     8881 cgtatgatgt cgcctgcctg caagcctgca cgttctgcgg ggctgctggg aaggattttg
     8941 gtaatcaatg cgccgctggc tttatccaga ccgaaggact gtgccaaacc gtaggatact
     9001 tcttgaataa tcacgcccag ttgcccgcgt tggactttgc cggtgttttt cagctgttcg
     9061 gcaacattca tggcaacgtc aatcgggatg gcaaaggaaa tgcccataaa tccgccgctg
     9121 cggctgtata tttgcgagtt gatgccgacg acctgtcctt ttaagttgaa cagcggaccg
     9181 ccggagttgc ccggattgat ggcgacatcg gtttggatga agggggtgta gctttcgttg
     9241 ggcaggcttc tgcctttggc ggacacaatg ccggaggtaa cgctgttgtc gaagccgaag
     9301 ggtgcgccga tggcggctac ccattcgccg ggtttcaaat ctttgggatt gccgattttg
     9361 acgacaggga ggtcttccgt tgcgtctatt tttaaaagcg ccacgtcgga ttggacatcc
     9421 gagccgatga gtttggcggt atattcgcgc ttgtcgttga gcaggacttt gatactgccc
     9481 atgccggtaa cgacgtgcgt attggtcagg atgtagccgt ctttgctgat gatgaagccg
     9541 gagccgaagt tcaatccacc gtcatctgct tcttcttggg ggatttcggg catattcggg
     9601 acgaggcgtt tgaaaaattc gtagaatggg tcgttgtcgg caatcgggtc ggaatcgttt
     9661 tcggcattgc cgctgccgtt ttgggtgcgc ggggcggggg ctgcctgaat attgacgact
     9721 gccggacctt cactttgaac cagttgggca aagtcgggca gcagcatact gacgctgccg
     9781 tcgtctttgg tgtgttcgat gcgttctacg aaggatgctt cttttttgtc cgcaccgaaa
     9841 aagctgcctg ccttgtcgca gcctgccagc gaggcggcac acagtgctgc caaagcgagg
     9901 tattggtatt ttttgaacac gtttcgtcct ttgtttcgta ccgatattga cttcaatgcc
     9961 gtctgaaacg cacgttgtcg gtttcagacg gcatggagtg aaattttaca acgtccgtcc
    10021 gaattttcaa gcatttcatt ttgaagggcg gcggcggtca ggatttggcg ggatattcgc
    10081 acaaatcgtt gatgatgcag gtttggcatt gcggtttgag tgccttgcag gtgtagcgtc
    10141 cgtgcaaaat cagccagtgg tgcgcgtcca tcaggaactc tttaggaatg aagcgcatca
    10201 gtttgtcttc gacttcgcgc acatctttcc cgggagcgat tttggttcgg ttggacacgc
    10261 ggaaaatatg cgtatcgacc gccataacgg ggtgtccgaa cgctgtgttc aataccacgt
    10321 ttgccgtttt gcgccccacg ccaggcaatg attccaaagc ctcgcggtct tccggcactt
    10381 cgccgttgta tttttccagc aggatgcggc aggtctgcat gatgtgtttg gacttggttt
    10441 tatacaaccc gatggttttc gtgtattcca tcacgtcgtc caagcccaaa tccagcatcg
    10501 cttgcggcgt atcggcaatc ggaaacagct tcgccgtcgc cttgtttacg ccgacatcgg
    10561 tcgcctgcgc cgacagtaaa acggcgatta aaagctcgaa aggggagttg aaattcagct
    10621 cggtggtcgg atgggggttg gcggcgcgga aacgctcgaa gatttcttgg cggatttgtc
    10681 tgttcatttt tttgtgcagt cggtttgtgc ggtcggcatt ataacgcacg gttcaggcgg
    10741 cgtaatattg cattccccac agaatgaagg cgtaacgcgc cgttttgccg ataaccagca
    10801 tcagcccgct tgtccacgga ttcaaccgca gccagccggc ggcaagcggc agtgcgtcgc
    10861 cgacgacggg cagccaggca aacgcaagca gccaaatacc gaaacgccgc atcagattca
    10921 gtgttttttc agacggcatt tttcgggagg gcagcaaacg ccccatccaa taggaaacca
    10981 tactgcccaa tccgttggca aggccggcgc acagcaacgc gccgtatgcg tgttcgggaa
    11041 agcggtggac gaacagggca aaggcggctt cggatgtgcc gggcaggagg gtggcggaag
    11101 tgaaggcgga aaaggcgagg gcggcgtagg tgtaggaggg tatcattgca aacagtctca
    11161 aacaggcaaa aatcggcgac ggattgtac
//
LOCUS       DAXHPV010000050        11081 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.050, whole genome shotgun sequence.
ACCESSION   DAXHPV010000050 DAXHPV010000000
VERSION     DAXHPV010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11081)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11081)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11081
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.050"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(68..1624)
                     /gene="dnaA"
                     /locus_tag="ACFM6C_000995"
     CDS             complement(68..1624)
                     /gene="dnaA"
                     /locus_tag="ACFM6C_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HFC6158465.1"
                     /translation="MTLAEFWPLCLRRLHDMLPQGQFAQWIAPLTVGEEGGVWVVYGK
                     NQFACNMLKSQFAGKIEAVREELAAGRSAFVFKPGEGVRYEMAAVEGAVEPAEPSLHA
                     GSEEMPVQEVLLDELPSEEPVKPAVSKTAADILAERMKNLPHEPRQAAGSASRPESAA
                     VAKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPF
                     FLYGSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQY
                     KQYDLLIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKS
                     RFSWGLTLELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNR
                     VGASSRFMNRPVIDIDLARTALQDIIAEKHKVITADIIIDAVAKYYRIKISDVLGKKR
                     TRNIARPRQVAMSLTKELTTLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQD
                     YEKLLILIQN"
     gene            1917..2051
                     /gene="rpmH"
                     /locus_tag="ACFM6C_000996"
     CDS             1917..2051
                     /gene="rpmH"
                     /locus_tag="ACFM6C_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003816025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HFC6158466.1"
                     /translation="MKRTYQPSVTKRKRTHGFLVRSKTRGGRAVLAARRAKGRKRLAV
                     "
     gene            2054..2419
                     /gene="rnpA"
                     /locus_tag="ACFM6C_000997"
     CDS             2054..2419
                     /gene="rnpA"
                     /locus_tag="ACFM6C_000997"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004526 - ribonuclease P activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HFC6158467.1"
                     /translation="MDYRFGRQYRLLKTDDFSSVFAFRNRRSRDLLQVSRSNGNGLDH
                     PRIGLVVGKKTAKRANERNYMKRVIRDWFRLNKNRLPPQDFVVRVRRKFDRATAKQAR
                     AELAQLMFGNPATGCRKQA"
     gene            2485..2712
                     /gene="yidD"
                     /locus_tag="ACFM6C_000998"
     CDS             2485..2712
                     /gene="yidD"
                     /locus_tag="ACFM6C_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HFC6158468.1"
                     /translation="MNFLLSKLLLGLIRFYQYCISPLIPPRCRYTPTCSQYAVEAVKK
                     YGAFKGGRLAIKRIARCHPFGGHGHGHDPVP"
     gene            2885..4522
                     /gene="yidC"
                     /locus_tag="ACFM6C_000999"
     CDS             2885..4522
                     /gene="yidC"
                     /locus_tag="ACFM6C_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0032977 - membrane insertase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HFC6158469.1"
                     /translation="MDFKRLTAFFAIALVIMIGWEKMFPTPKPVPAPQQTAQKQAATA
                     SAEAALAPATPITVTTDTVQAVIDEKSGDLRRLTLLKYKATGDETKPFVLFGDGKEYT
                     YVAQSELLDAQGNNVLKGIGFTAPQKQYSLNGDKVEVRLSAPETNGLKIDKVYTFTKG
                     SYLVNVRFDIANGSGQTANLSADYRIVRDHSEPEGQGYFTHSYVGPVVYTPEGNFQKV
                     SFSDLDDDAKSGKSEAEYIRKTPTGWLGMIEHHFMSAWILQPKGGQSVCAAGDCRIDI
                     KRRNDNLYSTSVSVPLAAIQNGAKSEASINLYAGPQTTSVIANIADNLQLAKDYGKVH
                     WFASPLFWLLNQLHNIIGNWGWAIVVLTIIVKAVLYPLTNASYRSMAKMRAAAPKLQA
                     IKEKYGDDRMAQQQAMMQLYTDEKINPLGGCLPMLLQIPVFIGLYWALFASVELRQAP
                     WLGWITDLSRADPYYILPIIMAATMFAQTYLNPPPTDPMQAKMMKIMPLVFSVMFFFF
                     PAGLVLYWVVNNLLTIAQQWHINRSIEKQRAQGEVVS"
     gene            complement(4603..5316)
                     /locus_tag="ACFM6C_001000"
     CDS             complement(4603..5316)
                     /locus_tag="ACFM6C_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HFC6158470.1"
                     /translation="MMSPVLYLIPTPLGTPDTPCLLPHEQQAVVGLTDFVVEAEKTAR
                     AHLKHLGVTMPIRELNLQTLNEHTDLKTLPELLKPLQEGRSMGIVSEAGCPAVADPGA
                     NLVALAHKHGFEVRPLVGPSSLLLALMASGANGQSFAFKGYLPSEKNERIQSLKALEQ
                     RSRQQNETQLFIETPYRNDVLLADAVENLHPETRLCTATDLTLPTQEIISQTVVQWRK
                     RKEMPNLKKRPTIFVMYAG"
     gene            complement(5375..5965)
                     /locus_tag="ACFM6C_001001"
     CDS             complement(5375..5965)
                     /locus_tag="ACFM6C_001001"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA];
                     GO_process: GO:0009117 - nucleotide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphatase"
                     /protein_id="HFC6158471.1"
                     /translation="MGLELPLILGTSSVFRREQMERLGIAFQAASPDFDETPMLGESA
                     PQTALRLAEGKARSLAGRFPEALIVGADQVAWCDGRQWGKPMNLANAQKMLMHLSGRE
                     IEFYSAVVLLNTVTGRMQRHIDKTVVVMRKLDELHILRYLEREPDAVYCSCALKSEAL
                     GALLIERIESSDPNALIGLPVFRLVDFLKNEGVEVL"
     gene            6113..6616
                     /locus_tag="ACFM6C_001002"
     CDS             6113..6616
                     /locus_tag="ACFM6C_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003776445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HFC6158472.1"
                     /translation="MSDPNLIDPEIFAAEGQNLQGSFLLEELDERVSSHDYPADRQTK
                     ISFTLTGGRDRLQRLFLDLNVKADMPLICQRCIKPMPFMLDESSRIVLFSNEESLDES
                     MLADEELEGILIEKELDVRTLVEDQILMSLPFSPRHEDCGDNGTLEEVNRDKPNPFAV
                     LAGLKSS"
     gene            6650..6829
                     /gene="rpmF"
                     /locus_tag="ACFM6C_001003"
     CDS             6650..6829
                     /gene="rpmF"
                     /locus_tag="ACFM6C_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011765354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HFC6158473.1"
                     /translation="MAVQQNKKSPSKRGMHRSHDALTAPALSVDSTTGEVHRPHHISP
                     NGMYRGRKVVKAKGE"
     gene            7004..7531
                     /locus_tag="ACFM6C_001004"
     CDS             7004..7531
                     /locus_tag="ACFM6C_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HFC6158474.1"
                     /translation="MKQKIWYTYDDIHRVIKALAEKIRNADIKYDAMIAIGGGGFIPA
                     RMLRCFLEIPIYAVTTAYYDSDNEGQVTEEVKKVQWLDPVPEALRGKNVLVVDEVDDS
                     RVTMEFCLTELLKEDFGTIGVAVLHEKIKAKAGKIPEGIPYFSGITVEDWWINYPWDA
                     LDIDEHNRLAEAGRG"
     gene            7619..8674
                     /gene="plsX"
                     /locus_tag="ACFM6C_001005"
     CDS             7619..8674
                     /gene="plsX"
                     /locus_tag="ACFM6C_001005"
                     /EC_number="2.3.1.274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043811 - phosphate:acyl-[acyl carrier
                     protein] acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HFC6158475.1"
                     /translation="MITLAVDAMGGDQGLAVTVPGATAFLQAHPDVRLIMTGDETQLR
                     QALTAAGAPMERIDICHTTQVVGMDEAPQSALKNKKDSSMRVAINQVKEGKAQAAVSA
                     GNTGALMATARFVLKTIPGIERPAIAKFLPSDTDHVTLALDLGANVDCTPEQLAQFAV
                     IGSELVHALHPQKGQPRVGLVNVGTEDIKGTDTVKQTYKLLQNSKLNFIGNIESNGIL
                     YGEADVVVADGFVGNVMLKTIEGAVKFMSGAIRREFQSNLFNKLAAVAALPALKGLKN
                     KLDPRKFNGAILLGLRGIVIKSHGGTDETGFRYALEEAYHEAKSAGLSKIEQGVAEQL
                     AALETAKAVQNENADGL"
     gene            8810..9061
                     /locus_tag="ACFM6C_001006"
     CDS             8810..9061
                     /locus_tag="ACFM6C_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MafI family immunity protein"
                     /protein_id="HFC6158476.1"
                     /translation="MKTLEKRMKALDKRIMKFEKSLEGRLDARLIESALDYIHYSERF
                     LAFEILCTYIEDFDVRLTEQESREISFINKEFEIESTSD"
     gene            9088..9504
                     /locus_tag="ACFM6C_001007"
     CDS             9088..9504
                     /locus_tag="ACFM6C_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158477.1"
                     /translation="MKTSTVVFGGFFMADNGERIQIPVLENPDIREINHFFSVSNFEK
                     KAGVLVFRIIPEPEFGHTELTVYFEKGYYLPMIQTILEGGDIEVKNLKTENYSGKARE
                     ILGDSYPIEHTSKNISTIQNIISEFMIQKQTPAPII"
     gene            9524..9727
                     /locus_tag="ACFM6C_001008"
     CDS             9524..9727
                     /locus_tag="ACFM6C_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158478.1"
                     /translation="MPSEAAWAFRRHFLRLKQHIGNPAPPVHGNLHLKTICMPNHTPI
                     PISVICTLPVLGNHRFFAYNSRI"
     gene            9754..10716
                     /locus_tag="ACFM6C_001009"
     CDS             9754..10716
                     /locus_tag="ACFM6C_001009"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HFC6158479.1"
                     /translation="MQYAKISGTGSYLPANRVSNDDLAQKVDTSDEWITARTGIKFRH
                     IAAENEKTSDLAAEAARRALDAAGLDSGEIDLIIVATATPDMQFPSTATIVQQKLGIT
                     NGCPAFDVQAVCAGFMYALTTANAYIKSGMAKNALVIGAETFSRIVDWNDRTTCVLFG
                     DGAGAVVLSASDTPGIIHSKLKADGNYLKLLNVPGQIACGKVSGSPYISMDGPGVFKF
                     AVKMLSKIADDVIEEAGYTAAQIDWIVPHQANRRIIESTAKHLGLSMDKVVLTVQDHG
                     NTSAASIPLALDTGIRSGQIKRGQNLLLEGIGGGFAWGAVLLQY"
     gene            10763..>11081
                     /locus_tag="ACFM6C_001010"
     CDS             10763..>11081
                     /locus_tag="ACFM6C_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HFC6158480.1"
                     /translation="MKRQAFFKLMACAAFLSAVSLRLPVLGACYAILSLYAFALYGID
                     KRRAVRGKRRIPEHRLLLPALFGGWAGAYLGSRIFRHKTAKKRFVVLFRLTVSGNVLA
                     TLIL"
BASE COUNT         2853 a         3320 c         2568 g         2340 t
ORIGIN      
        1 ttaatccgct atatctttac ccttcggacg gcatgggcaa tatcatgtcg tctgaaaacg
       61 ttttccatca gttttgaatc agaatcagca gcttttcata atcctgagcc aattccggat
      121 cttcttcgcg cagtttcgcc actgccctga tgccgtgcat aacggtcgta tggtcgcgtc
      181 cgccgaacga atcgccgata gacggcaggc tcaaagtggt cagttctttg gtcaggctca
      241 tcgccacctg gcgcggacgg gcaatgtttc gtgtccgttt cttaccgagc acatcgctga
      301 ttttgatgcg gtaatatttc gccaccgcat cgatgatgat atcggcggtg atgactttgt
      361 gcttctcggc aataatgtcc tgcaaagcgg tacgcgccaa atcgatgtcg atgacgggac
      421 ggttcataaa gcggctgctc gctccgacgc ggttgaacgc gccttcaagc tcacgcacgt
      481 tggaacggat cagattggca atgaacagcg cggcttcgtc ttcaatactg atgcccgccg
      541 cttccgcctt tttctgcaaa atggcgatac gcatttccaa ttcgggcggc tcgagttcca
      601 aagtcagtcc ccatgaaaaa cgggatttga ggcggtcgtc cataccttcg attttggcgg
      661 gtaaaacatc gcaagtgagg atgagctgtt ttttctcgtt gtggaaatgg ttgtacagat
      721 agaagaattc ctccatcgta cggtcttttc ctttaataaa ctgaatatcg tcgataatca
      781 gcaggtcgta ttgcttgtat tgctgcttga acacgtcgta ggtattgttg cgaaccgcct
      841 tcataaaact gcggatgtag tcgtccgaat gcatatagcg cactttggca tcgggacggt
      901 ttttcaacag ttcgttgccg accgcctgca caaggtgggt tttacccaaa cccgtactgc
      961 catagaggaa gaacgggttg taactctgcc ccgggctttc cgcaatcgcc tgcgccgccg
     1021 ccgccgcaag gcggttgccc ttgccttcga ccaatgtgtc gaacgtataa tccggcgaca
     1081 gattggtctg ctcgtaacgc gcctcttccg catcgcgctg tgcatccgtc cgtgctttgg
     1141 caactgccgc cgattccggc cgggaagcag acccggcagc ctgacgcggc tcgtgcggca
     1201 ggtttttcat acgttctgcc aaaatatccg ccgccgtttt cgacacagcg ggtttgacag
     1261 gctcttcaga cggcagctcg tccaacagaa cctcctgcac aggcatctcc tccgaccccg
     1321 cgtgcaagga cggctcggca ggttcgacag caccttcaac cgccgccatc tcataacgta
     1381 cgccttctcc cggtttgaat acgaaggcgg aacggccggc agccaactct tccctcaccg
     1441 cttctatttt tccggcaaac tggctcttga gcatattgca ggcaaactga ttcttgccgt
     1501 acaccaccca tacgccaccc tcctcaccga cggtaagggg cgcaatccat tgcgcaaact
     1561 gcccttgagg caacatatcg tgaagacggc ggaggcacag cggccaaaac tctgctaatg
     1621 tcatggataa gctcgaatcg gtaaaaatga aatcgaaaac aaagaaaata taatattttc
     1681 aaaaagaaaa caaatctgtt gaacacacat cggttcaaaa tgcagcgaac cgaattatac
     1741 cgactcgccg atattttatc cacaacccgt gcaaaattta tccacagaaa ggcggcagaa
     1801 atccgcaggc aatcgggcaa tcctcctgca aagtttctat attgattgac aaaagcggca
     1861 aattggagtg taattcacgg tttaattatc tacccattct atttttagga aacatcatga
     1921 aacgcactta tcaaccttcc gttaccaaac gcaaacgcac ccacggcttc ctggtgcgct
     1981 ccaaaacacg cggcggccgc gcagtattgg ccgcacgccg tgccaaaggc cgcaaacgcc
     2041 tggcggtata attttggact accgcttcgg aaggcagtac cgcttgttaa aaacggatga
     2101 tttttcatcc gtttttgcat tcagaaaccg ccgcagccgc gacctgctgc aagtttcgcg
     2161 ttcaaacggc aacgggctgg accatccccg catcggtctg gtggtcggca aaaaaaccgc
     2221 caaacgcgcc aacgaacgaa attatatgaa gcgcgtcatc cgcgactggt tcagattgaa
     2281 caaaaaccgg ctgccgccgc aggatttcgt cgtgcgcgtc cgccgtaaat tcgacagggc
     2341 taccgcaaaa caggcaaggg cggaactggc acaactcatg ttcggcaacc ccgcaaccgg
     2401 atgcaggaaa caggcatgat cagaacggta ctctgcaggc aaggttcaga cggcaacggg
     2461 tttcccatac taaggaacat cccgatgaac ttcctattgt ccaaactcct gctgggactg
     2521 atacggttct accaatattg catcagcccg ctgattccgc cgcgctgccg ttatacgccg
     2581 acctgttcgc aatacgcggt cgaagcggtc aaaaaatacg gcgcattcaa aggcggtcgg
     2641 ctcgccatca agcgcattgc acgctgccac cctttcggcg gacacggaca cggacacgac
     2701 cccgttccct gacccgacgc aatattcaaa ttgcacgctt tccttttatt tcccatcggt
     2761 ttctatataa tgccgtctga accttcgggc tggcggcacg accgtcgggt atgaagcccg
     2821 cccttattcc ccgtctatcg gaacacgcaa cctgcggcat ttccgaccat tcaggaaact
     2881 ctatatggat tttaaaagac tcacggcgtt tttcgccatc gcgctggtga ttatgatcgg
     2941 ctgggaaaaa atgttcccca ccccgaaacc cgtccccgca ccccaacaga cggcacaaaa
     3001 acaggcagca accgcttccg ccgaagccgc gctcgcgccc gcaacgccga ttaccgtaac
     3061 gaccgacacg gttcaagccg tcattgatga aaaaagcggc gacctgcgcc ggctgaccct
     3121 gctcaaatac aaagcaaccg gcgacgaaac caaaccgttc gtcctgtttg gcgacggcaa
     3181 agaatacacc tacgtcgccc aatccgaact tttggacgcg caaggcaaca acgttctgaa
     3241 aggcatcggc tttaccgcac cgcaaaaaca atacagcctc aacggcgaca aagtcgaagt
     3301 ccgcctgagc gcgcccgaaa ccaacggact gaaaatcgac aaagtctata ccttcaccaa
     3361 aggcagctat ctggtcaacg tccgcttcga catcgccaac ggcagcggtc aaaccgccaa
     3421 cctgagcgcg gactaccgca tcgtccgcga ccacagcgaa cccgagggtc aaggctactt
     3481 tacccactct tacgtcggcc ctgttgttta tacccctgaa ggcaacttcc aaaaagtcag
     3541 cttctccgac ttggacgacg atgccaaatc cggcaaatcc gaggccgaat acatccgcaa
     3601 aaccccgacc ggctggctcg gcatgattga acaccacttt atgtccgctt ggattttgca
     3661 gcctaaaggc ggacaaagcg tttgcgccgc tggcgactgc cgtattgaca tcaaacgccg
     3721 caacgacaac ctgtacagca ccagcgtcag cgtgccttta gccgctatcc aaaacggcgc
     3781 gaaatccgaa gcctccatca acctctacgc cggcccgcag accacatccg tcatcgcaaa
     3841 catcgccgac aacctgcaac tggcaaaaga ctacggcaaa gtacactggt tcgcttcccc
     3901 actcttctgg ctcctgaacc aactgcacaa catcatcggc aactggggct gggcaatcgt
     3961 cgttttgacc atcatcgtca aagccgtact gtatccattg accaacgcct cttaccgctc
     4021 tatggcaaaa atgcgtgccg ccgcacccaa actgcaagcc atcaaagaga aatacggcga
     4081 cgaccgtatg gcgcaacaac aggcgatgat gcagctttac acagacgaga aaatcaaccc
     4141 gctgggcggc tgcctgccta tgctgttgca aatccccgtc ttcatcggat tgtattgggc
     4201 attgttcgcc tccgtagaat tgcgccaggc accttggctg ggttggatta ccgacctcag
     4261 ccgcgccgac ccctactaca tcctgcccat cattatggcg gcaacgatgt tcgcccaaac
     4321 ttatctgaac ccgccgccga ccgacccgat gcaggcgaaa atgatgaaaa tcatgccgtt
     4381 ggttttctcc gtcatgttct tcttcttccc tgccggtctg gtattgtact gggtagtcaa
     4441 caacctcctg accatcgccc agcaatggca catcaaccgc agcatcgaaa aacaacgcgc
     4501 ccaaggcgaa gtcgtttcct aaatgccgca gcatgaaaaa tgccgtctga aacctgttca
     4561 gacggcattt ttattgctca ccccctatcg gggcggaaat cttcaacctg catacatcac
     4621 aaaaatcgtc gggcgttttt tcagattggg catttctttt ctttttcgcc actgcacaac
     4681 cgtctggctg atgatttcct gagtcggcaa cgtcaaatcc gtagccgtgc acaagcgcgt
     4741 ttcaggatgc aggttttcca ccgcatccgc caacaacaca tcgttgcgat acggcgtttc
     4801 gataaacagc tgcgtttcat tctgctggcg cgaacgttgc tccaaagcct tcaaactctg
     4861 aatccgctcg tttttttcag acggcagata acccttaaac gcaaaactct gcccgttcgc
     4921 acccgaagcc atcaaagcca gcagcaggct ggaaggccca accagcggac gcacttcaaa
     4981 accgtgttta tgcgccaaag ccaccagatt cgcacccgga tcggcaacag ccgggcaacc
     5041 cgcctcgctg acaatgccca tactgcgccc ttcttgcaaa ggtttcagca attccggcaa
     5101 agtcttcaaa tccgtgtgtt cattcagcgt ttgcaaattc agttcgcgga taggcattgt
     5161 cacgcccaaa tgtttcaaat gcgcgcgcgc cgttttttcc gcttccacga caaaatccgt
     5221 cagtccgaca accgcctgct gttcgtgcgg caacaggcac ggcgtgtcgg gcgtgcccaa
     5281 aggcgtagga atcaaataca aaacaggaga catcattccc tcactcgtca gttaaaaatg
     5341 ccgtccgaac ccttcagacg gcataaacgg gcagttacag aacctccacg ccctcatttt
     5401 tcaagaaatc gaccagacgg aaaaccggca aaccgattaa agcattcgga tcgctgcttt
     5461 caatcctttc gatcaacaat gcacccaaag cctcgctctt caacgcacac gagcaataaa
     5521 ccgcatcagg ctcgcgctcc aaatagcgga ggatgtgtag ctcgtccaac ttcctcatca
     5581 cgaccaccgt cttatcaata tgccgctgca tcctgcccgt aaccgtattt agcagaacga
     5641 ccgcgctgta aaactcaatc tccctgccgc tcaaatgcat caacatcttt tgcgcattag
     5701 caaggttcat cggcttgccc cactgcctgc cgtcgcacca cgccacctgg tccgcaccga
     5761 caatcaacgc ctcggggaaa cgtcctgcca acgaccgcgc cttaccctcg gcaaggcgca
     5821 atgccgtctg aggggcagac tcccccaaca tcggcgtttc gtcaaaatcg ggggacgccg
     5881 cctgaaaggc aatgccgagc ctttccatct gttcgcggcg gaaaaccgaa ctcgtaccca
     5941 aaatcaaagg cagttccaaa cccatcccat cctccttacc gttgaaaaca cgcccgaagg
     6001 ggcggtaaaa tccagccatg cgccgaaaca cggatacccg ccttcggcgt accgcaacat
     6061 ttttcttaaa aatattgacg ttagaacatc taaattatat catatctcgt ttatgtcaga
     6121 ccctaatttg attgacccgg aaattttcgc cgccgaaggg cagaatctgc aaggcagttt
     6181 tctgctggaa gaattggatg aacgcgtcag ttcgcacgat tatcccgccg acaggcagac
     6241 caaaatatcg tttacactga ccggcggtcg cgatcggctg caacgcctgt tcctcgacct
     6301 gaacgtcaaa gccgatatgc ccctgatttg ccagagatgt atcaaaccca tgccgttcat
     6361 gcttgatgaa agcagccgta tcgtcctgtt ttccaacgaa gagtccttgg acgaatccat
     6421 gcttgccgac gaagaactcg aaggcatact gattgaaaaa gaactcgacg tgcgcacatt
     6481 ggtagaagac caaatcctga tgtccctgcc cttttcgccg cgacacgaag actgcggcga
     6541 caatgggaca ctggaagaag tcaatcggga caaacccaac ccctttgctg ttttggcagg
     6601 tttgaaaagc agttaattag gacacagttt atttatctag gagcttgaaa tggccgttca
     6661 acaaaacaaa aaatcccctt ccaaacgcgg tatgcaccgt tcgcacgacg cgctgaccgc
     6721 gcctgcactg tctgtcgaca gcacaaccgg cgaagtacac cgcccgcacc acatctcccc
     6781 caacggtatg taccgcggcc gcaaagtggt caaagccaaa ggcgaataat ccctattcga
     6841 ctgactgaaa aagccagaac attgccatgc aattactggc tttttttgca ttggacgcac
     6901 catccgtcca aactttcgcc atacgtcaac acacaggggc aaagcgttcc gtataatacc
     6961 ccgtgaaaat attccaaaag ccccaaccac caaggaaatt ccgatgaaac agaaaatctg
     7021 gtacacctac gatgacatcc accgcgtcat caaagcattg gcagaaaaaa tccggaacgc
     7081 cgacatcaaa tacgatgcca tgattgccat cggcggcggc ggctttattc cggcacgtat
     7141 gctgcgctgt tttctggaaa ttccgattta tgccgtaacc accgcctatt acgacagcga
     7201 caacgaagga caggttaccg aagaagtcaa aaaagtccaa tggctagacc ccgttccaga
     7261 agccctgcgg ggcaaaaacg tactcgtcgt cgatgaagtg gacgacagcc gcgtaaccat
     7321 ggaattttgc ctgacagagc tgctcaaaga agacttcggt acgatcggcg tcgccgtact
     7381 gcacgaaaaa atcaaagcca aagcaggcaa aatccccgaa ggcattccct atttcagcgg
     7441 catcaccgta gaagactggt ggatcaacta tccgtgggac gcactcgaca tcgacgaaca
     7501 caaccgcctt gccgaggccg gccgaggctg accctttcag acggcatatt ttccgaaccg
     7561 atgccgtctg aagcccgcac gacccctgcc gcagaccgaa aacctaccgg agaaccctat
     7621 gattacactt gccgtagatg ccatgggcgg cgaccaagga cttgccgtta ccgtacccgg
     7681 cgcaaccgca ttcctccaag cacaccccga tgtccgcctg attatgaccg gcgacgaaac
     7741 gcaactgcgc caagccctga ccgcggcagg cgcaccgatg gaacgcatcg acatctgcca
     7801 taccacccaa gttgtcggca tggacgaagc cccgcaatcc gccctgaaaa acaaaaaaga
     7861 ctcctccatg cgcgttgcca tcaaccaagt taaagaaggc aaagcccaag ccgccgtatc
     7921 cgcaggcaac acgggcgcgc tcatggcaac cgcacgtttc gtcctcaaaa ccattcccgg
     7981 catcgaacgc cccgccatcg ccaaattcct tccttccgac accgaccacg ttaccctcgc
     8041 cctcgacctc ggcgcaaacg tcgactgcac gcccgaacag ctcgcccaat ttgccgttat
     8101 cggcagcgaa ctcgtccacg cactccatcc tcaaaaagga cagccgcgtg tcgggctggt
     8161 caacgtcggc acggaagaca tcaaaggtac ggacaccgtc aaacaaacct acaaactgct
     8221 gcaaaacagc aaactcaact ttatcggcaa catcgaaagc aacggcatcc tgtacggcga
     8281 agcagatgtc gtcgtcgccg acggctttgt cggcaacgtc atgctcaaaa ccatcgaagg
     8341 cgcggtcaaa ttcatgagcg gagccatccg ccgcgaattc caaagcaacc tgttcaacaa
     8401 acttgccgcc gttgccgccc tacccgccct caaagggctg aaaaacaaac tcgatccgcg
     8461 caaattcaac ggggccatcc tgctcgggct gcgcggcatc gtcatcaaaa gccacggcgg
     8521 cacagacgaa accggtttcc gctacgcact cgaagaagcc taccacgaag ccaagtccgc
     8581 cggcctttcc aaaatcgaac aaggcgttgc cgaacaactc gccgcactcg aaactgccaa
     8641 agccgtccaa aacgaaaatg ccgacggtct gtaacacaca cgatgccgtc tgaacgcccc
     8701 cgcccctttc agacggcatc cgcccgcacc aaacctgcgg gcgcggacgg cgatgcgcct
     8761 gtccggcact tcccaaatac ttccctgtaa aataaggagt atttgaaaaa tgaagacatt
     8821 agaaaaacgg atgaaagctc tagacaaacg gattatgaag ttcgaaaaat cccttgaagg
     8881 caggcttgat gcccgtctga ttgaatccgc attggattat attcattatt cggaacgttt
     8941 tttggctttt gaaatcctgt gtacttatat cgaagatttc gatgtccggc tgacggaaca
     9001 agaatcccgg gaaatttctt ttatcaacaa ggaatttgag atagaaagca cgtccgatta
     9061 accaataaag ccaatgggtt gataaacatg aaaacatcga cggtcgtttt tggcggattt
     9121 tttatggcag acaacggaga gcgaatccaa atccccgttt tggaaaatcc tgacattagg
     9181 gaaatcaatc actttttttc cgtatcaaat tttgagaaaa aagccggcgt ccttgttttc
     9241 agaatcatcc ccgagccgga atttggccat accgaattaa ctgtctattt tgaaaaagga
     9301 tattatttgc caatgattca aacaatttta gaaggcgggg atattgaagt caaaaacctt
     9361 aaaacggaaa attacagtgg gaaggcaagg gaaattttgg gagattccta ccctattgag
     9421 catacctcta aaaatatttc tacaattcaa aatataattt ctgaatttat gatacaaaaa
     9481 caaacaccgg caccaataat ttgatggaaa cccaacaatc aaaatgccgt ctgaagcagc
     9541 ttgggctttc agacggcatt tcctccgctt aaaacagcat atcggcaacc ccgccccgcc
     9601 cgtccacggc aatctgcatc tgaaaaccat ctgtatgcca aaccacaccc ccatcccgat
     9661 ttccgtcatt tgcaccctgc ccgtattggg caatcatcgg tttttcgctt acaatagccg
     9721 aatctgaacc aactatccaa aaaggccgtt cccatgcagt atgccaaaat ttccggcacg
     9781 ggcagctatc ttcctgccaa ccgcgtcagc aatgacgacc ttgcccaaaa ggtagatacc
     9841 tcggacgagt ggattaccgc gcgcacgggc atcaagttcc gccatattgc agccgaaaat
     9901 gagaaaacca gcgatcttgc cgccgaagca gcccgccgcg cgctggatgc agccggatta
     9961 gacagcggcg aaatcgattt gattatcgtg gcgacggcaa cgccggatat gcagtttcct
    10021 tctaccgcca ccatcgtgca gcaaaaattg ggcatcacca acggctgtcc cgcgtttgac
    10081 gtacaggcgg tgtgcgccgg ctttatgtac gcgctgacca cggcaaacgc ctacattaaa
    10141 agtggcatgg cgaaaaacgc gctggtcatc ggcgcggaaa ccttcagccg catcgtcgat
    10201 tggaacgacc gcacaacctg cgtattgttc ggcgacggcg cgggcgcggt ggttttaagc
    10261 gcgtcggaca cgccgggcat catccacagc aaactcaagg ccgacggcaa ttatctgaaa
    10321 ctcttaaacg tccccgggca aatcgcctgc ggcaaagttt ccggttcgcc gtacatttcg
    10381 atggacggtc ccggcgtgtt caagtttgcc gtcaaaatgc tgtccaaaat cgccgatgac
    10441 gttatcgaag aagccggtta caccgccgct caaatcgact ggattgttcc ccatcaggca
    10501 aaccgccgca ttatcgaatc gaccgcgaaa catttaggtt tgagtatgga caaagtcgtc
    10561 ctgaccgtcc aagaccacgg caacacatcc gccgcatcga ttccgctggc tttggatacg
    10621 ggcatccgca gcggacaaat caaacgcggt caaaacctgc tgctcgaagg catcggcggc
    10681 ggtttcgcgt ggggcgcggt gctgttgcaa tattgaaccc gatgccgtct gaaacaggct
    10741 ttcagacggc atttcccata tcatgaagcg gcaggctttc ttcaaactga tggcgtgtgc
    10801 ggcatttctg tctgccgttt cgctgcgcct ccccgtattg ggcgcgtgtt acgcaatatt
    10861 gtccctctat gcgtttgcac tttacggcat cgacaaacgg cgtgccgtgc ggggaaaacg
    10921 ccgcattccc gaacaccgcc tgctgctgcc tgccttgttc ggcggttggg cgggcgcata
    10981 cttgggcagc aggatattca ggcataaaac ggcgaaaaag cgttttgttg tgctgttccg
    11041 tctgactgtt tcaggtaatg tcctggcgac cctcatcctg a
//
LOCUS       DAXHPV010000051        10927 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.051, whole genome shotgun sequence.
ACCESSION   DAXHPV010000051 DAXHPV010000000
VERSION     DAXHPV010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10927
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.051"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(62..1207)
                     /gene="dapE"
                     /locus_tag="ACFM6C_001011"
     CDS             complement(62..1207)
                     /gene="dapE"
                     /locus_tag="ACFM6C_001011"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009014 - succinyl-diaminopimelate
                     desuccinylase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HFC6158481.1"
                     /translation="MTETQSLELAKALISRPSVTPDDQNCQKLLAERLHKIGFAAEAL
                     HFGDTKNIWLRRGTKAPVVCFAGHTDVVPTGPVEKWDSPPFEPTERDGRLYGRGAADM
                     KTSIACFVTACERFVAENPDHQGSIALLITSDEEGDAQDGTTKVVDVLKARGELIDYC
                     IVGEPTAVDKLGDMLKNGRRGSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQ
                     EVWDEGNEYFPPTSFQISNINGGTGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAI
                     LDKHGVQYDLQWSCLGQPFLTHAGKLTDVARAAIAEICGVETELSTTGGTSDGRFIKA
                     ITKELIELGPSNATIHQINENVRLNDIPKLSAVYEGILVRLLAGNAV"
     gene            complement(1307..1927)
                     /locus_tag="ACFM6C_001012"
     CDS             complement(1307..1927)
                     /locus_tag="ACFM6C_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HI_0552 family protein"
                     /protein_id="HFC6158482.1"
                     /translation="MLTPKSCDLFNIPFFQFSQLKKYQPESIPQIKADYKENWQIWQQ
                     LIQQVAAELGAPFAPPHIERWCNGWQVRAHFFAYFKYEQYKNSAAILSILLNRRRLSV
                     SLDWHCYKADVSPIALPDYNRWLDNFDTEKYASFDMWHGAESEYDDYRTVAQQSEPDR
                     KLQNGEDFFCIGKHIERDDLGRQDVAKWIAETVEDLLPLYEACHGA"
     gene            complement(1961..2470)
                     /locus_tag="ACFM6C_001013"
     CDS             complement(1961..2470)
                     /locus_tag="ACFM6C_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HFC6158483.1"
                     /translation="MNPFETKSVTFAEPIEMLYACHGKVRRFCGQVAMLSDYIAENGC
                     NQLVLQTIRQITRYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDELLRQHVSLHGN
                     WDAVAAEFAKLEADNAYIPDAEAFKRFVAGYDVHLAIEEPLFDMGKMFIPKEKLTEIG
                     EIMAARRRR"
     gene            complement(2565..3116)
                     /gene="azu"
                     /locus_tag="ACFM6C_001014"
     CDS             complement(2565..3116)
                     /gene="azu"
                     /locus_tag="ACFM6C_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="azurin"
                     /protein_id="HFC6158484.1"
                     /translation="MKAYLALISAAVIGLAACSQEPAAPAAEATPAAEAPASEAPAAE
                     AAPADAAEAPAAGNCAATVESNDNMQFNTKDIQVSKACKEFTITLKHTGTQPKASMGH
                     NLVIAKAEDMDGVFKDGVGAADTDYVKPDDARVVAHTKLIGGGEEASLTLDPAKLADG
                     EYKFACTFPGHGALMNGKVTLVD"
     gene            complement(3397..3819)
                     /locus_tag="ACFM6C_001015"
     CDS             complement(3397..3819)
                     /locus_tag="ACFM6C_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DciA family protein"
                     /protein_id="HFC6158485.1"
                     /translation="MNLEQLGRRDALLSGLLKQAGQWRRLDAAVKKLLPANLHPHFQT
                     VCIEDGRLVLLAANNMAASRLKMIAPSVLPQLAGLDASIRSVSVRLVPKPEKPPKTNT
                     LHLSKAALESFGSAAVKLEKRHPELAEALANLVRRHGA"
     gene            3950..6700
                     /gene="secA"
                     /locus_tag="ACFM6C_001016"
     CDS             3950..6700
                     /gene="secA"
                     /locus_tag="ACFM6C_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0017038 - protein import [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HFC6158486.1"
                     /translation="MLTNIAKKIFGSRNDRLLKQYRKSVARINALEEQMQALSDADLQ
                     AKTAEFKQRLADGQTLDGILPEAFAVCREASRRTLGMRHFDVQLIGGMVLHDGKIAEM
                     RTGEGKTLVATLAVYLNALAGKGVHVVTVNDYLASRDAGIMEPLYNFLGLTVGVIISD
                     MQPFDRQNAYAADITYGTNNEFGFDYLRDNMVTDQYDKVQRELNFAVVDEVDSILIDE
                     ARTPLIISGQADDNIQLYQIMNTVPPHLVRQETEEGEGDYWVDEKAHQVILSEAGHEH
                     AEQILTQMGLLAENDSLYSAANIALMHHLMAALRAHSLFHKDQHYVIQDGEIVIVDEF
                     TGRLMSGRRWSEGLHQAVEAKEGVEIKRENQTLASITFQNYFRLYTKLSGMTGTADTE
                     AFEFQSIYNLETVIIPTNRPVQRKDFNDQIFRSAEEKFEAVVKDIEECHKRGQPVLVG
                     TTSIENSELVSHLLQKAGLPHNVLNAKEHEREALIVAQAGKVGAITVATNMAGRGTDI
                     VLGGNLKHQTDAIRADEALSDEEKQAQIAALENGWQAEHDKVMEAGGLHIIGTERHES
                     RRIDNQLRGRSGRQGDPGSSRFYLSFEDPLLRLFALDRAAAILNRLAPERGVAIEHNL
                     LTRQIEGAQRKVEGRNFDMRKQVLEYDDVANEQRKVIYSQRNEILTSKDISDLMKEIR
                     SDVVSDLVDTYMPPDSMEEQWDIPTLENRLAAEFRLHEDIQSWLKADNAIDGQDIKER
                     LIERIENEYAAKTELVGKQAMADFERNVMLQVIDNQWREHLAAMDYLRQGIHLRSYAQ
                     KNPKQEYKREAFTMFQDLWNGIKFHIASLLTSVQIEQNPVAVVEEQPIGNIQSIHSES
                     PDMEELLGQSQTDLVTEAFNPDGTDFSPEALEARGQIVHRNDPCPCGSGLKYKQCHGK
                     LA"
     gene            6844..8616
                     /gene="dnaG"
                     /locus_tag="ACFM6C_001017"
     CDS             6844..8616
                     /gene="dnaG"
                     /locus_tag="ACFM6C_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HFC6158487.1"
                     /translation="MIPSDFIDELLAKTDIVDIIDEQVPLKKGGANYMACCPFHKEKT
                     PSFSVSPTKQFYHCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQND
                     NPEVRAERKKKQQTLEETTAAAADFYAQQLKFNPAAKAYLDKRGLSAEVIAHYGLGYA
                     PDGWQPLAQVFQPYPNTALVDTGMVIDNEGRYYDRFRHRIMFPIRNPRGQVIGFGGRV
                     LDDSKPKYLNSPDTPLFDKGKNLYGLYEGRAAVKEVGRILVVEGYMDVVALAQFGVGY
                     GVAALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFL
                     FLPEEHDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLTDGIHLNTQEGKAELVKTS
                     SPLLAQITAPALAYLLKQRLSELVGIDPDNLAQLLGQETPKRHVKQKNYKLPPISVKQ
                     PVMPTLVQRQIRSLLINPDWAAYIDLPDYLALDGDFACLANLAETIKNHPSVPATAQV
                     LEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ
                     KSLQSGLNESEKKLLLSLLTAKQN"
     gene            8803..10731
                     /gene="rpoD"
                     /locus_tag="ACFM6C_001018"
     CDS             8803..10731
                     /gene="rpoD"
                     /locus_tag="ACFM6C_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HFC6158488.1"
                     /translation="MSKNQNHEEYQDDARPLTIEEQRARLRQLIIMGKERGYITYSEI
                     NDALPDDMSDADQIDNIVSMISGLGIQVTEHAPDAEDILLSDNAAVTDDDAVEEAEAA
                     LSSADSEFGRTTDPVRMYMREMGQVDLLTREDEIIIAKKIENALKNMVQAISACPGSI
                     AEILELIEKIRKDEIRVDEVVEAIIDPNEVLLNELGLGHLETTAPEKPSNDNSDENED
                     DEESEEDADEISAANLAELKQKVIGHFAQIEKDYKKMIGRLEKHHSRHKDYLAYRDAI
                     ANKLLEVRFATRQIDSLSSSLRGKVENIRKLEREIRDICLDRVHMERDYFIQNFLPEI
                     TNLEWIEEEIAKGRVWSDALDRFRHAILEKQTELADMEKETRISIEELKEINKNMVSS
                     EKETAAAKQEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK
                     FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQETGEEPDSAKLA
                     ELMQMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDANNVAPADAAMYTSLHE
                     VTKEILESLTPREAKVLRMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRH
                     PTRSDRLRSFLDSEDSKL"
BASE COUNT         2870 a         3048 c         2691 g         2318 t
ORIGIN      
        1 tcaaacccac gttaggtcta agcaaatggt cggacatccg tatccggcaa gcaagctgct
       61 ttcagacggc atttccagcc aacaaacgca ccaatatccc ctcatacacc gccgacagct
      121 tcggaatgtc gtttagccgc acgttttcgt tgatttggtg gatggtggcg ttggacggac
      181 ctaattcgat aagctctttc gtaatggctt taatgaagcg tccgtccgaa gttccgcctg
      241 tggtggacaa ttcggtctct acgccgcaga tttcggcaat ggcggcgcgt gccacgtcgg
      301 tcagtttgcc cgcgtgggtc aggaagggct gccccaaaca cgaccactgc aaatcgtatt
      361 gcacaccgtg tttgtccaaa atggcgtgga cgcgttgttt cagccctgct tcggtggact
      421 cggtggagaa gcggaaattg aatttgacat tcagctcgcc cggaatgacg ttggtcgcgc
      481 ctgtgccgcc gttgatattg gaaatttgaa agctggtcgg cgggaagtat tcgttgcctt
      541 cgtcccagac ttcctgtgtc agctctaaca aggcaggggc aaaagtgtgg acggggttga
      601 ttgccaaatg cggataggca atatgccctt gcttgccttt gacggtcagg ttgcctgaca
      661 gcgaaccgcg ccggccgttt ttcaacatat cgcccaattt atccacggca gtcggttcgc
      721 cgacgatgca gtaatcgatc aactcgccgc gcgctttcaa cacatcgacg acttttgttg
      781 tgccgtcctg cgcatcgccc tcttcgtccg aagtaatcag gagcgcaatg ctgccttgat
      841 gatcgggatt ttcggcaacg aaacgctcac aggcggtaac aaaacaggcg atgctggttt
      901 tcatgtccgc cgcgccgcgc ccgtataatc ttccgtcgcg ttcggtcggc tcgaacgggg
      961 gcgaatccca tttttcgaca gggcctgtcg gcacgacgtc agtatgccct gcaaaacaga
     1021 cgacgggagc tttcgtgccg cgtcgcaacc agatgttttt ggtatcgccg aaatggagtg
     1081 cctcagccgc aaaaccgatt ttgtgcaggc gttcggcaag gagtttttgg caattttggt
     1141 catccggcgt aacggacggg cgggaaatca acgctttggc gagttctagg gattgggttt
     1201 cggtcatttt tcggcttttc tgtttgagat gccgtctgaa cggagtttca gacggcattt
     1261 gatgttgaat ggaacgggct aacgatagcg aagcgggttc ttcaggtcaa gcaccatgac
     1321 acgcttcata aagcggcagc aaatcttcca ccgtttccgc tatccatttc gcgacatcct
     1381 gcctgcccaa atcgtcgcgt tcgatatgtt tgccgatgca gaagaagtct tcgccgtttt
     1441 gcaactttcg gtcgggttcg ctttgttgcg cgacggttcg gtagtcgtcg tattcgcttt
     1501 ccgcaccgtg ccacatatcg aaagaagcgt atttttcggt atcaaaatta tccaaccagc
     1561 ggttgtaatc aggcagcgcg atgggggaaa catcggcttt atagcagtgc caatccaagc
     1621 tgacgctcag acggcggcgg ttgagcagta tcgacaaaat cgctgcggaa tttttatatt
     1681 gttcgtattt gaagtaggca aagaaatggg cgcgaacctg ccagccgttg caccagcgtt
     1741 cgatgtgcgg cggcgcaaac ggcgcaccca attcggcggc aacctgctga atcagctgct
     1801 gccatatctg ccagttttcc ttgtagtcgg ctttgatttg cggaatgctt tcaggctggt
     1861 attttttaag ctgggaaaat tggaaaaacg ggatattgaa caaatcgcaa cttttcgggg
     1921 tcagcataat atatccttga gacgattgtt tcagacggca ttatctgcgc cggcgcgccg
     1981 ccatgatttc gccgatttcg gtcagtttct ctttggggat gaacatcttg cccatgtcga
     2041 acaagggttc ttcaatcgcc aaatgcacat catatcccgc cacaaagcgt ttgaacgctt
     2101 ccgcatcggg aatataggca ttgtctgctt cgagtttggc aaattcggca gccacggcat
     2161 cccagttgcc atgcaggctt acatgttggc gtaaaagctc gtccacgctt tcttgggctt
     2221 gcggcgcata ttgcagcagg agcgggaaaa agttttcttc ttcgtcctca tggtgcagcg
     2281 gcgcggcaac gttgaaatac cgggtgattt ggcggatggt ttgcaaaaca agctgattgc
     2341 agccgttttc ggcgatgtag tccgacagca tcgcgacttg gccgcaaaaa cggcgtactt
     2401 tgccgtggca ggcatacagc atttcaatcg gttcggcaaa ggtaacgctt ttggtttcaa
     2461 acggattcat gttttcgttc tcaacgggca cttttcaagc agtcatttta taataaaaca
     2521 gcctgcacaa agcaggctgt ccgtcttttg agactttaag cggattaatc gaccaaagtc
     2581 actttgccgt tcatcaaagc accgtgacct gggaaggtac aagcgaattt atattcgccg
     2641 tcggccaatt tagcaggatc cagagtcagg gaagcttctt cgccgccgcc gatcagtttg
     2701 gtatgggcaa caacgcgtgc atcatcaggt ttgacatagt cggtatcggc agcacctacg
     2761 ccgtctttaa atacgccgtc catgtcttca gctttggcaa tcacgagatt gtgacccatg
     2821 ctggctttgg gttgcgtacc ggtatgtttc agagtgatgg tgaactcttt acatgctttg
     2881 ctgacttgga tgtctttggt gttgaactgc atattgtcgt tggattcgac agttgccgca
     2941 cagttgccgg cagcaggggc ttcggcagca tctgcaggag cagcttcggc ggcaggtgct
     3001 tcggaagcgg gtgcttcagc agcaggagtt gcctcggcag caggcgcggc aggttcttga
     3061 gagcaggcag ccaaaccgat aacggcggca gaaatcagag ccagatacgc tttcataaca
     3121 aatctccaat cgataaaata atattcggtt ttacagaaat caaagtgcaa ccgccattaa
     3181 caaaaccttg aaaaagattc cgccgcgttg cacaaacaga tgtttcggag cggcattttg
     3241 ctacaaattt catttgaaat caaagcctgt ctgcaagttt acaatcgttt actttaaaag
     3301 gggcaatttt accccgaacc tatttcttta gtattagacc cattatcctt tacttcttaa
     3361 tattaacgga tgtttacaca aattcccgta tacattttat gcgccatgcc ttctaaccaa
     3421 gtttgccaat gcctccgcca attcgggatg ccgtttttcc aactttaccg ccgccgaacc
     3481 gaaactctcc agcgcagcct tactcaaatg cagggtattg gttttcggcg gtttttccgg
     3541 tttcgggacc agcctgaccg aaacagagcg tatcgaagcg tcaagccctg ccaactgcgg
     3601 caataccgac ggtgcaatca ttttcaagcg cgatgccgcc atattgtttg ccgccaaaag
     3661 gacaagcctg ccgtcttcga tacataccgt ctgaaaatgc gggtgcaggt tggcaggcag
     3721 cagttttttc acggcggcat ccaaccgccg ccactgtccc gcctgtttca aaagtccgga
     3781 aagcagcgcg tcccgcctgc ccaactgttc caaattcata aaacatacac ccaaaaagat
     3841 tgaaataccg caaacgcgcc tttatttcag acggcattag cactttgcac aaacgcttgt
     3901 gttaaaatcg cgttttcgcc cactattata tcaggcgcag gaattattca tgctgacaaa
     3961 cattgccaag aaaatcttcg gcagccgcaa cgaccgcttg ctgaaacaat accgtaaatc
     4021 cgttgccaga atcaacgcgc tcgaagaaca gatgcaagcc ctaagcgatg ctgatctgca
     4081 agccaaaact gccgaattca aacaacgcct cgccgacggt cagactttgg acggcatttt
     4141 gcccgaagcc ttcgccgtct gccgcgaagc gtcccgccgc accctcggta tgcgccactt
     4201 cgacgtgcag cttatcggcg gtatggtgct gcacgacggc aaaatcgccg aaatgcgtac
     4261 cggcgaaggc aaaaccctgg tcgccaccct cgccgtctat ctcaacgcgc tggccggcaa
     4321 aggcgtacac gtcgttaccg tcaacgacta cctcgcctca cgcgatgcgg gcattatgga
     4381 gccgctctac aatttcctcg gccttaccgt gggcgtgatt atttcagata tgcagccgtt
     4441 cgaccgtcaa aacgcctatg ccgccgatat cacctacggc accaataatg aattcggctt
     4501 cgactacctg cgcgacaata tggttaccga ccaatacgac aaagtgcagc gcgaattgaa
     4561 ttttgctgtt gtcgatgaag tggattccat cttgattgac gaagcgcgca ctccgctgat
     4621 tatctccggt caggcggatg acaacatcca gttgtaccaa atcatgaaca ccgttccgcc
     4681 ccacctcgtc cgtcaagaaa ccgaagaagg cgaaggcgac tattgggtcg acgaaaaggc
     4741 acatcaggtc atcctgagcg aagcaggtca cgaacacgcc gagcaaatcc tgacccaaat
     4801 gggattgctg gcagaaaacg actccctcta ttccgccgcc aatatcgccc tgatgcacca
     4861 ccttatggcg gcattgcgcg cgcattccct cttccacaaa gaccaacatt acgtcatcca
     4921 agacggcgaa atcgtcatcg tggacgaatt caccggccgg ctgatgtccg gccgccgctg
     4981 gtcggagggt ctgcatcaag ccgtcgaagc caaagaaggc gtggaaatca aacgcgaaaa
     5041 ccaaaccctt gcctccatca ccttccaaaa ctatttccgc ctgtacacca agctctccgg
     5101 catgaccggc acagccgata ccgaagcttt cgagttccaa agcatctaca acctcgaaac
     5161 cgtcatcatc ccgaccaacc gccctgtaca gcgcaaagac ttcaacgacc agattttccg
     5221 ttccgccgaa gaaaaattcg aagccgtcgt caaagacatc gaagaatgcc acaaacgcgg
     5281 gcagcccgtc ctcgtcggta cgaccagcat cgaaaactcc gaactggtct cccaccttct
     5341 gcaaaaagcc ggactgccac acaacgtcct caacgccaaa gaacacgaac gcgaagcgct
     5401 gattgtcgcc caggcaggca aagtcggcgc gattaccgtt gccaccaata tggcgggacg
     5461 cggtacggac atcgttttag gcggcaacct gaagcaccaa accgatgcca tccgtgccga
     5521 cgaagccttg agcgacgaag agaaacaggc acaaatcgcc gcactcgaaa acggctggca
     5581 ggcagaacac gataaagtaa tggaagcagg cggcctgcac atcatcggta cggaacgcca
     5641 cgaaagccgc cgtatcgaca accaattgcg cggacgttcc ggccgtcagg gcgaccccgg
     5701 atccagccgt ttctaccttt cgtttgaaga cccgctgctg cgcttattcg cactcgaccg
     5761 cgccgccgcc atcctcaacc gtctcgcccc cgaacgcggc gttgccatcg aacacaacct
     5821 gctgacgcgc caaatcgaag gggcgcaacg caaagtcgaa ggcagaaact tcgatatgcg
     5881 caaacaggtt ttggaatacg acgacgttgc caacgagcaa cgtaaagtca tttacagcca
     5941 gcgcaacgaa attctgacca gcaaagacat cagcgacctg atgaaggaaa tccgttctga
     6001 tgtcgtcagc gacctcgtgg atacctatat gccgcccgac agcatggaag aacaatggga
     6061 catcccgact ttggagaacc gtctggctgc cgaattcaga ctgcacgaag acatccaatc
     6121 ctggctgaag gcggacaatg cgattgacgg tcaagacatc aaagaacgcc tgatcgaacg
     6181 catcgaaaac gaatatgccg ccaaaaccga actggtcggt aagcaggcaa tggccgattt
     6241 cgagcgcaac gtgatgttgc aggtcatcga caaccaatgg cgcgaacacc tcgccgctat
     6301 ggactacctg cgacaaggca tacacctgcg cagctatgcc caaaaaaatc cgaagcagga
     6361 atataaacgt gaagccttta ccatgttcca agacctgtgg aacggcatca aattccatat
     6421 tgcctccctg cttacctcgg ttcaaatcga acaaaaccct gtcgcggtgg ttgaagagca
     6481 acccatcggc aacatccagt ccatccattc cgaatcgccc gatatggaag aacttttggg
     6541 tcagtcgcaa accgatttgg ttaccgaggc ctttaatccc gatggaacgg atttcagccc
     6601 cgaagccttg gaagcgcggg gacaaatcgt ccaccgcaac gacccctgcc cctgcggcag
     6661 cggtttgaaa tacaaacaat gccacggcaa actggcttaa gcgtttgaac gcaaatgccg
     6721 tctgaacatc cgatttccgg tttcagacgg cattttgcct gaaccgccac atccgaccgc
     6781 cattccgaaa aatcccgatt tcgtaccgtc caaactaaaa acaggcatcc gccccgccga
     6841 actatgattc catccgactt cattgacgaa cttctggcca aaaccgatat tgtcgacatc
     6901 atcgacgaac aggttccgct gaaaaaaggc ggggcgaact atatggcgtg ttgcccgttc
     6961 cacaaggaaa aaacgccgtc gttttcggtc agtccaacca agcagtttta ccattgtttc
     7021 agttgcgggg cgcatggttc ggcgattggt tttgtgatgg agcatcaggg gctgtcgttt
     7081 ccggaggctg tgcagtttct tgccgaccgt gtgggcatgg ttgtgcctaa agtgcgtggg
     7141 cagaacgata atcccgaagt ccgtgccgaa cgtaagaaaa aacagcagac gctggaagaa
     7201 acgacggcgg cggcggctga tttttacgcg caacagctaa aattcaatcc ggcggcaaaa
     7261 gcttatttgg acaagcgcgg cttgagtgca gaagttatcg cgcattatgg tttgggctac
     7321 gcgcccgacg gctggcagcc tttggcgcaa gtgttccaac cgtatccgaa taccgcgttg
     7381 gtggatacgg ggatggtgat tgacaatgag gggcggtatt acgaccgctt ccgccatcgg
     7441 attatgttcc ctatccgcaa tccgcgcggg caggtcatcg gtttcggcgg cagggtgctg
     7501 gacgactcca aacccaaata tctaaactct cccgatacgc ctttgtttga taaggggaaa
     7561 aacctttacg gattgtatga agggcgtgct gctgtcaagg aagtggggcg gattctggtg
     7621 gtcgaaggct atatggacgt ggtcgcgctg gcacagttcg gcgtaggcta cggtgtggcg
     7681 gccttgggca cggcaacaac agcggaacac gtcaaaatcc tgatgcgtca ggcggacagt
     7741 atttatttct gtttcgacgg cgacagcgcg gggcgcaaag cggcttggcg cgcgctggaa
     7801 aacgcgctgc cgcaattgaa ggacgacaaa tcgctgcatt ttttgttcct gcccgaggaa
     7861 cacgaccccg acagctacat ccgcgcctac ggcaaagcgc aatttgaaga tgcgctgttg
     7921 aatcaaagca agcccttgtc ggaatatttt tgggaacatc ttacagacgg cattcatctc
     7981 aatacgcagg aaggcaaggc ggaattggta aaaaccagtt cgccgctttt ggcgcagatt
     8041 accgcgccgg cattggctta tttgttaaaa caacggctta gcgagctggt cggcatcgac
     8101 cccgacaacc tcgcgcaact gctcggacag gaaacgccaa agcggcacgt caaacaaaaa
     8161 aactacaaac tgcccccgat ttccgtcaaa cagcccgtta tgccgacatt ggtgcaacgg
     8221 caaatccgca gcctcttgat aaatccggat tgggctgcat atatagacct gcccgattat
     8281 ttggcgttgg acggcgattt cgcctgcctt gccaacctcg ccgaaaccat taaaaaccat
     8341 ccttccgtgc cggcaaccgc acaggttttg gaacatatgc gcggttcgcc ctacgaagaa
     8401 acaatcaacc gcatcttccg gtcggccctt caatcggaag aaatggaagg cggcggcgaa
     8461 gaagattgcg aaaacttcca aatcggcatc aaaaaactgc tcaatgagtt aaaatacagc
     8521 caaatcgaaa cattaaaaca aaaaagcctg caatccggct taaatgaaag cgagaaaaaa
     8581 cttttgctgt cgctgctgac cgcaaaacaa aattgaccgg cggattccgc catccgtaaa
     8641 ccgttatgcc gtctgaaaag cattcacccc ggctgcaaca acgacacctg cagaacaccc
     8701 atcccaaaaa gccttcagac ggcatcagag taccctactc tgccacgcct tcaggtgcgt
     8761 ccaaacgcaa accgtcggca tcttgccaac agaaagcaga caatgtccaa aaaccaaaat
     8821 cacgaagaat accaagacga tgcccgcccc ctgacgattg aggaacaacg cgcgcgcctg
     8881 cgccaactca tcattatggg caaagaacgc ggctacatca cctactccga aatcaacgac
     8941 gcactgcccg acgatatgtc cgatgccgat caaatcgaca acatcgtcag tatgatttcc
     9001 ggtttgggca tccaagttac cgaacacgcc cccgatgcgg aagacatatt gttaagcgac
     9061 aatgccgccg ttaccgacga tgatgccgtc gaagaagccg aggccgccct ttccagcgca
     9121 gattccgagt tcggcaggac gaccgacccc gtccgcatgt atatgcgcga aatgggacag
     9181 gtcgacctgc tgacccgcga agacgaaatc atcatcgcca aaaaaatcga aaacgccctg
     9241 aaaaatatgg ttcaggccat ctccgcctgc ccgggatcca ttgctgaaat cttagaactc
     9301 atcgaaaaaa tccgcaaaga cgaaatccgc gtcgacgaag tcgtagaagc cattatcgac
     9361 ccgaatgaag tattgctcaa cgaattgggc ttggggcact tggaaaccac agcacccgag
     9421 aaaccttcca acgacaattc ggacgaaaac gaagacgacg aagaatcgga agaagatgcg
     9481 gatgaaatct cggcagccaa tctcgccgaa ttgaaacaaa aagtcatcgg ccactttgcc
     9541 caaatcgaaa aagactacaa aaaaatgatc ggccgtttgg aaaaacacca cagccggcac
     9601 aaagactatc tcgcctaccg cgacgcgatt gccaacaaac tgctggaagt ccgtttcgcc
     9661 acccggcaaa tcgacagcct cagcagcagc ctgcgcggga aagtagaaaa catccgcaaa
     9721 ctcgaacgcg aaatccgcga catctgcctc gaccgcgtcc atatggaacg cgactacttc
     9781 atccaaaact tcctgcccga aatcaccaat ctagaatgga ttgaagaaga aatcgccaaa
     9841 ggcagggttt ggagcgacgc gctcgaccgc ttccgccacg ccatcctcga aaaacaaacc
     9901 gagttggcgg atatggaaaa agaaacccgc atttccatcg aagagttgaa agaaatcaac
     9961 aaaaatatgg tgtcgagcga aaaagaaacc gcagccgcca aacaggaaat gattcaggca
    10021 aacttgcgcc tcgtcatttc cattgccaaa aaatatacca accggggctt acaattcctt
    10081 gatctgattc aggaaggcaa catcggtttg atgaaagcgg tcgataagtt cgaataccgc
    10141 agaggctata aattctccac ctacgcaacc tggtggatcc gccaggcaat tacacgctcg
    10201 attgccgatc aggcgcgtac catccgcatt ccggtacata tgattgaaac catcaacaag
    10261 atgaaccgca tctcgcgcca acaccttcaa gaaaccggcg aagaacccga ttccgccaaa
    10321 cttgccgaac tgatgcagat gcccgaagac aaaatccgca aaatcatgaa aatcgccaaa
    10381 gagccgattt cgatggaaac ccccatcggc gacgacgacg attcgcactt gggcgacttc
    10441 atcgaagatg ccaacaatgt tgcgccggcc gatgcggcaa tgtacaccag cctgcacgaa
    10501 gtaaccaaag aaatactcga aagcctgacc ccgcgtgagg caaaagtcct gcgtatgcgt
    10561 ttcggcatcg atatgaacac cgaccacacg ctggaagaag tcggcagaca gtttgacgta
    10621 acgcgcgaac gcatccgaca aatcgaggca aaagcactcc gcaagctgcg gcatccgaca
    10681 agaagcgacc gtttgagaag tttcttggac agcgaagaca gcaagctgta aaccaaaaaa
    10741 ccgcaggttt caaatacctg cggttttttc ttacacaata aacaacgctt ccacatatcc
    10801 cacactccta tcccgagacc tttgcaaaat cccccaaaat cccctaaatt cccaccaaga
    10861 catttaggag caccttcttc caacaaaccg cgcaagccat gattgccaaa cacatcgacc
    10921 gcttccc
//
LOCUS       DAXHPV010000052        10764 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.052, whole genome shotgun sequence.
ACCESSION   DAXHPV010000052 DAXHPV010000000
VERSION     DAXHPV010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10764)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10764)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10764
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.052"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(120..815)
                     /locus_tag="ACFM6C_001019"
     CDS             complement(120..815)
                     /locus_tag="ACFM6C_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HFC6158489.1"
                     /translation="MKLKTLALTSLTLLALAACSKQAETSVPADSAQSSSSAPAAPAE
                     LNEGVNYTVLSTPIPQQQAGKIEVLEFFGYFCPHCAHLEPVLSEHIKTFKDDTYMRRE
                     HVVWGDEMKPLARLAAAVEMAGESDKANSHIFDAMVNQKINLADTDTLKKWLSEQTAF
                     DGKKVLAAFEAPESQARAAQMEELTNKFQISGTPTVIVGGKYQVEFKDWQSGMTTIDQ
                     LVDKVREEQKKPQ"
     gene            complement(986..1645)
                     /locus_tag="ACFM6C_001020"
     CDS             complement(986..1645)
                     /locus_tag="ACFM6C_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HFC6158490.1"
                     /translation="MKTAILIDGAFFIKRVRSLGLSQNPHDAKRIADLAFRYSMLHLK
                     DKINGTDQMDDLYRIFFYDCVPFEKKMHNPVSHRAIDFSKTPEAIFRCNLHTELKKKR
                     KLALRLGKLSDNTAWILKPQVMKNLLKNPSTQITENDVVLDVKQKGVDMRIGLDISSI
                     TLKKQADKIILFSGDSDFVPAAKLARREGIDFILDPMWNHVPPDLMEHIDGLKTKCPK
                     P"
     gene            complement(1848..3958)
                     /locus_tag="ACFM6C_001021"
                     /pseudo
     CDS             complement(1848..3958)
                     /locus_tag="ACFM6C_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226965.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0015343 - siderophore-iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(4144..4749)
                     /locus_tag="ACFM6C_001022"
     CDS             complement(4144..4749)
                     /locus_tag="ACFM6C_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HFC6158491.1"
                     /translation="MTRQSLQQAAESRRSVYSLNKNLPVGKDEVVQIVEHAVLHTPSS
                     FNSQSARVVVLFGEEHDKVWQFVEDALRAVVPADSFEPTAQKLNLFKAGAATILFYED
                     QNVVKGLQEQFPAYAANFPVWADQANAMVQYAVWTTLAAVGVGANLQHYNPLPDAAIA
                     KAWNIPENWLLRAQMVIGGIEGAAGEKTFEPVAERLKVFGA"
     gene            complement(4798..5196)
                     /locus_tag="ACFM6C_001023"
     CDS             complement(4798..5196)
                     /locus_tag="ACFM6C_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HFC6158492.1"
                     /translation="MSDCCNRIQPVLLSVLRIVTAYLFLLHGTSKIFAFPIEMGSGSP
                     GGLLLLASILEIVGGILLVLGLFARPAAFVLSGQMAVAYFMAHASGNALFPIANGGES
                     AVLFCFVFLYIAAAGGGAWSLDRLFFKRKA"
     gene            5304..6215
                     /locus_tag="ACFM6C_001024"
     CDS             5304..6215
                     /locus_tag="ACFM6C_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HFC6158493.1"
                     /translation="MDTLFSLKVFRQVVQSGGFTRAAGALGISTAMASKHVSHLENTV
                     QAKLLHRNSRNLSLTEAGEEYYRQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWF
                     AGSQICNWLAEYRERYPEVTLELILDNRHVDLIAEGVDLALRVSQTLSPSLIARPLAE
                     IEFALLASPDFLRRNGVPETPEEVAGLPAVLPTYTNQQKLDLTRKSDGKKYRLELTPV
                     IRTDNTLMMREMIKAGACIGYQPLWAAEHDLRCGTLVRLLPGYAVPTDRLNAVYADRA
                     FLSAKVRSFIDFLNEKIASRKGCRNAV"
     gene            6205..7506
                     /locus_tag="ACFM6C_001025"
     CDS             6205..7506
                     /locus_tag="ACFM6C_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding domain-containing protein"
                     /protein_id="HFC6158494.1"
                     /translation="MPSETARPLYADTCAAHTLVWFRQNLRIRDNAALCTAVAEGLPV
                     IGIWIDDAETDNPRRAAFYRQSAAELAQGLAGRGIPLYTAASPAELVRLAVRLNIRAV
                     IADESHTFADKLADNALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYRE
                     VWLDRFSKQPPAGPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRF
                     LEQADSYSVLKDFPSRKHTSLMGAYLSAGCISPRLLARESLERRLNAWADNIIRRDFF
                     LQLALQHTDDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPALRRLSA
                     DFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHTCPDIAAASYRTDPDGT
                     FIKRHIPELAHLSADTVHTPWRFACSVDTHGYPAHPVAGIP"
     gene            complement(7574..7744)
                     /locus_tag="ACFM6C_001026"
     CDS             complement(7574..7744)
                     /locus_tag="ACFM6C_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158495.1"
                     /translation="MLLYRLLGGAEIECGRCPVPPMTDWQHFLPAMGTVSAWVAVIWA
                     YLMIESEKNGRY"
     gene            7901..10051
                     /gene="dinG"
                     /locus_tag="ACFM6C_001027"
     CDS             7901..10051
                     /gene="dinG"
                     /locus_tag="ACFM6C_001027"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase DinG"
                     /protein_id="HFC6158496.1"
                     /translation="MLTDLEKNAIRDHYQNIGKNLPGFRPRASQREMIAAVANAFSRT
                     LAREEGGEPPKREGESIAVIEGPTGVGKSLAYLLAGGIMAQTRGKRLIVSSATVALQE
                     QLVDRDLPFLVEKSGLELSFALAKGRGRYLCPYKLYQLTQSNAQQNLLGFEAPAVLWD
                     SKPKPEELKLLRDIADEFSARRFNGDRDAWPEKIDDAIWLKVTNDRHGCLKTACPNRP
                     ECPFYLARDVLETVDVVVANHDLLLADISMGGGVILPAPENSFYCIDEAHHLPKKALS
                     RFAAEHSWNIAVWTLEKLPQLTGKIAALTDKAELANLADEAAASLLDSLHEWQFHLAE
                     EPSLSMGPSENDRRTNSEPTWLWEDGKIPEGLETTVSNTAIAARSLLKHVVGLNDALS
                     AARREKEQDGALLDRLTGEFGIFIVRIEQISAVWDLLSTVPLEGEEPLAKWITRRADD
                     KNDYIFNASPISSASHLANSLWRRAAGAVLTSATLQSLGNFNLMLRQTGLQWLPETTT
                     LALKSPFDFEKQGELYIPPIYASPKDPEAHTAAVIEWLPKLISPTEAIGTLVLFSSRK
                     QMQDVALRLPGDYLPLLLVQGELPKAVLLQKHHRAIEEGKASIIFGLDSFAEGLDLPG
                     TACVQVIIAKLPFAMPDNPIEKTQNRWIEQRGGNPFIEITVPEAGIKLIQAVGRLIRT
                     EQDYGRVTILDNRIKTQRYGQQLLAGLPPFKRIG"
     gene            10088..10702
                     /locus_tag="ACFM6C_001028"
     CDS             10088..10702
                     /locus_tag="ACFM6C_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
                     /protein_id="HFC6158497.1"
                     /translation="MNFTRLLNQVLSTVQKKGGTFSDSPLNSFGGGALVAGIASMLLN
                     GKNRKTITKIGSTAALGYLAYRGYQMWQQNKGRATVTQSDFQPAGETEETYSRTVLRT
                     MIAAAASDGMIDEAKRRTIEQESGTDPETAAWLAAEYRLPASIEDIAAAVGNDEALAA
                     EAYLAARLVCADLSRKETVFLARLSQALKLDDNLVESLERQLGF"
BASE COUNT         2548 a         3056 c         2732 g         2428 t
ORIGIN      
        1 ctatatattc tgatttaaaa ccataaggct ttaagcaatc atctcttcta taaagcctaa
       61 atacaaaagg ccgtctgaaa tcctattttc agatggcctt tactcattca atcctcaact
      121 tattgcggct ttttctgctc ttcgcgtact ttatccacca actggtcaat cgtggtcata
      181 ccggactgcc agtctttaaa ttcaacttgg tatttgccgc cgacaatcac agtcggtgtg
      241 ccgctgattt ggaatttatt ggtcaactct tccatttgag ccgcacgcgc ttggctttca
      301 ggagcctcaa atgcagccaa tacttttttg ccgtcaaacg ctgtttgctc ggacagccat
      361 tttttcaggg tatcggtatc ggccagattg attttttgat taaccatcgc atcgaaaata
      421 tggctgttgg ctttatctga ttcaccggcc atttccactg cggccgccaa acgtgccaaa
      481 ggtttcattt catcacccca cacgacatgc tcccggcgca tataggtatc gtctttaaac
      541 gttttgatgt gctcgctcaa gaccggctca agatgggcgc aatgcgggca gaagtagccg
      601 aaaaattcca atacttcgat tttaccggcc tgctgttgcg gaataggcgt agacaataca
      661 gtgtagttca caccttcgtt caactcagca ggggctgccg gagcagatga gctgctttgg
      721 gcgctgtctg ccggaacact ggtttcagcc tgtttgctac aagcggccaa tgccaacagg
      781 gtcaatgaag tcaaagctaa ggttttcagt ttcataggta tctcttgtgt gtcagattaa
      841 tgtgcggatt ttatggcatt ttattgaagg cgtgttcgat ttgagtgaaa aaatgtgttt
      901 agttttattt cagcctttat aaaggccgtc tgaaatatgg cttagataat tagccttatt
      961 ttcagacggc ctttgttcta gtaatttacg gtttcggaca ttttgtcttc aatccgtcga
     1021 tgtgttccat taagtcaggt gggacatgat tccacatagg atcaagaata aaatcgatac
     1081 cttcccgtct ggctaatttg gctgctggga caaaatcgga atcaccagaa aacaagatga
     1141 ttttatcggc ttgttttttt aaggtaatag atgaaatatc caagcctata cgcatatcta
     1201 cacctttttg tttaacatcg agcacgacat cgttttccgt aatttgagtt gacgggtttt
     1261 tcagaagatt tttcatgact tggggtttta atatccatgc tgtattgtcc gacagcttgc
     1321 ctaaacgtaa cgctaattta cgcttcttct tcaattcggt atgcagattg caacgaaata
     1381 tggcttccgg agtctttgaa aaatctatgg cacgatgaga tacgggattg tgcattttct
     1441 tttcaaacgg cacgcagtcg taaaagaaaa ttctatataa atcatccatt tgatctgtgc
     1501 cgttgatttt atctttcaga tgcagcatcg aatatcggaa agccaaatca gcaattcttt
     1561 ttgcatcgtg tggattttga gacaggccta atgaccgtac ccgcttaata aaaaatgcac
     1621 cgtcaatcaa aatggcggtt ttcatattgc ttcccctata tttgtcaaag atataaaaaa
     1681 gcccttggga tcggcatacc cgctatgatt taatgggtaa tgcgtactgc caagggcgct
     1741 atttcttttt ggattatact gatgtagata aagcctgtca aaaagttcgt gtgctgaatt
     1801 tacggattat caggattttc agacggcatt ctgttgcacg aacgggatta gaaactgtaa
     1861 ttaacccgcg ccgtataagt gcgcggcgcg ccgggcatgg catccgaacg ccaatatttt
     1921 tgattgagca gattggctgc ggcaaaggta atgttaacat ttttatggtt ccagccaagc
     1981 atggcatcaa ctcgggcaaa gcctggaagc gtagtcactt ctttatttct tgagttgtaa
     2041 ccgtagcgtt tgcctgtacc ggttacgccg atttcgccgt agaggttttc ggtcggggta
     2101 taacggaaaa acaggttgcc ggtaacgttg ctggtgttat tcaaatggat gcccactcgg
     2161 tcgggatttt ctttgtcttc aacgactttc gcctgaatca cgcccaacga accgcgcaga
     2221 tagagttttt tggggatgat ttgcccgatg gcggacaatt ccacgccacg cgaacggtgt
     2281 ttgccgccga ctgcccaagt gtagggatta ttttgtgcgt cggggcggta gcggatattg
     2341 aagcgttcga tttggtaggc ggacaatgtg gtgctgaggc ggtcgtccag ccaactgctt
     2401 ttaacgccgg tttcgtattg gcgggtgtac tcggggtcag cgttgaacac ggcagaagat
     2461 gacgtatcga tgctcaaata gccgccgcgt ccgccataag gcgcgaaacc tttgttatac
     2521 gaggcgtaaa gtgtgtgaac ggggttgatg ttccacactg cgccgatgtt ggggctgaac
     2581 gagtggccgc tgtactggcg gctgctgccg gtgagtttgt tttcggaatt aaaggtgtat
     2641 ttgtcgtaac ggccgccgag gacgaatttc aaatcgggcg tggcggagaa gatgttttgc
     2701 acaaagatgc cgtaggagtc ggctttgtgg cggttttggg tgaggatagg ctgcaatctg
     2761 cccgaagccg gccagcttgc tcggtcgtat ggatcgatgg aagcagtaaa ggcgcggctg
     2821 taacctaagg tcgggttgcg gtgttcgcgg ctgtaatcca tgcctacggt caagtggttt
     2881 tcaaaacggc cgatggtgta gtcgccgttt agcgtgaaat tggacgacag ggttttgttg
     2941 tcggtctgct gccaggcgta gttacgtttg attaagttgc cattttcgct gcctgcatag
     3001 aaatgatcaa aatcctgcgc cgccgtgcgg tgggcgagct gccattgggc acgccatttg
     3061 tcgttgaagg cgtatcaagg tcggagcgcc aaacttgcag cttgtctttg acaaaatcgt
     3121 tccggtgggc gaaccccatg cggtaaggca gtccgaagcg gtcgtacacg gacttggtcg
     3181 gactgcggtc gggcgtgcgc tccacattgt cgtaggtgta ttgccccgtc cacttcaagc
     3241 cgttgtcgag tttgacggta atgctgggcg aaaccatgac atttttgctg tctatgccgc
     3301 tgcggaacga attggcgcgc ccgacttcgc cggtgagacg gatggcgacg tttttgttca
     3361 acacttcgtt aatgtccata ttcaggctgc ggtttgccca cgaaccgtaa accgcaccga
     3421 tgttgcggct ttgtttgaag ttggcgtatt tgctgaccat gttgatgacg ccgccgccgt
     3481 tggtgcggcc gtaaagcacg gaagacgggc ctttcaggat ttccacgcgc tcgatgttgg
     3541 cagtactgcg gcgcacttgt ccgctttcgc gcacgccgtc gcggtaaata tcggatgcgt
     3601 cggcttgaaa accgcgcagg aaaatgcttt cgccgcgcat atcgtaggca gcgtcgatgc
     3661 cggcattgcc ttcgaggatg gaactcaaat cgttcgtacc gtaatttttg tttttctgga
     3721 tattgagcgt atcgatggtt tgcggcgttt ctttgatgag ctgtccgttg cgggtaacgg
     3781 cggcttcgtc gtagttgatg tagcctttga gtacgctggt gtcggactgt ccgaccacgg
     3841 aaacggtggg cagagtggcg gtgtaatgtt caccattgtc ctgcgtatcg gcggcagcaa
     3901 cagggaagga agcaataatc agcgtgggta ataaagctaa atgaaatgat attttcattt
     3961 ttatactcaa tttaacaaaa caaccgaatt atattgcctc acggaggaaa tgagaataat
     4021 ttcttttaac tatattgaac atgatatttg taaacaaagg tctcagaatg cggaaaactc
     4081 gccgcctgat actgaaaaat gccgtctgaa cagggttcag acggcatttt tttgaccgcg
     4141 aaattatgcg ccgaacactt tcaaacgttc tgcaacgggt tcaaaggtct tttcacctgc
     4201 cgccccttca ataccgccga taaccatttg tgcgcgcaac aaccagtttt cggggatatt
     4261 ccacgctttg gcaatcgccg catcgggcaa gggattgtaa tgttgcaggt ttgcacctac
     4321 gccgaccgcg gcaagtgtcg tccaaacggc atactgcacc atagcgttcg cctggtccgc
     4381 ccaaacggga aagttggcgg cataagcagg gaactgctcc tgcaaacctt tgacaacatt
     4441 ttgatcttca taaaacaaaa tagttgccgc acccgcctta aacaggttca atttttgcgc
     4501 ggtcggttca aaactgtcgg caggcacgac ggcacgcagc gcgtcttcga caaattgcca
     4561 caccttatca tgctcttcgc caaacagcac gaccacgcgg gcagattggg aattgaacga
     4621 agaaggtgtg tgcaaaacgg cgtgttcgac gatttggaca acttcatctt tgccgacggg
     4681 caggttttta tttaacgaat aaacggaacg gcggctttcg gcagcctgtt gcagagattg
     4741 acgggtcatt tcttttcctc aaaaacattc aacaaaatac actttaggca gtccggttca
     4801 ggctttacgc ttgaaaaaca gcctgtccag cgaccatgct ccgccgcccg ctgccgcgat
     4861 atagaggaat acgaagcaga acagcactgc ggactcgccg ccgttggcaa tcgggaacaa
     4921 agcatttccg gaagcgtgcg ccataaaata ggcaaccgcc atctgaccgg acaaaacaaa
     4981 cgcggcaggg cgcgcaaaca ggcccaacac cagcaaaatg ccgccgacaa tttctaaaat
     5041 actggcaagc agcaacagcc cgccgggcga accgctgccc atttcaatgg ggaaggcgaa
     5101 gattttcgac gtaccgtgca acaaaaacag gtaggcggtt acgatacgca aaacagaaag
     5161 caaaaccggt tggatacggt tgcagcaatc ggacataaaa gctcctttga tatttgtctt
     5221 catttcaggc ggtagagtat agatgtttcc ccttttcaaa tatatactgc ttttattgat
     5281 acaacttttc cacacaagaa aatatggaca ccctgttcag cctcaaggtt ttccgccaag
     5341 tcgtccaaag cggcggcttc acccgcgccg ccggcgcgct cggcatctcc accgcaatgg
     5401 caagcaaaca cgtcagccac ttggaaaaca ccgtccaagc caaactcctg caccgcaaca
     5461 gccgcaacct cagcctgacc gaagccgggg aagaatacta ccggcaatgc agttacgcgc
     5521 tcgacacgct cgacgatgcc gcgcaaaaag ccgccggggg gacggaaaaa ccgcaggggc
     5581 tgctgcgcgt aacgatgcca ctgtggtttg ccggcagcca gatatgcaac tggctggcgg
     5641 aataccgcga acgttatccc gaagtgacat tagaactgat tttggacaac cgccacgtcg
     5701 atttgattgc cgaaggcgtg gatttggcgt tgcgcgtttc ccaaaccctg tccccgtcac
     5761 tgattgcgcg cccactggcg gaaatcgaat ttgccctgct tgcctcgccc gacttcctga
     5821 ggcgcaacgg cgtgccggaa acgccggaag aagtggcggg gctgcccgcc gtcctgccga
     5881 cctacaccaa ccagcagaaa ctcgacctca cccgcaaatc ggacggcaaa aaataccggc
     5941 ttgaactgac ccccgtcatc cgtaccgaca acacgctgat gatgcgcgaa atgattaagg
     6001 cgggcgcgtg catcggttat cagccgcttt gggcggcgga acacgatttg cgctgcggca
     6061 cgctggtgag gctgctgccc ggatacgccg tcccgaccga ccggctgaat gccgtttatg
     6121 cagacagggc attcttaagc gcgaaagtcc gcagcttcat cgattttctg aacgaaaaaa
     6181 tcgccagcag gaaaggctgc cgaaatgccg tctgaaaccg cccgccccct ttatgcggac
     6241 acgtgcgccg cacacacgct cgtctggttc cgccaaaacc tccgcatccg cgacaacgcc
     6301 gccttatgca ccgccgttgc cgaaggtttg cccgttatcg gtatttggat tgacgatgcc
     6361 gaaacagaca accctcgccg cgccgcgttc taccgccaat ccgccgccga actcgcccaa
     6421 gggcttgcag ggcgcggcat cccgctctac acggcggcat cgcctgccga gctcgtccgg
     6481 ctcgccgtcc gcctcaatat ccgcgccgtc atcgccgacg aatcccatac ttttgccgac
     6541 aaactcgccg acaacgccct ttggcatgaa ttggacaaac acggcatcgc gttaaccttc
     6601 gtcaatgacc gcgccgtttt cggcaaaacc gacctgatac ccgacggcgg cacggcacac
     6661 accgatttcg accgctaccg cgaagtatgg ctcgaccgct tttccaagca gccccccgcc
     6721 ggtccggacc tattcgcggc ataccgccaa cccttccccg aaaacctttc cgccccgccg
     6781 cctgccgccc tttcagacgg catcttcctg ccgcaaaaca gcggcgaaac ggcggcttgg
     6841 cggcagtggc ggcggtttct cgaacaggcg gattcctact ccgttttaaa ggatttcccc
     6901 tcgcgcaaac acacttcgct gatgggcgcg tatttgagtg ccggctgcat ctcgccgcgc
     6961 ctgctcgcgc gggaaagcct cgaacgccgt ctgaacgcgt gggcggacaa catcatccgc
     7021 cgcgattttt tccttcaact tgccttgcag cacacggatg acgacccttc agacggcaat
     7081 cctgaacaca ccctgcgcct gacgctttgg cagcagggcc ggaccggcat tccgattatc
     7141 gatgccgcga tgcgctgttt gcacaaaacc ggcagcctcc accccgccct gagacgcttg
     7201 agcgcggatt ttttctgcca cgttttaaac ctcccccgcc gcgaaggcga gatatggttt
     7261 gcccggcagc tgaccgattt cgatgcggca atcaaccaag gcaactggtg gcttgccgcc
     7321 tcacggcaca cctgccccga cattgccgcc gcctcatacc gtaccgaccc ggacggtact
     7381 tttatcaaac ggcacattcc cgaactcgcc cacctgtccg ccgacaccgt ccacacgcct
     7441 tggcggtttg cctgttcggt cgatacccac ggctatcccg cccatcctgt cgccggtatt
     7501 ccctaagcgg tacggcaacc taaaacaaat gccgtctgaa cttccgtttc agacggcatt
     7561 gcgtccgaat gactcaatat cttccgtttt tttcactttc aatcatcagg tatgcccaaa
     7621 tcaccgccac ccaagccgac accgttccca tcgccggcaa aaaatgctgc caatccgtca
     7681 tcggcggcac agggcaacgg ccgcattcga tttccgcgcc gcccaacaac cggtacagca
     7741 acatatccgc aatccaaagc aacaacgggt atttcaaacg ctgcaaccaa aaaaccaacc
     7801 acgtccgcac gattcacctc accccccatt ccgacaacga tattgtaccg cttccgtgca
     7861 atgttaaaat aagcccactt ctaccgccgt acaaaacgcc atgctcaccg atttagaaaa
     7921 aaacgccatc cgcgaccatt accaaaacat cggcaaaaac ctgcccggtt tccgtccgcg
     7981 cgcttcgcag cgggaaatga ttgcggcggt tgccaacgct ttttcgcgga cgttggcgcg
     8041 cgaagaaggc ggcgagccgc ccaagcgcga gggcgagagc atcgccgtaa tcgaagggcc
     8101 gaccggcgtg ggcaaatcgc ttgcctacct gctggcgggc ggcatcatgg cgcagacgcg
     8161 cggcaagcgg ctgattgtga gcagcgcaac ggttgccttg caggagcagt tggtagaccg
     8221 cgacctgccg tttttggtcg aaaaaagcgg tttggaactg agcttcgcgc ttgccaaagg
     8281 gcgcggccgc tatctctgcc cctacaaact ctatcaactg acgcaaagca atgcccagca
     8341 aaacctgctc ggctttgaag cccccgccgt cttgtgggac agcaaaccca agcccgaaga
     8401 attgaagctg ctgcgcgaca ttgccgacga attttctgcc cgacggttca atggcgaccg
     8461 cgacgcctgg ccggaaaaaa tcgacgacgc gatttggctc aaagtgacca acgaccgcca
     8521 cggctgcctg aaaaccgcct gtcccaaccg tccggaatgt ccgttttacc tggcacgcga
     8581 tgtcttggaa accgtcgatg tcgtcgttgc caaccacgat cttctgcttg ccgacatcag
     8641 tatgggcggc ggcgtgattc tgcctgcgcc cgaaaacagt ttctattgca tagacgaagc
     8701 gcaccacctg cccaaaaaag ccctcagccg ttttgccgcc gaacattcat ggaatattgc
     8761 cgtttggacg ctggaaaaac tgccgcagct gaccggcaaa attgccgcgc ttaccgataa
     8821 agccgaactt gccaacctgg ccgacgaagc cgccgcatcc ttgctcgaca gcctgcacga
     8881 atggcagttc catttggcgg aagagccgtc tttaagtatg gggccgtctg aaaacgacag
     8941 acgaaccaac agcgaaccga cttggctgtg ggaagacggc aaaatccccg aaggcctcga
     9001 aaccaccgtt tccaatacgg ccattgctgc gcgcagcctg ctcaaacacg ttgtcgggct
     9061 gaacgatgcg ctttccgccg cgcgccgcga aaaagaacag gacggcgcgc tcctcgaccg
     9121 cctgaccggc gagttcggca tcttcatcgt ccgtatcgaa caaatcagcg cggtttggga
     9181 tttgctctcc accgtccccc tcgaaggcga agagccgctg gcaaaatgga taacccgccg
     9241 tgccgacgac aaaaacgact acattttcaa cgccagcccc atcagcagcg catcccacct
     9301 tgccaacagc ctgtggcggc gtgcggcagg cgcggtattg acttccgcca ccctgcaatc
     9361 cttgggcaac ttcaacctga tgctgcgcca aaccgggctg caatggctgc ccgaaaccac
     9421 caccctcgcc ctcaaaagcc cctttgactt tgaaaaacag ggcgaactct acatcccccc
     9481 catatacgcc agccccaaag accccgaagc ccacaccgcc gccgtcatcg aatggctgcc
     9541 caagcttatt tcgcccaccg aagccatcgg cacgctcgtc ttgttttcct cgcgcaaaca
     9601 aatgcaggat gtcgccctgc gcctgcccgg agactacctg ccgctcttgc tcgtacaagg
     9661 cgaattaccc aaagccgtcc tcctgcaaaa acaccaccgg gccatagaag aaggcaaagc
     9721 cagcatcatc ttcggactcg acagtttcgc cgaaggactc gacctgcccg gcaccgcctg
     9781 cgtgcaagtc atcattgcca agctgccgtt tgcgatgcct gacaacccca tcgaaaaaac
     9841 ccaaaaccgc tggatagaac agcgcggcgg caatcctttt attgaaatca ccgtccccga
     9901 agccggcatc aaactcatcc aggccgtcgg ccgcctcatc cgcaccgaac aagactacgg
     9961 ccgcgtaacc atcctcgaca accgcatcaa aacacagcgg tacggccaac aattattggc
    10021 cggcctgccg ccgtttaaaa ggatagggta aacataccgc ccttcccgca acagaaagga
    10081 aaaattcatg aactttaccc gactgctcaa ccaagtctta agcacggttc aaaaaaaagg
    10141 cggcacattc tccgacagcc cgctcaattc attcggcgga ggcgcgctgg ttgccggtat
    10201 cgcctccatg ctgctgaacg gtaaaaaccg caaaaccatt accaaaatcg gttcgaccgc
    10261 cgctttgggc tacctcgcct accggggcta tcagatgtgg cagcaaaaca aagggcgggc
    10321 aactgtaaca caaagcgatt tccaacctgc cggagaaact gaagaaacat acagccgcac
    10381 cgtattgcgc accatgatag ccgccgccgc ttcagacggc atgatagacg aagccaaacg
    10441 ccggactatc gaacaggaaa gcggcacaga ccccgaaact gccgcatggc tcgccgccga
    10501 ataccgcctg cccgcaagca tcgaagacat cgccgccgcc gtcggcaacg atgaggcgtt
    10561 ggcggcggag gcctatctgg cggcaaggtt ggtctgtgcc gatttgtcgc ggaaagaaac
    10621 cgtcttcctc gcccgcctgt cgcaggcttt gaaactggat gacaatctgg tggagagttt
    10681 ggaaaggcaa ttggggtttt gatgacacag ccggggaggg aaaatcatca aaaaacggtt
    10741 attccgaccc cggcctcaaa acgg
//
LOCUS       DAXHPV010000053        10614 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.053, whole genome shotgun sequence.
ACCESSION   DAXHPV010000053 DAXHPV010000000
VERSION     DAXHPV010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10614)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10614)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10614
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.053"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..127)
                     /locus_tag="ACFM6C_001029"
     CDS             complement(<1..127)
                     /locus_tag="ACFM6C_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HFC6158498.1"
                     /translation="MSTFFQQTAQAMIAKHIDRFPLLKLDQVIDWQPIEQYLNRQK"
     repeat_region   567..1328
                     /inference="COORDINATES: alignment:crt:1.2"
                     /inference="COORDINATES: alignment:pilercr:v1.02"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=633..668
                     /rpt_unit_seq="gttgtagctcccattctcatttcgcagtgctacaat"
     gene            complement(1392..1718)
                     /gene="cas2"
                     /locus_tag="ACFM6C_001030"
     CDS             complement(1392..1718)
                     /gene="cas2"
                     /locus_tag="ACFM6C_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004521 - RNA endonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0043571 - maintenance of CRISPR repeat
                     elements [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HFC6158499.1"
                     /translation="MSEAKFMRIIVFFDLPVITAAKRKAANQFRQFLLKDGYQMLQLS
                     VYSRIVKGRDSLQKHHNRLCANLPQEGSIRCLEITEKQYAAMKLLLGELKTQEKKVNS
                     DQLLLF"
     gene            complement(1711..2625)
                     /gene="cas1"
                     /locus_tag="ACFM6C_001031"
     CDS             complement(1711..2625)
                     /gene="cas1"
                     /locus_tag="ACFM6C_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004520 - DNA endonuclease activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0043571 - maintenance of CRISPR repeat
                     elements [Evidence IEA];
                     GO_process: GO:0051607 - defense response to virus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HFC6158500.1"
                     /translation="MTWRSLLIQNGGKLSLQRRQLLIQQNDESHTVPLEDIAVIIIEN
                     RETLITAPLLSALAEHGATLLTCDEQFLPCGQWLPYAQYHRQLKILKLQLNISEPLKK
                     QFWQHIVRQKILNQAFVADETGNDLAAKRLRTLASEVRSGDTGNREAQAAALYFQALF
                     GEKFTRNDNNAVNAALNYTYAVLRAAVARALTLYGWLPALGLFHRSELNPFNLADDFI
                     EPLRPLADLVVIHLYEQGRLKTELTPSIKQHLIKTLHCQTSIERQHFSTLAAIDKMVS
                     SFQAGVTDKNAKQLKLPEILPLKAYQYE"
     gene            complement(2691..5936)
                     /gene="cas9"
                     /locus_tag="ACFM6C_001032"
                     /gene_synonym="csn1"
     CDS             complement(2691..5936)
                     /gene="cas9"
                     /locus_tag="ACFM6C_001032"
                     /gene_synonym="csn1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742773.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004520 - DNA endonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0043571 - maintenance of CRISPR repeat
                     elements [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
                     /protein_id="HFC6158501.1"
                     /translation="MAAFKPNPINYILGLDIGIASVGWAMVEIDEEENPIRLIDLGVR
                     VFERAEVPKTGDSLAMARRLARSVRRLTRRRAHRLLRARRLLKREGVLQAADFDENGL
                     IKSLPNTPWQLRAAALDRKLTPLEWSAVLLHLIKHRGYLSQRKNEGETADKELGALLK
                     GVADNAHALQTGDFRTPAELALNKFEKESGHIRNQRGDYSHTFSRKDLQAELNLLFEK
                     QKEFGNPHISDGLKEGIETLLMTQRPALSGDAVQKMLGHCTFEPTEPKAAKNTYTAER
                     FVWLTKLNNLRILEQGSERPLTDTERTTLIDEPYRKSKLTYAQARKLLELDNTAFFKG
                     LRYGKDNADASTLMEMKAYHAISRALEKEGLKDKKSPLNLSPELQDEIGTAFSLFKTD
                     EDITGRLKDRVQPEILEALLKHISFDKFVQISLKALRRIVPLMEQGKRYDEACAEIYG
                     DHYGKKNTEEKIDLPPIPADEIRNPVVLRALSQARKVINGVVRRYGSPARIHIETARE
                     VGKSFKDRKEIEKRQEENRKDREKAATKFREYFPNFVGEPKSKDILKLRLYEQQHGKC
                     LYSGKEINLGRLNEKGYVEIDHALPFSRTWDDSFNNKVLVLGSENQNKGNQTPYEYFN
                     GKDNSREWQEFKARVETSRFPRSKKQRILLQKFDEEGFKERNLNDTRYVNRFLCQFVA
                     DHMLLTGKGKRRVFASNGQITNLLRGFWGLRKVRAENDRHHALDAVVVACSTVAMQQK
                     ITRFVRYKEMNAFDGKTIDKETGEVLHQKAHFPQPWEFFAQEVMIRVFGKPDGKPEFE
                     EADTPEKLRTLLAEKLSSRPEAVHEYVTPLFVSRAPNRKMSGQGHMETVKSAKRLDES
                     ISVLRVPLTQLKLKDLEKMVNREREPKLYDALKARLETHKDNPAKAFAEPFYKYDKAG
                     NRTQQVKAVRVEQVQKTGVWVRNHNGIADNATMVRVDVFEKGGKYYLVPIYSWQVAKG
                     ILPDRAVVAFKDEEDWTVMDDSFEFRFVLYANDLIKVQLKKDSFLGYFSGLDRATGAI
                     SLREHDLEKSKGKDGMHRIGVKTALSFQKYQIDEMGKEIRPCRLKKRPPVR"
     gene            complement(6214..9648)
                     /gene="dnaE"
                     /locus_tag="ACFM6C_001033"
     CDS             complement(6214..9648)
                     /gene="dnaE"
                     /locus_tag="ACFM6C_001033"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HFC6158502.1"
                     /translation="MTEPTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDL
                     MNEFGLVKFYKACRSAGIKPIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLT
                     EAYVGKDRNVHHAELNPEWLDNGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKY
                     AAWFPDAFYLELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEA
                     RVCIAGGWVLTDKKRPRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITL
                     GKNFLPLFPTPDGLSLDDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELN
                     IIIQMKFPGYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLF
                     ERFLNPERVSMPDFDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVG
                     RVLELPFMLCDKLSKLIPLEANKPLSLEKAMETEPQIQELIEAEEADELITLAKKLED
                     LTRGLGMHAGGVLIAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRN
                     LTIIEMAQNNIKSTTGDIVDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTA
                     HTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEFQYIHPLLEGILAPTYGIMVYQEQ
                     VMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNY
                     MEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCR
                     ANGIEFLPPDINESDYRFTPYPDMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLL
                     DFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLANIDLAMDNADQKAANANQGGL
                     FDMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSK
                     LKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVEIMVGGQTLENCADCLKADQ
                     VLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLSLALAPHHDIGGLVQLLA
                     AHQLPDTPRIPLQLSYANEKASGRLQVPPKWTVTPSSALFGELETLLGSRSVRVNW"
     gene            9973..10413
                     /locus_tag="ACFM6C_001034"
     CDS             9973..10413
                     /locus_tag="ACFM6C_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HFC6158503.1"
                     /translation="MRHRQCGFVGEQDLQPAAGQDFFDRLAAYGVSDGIFTEQAVRIH
                     RWFCGNFGYGGGRCYNNGLFLQGNIMEATVYLEDNEYIALCDLLKLAGLAESGGQAKA
                     FIAEGLVSRNGETETRKTAKIRGGEVIEFDGARLEIADGYDPEA"
     gene            10391..10600
                     /locus_tag="ACFM6C_001035"
     CDS             10391..10600
                     /locus_tag="ACFM6C_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase-like domain-containing protein"
                     /protein_id="HFC6158504.1"
                     /translation="MDTTLKHKAEALLGEPLLDEPVRPESWECCGSDCGEACIQTIYW
                     ADKARYDAQRRKLKEAGWSEDENAV"
BASE COUNT         2309 a         2583 c         2781 g         2941 t
ORIGIN      
        1 ttttttgacg gttcaggtat tgttcgattg gttgccaatc aatcacctgg tccaacttca
       61 atagcgggaa acggtcgatg tgtttggcaa tcatggcttg tgcggtttgc tgaaagaagg
      121 tgctcatgag aaatccccta aatgtcttgg tgggaattta ggggattttg gggaattttg
      181 caaaggtctc attttgcaag attttagttt aatcatcaaa cagggaacag caaaaatccc
      241 cgctgcaacg gggatttttg ttcggctctc gcctgtgtga ttaacttcac taggagaagc
      301 taaaatgctt aaattcctta tgcgtgggaa aaagttgctg ctgtccgttg aagtgaacca
      361 caagttcatt ttagcggttg ctttgctgtt aagtcaatgc agtagctaac ccgaccacaa
      421 tcaaaaaaac gcaagttttc cgcctactct gtgagtgggc ggttttttct tatttcaaat
      481 ctgtgacaca atatctgtcg cctttcttgc cataattgca ctgtgtctca atgactttaa
      541 cgcacgttcg cttatcgcaa cggctggttg tagcgcccat tctcatttcg cagtgctaca
      601 atgtttcttc ccatatactg ctgttcaaac cggttgtagc tcccattctc atttcgcagt
      661 gctacaataa tttaccaaaa caaaccaata ccatgcacgt tgtagctccc attctcattt
      721 cgcagtgcta caatgtgtgt tcggcaactc tgaccgcatg acgagttgta gctcccattc
      781 tcatttcgca gtgctacaat gacgtcaaat cgcgttacgc catggcgcag gttgtagctc
      841 ccattctcat ttcgcagtgc tacaataatc gcctcgagcc atacggaatc aagctcgttg
      901 tagctcccat tctcatttcg cagtgctaca atatacgaac tcatccggag ccacgccgag
      961 ccgttgtagc tcccattctc atttcgcagt gctacaataa aaataacaga ctcatcagaa
     1021 aaataaatgt tgtagctccc attctcattt cgcagtgcta caatccagcc tacaaaccct
     1081 acaatcgcaa tcaagttgta gctcccattc tcatttcgca gtgctacaat aaccgtctgc
     1141 accgtaaatg taatcaactt gttgtagctc ccattctcat ttcgcagtgc tacaattatc
     1201 tttctcgcca aaccaaccgt tgtagggttg tagctcccat tctcatttcg cagtgctaca
     1261 atatgttttt ggcgagatgg tcgtatgtat cggttgtagc tcccattctc atttcgcagt
     1321 gctacaatac cccaacggga aatccttatt ctataaggat ttcccgtttt atttagtctg
     1381 aaaaaatggg cttaaaataa caataattgg tctgaattga cctttttttc ttgggttttc
     1441 agctcgccca acagcagttt catggcggca tattgctttt ctgttatctc caaacagcgg
     1501 attgagcctt cttgcggaag gtttgcacat agtctattgt ggtgtttttg caacgaatcg
     1561 cggcctttga cgatacggct gtatacggaa agttgcagca tttggtatcc gtcttttaat
     1621 aaaaactggc ggaattgatt ggcggctttg cgctttgccg ccgtgataac cggtaggtcg
     1681 aagaagacga taatcctcat aaatttggcc tcactcatat tggtatgctt tcaatggtag
     1741 gatttcaggc agtttcagtt gtttggcgtt tttatcagtt acgccggctt gaaatgacga
     1801 aaccattttg tcgatggcag ccaaggtgct gaaatgttgc cgttcgatgc tggtttgaca
     1861 gtgaagggtt ttgataaggt gttgtttgat gctgggcgtc agttcagttt tcagacggcc
     1921 ttgttcgtac aaatgtataa cgaccagatc ggccaatggg cgtaagggtt cgataaagtc
     1981 atcggcgaga ttgaatggat tcaactcact tctatgaaac aagcctaatg caggcaacca
     2041 accgtataag gtcagggcgc gtgcaactgc agcccggagc acagcgtagg tatagttcaa
     2101 tgcggcattg acggcgttgt tgtcattgcg ggtaaatttt tcgccaaaga gggcttggaa
     2161 gtagagggcg gcggcttggg cttcgcggtt tcctgtatcg cccgagcgga cttcagatgc
     2221 caaagtgcgc agccgtttgg ctgcaagatc attgccggtt tcgtctgcga caaatgcttg
     2281 attcaggatt ttttggcgga cgatatgttg ccagaattgc ttttttaagg gttcgcttat
     2341 attcagctgc agtttgagga ttttaagttg gcggtgatat tgggcataag gcagccattg
     2401 tccgcagggc aggaactgct cgtcacatgt cagtaaggtt gcgccatgtt cggctaaggc
     2461 tgacagaagt ggagcggtaa tcagggtttc gcggttttcg atgatgataa cggcgatgtc
     2521 ttctaatggt acggtgtggg actcgtcatt ttgttgaatc agcagttgcc ggcgttgtaa
     2581 ggatagtttg ccgccgtttt gaatgagcag gctgcgccaa gtcatgtttt tccccttatt
     2641 tttatataaa aatccctgct tcaggccgtc tgaaacaggg atagattaat ttaacggaca
     2701 ggtgggcgtt ttttcagacg gcatggtctg atttctttgc ccatttcgtc gatttggtat
     2761 ttttgaaagg aaagggcggt tttaacgccg atacgatgca taccgtcttt accttttgat
     2821 ttttccaaat catgctcccg aagagaaatg gctccagtgg ctcgatctaa tcctgaaaag
     2881 taacctaaaa agctgtcttt tttaagttga actttaatta aatcattcgc ataaagtaca
     2941 aacctaaact caaaactatc atccattacc gtccaatctt cttcatcttt aaaagcaaca
     3001 acagccctat ccggtaaaat ccctttcgct acctgccaac tgtaaatcgg gaccagataa
     3061 tacttgccgc ctttctcaaa cacatctacg cgcaccatgg ttgcgttgtc ggcaataccg
     3121 ttatggttgc gtacccatac gccggttttc tgtacttgct ctacgcgtac ggcttttacc
     3181 tgttgggtgc ggttgcctgc cttatcgtat ttgtaaaacg gctcggcaaa ggctttggca
     3241 ggattgtctt tatgcgtctc cagccgtgct ttcagtgcgt cgtatagctt aggttcgcgc
     3301 tcccgattga ccattttttc caagtctttc agttttaact gtgtcagcgg tacgcgcaac
     3361 acgctgatgc tttcgtccag tcgtttggcg gatttgacgg tctccatatg gccttgcccg
     3421 ctcatcttcc gattgggcgc gcgtgaaaca aacagtggtg taacgtattc gtgtacggct
     3481 tcgggacgag aagataattt ttcagcgagc aatgttcgca gtttttctgg ggtatcggct
     3541 tcttcaaatt cgggtttgcc gtccggtttg ccgaagacgc gaatcatgac ttcttgtgcg
     3601 aaaaattccc aaggttgcgg gaagtgtgct ttttgatgca gcacttctcc tgtttctttg
     3661 tctatggttt tgccgtcaaa cgcgttcatc tctttatagc gtacgaatcg ggtaattttc
     3721 tgctgcatgg caacggtcga gcaggcaacg acgaccgcgt ccaaggcgtg atggcggtcg
     3781 ttttccgcac gcactttgcg taatccccaa aagccgcgca acagattggt aatttgtccg
     3841 tttgaggcaa agacacgtct tttcccttta cctgtcagca gcatatggtc ggcaacgaat
     3901 tggcacagga aacggttgac gtagcgcgta tcgttcagat tgcgttcttt aaagccctct
     3961 tcatcgaatt tttgcagcag aatccgttgt tttttactgc gtgggaaacg gctggtttcg
     4021 acacgcgctt taaattcctg ccattcgcgg ctgttgtctt tgccgttgaa gtattcgtaa
     4081 ggggtttgat tgcctttgtt ttggttttcg ctgcccaata ccagcacttt attgttgaaa
     4141 ctgtcgtccc atgtgcgcga gaacggcagg gcatggtcga tttcgacata gcctttttcg
     4201 ttcagacggc ctaagttgat ttctttgccc gaatacaggc atttgccgtg ttgttgctcg
     4261 tacaggcgca gtttcagaat atctttggat ttgggttcgc cgacaaaatt ggggaaatac
     4321 tctcggaatt tggtggcggc tttttcacgg tctttacggt tttcttcttg gcgtttttcg
     4381 atttctttgc ggtctttaaa cgattttcct acttcccttg ccgtttcaat atggatacgt
     4441 gcgggggagc cgtaacgccg aaccacgccg ttaatgactt ttctggcctg agataaggca
     4501 cgcaaaacaa cggggttgcg gatttcgtcg gcagggatgg gtggcagatc aatcttttct
     4561 tccgtattct tcttgccgta atggtctccg tagatttcgg cgcaggcttc atcgtaacgt
     4621 ttgccttgtt ccattagagg cacaattcgg cgcaatgctt tcaaggaaat ttgaacgaac
     4681 ttgtcgaagc tgatgtgttt taacagcgct tctaagattt cgggctgtac acggtctttc
     4741 agacggcctg taatgtcctc atcggttttg aacagggaga atgccgtgcc gatttcgtct
     4801 tgtaattcgg gagaaaggtt taatggggat tttttgtctt tcaatccttc tttttccagc
     4861 gcacggctga tggcatggta ggccttcatt tccatcaacg ttgaggcgtc ggcattgtct
     4921 ttaccatagc gcaagccttt gaaaaaggcg gtattgtcta gctccaaaag cttacgggct
     4981 tgtgcgtaag tcagtttgga ttttctgtat ggctcatcta taagcgtggt gcgttcggta
     5041 tcggtcaatg gccgctcgct gccttgctct aaaatacgca ggttattcag tttggttagc
     5101 cagacgaaac gttcggctgt gtaggtgttt ttagcggctt tcggctctgt cggctcaaag
     5161 gtgcaatgcc ccaacatttt ttgaacagca tcgccggata gggcggggcg ttgcgtcatc
     5221 agcagggttt caataccttc tttaaggccg tctgaaatat gcggattgcc aaattctttt
     5281 tgtttttcaa acagtaaatt cagctccgcc tgcaaatctt tgcggctgaa cgtatgcgaa
     5341 taatcgccgc gttggttgcg gatatggccg ctttctttct caaatttatt taaagccaat
     5401 tcggccggtg tgcggaaatc gcctgtctgt aaggcatggg cattgtcggc tacgccttta
     5461 agcaaagcgc caagctcctt atcggcagtt tcgccctcgt ttttccgttg cgataaatag
     5521 ccgcggtgtt tgattaaatg caacaagact gccgaccact ctaaaggcgt cagtttgcgg
     5581 tctaatgcgg ctgcgcgaag ttgccatggt gtattcggta aggatttaat caagccgttt
     5641 tcatcaaaat cggcggcttg taatacgcct tcgcgtttca ataggcgacg ggcccgaagc
     5701 aggcggtggg cgcgacggcg ggtcaggcgg cgaacactgc gtgccaaacg ccttgccatg
     5761 gcgagggagt cgcctgtttt cggtacttct gcacgctcaa atacgcgcac gcccaaatca
     5821 atcagacgga tggggttttc ttcttcgtca atttctacca tcgcccagcc gacggatgcg
     5881 atgccgatat cgagaccgag gatgtagttg attggattgg gtttgaaggc agctatttat
     5941 tactccgtaa acaacgttgc aaataatgat aatatatccg attgtcttat ttatatacaa
     6001 atagattatt gacttataat ctcacaaggg ctagaatccc aaacatattg tcgcactgcg
     6061 aaatgagaac cgttgctaca ataaggccgt ctgaaaagat gtgccgcaac gctctgcccc
     6121 ttaaagcttc tgctttaagg ggcatcgttt atttcggtta aaaaatgccg tctgaaaccg
     6181 gttttgggct tcagacggca tttgtatttt tggttaccaa ttcacgcgca ccgaccggct
     6241 gccgagcaat gtttccagtt cgccgaacaa tgcggaactc ggcgtaaccg tccatttcgg
     6301 cggcacttga agcctgcccg acgctttttc gttggcatac gacagttgca gcgggatgcg
     6361 cggcgtgtcg ggcagttggt gggcggcaag cagttgtacc agtccgccga tgtcgtgatg
     6421 cggggcgagg gcgaggctga ggctgcgggc gtagcgttcg cgtgccgttt gcagggtcat
     6481 gacttggttt gccagaatac gcagtccgtc gccgccgccg tagtcgtcgc ggctgacttt
     6541 ggattcgata atcagcactt ggtcggcttt gaggcagtcg gcgcagtttt ccaacgtctg
     6601 accgccgacc atgatttcaa cctgtccgct caaatcttca aggctgacga aggcgatttt
     6661 gccgcgcttg cccatcatgg tgcgtacggc ggtaacgaat ccggcgaggc gcacgctgtc
     6721 ttgcggtttg agtttcgaca gtttctgcgg ggcgatttgg cggacttctt gggcatacgg
     6781 gccgaacggg tggccggaca ggtaaaagcc gatgacggtt ttttcttcgg cgagtttttc
     6841 cgattcgctc cacatcggcg cgtcgatgag ccgcaccggt tcgatggcgt cttccatcat
     6901 gtcgaaaagc ccgccctgat tggcgttggc ggctttttgg tcggcgttgt ccatagcgag
     6961 gtcgatgttc gccaagagca tggcgcggtt gggttcgatg ctgtcgaatg cgccgccgcg
     7021 tatcagagct tcgagggtgc ggcggttcat gtgttctttg ccgacgcgct cacagaagtc
     7081 caagaggccg gtaaacttgc cgccgctttg ccgcgcggcg gtgatggatt cgacggcggc
     7141 ttcgcccgtg cctttaatcg cgccgagcgc gtagcggatt ttcatgtccg gatacggcgt
     7201 gaagcggtag tcggattcgt tgatgtcggg cggcaggaac tcgatgccgt tggcacggca
     7261 gtcgtcgtag aaatgcttga gctggtcggt gttgtccaat tcggacgaca tggtcgccgc
     7321 cataaattcg gcggggtagt gggctttgag ccatgcggtc tgataggaaa tcagggcgta
     7381 ggcggcggcg tgggatttgt tgaaaccgta gccggcgaat ttttccatgt agttgaagat
     7441 ttcgtcggat ttttcgcgtg aaatgccttg ttttgccgca ccttcggcga agatttcgcg
     7501 gtgtttcacc atttcttcgg gctttttctt acccatggcg cggcgcagca ggtccgcacc
     7561 gccgagcgag tagccgccga taatctgcgc cgcctgcatc acttgttcct gatacaccat
     7621 aatcccgtag gtcggcgcga ggatgccttc gagtagcgga tggatgtatt ggaattcttg
     7681 ccccttcata cgcgcgacga agtcggggat gttgtccatc gggccgggtc ggtagagcga
     7741 cacgaaggcg atgagttctt caaacttggt cgtatgcgcc gttttcagca ttttcttcat
     7801 gccggtcgac tcgaactgga atacggcggt agtgttcgca tcgcggaaga tttggtaggc
     7861 aacctggtcg tcaagcggaa tcttgccgac atcgacgata tcgccggtgg tgcttttgat
     7921 gttgttctgc gccatttcga taatggtcag gttgcgcagg cccaaaaagt cgaatttcac
     7981 caaacccaca tcttccacgt cgcctttatc gtacatggat acgggcgagg cggattcgtc
     8041 cgcctgatac acggggctgt aatcggaaat cttgcccggc gcaatcaaca cgccgcccgc
     8101 gtgcataccc agaccgcgcg ttaaatcttc cagctttttc gccaacgtaa tcagttcgtc
     8161 cgcttcttcc gcttcaatca attcctgaat ctgcggctcg gtctccatgg ctttttccaa
     8221 actcaggggt ttgttggctt ccaacggaat cagcttggac agtttgtcgc acagcataaa
     8281 cggcagttcc agcacacgcc ccacgtcgcg aatcaccgct ttggacgaca ttgtgccgaa
     8341 ggtaacaatt tggctgactg cttccgcgcc atatttttcg cgcacatatt caatcacgcg
     8401 gccgcgattt gcctgacaga agtccacgtc aaagtcgggc atggaaacgc gttcagggtt
     8461 taagaaacgt tcgaacagca gcgcgtattt gagcgggtcg aggtcggtaa tcttcagcga
     8521 atacgccacc agcgaacccg cgcccgaacc acggcccggc ccgaccggac agccgtgcgt
     8581 tttcgcccag ttgataaagt cttgtacgat aaggaaatag ccggggaatt tcatctggat
     8641 gatgatgttc agctcaaaat ccaaacgttc ctgatattcc ggcatttttg ccgcacgctc
     8701 cgcctcgtcg ggataaagct gaaccatgcg ttcctgcaaa ccctcgttgg acagtttcac
     8761 caaataatca tccagtgaca ggccgtccgg agtagggaag agcggcagga agtttttgcc
     8821 caatgtgatg tgcaggttgc agcgtttggc gatttccacc gtgttttcca aggcctcggg
     8881 caaatcggcg aaacgttcgg ccatggtttc cggcggaatg aaaaactggc tcggcgtgaa
     8941 atcgcgcgga cgttttttgt ccgtcaatac ccagccgccc gcgatgcaca cccgcgcctc
     9001 gtgcgcgttg aaatcgtcgc ggctcataaa ctgcgtcgga tgcgtcgcta ccaccggcaa
     9061 acccagttcc tccgccagct tcacgctgcc cgaaacgcaa gcctcccatt cggggcgttc
     9121 gggcaggcgt tgcagctcca gataaaacgc atcgggaaac cacgccgcat atttcaacgc
     9181 cgccgcacgc gccgcatctt cattgccgtt caacagattc acgcccactt cgccgtaatg
     9241 cgcgccgctc aaacaaatca agccgctgtt gtcgccgttg tccagccatt cgggattgag
     9301 ttccgcgtga tggacattgc ggtctttgcc gacataagcc tccgtcaaaa gctcgctcaa
     9361 gcgcagataa cccgcatcgt tgcggataat cagcatggcg cgaaacggct tgtcgggcgc
     9421 attcggattg cctatccata cgtccgccgc gccgataggc ttaatccccg cgctgcggca
     9481 ggctttataa aatttcacca aaccgaattc gttcatcaaa tcgctgatgc ccaaagcagg
     9541 caaaccgtat tcctgcgctt tggcaatcag ttttttaatc cgcaccatac cgtcggtaat
     9601 cgaaaattcg gtatgcaggc gcagcgggat gtaggtcggt tcggtcatgg caaaatcggc
     9661 gtggacaata aaaggcgtat tgtagcaggg ttgtctttag atggcggtgt aggtaatgct
     9721 gtttcagatt cagacggcat gacctgcaaa tgtttttgag cttttacgac ggcaaaaaaa
     9781 tgcctcctac cgtgtggtgg aggcttccca aggagtattg atagatataa aggactatca
     9841 aactagttat aaggaactat ataccttatt cggacggatg gcaagcagtt aaattaattt
     9901 tacgttcaaa caggtttttg atttcgtttt gatgccgatt gccggtgtat cgggcagttc
     9961 gcgtttgagg aggtgcgtca tcgtcaatgc ggattcgtcg gggaacagga tttgcagcct
    10021 gccgccggac aggatttctt tgaccggctg gcggcatacg gggtttcaga cggcattttt
    10081 acggaacagg cggtgcggat acatcgctgg ttttgcggta attttgggta cggcggcggc
    10141 aggtgctaca ataacgggct ctttctgcaa gggaacatta tggaagccac tgtctatctc
    10201 gaagacaacg aatacatcgc cttgtgcgac ctcttgaaat tggccggact tgccgaaagc
    10261 ggcggacagg cgaaagcgtt tatcgccgaa gggctggtgt cgcgcaacgg cgaaaccgaa
    10321 acccgtaaaa ccgccaaaat acgcggcggc gaagtcatcg agtttgacgg cgcacgcttg
    10381 gaaatcgcag atggatacga ccctgaagca taaagccgaa gcccttttgg gcgagccgct
    10441 tttagacgaa cccgtccgcc ccgagtcgtg ggaatgctgc ggcagcgact gcggcgaggc
    10501 gtgcattcag acgatttatt gggcagataa ggcccgctac gacgcgcaac ggcggaaatt
    10561 gaaagaagca ggttggtcgg aagacgaaaa tgccgtctga aaacggttcg gctt
//
LOCUS       DAXHPV010000054        10599 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.054, whole genome shotgun sequence.
ACCESSION   DAXHPV010000054 DAXHPV010000000
VERSION     DAXHPV010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10599
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.054"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..822
                     /gene="rfbB"
                     /locus_tag="ACFM6C_001036"
     CDS             <1..822
                     /gene="rfbB"
                     /locus_tag="ACFM6C_001036"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008460 - dTDP-glucose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009225 - nucleotide-sugar metabolic
                     process [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HFC6158505.1"
                     /translation="AESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYRQQMPSEKREA
                     FRFHHISTDEVYGDLGGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTYGLPTIV
                     TNCSNNYGPYHFPEKLIPLMILNALDGKPLPVYGDGMQIRDWLFVEDHARALYQVVTE
                     GVVGETYNIGGHNEKANIEVVKTICALLEELAPEKPAGVARYEDLITFVQDRPGHDVR
                     YAVDAAKIRRDLGWLPLETFESGLRKTVQWYLDNKTWWQNVLNGSYRLERLGTGK"
     gene            885..1751
                     /gene="rfbA"
                     /locus_tag="ACFM6C_001037"
     CDS             885..1751
                     /gene="rfbA"
                     /locus_tag="ACFM6C_001037"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008879 - glucose-1-phosphate
                     thymidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0045226 - extracellular polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HFC6158506.1"
                     /translation="MKGIILAGGSGTRLYPITRGVSKQLLPVYDKPMIYYPLSVLMLA
                     GIRDILVITAPEDNASFKRLLGDGSDFGISISYAVQPSPDGLAQAFIIGEEFIGNDNV
                     CLVLGDNIFYGQSFTQTLKQAAAQTHGATVFAYQVKNPERFGVVEFNENFRAVSIEEK
                     PQRPKSDWAVTGLYFYDNRAVEFAKQLKPSARGELEISDLNQMYLEDGSLSVQILGRG
                     FAWLDTGTHESLHEAASFVQTVQNIQNLHIACLEEIAWRNGWLSDEKLEELARPMAKN
                     QYGQYLLRLLKK"
     gene            1805..2344
                     /gene="rfbC"
                     /locus_tag="ACFM6C_001038"
     CDS             1805..2344
                     /gene="rfbC"
                     /locus_tag="ACFM6C_001038"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008830 - dTDP-4-dehydrorhamnose
                     3,5-epimerase activity [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HFC6158507.1"
                     /translation="MNIIDTAIPDVKLLEPQVFGDARGFFMETFRDEWFKTQVCERTF
                     VQENHSKSGKGVLRGLHYQTENTQGKLVRVVVGEVFDVAIDMREGSPTFGKWAGATLS
                     AQNQCQLWIPEGFAHGFCVLGDAAEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPLQTA
                     PLLSPKDLAGKVLAEAVTF"
     gene            2368..4482
                     /locus_tag="ACFM6C_001039"
     CDS             2368..4482
                     /locus_tag="ACFM6C_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HFC6158508.1"
                     /translation="MFLFSDGLQSINNNNRRKRIVKNAYIPSRGIRKIPHLSTLLPEF
                     HIYKDGKGAEAVVGWGLRPTTHKARAFATEHQLPFIALEDGFLRSLGLGVAGYPPYSI
                     VYDDIGIYYDTTRPSRLEQLILAADTMPSETLAQAQQTMDFILQHHLSKYNHAPELSD
                     DHPLRSPSKPETVLIIDQTFGDMAIQYGGADASTFELMFQTALNENPQADIWVKTHPD
                     VLCGKKQGYLTQLAQQHRVHLLAEDINPISLLQNVDKVYCVTSQMGFEALLCGKPLTT
                     FGLPWYAGWGVSDDRHPEINRLVQTQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSL
                     FDVIDYLATVKRKNDKLRGELYCVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLARVK
                     LSDDARILAWGNGKEAIVRFAEQHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMGI
                     YFNAEAPSRLEHILQNQNFDDQDFQTALKLQKMLTENHISKYNVGNSDFTAPSTDKTV
                     ILVPGQVEDDASIRYGSPQIYHNLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISP
                     EDAARYADQTAEQADILTCLQYADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLT
                     QDLLPIPRRSRRLELWQLIAGTLIHYPDYIHPETHQAINAETAAQILIRQKNMQKNNN
                     GLHRGCFAKKLGKIKQLYRSFK"
     gene            4619..5878
                     /locus_tag="ACFM6C_001040"
     CDS             4619..5878
                     /locus_tag="ACFM6C_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HFC6158509.1"
                     /translation="MKQTVLKNNLQNLLESAENILLLQGPVGDFFLRLADWLTANGKT
                     VHKFNFNAGDDYFYPPTQAHTVVFNDNYDAFPEFLQEYITQHHIQAVVCFGDTRPYHV
                     IAKRIANENQASFWAFEEGYFRPYYITLEKDGVNAFSPLPRRADFFLEQFPKLAQQEY
                     KAPTPVHGGFTPMAKNAIRYYIELFRNPRKYPDYIHHRAPNAGHYLKPWSLSILKRLN
                     YYIEDIQIAKRVEAGKYGKFFIVPLQVFNDSQVRIHCDFPSVRSFLLHVLSSFAEHAP
                     ADTNIIIKHHPMDRGFIDYWRDIKRFIKEHPELKGRVIYVHDVPLPVFLRHGLGMVTI
                     NSTSGLSGLIHNMPVKVLGRAYYDIPGITDQNTLAEFWNHPTPPDKELFHAYRMYHLN
                     VTQINGNFYSQVFFPNKKTSNSSTPVI"
     gene            6245..7651
                     /locus_tag="ACFM6C_001041"
     CDS             6245..7651
                     /locus_tag="ACFM6C_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFC6158510.1"
                     /translation="MTAAPDILYRQAAALLEQSNTAQALPLLQQAAEQGYTEAAFVLG
                     DHLLQNGHPEQALPWLEAAAAQRHPKALFTLLQQREHNGTPTGQLLNEYAWLSEQGHL
                     EAQLILMRYHTQRNDPQSLYWAELAAAQYAAPAYYHLARHHQRQGDVATAIEQYEKAA
                     ALGVTAACWQLGQIYFYGTGVSPNHAQAEHYLEQAAQAGHIAAQTLLADLLAAQRKPE
                     ALEWYRRAADKEQAEAQAKLAQYALTGELSERDPFQAARYAKAAAEKDHPEALKIMGD
                     LYRYGLGIKADNHIAHDYYHRAAALGSAAAAQKLISDAALYHPQQYEQIKTAALQQQQ
                     TETIYRLAETQAHAIGRPADYNAARKNYMEAAGFHHKNAAAALGRIYHYGLGTAQDPR
                     AAAHWYAIAAEQNHPSAQYHLACFYYHGQGVGCHVPTACYWLQAAIGNGHTSAESLIS
                     LLEQWRREAHHAIGQKAV"
     gene            7869..9083
                     /gene="gltS"
                     /locus_tag="ACFM6C_001042"
     CDS             7869..9083
                     /gene="gltS"
                     /locus_tag="ACFM6C_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015501 - glutamate:sodium symporter
                     activity [Evidence IEA];
                     GO_process: GO:0015813 - L-glutamate transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/glutamate symporter"
                     /protein_id="HFC6158511.1"
                     /translation="MEWEFNSYYTLIAATLVLLVGKFLVQKIKFLRDFNIPEPVAGGL
                     VAAIILFALHEAYGVSFKFEKPLQNAFMLIFFTSIGLSADFSRLKAGGLPLVVFTAIV
                     GGFILVQNFVGVGLATALGLDPLIGLITGSVSLTGGHGTSGAWGPNFETQYGLVGATG
                     LGIASATFGLVFGGLIGGPVARRLINKMGRKPVENKKQDQDDNADDVFEQAKRTRLIT
                     AESAVETLAMFAACLAFAEIMDGFDKEYLFDLPKFVWCLFGGVVIRNILTAAFKVNMF
                     DRAIDVFGNASLSLFLAMALLNLKLWELTGLAGPVTVILAVQTVVMVLYATFVTYVFM
                     GRDYDAAVLAAGHCGFGLGATPTAVANMQSVTHTFGASHKAFLIVPMVGAFFVDLINA
                     AILTGFVNFFKG"
     gene            9182..10198
                     /locus_tag="ACFM6C_001043"
     CDS             9182..10198
                     /locus_tag="ACFM6C_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
                     /protein_id="HFC6158512.1"
                     /translation="MYRKLIALPFALLLAACGREEPPKALECANPAVLQGIRGNIQET
                     LTQEARSFAREDGRQFVDADKIIAAAYGLAFSLEHASETQEGGRTFCIADLNITVPSE
                     TLADAKANSPLLYGETALSDIVRQKTGGNVEFKDGVLTAAVRFLPVKDGQTAFVDNTV
                     GMAAQTLSAALLPYGVKSIVMIDGKAVKKEDAVRILSGKAREEEPSKPTPEDILEHNA
                     AGGDAGVPQAAEGAPEPEILHPDDGERADTVTVSRGEVEEARVQNQRAESEITKLWGG
                     LDTDVQKELVGEQRKWAQEKISNCRQAAAQADRQEYAEYLKLQCDTRMTRERIQYLRG
                     YSID"
     gene            10209..10406
                     /locus_tag="ACFM6C_001044"
     CDS             10209..10406
                     /locus_tag="ACFM6C_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158513.1"
                     /translation="MTTVPKSRIPVKPLPEKTTDEAKVEKWRQLGAEHGLSGEWAVAA
                     RLGENGFTEEQMENIANLFGR"
     gene            10424..10573
                     /locus_tag="ACFM6C_001045"
     CDS             10424..10573
                     /locus_tag="ACFM6C_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158514.1"
                     /translation="MPSETLLSVSDGILTNTVRRRKTAGFLCVSYADVPTHRTIQKAS
                     PYVPS"
BASE COUNT         2688 a         3075 c         2505 g         2331 t
ORIGIN      
        1 gcggaaagcc atgtcgaccg ctctatcggt tcggcaggcg agtttatcca aaccaatatc
       61 gtcggcacat tcaacctact tgaagctgcg cgtgcctacc ggcagcaaat gccgtctgaa
      121 aagcgcgaag ctttccgttt ccaccatatt tccaccgatg aagtctatgg cgatttaggc
      181 ggcacggacg atttgtttac cgaaaccgcg ccctacgcgc cgtccagccc ctactctgcc
      241 tctaaagcgt ccagcgacca cctcgtccgc gcgtggttgc gtacttacgg cttgccgacc
      301 attgtaacca actgctccaa caactacggt ccttaccatt ttccggaaaa actcattcct
      361 ttgatgattc tgaacgcgct tgacggcaaa ccgctgcctg tgtacggcga cggtatgcaa
      421 atccgcgact ggctgtttgt cgaagaccac gcgcgcgcac tgtatcaggt tgttaccgaa
      481 ggcgttgtcg gcgagaccta caatatcggc ggccacaatg aaaaagccaa tattgaagtc
      541 gtcaaaacca tctgcgccct gctggaagaa ctcgctcccg aaaaaccggc cggtgtggcg
      601 cgttatgaag atttgattac tttcgtacaa gaccgccccg gccatgacgt acgctacgcc
      661 gtcgacgcag ccaaaatcag gcgggatttg ggctggctgc ctttggaaac cttcgagtcc
      721 ggcctccgca aaaccgtgca atggtatctg gacaacaaaa cctggtggca aaatgtattg
      781 aacggcagct atcgtttgga acgtttaggt actggaaaat agttttcaga cggcatcccg
      841 acgcaatgcc gtctgaaaac ccatcgcaaa ggaagaaaac aaagatgaaa ggcatcatac
      901 tggcaggcgg cagcggcacg cgcctctacc ccatcacgcg cggcgtatcc aaacagctcc
      961 tgcccgtgta cgacaaaccg atgatttatt accccttgtc ggttttgatg ctggcgggaa
     1021 tccgcgatat tttggtgatt accgcgcctg aagacaacgc ctctttcaaa cgcctgcttg
     1081 gcgacggcag cgatttcggc atttccatca gttatgccgt gcaacccagt ccggacggct
     1141 tggcacaggc atttatcatc ggcgaagaat ttatcggcaa cgacaatgtt tgcttggttt
     1201 tgggcgacaa tattttttac ggtcagtcgt ttacgcaaac attgaaacag gcggcagcgc
     1261 aaacgcacgg cgcaaccgtg tttgcttatc aggtcaaaaa ccccgaacgt ttcggcgtgg
     1321 ttgaatttaa cgaaaacttc cgcgccgttt ccatcgaaga aaaaccgcaa cggcccaaat
     1381 ccgattgggc ggtaaccggc ttgtatttct acgacaaccg cgccgtcgag ttcgccaaac
     1441 agctcaaacc gtccgcacgc ggcgaattgg aaatttccga cctcaaccaa atgtatttgg
     1501 aagacggctc gctctccgtt caaatattgg gacgcggttt cgcgtggctg gacaccggca
     1561 cgcacgaaag cctgcacgag gcggcttcgt tcgtccaaac cgtgcaaaac atccaaaacc
     1621 tgcacatcgc ctgcctggaa gaaatcgctt ggcgcaacgg ttggctttcc gatgaaaaac
     1681 tggaagaatt ggcgcgcccg atggcgaaaa accaatacgg ccaatatttg ctgcgcctgt
     1741 tgaaaaaata atgtttgagg ccgtctgaaa cttttcagac ggcctttaga tgaaagataa
     1801 aaagatgaac atcattgata ccgccattcc tgacgtaaaa ctgcttgagc cccaagtctt
     1861 cggcgacgcg cgcggctttt ttatggaaac cttccgcgac gagtggttta aaacccaagt
     1921 ctgcgaacgc accttcgtgc aggaaaacca ctccaaatcc ggcaaaggcg tattgcgcgg
     1981 cctgcactac caaaccgaaa acacacaagg caaactcgta cgcgtagttg tcggcgaagt
     2041 gttcgacgtg gccatcgata tgcgcgaagg ttcgccgact ttcggcaaat gggcgggcgc
     2101 aaccctgtcc gcgcaaaacc aatgccagct ttggataccc gaaggcttcg cgcacgggtt
     2161 ttgcgttttg ggcgacgcag cggaagtcgt gtacaaatgc acggactatt acaagcctga
     2221 agccgaacag gttttaatat ggaacgaccc gacagtcggc ataggctggc cgcttcaaac
     2281 cgcgccgctg ctgtcgccca aagatcttgc cggcaaagta ttggctgaag cggtcacgtt
     2341 ttaagactat tcaggccgtc tgaaagaatg ttcctctttt cagacggcct acaatctatt
     2401 aataacaata atcgacgaaa acgcattgtg aaaaacgcct acatcccctc tcgcggcatc
     2461 cgcaaaatcc cccatctctc caccctattg cccgagtttc atatctacaa agacggaaaa
     2521 ggagcagagg ctgttgtcgg ctggggtttg cgcccgacga cacacaaagc gcgtgctttt
     2581 gccaccgaac accagcttcc ctttattgct ttggaagacg gctttttacg ctcgcttggc
     2641 ctgggcgttg ccggctatcc tccctattcc atcgtctatg acgacatcgg catctactac
     2701 gacactaccc gcccttctcg tttggaacaa ctgattcttg ccgccgatac catgccgtct
     2761 gaaaccttgg ctcaggcgca acagacgatg gatttcatcc tgcaacacca cctgtccaaa
     2821 tacaaccacg cgcccgaact ttcagacgat catcctttac gctccccatc caagcctgaa
     2881 accgtcctca ttatcgacca aaccttcggc gatatggcca tccaatatgg cggcgcagac
     2941 gcctctacgt ttgaactgat gtttcagacg gccttgaatg aaaacccgca agccgatatc
     3001 tgggtaaaaa cccatcccga tgttttgtgc ggcaaaaaac aaggctatct gacccaactg
     3061 gcgcagcaac accgcgtcca tcttctggca gaagacatca acccgatttc tttgttgcaa
     3121 aacgtcgata aagtttattg cgttacctcg caaatgggtt ttgaggcact tttgtgcggc
     3181 aagccgctga ccaccttcgg cctgccgtgg tatgccggat ggggtgtaag cgacgaccgc
     3241 catcctgaaa tcaaccgcct tgttcaaacc caacgccgcg ccacccgcaa cttgctgcag
     3301 ctcttcgccg cagcctatct gcaatacagc cgctacctca accccaatac cggcgaagca
     3361 ggcagcctct ttgatgtcat cgactatctg gcgacggtca aacgtaaaaa cgacaaattg
     3421 cgtggcgagt tatattgcgt cggtatgtct ttgtggaaac gcgcggttgc caaaccgttc
     3481 tttaacgtac cctcttgccg tctgaaattt atctcttcca cccaaaaact ggcaagggtc
     3541 aaactgtccg acgatgcacg catcctggct tggggcaacg gcaaagaggc catcgtccgc
     3601 tttgccgaac aacaccacat ccccctgctg cgcatggaag acggctttat ccgctcggtc
     3661 ggactcggct ccaacttagt gccgccgctg tcgctcgtta ccgacgatat gggtatttac
     3721 ttcaatgccg aagccccatc ccgccttgaa cacatcctgc aaaaccaaaa cttcgacgat
     3781 caagactttc agacggcctt gaagttgcaa aaaatgctga ccgaaaacca tatcagcaaa
     3841 tacaacgtcg gcaactcaga ctttaccgcc ccatcaaccg acaaaaccgt gatcctcgtt
     3901 cccggtcagg ttgaggatga tgcgtctatc cgctatggtt cgccccaaat ctatcacaat
     3961 ctggatttgc tccgtaccgt acgcgaacga aaccccaatg cctatatcat ctacaaaccg
     4021 catcccgatg tagtcagcgg taaccgcatc ggccatattt cccctgaaga tgctgcacga
     4081 tatgccgacc aaaccgccga acaagccgac atcctgacct gtctccaata cgcagacgaa
     4141 atacatacca tgacttcgct gaccggtttt gaagccttgt tgcgcggcaa aaaagtcagc
     4201 tgctacggcc tgccttttta cgcaggctgg gggcttaccc aagatctgct ccccatcccg
     4261 cgccgtagcc gcagacttga gctttggcag ctgattgccg gcacgctcat ccactatccc
     4321 gactacatcc accccgaaac ccatcaggcc ataaatgcgg aaaccgcagc ccaaatcctg
     4381 atacgacaaa aaaatatgca aaaaaacaac aacggattac atcgcgggtg ctttgccaaa
     4441 aaattaggta aaatcaaaca actatatcga tctttcaaat aaataccatc aaagttaacg
     4501 atgcgtcata aacttgcctc tattgcggca tcattgcctt tgcatcgtta attctcttgg
     4561 cgtatgcttg aaagttcaac ctaaaactat tacataaaaa acaaaaccac attgcaacat
     4621 gaaacagacc gtcctcaaaa ataacctgca aaacctgctt gaaagcgcag aaaatatcct
     4681 gctgcttcaa ggccctgtcg gcgatttttt tctgcgcctt gccgactggc tgactgcaaa
     4741 cggcaaaacc gtacataaat tcaactttaa tgcaggcgac gactattttt atccgcccac
     4801 tcaagcgcat accgttgttt ttaacgacaa ctacgatgcc tttcctgagt ttttgcaaga
     4861 atacatcact caacatcaca tccaggccgt tgtctgcttt ggcgacacac gcccttatca
     4921 cgtcattgca aaacgcattg caaacgaaaa ccaagccagt ttctgggcgt ttgaagaagg
     4981 ctatttccgc ccctactaca tcaccttaga aaaagacggc gtcaacgcat tttccccgtt
     5041 gccgcgccgt gccgactttt ttcttgaaca attccctaag cttgcccagc aagaatataa
     5101 agcgccaacg ccggtacacg gcggttttac gcccatggca aaaaacgcta tccgttacta
     5161 tatcgagttg ttccgcaatc cacgcaaata ccccgactac atccaccacc gcgcacccaa
     5221 tgccggccat tacctcaaac cgtggtcgct ctccatcctc aagcgtttga actactatat
     5281 tgaagacatc caaatcgcca aacgtgtgga agcaggcaaa tacggcaagt tttttattgt
     5341 tcccttacag gtattcaacg acagccaagt ccgtatccat tgcgactttc ccagcgtccg
     5401 cagcttcctg ctccatgttt tgagttcatt tgccgagcac gcgcctgccg ataccaacat
     5461 catcatcaag catcatccga tggaccgcgg ttttatcgac tactggcgcg acattaaacg
     5521 ctttatcaaa gaacaccccg aactcaaagg ccgcgtgatt tatgtccatg atgtccccct
     5581 gcccgttttc ctgcgccacg gtctcggcat ggtcaccatc aacagcacca gcggcctgtc
     5641 cggactgatt cacaatatgc cagttaaggt tctcggccgt gcctattatg atattcccgg
     5701 cattactgac caaaatacct tggcagaatt ttggaatcat ccgacaccgc ctgacaaaga
     5761 gctgttccat gcctaccgaa tgtaccacct caacgtgacc caaattaacg gcaacttcta
     5821 cagtcaggtg tttttcccca acaaaaaaac ctccaactct tccacaccag taatctgact
     5881 tagcgaagga agttcaggcc gtctgaaaac atttcagacg gcctgaaaca atcaatacct
     5941 tagctactgc catgtaaata aaacacaaaa atctgcattt atcattaaca ataaattaca
     6001 aaaacagtat aatgaccgag ctgccatgag cgcataccga ctcaacctga gccctttata
     6061 acacacaaaa tatggatgta tccccaggca aaacaatata acaagccaaa catcctaaag
     6121 ataagccggc aaggaaatac actctgcaaa acgatgccga gcaatatttt tacaaagccc
     6181 tcaaccggta tcgccgccca tatgccgcag catccgtctt ccactttata tccgcccgca
     6241 aaccatgacc gccgctcctg atatcctata ccgtcaagcc gccgcccttt tggaacaatc
     6301 caataccgcc caagccctgc ccctgctgca acaggccgca gagcagggat atacggaagc
     6361 tgcttttgta ttgggcgacc atctgctgca aaacggtcat ccggagcagg cacttccatg
     6421 gttggaagcc gccgcggccc aacgccatcc caaggcactc tttaccctgc tgcaacaacg
     6481 cgaacacaac ggcaccccga ccggacagct tcttaacgaa tacgcctggc tgagtgagca
     6541 aggtcacctc gaagcccaat taattctcat gcgttaccac acgcagcgca acgatccaca
     6601 atcgctctac tgggcggagc ttgccgctgc ccaatatgcc gcacctgcgt attaccattt
     6661 ggcacgccat catcaacgcc aaggcgacgt tgcaacagct atcgaacaat acgaaaaagc
     6721 ggcagcgctc ggcgtgactg cagcctgctg gcaactcggt caaatctact tctacggcac
     6781 aggtgtcagc cccaaccacg cacaagccga acactatctc gaacaagccg cgcaagccgg
     6841 ccacatcgcc gcacaaaccc tgctggccga ccttcttgct gcccaacgca aacccgaagc
     6901 cttagaatgg tatcgtcgtg ccgccgacaa agagcaagcg gaagcacagg ccaagctggc
     6961 tcaatacgcc ctgaccggcg aactttccga acgcgatccg tttcaagcgg cacgatatgc
     7021 caaagccgcc gctgagaaag accatcccga agccctgaaa atcatgggcg acctctaccg
     7081 ctacggcctc ggcatcaaag ctgacaacca tatcgcgcac gattactacc accgtgctgc
     7141 cgcgctgggt tctgccgccg cagcacaaaa actcatcagc gacgccgcgc tgtaccatcc
     7201 gcaacaatac gaacaaatca aaactgccgc cctgcaacag caacaaaccg aaaccatcta
     7261 ccgtttggcg gaaacacaag cccatgccat cggtcgtccc gccgactata atgccgcacg
     7321 caaaaattac atggaagctg ccgggttcca ccataaaaac gcggcggctg ccttaggccg
     7381 catctaccat tacggcctcg gtacggcgca agatcctcgg gcggctgcac actggtacgc
     7441 cattgctgcc gaacaaaacc acccttccgc ccaataccac ctcgcctgtt tttactatca
     7501 cgggcaaggt gtcggctgtc atgttccgac cgcctgctac tggctgcagg ccgccatcgg
     7561 caacggccac acttcggccg aatcattaat atccctatta gaacaatggc gacgcgaagc
     7621 acaccatgcc atcggacaaa aggccgtctg aaaagattta cactcgcatt ttttgacaat
     7681 ctttaactat tcccctaata tttgccagtt atttttcacg gacacgccat tgttttcatt
     7741 tctttctgaa aacaccttgt ccgcgcatca ataccatgac actcggcgga taacgccaag
     7801 cgttgaaaca cactacatcc ggaacaaaaa cggatgctcg gaaaaatatt tctaggaggt
     7861 gaaacaacat ggaatgggaa ttcaacagtt attacacact gattgccgcc acgctcgtgt
     7921 tgctggttgg taaatttctg gttcaaaaaa tcaaattctt acgagacttc aatattcccg
     7981 agccggtcgc tggcggtttg gttgccgcga ttatcctgtt tgcgctgcac gaggcgtacg
     8041 gcgtgagctt caaatttgag aaaccgctgc aaaatgcgtt tatgctgatt tttttcacgt
     8101 ccatcggctt gagcgcggat ttttcccgtt tgaaggcggg cggtttgccg ctggtggttt
     8161 ttaccgcgat tgtgggcgga tttatcttgg tgcaaaactt tgtcggggtc ggactggcta
     8221 cggctttggg tttggacccg ctcatcggtc tgattaccgg ttcggtgtcg ctgacgggcg
     8281 gacacggtac gtcaggtgcg tggggaccta attttgaaac gcaatatggc ttggtcggcg
     8341 caaccggttt gggtattgca tcggctactt tcgggctggt gttcggcggc ctgatcggcg
     8401 ggccggttgc gcgccgcctg atcaacaaaa tgggccgcaa accggttgaa aacaaaaaac
     8461 aggatcagga cgacaacgcg gacgacgtgt tcgagcaggc aaaacgcacc cgcctgatta
     8521 cggcggaatc tgccgttgaa acgcttgcca tgtttgccgc gtgtttggcg tttgccgaga
     8581 ttatggacgg cttcgacaaa gaatacctgt tcgacctgcc caaattcgtg tggtgtctgt
     8641 ttggcggcgt ggtcatccgc aacatcctca ctgccgcatt caaggtcaat atgttcgacc
     8701 gcgccatcga tgtgttcggc aatgcttcgc tttcgctttt cttggcaatg gcgttgctga
     8761 atttgaaact gtgggagctg accggtttgg cggggcctgt aaccgtgatt cttgccgtac
     8821 aaaccgtggt gatggttttg tacgcgactt ttgttaccta tgtctttatg gggcgcgatt
     8881 atgatgcggc agtattggct gccggccatt gcggtttcgg cttgggtgca acgccgacgg
     8941 cggtggcaaa tatgcagtcc gtcacgcata ctttcggcgc gtcgcataag gcgtttttga
     9001 ttgtgcctat ggtcggcgcg ttcttcgtcg atttgattaa tgccgcgatt ctcaccggtt
     9061 ttgtgaattt ctttaaaggc tgattttccg cctttccgcc aaagcacctg caaggtttac
     9121 cgcctgcagg tgcttttgct atgatagccg ctatcggtct gcaccgtttg gaaggaacat
     9181 catgtatcgg aaactcattg cgctgccgtt tgccctgctg cttgccgctt gcggcaggga
     9241 agaaccgccc aaggcattgg aatgcgccaa ccccgccgtg ttgcaaggca tacgcggcaa
     9301 tattcaggaa acgctcacgc aggaagcgcg ttctttcgcg cgcgaagacg gcaggcagtt
     9361 tgtcgatgcc gacaaaatta tcgccgccgc ctacggtttg gcgttttctt tggaacacgc
     9421 ttcggaaacg caggaaggcg ggcgcacgtt ctgtatcgcc gatttgaaca ttaccgtgcc
     9481 gtctgaaacg cttgccgatg ccaaggcaaa cagccccctg ctgtacgggg aaaccgcttt
     9541 gtcggatatt gtgcggcaga agacgggcgg caatgtcgag tttaaagacg gcgtattgac
     9601 ggcagccgtc cgcttcctgc ccgtcaaaga cggtcagacg gcatttgtcg acaacacggt
     9661 cggtatggcg gcgcaaacgc tgtctgccgc gctgctgcct tacggcgtga agagcatcgt
     9721 gatgatagac ggcaaggcgg tgaaaaaaga agacgcggtc aggattttga gcggaaaagc
     9781 ccgtgaagaa gaaccgtcca aacccacgcc cgaagacatt ttggaacaca atgccgccgg
     9841 cggcgatgcg ggcgtacccc aagccgcaga aggcgcgccc gaaccggaaa tcctgcatcc
     9901 tgacgacggc gagcgtgccg ataccgttac cgtatcacgg ggcgaagtgg aagaggcgcg
     9961 cgtacaaaac cagcgtgcgg aatccgaaat taccaaactt tggggaggac tcgataccga
    10021 cgtgcaaaaa gagttggtcg gcgaacaacg caagtgggcg caggaaaaaa tcagcaactg
    10081 ccgacaagcc gccgcgcagg cagaccggca ggaatacgcc gaatacctca agctgcaatg
    10141 cgacacgcgg atgacgcgcg aacggataca gtatcttcgc ggctattcca tcgattaggg
    10201 gcaaaccgat gactaccgtc cccaaaagca ggattcccgt caaaccgctg cccgaaaaaa
    10261 ccacagacga agccaaagtc gaaaaatggc ggcagctcgg tgcggaacac ggtttgtcgg
    10321 gcgaatgggc agttgccgcc agattgggcg agaacggttt taccgaagaa cagatggaaa
    10381 atatcgccaa cctgttcggc agataaaggg aaaattgacg gaaatgccgt ctgaaaccct
    10441 gttatcggtt tcagacggca ttttgactaa tacggtacgc aggcgcaaaa cagccggctt
    10501 tttatgtgtt tcctatgctg atgttccaac acacaggacg atacaaaaag cgtcgcccta
    10561 tgtgccgtcc tgattcggaa agggttacgc tcctcccaa
//
LOCUS       DAXHPV010000055        10462 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.055, whole genome shotgun sequence.
ACCESSION   DAXHPV010000055 DAXHPV010000000
VERSION     DAXHPV010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10462)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10462)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10462
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.055"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            81..1046
                     /locus_tag="ACFM6C_001046"
     CDS             81..1046
                     /locus_tag="ACFM6C_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6158515.1"
                     /translation="MLRLTALAVCTALALGACSPQNSDSAPQAKEQAVSAAQTEGASL
                     TVKTARGDVQIPQNPERIAVYDLGMLDTLSKLGVKTGLSVDKNRLPYLEEYFKTTKPA
                     GTLFEPDYETLNAYKPQLIIIGSRAAKAFDKLNEIAPTIEMTADTANLKESAKERIDA
                     LAQIFGKQAEADKLKAEIDASFEAAKTAAQGKGKGLVILVNGGKMSAFGPSSRLGGWL
                     HKDIGLPAVDEAIKEGSHGQPISFEYLKEKNPDWLFVLDRSAAIGEEGQAAKDVLDNP
                     LVAETTAWKKGQVVYLVPETYLAAGGAQELLNASKQVADAFNAAK"
     gene            1210..2178
                     /locus_tag="ACFM6C_001047"
     CDS             1210..2178
                     /locus_tag="ACFM6C_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFC6158516.1"
                     /translation="MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSTE
                     LMLVSRLPRTFAIVLTGASMAVAGMIMQILMRNRFVEPSMVGASQSAALGLLLMTLLL
                     PAAPLLAKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVIEAVATFIAY
                     ENEMLQMLGVWQQGDFSGVLLGRYELLWATGILALFAYLIADQLTILGLGETVSVNLG
                     LNRTAILWSGLIIVALITSLVVVTVGNIPFIGLVVPNIISRLMGDKLRQSLPAVALLG
                     ASLVLLCDIVGRVIVFPFEIPVSTVFGVMGTALFLWLLLRKPAHAV"
     gene            2168..3142
                     /locus_tag="ACFM6C_001048"
     CDS             2168..3142
                     /locus_tag="ACFM6C_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HFC6158517.1"
                     /translation="MPSEKNIGFMAGSSRPLWVAFALLLVSCILFMTLNVKGDWDFVL
                     HLRLTKLAALLMVAYAVGVSTQLFQTLTNNPILTPSILGFDSLYVFLQTLLVFTFGGV
                     GYASLPLTGKFGFELVVMMGGSLLLFYTLIKQGGRDLSRMILIGVIFGILFRSLSSLL
                     SRMIDPEEFTAAQANMFAGFNTVHSELLGIGALILLVSAAAVWRERYRLDVHLLGRDQ
                     AVNLGISYTRNTLWILLWIAALVATATAVVGPVSFFGLLAASLANHFSPSVRHSVRLP
                     MTVCVGGILLVGGQTVFEHLLGMQAVLSVVVEFAGGLVFLYLVLKHKK"
     gene            3187..3813
                     /locus_tag="ACFM6C_001049"
     CDS             3187..3813
                     /locus_tag="ACFM6C_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FmdE family protein"
                     /protein_id="HFC6158518.1"
                     /translation="MAQEHFPSFFNQAPTITVRDALAEFLGAAENGILTYRYADAVRL
                     CGHSCPTVAGAYLMVIKGLKALYGAELPQRGDIEAFMQGGRDEGTTGVTASVVQLLTG
                     AAPETGFGGVGPAGRFARRHLLSFGAGEINGTLALRRRDTGKTVAVSLNAALQPFAPE
                     MRELMPKAVGGSASAEELERFGQLWQARVKAFLTESADDPQFVIVREV"
     gene            3895..4653
                     /locus_tag="ACFM6C_001050"
     CDS             3895..4653
                     /locus_tag="ACFM6C_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6158519.1"
                     /translation="MITIRNVSYRIGTRPILDNVSLDIPEGGITALVGPNGAGKSTLF
                     SFMARLRPLESGSIAYRGKNLAGTPTAELARTLSILTQENSIMSRITVRDLLMFGRYP
                     YHQGRPTAECRRIVNGAIEEFHLQDLSDRYLTELSGGQRQRAMIAMVFCQSTDYVLLD
                     EPLNNLDMYHARSLMQILQKLTREHKRTTVAVLHDINQAAAYADHVVAMKNGKAVLTG
                     TPEEVFTVHNIKELFDMDVDVLDYEGKKLIVHHI"
     gene            complement(4712..5050)
                     /locus_tag="ACFM6C_001051"
     CDS             complement(4712..5050)
                     /locus_tag="ACFM6C_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030234 - enzyme regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HFC6158520.1"
                     /translation="MKKIEAIVKPFKLDDVREALTEIGITGMTVSEVKGFGRQKGHTE
                     IYRGAEYAVDFLPKVKIELVLADDAVERAIDVIVEVARSGKIGDGKIFVLPVEEAIRI
                     RTGERSDAAV"
     gene            5145..5357
                     /locus_tag="ACFM6C_001052"
     CDS             5145..5357
                     /locus_tag="ACFM6C_001052"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158521.1"
                     /translation="MPETVIPAQAGIPISAFQQYLKVSVNPNFHIPNRAETTAFDLKT
                     YGSSCPPLYFLQLSAYPALGKNQKNR"
     gene            5514..9470
                     /gene="purL"
                     /locus_tag="ACFM6C_001053"
     CDS             5514..9470
                     /gene="purL"
                     /locus_tag="ACFM6C_001053"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HFC6158522.1"
                     /translation="MSVVLPLRGVTALSDFRVEKLLQKAAALGLPEVKLSSEFWYFVG
                     SEKTLDAATVEKLQALLAAQSVEQTPEAREGLHLFLVTPRLGTISPWASKATNIAENC
                     GLAGIERIERGMAVWLEGALTDEQKQQWAALLHDRMTESVLPDFQTASKLFHHLESET
                     FSTVDVLGGGKEALVKANTEMGLALSADEIDYLVENYQALQRNPSDVELMMFAQANSE
                     HCRHKIFNADFILNGEKQPKSLFGMIRDTHNAHPEGTVVAYKDNSSVIEGAKIERFYP
                     DAAENQGYRFHEEDTHIIMKVETHNHPTAIAPFAGAATGAGGEIRDEGATGKGSRPKA
                     GLTGFTVSNLNIPGLKQPWEQDYGKPEHISSPLDIMIEGPIGGAAFNNEFGRPNLLGY
                     FRTFEEKFDGQVRGYHKPIMIAGGLGSIQAQQTHKDEIPEGALLIQLGGPGMLIGLGG
                     GAASSMDTGTNDASLDFNSVQRGNPEIERRAQEVIDRCWQLGGKNPIISIHDVGAGGL
                     SNAFPELVNDAGRGAVFKLREVPLEEHGLTPLQIWCNESQERYVLSILEKDLDTFRAI
                     CERERCPFAVVGTATDDGHLKVRDDLFANNPVDLPLNVLLGKPPKTTRTDKTVTPSKK
                     PFHADDIDITEAAYRVLRLPAVAAKNFLITIGDRSVGGMTHRDQMVGKYQTPVADCAV
                     TMMGFNTYRGEAMSMGEKPTVALFDAPASGRMCVGEAITNIAAANIGDIGNIKLSANW
                     MAACGNEGEDEKLYRTVEAVSKACQALDLSIPVGKDSLSMKTVWQDGEEKKSVVSPLS
                     LIISAFAPVEDVRKTVTPELKNVEDSVLLFVDLGFGKARMGGSAFGQVYNNMSGDAPD
                     LDDTGRLKAFYNVIQQLVAEDKLLAYHDRSDGGLFATLAEMAFAARCGISADIDCLMD
                     KFLPIHHPDFQGDPAEDLSDELYNHAAIKILFNEELGAVIQIRQQDRDYVDAAFKAAD
                     LTDAVSRIGSPDFDNEFISFFGYGYFLEQNRADLQRAWQETSHAIQRLRDNPACADSE
                     FALIGDNGRSALFANLKFDVNEDIAAPFINSGAKPKIAILREQGVNGQIEMAAAFTRA
                     GFDAYDVHMSDLMAGRIHLADFKMLAACGGFSYGDVLGAGEGWAKSILFHPALRDQFA
                     AFFADPDTLTLGVCNGCQMVSNLAEIIPGTAGWPKFKRNLSEQFEARLSMVHVPKSAS
                     LILNEMQGSSLPVVVSHGEGRADFALHGGNISADLGIALQYVDGQNQVTQTYPLNPNG
                     SPQGIAGITNADGRVTIMMPHPERVYRAAQMSWKPEGWTELSGWYRLFAGARKALG"
     gene            9565..10323
                     /gene="gloB"
                     /locus_tag="ACFM6C_001054"
     CDS             9565..10323
                     /gene="gloB"
                     /locus_tag="ACFM6C_001054"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004416 - hydroxyacylglutathione hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0019243 - methylglyoxal catabolic process
                     to D-lactate via S-lactoyl-glutathione [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HFC6158523.1"
                     /translation="MKITPVKALTDNYIWMIQHGNHAVCVDPSEPSPVLEFLVRNRLM
                     LAQTWVTHPHPDHEGGAAALWRGYMESPVYGESDIEAATHTVTAGTQFTFGEGLITVW
                     ATPGHTDRHTSYLLETSDGIHVFCGDTLFSAGCGRVFTGTIEQLYDSFQRFNQLPEGT
                     LFYPAHEYTAANLRFAAHIEPDNADIQTALKAAEHTPTLPVTLAHERRVNPFLRVDLP
                     HVRDRAEALSGKTLNSSLDTFVALRELKNQYRTK"
BASE COUNT         2378 a         3140 c         2702 g         2242 t
ORIGIN      
        1 ttatcattta tcctttctaa agccgttccg gtttgtccga ccggcggctt tgccccaata
       61 tccccatttt ggagacacct atgttacgtt tgactgcttt agccgtatgc accgccctcg
      121 ctttgggcgc gtgttcgccg caaaattccg actctgcccc acaagccaaa gaacaggcgg
      181 tttccgccgc acaaaccgaa ggcgcgtccc tgaccgtcaa aacggcgcgc ggcgatgttc
      241 aaataccgca aaaccccgaa cgtatcgccg tttacgattt gggtatgctc gacaccttga
      301 gcaaactggg cgtgaaaacc ggtttgtccg tcgataaaaa ccgcctgccg tatttagagg
      361 aatatttcaa aacgacaaaa cctgccggaa ctttgttcga gccggattac gaaacgctca
      421 atgcctacaa accgcagctc atcatcatcg gcagccgcgc cgccaaagca tttgacaaat
      481 tgaacgaaat cgcgccgacc atcgaaatga ccgccgatac cgccaacctc aaagaaagtg
      541 ccaaagagcg tatcgacgcg ctggcgcaaa tcttcggcaa acaggcggaa gccgacaagc
      601 tgaaggcgga aatcgacgcg tcttttgaag ccgcgaaaac tgccgcgcaa ggcaaaggca
      661 aaggtttggt gattttggtc aacggcggca agatgtccgc cttcggcccg tcttcacgac
      721 tgggcggctg gctgcacaaa gacatcggtt tacccgctgt tgacgaagcc atcaaagaag
      781 gcagccacgg tcagcctatc agctttgaat acctgaaaga gaaaaatccc gactggctgt
      841 ttgtccttga ccgcagcgcg gccatcggcg aagagggtca ggcggcgaaa gacgtgttgg
      901 ataatccgct ggttgccgaa acaaccgctt ggaaaaaagg acaggtcgtt taccttgttc
      961 ccgaaactta tttggcggcc ggcggcgcgc aagagctgct gaatgcaagc aaacaggttg
     1021 ccgacgcttt taacgcggca aaataatgaa acggcggcat tcgatgccgt ctgaaacacg
     1081 gatgcaaacc gcctcctgtg tttcagacgg cattgcccga tacggaggct tcaaacaagg
     1141 ctttccgctc cgacggttcg gactgccttg tttgaatctt ctacgccgta acacttttcc
     1201 cttctgttta tgactgccaa acctttttcc ctcaacctga ccaacctcct gctgctggcg
     1261 gtattatttg ccgtcagcct gtcggtgggc gttgccgatt tccgctggtc ggatgtgttt
     1321 tccctgtcgg acagcaccga actgatgctg gtcagccgcc tgccgcgcac gtttgcgatt
     1381 gtgctgacgg gcgcgtcgat ggcggtggcg gggatgatta tgcagattct gatgcgtaac
     1441 cgttttgtcg aaccgtcgat ggtgggcgca agccaaagcg cggctttggg tttgctgttg
     1501 atgaccctgc tgctgccggc cgcgccgctg ctggcaaaaa tgtcggttgc cgccgttgcc
     1561 gcgctgatcg ggatgttggt ctttatgttg ctgatccgcc gcctgccgcc gaccgcgcaa
     1621 ctgatggtgc ctttggtcgg gattattttc ggcggtgtga ttgaggcggt ggccaccttt
     1681 atcgcgtatg aaaacgaaat gctgcaaatg ctcggcgtgt ggcagcaggg cgatttttcc
     1741 ggcgtgttgc tcggacgcta tgagctgttg tgggcaacgg gaattttggc tttgtttgcc
     1801 tatttgattg ccgaccaact gacgattttg ggtttgggtg aaacggtgag cgtgaacttg
     1861 gggctgaacc ggacggcgat tctgtggtcg gggctgatta ttgtggcgct gattacgtct
     1921 ttagtggtcg tgacggtcgg caatattccg tttatcggcc tagtcgtgcc gaacatcatc
     1981 agccgcctga tgggcgacaa gttgcgtcaa agcctgcctg cggtggcctt gctgggcgca
     2041 tctttggtgt tgctgtgcga tattgtcgga cgcgtgattg tgtttccgtt tgaaattccg
     2101 gtctctacgg tttttggtgt gatggggacg gctttgtttt tgtggctttt attaaggaaa
     2161 cctgctcatg ccgtctgaaa aaaatatcgg ttttatggca ggaagcagcc gtccgttgtg
     2221 ggttgccttt gcgctgttgc tggtttcctg catcttgttt atgacgctca acgtcaaagg
     2281 cgattgggat tttgtcttgc acctgcgcct gaccaaactt gccgcgctgc tgatggtcgc
     2341 ctatgcggtc ggcgtgtcca cgcaactctt ccaaacgctg accaacaatc cgattctgac
     2401 cccttcgatt ttgggtttcg attcgctata tgtgtttttg cagaccttgc tggtgtttac
     2461 gttcggcggc gtgggctatg cttccctgcc gttgacgggc aaattcggct ttgaactggt
     2521 tgttatgatg ggcggttcgc tgctgttgtt ctacacgctt atcaaacagg gcggacgaga
     2581 tttgtcgcgc atgattttaa tcggcgtgat tttcgggatt ttgttccgca gcctgtcgtc
     2641 gttgctttcg cgcatgattg accccgaaga atttaccgcc gcgcaggcga atatgtttgc
     2701 cggattcaat accgtccaca gcgagctttt gggcataggc gcgctgattc tgctcgtcag
     2761 cgcggcagcg gtttggcgcg aacgctaccg cttggacgta caccttttgg ggcgcgacca
     2821 agccgtcaat ttgggcatca gctacacgcg caacaccttg tggatactgc tttggattgc
     2881 cgcgctggtg gcgacggcga ccgccgtggt cggcccggta agctttttcg ggcttctcgc
     2941 cgcctcgctt gccaaccact tttccccgtc cgtgcgccat tccgtccgcc tgccgatgac
     3001 ggtttgtgtc ggcggtattc ttctggtcgg cggacagacc gtattcgaac acctgctcgg
     3061 tatgcaggca gtgttgagcg tggtagtaga atttgcgggc ggactcgttt tcctctatct
     3121 cgttttaaaa cacaaaaaat gacggatgcc gtctgaacgg ccgtccgcct cgacaggaca
     3181 aaacatatgg cacaagaaca tttcccatca ttcttcaacc aagccccgac catcaccgtc
     3241 agggacgcgc ttgccgaatt cctcggcgcg gccgaaaacg gcatcctcac ttaccgctac
     3301 gccgatgccg tgcgcctgtg cggacattcc tgcccgaccg tcgcgggcgc gtacctgatg
     3361 gttatcaaag gtctgaaagc cctttacggc gcagagctgc cgcaacgcgg cgacatcgaa
     3421 gcctttatgc agggcgggcg agacgaaggc acgaccggcg ttaccgcttc cgtcgtccaa
     3481 ctcctgaccg gcgcggcacc cgaaaccggc tttggcggcg taggcccggc cggacgcttt
     3541 gcccgccgcc acctcttgtc ctttggtgca ggcgaaatca acggcacact cgcgctccgc
     3601 cgccgcgata ccggcaaaac cgttgccgtc agcctcaacg ccgccctgca accctttgca
     3661 cccgaaatgc gcgaacttat gcccaaagcc gtcggcggca gcgcaagcgc agaagaactc
     3721 gaacgcttcg gacaactctg gcaggcgcgc gttaaagcat ttttgaccga atcggcggac
     3781 gacccgcagt tcgtcatcgt ccgcgaagtg tgagcgttca gacggcattc cgaatttcaa
     3841 atgccgtctg aacccccgcc aaacaacaaa cctacgcccg acaagcatcc gcctatgatt
     3901 accatccgca acgtcagcta ccgcatcggc acacgcccca tcctcgacaa cgtcagcctc
     3961 gacatccccg aaggcggcat taccgccctc gtcggcccca acggtgcggg caaatccacc
     4021 ctgttttcct ttatggcgcg gctgcgcccg cttgaaagcg gcagcatcgc ctaccgcggc
     4081 aaaaaccttg ccggcacccc caccgccgaa ctcgcccgca cgctctccat cctcacccaa
     4141 gaaaacagca tcatgagccg catcaccgtg cgcgacctgc tgatgttcgg ccgttacccc
     4201 taccatcaag gcagaccgac tgccgaatgc cgccgtatcg ttaacggtgc aatcgaagaa
     4261 ttccacctgc aagacctctc cgaccgctat ctgaccgagc tctccggcgg ccaacgccaa
     4321 cgcgccatga ttgcgatggt gttctgccaa agcaccgact acgtcctttt ggacgaaccg
     4381 ctgaacaacc tcgatatgta tcacgcccgc tcgctcatgc agattctgca aaagctcacg
     4441 cgcgaacaca aacgcaccac cgtcgccgta ttgcacgaca ttaaccaggc cgcagcctac
     4501 gccgaccacg tcgtcgccat gaaaaacggc aaagccgtcc tgaccggcac gcccgaagaa
     4561 gtgttcaccg tacacaacat caaagaactg ttcgacatgg atgtggacgt actcgactac
     4621 gaaggcaaaa aactcatcgt ccaccatatc tgaagctcaa aaagaaaatg ccgtctgaaa
     4681 acctttcaga cggcatttcc attccaaacg ctcaaaccgc cgcgtccgaa cgttcgcccg
     4741 tgcggatacg gattgcctcc tcgaccggca gcacaaaaat cttgccgtcg ccgattttgc
     4801 ccgaacgcgc cacctcgaca atcacgtcaa tcgcgcgttc cacagcgtca tccgccaaca
     4861 ccagctcgat tttgaccttg ggcaggaaat cgacggcgta ttccgcaccg cgatagattt
     4921 ccgtatgccc cttctgcctg ccgaaccctt tgacctcgct gacggtcatc cccgtaatgc
     4981 cgatttccgt caacgcctcg cgcacgtcgt cgagtttgaa cggtttgaca atcgcctcga
     5041 tttttttcat cacattctcc attaattaac gtaaacaaac gacaaatata gcagaaaccg
     5101 ccggcaaacg ataaacggta ctgttcgccc ggcgatgcgg cgatttgccg gaaaccgtca
     5161 ttcccgcgca ggcgggaatc ccgatctctg catttcagca atatttaaag gtttctgtaa
     5221 atccaaactt ccatattcct aaccgtgcgg aaacgacggc atttgatcta aaaacatacg
     5281 gaagcagttg cccgcccctc tacttcctgc aattatccgc atacccggct ttgggtaaaa
     5341 atcagaaaaa cagataaaac ccttattcct taatatcttc agacggcacc tgtattttcc
     5401 ccaactgtat gccgtctgaa gattgtcaac attttaagcc aaaatatcca agcaatacaa
     5461 acctgtccgg cgtataatcc ctctttttcc caaccgcatt tgagagccga attatgtctg
     5521 ttgtgttgcc cttgcgcggc gttaccgccc tttccgattt ccgtgttgaa aaactcttgc
     5581 aaaaagccgc cgcactcggt ctgcccgaag tcaaattaag cagcgaattt tggtatttcg
     5641 tcggcagcga gaaaacactg gatgccgcaa ctgtcgaaaa actgcaagcc ttactggcag
     5701 cgcaaagcgt tgaacaaacg cccgaagcgc gcgagggctt gcatttattt ttggtcacgc
     5761 cccgtttggg tacgatttcg ccttgggctt ccaaggcaac caatatcgcg gaaaactgcg
     5821 gtttggcagg catcgagcgc atcgagcgcg gcatggcggt gtggctggaa ggtgcgctta
     5881 ccgatgaaca gaaacagcaa tgggcggctt tgctgcacga ccgcatgacc gaatccgtat
     5941 tgcccgattt tcagacggca tccaaattat tccaccatct cgaatccgaa accttttcca
     6001 ccgttgatgt tttaggcggc ggtaaagagg ctttggtcaa agccaatacc gaaatgggtt
     6061 tggcactctc cgccgacgaa atcgattatc tggttgaaaa ctatcaggct ttgcagcgca
     6121 atccgtccga tgttgaattg atgatgttcg cgcaggcaaa cagcgaacac tgccgccaca
     6181 aaatcttcaa cgccgatttc atcctcaacg gcgaaaaaca accgaaatcc ctgttcggca
     6241 tgatacgcga cacgcacaac gcgcatcccg aaggtacggt cgtcgcttat aaagacaatt
     6301 cgtccgtaat cgaaggcgcg aaaatcgagc gtttctatcc ggatgcggcg gaaaaccaag
     6361 gctaccgttt ccacgaggaa gacacgcata tcatcatgaa agtggaaacg cacaaccacc
     6421 cgaccgccat cgcgccgttt gcgggcgcgg cgacgggcgc gggcggcgaa atccgcgacg
     6481 aaggcgcaac gggcaaaggt tcgcgtccga aagcaggctt gaccggcttt accgtgtcca
     6541 acctcaacat ccccggcctc aaacagccgt gggaacaaga ttacggcaag ccggaacata
     6601 tttcctcgcc gctggacatt atgattgaag gccccatcgg cggcgcggcg ttcaacaacg
     6661 aattcggccg ccccaacctc ttgggctact tccgcacctt tgaagaaaaa tttgacggtc
     6721 aggttcgcgg ctatcacaaa ccgattatga ttgccggcgg tctgggcagc attcaggcgc
     6781 agcagacgca taaagacgaa atccccgaag gcgcgttgct gatccaactg ggcggcccgg
     6841 gtatgcttat cggcttgggc ggcggcgcgg cttcttcgat ggataccggt acaaatgacg
     6901 cgtctttgga cttcaactcc gtgcaacgcg gcaaccccga aatcgaacgc cgcgcgcagg
     6961 aagtgatcga ccgctgctgg cagctcggcg gcaaaaaccc gattatctcc atccacgacg
     7021 tgggcgcggg cggtttgtcc aacgccttcc ccgaactcgt caacgatgcc ggacgcggcg
     7081 cggtattcaa gctgcgcgaa gtgccgttgg aagaacacgg tttaacgcct ttgcaaatct
     7141 ggtgtaacga atcgcaagag cgttatgtgt tgtcgatttt ggaaaaagat ttggacacct
     7201 tccgcgccat ctgcgaacgc gaacgctgcc cgtttgccgt ggtcggcacg gcgaccgacg
     7261 acggccattt gaaagtgcgc gacgatttgt tcgccaacaa ccccgtcgat ttgccgttga
     7321 acgtcttgct cggcaaaccg cccaaaacca cgcgtaccga caaaacagtt acgccatcta
     7381 aaaaaccgtt tcacgccgac gatatcgaca tcaccgaagc cgcctaccgc gttttgcgcc
     7441 tgcctgccgt agccgccaaa aacttcctga ttaccatcgg cgaccgcagc gtcggcggca
     7501 tgacccaccg cgaccaaatg gtcggcaaat accaaacccc cgtagccgac tgcgccgtta
     7561 ccatgatggg cttcaatacc tatcgcggcg aagcaatgtc tatgggcgaa aaaccgaccg
     7621 ttgccctgtt tgacgcgccc gcctcgggca gaatgtgcgt cggcgaagcc atcaccaaca
     7681 tcgcggcagc caatatcggc gacatcggca acatcaagct ctccgccaac tggatggcgg
     7741 cgtgcggcaa cgaaggcgaa gacgaaaaac tctaccgcac cgtcgaagcg gtttccaaag
     7801 cctgtcaggc attggatttg agcatccccg tgggcaaaga cagcctgtcg atgaaaactg
     7861 tgtggcagga cggcgaagag aaaaaatccg tggtttcgcc cttgagcctg attatctccg
     7921 cgtttgctcc agtggaagac gtacgcaaga ctgttacacc cgagttgaaa aacgtcgaag
     7981 acagcgtatt gctgtttgtc gatttgggct tcggcaaagc gcgtatgggc ggctcggcgt
     8041 tcggtcaggt gtacaacaat atgagcggcg acgcgcccga tttggacgac acaggccgtc
     8101 tgaaagcgtt ttacaacgtg attcaacagc ttgtcgccga agacaaactt ttggcgtatc
     8161 acgaccgcag cgacggcggt ttgtttgcga cactggcgga aatggcgttt gcggcacggt
     8221 gcggtatcag tgccgatata gattgcctga tggataaatt cctgccgatt catcacccgg
     8281 atttccaagg cgacccggcc gaggacttat ctgacgaact ttataatcat gccgccatta
     8341 aaatcttatt caatgaagaa ttaggtgcgg ttatccaaat ccgccaacaa gatagggatt
     8401 atgttgatgc ggcatttaaa gcggccgact taaccgatgc ggtcagccgg attggctctc
     8461 ctgattttga caatgagttt atttctttct ttggttacgg ctatttcttg gaacaaaacc
     8521 gcgccgacct gcaacgcgca tggcaggaaa ccagccacgc catccaacgc ctgcgcgaca
     8581 accctgcctg cgccgacagc gagttcgcat tgattggcga caacggacgc agcgcattgt
     8641 ttgccaacct gaaattcgac gtgaacgaag acatcgccgc gccgtttatc aacagcggcg
     8701 cgaaacccaa aatcgccatc ctgcgcgaac agggcgtaaa cgggcaaatc gaaatggccg
     8761 ccgcctttac ccgcgccgga ttcgatgctt acgacgtgca tatgtccgac ctgatggcag
     8821 gccgcatcca cctcgccgac ttcaaaatgc tggcggcgtg cggcggcttc agctacggcg
     8881 acgtactcgg cgcgggcgaa ggctgggcga aatcgattct gttccaccct gctctgcgcg
     8941 accagtttgc cgccttcttc gccgacccgg acacgctgac attgggcgtg tgcaacggct
     9001 gccaaatggt cagcaacctt gccgaaatca tccccggcac ggcaggctgg ccgaagttca
     9061 aacgcaacct gagcgaacag tttgaagcgc gcctaagcat ggttcacgtc cccaaatccg
     9121 cgtcgctgat tctgaacgaa atgcaaggct ccagcctgcc cgtcgtcgtc agccacggcg
     9181 aaggccgcgc cgacttcgca cttcacggcg gcaacatttc tgccgatttg ggcattgcgc
     9241 tgcaatatgt ggacggtcaa aaccaagtta cccaaaccta tccgctcaac cccaacggct
     9301 cgccgcaagg catcgccggc attaccaacg ccgacggccg cgtgaccatc atgatgcccc
     9361 accccgaacg cgtgtaccgc gccgcacaaa tgagctggaa accggaaggc tggacggaac
     9421 tgtccggctg gtaccgcctc tttgccggcg cacgtaaagc cttgggctaa ccgccctact
     9481 caaaccaatg ccgcctgaag aatatttcag acggcgttcc ggcataccat cctttaaacg
     9541 gtatccgtcc accgaggaac actcatgaaa atcacccccg tcaaagccct aaccgacaac
     9601 tacatctgga tgatacagca cggcaaccat gccgtctgcg tcgacccttc cgaaccctcg
     9661 cccgtcttgg aattcctcgt ccgcaaccgc ctcatgcttg cccaaacatg ggtaacgcac
     9721 ccccatcccg accacgaggg cggtgcggcg gcactctggc gcggctacat ggaatcgccc
     9781 gtttacggcg aatccgacat cgaagcagca acccacaccg taaccgccgg cacccaattc
     9841 accttcggcg aagggttaat caccgtttgg gcaaccccgg gccacacaga ccgccacacc
     9901 agctaccttc tcgaaacttc agacggcata cacgtctttt gcggcgacac ccttttttcc
     9961 gccggctgcg gacgcgtgtt taccggcaca atcgaacagc tttacgacag cttccaacgc
    10021 ttcaaccaat tacccgaagg caccctgttc tacccggcgc acgaatacac cgccgccaac
    10081 ctgcgtttcg ccgcccatat cgagccggac aacgccgaca ttcagacggc actgaaagcg
    10141 gcagaacaca cgcctaccct gcccgttacc ctcgcgcacg aacgccgcgt caacccgttt
    10201 ttgcgcgtcg acctgccgca cgtcagagac cgcgccgagg cattgagcgg gaaaacgtta
    10261 aacagcagcc tcgatacctt tgtcgcgctg cgtgaactta aaaaccaata ccggacgaaa
    10321 taaaacaacg ggaaaacgca gccattccta ggatttttat taaaatctta aataaaatca
    10381 tacaatcatc gccaatagac gaaaggacac cgttgcctta taatcaaaca aaaacaaaat
    10441 atataatata gtggattgaa tt
//
LOCUS       DAXHPV010000056        10432 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.056, whole genome shotgun sequence.
ACCESSION   DAXHPV010000056 DAXHPV010000000
VERSION     DAXHPV010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10432
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.056"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            154..1038
                     /locus_tag="ACFM6C_001055"
     CDS             154..1038
                     /locus_tag="ACFM6C_001055"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YicC/YloC family endoribonuclease"
                     /protein_id="HFC6158524.1"
                     /translation="MSSGNIHIHSMTGFANAAAECGSKRINLDIRAVNHRFLDIQIRM
                     PDDLRHLESGIREKISSHLARGKVECKIQIQDTENGNQSLELNRDLVGQLAEINKDLR
                     KHHDLAKLGVADILRFPGVLASQRENTDALAKVIADLTDSALKDFTAARRREGKKLGE
                     HLLQRLESMEEIIGALSEIFPALVEAHKEKIRARLAEAVGDINNDRLQQEFALFIQKS
                     DIDEEFSRLRTHIAEVRRIVTEHKGSSGKRLDFLMQELNREANTLGSKSIAAECTQAS
                     VELKVLIEQMREQVQNIE"
     gene            complement(1122..1637)
                     /locus_tag="ACFM6C_001056"
     CDS             complement(1122..1637)
                     /locus_tag="ACFM6C_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HFC6158525.1"
                     /translation="MMILKTAPLKRRFAAMLYEMLLVGAATCLAALFAGIAAIFLNPV
                     SIAVSALVTSILIMGAWWLYFRANWHGQGQTLAMRTWKIGLCDLNGIQPSLHLLRLRF
                     IWACIFIVFIPMLAYAGLRHFLGIPPKGAAGAALIWLILPWGFALLNPDRQFLYDFLA
                     GTRLVAVKGKP"
     gene            complement(1712..2131)
                     /locus_tag="ACFM6C_001057"
     CDS             complement(1712..2131)
                     /locus_tag="ACFM6C_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158526.1"
                     /translation="MDNKTKLRLGGLILLTTAVLSLIIVLIVDSWPLAILLAAIIVAA
                     AAGGFVWTSRRQQRQFIERLKKFDIDPEKGRINEANLRRMYHSGGQHQKDAITLICLS
                     QKCSVDEAHAMFKKRPTRQEINQMAAKQSRGQKRPHR"
     gene            complement(2252..3250)
                     /gene="holA"
                     /locus_tag="ACFM6C_001058"
     CDS             complement(2252..3250)
                     /gene="holA"
                     /locus_tag="ACFM6C_001058"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HFC6158527.1"
                     /translation="MAAHIGRIDTDAPLKPLYVIHGEEELLRIEALDALRAAAKKQGY
                     LNREVYTADNAFDWNELLQTAGSAGLFADLKLLELHIPNGKPGKTGGEALQDFAARLP
                     EDTVTLVLLPKLEKTQLQSKWFAALAAKGEVWEAKPVGAAALPQWIRGRLDKIGLGIE
                     ADALALFAERVEGNLLAARQEINKLGLLYPKGHTVNIDQAQTAVANVARFDAFQLAGA
                     WMKGDVPRVCRLLDGLQEEGEEPVLLLWAVAEDVRTLIRLAAALKQGQSIQSVRNSLR
                     LWGEKQTLAPIAVRRISVVRLLDALKTCAQIDRIIKGAEDGDAWTVFKRLVVSLAE"
     gene            complement(3252..3731)
                     /gene="lptE"
                     /locus_tag="ACFM6C_001059"
     CDS             complement(3252..3731)
                     /gene="lptE"
                     /locus_tag="ACFM6C_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0043165 - Gram-negative-bacterium-type cell
                     outer membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HFC6158528.1"
                     /translation="MNKLFLTAAVLMLGACGFHLKGADGISPPLTYRSWHIEGGQALQ
                     FPLETALYQASGRVDDAAGAQMTLRIDSVSQNKETYTVTRAAVINEYLLILTVEAQVL
                     KRGEPVGKPMTVSVRRVLAYADNEILGKQEEEAALWAEMRQDAAEQIVRRLTFLKAE"
     gene            complement(3783..4562)
                     /gene="pgeF"
                     /locus_tag="ACFM6C_001060"
     CDS             complement(3783..4562)
                     /gene="pgeF"
                     /locus_tag="ACFM6C_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HFC6158529.1"
                     /translation="MKTITETLNLAPKGKNFLTADWPAPANVKTLITTRNGGVSQGAY
                     QSLNLGTHVGDNPEAVLRNREIVQQQVGLPVAYLNQIHSTIVVNAAEALDGTPDADAS
                     VDDTGKVACAVMTADCLPVLFCDRAGTTVAAAHAGWRGLAGGVLQNTIAAMKVPPVEM
                     MAYLGPAISADAFEVGQDVFDAFCTPMPEAAAAFEGIGGGKFLADLYALARLILKREG
                     VGGVYGGTHCTVLERDTFFSYRRDGATGRMASLIWLDGNAV"
     gene            4715..4939
                     /locus_tag="ACFM6C_001061"
     CDS             4715..4939
                     /locus_tag="ACFM6C_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158530.1"
                     /translation="MMPLYTFSELYMFQQGMAHQAPHCVLPERDYPPIRFYRYKQMGF
                     NRKGMGIKSISDISRAMPSENQSPLSDGIV"
     gene            5016..5963
                     /locus_tag="ACFM6C_001062"
     CDS             5016..5963
                     /locus_tag="ACFM6C_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
                     /protein_id="HFC6158531.1"
                     /translation="MNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLL
                     GIIMFGMGLTLKPSDFDILFKHPKAVIIGVIAQFAIMPATAWLLSKLLNLPAEIAVGV
                     ILVGCCPGGTASNVMAYLARGNVALSVAVTSVSTLISPLLTPAIFLMLAGEMLEIQAA
                     GMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKI
                     MESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKTLTIEVGMQNSGLAAALAAAH
                     FAAAPVVAVPGALFSVWHNISGSLLATYWAAKAGKHKKP"
     gene            complement(6116..7240)
                     /gene="rluD"
                     /locus_tag="ACFM6C_001063"
     CDS             complement(6116..7240)
                     /gene="rluD"
                     /locus_tag="ACFM6C_001063"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HFC6158532.1"
                     /translation="MQNTSFDNESDYSDDSDFASASETENRIGLTVPLELAGGRLDAV
                     LAKLLPDYSRSRLTSWIKEGAVIVNDKPSQPKDKMIGGEQICVTVRPSEENLAFVPEP
                     MALDIIYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCPELSQVPRAGIVHRLD
                     KETSGLMVVAKTLSAQNSLVRQLQERTVKRIYRAVANGIVPFDGKIETQIGRDPHNRL
                     KMAVVKFGGKPAVTHVKVLERYLTHSYIECSLETGRTHQIRVHMREANHPLAADPVYG
                     NPRHPCGDTVKEAVKSLGARQALHAYRLSFTHPESGETVSFEAPIPDDIYHLLSVLRL
                     EAGLDSSLSNEEEWQDKFGADDDDDWNEDDYDVEVVYVRE"
     gene            7239..8042
                     /locus_tag="ACFM6C_001064"
     CDS             7239..8042
                     /locus_tag="ACFM6C_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HFC6158533.1"
                     /translation="MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQD
                     ELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAYAYYKDDEKDKALAAIERFRRLH
                     PQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
                     KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESL
                     AILELAYQKLGKPQLAADTRRVLETNFPKSPFLTHAWQPDDMPWWRYWH"
     gene            complement(8117..10336)
                     /locus_tag="ACFM6C_001065"
     CDS             complement(8117..10336)
                     /locus_tag="ACFM6C_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0009290 - DNA import into cell involved in
                     transformation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HFC6158534.1"
                     /translation="MFRRWFLPCWVVGAAASFALPVVPHWLFWLAAFAVFAVFARRFA
                     FAGLMLCVLAGAAYGVFRTEAALSSQWWAEAVSGVPLTVEVADMPRSDGRRVQFAAKA
                     VDSGGRTFDLLLSDYKRREWAVGSRWRITARVHPVVGELNLRGLNREAWALSNGIGGA
                     GTVGADRVLLHGGSGWGIAVWRSRISRNWQQADADGGLSDGIGLMRALSVGEQSALRP
                     ELWQAFRPLGLTHLVSISGLHVTMVAVMFAWLAKRLLACSPRLPARPRVWVLAAGCAG
                     ALFYALLAGFSVPTQRSVLMLAAFAWAWRRGRLSAWATWWQALAAVLLFDPLAVLGVG
                     TWLSFGLVAALIWACSGRLHEGKRQTAVRGQWAASVLSLVLLGYLFASLPLISPLVNA
                     VAIPWFSWVLTPLALLGSVVPFAPLQQLGAFLAEYTLRFLVWLADVSPEFAVASAPLP
                     LLVLAVCAALLLLLPRGLGLRPWAVLLLAGFVFYRSPGVPENEVAVTVWDAGQGLSVS
                     VQTANHHLLFDTGTAAAAQMGIVPSLNAAGVRRLDKLVLSHHDSDHDGGFQAVGKIPN
                     SGIYAGQPEFYEGARHCAEQRWQWDGVDFEFLMPSERKNIDDNGKSCVLRVVAGGAAL
                     LVTGDLDTKGEESLVGKYGGNLYSQVLVLGHHGSNTSSSGVFLNAVSPEYAVASSGYA
                     NAYKHPTEAVQNRVRAHGIKLLRTDLSGALQFGLGRGGVKAQRLRGYKFYWQKKPFE"
BASE COUNT         2453 a         3139 c         2634 g         2206 t
ORIGIN      
        1 gttaatccac tatacatttc ccttccttgc agcaacaaaa gcgcgtgatt ccaatctgcc
       61 gctgcaaaat cttcaatttt tcacacccga aaacgcttgc cgccatacag atgtgatata
      121 ttgattccat tttaacgggc ttcggagaac gacatgagca gcggaaatat ccacatccac
      181 agcatgaccg gctttgccaa cgcggcggcg gaatgcggca gcaaacgcat caacctcgac
      241 atccgcgccg tcaaccaccg ctttttggac attcaaatca ggatgccgga tgatttgcgc
      301 catttggaaa gcggtatccg cgagaaaatt tcatcccatc tggcacgcgg caaagtcgaa
      361 tgcaaaatcc aaattcaaga tacggaaaac ggcaatcagt ctttggaact gaatcgcgat
      421 ctggtcggac agcttgccga aatcaacaaa gacctccgca agcatcacga tttggcaaaa
      481 ctgggcgttg ccgacatcct gcgtttcccc ggcgtattgg caagccaaag ggaaaatacg
      541 gacgcattgg caaaggttat tgccgatttg accgattcgg cactgaaaga ctttaccgcc
      601 gcacgccgac gcgaagggaa aaaattgggc gaacacctgc tgcaacgcct cgagtctatg
      661 gaagaaatca tcggggcatt gagcgaaatc ttccccgcgc tagtggaagc gcataaagaa
      721 aaaatccgcg cccgccttgc cgaagccgtc ggcgacatca ataatgacag gctgcaacag
      781 gaatttgccc tctttattca aaaatccgac atcgacgaag aattcagccg cctgcgcacc
      841 cacattgccg aagtgcgccg tatcgttacc gaacacaaag gcagcagcgg caaacggctg
      901 gacttcctga tgcaggaatt aaaccgcgaa gccaacactt tgggcagcaa atccattgcc
      961 gccgaatgca cccaagcctc ggtcgaactg aaagtcttaa tcgagcagat gcgggaacaa
     1021 gtgcagaata tcgaataatc ggtttccccg ataagcaaat gccgtctgaa agccctttca
     1081 gacggcattt tttcaggttg aaacctttgc ggtataaagg cttaaggctt tcctttgacc
     1141 gccaccaatc ttgttcctgc aagaaaatca tacagaaact gccgatcggg attcagcagt
     1201 gcgaaccccc acggtaaaat cagccaaatc aatgccgcgc cggccgcgcc cttgggcgga
     1261 atgccgagga agtggcgtaa tccggcatag gctaacatag ggataaatac gataaatatg
     1321 cacgcccaaa taaagcgcag gcgcagcagg tgcaaagacg gctgtatgcc gttaaggtcg
     1381 cacaagccga ttttccatgt cctcatcgcc aaggtctgcc cctgaccatg ccagttggcg
     1441 cggaaataaa gccaccatgc tcccattatc aggatacttg ttaccaatgc agaaaccgcg
     1501 atagaaacgg gattcagaaa aatggcggca ataccggcaa acaatgctgc caaacaggtt
     1561 gccgcaccga ccagcagcat ttcgtacagc atggcggcaa agcggcgttt gagcggggcg
     1621 gttttcagta tcatcatctt ttcaatcgga atatgccgtc tgaaacgcca acaggcttca
     1681 gacggcattc atgcagatat gtctcatgtg gttaacggtg cggacgtttc tgaccacgcg
     1741 actgttttgc cgccatttga ttgatttcct gacgtgtcgg gcgttttttg aacatagcgt
     1801 gcgcctcgtc caccgaacat ttttgcgaca ggcagatcag ggtaatcgca tctttctggt
     1861 gttgtccgcc gctgtggtac atacggcgca ggtttgcctc gttgattctg cctttttcgg
     1921 gatcgatgtc gaattttttc aggcgttcga taaactggcg ttgctgtcgg cgggatgtcc
     1981 aaacaaaacc gcccgcagcg gcagcgacaa tgatggcggc aagcaggatg gcaagcggcc
     2041 aggaatcgac aatcaatacg ataatgaggc ttaaaacggc ggtggtcagt aaaatcaggc
     2101 cgcccaagcg cagtttggtc ttattgtcca tagggttaat gttcctttat tgaggtggtc
     2161 gtgccgtctg aaatgttttc ggacggattg gtgaatactt ttcaggatta acggtatttt
     2221 acagtatttt cggattttgg ggattaccgc tttattccgc cagcgacacg acaagccgtt
     2281 taaataccgt ccatgcgtcg ccgtcttccg cacctttgat gattcggtcg atttgggcgc
     2341 aggttttgag cgcgtcaagc aggcggacga cggaaatccg tctgaccgca atcggagcga
     2401 gcgtctgctt ttcaccccaa agcctgaggc tgttgcggac ggattggatg ctctgcccct
     2461 gcttcagggc ggcggcaagc cggatcagcg tccgcacgtc ttcggcaacc gcccacagca
     2521 acagcaccgg ttcttcgcct tcctcctgca atccgtccaa caatctgcat acgcgcggga
     2581 catcgccctt catccacgcg cctgccagtt ggaacgcgtc aaagcgggcg acgttggcaa
     2641 cggcggtttg cgcctgatcg atattgacgg tatgcccttt cggatacagc agcccgagct
     2701 tgttgatttc ctgacgcgcc gccaacaaat tgccttccac gcgctcggca aacagtgcca
     2761 atgcgtctgc ctcgataccc aaaccgattt tgtccagccg tccgcgtatc cattggggca
     2821 aagccgccgc gccgaccggt ttggcttccc acacttcccc ctttgccgcc aatgcggcaa
     2881 accatttgga ctggagctgg gttttctcca gtttgggcag caaaaccagc gttaccgtat
     2941 cttccggcag gcgggcggca aaatcctgca acgcctcgcc gccggttttg ccgggttttc
     3001 cgttggggat atgcagttcc aacagcttca aatcggcaaa cagacccgca ctgcctgcgg
     3061 tttgcaacag ttcgttccaa tcgaaggcat tgtctgccgt ataaacttcc cgattaaggt
     3121 aaccttgttt cttcgccgcc gccctcaatg cgtccaatgc ctcgatacgc aacagttctt
     3181 cctcgccgtg gatgacgtac agaggtttca aaggcgcgtc cgtatcaatg cgtccgatat
     3241 gtgccgccac gtcattccgc cttcagaaag gtcaggcggc ggacaatctg ttcggcggca
     3301 tcctgccgca tttccgccca caatgccgct tcctcttcct gtttgcccaa gatctcgttg
     3361 tcggcataag caaggacgcg gcggacggac acggtcatcg gtttgccgac cggctcgccg
     3421 cgtttcaata cctgcgcttc aaccgtcaat atcaaaagat attcgttgat gactgccgca
     3481 cgggtaacgg tgtaggtttc cttgttttgg gaaacgctgt ctatacgcag ggtcatctgc
     3541 gcgccggcag catcgtccac cctgcccgaa gcctgataca gcgcggtttc caaaggaaac
     3601 tgcaatgcct gtccgccttc gatgtgccag ctccggtagg tcagcggcgg agaaatgccg
     3661 tctgcacctt tcaggtggaa accgcacgcg cccagcatca gcactgcggc agtaagaaac
     3721 agtttgttca tggcttgcct ttctcaaaag cacaaagtcg gtagattata tcagcggcgt
     3781 gttcagacgg cattgccgtc cagccaaatc aggctcgcca tacgccctgt cgctccgtcg
     3841 cggcggtagg aaaagaaagt gtcccgttcc aaaaccgtac aatgcgtgcc gccatatacg
     3901 ccgcccacgc cttcacgctt cagaatcagg cgggcgagcg cgtaaaggtc ggcaaggaat
     3961 ttgccgccgc ctatgccttc aaatgcggcg gcggcttcgg gcatgggcgt gcagaacgca
     4021 tcaaacacat cctgtccgac ttcaaacgca tccgcactga tggcagggcc gagatacgcc
     4081 atcatttcga cgggcggaac cttcatcgcg gcaatggtgt tttgcaatac gccgcccgcc
     4141 aaaccgcgcc agcccgcgtg tgcggcggca accgtcgtac ccgccctgtc gcaaaacaaa
     4201 acaggcaggc agtctgcggt catcacggca caggcaacct tgcccgtgtc gtccacggaa
     4261 gcgtccgcat cgggcgtgcc gtccaatgct tcggcagcat tgacgacaat ggtgctgtgg
     4321 atttgattga ggtaggcaac gggcaatccg acctgctgtt gcacgatttc gcggttgcgg
     4381 agcacggctt cgggattgtc gccgacgtgc gtaccgaggt tcaaactctg atacgcacct
     4441 tggctcacgc cgccgttgcg cgtggtaatc agggttttca cattggcggg cgcgggccaa
     4501 tcggcggtca ggaagttttt gcctttcggg gcaagattta gggtttctgt gatggttttc
     4561 attggatatt ggaataggtg tgtggcggaa aaggttgatt aactgccttc ggggcaaatg
     4621 gatgcttgtt ttttcgtcat tcccgcacag gcgggaattc ggagattcgg gattgttttc
     4681 aaacgttcgg gtttggattc ttgccggtgc aggaatgatg cccttatata ctttctccga
     4741 gctttatatg tttcaacagg ggatggcaca tcaagcaccg cactgcgtgt tgcccgaacg
     4801 agactaccct ccgattagat tctatcgcta taaacagatg ggtttcaacc gaaaaggaat
     4861 ggggataaag tccatttccg acatctctcg ggcgatgccg tctgaaaacc aatctccact
     4921 ttcagacggc attgtttagg cgcggtcatt ttgcaaatta aggttaaggc gtgtatgctt
     4981 gccttccctt aaaaacaaac acgcaacgca ttattatgaa tatcctcagt aaaatcagca
     5041 gctttatcgg aaaaacattt tccctctggg ccgcgctctt tgccgccgcc gcttttttcg
     5101 cgcccgacac tttcaaatgg gcggggcctt atattccttg gctgttgggc attattatgt
     5161 tcggtatggg tttgacgctc aaaccttccg acttcgatat tttgttcaaa catcccaaag
     5221 ccgtcatcat cggcgtaatc gcacaattcg ccattatgcc ggcaaccgcc tggctgctgt
     5281 ccaaactgtt gaacctgcct gccgaaatcg cggtcggcgt gattttggtc ggctgctgcc
     5341 cgggcggtac ggcttccaat gtgatggcct atctggcgcg cggcaatgtg gctttgtcgg
     5401 ttgccgttac gtctgtttcc accctgattt ccccattgct gactcccgcc atcttcctga
     5461 tgcttgccgg cgaaatgctg gaaatccaag cggccggtat gttgatgtcc atcgtcaaaa
     5521 tggttttgct ccccattgtt ttgggtttga ttgtccataa ggttttgggc agtaaaaccg
     5581 aaaagctgac cgatgcgctg ccgctggttt ccgttgccgc catcgtgctg attatcggcg
     5641 cggttgttgg ggcaagcaaa ggcaagatta tggaaagcgg cctgctgatt tttgcggttg
     5701 tcgtactcca caacggcatc ggctacctgc tcggcttctt tgccgccaaa tggaccggcc
     5761 tgccttatga tgcacaaaaa acgctgacca tcgaagtcgg tatgcaaaac tcgggcctgg
     5821 ccgccgcgct tgccgccgca cactttgccg ccgcgccggt cgttgccgtt ccgggcgcat
     5881 tgttcagcgt gtggcacaat atctccggct cgctgctggc aacttattgg gcagccaaag
     5941 ccggtaaaca taaaaaaccc taaacgcctt tcatcataat gccgtctgaa cggggcaaac
     6001 aaaaccggcg gtttctgccc ggccccttca gacggccttt gtttgaaatc ggcggggacg
     6061 attgcccggc tgctccgatt cggctgcctg cgttcgcccc gcctttcaag ccgcctcact
     6121 cccttacata aaccacttcg acatcatagt cgtcttcgtt ccaatcatcg tcgtcgtccg
     6181 cgccgaattt gtcctgccat tcttcttcat tgctcaaaga cgaatccaaa ccggcttcaa
     6241 gacggaggac agacaacaaa tgatatatgt cgtccggaat cggtgcctca aacgaaacgg
     6301 tttcgccgct ttccggatgg gtaaaactca agcggtaggc gtgcaacgcc tgacgcgcac
     6361 ccaaactttt aacggcttct ttcaccgtgt cgccgcacgg atggcgcggg ttgccgtaaa
     6421 ccgggtcggc ggcaagcgga tggttggcct cgcgcatatg gacgcggatt tggtgcgtcc
     6481 tgcccgtttc gagcgagcat tcgatatagc tgtgggtaag atagcgttcc aacactttga
     6541 cgtgggtaac ggcaggcttg ccgccgaatt tgacgactgc cattttcagg cggttgtgcg
     6601 gatcgcgtcc gatttgggtt tcgattttac cgtcaaaggg gacgatgccg ttggcgacgg
     6661 cgcggtagat acgtttgacc gtgcgttctt gaagctgcct cacgagggaa ttttgcgccg
     6721 acagggtttt ggcaaccacc atcagcccgc tggtttcctt gtccaaacgg tgtacgatgc
     6781 ctgcacgagg tacttggctc aattcgggac agtgcgccaa gaggccgttg agcagcgtcc
     6841 ccgtccagtt gcccgccgcc ggatgcacca ccagtccggc cggtttgttg acgacgatga
     6901 cggtatcgtc ttcgtaaata atatccaaag ccataggctc tggaacaaac gccagatttt
     6961 cctcactcgg acggacggtt acacaaattt gctcgccgcc tatcattttg tctttgggtt
     7021 gcgaaggttt atcgtttaca ataaccgcgc cttctttaat ccatgatgtc aggcggctgc
     7081 gcgagtagtc gggcagaagt ttcgccaaca ccgcatccaa ccgcccgccg gcaagctcga
     7141 gcggaacggt cagaccgata cggttttcag tttcggaagc tgacgcaaag tctgaatcgt
     7201 cgctataatc ggattcatta tcaaaggaag tattctgcat gaaaaaaatt cttttaacgg
     7261 tttcattagg tttggcactg agtgcctgtg ccactcaagg tacggtcgat aaagatgctc
     7321 agattaccca agattggagt gtggagaagc tctatgccga agcccaggac gaattgaaca
     7381 gcagcaatta tacgcgggct gtcaagttat acgaaatctt ggaatcgcgc ttccccacca
     7441 gccgccatgc ccggcaatcc caactggata ccgcatacgc ctattataaa gacgatgaaa
     7501 aagacaaggc tctggcggca atcgaacgct tccgccgcct ccatccgcag catccgaata
     7561 tggattacgc gctgtatctg cgcggcttgg tgctgttcaa cgaagaccag tccttcttga
     7621 acaaactggc ctcgcaagac tggtccgacc gcgacccgaa agccaaccgc gaagcgtatc
     7681 aggcctttgc ggaactcgtc caacgcttcc cgaacagcaa atacgccgcc gatgcaaccg
     7741 cacgcatggt caaactggtc gatgcactgg gcggcaatga aatgtcggtg gcgcgctact
     7801 acatgaaacg cggtgcatac atcgccgccg ccaaccgcgc ccaaaaaatc atcggcagct
     7861 atcaaaatac acgctatgtc gaagaatcgc tcgccatatt ggaacttgcc taccaaaaac
     7921 tcggcaaacc acagcttgcc gccgatacgc gccgcgtgtt ggaaaccaac ttcccgaaaa
     7981 gcccgttttt gacgcacgct tggcagcccg acgatatgcc ctggtggcgt tactggcact
     8041 gattccgcac cgatgtcatg atgccgtctg aaaccctttc agacggcatt ttccgttccg
     8101 gcaccagcct ttccgttcac tcaaacggtt ttttctgcca atagaattta taccctctca
     8161 aacgttgggc cttcacgccg ccgcgcccca agccgaattg cagcgcgccc gacaaatcgg
     8221 tacgcagcag tttgatgccg tgtgcgcgga cacggttctg caccgcttcg gtcggatgtt
     8281 tgtaggcgtt ggcataaccg cttgaagcaa cggcatattc gggcgagacg gcattgagga
     8341 acacgcccga cgaggacgta ttgctgccgt gatgtcccaa aaccaaaacc tggctgtaca
     8401 ggttgcctcc atacttgccg accaggcttt cctcgccctt cgtatccaaa tcgcccgtta
     8461 ccagcagtgc cgcaccgccc gccacaacac gcaaaacaca acttttccca ttatcatcga
     8521 tgtttttgcg ttcagacggc atcaaaaact caaaatccac gccgtcccat tgccaacgct
     8581 gttccgcaca atgccgcgcc ccctcataaa attccggctg tccggcataa atcccgctgt
     8641 tcggtatctt gccgactgcc tgaaaaccgc cgtcgtggtc gctgtcgtga tgcgacagaa
     8701 ccagcttgtc caaacggcgg acacccgccg cattcaaact cggcacaatc cccatctgcg
     8761 ccgccgctgc cgttccggtg tcaaacaaaa gatgatgatt tgccgtctga accgacaccg
     8821 acaaaccctg ccccgcatcc caaaccgtaa ccgcaacctc attttccggc acgccgggtg
     8881 aacggtaaaa cacaaaccct gccaacagca acaccgccca cggacgcaaa cccaagccgc
     8941 gcggcagcag caacagcaaa gcggcacaca ccgccaacac caacagcggc aaaggtgcgg
     9001 aggcaacggc aaactcgggc gacacatcgg caagccacac caaaaaccgc aaagtatatt
     9061 ccgccaaaaa tgcccccaac tgttgcaaag gcgcaaacgg cacgaccgaa cccagcaacg
     9121 ccagcggcgt caatacccaa gaaaaccacg gaatcgccac cgcattgacc aaagggctga
     9181 ttaaaggcag cgaagcaaac agataaccga gcaaaaccag cgacaacacc gaagccgccc
     9241 actgcccgcg cacggcggtt tgccgtttcc cttcgtgcaa acgccccgaa cacgcccata
     9301 tcagggccgc caccaaaccg aaagacagcc aagtccccac acccaagacc gccaaagggt
     9361 cgaacagcag cactgccgcc aacgcctgcc accacgtcgc ccacgccgac aatcttcccc
     9421 tgcgccaagc ccacgcaaac gccgccaaca tcaaaacgct gcgctgcgtc ggcacggaaa
     9481 aaccggcaag cagcgcgtaa aacagcgcgc ctgcacaccc cgccgccaaa acccacacgc
     9541 gcggccgggc aggaaggcgc ggggaacagg caagcagccg cttcgccagc cacgcaaaca
     9601 tcaccgccac catcgtaacg tgcaaacccg aaatactgac caaatgcgtc agccccaacg
     9661 gtcggaacgc ctgccacaat tcggggcgca atgccgactg ttcgcccacg ctcaacgcgc
     9721 gcatcagccc gatgccgtct gaaagcccgc cgtccgcatc cgcctgctgc caattacggc
     9781 tgatgcggct gcgccaaacc gcaatccccc aaccgcttcc gccatgcagc aaaaccctgt
     9841 ccgcaccgac cgtccccgcg ccgcctatcc cgttggataa tgcccacgcc tcacggttca
     9901 aaccgcgcag gttcaattcg ccgacgacgg ggtgcacacg tgccgttatc cgccatctgc
     9961 tcccgaccgc ccattcgcgc cgtttgtagt ccgacagcag caaatcaaac gtccgaccac
    10021 cgctgtccac agcctttgcc gcaaactgca cgcgccgccc gtccgacctc ggcatatccg
    10081 ccacttccac cgtcaacggc acacctgaaa cggcttctgc ccaccattgg gaagacaatg
    10141 ccgcctccgt cctgaatacg ccgtaagccg cgcccgccaa cacgcacagc atcagaccgg
    10201 caaacgcaaa acgccttgca aacacagcaa aaaccgcaaa agccgccagc caaaacagcc
    10261 aatgcggcac gaccggcagc gcgaacgaag ccgccgcacc gacaacccaa cacggcaaaa
    10321 accaacgacg gaacacgtct ccccacccca gatatttcaa aaataaacgg ataataaagc
    10381 aaatccgaaa aaccgtcata acaagatttg aaaatgatat agtggtttaa ca
//
LOCUS       DAXHPV010000057        10431 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.057, whole genome shotgun sequence.
ACCESSION   DAXHPV010000057 DAXHPV010000000
VERSION     DAXHPV010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10431)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10431)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10431
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.057"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(4..1005)
                     /locus_tag="ACFM6C_001066"
     CDS             complement(4..1005)
                     /locus_tag="ACFM6C_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase"
                     /protein_id="HFC6158535.1"
                     /translation="MIDGQTTEPKQKTRIILAPMQGLVDDVMRDLLTRIGGYDECVSE
                     FVRITHTVHSRSIWLKYVPEIANGNKTFSGTPCTVQLLGSDADNMAANALEAVRFGAN
                     KIDLNFGCPAPTVNKHKGGAILLKEPELIFHIVKTLRGRLPAHIPLTAKMRLGYEDKS
                     RALECACAIAEGGACGLTVHARTKAEGYEPPAHWEWIRKIRDSVNIPVTANGDVFSLQ
                     DYIGIKTISGCNSVMLGRGAVIRPDLARQIKQYENGGPVKDTDFAEVSKWIRQFFELC
                     LTKEANNKYPLARLKQWLGMMKKEFAAAQNLFDRVRTVKDADEVRNILAEFEREMNT"
     gene            complement(1082..4915)
                     /locus_tag="ACFM6C_001067"
     CDS             complement(1082..4915)
                     /locus_tag="ACFM6C_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3683 domain-containing protein"
                     /protein_id="HFC6158536.1"
                     /translation="MTTTTAPQRIREIPYNYTSYTDREIVIRLLGDEAWQILQDLRGQ
                     RKTGRSARMLFEVLGDIWVVVRNPYLVDDLLEHPKRRAALVREMRHRLNEIRKRRDDN
                     RQVDVLVAAAEKAVGRFDSSFDETSQKRRQILERLSKITKPHNIMFDGLARVTHVTDA
                     TDWRVEYPFVVVNPDTEAEIAPLVRALIELDLVIIPRGGGTGYTGGAIPLDAMSAVIN
                     TEKLDKHRGVEFVELAGLDGKHPIIRCGAGVVTRRVEETAHQAGLVFAVDPTSADASC
                     VGGNVAMNAGGKKAVLWGTALDNLAYWQMVNPQGEWLRIERVRHNFGKIHDEETAVFD
                     VHTLDSDGINIVKTERLEIPGHKFRKVGLGKDVTDKFLSGLPGVQKEGTDGIITGVAF
                     VLHKMPKYTRTVCMEFFGTVATATPSIVEIRDFLLAHDSVRLAGLEHLDWRYVRAVGY
                     ATKAAGKGRPKMVLLADVVSDDEAAVEAAAEHICELARARDGEGFIAVSPEARKTFWL
                     DRSRTAAIAKHTNAFKINEDVVIPLERLGEYSDGIERINIELSIQNKLKLCAALEQYL
                     SGKLPIDKMGTDLPTAELLGERGKHALAHVSAVKTRWEWLLANLDTPLADYKARYGAA
                     VHAAPEAKNNESCFIAFRDFRLRVSVKADVMKPLSEIFSGKTDTKIIQGLGKIHAKTV
                     RSRVFVALHMHAGDGNVHTNIPVNSDDAEMLQTAYRSVERIMKIARSLNGVISGEHGI
                     GITKLEFLSDEEMQPFWDYKNQVDPKHTFNRHKLMKGSDLSNAYTPSFELLGAESLIM
                     EKSDLGTIADSVKDCLRCGKCKPVCSTHVPRANLLYSPRNKILGVGLLTEAFLYEEQT
                     RRGVSIKHFEELMDIGDHCTVCHRCVKPCPVNIDFGDVTVAVRNYLADSGHKRFAPAA
                     AMGMAFLNATGPKTIKALRAAMIQIGFPAQNFAYKIGKLLPIGTKKQKAEPKATVGKA
                     PIKEQVIHFINRPLPKNVPAKTPRSLLGIEDGKSIPIIRNPASPEDAEAVFYFPGCGS
                     ERLFSQIGLAVQAMLWHVGVQTVLPPGYMCCGYPQDAGGNKAKAEEMSTNNRVAFHRM
                     ANTLNYLDIKTVVVSCGTCYDQLEKYRFEEIFPGCRIIDIHEYLLEKGVKLDGVKGQQ
                     YLYHDPCHTPIKTMNATQMASNLMGQKVVLSDRCCGESGMFAVKRPDIATQVKFRKQE
                     EIEKNLKELPQGEPVKMLTSCPACLQGLSRYADDNNMPADYIVIEMAKHILGENWLDE
                     FVKKANNGGVEKVLL"
     gene            5176..5272
                     /gene="ffs"
                     /locus_tag="ACFM6C_001068"
     ncRNA           5176..5272
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="ACFM6C_001068"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            5439..7130
                     /gene="dld"
                     /locus_tag="ACFM6C_001069"
     CDS             5439..7130
                     /gene="dld"
                     /locus_tag="ACFM6C_001069"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016901 - oxidoreductase activity, acting
                     on the CH-OH group of donors, quinone or similar compound
                     as acceptor [Evidence IEA];
                     GO_process: GO:0006089 - lactate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0019516 - lactate oxidation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HFC6158537.1"
                     /translation="MSASQLLSRLTQTVGEKYIITEPAKTEQYRQGYRFGEGKALAVV
                     RPGSILEMWKILQACVEADVIVITQAANTGLTGGSTPDGNDYDRDIVIVNTMRMNIIQ
                     TINDNEQVVCLPGSTLNQLELLLKPLGREPHSVIGSSCIGASVLGGVCNNSGGALVQR
                     GPAYTEMALFAQINEEGRLELVNHLGIDLGDTPEEILTNLQGHHYQNKDIKQDAGKGH
                     DHAYCEHVRQVDEPTAARFNADPARHYEASGCAGKLMVFAVRLDTFPQEKQTAVFYIG
                     TNDINELTDIRRAALGEFESLPVSGEYIHRHAFDIADVYGKDTFYVIKKFGTHQLPKL
                     FDLKARVDRFGKKASFLPKHFSDKAMQFVSKYLPDHLPKSMRDYRDKYEHHLILKMGG
                     KGVDEARAFLKEYFAHHSGAFFECNAEETQAAMLHRFAVASAAIRYRAVHDDEVEDLV
                     ALDIALRRDDRDWFEKLPSEIDNKIIHKLYYGHFMCHVFHQDYIIKKGNDCMALEHEM
                     LHLLDQRGAQYPAEHNVGHLYEAKPALKQFYRKLDPTNSFNPGVGKTSKKKNWAE"
     gene            7262..7369
                     /locus_tag="ACFM6C_001070"
                     /pseudo
     CDS             7262..7369
                     /locus_tag="ACFM6C_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            7425..7796
                     /locus_tag="ACFM6C_001071"
     CDS             7425..7796
                     /locus_tag="ACFM6C_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2628 domain-containing protein"
                     /protein_id="HFC6158538.1"
                     /translation="MKPYKIYTHPALPPQAVKQGWSWPGLLFGTLWACFKRMWGLGLG
                     LTGAIFVLAVFAQLVYGDTPATDSAFNVLGLAVSVWFGAKGNSLYARHLLSRGYTELP
                     ETVEAANPQAALAQYFGRGGR"
     gene            7951..8499
                     /locus_tag="ACFM6C_001072"
     CDS             7951..8499
                     /locus_tag="ACFM6C_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HFC6158539.1"
                     /translation="MARLTVHTLETAPEAAKARVEAVLQNNGFIPNLIGVLSNAPEAL
                     AFYQEVGKLNAANSLTAGEVEVIQIIAARTNQCGFCVAGHTKLATLKKLLSEQSVKAA
                     RALAAGEFDDAKLGALAAFTQAVMAKKGAVSDDELKAFFDAGYNQQQAVEVVMGVALA
                     TLCNYVNNLAQTEINPELQAYA"
     gene            8633..9724
                     /locus_tag="ACFM6C_001073"
     CDS             8633..9724
                     /locus_tag="ACFM6C_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HFC6158540.1"
                     /translation="MNAQTLIANVAELVKTKLKPIVDDIDRKGYYPEAFMRELGAIGG
                     FGAVGTEAEGGNGLGLATQIAVLREIGKECGATSFSAWCQAACAWYLHQTPNQAVKDK
                     YLADILQGRVLAGTGMSNTVKHLAGIEKHNLQAERADGGYTVNGALPWVSNIGEDHIW
                     ANTAQIGGGYVMFITGGQWEGVSLQNCPEFCALEGTRTFSLNFKDVFIPDEDIIAAPE
                     QFADYIQSIKAGFILLQIGIGAGVIDGSLGIIRLANIVNAEVNRYLDDGYDSLKARLD
                     GAWAETERLAGLAWNNTPDTLATLKLREAAAVLALAAAQSAALHSGAKGYLMRSPAQR
                     RVREAMFVAIVTPAIKHLRKEIAAIEAAK"
     gene            10196..10366
                     /locus_tag="ACFM6C_001074"
     CDS             10196..10366
                     /locus_tag="ACFM6C_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003744701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rubredoxin"
                     /protein_id="HFC6158541.1"
                     /translation="MAQYMCGPCGWIYDEELGDPEHGIPPGTKFEDIPDDWKCPECGV
                     GKEDFYLLDFVI"
BASE COUNT         2433 a         2912 c         2800 g         2286 t
ORIGIN      
        1 tattcaagta ttcatttctc gctcaaattc agccaagatg ttccgaactt cgtccgcatc
       61 cttaaccgtt cggacgcggt cgaacagatt ttgtgctgct gcaaattctt tcttcatcat
      121 acccagccac tgtttcagcc gcgccagcgg atatttgttg tttgcctctt ttgtcaggca
      181 cagctcgaaa aactgccgta tccatttgga aacttcggca aaatccgtgt ctttgaccgg
      241 cccgccgttc tcgtattgct tgatttgccg cgccaaatcg gggcggatga ccgcgccgcg
      301 accgagcatc acgctgttgc agccgctgat tgttttgatg ccgatatagt cttgcaggct
      361 gaaaacgtcg ccgttggcgg taacgggaat attgacgctg tctcggattt tccttatcca
      421 ttcccaatgc gccggcggtt cgtaaccctc ggctttggta cgcgcgtgta cggtcagtcc
      481 gcatgcgccc ccttcggcaa tcgcacaggc gcattccaaa gcccggcttt tgtcttcgta
      541 accgagccgc atttttgcgg tgagcggaat atgtgcgggc aaacgtccgc gcagcgtttt
      601 gacgatgtgg aatatcagtt ccggctcttt taaaaggatt gcgccgcctt tgtgtttgtt
      661 gacggtgggc gcggggcagc cgaagttcaa atcgattttg ttcgcaccga agcggacggc
      721 ttccagcgca ttcgccgcca tattgtccgc atcgctgccc aaaagttgga cggtgcaggg
      781 cgtgccggaa aacgttttgt ttccgttggc gatttcgggg acatatttta accatatgga
      841 tcgggaatgc acggtatggg taatgcgtac aaattcgctg acgcattcgt cgtagccgcc
      901 aatacgcgtc agcaggtcgc gcatcacgtc atcgaccaga ccctgcatag gggcaaggat
      961 gattcgggtt ttttgtttgg gttcggttgt ttgtccgtca atcatgattc gggtaggtat
     1021 ttgattcaaa caatgccgtc tgaaggcttt cggcgttcag acggcatttc cgtgtccgtt
     1081 gttacagcaa tactttttcc acgccgccgt tgttggcttt tttcacaaac tcgtccagcc
     1141 agttttcgcc gaggatgtgt ttcgccattt cgataacgat gtagtcggca ggcatattgt
     1201 tgtcgtcggc gtagcggctc aaaccttgca ggcaggcggg gcaggaggtc agcattttga
     1261 cgggttcacc ctgcggcagc tctttgaggt ttttctcgat ttcctcttgt ttgcggaatt
     1321 tgacttgggt ggcgatatcg gggcgtttga cggcaaacat accggattcg ccgcagcagc
     1381 ggtcgcttaa aacgactttc tgccccatca ggttgcttgc catttgggtg gcgttcatgg
     1441 ttttgatggg tgtgtggcag gggtcgtggt agaggtattg ctgacctttc acgccgtcga
     1501 gtttcacgcc tttttcgagc aggtattcgt ggatgtcgat gatgcggcag ccagggaaga
     1561 tttcctcgaa gcggtatttt tcgagctggt cataacaagt gccgcaactg acgacgacgg
     1621 ttttgatgtc gaggtagttg agggtgttcg ccatacggtg gaaagccacg cggttgttgg
     1681 tgctcatttc ttcggctttt gccttattgc cgcccgcgtc ttgcggatag ccgcaacaca
     1741 tatagccggg cggcagaacg gtttgtacgc cgacgtgcca gagcatagct tggacggcaa
     1801 gcccgatttg gctgaacagg cgttccgaac cgcagccggg gaagtagaac acggcttcgg
     1861 catcttccgg agaagccgga ttacggatga tggggatgct tttgccgtct tcgatgccca
     1921 ataaggagcg cggtgttttg gcgggtacgt ttttgggcag ggggcggttg atgaaatgga
     1981 taacctgttc tttaatcggg gctttgccga cggttgcctt gggttcggct ttttgctttt
     2041 tcgtgccgat tggaagaagt ttgccgattt tgtaggcgaa attctgcgct gggaagccga
     2101 tctgtatcat ggcggcgcga agggctttga tggttttcgg gccggtggcg ttcaaaaacg
     2161 ccatacccat agctgcggca ggcgcaaatc gtttgtggcc ggaatcggca agatagttgc
     2221 ggacggctac ggtaacgtcg ccgaagtcga tgttgacggg gcagggtttg acgcagcggt
     2281 ggcacacggt gcagtggtcg ccgatgtcca tgagttcttc aaagtgtttg atggaaacgc
     2341 cgcggcgggt ttgttcttcg tataagaagg cttcggtcaa taagcccacg ccgaggattt
     2401 tgttgcgcgg actgtacagc aggttggcac gcggaacgtg agtagagcag acgggtttgc
     2461 atttgccgca gcgcaggcag tctttgacgg aatcggcgat ggtaccgagg tctgattttt
     2521 ccataatcaa cgattccgca cctaaaagct cgaaggatgg cgtataggcg ttgcttaagt
     2581 ccgagccttt catcagtttg tgacggttga aggtgtgttt cggatcgact tggtttttgt
     2641 agtcccaaaa cggctgcatt tcttcgtcgc ttaaaaattc gagcttggta atgccgatgc
     2701 cgtgttcgcc ggaaatcacg ccgttaagcg aacgggcgat tttcataatg cgttcgactg
     2761 agcggtatgc cgtctgaagc atttcggcat cgtctgagtt aaccggaata ttggtgtgaa
     2821 cgttaccgtc gccggcgtgc atatgcaggg cgacaaagac gcggctgcgt acggtttttg
     2881 cgtggatttt tcccaagcct tggataattt tggtgtcggt tttgccgctg aagatttcag
     2941 aaagcggttt cattacgtcc gctttgacag acacgcgcag gcggaaatcg cggaaggcaa
     3001 taaagcagct ttcattgttt ttggcttcgg gtgcggcgtg gacggctgcg ccgtagcggg
     3061 ctttgtagtc ggcaagcggc gtgtcaagat tggcgagcag ccattcccaa cgcgttttga
     3121 cggcggaaac gtgggccagg gcgtgtttgc cgcgttcgcc caatagttcg gcggtcggca
     3181 ggtcggttcc cattttgtcg atggggagtt tgccggacag atattgctcc aaggcggcac
     3241 agagtttgag tttgttttga atggaaagct caatgttgat gcgttcgatg ccgtctgaat
     3301 actcaccgag cctttcgagt gggatgacca cgtcttcgtt gattttaaag gcgttggtat
     3361 gtttggcgat ggcggcggtg cggctgcggt cgagccagaa ggttttgcgc gcttcgggcg
     3421 atacggcgat aaagccttcg ccgtcgcggg cgcgggcaag ttcacagatg tgctcggcgg
     3481 cggcctctac ggcggcttcg tcgtctgaaa ccacgtccgc cagtaagacc attttcggcc
     3541 gccccttacc cgctgctttg gtggcgtagc cgacggcgcg gacgtaacgc cagtccaaat
     3601 gttccaaacc cgccagccgc acgctgtcgt gggcgagcag gaaatcgcgg atttcgacga
     3661 tagaaggcgt agcggtggca accgtgccga aaaactccat acacacggtg cgcgtgtatt
     3721 tcggcatttt gtgcaacaca aaggcgacgc cggtgatgat gccgtctgta ccttcttttt
     3781 gcacgccggg caggccgctc aagaatttgt cggtaacgtc tttgcccaaa ccgactttgc
     3841 ggaatttgtg gccggggatt tccaagcgtt cggttttaac gatattgatg ccgtctgaat
     3901 ccagcgtgtg aacatcgaac acggcggttt cttcgtcgtg gattttgccg aaattgtggc
     3961 gcacgcgctc gatacgcagc cattcgcctt gagggttgac catctgccag taggcgaggt
     4021 tgtccaacgc cgtcccccac agcacggctt ttttgccgcc cgcgttcatc gccacattac
     4081 cgcccacgca agacgcatcg gcggaagtcg gatcgacggc gaacaccaaa cctgcctgat
     4141 gcgcggtttc ttccacccgc cgcgtaacca cgcccgcgcc gcaccggata atcggatgtt
     4201 tgccatccaa gcccgccagt tcgacaaact ccacgccgcg atgtttgtcc agcttttccg
     4261 tattgatgac cgcgctcatt gcgtccaaag gaatcgcgcc gccggtataa cccgtaccgc
     4321 cgccgcgcgg gataataacc aaatccagct cgattaaggc gcgcaccaaa ggcgcgatct
     4381 ctgcctcggt atcaggattg acgacgacaa acggatactc cacgcgccag tcggttgcat
     4441 cggtaacgtg cgttacgcga gccaagccgt caaacataat attgtgcggc ttggtgattt
     4501 tgctcaaacg ctccaaaatc tgccgccgct tttggctggt ttcatcaaaa ctgctatcaa
     4561 aacgcccgac cgccttttcc gccgccgcaa ccaagacatc gacttggcgg ttgtcgtcgc
     4621 ggcgtttgcg gatttcgttc aacctgtggc gcatttcgcg taccagcgcg gcgcggcgtt
     4681 tcggatgctc cagcaaatca tcgaccagat acggattgcg tacgaccacc caaatatcgc
     4741 ccaatacttc aaacagcatc cgtgccgaac gcccggtttt acgctgtccg cgcaggtctt
     4801 gcaggatttg ccacgcttcg tcgcccaata atcggatgac gatttcgcgg tcggtataag
     4861 aagtatagtt gtagggaatt tcccgaatac gctgaggggc ggtagtcgtg gtcatggtgt
     4921 gtccgtgttt ggcagttttt atttgaatgc cgtctgaaaa ttcggtttca ggcgagtttg
     4981 aaaaggcgat aatgtagttc aatttttgat atttttcaat gccgaaacag gaaataccct
     5041 tatagaaaca aaataacgct ttgagaaatt gttgacaata ttatcaaata taaattttag
     5101 gtggtgtttc cggcgtatga ccgtatcaaa acggttgagt ttttcagaaa acccgttata
     5161 atgccgtttc tctgaggcgg gtctccccgc atggcaaatc ggaacaccgg gtcaggggcg
     5221 gaagccagca gcccactccg atgcgccagt gccgggggtt tggcccgccg ccctatttga
     5281 aacgccggag ctttgatgtt ccggcgttcc cgtatcgcac cgatgccgtc tgaaagccgt
     5341 tcagacggca ttttctttac tttgccataa cgtataacta caatgtgaaa acaattccaa
     5401 tgtgcaatgc acctgccgac aattttaagg aaactgccat gagcgcatca caattactgt
     5461 caagactgac ccaaaccgta ggcgaaaaat acatcatcac cgaacccgcg aaaaccgaac
     5521 aataccgcca aggctaccgc ttcggcgagg gtaaggcgtt ggcggtggtg cgccccggaa
     5581 gcattctgga aatgtggaaa attctacagg cgtgcgtcga agcggacgtg attgtgatta
     5641 cgcaggcggc gaataccggt ttgacgggcg gctcgacccc cgacggcaac gattacgacc
     5701 gcgacatcgt gatagtgaac actatgcgga tgaacatcat ccaaaccatc aacgacaacg
     5761 aacaagtcgt ctgcctgccc ggctcgaccc tgaaccagct tgaattgctg ctgaaacctt
     5821 tgggacgcga accgcattcg gtcatcggct catcctgcat cggcgcgtcc gttttaggcg
     5881 gcgtgtgcaa caactccggc ggcgcgttgg tacagcgcgg cccggcctac accgaaatgg
     5941 cactgttcgc ccaaatcaac gaagaaggca ggttggaact ggtcaaccac ttgggcatag
     6001 acttgggcga cacgcccgaa gaaatcctga ccaacctgca aggtcatcat tatcaaaaca
     6061 aagacatcaa acaagacgcg ggcaaagggc acgaccacgc ctattgcgaa cacgtccgcc
     6121 aagtggacga accgaccgcc gcgcgtttca atgccgaccc cgcccgccat tacgaagcct
     6181 cgggctgcgc gggcaaactg atggtttttg ccgtccgttt ggacaccttc ccgcaagaaa
     6241 aacaaaccgc cgtgttctac atcggcacga acgacatcaa cgagctgacc gacatccgcc
     6301 gcgccgcctt gggcgaattt gaaagcctgc ctgtttccgg cgaatacatc caccgccacg
     6361 ctttcgacat tgccgacgtg tacggcaaag acacgtttta cgtcatcaaa aaattcggta
     6421 cgcaccaact gccgaaatta tttgacttga aggcgcgcgt ggacaggttc ggcaaaaaag
     6481 ccagcttcct gcccaaacat ttttccgaca aggccatgca gttcgtcagc aaatacctgc
     6541 ccgaccacct gcccaaatcc atgcgcgatt accgcgacaa atacgaacac cacctgattc
     6601 tgaaaatggg cgggaaaggc gtggatgagg cgcgcgcgtt cttaaaagaa tattttgcac
     6661 accacagcgg cgcgtttttc gagtgcaacg ccgaagaaac ccaagccgcg atgctgcacc
     6721 gtttcgccgt cgcctccgcc gccatccgct accgcgccgt gcatgatgac gaagtggaag
     6781 acttggtcgc gctcgacatc gccctgcgcc gcgacgatcg cgactggttt gaaaaactgc
     6841 cgtcggaaat cgacaataaa atcatccata aactctacta tggacatttc atgtgccacg
     6901 ttttccatca ggattacatc atcaaaaaag gcaacgactg catggcgttg gaacacgaaa
     6961 tgctgcatct tttagaccaa cgcggcgcgc aatatcccgc cgaacacaac gtcggtcatt
     7021 tgtatgaagc caaacccgcg ctcaaacagt tttaccgcaa acttgacccg accaacagct
     7081 tcaacccggg cgtaggcaaa accagcaaaa agaaaaactg ggcggaataa gcgcgtccgc
     7141 tttgaaggca ggcaatgccg tctgaaggca aaacgccgtt cagacggcat tgtcgggttt
     7201 gaagttcccc gtcgggtaat cgctttcaaa ccgtatgccg acacacgggc gcgcccctcc
     7261 caaatatagt ggattaaatt taaatcagga caaggcaacg aagccgcaga cagtacagat
     7321 agtacggcaa ggcgaggtaa cgccgtactg gtttaaattt aatccactat aaagtctgat
     7381 cctaccttcc caaagggcag ggtttcaacc gaaaaggaaa cacgatgaaa ccatacaaaa
     7441 tctacaccca tcccgccctg ccgccccaag ccgtcaaaca aggctggtca tggccggggc
     7501 tcttgttcgg cacgctgtgg gcgtgtttca aaagaatgtg gggtttgggg ctggggctga
     7561 cgggcgcgat attcgtgctg gctgtgtttg cccaactggt ttacggcgac acgcccgcca
     7621 cagactcggc gtttaacgta ttgggcttgg cggtttccgt ctggttcggc gcaaagggca
     7681 acagccttta tgcacgccac cttttatcgc gcggctatac cgaattgccc gaaacggttg
     7741 aggcagccaa tccccaagcc gcattggcgc aatatttcgg gcgcgggggc cgataagcgc
     7801 gttttctttt ccatcatgcc gtctgaaaaa tgttcagacg gcatttctta taaccttttg
     7861 tttgcagcac ataaccaatc agtctttcct attccgttcc gaaatgcata ccatgcgccc
     7921 gtacccaata tttgcgaaca aggaaagaaa atggcacgtt taaccgtaca caccctcgaa
     7981 accgcccccg aagccgccaa agcgcgcgtc gaggcggtac ttcaaaacaa cggctttatc
     8041 cccaacctta tcggcgtatt atcaaacgcc cccgaagcct tggcgtttta ccaagaagtc
     8101 ggcaagctca acgccgccaa cagcctgacc gccggcgaag tcgaagtcat ccagatcatc
     8161 gccgcccgta ccaaccaatg cggtttttgc gtggcagggc acaccaaact cgcaaccctg
     8221 aaaaaactcc tgtccgaaca atccgtcaaa gccgcgcgcg ctttggcagc aggcgaattt
     8281 gacgatgcca aactcggcgc gctcgccgcc ttcacccaag ccgtaatggc gaaaaaaggc
     8341 gcggtatccg atgacgaact caaagcattt ttcgacgcgg gctacaacca gcagcaggca
     8401 gttgaagtcg tgatgggcgt agccttggca accctgtgca actacgtcaa caacctcgcc
     8461 caaaccgaaa tcaaccccga attgcaggct tacgcctgat acggcaaacc gcccgaatat
     8521 cgggcggttt ttcaaccccc ctcctcaaac aaaaacaagc cgccaagcgg cagggaaagc
     8581 agccgcgcat caggcgcgcc cccgattccc ccgcaaacct taaggaacaa agatgaacgc
     8641 ccaaaccctg attgccaacg ttgccgaact cgtcaaaacc aagctcaaac ccatagtgga
     8701 cgacatcgac cgcaaaggat actaccccga agcatttatg cgcgaactcg gcgcaatcgg
     8761 cggattcggc gcagtcggga cagaagccga aggcggcaac ggcttaggct tggcaacgca
     8821 aatcgccgtt ttgcgcgaaa tcggcaaaga atgcggcgca acctccttca gcgcgtggtg
     8881 tcaggcggct tgcgcgtggt atctgcacca aacgcccaac caagccgtca aagacaaata
     8941 cctcgccgac atcctgcaag gcagagtatt ggcaggtacc ggaatgtcca ataccgtcaa
     9001 acaccttgcc ggcatcgaaa aacacaacct tcaagccgag cgcgcagacg gcggctacac
     9061 agtcaacggc gcgctgccgt gggtgtccaa catcggcgaa gaccacatct gggcaaatac
     9121 cgcccaaatc ggcggcggct acgtcatgtt tatcaccggc ggacaatggg aaggcgtaag
     9181 cctgcaaaac tgccccgaat tttgcgccct cgaaggtacg cgcaccttca gcctgaactt
     9241 caaagacgta tttatccccg acgaagacat catcgccgcg cccgaacagt ttgccgacta
     9301 catccaaagc atcaaagcag gtttcatcct cctgcaaatc ggcatcggcg cgggcgtgat
     9361 tgacggcagc ctcggcatca tccgcctcgc caacatcgtc aacgccgaag tcaaccgcta
     9421 tctcgacgac ggctacgaca gcctcaaagc aaggttggac ggcgcatggg cagaaaccga
     9481 acggctcgcc ggtttggcat ggaacaacac gccggacaca ttagcgaccc tcaagctgcg
     9541 cgaagccgcc gccgtactgg cacttgccgc cgcccaatcc gccgccctgc attccggcgc
     9601 aaaaggctac ctgatgcgca gtcccgccca aaggcgcgtc cgcgaagcaa tgtttgtcgc
     9661 catcgtaacc cccgcgatca aacacctccg aaaagaaata gcggcaatcg aagccgcaaa
     9721 ataaacaggc ggaaaaaacc gaaaccccca ccgcgtcatt cccgcgaaag cgggaatcca
     9781 gcccccaacg caacaggaat ccatcggaaa aaacagaaac ccccaaaccg tcattcccgc
     9841 aaaagcggga atccagcccc ctaacgcaac aggaatccat cgaaaaaacc gaaacctcca
     9901 aaccgtcatt cccacggaag tgggaatcca gtaaccgaaa aaccacagga atctatcgaa
     9961 aaaaacccca ccccccaaaa aaaccgggcg gatacctcac catcctccca aaccctgatt
    10021 tatagcggat gaacaaaaat cagggcaagg cggcgaaacc gcagacagta caaatagtac
    10081 gaaaccgatt cacttggtgc ttgagcacct tagagaatcg ttctctttga gctaaggcga
    10141 ggcaacgccg taccggtttt tgttcatccg ctatacaaaa aacaaggaaa cacaaatggc
    10201 gcaatatatg tgcggcccct gcggctggat ttacgatgaa gaactcggcg acccagaaca
    10261 cggcatcccc cctgggacaa agtttgaaga cattcccgac gactggaaat gccccgaatg
    10321 cggcgtaggt aaagaagatt tctacctgtt ggatttcgtg atatagcggc agccgcaccc
    10381 ttagggaaaa ccccgtcatc cggcgttccg cctgcggcgg cagggaacgc c
//
LOCUS       DAXHPV010000058        10376 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.058, whole genome shotgun sequence.
ACCESSION   DAXHPV010000058 DAXHPV010000000
VERSION     DAXHPV010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10376
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.058"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            49..276
                     /locus_tag="ACFM6C_001075"
     CDS             49..276
                     /locus_tag="ACFM6C_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158542.1"
                     /translation="MNVWDIWSRMVEIYHKYKKPCLVLAVDFVMGMVFIEPNEEPCIG
                     RCYAPMSESPDFANAVAMAVAMICIVWIAVL"
     gene            complement(274..389)
                     /locus_tag="ACFM6C_001076"
                     /pseudo
     CDS             complement(274..389)
                     /locus_tag="ACFM6C_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            606..1907
                     /gene="bioA"
                     /locus_tag="ACFM6C_001077"
     CDS             606..1907
                     /gene="bioA"
                     /locus_tag="ACFM6C_001077"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004015 -
                     adenosylmethionine-8-amino-7-oxononanoate transaminase
                     activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HFC6158543.1"
                     /translation="MPSEHQHTSSLLDFDRTHLLHPYTSMTDPLPVYPVKRAEGVFIE
                     LADGTRLIDGMSSWWCAIHGYNHPVLNQAVEAQIKQMSHVMFGGLTHDPAVELGKLLV
                     GILPQGLDRIFYADSGSVSVEVALKMAVQYQQARGLTAKQNIATVRRGYHGDTWNAMS
                     VCDPETGMHHIFGSALPQRYFVDNPKSRFDDEWDEADLQPVRALFEVHHADIAAFILE
                     PVVQGAGGMYFYHPQYLRGLRDLCDEFDIVLIFDEIATGFGRTGKMFACEHAEVVPDI
                     MCIGKGLSGGYMTLAAAITSQKVTETISRGEAGVFMHGPTFMANPLACAVACASVKLL
                     LSQDWQANIRRIESILKGRLKAAWDIRGVKDVRVLGAIGVIELEKGVDMARFQADCVA
                     QGIWVRPFGRLVYLMPPYIISDGVLTKLADKTVQILKEHSK"
     gene            1904..2551
                     /gene="bioD"
                     /locus_tag="ACFM6C_001078"
     CDS             1904..2551
                     /gene="bioD"
                     /locus_tag="ACFM6C_001078"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004141 - dethiobiotin synthase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HFC6158544.1"
                     /translation="MKGVYFVSGIDTDIGKTVATGVLAKQLLQQGKSVITQKPVQTGC
                     QNIADDIAVHRKIMGKPMQEADKQGLTMPEIFSYPASPHLAARLDGRALDLDKIRTAT
                     QELAAQYEVVLVEGAGGLMVPLTEDLLTIDYIQQQDYPVILVTSGRLGSINHTLLSFA
                     ALKQYGIRLHSLIFNHIHDSSDECVAQDSLNYLQCRLKDSFPEAEWLELDKTDAV"
     gene            2566..3042
                     /locus_tag="ACFM6C_001079"
     CDS             2566..3042
                     /locus_tag="ACFM6C_001079"
                     /EC_number="4.1.3.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008813 - chorismate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HFC6158545.1"
                     /translation="MEHLFGKWLPDLPADVSDGISLPMVRLLHTRSLTAALRPLPHTF
                     SVELLKLGELETECGGRLVREVLLKLDRIPVVAARSECRIGSAFWQNILDCGTRPLGE
                     RLFQADLEGARSAFEFAVAGEGCGRYFAARRSRFSRHGEEMLLTEYFLPELKRFIG"
     gene            3072..3962
                     /gene="ubiA"
                     /locus_tag="ACFM6C_001080"
     CDS             3072..3962
                     /gene="ubiA"
                     /locus_tag="ACFM6C_001080"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008412 - 4-hydroxybenzoate
                     octaprenyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HFC6158546.1"
                     /translation="MNPKSPLFLRLSDRLDVYLRLMRADKPIGTLLLLWPTYWALWLA
                     SDGIPDLAVLAAFTIGTFLMRSAGCVINDFADRDFDGAVERTKNRPFAQGRVGKKEAL
                     LLTAFLCLLAALCLIPLNHLTWLMSLPALFLALTYPFTKRFFPIPQLYLGLAFSFGIP
                     MAFAAVGNSVPVEAWILFTANVLWTLAYDTVYAMADKEDDLKIGIKTSAVTFGRYDIA
                     AVMLCHGGFTLLMAVLGAVIGAAWAYWTAIPIVLLLQYRQYAAIKSRVRQICFETFLA
                     NNRIGWVWFTAIFAHTFFAK"
     gene            4147..4596
                     /gene="ptsN"
                     /locus_tag="ACFM6C_001081"
     CDS             4147..4596
                     /gene="ptsN"
                     /locus_tag="ACFM6C_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008982 -
                     protein-N(PI)-phosphohistidine-sugar phosphotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS IIA-like nitrogen regulatory protein PtsN"
                     /protein_id="HFC6158547.1"
                     /translation="MSLIGEILPLSHIVLDMEVGSKKRLFEEAGLLLERESSLSHADV
                     FECLFAREKLGSTGLGQGVAIPHGRHAGVKQATGAFIRTREPVGFDAPDGKPVSLVFI
                     LLVPENATGEHLEVLSKLAGKFSQKSIRESLMTVSSAEEARAILTEE"
     gene            4600..5562
                     /gene="hprK"
                     /locus_tag="ACFM6C_001082"
     CDS             4600..5562
                     /gene="hprK"
                     /locus_tag="ACFM6C_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006109 - regulation of carbohydrate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr(Ser) kinase/phosphatase"
                     /protein_id="HFC6158548.1"
                     /translation="MPSISVRRLFDDNQYKLQLAWAAGNSGADNRIGVEADKPVLALV
                     GHLNFIHPNQIQVVGLAESEYLNRLESGETGYQFGDLFDISMSLVIVANGLPVSPGLR
                     DYCHKNDIPLLTSKLESPYLMDVLRIYLQRTLAASSVKHGVFLDVFEIGVLITGHSGL
                     GKSELALELISRGHSLIADDAVELFRIGPETLEGRCSPMLRDFLEVRGLGILNIRHIF
                     GETSIRPKKILQLIINLVEADDEYMKQLDRLSIRTETESILNVNVRSVTLPVAVGRNL
                     AVLVEAAVRNYILQLRGKDSTREFLERHQTQLKENEQNHENRPD"
     gene            5543..6397
                     /gene="rapZ"
                     /locus_tag="ACFM6C_001083"
     CDS             5543..6397
                     /gene="rapZ"
                     /locus_tag="ACFM6C_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HFC6158549.1"
                     /translation="MKIVLISGLSGSGKSVALRQMEDSGYFCVDNLPLEMLPALVSYH
                     IERADETELAVSVDVRSGIDIGQAREQIAYLRGLGHRVEVLFVEAEESVLVRRFSETR
                     RGHPLSNQDMTLLESLKKEREWLFPLKEIAYCIDTSKMNAQQLRHAVRQWLKVERTGL
                     LVILESFGFKYGVPNNADFMFDMRSLPNPYYDPELRPYTGMDKPVWDYLDGQPLVQEM
                     VDDIERFVTHWLPRLEDESRSYVTVAIGCTGGQHRSVYIVEKLARRLKGRYELLIRHR
                     QAQNLPSR"
     gene            6479..7420
                     /gene="ylqF"
                     /locus_tag="ACFM6C_001084"
     CDS             6479..7420
                     /gene="ylqF"
                     /locus_tag="ACFM6C_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YlqF"
                     /protein_id="HFC6158550.1"
                     /translation="MAIQWFPGHMNKAKKAIAERAKSVDMVIGMLDARMPASSENPLL
                     AQLSKGKPKLKILNKQDLADPERTKVWLDHYNSRPDTCAIALDSSETGAHGKITQACR
                     AMIPHRQGIDKPLRVLICGIPNVGKSTLINGMIGKKSAKTGNEPGITKAEQRLFLADD
                     FWLYDTPGMLWPKIIVEESGYNLAAGGSVGRNALDEEEVALELLDYLRRHYLPMLQER
                     YQADKDPSSHWDENVWLEWIAKKRGAVLSGGRINYQKAAENILTDFREGKIGRITLET
                     PNQWETWLKKARQKEAELKAIREARKAERKGQKPSEA"
     gene            7521..8123
                     /locus_tag="ACFM6C_001085"
     CDS             7521..8123
                     /locus_tag="ACFM6C_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA];
                     GO_process: GO:0051304 - chromosome separation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HFC6158551.1"
                     /translation="MTDKISPDALIEAALLTQTEPLTEKSMRELCVPPLSQDKLIDVL
                     AQLKTRWQDRALQLVHTQEGWRFQIVQTAFERLGSLQEQRAPRYSRAVMETLAIIAYQ
                     QPVTRGDIEGIRGVAVSQNVIQTLQDRGWIEVIGHRDTLGKPALWATTATFLSDLRLD
                     GLEELPPLTELGELVLPDLIEMPLTDEEEPEAVPSDTLPN"
     gene            8307..9980
                     /gene="recN"
                     /locus_tag="ACFM6C_001086"
     CDS             8307..9980
                     /gene="recN"
                     /locus_tag="ACFM6C_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HFC6158552.1"
                     /translation="MLLTLSLRDFVIVENLNLDFQSGFTVLTGETGAGKSITLDAIGL
                     LLGDKADYSQVRSGAKEAQLSALFDISHLPVLKAELYEQGLLNDGEEELSIRRIIDAK
                     GKSRSFINNQAATLAQLKSVGSQLIDIHGQNAHHSLNQEAAQRELLDAFAGSRAQAET
                     VRQLYQNWANAKKALQEAQEHADAVIIERERLEWQFNELNQLDIKQGEWEALSQSHDS
                     LAHSAELLQAAEEVGSKIDGDNGIQRHIYQCQKLLANLQNIEPRFAESLNMLASIEAE
                     LGEISANMRDVAGWSDINPNELAAQEQRMGELMGMARKYRIEPEELPAKLAEIEECLQ
                     SLQAAADLDALEHNVAHNFAEYQEAAHILSAMRHQAAERLSGETTEHMQHLAMKGARF
                     DIVLLPSSPTAHGLEQVQFQVAANKGNPPRPLNKVASGGELARISLALQVVASQYTQV
                     PTLIFDEVDTGIGGGVAEMVGKALRALGRKHQVLAVTHLPQVASCGENHWRVRKHSEG
                     EQTVSEISILDEIQRIEEVARMLGGEVITDTTRQHAAELLQLASKNSLF"
     gene            10090..10166
                     /locus_tag="ACFM6C_001087"
     tRNA            10090..10166
                     /locus_tag="ACFM6C_001087"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10124..10126,aa:Arg,seq:acg)
     gene            10184..10258
                     /locus_tag="ACFM6C_001088"
     tRNA            10184..10258
                     /locus_tag="ACFM6C_001088"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10217..10219,aa:Glu,seq:ttc)
BASE COUNT         2500 a         2609 c         2816 g         2451 t
ORIGIN      
        1 tagggctgta accttcaatc ggaatttgtt gcctgcggga tatacggtat gaatgtttgg
       61 gatatatgga gcaggatggt ggaaatctat cataagtata agaagccgtg cctggttttg
      121 gcggtggatt ttgtgatggg tatggtattc atagagccga atgaggagcc gtgcatcggt
      181 aggtgctatg cgcctatgtc ggagtcccct gattttgcta acgctgttgc gatggctgtt
      241 gctatgatct gtatcgtatg gattgccgtt ttatagtgga ttaaatttaa accagtacgg
      301 cgttacctcg ccttgccgta ctatttgtac tgtctgcggc ttcgtctcct tgtcctgatt
      361 tttgttaatc cactatatct atgactgatt gaagcgttgg gcggaggctg cgtgaaacgg
      421 tattgggcgt tgggccgtct gattccaatc gggcttgagg aatgcgaaac ggtgtgcgct
      481 tatgttgcgg aacgatttgt ttcgcggttt tgcgcccgaa acggatggaa aggtgtggga
      541 agcggtctgt cggagtagaa tacgcgtttg cgtttgaata cagtaagaag aaaagagaga
      601 aacttatgcc gtctgaacat caacacacat catcattgct tgatttcgac cgtacccatc
      661 tgcttcatcc ctatacttcc atgaccgatc cgcttcccgt ttatcctgtc aaacgtgcag
      721 aaggggtgtt tatcgaattg gcggacggca cacggctgat tgacgggatg tcgtcttggt
      781 ggtgtgcgat acatggttac aatcatcctg ttttgaatca ggcggttgag gcgcagatta
      841 agcaaatgtc gcatgtaatg tttggcggtt tgacgcacga tcctgcggtg gaactgggca
      901 agttgttggt cggaattttg ccgcaggggt tggaccgtat tttttatgcg gattctggtt
      961 cggtttcggt agaagtcgcg ttgaaaatgg cggtgcaata ccagcaggcg cgggggttga
     1021 cggcgaagca gaatattgcg acggtacggc gcgggtatca cggcgatact tggaacgcga
     1081 tgtccgtctg cgatccggaa acggggatgc accatatttt cggcagcgcg ttgccgcagc
     1141 gttattttgt cgataatccg aaaagccgtt tcgacgatga atgggacgag gcggatttgc
     1201 agcctgtccg cgccttattt gaagtgcatc atgcggatat tgccgccttt attttagagc
     1261 cggtcgtgca gggcgcgggc ggcatgtatt tttatcatcc gcagtatctt cgcggattgc
     1321 gcgatttgtg cgacgaattt gatatcgttt tgatttttga tgaaatcgcc accggattcg
     1381 ggcgcacggg caagatgttt gcctgcgaac acgcggaggt cgtgccggat attatgtgca
     1441 tcggcaaggg tttgagcggc ggctatatga cgctggcggc agcaatcact tcgcaaaaag
     1501 ttaccgaaac gatttcgcgc ggcgaagcgg gcgtgtttat gcacggcccg acgtttatgg
     1561 caaacccgct ggcgtgtgcc gttgcctgcg cttcggtcaa actgcttttg tctcaagact
     1621 ggcaggcaaa tatccgccgc attgaaagca tcttaaaagg ccgtctgaaa gccgcgtggg
     1681 acattcgcgg cgtgaaagac gtgcgcgttt taggtgccat cggggtgatc gagctggaaa
     1741 aaggcgtgga tatggcgcgt tttcaagcgg attgcgtggc gcagggcatt tgggtgcgcc
     1801 cgttcggcag gctggtgtat ctgatgccgc cttacatcat ttcagacggc gttttgacca
     1861 aacttgccga caaaaccgtg caaatcttga aggaacacag caaatgaaag gcgtttactt
     1921 cgtcagcggc atagacacgg acatcggcaa aaccgtcgcc accggcgtgt tggcaaaaca
     1981 attgttgcag cagggcaaaa gcgtgattac gcaaaagccc gtgcaaaccg gttgccaaaa
     2041 cattgccgac gacatcgccg tccatcgtaa aatcatgggt aaacccatgc aggaagccga
     2101 caaacaaggg ctgaccatgc ctgaaatctt cagttatcca gcttcgcctc atctcgctgc
     2161 ccgtcttgac ggcagggctt tggacttgga caaaatccgc accgccacac aagaattggc
     2221 ggcgcagtac gaagtcgttt tggtcgaagg cgcgggcgga ttgatggttc cgctgacgga
     2281 agatttgtta accattgatt atattcagca acaagattat cccgtcatcc tcgttaccag
     2341 cggacggctg ggcagtatca accacacttt actcagtttc gccgcgctca aacaatacgg
     2401 catccgcctg cacagcctga ttttcaacca tattcacgac agttccgacg aatgtgtcgc
     2461 gcaagacagc ctgaactatc tgcaatgccg tctgaaagac agtttccccg aggcggaatg
     2521 gttggagttg gataaaacag acgcggtata aagattggga aaaatatgga acacctattt
     2581 gggaaatggc tgcccgacct gcccgccgac gtttcagacg gcatcagcct gccgatggtg
     2641 cggctgctgc acacccggtc gctgaccgcc gcattgcgcc ccttgccgca tacattttcg
     2701 gtggaactgc tgaaactggg cgaattggag acggaatgcg gagggaggct ggtgcgcgaa
     2761 gttttgttga agctggaccg tatccctgtt gtcgcggcaa ggagcgagtg ccggataggt
     2821 tcggcgtttt ggcaaaacat tttggactgc ggcacgcgcc ctttgggcga gcgtctgttt
     2881 caagccgatt tggaaggggc gcgttcggcg tttgagtttg ccgttgccgg cgaaggatgc
     2941 ggacggtact ttgccgcgcg gcgttctcgg ttttcccgtc acggcgagga aatgctgctg
     3001 accgagtatt ttctgcccga actgaaacgc tttatcggat aaaataccgt tttttcaagc
     3061 tgtgcggcaa tatgaatcct aaatcccctt tatttttacg actgtccgac cgtttggatg
     3121 tgtacctgcg cctgatgcgg gcggacaagc ccattgggac gctgctttta ctgtggccga
     3181 cctactgggc attgtggctg gcttcagacg gcattcccga tttggcggta ttggcggcgt
     3241 ttacaatcgg tacgttttta atgcgcagtg ccggttgcgt catcaacgat tttgccgacc
     3301 gcgattttga cggggctgtc gagcgcacta aaaaccgtcc gttcgcacag ggtcgggtcg
     3361 gaaaaaaaga agcgctgctg ctgacggcat ttttgtgcct gcttgccgca ttgtgcctga
     3421 ttccgctgaa tcatctgaca tggctgatga gcctgcccgc gctgtttctt gcgctgactt
     3481 acccgtttac caaacgcttt tttccgattc cccaactcta tctcgggctt gccttttcct
     3541 tcggtatccc gatggcgttt gccgcagtgg gcaacagcgt ccccgttgaa gcatggatac
     3601 tttttaccgc caatgtttta tggacactgg cttacgacac ggtttatgca atggcggaca
     3661 aagaggacga tttgaaaatc ggcatcaaaa cctccgccgt cacgttcggg cgttacgaca
     3721 tcgccgccgt tatgctgtgt cacggaggct ttaccctgct gatggcagta ttgggggcgg
     3781 ttatcggtgc ggcatgggca tattggacgg caatccccat cgtcctgctg ctgcaatacc
     3841 gccaatatgc cgccatcaaa agccgcgtcc ggcaaatctg ttttgaaacg tttttggcaa
     3901 acaacagaat tggttgggtg tggtttaccg ccatttttgc ccatacgttt ttcgcgaaat
     3961 aaggcagggc aatgccgtct gaagagccgt aaactgcttt ggacggcatt tctatctgtg
     4021 ccgaaaagcg ttaaaatatg tttttaaaac gctgtgttat gtcagcccgt accgtatgcg
     4081 ggattgagat ttgccccggc agtcggtaca atctttctgt tttgcgatgt ctgaaaagag
     4141 aagcttatga gccttatcgg cgaaattttg cctttgtccc atattgtttt ggatatggag
     4201 gtgggcagta aaaaaaggct gtttgaggaa gcaggcctgc ttttggaacg cgaatcctca
     4261 ttgtcccatg ctgatgtttt cgaatgtctt tttgcccgtg aaaaactcgg ttcgaccggt
     4321 ttggggcagg gcgttgccat cccgcacggc cgtcatgccg gcgtgaagca ggcgacgggc
     4381 gcgttcatcc gcacgcgcga acccgtcgga tttgacgcac cggacggcaa accggtttcc
     4441 ctggttttta tcttgctggt tcctgagaat gcaacgggcg agcatttgga ggtattgtcc
     4501 aaactggccg gcaagttttc ccaaaaaagc atccgcgaat cgctgatgac ggtttcttct
     4561 gcggaagaag cccgcgccat cctgaccgaa gaataaaata tgcccagtat ctctgtccgc
     4621 cgactgtttg acgacaacca atacaagttg caactcgcct gggccgccgg caattcgggt
     4681 gcggacaacc gtatcggcgt agaggcggac aagcccgtcc tcgccttggt cggacacctg
     4741 aatttcatcc accccaacca aatccaagtg gtcggtttgg cggagtcgga atatctgaac
     4801 cgtctcgaat cgggggaaac gggttatcag ttcggcgacc tgttcgacat ttctatgtct
     4861 ttggttattg tggcaaacgg cttgccggtt tccccgggac tgcgcgacta ctgccataaa
     4921 aacgatattc cactgctgac ttccaaactc gaaagcccct atctgatgga cgtgttgcgg
     4981 atttacctgc aacgcaccct ggcggcatcg tccgtcaaac acggcgtatt tctcgatgtg
     5041 tttgaaatcg gcgtgctgat taccggacat tcgggtttgg gtaagagcga attggcgttg
     5101 gagctgattt cgcgcggcca cagcctgatt gccgacgatg cggtcgagct gttccgcatc
     5161 ggcccggaaa cgctggaagg gcggtgttcg cctatgctgc gcgatttttt ggaagtgcgc
     5221 ggcttgggga tactcaatat ccgccatatt ttcggcgaaa cttccatccg ccccaaaaaa
     5281 atcctgcaac tcattatcaa tttggtcgag gcagacgacg agtatatgaa gcagctcgac
     5341 cggttgagta tccgcaccga aaccgaatcc atcctcaacg tcaacgtccg ttcggtaacg
     5401 ctgcctgtcg cggtcggacg caaccttgcc gtattggttg aagcggcggt acgcaattac
     5461 attttgcagt tgcgcggtaa ggacagtacg cgcgaatttt tggaacgcca tcagacgcaa
     5521 cttaaagaaa acgaacagaa tcatgaaaat cgtcctgatt agcgggttgt ccggttcggg
     5581 caaatccgtc gcactgcgcc aaatggaaga ttcgggttat ttctgcgtgg acaatttgcc
     5641 tttggaaatg ttgcccgcgc tggtgtcgta tcatatcgag cgtgcggacg aaaccgaatt
     5701 ggcggtcagc gtcgatgtgc gttccggcat tgacatcgga caggcgcggg aacagattgc
     5761 ctatctgcgc ggactggggc acagggttga agttttgttt gtcgaggcgg aagaaagcgt
     5821 gttggtccgc cggttttccg agaccaggcg aggacatcct ctgagcaatc aggatatgac
     5881 cctgttggaa agcttaaaga aagaacggga atggctgttt ccgcttaagg aaatcgccta
     5941 ctgtatcgac acttccaaga tgaatgccca acagctccgc catgcagtcc ggcagtggct
     6001 gaaggtcgaa cgtaccgggc tgctggtaat tttggagtcc ttcgggttca aatacggtgt
     6061 gccgaacaac gcggatttta tgttcgatat gcgcagtctg cccaacccgt attacgatcc
     6121 cgagttgagg ccttacaccg gtatggacaa gcccgtttgg gattatttgg acggacagcc
     6181 gcttgtgcag gaaatggttg acgacatcga aaggtttgtt acgcattggt taccgcgttt
     6241 ggaggatgaa agcaggagct acgttaccgt cgccatcggt tgcacgggag gacagcaccg
     6301 ttcggtctat attgtcgaaa aactcgcccg aaggttgaaa gggcgttatg aattgctgat
     6361 acggcacaga caggcgcaaa acctgccgag ccgttaatcc cattaaacaa ttatgccgtc
     6421 tgaaaccccg cttttctgtt tcagacggca tttcaaatat tgagaagaaa ggaaagatat
     6481 ggcaatccaa tggtttcccg gtcatatgaa caaggcgaaa aaagccatcg ccgagcgtgc
     6541 aaaaagcgtt gatatggtga ttggaatgct ggacgcgcgt atgcccgcct ccagcgaaaa
     6601 ccccctgctt gcccagcttt ccaaaggcaa acccaaactt aaaatcctaa acaaacaaga
     6661 tcttgccgac cccgaacgca caaaggtctg gcttgaccac tacaacagcc gccccgacac
     6721 gtgcgccatt gccctcgatt cctccgaaac cggcgcacac ggcaaaatca cccaagcctg
     6781 ccgcgcgatg attccccacc ggcaaggcat agacaaaccc ttgcgcgtct tgatttgcgg
     6841 cattcccaac gtcggcaaat ccaccctcat caacggcatg ataggcaaaa aatccgccaa
     6901 aaccggcaac gaacccggca tcaccaaagc cgaacaacgc cttttccttg ccgacgactt
     6961 ctggctgtac gacacccccg gaatgctgtg gccgaaaatc attgtcgaag aaagcggcta
     7021 caacctcgcc gccggcggtt cagtcggacg caacgcattg gacgaagaag aagtcgccct
     7081 cgaactttta gactacctcc gccgccacta cctccctatg ttgcaagaac gctaccaagc
     7141 cgacaaagac cccagcagcc actgggacga aaacgtttgg ctcgaatgga tagccaaaaa
     7201 acgcggcgca gtcctcagcg gcggacggat caactaccaa aaagccgccg aaaacatcct
     7261 taccgacttc cgtgaaggca aaatcggcag aatcaccctc gaaacgccga accaatggga
     7321 aacttggctc aaaaaagccc gtcagaaaga agccgaactc aaagccatac gcgaagccag
     7381 aaaagcagag cgtaaagggc agaagccttc ggaagcataa agaatgccgt ctgaaaaata
     7441 tttttcaggc agcttctctc tactccaacc gatttcagac ggcatatcca aacccatgcc
     7501 gtttcagcac ggatacccgt atgaccgaca aaatttctcc cgacgcacta attgaagccg
     7561 cactgctgac ccaaaccgaa ccgctgaccg aaaaatctat gcgcgaattg tgtgtgccgc
     7621 cactgtcgca ggacaaactg attgatgtgt tggcgcagtt gaaaacgcgt tggcaggata
     7681 gggcgttgca actggtgcat acgcaagagg gctggcgttt tcagattgtt cagacggcat
     7741 tcgagcggct gggcagcctg caagaacagc gtgcgccgcg ctactcccgc gccgtgatgg
     7801 aaacactggc gattatcgcc taccagcagc ccgtaacgcg cggcgacatc gaaggcatac
     7861 gcggtgtggc ggtgtcgcag aacgtgatcc agaccttgca ggatcggggg tggattgaag
     7921 tcatcggaca tcgggacaca ttgggaaaac ccgcattgtg ggcaacaacg gcaacgtttc
     7981 tcagcgattt gcgcttggac ggtctggaag aacttcctcc gctgaccgaa ctgggcgaac
     8041 tggttttgcc cgatttgata gaaatgccgc ttacggatga agaagagccg gaagccgtac
     8101 cgtccgatac cctgcccaac tgaaattcca aatgccgtct gaaacgcaca ttgcttcaga
     8161 cggcattgca acaaataagc agataaaaac aagtactaag caaaattaag gaaaacttat
     8221 ttttaattta aaaaaatctt agttataatt cgtatatcta aagttgatat tgcttttgtc
     8281 ggtagaattg ctaaggaatc ctcacaatgc ttctaacact ttctttgcgt gattttgtca
     8341 ttgttgaaaa tctgaatctg gattttcaaa gcggctttac cgtattgacc ggagaaaccg
     8401 gcgcgggcaa gtccattact ttggatgcga ttggtctgct gttgggcgac aaagccgatt
     8461 acagccaagt ccgcagcggt gcaaaagaag cgcagttgtc ggcattgttc gatatttccc
     8521 atttgcctgt tttaaaagca gaattgtatg aacaggggct tttaaacgac ggagaagaag
     8581 aactcagtat ccgccgcatt atcgatgcca aaggcaaaag ccgcagcttt atcaacaatc
     8641 aggccgctac cttggcgcaa ctcaaatccg tcggtagcca gcttatcgac atccacgggc
     8701 aaaacgccca tcattcgctt aatcaggaag ccgcccagcg cgaattgttg gacgcatttg
     8761 cgggtagcag ggcgcaggcg gaaaccgtca ggcagcttta tcaaaattgg gccaatgcga
     8821 aaaaagccct ccaagaggcg caggaacacg ccgatgccgt cattatcgag cgggagcgtc
     8881 tggaatggca gtttaacgaa ctgaatcagt tggacattaa acaaggcgaa tgggaagccc
     8941 tcagccaaag ccacgacagc cttgcccatt ctgccgagct gttgcaggct gccgaagaag
     9001 tcggaagcaa gattgacggc gacaacggca tccaacgcca tatctatcaa tgtcaaaagc
     9061 tattggccaa tctgcaaaac atcgagccgc gctttgccga gagcctgaat atgttggcaa
     9121 gcatcgaagc cgaattgggc gaaatcagtg ccaatatgcg cgatgtggca ggttggagcg
     9181 acatcaatcc caatgaattg gcggcacagg aacagcgtat gggcgaactg atggggatgg
     9241 cgcggaaata ccggatcgaa cctgaagagt tgcctgccaa gttggcagaa atcgaagagt
     9301 gcctgcaaag cctgcaagct gccgccgatt tggacgcgct cgagcataat gttgcccaca
     9361 attttgccga atatcaggaa gctgcccaca tcctttctgc catgcgccat caggcggcag
     9421 agcgtttgag cggcgaaacg accgagcata tgcaacacct tgccatgaaa ggtgcacgtt
     9481 tcgacatcgt cctgttgcct tcgtcgccga cggcacacgg tttagagcag gttcaatttc
     9541 aagttgccgc caacaaaggc aatccgcccc gtccgctgaa taaagttgcc tccggcggcg
     9601 aattggcgcg tatcagcctt gccttacagg ttgttgccag tcaatatacc caagttccca
     9661 ccctgatttt tgatgaggtc gataccggta ttggaggggg agtggctgaa atggtcggca
     9721 aggcattacg tgcgttgggc agaaaacatc aggtgcttgc cgttacccac cttccccaag
     9781 tcgcatcctg cggagaaaac cactggcggg tgcgcaagca cagcgaggga gagcaaaccg
     9841 tcagcgaaat cagtatattg gatgaaatcc aacggatcga agaggttgcc cgtatgttgg
     9901 gcggagaagt cattaccgat acgacgcggc aacatgcggc agaattgctg caacttgcgt
     9961 cgaaaaatag tttattttaa aatcaatcag ttaaaaaata actaaaaata aaagtctaaa
    10021 acaatagaca gaactcagat aaatccgtat tatcacgctt tcttaatcac ttgaacaagt
    10081 gattgtgctg cacccgtagc tcagttggat agagtatctg gctacgaacc agagggtcgg
    10141 gcgttcgaat cgctccgggt gcgccagtaa gaaaatacaa tatgcgccca tcgtctagcg
    10201 gttaggacat cgccctttca cggcggtaac cggggttcga ttccccgtgg gcgtgccagt
    10261 ttaaaatgcc tccgatatga tctgaggcat ttcccatttc ccatttccca tttcccattt
    10321 cccatttccc atttcccatt tctcatttct catttctcat ttctcatact gagacc
//
LOCUS       DAXHPV010000059        10169 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.059, whole genome shotgun sequence.
ACCESSION   DAXHPV010000059 DAXHPV010000000
VERSION     DAXHPV010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10169)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10169)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10169
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.059"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(238..1455)
                     /locus_tag="ACFM6C_001089"
     CDS             complement(238..1455)
                     /locus_tag="ACFM6C_001089"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HFC6158553.1"
                     /translation="MALIVHKYGGTSVGSPERIKNVAKRVAKARAEGHDIVVVVSAMS
                     GETNRLVALAHEMQEHPDPRELDVVLSTGEQVTIGLLAMALKDIGVDAKSYTGWQVAL
                     KTDTAHTKARIESIDDEKMRADLTAGKVVIVAGFQGISSEGDISTLGRGGSDTSAVAL
                     AAALKADECQIYTDVDGVYTTDPRVVPEARRMDTVTFEEMIELASLGSKVLQIRSVEF
                     AGKYKVRLRVLSSLQDGGNGTLITFEEDDNMERAAVTGIAFDKNQARINVRGVPDKPG
                     VAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDYKQTLEILSERQDSIGAAS
                     IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLIDEKYME
                     LATRVLHKAFNLG"
     gene            complement(1657..2385)
                     /gene="rph"
                     /locus_tag="ACFM6C_001090"
     CDS             complement(1657..2385)
                     /gene="rph"
                     /locus_tag="ACFM6C_001090"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0009022 - tRNA nucleotidyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HFC6158554.1"
                     /translation="MPDYIRTSRAADSLRDIKITPHFLPHTDGSCLIECGNTKVICTA
                     SIDENVPPFLRGKNQGWVTAEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLR
                     AVVDMEKLGERQILIDCDVIQADGGTRTASITGAFVALQIAVGKLVSDGILSENPIRE
                     AVAAVSVGVVNGVPLLDLDYPEDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELG
                     KLVALAQKGIGELLQHQQNALSAA"
     gene            complement(2467..2931)
                     /locus_tag="ACFM6C_001091"
     CDS             complement(2467..2931)
                     /locus_tag="ACFM6C_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HFC6158555.1"
                     /translation="MYKHLVVAVDGSETSINALKHAAELAGVNGARLTLVHVANPAEY
                     MALAPEFLQHESYEAAAVAQGNEVLDAAERTARELGVENTVKHLLVANKGAREMAQDL
                     VDYADENGADLLVLGTHGRTGLMHLLMGSFAETVMRQSHLPLLIIRSKAEEA"
     gene            3148..3924
                     /locus_tag="ACFM6C_001092"
     CDS             3148..3924
                     /locus_tag="ACFM6C_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HFC6158556.1"
                     /translation="MSDNALTSSRRFGGIARLYGDSALAHFSQAHVCVVGVGGVGSWA
                     VEALARTGIGRLTLIDLDNVAESNVNRQLHALTGDFGKAKVTALRERVAQINPGCQVF
                     EIEDFVTEDNLPEYFGKGFDFVIDAIDQVRVKAAMAAYFVERKQPFVLSGGAGGQKNP
                     ALIQTADLSRVTHDPLLANLRYTLRKRYGFSRDTKANMRVPCVYSTENIVPPQSREAC
                     SADAAPQGLSCAGYGASMLVTASFGLYCAQAAVEHIADKK"
     gene            3928..4059
                     /locus_tag="ACFM6C_001093"
     CDS             3928..4059
                     /locus_tag="ACFM6C_001093"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158557.1"
                     /translation="MPSETGFRRHLNKRGNQAVGSEKPTSARLKPYSQPAPFQNICI"
     gene            4169..5023
                     /locus_tag="ACFM6C_001094"
     CDS             4169..5023
                     /locus_tag="ACFM6C_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ScpA family protein"
                     /protein_id="HFC6158558.1"
                     /translation="MPPIPAPSAPSEHTVAWVFGQPVTDLPQDLFIPPDALKVVLGSF
                     QGPLDLLLYLIRKQNIDVLDIPMVKITEQYLHYIAQIEAYQFDLAAEYLLMAAMLIEI
                     KSRLLLPRTETVEDEEADPRAELVRRLLAYEQMKLAAQGLDALPRAGRDFAWAYLPLE
                     IAVEAKLPEVYITDLTQAWLGILSRAKHTRSHEVIKETISVRAQMTAILRRLNGHGIC
                     RFHDLFNPEQGAAYVVVNFIALLELAKEGLVGIVQEVGFGEIRISLNHEGAHSDGISG
                     TRGGRDVF"
     gene            5064..6272
                     /gene="pncB"
                     /locus_tag="ACFM6C_001095"
     CDS             5064..6272
                     /gene="pncB"
                     /locus_tag="ACFM6C_001095"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004516 - nicotinate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HFC6158559.1"
                     /translation="MTGIIHSLLDTDLYKFTMLQVVLHQFPQTHSLYEFRCRNASTVY
                     PLADIKEDLEAELDALCRLRFTHDELGYLRSLRFIKSDFVDYLELFQLQRRFVEIGTD
                     DKDRLNIRIEGPMIQAMFFEIFILAIVNELYFRRLETPAVIEEGERRLQAKAARLKEI
                     AAAQNPDDPPFLISDFGTRRRYKLAWQEHVIRTLLEAAPSIVRGTSNVFLAKKLGITP
                     IGTMAHEFLQAFQALDVRLRNFQKAALESWVHEYRGDLGVALTDVVGMDAFLRDFDLY
                     FAKLFDGLRHDSGDPYVWGDKAYAHYQKLKIDSRTKMLTFSDGLDIERSWALHQYFKD
                     RFKTGFGIGTNLTNDMGHTPLNIVLKLVECNGQSVAKLSDSPGKTMTNNSTFLAYLRQ
                     VFDVPEPETP"
     gene            6364..8082
                     /gene="argS"
                     /locus_tag="ACFM6C_001096"
     CDS             6364..8082
                     /gene="argS"
                     /locus_tag="ACFM6C_001096"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HFC6158560.1"
                     /translation="MNLHQTVEHEAAAAFAAAGIADSPVVLQPTKNAEHGDFQINGVM
                     GAAKKAKQNPRELAQKVADALAGNAVIESAEVAGPGFINLRLRPEFLAQNIHAALNDA
                     RFGVAKTDKPQTVVIDYSSPNLAKEMHVGHLRSSIIGDSISRVSEFMGNTVIRQNHVG
                     DWGTQFGMLVAYLVEQQKDNAAFELADLEQFYRAAKVRFDEDPAFADTAREYVVKLQG
                     GDETVLALWKQFVDISLSHAQAVYDTLGLKLRPEDVAGESKYNDDLQPVVDDLVQKGL
                     AVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLYASTDLACLRYRVGTLHADRLLY
                     VVDHRQALHFEQLFTTSRKAGYLPENVGAAFVGFGTMMGKDGKPFKTRSGDTVKLVDL
                     LTEAVERATALVKEKNPELGADEAAKIGKTVGIGAVKYADLSKNRTSDYVFDWDAMLS
                     FEGNTAPYLQYAYTRVQSVFRKTGEWDADAPTVLTEPLEKQLAAELLKFEDVLQSVAD
                     TAYPHYLAAYLYQIATLFSRFYEACPILKAEGASRNSRLQLAKLTGDTLKQGLDLLGI
                     DVLDVM"
     gene            8652..10070
                     /locus_tag="ACFM6C_001097"
     CDS             8652..10070
                     /locus_tag="ACFM6C_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HFC6158561.1"
                     /translation="MNIHTLLSKQWTLPPFLPKRLLLSLLILLAPNAVFWVLALLTAT
                     ARPIVNLDYLPAALLIALPWRFVKIAGVLAFWLAVLFDGLMMVIQLFPFMDLIGAINL
                     VPFVLTAPTPYQIMTGLLLLYMLAMPFVLQKAAAKTDFRHIAVCAAVVAAAGYFTGHL
                     SYYDRGPMANIFGANNFYYAKSQAMLYTVSQNADFITAGLVDPVFLPLGNQQRAATHL
                     NEPKSQKILFIVAESWGLPANPELQNATFAKLLAQKDRFSVWESGSFPFIGATVEGEM
                     RELCAYGGLRGFALRRAPDEKFARCLPNRLKQEGYATFAMHGAGSSLYDRFSWYPRAG
                     FQEIKTAENLIGKKTCAIFGGVCDSELFGEVSAFFKKHSKGLFYWMTLTSHADYPESD
                     IFNHRLKCTEYGLPAETDLCRNFSLHTQFFDQLADLIQRPEMKGTEVIIVGDHPPPVG
                     NLNETFRYLKQGHVAWLHFKIK"
BASE COUNT         2333 a         3003 c         2562 g         2271 t
ORIGIN      
        1 cttagctcaa agagaacgat tctctaaggt gctgaagcac caagtgaatc tgttccgtac
       61 tatttgtact gtctgcggct tcgtcgcctt gtcctgattt ttgttaatcc actataaatt
      121 taatccacta tattttttgt tccaaagtca aaatatgccg tccgaacatt cgggcggcag
      181 acaaaacggc actgcccgat aaaggcagtg ccgttgtccg tttcaaaccg tgaaacatca
      241 gcccaaatta aaggctttat gcaataccct ggttgccagt tccatgtatt tttcatcaat
      301 caatacggaa actttgattt cggaggtgga aatcatttgg atgttgatac cctcttcggc
      361 gagcgtgcgg aagattttgg cggctacacc gacgtgcgaa cgcataccca aaccgactgc
      421 agagactttg catacggtgt cgtcgccatc aatagaagcc gcgccgatac tgtcttggcg
      481 ttccgacagg atttccaaag tctgcttgta atcgccgcgc ggtacggtaa aggaaaaatc
      541 ggttgtgcct tcgctgccga cattttggat aatcatatcg acttcgatgt tggcatcggc
      601 gaccgcgccc aaaatctgat aggcgacacc gggtttgtcg ggtacgccgc gcacgttgat
      661 gcgggcttgg tttttgtcga atgcgatacc ggttacggca gctctttcca tgttgtcgtc
      721 ctcttcaaag gtaattaagg tgccattgcc gccgtcttgc aggctgctca gtacgcgcag
      781 gcgcactttg tactttccgg cgaattctac tgaacggatt tgcaagactt tcgagccgag
      841 gcttgccaat tcgatcattt cttcaaatgt aaccgtatcc atgcggcgcg cttcgggtac
      901 gacgcgcgga tcggtggtgt acacgccgtc cacgtcggta tagatttggc attcgtccgc
      961 tttgagggct gcggcaagcg caacggcgga agtgtcggaa ccgccgcgtc cgagcgtgga
     1021 aatatcgcct tcactgctga tgccttggaa gccggcaacg atgacgactt tgccggcggt
     1081 aaggtcggca cgcatttttt cgtcatcaat gctttcgatg cgggctttgg tgtgggcggt
     1141 atcggttttg agggcgacct gccagcctgt gtagcttttg gcatccacgc cgatgtcttt
     1201 caatgccatc gccaaaaggc cgatggttac ttgttcgccg gtggacaaaa ccacgtccaa
     1261 ttcgcgcgga tcgggatgct cctgcatttc gtgcgccaac gcgaccaggc ggttggtttc
     1321 accgctcatg gcggatacga cgacgacaat gtcgtgtcct tcggcgcggg ctttggcgac
     1381 acgtttggcc acgtttttaa tgcgttcggg cgagcctacg gatgtgccgc cgtatttgtg
     1441 tacgattaac gccatgtttc gtgctttctt gtgtgggatt ggtcgggcag catggtttgc
     1501 tggaaaagcg gctattatta ctatttttta catgaagttc aagaacggac tgcgctttcc
     1561 cgcctgccgt ttgacagcgg tcagcgaaaa acctgttctt tcagattgtt gacaaaatgc
     1621 cgtctgaacg gttttcagac ggcatccgga cgacaatcag gcggcggaca acgcattttg
     1681 ctggtgttgc agcagttcgc ctatgccttt ttgcgccagt gcaaccagtt tgcccaattc
     1741 gtccaaactg aacggcgcgt cttccgccgt accttggatt tcgatgattt ttcccgatgc
     1801 ggtcatgacg atattcacat cactgtcgca accggagtct tcgggataat ccaaatccaa
     1861 aagcggcacg ccgttcacta cgcctactga cacagcggca acggcttcgc ggatggggtt
     1921 ttcactcaaa atgccgtctg aaaccagttt gccgacggcg atttgcagcg cgacaaacgc
     1981 accggtaatc gaagccgtgc gcgtaccgcc atctgcctga atcacatcgc agtcaatcaa
     2041 gatttgtcgt tcgccgagtt tttccatatc tacgaccgcg cgtagcgaac gcccgataag
     2101 gcgttggatt tcttgtgtgc gcccggactg tttgcccgcc gaagcttcgc ggcgcatccg
     2161 ggaagcagtt gaggcaggca gcatcccgta ttctgcggtt acccagcctt ggtttttgcc
     2221 gcgcaaaaac ggtgggacat tttcgtctat ggaagcggta caaatcactt tggtattacc
     2281 gcattcaata aggcacgaac cgtccgtatg cggcaggaaa tgaggggtga ttttgatatc
     2341 gcgcaggctg tcggcggcgc gtgaggtgcg gatgtaatca ggcatactgc cctcccgtta
     2401 aaaacagata aattaaaaag ccttaaatat gaaaaatcac atttaaggcc ttcaaactga
     2461 aaatttctac gcctcttcgg ctttgctgcg gataatcaaa agcggcaggt ggctttggcg
     2521 cattaccgtt tcggcaaaac tgcccattaa aaggtgcatc agcccggtac gtccgtgcgt
     2581 acccaacacc agcaagtcgg caccgttttc atcggcataa tcaaccaaat cctgcgccat
     2641 ttcacgcgca cccttattgg caaccagcag gtgtttgacg gtattttcca cacccagttc
     2701 ccgggcggtg cgctcggcgg catccaaaac ttcgttgcct tgcgcgacgg cggcggcttc
     2761 gtagctttcg tgttgcaaaa attcgggggc gagcgccata tattcggcag gattggcaac
     2821 gtgtaccaaa gtcagacgcg caccgttgac cccggcaagc tcggcggcat gtttcagggc
     2881 attgatggac gtttcactgc cgtcaacggc aacaaccaga tgtttgtaca tatcgtattc
     2941 tccttttgca ccgcctcgcg gtgccctctt gtcggatggg cgcagggaca gtttgcgccg
     3001 tttcattata gacccgctgt cgggctttat acaacagccg aacagcccga ccgctttcca
     3061 gtataatatg ccgcttccgt gcagtcaggc attttttgcc ggctttcgtt cactttttga
     3121 tttgacgcaa tcttgcagga ttcgaccatg tccgacaacg ctttgacctc ttcgcgacgc
     3181 ttcggcggca tcgccagact ctacggagac tctgccttgg cgcacttttc acaggcacac
     3241 gtctgcgtag tcggcgtggg cggtgtcggc tcgtgggcgg tcgaggcttt ggcgcggacg
     3301 ggcatcggac gtttgacttt gattgatttg gacaacgttg ccgaatcgaa tgtcaaccgc
     3361 cagctgcacg ccctgaccgg cgacttcggc aaagcaaaag ttaccgcctt gcgcgaacgc
     3421 gtcgcccaaa tcaacccagg atgccaagtg tttgaaattg aagatttcgt taccgaagac
     3481 aatttgccgg aatacttcgg aaaaggtttt gatttcgtca tcgacgcgat cgaccaagtg
     3541 cgcgtcaaag cagcaatggc ggcttatttt gtggaacgca aacaaccgtt tgtcctcagc
     3601 ggcggcgcgg gcggacaaaa aaatccggcg ttaatccaaa ccgccgattt gagccgcgta
     3661 acccacgacc cgctgcttgc caacctgcgc tacaccttgc ggaaacgcta cggattcagc
     3721 cgcgatacga aagcaaatat gcgcgtgcct tgcgtgtatt cgaccgaaaa tatcgtgccg
     3781 ccgcagtcta gggaggcttg ttcggcagat gccgctccgc aaggcttgtc gtgcgccggc
     3841 tacggtgcaa gcatgctcgt taccgcttcg ttcgggctat attgcgcaca ggcggcggtg
     3901 gaacacatcg cagacaaaaa ataagcaatg ccgtctgaaa caggattcag acggcatttg
     3961 aacaaacgcg gcaatcaagc tgtcggttca gaaaaaccaa catcggcacg cctaaaaccg
     4021 tattcacaac ctgctccttt tcaaaacatt tgcatttaaa agccgttata atgccgtctg
     4081 aacatctgcc cgaccacatt atgcgtgaat gtcggcagat tgttttcttt tgtaaactta
     4141 tattaaaatc cacttaccga ttcacgccat gccgcccatc cctgccccat ccgcaccatc
     4201 cgagcacact gtcgcatggg tattcggcca acccgttacc gatttgccgc aggatttgtt
     4261 tatcccgccc gacgcgctga aagtcgtatt gggcagtttt caaggccctt tggatttgct
     4321 gctctacctt atccgcaagc agaacatcga tgttctcgat attccgatgg tgaagattac
     4381 cgagcagtat ctgcactaca tcgcccaaat agaagcctat cagtttgatt tggcggcgga
     4441 atacctgctt atggcggcca tgctgattga aatcaaatcg cgcctgctgc tgccgcgtac
     4501 cgaaaccgtc gaagacgaag aagccgaccc gcgtgccgag ttggtgcgcc gcctgctggc
     4561 ttacgaacag atgaagctgg cggcgcaggg tttggacgcg ctgccccgag ccggacggga
     4621 tttcgcgtgg gcttacctgc cgctggaaat tgccgtcgaa gccaagctgc ccgaagtcta
     4681 tattaccgac ttgacgcaag cgtggctggg tattttgtct cgggcaaaac acacgcgcag
     4741 ccacgaagta atcaaagaaa ccatctccgt gcgcgcgcaa atgacggcaa tcctgcgccg
     4801 tttgaacgga cacgggatat gcaggtttca cgacctgttc aatcccgaac agggcgcggc
     4861 ttacgtggtc gtcaacttca tcgcactgtt ggagcttgcc aaagaaggtt tggtcggaat
     4921 cgtacaggaa gtcggtttcg gagaaatccg aatcagcctc aatcatgagg gggcacattc
     4981 agacggcatt tccggcacac ggggcgggcg cgatgtgttc taatacgccc caagccgcca
     5041 ccaaaaatcg ggagacacgc catatgaccg gcatcataca ttcgctgctt gacaccgacc
     5101 tctacaaatt cactatgctg caagtggttc tgcaccagtt tccgcagacg cacagccttt
     5161 acgaattccg ctgccgcaac gcctcgaccg tctatccgct tgccgacatc aaggaagact
     5221 tggaagccga actcgacgcg ctctgccggc tgcgcttcac ccacgacgaa ctcggctatc
     5281 tgcgctccct gcgtttcatc aaaagcgact ttgtcgatta tctcgaactc ttccagctcc
     5341 aacgccgctt tgtcgaaatc ggcacagacg ataaagaccg tctgaacatc cgtatcgaag
     5401 gtccgatgat acaggcgatg ttttttgaaa tcttcatcct cgccattgtc aacgaacttt
     5461 acttccgccg gctggaaacc cctgccgtta tcgaagaagg tgaacgccgg cttcaagcca
     5521 aagccgcgcg cctcaaagaa atcgccgccg cacaaaaccc cgacgatccg cccttcctga
     5581 tttccgactt cggcacgcgc cgccgctaca agctcgcgtg gcaggaacac gtcatccgca
     5641 ccctgctcga agccgcccca agcatcgtgc gcggcaccag caatgtcttt ctcgccaaaa
     5701 aactcggcat tacccccatc ggcaccatgg cgcacgaatt cctccaagcc ttccaggccc
     5761 tcgacgtacg cctgcggaat ttccaaaagg ccgcgctcga aagctgggtg cacgaatacc
     5821 ggggcgattt gggcgttgcc ctgaccgacg ttgtcggtat ggatgccttc ctgcgcgatt
     5881 tcgacctcta tttcgccaaa cttttcgacg ggctgcgcca cgacagcggc gacccttacg
     5941 tttggggcga caaagcctac gcccactatc aaaagctcaa aatcgacagc cgcaccaaaa
     6001 tgctgacctt ctccgacggg ctggacatcg aacgctcttg ggcattgcac caatatttca
     6061 aagaccgctt caaaaccggc ttcggcatcg gcaccaacct caccaacgat atggggcata
     6121 cgcccttgaa tatcgtcttg aaactggtcg aatgcaacgg gcagtccgtc gccaagctgt
     6181 ccgactctcc gggcaaaacc atgaccaaca acagcacctt cctcgcctac ctgcgccaag
     6241 tgttcgacgt acccgaaccc gaaacgccgt aaaccggcag aaaaagcgca caattcctgt
     6301 ttctgccgca taaaatcttt taaaataccg cctgatttga atttaaccga aagaccgaac
     6361 ttcatgaacc tacatcaaac cgtcgaacac gaagccgccg ccgcctttgc cgccgcaggc
     6421 atcgccgaca gtcccgttgt tttgcagccg accaaaaatg ccgaacacgg cgatttccaa
     6481 atcaacggcg tgatgggtgc ggcgaaaaaa gccaaacaaa acccgcgcga actggcgcaa
     6541 aaggtcgccg acgcattggc aggcaacgcc gtcatcgaaa gcgcggaagt cgccggtccc
     6601 ggttttatca acctgcgcct gcgccccgaa tttctcgctc aaaacattca tgcggccttg
     6661 aacgacgcgc gtttcggcgt ggcaaaaacc gacaaaccgc aaaccgtcgt tatcgactat
     6721 tcctcgccca atctggcaaa agaaatgcac gtcggccatc tgcgttccag catcatcggc
     6781 gacagcattt cgcgcgtgtc agaatttatg ggcaataccg ttatccgtca aaaccacgtc
     6841 ggcgactggg gtacgcaatt tggcatgttg gtcgcttatt tggtcgagca gcaaaaagac
     6901 aatgccgcgt tcgagctggc ggatttggag cagttttacc gcgccgccaa agtgcgcttt
     6961 gacgaagacc ccgcctttgc cgacaccgcg cgcgaatacg ttgtgaagct gcaaggcggc
     7021 gatgaaaccg ttttggcatt gtggaaacag tttgtcgata tttcgctctc gcacgcccaa
     7081 gccgtttacg acacgctggg cttgaagctg cgccccgaag acgtggcggg cgaatcgaaa
     7141 tacaacgacg atttgcagcc cgtagtcgat gatttggttc aaaaaggtct ggcagtcgaa
     7201 gacgacggcg caaaagtcgt gttcttggac gagtttaaaa acaaagaagg cgaacccgcc
     7261 gcatttatcg tacaaaaaca aggcggcggc ttcctttacg cctccaccga tttggcgtgt
     7321 ctgcgctacc gcgtcggcac gcttcatgcc gaccgcctgc tgtacgtcgt cgaccaccgt
     7381 caagccctgc actttgagca actctttacc acttcccgca aagcaggcta tctgccggaa
     7441 aacgtcggcg cggcatttgt cggcttcggc acgatgatgg gcaaagacgg caaaccgttc
     7501 aaaacacgca gcggcgacac tgtaaaactg gtcgatctgc tgaccgaagc cgtcgaacgc
     7561 gccaccgctt tggtgaaaga gaaaaatccc gaattgggcg cggacgaagc cgccaaaatc
     7621 ggcaaaaccg tcggcatcgg cgcggtcaaa tacgccgact tgagcaaaaa ccgcaccagc
     7681 gattatgtgt tcgactggga cgctatgctc tcgtttgaag gcaacaccgc cccctatctg
     7741 caatacgcct acacccgcgt gcaaagcgtg ttccgcaaaa caggcgaatg ggatgcggac
     7801 gcgccaaccg ttttgaccga accgctggaa aaacagcttg ccgccgagct gctgaaattt
     7861 gaagacgtac tgcaaagcgt ggcggacacg gcgtatccgc actacctcgc cgcctacctc
     7921 tatcaaattg cgaccctgtt cagccgcttc tacgaagcct gtccgatact caaagccgaa
     7981 ggcgcaagcc gcaacagccg cctgcaactg gcaaaactca ccggcgacac gctgaaacaa
     8041 ggcttggatt tgctgggcat cgatgtgttg gacgtaatgt aaaaccgcac cgcccgattg
     8101 cggacaacag ccccgccatc ctcatccgaa tctgaagaaa gcggcgcgat acaccgtatc
     8161 cgccgtccct cccaaaatgc gaaacaaaca aacgccaagc aagcaagcaa gcaagcaagc
     8221 aagcaagcaa gcaagcaagc aagcaagcaa gcaagcaagc aaaaaattat aacccccttc
     8281 ctgccgacgc acgcactttc cgcgcggcgc atttcccttt tcccgcccct caaacccgcc
     8341 ttttcttcag gcagggtttc agcccgcccc ctttccctgt tttcctttcc ccgacacgcg
     8401 cgcgcgaccc ctgccgcatc gtgccgcact ttcgcgcccg gacggcatcg ttccgccatc
     8461 cggttctctg ttttaaatac ccctgtttca gaaagaaatg cagatgcttc aacacacagg
     8521 acgacatata aagcgtcgcc ctatatgttg ccctgatttg gaaggggtta cgcctcccaa
     8581 ataaagcctg atcctgccgc cccgaaggac agatgtccga gtggcgaagt ttcaaccgaa
     8641 aaggaaatac gatgaatatt cacaccctgc tctccaaaca atggacgctg ccgccattcc
     8701 tgccgaaacg gctgctgctg tccctgctga tactgcttgc ccccaatgcg gtgttttggg
     8761 ttttggcact gctgaccgcc accgcccgcc cgattgtcaa tttggactac cttcccgccg
     8821 cgctgctgat cgccctgcct tggcgtttcg tcaaaattgc cggcgtattg gcattttggc
     8881 tggcggtttt gtttgacggg ctgatgatgg tgatccagct tttccctttt atggatctca
     8941 tcggcgccat caacctcgtc cccttcgtcc tgaccgcccc caccccttat cagataatga
     9001 ccgggctgtt gctgctgtat atgctggcga tgccgtttgt gttgcagaaa gccgccgcca
     9061 aaaccgactt ccggcacatt gccgtctgcg ccgccgttgt ggcggcagcc ggctatttca
     9121 ccggccattt gagttactac gaccgggggc cgatggccaa tatcttcggc gcaaacaact
     9181 tctattacgc caaaagtcag gcgatgctct acaccgtcag ccagaatgcc gactttatta
     9241 ccgccggcct ggtcgatccc gtcttcctcc ccttgggcaa tcaacagcgt gccgccacgc
     9301 atctgaacga gccgaaatct caaaaaatcc tctttatcgt cgccgaatct tgggggctgc
     9361 cggccaatcc cgaacttcaa aacgccactt ttgccaaact gctggcgcaa aaagaccgtt
     9421 tttcggtttg ggaaagcggc agttttccct tcatcggcgc gacggtcgaa ggcgaaatgc
     9481 gcgaactgtg cgcctacggc ggtttgcgcg ggttcgcact gcgccgcgcg cccgacgaaa
     9541 aatttgcccg ctgcctcccc aaccgtttga aacaagaagg ttacgccacc tttgcgatgc
     9601 acggcgcggg cagttcgctt tatgaccgct tcagctggta tccgagggcg ggctttcaag
     9661 aaatcaaaac cgccgaaaac ctgatcggta aaaaaacctg cgccattttc ggcggcgtgt
     9721 gcgacagcga gctgttcggc gaagtgtcgg catttttcaa aaaacacagc aaaggattgt
     9781 tttactggat gacgctgacc agccacgccg actatcccga atccgacatt ttcaaccaca
     9841 ggctcaaatg caccgaatac ggcctgcccg ccgaaaccga cctctgccgc aacttcagcc
     9901 tgcacaccca attcttcgac caactggcgg atttgatcca acgccccgaa atgaaaggca
     9961 cggaagtcat catcgtcggc gaccatccgc cgcccgtcgg caacctcaat gaaaccttcc
    10021 gctacctcaa acaggggcac gtcgcctggc tgcacttcaa aatcaaataa caacaatgcc
    10081 gtctgaacgc accaacagcc ttcagacggc attttgcaga cagaccgacc cttcaagccc
    10141 acttttttca tcatctccga taaattgct
//
LOCUS       DAXHPV010000060         9877 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.060, whole genome shotgun sequence.
ACCESSION   DAXHPV010000060 DAXHPV010000000
VERSION     DAXHPV010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9877)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9877)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9877
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.060"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(313..546)
                     /locus_tag="ACFM6C_001098"
     CDS             complement(313..546)
                     /locus_tag="ACFM6C_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
                     /protein_id="HFC6158562.1"
                     /translation="MKLTLMFREYCSLCHKMRDALKPFQNEYGFGLEVVDVDENPVLE
                     EKYNELVPVLLAGDEEICHWFLDEDRLKQFLER"
     gene            complement(712..912)
                     /locus_tag="ACFM6C_001099"
     CDS             complement(712..912)
                     /locus_tag="ACFM6C_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin-associated ferredoxin"
                     /protein_id="HFC6158563.1"
                     /translation="MFVCICNAVTDHQIKETIAAGATTMGDLQSQLGVASCCGCCGEL
                     AASFLTAHNAQPTVTAGINVQA"
     gene            complement(1084..1959)
                     /gene="xerD"
                     /locus_tag="ACFM6C_001100"
     CDS             complement(1084..1959)
                     /gene="xerD"
                     /locus_tag="ACFM6C_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009009 - site-specific recombinase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HFC6158564.1"
                     /translation="MEEGLIDRLLETLWLDRRLNQNTLNGYRRDLEKIARRLSQSGRT
                     LKDADEADLAAAVYVDGEQRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDK
                     NIPTLITEQQISRLLATPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRG
                     CITALGKGDKQRMVPMGQESAYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLA
                     WMIVKEYAGRAGIGHISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVA
                     NVWLQGVVKEHHSRN"
     gene            complement(2011..2451)
                     /locus_tag="ACFM6C_001101"
     CDS             complement(2011..2451)
                     /locus_tag="ACFM6C_001101"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HFC6158565.1"
                     /translation="MDVKYEFTLPSSSGADFHSAEHLPLVVYFYPKDSTPGCTTEGLD
                     FNARLEQFEALGYTVVGISRDGVKAHQNFCAKQGFRFELLSDKDETVCRLFDVIKLKK
                     LYGKESLGIERSTFVLNKDGEIAHEWRKVKVAGHAQEVLETLSR"
     gene            2772..3710
                     /locus_tag="ACFM6C_001102"
     CDS             2772..3710
                     /locus_tag="ACFM6C_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008800 - beta-lactamase activity
                     [Evidence IEA];
                     GO_process: GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HFC6158566.1"
                     /translation="MSIHTLKHLPSSLLLGLCLSLPSAHLFADNDILGQFLEQNMLTS
                     SDPIEIFAESTIHPTNTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISK
                     LMSAMVVLDANLDMNETVTITPDEIDRIKGTGSRLAIGTALTRKELLHLSLMSSENRA
                     THALGRTYPGGMGAFVAAMNRKAQSLGMYSSRFYEPTGLNFQNVSTAKDLSLMVNAAA
                     QYPQIRTNSTSNYASVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAGRSMVVKA
                     NIQNQPVTIVLLNSPTSATRVNDARKIESWMLQQRS"
     gene            3839..4132
                     /gene="hfq"
                     /locus_tag="ACFM6C_001103"
     CDS             3839..4132
                     /gene="hfq"
                     /locus_tag="ACFM6C_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HFC6158567.1"
                     /translation="MTAKGQMLQDPFLNALRKEHVPVSIYLVNGIKLQGQVESFDQYV
                     VLLRNTSVTQMVYKHAISTIVPARSVNLQHENRPQAAPTSTLVQVETVQQPAE"
     gene            4217..4783
                     /locus_tag="ACFM6C_001104"
     CDS             4217..4783
                     /locus_tag="ACFM6C_001104"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6158568.1"
                     /translation="MLLQNILPFAHCLLRKALPEGGNALDGTAGNGHDTLFLAQTAGI
                     RGKVWAFDIQPQALSRTRCRLKEARYENVQLILDGHENLKQYVSEPLNAAIFNFGWLP
                     GGDKSLTTRTETSIAALSATLSLLKENGMLIAVLYPGHENGKQEAEAIEQWAKNLPQE
                     QFAVLSYGFTNRKNNPPYLLAFEKLRQK"
     gene            4837..5211
                     /locus_tag="ACFM6C_001105"
     CDS             4837..5211
                     /locus_tag="ACFM6C_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB2 family protein"
                     /protein_id="HFC6158569.1"
                     /translation="MQYLIVKYSHQIFVTITILVFNIRVFLLWKNPEKPLVGFWKALP
                     HLNDTMLLFTGLWLMKITHFSPFNAPWLGTKILLLLAYIALGMMMMRARPRSTKFYTV
                     YLLAMCCVACIVYLAKTKVLPF"
     gene            5221..5715
                     /gene="folK"
                     /locus_tag="ACFM6C_001106"
     CDS             5221..5715
                     /gene="folK"
                     /locus_tag="ACFM6C_001106"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HFC6158570.1"
                     /translation="MNNRHFAVIALGSNLENPAQQVRAALDTLSSHPDIRLEQASSLY
                     MTAPVGYDNQPDFINAVCTVSTTLDGIALLAELNRIEADFGRERSFRNAPRTLDLDII
                     DFDGISSDDPRLTLPHPRAHERSFVIRPLAEILPDFILGKHGKVAELSKRLGNQGIRL
                     LPDK"
     gene            complement(5842..6321)
                     /locus_tag="ACFM6C_001107"
     CDS             complement(5842..6321)
                     /locus_tag="ACFM6C_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HFC6158571.1"
                     /translation="MPESIFKQISLDILKLHRDSVYSLLATSGCNCQVHEAAYVNIDG
                     KYYIALSCEPEVGEVKTGILLIEDESRNLRLSWVGSARELDCKDNAYKRALSALSRKL
                     GRCKDRLHTAVQPFLLELVPEKGRFSVGDEEVWISRNDLVRALYPVGYSMRQAVFQI"
     gene            complement(6540..7277)
                     /gene="ubiE"
                     /locus_tag="ACFM6C_001108"
     CDS             complement(6540..7277)
                     /gene="ubiE"
                     /locus_tag="ACFM6C_001108"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HFC6158572.1"
                     /translation="MGGQKTHFGFSTVNEDEKAGKVAEVFHSVAKNYDIMNDVMSAGL
                     HRVWKHFTINTAHLKKGDKVLDIAGGTGDLSRGWAKRVGKEGEVWLTDINSSMLTVGR
                     DRLLNEGMILPVSLADAEKLPFPDNYFNLVSVAFGLRNMTHKDAALKEMYRVLKPGGT
                     LLVLEFSKIYKPLEGAYDFYSFKLLPVMGRLIAKDAESYQYLAESIRMHPDQETLKQM
                     MLDAGFDSVDYHNMSAGIVALHKGVKF"
     gene            complement(7320..7688)
                     /locus_tag="ACFM6C_001109"
     CDS             complement(7320..7688)
                     /locus_tag="ACFM6C_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF971 domain-containing protein"
                     /protein_id="HFC6158573.1"
                     /translation="MNNIPVEIRLLKNRTVLVLTYGDEPKNLPAEFLRVYSPSAEVRG
                     HGVGQDVLQTGKADVQITDLQPVGQYALKISFSDGHDSGLYDWAYLHRLAYGYDAMWQ
                     EYLDKLAAAGASRFEKQSDC"
     gene            7808..9427
                     /gene="mnmC"
                     /locus_tag="ACFM6C_001110"
     CDS             7808..9427
                     /gene="mnmC"
                     /locus_tag="ACFM6C_001110"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016645 - oxidoreductase activity, acting
                     on the CH-NH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HFC6158574.1"
                     /translation="MDNLVWDGIPDIRTLDQTIRKHAHPLNLIVCLPDNQIPDFQTAQ
                     DASDAECRLKHRLDQATQCLQFDSINLIEHILPDVRFWLVPPSRTRRLHEHFHHISWQ
                     TEAIPQTESKPDKPWFALPQTSERQKPEHILVIGAGISGAATAHALASYGISVTVLEA
                     RKAAQAASGNRQGLLYAKISPHNTEQTELLLTGYGYTKRLLGHILPESETWGGNGIIH
                     LNYSRTEQQRNHELGLQKHHNHLYRSITQAEAEKIAGIPLNTPYAEPLCGLFWQHGVW
                     LNPPAFVRALLRHPLIGLHEDTPLTGISHDGEKWIASTPNGIFSATHIVYCTGAHSPC
                     LPETNLAALPLRQIRGQTGLTPSTPFSEQLRCAVSGESYISPSWHGLHCYGASFIPNS
                     SHTGWNEAEEASNRQALAHLNPALAESLFAANPNPQKYQGHAAIRCDSPDHLPLVGAL
                     GDIAAMRQTYTKLALDKNYRIDTPCPYLPNAYVNTAHGTRGLATAPICAAAVAAEILG
                     LPHPLSKRLRHALHPNRTIIRAIVRRKDLTP"
     gene            complement(9541..9658)
                     /locus_tag="ACFM6C_001111"
                     /pseudo
     CDS             complement(9541..9658)
                     /locus_tag="ACFM6C_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215773.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain protein"
BASE COUNT         2639 a         2996 c         1988 g         2254 t
ORIGIN      
        1 ctaccgatta cacaaacaca tatcatcttt acacaatcat gcttccatca acagtaaaac
       61 atgatatgat tgccaacaat aacatctcac aataaatttt ctaattttta ttgaaaaaat
      121 caataaataa gaattctccc aaccgacaaa taaaataaag aaagggttaa tatgcaacat
      181 cgaagaagac tagcaattta ccaagcatcc aaacgtgctt cctttaccgg caggtcatcc
      241 gccccgcaaa aacgtaaaga acgttaattt gaaaaaaatg ccgtctgaag tcctgcttca
      301 gacggcattt ttttaccgtt cgagaaactg tttcaacctg tcctcatcca aaaaccagtg
      361 acagatttcc tcatctcccg ccaacaaaac gggaaccagc tcattgtatt tttcttccaa
      421 aacaggattt tcatccacat cgaccacttc cagcccgaac ccgtattcat tttgaaaagg
      481 tttgagtgca tcgcgcattt tgtggcacaa gctgcaatat tcacgaaaca tcaaggtcaa
      541 tttcatccgc gtttccttat ctgtcaattt gcacacgcca aaaccttaga cgcagcagaa
      601 tcatggtcta tttgggaaaa aacaatgttt tcaaggaaga tgatactcaa gtcctgccaa
      661 aaacagcaaa aatgccgtct gaacagttca gacggcattt ccaaaaccgt tttacgcttg
      721 aacattgata cccgccgtaa ccgtcggttg cgcattgtgc gccgtcagaa acgaagcggc
      781 aagctcccca cagcagccgc agcagctcgc tacgcccaat tgcgactgca aatcgcccat
      841 tgtggtcgcg ccggcggcga tggtttcctt gatttgatgg tcggtaacgg cattgcagat
      901 gcagacaaac attttgtgct ccgtgtgttc tcaaactatc gtaccgatag cggcttttat
      961 tatcgtatgc aaatataaat aaaaacggtt cgcattgcaa ggtcggcata cacggtttgt
     1021 cttggtaatt ttttatcaag ttttcatttc cgattgattt cttattaaac cgaagcagaa
     1081 gcctcagttt cgggaatggt gttccttcac tacaccctgc aaccatacat tggcaacatg
     1141 ggtgtaaatc tgcgtcgtat tcaaatcggc atgtcccaac atatcctgaa ccacgcgcaa
     1201 atccaatccg tgctgcacca agtgcgtggc aaaggcgtgg cgcaggctgt gcgggctgat
     1261 gtgcccgatg cccgccctac ctgcatattc tttgacaatc atccatgcca actgacgaga
     1321 aatgcccgtc tttttctgac tgacaaacaa tgcgtcgcaa ttcctgcctt tcagcagaag
     1381 tgggcgtgcc tccgtataat agcgttccac ccaatacgcc gactcctgcc ccatcgggac
     1441 catcctctgc ttatcgccct tgcccagcgc ggtaatacag cccctgtcca aatccacatt
     1501 gccgaagttc agcccgaccg cctcgctgac gcgcaagccg gtcgcgtaca tcaattcgag
     1561 cagtgccttg tcccgcaaac cgtgtggcgt atcagtatcc ggagtggcaa gcagtcggga
     1621 aatctgctgc tcggtgatca gggtcggaat attcttgtcg attttgggcg gtttcagcaa
     1681 acgggtggga ttgtccgtcc ttatgccttc acgctccatc catatataca ggcgtttgca
     1741 cgccgataat gcgcgcgcct gcgaactccg ttgctctccg tcaacataaa ccgccgccgc
     1801 caaatccgct tcgtccgcat ccttcagcgt tctgcccgat tgggacaggc ggcgggcgat
     1861 tttttccaaa tcgcgccggt aaccgtttaa agtattctga ttgagccgcc tgtccaacca
     1921 cagcgtttca agcagcctgt cgatcaaacc ttcttccata ccgttccaaa caaatgccgt
     1981 ctgaatcttc ttcaggcggc atggttcaca ttatcgggaa agcgtttcca acacttcctg
     2041 tgcatgaccc gccactttga ctttccgcca ttcatgggcg atttctccat ccttattcaa
     2101 gacgaacgta ctgcgctcga tacctaacga ctctttcccg tacagtttct tcaatttgat
     2161 gacatcaaac aggcggcaca ctgtttcatc cttgtcgctc aacagctcga accggaaacc
     2221 ctgcttggcg caaaaattct gatgcgcctt tacgccgtcg cgggaaatac cgaccacggt
     2281 ataacccaat gcctcaaact gttccaaacg cgcattgaaa tccaagcctt ccgtcgtaca
     2341 gccaggcgta ctgtctttcg gataaaaata cacgaccaaa ggcagatgtt ctgccgaatg
     2401 aaaatccgca ccgctgctcg aaggcagggt aaattcatat ttcacatcca tagtcctact
     2461 cccgatattc ccattattca aaacggcacg cagacgcacc gccgcaattg ccaaaccaac
     2521 cccgattcta ccgccccaaa ggacaaggat tcaaccgccg gaaacatcca aaccgacaca
     2581 cgacggcatg aaaaatatcc atgtcaaacc acaaaatatg ttccgattta aaaacagaat
     2641 gttataaaac ccaatcccca aaacacaaca agaccgcccg cctacgggca gtctcctgtc
     2701 agacgacata ctttacagat ggctgttttt tcaacaaaat aacgccaata ctcaaaaata
     2761 tggaatcaaa aatgtccatc catactctga aacacctgcc ctcatcgctg ctgctcggtc
     2821 tctgcctttc cctgccgtca gcccaccttt ttgccgacaa cgacatttta gggcaatttt
     2881 tagaacagaa catgcttacc tcctccgatc cgatagaaat attcgccgaa agcacgatac
     2941 accccaccaa cacccaagcc attacaggcg gtctgattct ctcctcacag tctgccctgg
     3001 tcgtcaacaa caaaaccgga cagatactgt atcagaaaaa cgccgacagg attatgccca
     3061 tcgcctccat ttccaaactg atgagcgcga tggtcgtttt ggatgcaaac ttggacatga
     3121 acgaaaccgt taccattacg cccgacgaaa tcgaccgcat caaagggacc ggcagccgtc
     3181 ttgccatagg tacggcactt acacgcaaag aactgctgca cctgagcctg atgagcagcg
     3241 aaaaccgcgc cacccatgca ttgggcagaa cctaccccgg cggcatgggc gcatttgtcg
     3301 ccgctatgaa ccgcaaagcc caaagcctgg gcatgtacag cagccgcttt tacgaaccga
     3361 ccggactcaa cttccaaaac gtttccaccg ccaaagacct gagccttatg gtcaacgccg
     3421 ccgcccaata tccgcaaatc cgcaccaact cgacttccaa ctacgcctcg gtacagacca
     3481 aaaacgggca gcagaactac aaaaactcca atgcgctggt cagggaaggc atgtggaaca
     3541 tcgaattgca gaaaaccggc tacatacgcg aagcaggcag gtctatggtt gtcaaagcca
     3601 acattcaaaa tcaacccgtt accatcgtat tgctgaactc gcccacatcc gccacacgcg
     3661 tcaacgacgc ccgcaaaatc gaatcgtgga tgctgcagca acgctcctga catacaaatg
     3721 cccggcggaa aaccgcccaa acacaaaaaa aattggtaat ttttcctatt caaggctaca
     3781 attcgacacg cacagggcgt ctgcccgatt tcacaatcat aatagcggag ttaaaaatat
     3841 gacagctaaa ggacaaatgt tgcaagatcc cttcctgaac gccctgcgta aagagcatgt
     3901 tccggtttcg atttacttag ttaacggtat caaattgcaa ggtcaggttg agtctttcga
     3961 tcaatacgtt gttctcctga gaaacacttc cgtcacccaa atggtttaca aacacgccat
     4021 ttccaccatc gtaccggcac gctccgtcaa cctacaacat gaaaacagac cccaagccgc
     4081 accgacttcg accctcgtcc aagtggaaac cgtccagcag cctgccgaat aatccgcacg
     4141 aagcatgacg tgtcatatct ttcaatacct taccggacaa cggtaaggta tttttatttt
     4201 cagacagcat ttaaaaatgt tattgcaaaa catccttcca ttcgcccatt gccttttgcg
     4261 gaaggcactt cccgaaggtg gcaatgcttt ggacggcacc gccggcaacg gacacgacac
     4321 ccttttcctc gcacaaaccg caggcatccg ggggaaagtg tgggcattcg acatccagcc
     4381 gcaagccctg agccgcactc gatgccgtct gaaagaagcg agatacgaga atgtgcaact
     4441 catcttagac ggacacgaaa acctgaaaca atatgtttca gaaccactaa atgccgccat
     4501 tttcaatttc ggctggctgc ccggcgggga caaaagcctt accacccgca cggaaaccag
     4561 cattgccgcc ctttctgcca ccttatccct actgaaagaa aacggtatgc ttattgccgt
     4621 cctctatccg ggacacgaaa acggcaaaca ggaggcagaa gcaatcgaac aatgggcaaa
     4681 aaacctgcct caagaacagt ttgccgtttt gagttacggc tttaccaacc ggaaaaacaa
     4741 cccgccctat ctgttggcat ttgaaaagtt acgtcaaaaa taaatgtttg cggtaaaata
     4801 agccgattct aacccttatt ttgatacgag ccgaccatgc aatatctgat tgtcaaatac
     4861 agccatcaaa tcttcgttac catcaccatt ttggtattca acatccgtgt tttcctactt
     4921 tggaaaaatc cagaaaagcc cttggtcggc ttttggaagg cactgcccca ccttaacgac
     4981 accatgctgc tgtttacggg attgtggctg atgaaaatta cccatttctc cccgttcaac
     5041 gcgccttggc tcggtacaaa aatcctgctt ctgctcgcct atatcgcatt gggtatgatg
     5101 atgatgcgcg cccgtccgcg ttcgaccaag ttctacactg tttacctgct cgccatgtgt
     5161 tgcgtcgcct gcatcgttta ccttgccaaa accaaagtcc tgcctttctg aaacaccgtt
     5221 atgaacaaca gacattttgc cgtcatcgcc ctgggcagta atcttgaaaa ccctgcccaa
     5281 caggtacgcg ccgcattgga cacgctgtcg tcccatcctg acatccggct tgaacaggct
     5341 tcctcactgt atatgaccgc acccgtcggt tacgacaatc agcccgattt catcaatgcc
     5401 gtctgcaccg tttccaccac tctggacggc attgccctgc ttgccgaact caaccgtatc
     5461 gaagccgatt tcggacgcga acgcagcttc cgcaacgcgc cgcgcacatt ggatttggac
     5521 attatcgact ttgacggcat ctccagcgac gacccccgac tcaccctgcc gcatccgcgc
     5581 gcgcacgaac gcagtttcgt catacgccct ttggcagaaa tcctccctga ttttattttg
     5641 ggaaaacacg gaaaggttgc cgaattgtca aaacggctgg gcaatcaagg catccgtctt
     5701 ttaccggata agtaattccg cacgcggatg ccgtctgaat gccggtttca gacggcattt
     5761 ttcctttgcc gccaacacgc gtgcaaaaaa atcgcccctt ggaaaagggg cgcaaaagga
     5821 acacaaacca ctaccaaaac tttaaatctg aaacactgcc tgccgcatac tgtatccgac
     5881 aggatataaa gccctcacta aatcgtttcg agaaatccaa acttcttcat cgccgacaga
     5941 aaatctgcct ttctccggca ccagctccaa caaaaacggt tgaaccgccg tatgcagcct
     6001 gtccttacac cgccccagct ttctggacaa cgcggacagg gcgcgtttgt aggcattatc
     6061 cttgcagtca agctcccgcg cactgccgac ccagctcaaa cgaaggttgc ggctttcatc
     6121 ctcaatcagc aaaatgcctg ttttgacttc ccccacctcg ggctcgcatg aaagcgcaat
     6181 ataatatttg ccgtcgatgt tgacatacgc cgcttcatgc acctgacagt tgcagccgga
     6241 agtggcaagc agcgaataaa cagaatcccg atgcagtttc aaaatatcaa gggaaatctg
     6301 tttgaaaata ctttccggca ttttccctcc tttcgtctgc tgcgttgttt actggattga
     6361 ctgcattata cagacatctc ccaatcttgc aaatgataat tgttcctatt ttttaaaaag
     6421 cttataaatt attgatatat atgtaaatta atttttaaga tttaaaacct ttgtctcaag
     6481 aaacacaaaa atgccgtctg aaacgtgttc agacggcatt ggctgcacag gcagtccgtt
     6541 taaaatttca cgcccttatg cagcgcgacg atgcccgcac tcatattgtg ataatccacg
     6601 ctgtcaaagc ctgcatccag catcatctgt ttcaaagttt cctgatcggg gtgcatacgg
     6661 atggattcgg caagatattg ataactctcc gcatctttgg caatcagcct gcccatgacc
     6721 ggcagcagct tgaacgaata gaaatcatac gcgccttcca aaggtttgta gattttggaa
     6781 aactccaaca ccagcaacgt gccgcccggt ttcaaaacac ggtacatctc tttcagcgcg
     6841 gcatctttat gcgtcatgtt ccgcaagccg aacgccacgg aaaccaagtt gaaataattg
     6901 tcggggaaag gcagtttttc cgcatcggca agcgatacgg gcaaaatcat gccttcgttc
     6961 aacagacggt cgcgcccgac ggtcagcata gaggaattaa tatcggtcag ccaaacctcg
     7021 ccttccttgc cgacccgttt cgcccaaccg cgcgacaaat cgcccgtacc gcccgcaatg
     7081 tccaacactt tatcgccttt tttcaggtgc gccgtgttga tggtgaaatg cttccacacc
     7141 ctgtgcagcc ctgccgacat cacatcgttc ataatgtcgt agtttttggc gacggagtgg
     7201 aacacttccg ccacttttcc ggctttctca tcttcgttga ccgtactgaa tccgaaatgc
     7261 gttttttgtc cgcccatctt ctgaccacct ccctgatgcc gtcctccggc atcccaaact
     7321 taacaatctg attgcttttc aaaacgcgac gcaccagccg ccgccaattt gtccaaatat
     7381 tcctgccaca tcgcatcgta tccgtatgcc agtctgtgca gatacgccca atcgtaaaga
     7441 ccgctgtcgt gcccgtccga aaaactgatt ttcagcgcat actgtccgac aggctgcaaa
     7501 tccgtgattt ggacatccgc cttgccggtc tgcaaaacat cctgtcccac gccgtgtccg
     7561 cgcacttccg cactcggcga atagacgcgt aaaaattcgg caggcagatt tttaggttcg
     7621 tccccataag tcaaaaccaa cacggtacgg tttttcaaca aacggatttc aacaggaata
     7681 ttattcaaaa aacacctcgg ttcggcatac aatatccggc aggcgcaggc gtgccttcaa
     7741 acggcgcgta ttttaacagc tttatcccga taccgatatt caaacccaca tttcagacgg
     7801 cattgatatg gacaatctcg tatgggacgg cattcccgac atccgcacac tcgaccaaac
     7861 catccgcaaa cacgcacacc cgctcaacct gattgtctgc ctccccgata atcagattcc
     7921 cgattttcaa accgcacaag atgcttcgga cgcggaatgc cgtctgaagc accgtttgga
     7981 tcaggcaacg cagtgcctcc agttcgacag catcaacctc atcgaacaca tcctgcccga
     8041 tgtccgcttc tggctggttc ccccttcacg cacccgccgc ctgcacgaac acttccacca
     8101 catttcctgg cagaccgaag ccatcccgca aaccgaaagt aagcccgaca aaccctggtt
     8161 tgcacttcca caaacatccg aacggcaaaa accggaacac atcctcgtta tcggagcggg
     8221 catatccggc gcggcaaccg cccacgcctt agcatcatac ggcatttccg ttaccgtatt
     8281 ggaagcccga aaagccgccc aagccgccag cggcaaccgc caagggctgc tctacgccaa
     8341 aatctcgcca cacaataccg aacaaaccga acttttgctc accggctacg gctacaccaa
     8401 acgcctgctc ggacacatcc tgcccgaatc cgaaacctgg ggcggcaacg gcatcatcca
     8461 cctcaattac agccgcaccg aacaacaacg caatcacgaa ttgggtttgc aaaaacacca
     8521 taaccacctc taccgcagca tcacgcaggc agaagccgaa aaaatcgccg gtatcccgct
     8581 gaacacgccc tacgccgaac cattatgcgg actgttttgg cagcacggcg tatggctcaa
     8641 tccacccgca ttcgtccgcg ccctcctccg ccatccgctg attggactac acgaagacac
     8701 accgttaacc ggtatttccc acgacggaga aaagtggatt gcaagcacgc caaacggcat
     8761 cttttctgcc acacacatcg tctactgcac cggcgcgcac agcccctgcc tgcccgaaac
     8821 caacctcgcc gccctgcccc tcaggcaaat acgcggacaa accggcctca caccgtccac
     8881 cccgttttcc gaacaactgc gttgcgccgt ttcaggcgaa agctacatca gcccgtcgtg
     8941 gcacggactg cactgctacg gcgcgagttt tattcccaac agcagccata ccggatggaa
     9001 cgaagccgaa gaagcctcaa accgccaagc attggcacac cttaaccccg cccttgccga
     9061 atcattgttt gccgccaacc caaaccccca aaaataccaa gggcacgccg ccatacgctg
     9121 cgacagcccc gaccaccttc ccctagtcgg cgcactcggc gacattgccg ccatgcggca
     9181 gacctacacc aaactcgcgc tggacaaaaa ctaccgcatc gacaccccat gcccatacct
     9241 gcctaatgcc tacgtcaaca ccgcccacgg cacacgcggg cttgccaccg cccccatctg
     9301 cgccgccgcc gttgcagccg aaatcctagg cttgccccat cccctctcaa aacgcctgcg
     9361 ccacgcccta caccccaacc gcaccatcat ccgcgccatc gtcagaagga aggatctaac
     9421 cccttaagcc tttgccgcat gccgtcccga ccacagaaaa tcatattcaa ataaacatac
     9481 caatcctgac ggtaaaatat cgaaaacacc cataacgttt tcttcccaaa ataaggagta
     9541 aggaatgcct aacaaattgc ctttgctgtc caagatgaat gttccgtaac attcgaagac
     9601 ttccttaacc ctgccagccg tttcggtttc tgtaccccct gttagataag gaaggaatga
     9661 aaaagccctg ttgattgtat gaagtaaagg gcgttaattt ttgttaatct tcccttctca
     9721 ggaactcaat atataaggat gttaattttt atttcccttc tcgaggactc aatatagtgg
     9781 attaacaaaa accagtacgg cgttgcctcg ccttgccgta ctatttgtac tgtctgcggc
     9841 ttcatcgcct tgtcctgatt tttgttaatc cactata
//
LOCUS       DAXHPV010000061         9877 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.061, whole genome shotgun sequence.
ACCESSION   DAXHPV010000061 DAXHPV010000000
VERSION     DAXHPV010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9877)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9877)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9877
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.061"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            205..1254
                     /locus_tag="ACFM6C_001112"
     CDS             205..1254
                     /locus_tag="ACFM6C_001112"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HFC6158575.1"
                     /translation="MSKQPTSKRQWRDGAAPSAKKTAKPFKSKARPKDETDKTASQPY
                     GQKASDGIKPQNLPKQRAAKAKKLVVRNPNQKIMEHARDLKERRSDLSRMEPERLQKV
                     LAASGVGSRREMEEWINNGWVTVNGKTAQLGDKVTPDDHVTVKGSIIKLKWADRLPRI
                     ILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTSGELVQ
                     RFAHPSFEVEREYAVRVLGGLTGEQMRVLTEEGVMLEDGLAKVERIREQGGEGANKWY
                     NVVIKEGRNREVRRIFESQGLTVSRLVRIGFGPIGLPNRLKRGQFYELNPAEVANIIK
                     WADMLLPGERRRKKA"
     gene            complement(1323..2864)
                     /locus_tag="ACFM6C_001113"
     CDS             complement(1323..2864)
                     /locus_tag="ACFM6C_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OFA family MFS transporter"
                     /protein_id="HFC6158576.1"
                     /translation="MKFLDREASIAKPGFNRWLVPPAALAVHLAIGQIYAYSVFNAPL
                     TKLIGITESAAGDWKLTTVGWIFSIALAMLGASAALFGTWMERVGPRKAIFAAACCFS
                     LGFFVSAFGVRTHNLFLLYLGNGVIGGVGLGLGYIGPVSTLMKWFPDKPGMATGLAIM
                     GFGGGAMLASPLSVSLMNAFSNAASVGVAETFAVLGLLYLALMMFGAFTIRVPADGWK
                     PEGYTAPKTQNKLVSSNHVNVSQAMKTPQFWLLFWVLCLNVTAGIGVLGQASVMIQEL
                     FSETSIGRQAAVGAGAAAGFVSLLSLFNMGGRFLWSSVSDKIGRKNTYTIFFVLGSLL
                     YFAVPSIGEGGSKALFIIGFCVIISMYGGGFAAIPAYLKDLFGTYQVGAIHGRILLAW
                     STAAVIGPVLVNYIRQSQIDSGIPAAQAYSVTMYIMACLLIIGLLCNLAVKSVHEKHH
                     EKDIKTAAHSGNPDDETAISDAYLVGEKVSGGGISVWWRWALAVIPLAYGVVMVFVKA
                     LDLFS"
     gene            complement(3475..4830)
                     /gene="xseA"
                     /locus_tag="ACFM6C_001114"
     CDS             complement(3475..4830)
                     /gene="xseA"
                     /locus_tag="ACFM6C_001114"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HFC6158577.1"
                     /translation="MSDFFHSDVLSVSELNAFAKSLLENHLAGLWIAGEVSNLTRAAS
                     GHYYFSLKDSRAQVRCAMFKGAAARLAKPLKEGDHIEVSGKISIYEARGEFQITVNEV
                     RLKGLGQLYEAYERLKAQLQAEGAFAAERKKPLPTRPQCIGIVTSLAAAALRDVVTTL
                     KRRAPEIPVIVYPTPVQGAGSELQIAQAIKTASQRAECDVLIVCRGGGSIEDLWAFNE
                     EPVVRAIEACTVPVVSGVGHETDFTLADFVADVRAPTPTGAAELVSPNRQESLHRLAQ
                     AQGRLKTVLEQRYFDASQKLDWLARQIRHPRQKLDEQRASIGKLAQTLSYSMKQNLRA
                     HTARFERQTQALQHYRPDVSVCKNNIVRLQTALPAAFSQLLTHRRQSLTAQAALLEAV
                     SPQHILERGFSVVKNTRGQVIRNADVLKQGQKLHITFADGETDVRVSKEQGQQDLFDC
                     I"
     gene            5027..5848
                     /gene="nadE"
                     /locus_tag="ACFM6C_001115"
     CDS             5027..5848
                     /gene="nadE"
                     /locus_tag="ACFM6C_001115"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008795 - NAD+ synthase activity [Evidence
                     IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) synthase"
                     /protein_id="HFC6158578.1"
                     /translation="MMRIFSTGGKMDTQAVITHIVRWLDEYAARANAKGFVVGVSGGI
                     DSAVVSALAARTGRTTLLLDMPIRQHPDQLERARLHIRNLQRQYANVSAQTVDLTDTF
                     QTFEQTVGVHQTAFDNQPLSLANARSRLRMLTLYYYGQIHGLLVTGTGNKIEDFGVGF
                     FTKYGDGGVDISPIADLTKTQVYRLAEALGVDEAIQKAPPTDGLWDTERTDEEQMGAS
                     YPELEWAMGMYGTRKPEDFEGRQREVLEIYTRLHRAMQHKINPIPVCRIPPELLG"
     gene            complement(5918..6391)
                     /gene="dnrN"
                     /locus_tag="ACFM6C_001116"
     CDS             complement(5918..6391)
                     /gene="dnrN"
                     /locus_tag="ACFM6C_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster repair protein DnrN"
                     /protein_id="HFC6158579.1"
                     /translation="MTDFSVWETAPFGATVDHILQRYHNVHRAQFEELVPLAQKVAQV
                     HADTFPAEIAGLLAYMQNELLMHMMKEERMLFPMINQGVGRGAAMPIGVMMHEHEEHD
                     RAIARLKELTDNFQPPEGACGSWTRLYALAKEMVEDLNDHIHLENDILFARVLDS"
     gene            6689..7021
                     /gene="trxA"
                     /locus_tag="ACFM6C_001117"
     CDS             6689..7021
                     /gene="trxA"
                     /locus_tag="ACFM6C_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_process: GO:0006662 - glycerol ether metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxA"
                     /protein_id="HFC6158580.1"
                     /translation="MSSELIVHTGDAAFEKDVLNADIPVLLDFWAPWCGPCKMIAPIL
                     DDIAAEFEGRLKVVKINIDDNEATPSRFGVRGIPTLMVFKNGEVVATKVGALAKGQLT
                     AFVEASIA"
     gene            complement(7074..8021)
                     /locus_tag="ACFM6C_001118"
     CDS             complement(7074..8021)
                     /locus_tag="ACFM6C_001118"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6158581.1"
                     /translation="MTDITPFANRLGKNIKHLMKWAKRNGIEAWRIYDRDIPQFPFAA
                     DVYGDRIHLQEYDTGWLMRPEEYEAWLAEVLEAVAFVTGFAPEQIRLKRRERQKGLQQ
                     YEKTGKAGDDFVITENGRKFWVNLDKYLDTGLFLDHRNTRKKVGETAAGKRFLNLFSY
                     TGSFTVYAATGGAASSETVDLSNTYLDWARRNFELNGIDTERHKIVRADVFQYLQTAY
                     GEGRRFDLIVMDPPSFSNSKKMSDILDIQRDHKKLIDGAVKLLASDGILYFSNNLRSF
                     VLDDLVSEQYAVKDISKQSVPEDFRNKKIHRCWEIRHKS"
     gene            8349..9737
                     /locus_tag="ACFM6C_001119"
     CDS             8349..9737
                     /locus_tag="ACFM6C_001119"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HFC6158582.1"
                     /translation="MSIKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIM
                     ASAQTGSGKTAAFLLPTLQRLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNM
                     RWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEAD
                     RMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQG
                     KIEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCL
                     HGDMPQGWRNRTLMNLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRI
                     GRTGRAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRKRKSAGGKPKG
                     KGGWGDRKSGGWRGDHKPGKEGFGGKTRGEGFKKEGFKKDGFKKTGEGFKGKRKAGDS
                     FAGKSERRYKDR"
BASE COUNT         2416 a         2729 c         2592 g         2140 t
ORIGIN      
        1 ttgaaagatt ctacccccgc acgcaaaccg atttcaaccg ttgcacaaac tttgcctcgc
       61 cacaagccgc agcgacgatt tcatccgcaa aaccgccgca tcaggtacaa tatcgaaccg
      121 tccgactgag gacggcattt tatcaacccg tcctgccgca cacgccgcag aagaaccgcc
      181 ttatcaggcg agttaggaaa aatgatgtcc aaacagccca ccagcaaacg ccaatggcgc
      241 gacggcgcag ccccgtctgc caagaaaacc gccaaaccgt tcaaaagcaa agcccgtccc
      301 aaagacgaaa cggacaaaac cgcatcccaa ccttacggac aaaaagcttc agacggcatc
      361 aaacctcaaa acctccccaa acagcgcgcc gccaaagcca aaaaactcgt cgtccgcaat
      421 cccaaccaaa aaattatgga acacgcgcgc gatttaaaag aacgccgcag cgacctatcg
      481 cgcatggaac ccgaacgcct gcaaaaagtg cttgccgcgt ccggcgtcgg ctcgcgccgc
      541 gaaatggaag aatggatcaa caacggctgg gtaacggtca acggcaaaac cgctcaactg
      601 ggcgacaaag tcacccccga cgaccacgtt accgtcaaag gcagcatcat caaactcaaa
      661 tgggccgacc gcctgccgcg catcatccta tattacaaac aagaaggcga aatcgtttcc
      721 cgcgacgacc cgcaaggccg cgtcagcata ttcgaccgcc tgccgcaggc cgccagcagc
      781 cgctgggtcg ccatcggacg cttggacatc aacaccagcg gacttctgat tctcaccacc
      841 tccggcgaac tcgtccaacg tttcgcccac cccagcttcg aagtcgaacg cgaatacgcc
      901 gtgcgcgtac tgggcgggct gaccggcgaa caaatgcgcg tcctcaccga agaaggcgtg
      961 atgctcgaag acggcttggc aaaagtcgaa cgcatccgcg aacaaggcgg cgaaggcgcg
     1021 aacaaatggt acaacgtcgt gattaaagaa ggccgcaacc gcgaagtgcg ccgcattttt
     1081 gaaagccaag gactcaccgt cagccgcctc gtgcgcatcg gcttcggtcc catcggactg
     1141 cccaaccgcc tcaaacgcgg acagttctac gaactcaacc ccgccgaagt cgccaacatc
     1201 atcaaatggg cggacatgct gctgccgggc gaacgccgcc gcaaaaaagc ctaaacccgc
     1261 caaaacacaa aaatgccgtc tgaaacatct gctgtttcag acggcatttt attcgggcgt
     1321 tttcaggaga aaaggtcgag tgctttgaca aagaccatca ccacgccgta ggcgagcggt
     1381 atgacggcca atgcccaacg ccaccagacc gatatgccgc cgccggaaac tttttcgccc
     1441 acaaggtaag cgtcggatat ggcggtttcg tcgtcggggt tgccgctgtg tgcggcggtt
     1501 ttgatgtctt tttcgtggtg tttttcgtgt acggatttga cggcgaggtt gcacaacaaa
     1561 ccgataatca gcaggcacgc catgatgtac atggttacgc tgtatgcctg tgccgccggt
     1621 atgccgctgt cgatttggct ttggcgtatg taattgacca gtaccgggcc gatgacggcg
     1681 gcggttgacc aggccagcag gatgcgtccg tgaatcgcgc cgacctgata ggtgccgaac
     1741 aggtctttca ggtaggcggg aatggcggca aatccgccgc cgtacatgga aataatcacg
     1801 caaaagccga tgatgaacag ggctttgctg ccgccctcgc cgatggaggg aacggcgaaa
     1861 tacagcagcg agccgagtac gaagaagatg gtgtaggtgt ttttgcgtcc gattttgtcg
     1921 gaaacgctcg accacaaaaa gcgtccgccc atgttaaaca ggctcaggag gctgacgaag
     1981 cctgccgccg cacctgcgcc gactgctgcc tgcctgccta tggaggtttc ggaaaagagt
     2041 tcctgaatca tcacggatgc ctgacccaat acgccgatgc cggcggttac gttcaggcac
     2101 aatacccaga acaacagcca aaactgcggc gttttcatgg cttgggacac gttgacatga
     2161 ttactgctga ccagcttgtt ttgcgttttc ggcgcggtat agccttcagg tttccagccg
     2221 tcggcaggta cgcggatggt aaacgcgccg aacatcatca gtgcgaggta aagcaggccc
     2281 aatacggcaa aggtttcggc aaccccgacc gaagcggcgt ttgaaaaggc gttcatcagt
     2341 gatacggaaa gcggagaggc cagcattgcg ccgccgccga aacccataat cgccaaaccg
     2401 gtcgccatac ccggcttgtc gggaaaccat ttcatcagtg tggaaaccgg cccgatgtag
     2461 cctaagccta agcctacgcc gccgatgacg ccgttgccca aatagagcag gaagaggttg
     2521 tgcgtacgca cgccgaatgc ggatacgaag aagcccaggc tgaaacagca ggcggcggca
     2581 aatatggctt tgcgcggacc tacccgttcc atccatgtgc cgaacagggc agccgacgcg
     2641 cccagcatcg cgagtgcgat actaaaaatc caacctacgg tcgtcagctt ccaatctccg
     2701 gccgccgatt cggttatgcc gataagtttg gtcagcggcg cgttgaatac ggaataggcg
     2761 taaatctgcc cgatggcaag gtgcaccgcc aatgctgcgg gcggtacgag ccaacggttg
     2821 aaacccggct tggcaatgct tgcctcacgg tctaaaaact tcataacatc ctctttctgt
     2881 cagttgaaaa ataaaatttc atttgctcaa tggaaactta ttgaaaatta taaaaaaata
     2941 tcgggtcagg tttttatccg ccccaagatg cgccgtctga aacatttcgg gtgtacggaa
     3001 aggtttctgt tttttccgac aaattcctgc ggcttttcgc ttccggattc ccgcttttgc
     3061 gggaatgacg aattaaagat tatcttaagg tcaagggact ggattcccgc ttttgcggga
     3121 atgacggcgg cgggttgctg ttttttattt ataaatttct gtaactttgg atttcagcca
     3181 tcttcaataa attatcgaaa cgtatcaatc gtcattcccg cgcaggcggg aatccatcca
     3241 gttcgttcga tttcggtttt ttaagtttcg agtaacttct gactcgtcat tcccgcgtag
     3301 gcgggaatcc ggttttttga gtttcagtca tttctaatac attcccacca cttttcgctt
     3361 ccggactccc gctttttcag gaatgacgaa ttaaagatta tcttaaggtc aagggactgg
     3421 actcccgctt ttgcgggaat gacggcggag ggggagcggt ttttccgatt gggtttaaat
     3481 gcaatcgaac aaatcctgct gcccttgttc tttgcttacg cgcacgtcgg tttcgccgtc
     3541 ggcgaaggta atgtgcagct tctgcccctg cttcaaaaca tcggcgttgc ggatgacttg
     3601 tccgcgtgtg tttttgacga cggaaaagcc gcgctccaga atgtgctgcg gcgaaacggc
     3661 ttcgagcaat gcggcttggg cggtcaggct ttggcggcgg tgggtaagca gttggctgaa
     3721 ggcggcgggc aatgccgtct gaaggcggac gatgttgttt ttgcaaacgg aaacatcagg
     3781 acggtaatgt tgcagggctt gggtttggcg ttcaaaacgg gcggtgtggg cacggaggtt
     3841 ttgcttcata gagtaagaca gcgtttgcgc cagcttgccg attgaagcgc gctgctcatc
     3901 aagtttttgg cgcggatgac ggatttgccg cgcaagccag tcgagttttt ggctggcatc
     3961 gaaatagcgt tgttccaaaa cggttttcag acggccttgc gcctgagcga gacgatgtag
     4021 cgattcttgg cggttggggc tgaccagctc cgccgcaccg gtcggcgtgg gcgcgcgcac
     4081 gtcggcgaca aaatcggcaa gcgtaaaatc ggtttcgtgt cccacgccac tgacgacggg
     4141 aaccgtgcag gcttcgattg cgcgcacgac cggttcttcg ttaaacgccc acaagtcttc
     4201 aatgctgccg ccgccgcgac agacaatcaa cacgtcgcat tcggcgcgtt gcgaggcggt
     4261 tttaatcgct tgggcaattt gtaactcgct gcctgcgcct tgaacaggtg tcggataaac
     4321 gataacggga atttcgggcg cgcggcgttt caaggtggta acgacatcgc gcaatgccgc
     4381 tgctgccagg ctggtgacga tgccgataca ttgcggacgg gtaggcaacg gctttttgcg
     4441 ttccgccgca aacgcgcctt ccgcctgcaa ctgtgccttc aaccgctcgt aggcttcgta
     4501 aagctgcccc aaacctttga gccgcacctc attcacggta atttgaaatt cgccccgcgc
     4561 ctcgtaaata ctgatttttc ctgatacttc gatatggtcg ccttctttca aaggcttcgc
     4621 caaacgcgcc gccgcacctt tgaacatcgc gcaacgcacc tgcgcgcggc tgtctttgag
     4681 cgagaaataa taatgtccgc tggcggcacg ggtcaggttg gacacttcgc ccgcaatcca
     4741 caggccggca aggtggtttt ccaaaagact tttggcaaat gcgttcaact cggaaacgga
     4801 caacacgtca gaatgaaaaa aatcagacat agaatcaatc aaataataaa aaatatgaat
     4861 atgttttgaa gcctaaggcg gtattagtcc gcctaaattg tcaacaatat tataacacgc
     4921 gccatcttgc cgcccgcctt ttcccgtatg acttttttaa gcggggaatg ggaaaaatat
     4981 tcatcaaccc gccctcaatc tattcaaatt acaccgccga caagctatga tgcggatatt
     5041 ttcgacagga ggaaaaatgg atacgcaggc agttatcaca catattgtcc gatggttgga
     5101 cgaatacgcc gcccgggcaa atgcaaaagg gtttgtcgtg ggcgtttccg gcggcatcga
     5161 ttccgccgtc gtctccgcac tcgccgcccg caccggccgc accacgctgc ttctggatat
     5221 gccgatacgc caacaccccg accagcttga gcgggcaagg ctgcacatcc gcaatctgca
     5281 acggcaatat gccaatgtaa gcgcacaaac ggtcgatctg accgacacct tccagacctt
     5341 tgaacaaacc gtcggcgttc atcagacggc atttgacaat cagccgcttt ccctcgccaa
     5401 cgccagaagc cgcctgcgta tgctgaccct gtactactac gggcagatac acggactact
     5461 ggttacgggg acaggtaaca aaattgaaga tttcggtgta ggatttttta ccaaatacgg
     5521 cgacggcggc gtggacatca gcccgattgc cgacctgacc aaaacccagg tttaccggct
     5581 tgccgaagca ttgggcgtgg acgaggcgat tcaaaaagcc ccgccgaccg acggcctgtg
     5641 ggatacggaa cgcaccgacg aggaacagat gggcgcgagc tatcccgaac tggagtgggc
     5701 aatgggcatg tacggcacgc gcaaacccga agattttgaa gggcggcagc gcgaagttct
     5761 ggaaatctat acgcggctgc accgcgcgat gcagcacaaa atcaacccga ttcccgtgtg
     5821 ccgcattccg cccgaattgt tgggctgaaa cgtggaaatg ccgtctgaaa cggaaaaccg
     5881 tatttcagac ggcatggaaa tatccgactc ctatccctta agaatcgagt acgcgggcaa
     5941 acaaaatatc gttttccaaa tgaatgtggt cgttcaaatc ctccaccatt tctttcgcca
     6001 gcgcgtaaag ccgcgtccag cttccgcaag ccccttctgg cggttggaaa ttgtcggtca
     6061 gctctttgag ccgtgcgatg gcgcggtcgt gttcttcatg ttcgtgcatc atcacgccga
     6121 tgggcatcgc cgcaccgcgt ccgacaccct gattaatcat cggaaacagc atccgctcct
     6181 ccttcatcat atgcatcagc agttcgttct gcatataggc aagcagcccg gcaatttctg
     6241 ccggaaaggt atcggcatgg acttgggcca ctttctgcgc cagcggcacc aattcttcaa
     6301 attgtgcgcg gtggacattg tggtagcgtt gcaggatatg atcgacggtt gcaccaaagg
     6361 gggcggtctc ccaaacggaa aaatcagtca tcgcagtgtt ccttttacag ggtttcgggt
     6421 ttggttttga acattcatac tttaagaatc aattcaaacg gagcatacac cgcccgcgcg
     6481 cttctgtaca gcctcaaacg tattccttac attttgataa taaaagtaat tttcagaaat
     6541 aaaatactgt ccgaaccgtt ttttagaatt tgcaaaggcg attggggcgg tacagaaaaa
     6601 ctattatccc gcccgcccac ttgaaatttt tatgcccaag ccctatcctg cacgctatcg
     6661 tgccaatccc aaccgaaaag gaaaaataat gagcagcgaa ttgattgtac acaccggcga
     6721 tgccgctttt gaaaaagacg ttttaaatgc agatatcccc gtcctgctgg acttttgggc
     6781 tccgtggtgc ggcccctgca aaatgattgc cccgattttg gacgacattg ccgccgaatt
     6841 tgaaggccgt ctgaaagtgg tcaaaatcaa catcgacgac aacgaagcca ccccgtcccg
     6901 tttcggcgtg cgcggcattc cgaccctgat ggtgttcaaa aacggcgaag tcgtcgccac
     6961 caaagtcggc gcattggcaa aaggtcagct gaccgccttt gtcgaagcct ctatcgcctg
     7021 ataaagcgca atcgaaaaag ccgccggaag attccggcgg ctttttcgca cccttaagat
     7081 ttgtggcgga tttcccagca cctatggatt tttttgttgc ggaaatcttc gggaacggat
     7141 tgtttggaaa tgtctttgac ggcgtattgt tccgatacca agtcgtctaa gacgaagctg
     7201 cgcaggttgt tggaaaagta caaaatgccg tctgaagcga gcagcttcac cgcgccgtca
     7261 atcagctttt tgtggtcgcg ctggatgtcg aggatgtcgg acattttctt gctgttggaa
     7321 aaactgggcg ggtccatcac aatgaggtcg aaccgcctgc cttccccata tgccgtctga
     7381 agatattgga acacgtcggc gcggacgatt ttatgccgtt ccgtatcgat gccgttcaat
     7441 tcaaaattgc gtctcgccca atcgagataa gtgttagaca aatcgacagt ttcgctggat
     7501 gccgcgccgc cggtggcggc atagacagtg aagctgccgg tgtaggaaaa caggtttaaa
     7561 aaacgtttgc ccgccgccgt ttcgccgact tttttgcgcg tgtttcgatg atccaaaaaa
     7621 agccccgtat ccaaatactt atcaaggttg acccaaaact tgcggccgtt ttcggtgatg
     7681 acgaaatcgt cgcccgcctt gccggttttt tcgtattgct gcaaaccttt ttggcgttcg
     7741 cggcgtttga ggcggatttg ttcgggcgca aaaccggtaa cgaaggcgac ggcttccaag
     7801 acttcggcaa gccacgcttc gtattcttcg ggccgcatca gccagccggt atcgtattcc
     7861 tgaaggtgga ttcgatcgcc gtaaacatcg gcggcaaagg ggaattgggg gatgtcgcgg
     7921 tcgtaaatgc gccaggcttc gatgccgttg cgtttcgccc atttcataag gtgtttgatg
     7981 tttttgccca agcggttggc aaacggtgtg atgtcggtca ttggtttcag gcggaataaa
     8041 gtggaaaacg gcaattttac tgtaattaac gcccgattgc ttgaccgttt cgggcaaacc
     8101 ctataccatc caccgcttat cttgtcatac gaagccatcg ccttccaacc taaaccgccc
     8161 ttacgggcgc gtttcttctg ttgctttgat tttgcaaagc gtatctgtgc aggttgccgt
     8221 cgatgtaaac cacaagcaag ccgcttgcga caaccctgta acttcacatt ccccgtatcg
     8281 ttacccttcc ctgcttcagg ccgtctgaac ctttcggacg cgggcgttgt tgtcttccaa
     8341 ggatagccat gtctattaaa tttgccgatt tgaaccttga taaaaacatt ttgtccgccg
     8401 tcagcagcga gggttacgaa agcccgacgc cgattcaggc gcaggcgatt ccgtttgctt
     8461 tggaaggccg cgacatcatg gcttcggcgc aaaccggctc cggcaaaacc gccgcctttc
     8521 tgttaccgac tttgcagcga ctgaccaaac gcagcgaaaa accgggcaaa ggcccacgtg
     8581 ctttggtgtt gaccccgacc cgcgaattgg cggctcaagt cgagaaaaac gcgctggcgt
     8641 atgccaaaaa tatgcgttgg ttccgtaccg tcagcatcgt cggcggcgca tcgttcggct
     8701 accaaacccg cgccctgagc aaaccggtcg atctgattgt cgccacgccg ggccgcctga
     8761 tggacttgat gcaaagcggc aaagtcgatt ttgaacgttt ggaagtgctg attctggacg
     8821 aagccgaccg tatgttggat atgggcttta tcgacgacat cgaaaccatc gtggaagcaa
     8881 cgccgagcga ccgtcagact ttattgttct ccgccacttg ggacggcgcg gtcggcaaac
     8941 tggcacgcaa actgaccaaa gaccctgaaa tcatcgaagt cgaacgcgtg gacgaccaag
     9001 gcaaaatcga agaacaactg ctgtactgcg acgatatgcg ccacaaaaac cgcctgctcg
     9061 accacatcct gcgtgatgcc aacatcgacc aatgcgtgat tttcacgtcc accaaagcca
     9121 tgaccgaagt catcgcggat gaattgtacg aaaaaggttt cgccgccaac tgcctgcacg
     9181 gcgatatgcc gcaaggctgg cgtaaccgca cgctgatgaa cttgcgcaaa ggccgctgca
     9241 aaattttggt tgccaccgat gtagccgcac gcggtatcga cgtaccgacc attacccacg
     9301 ttatcaacta cgacctgccg aaacaggcgg aagactacgt ccaccgcatc gggcgcaccg
     9361 gccgcgcagg ccgcacgggt attgcgatta cgtttgccga agtgaacgaa tacgtcaaag
     9421 tccacaaaat cgaaaaatac attaaccgaa aactgcccga actgaccatc gagggcatgg
     9481 aaccgacccg caaacgcaaa tccgcaggcg gcaagccgaa aggcaaaggc ggctggggcg
     9541 atcgtaaatc cggcggttgg cgcggcgatc ataaaccggg caaagaaggc ttcggcggca
     9601 aaacgcgcgg cgaaggtttc aagaaagaag gctttaagaa agacggtttc aaaaaaaccg
     9661 gcgaaggctt caaaggcaaa cgtaaagccg gcgattcttt tgcaggcaaa agcgaacgcc
     9721 gttacaaaga ccgctaagcc ccaacctgcc tcataaacca atgccgtctg aaaccgattt
     9781 cgagtttcag acggcatttt tgcaatgttt caacaccgcc cggctttgat acccaaagga
     9841 ttaatctgca atatagtgga ttaacaaaaa ccagtac
//
LOCUS       DAXHPV010000062         9781 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.062, whole genome shotgun sequence.
ACCESSION   DAXHPV010000062 DAXHPV010000000
VERSION     DAXHPV010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9781)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9781)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9781
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.062"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(338..4507)
                     /locus_tag="ACFM6C_001120"
     CDS             complement(338..4507)
                     /locus_tag="ACFM6C_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB
                     domain-containing protein"
                     /protein_id="HFC6158583.1"
                     /translation="MTDTAPTDTDPTENGTRKMPSEHHPTPPAKKRRPLLKLSAALLS
                     VLILAVCFLGWLAGTEAGLRFGLYQIPSWFGVNISSQNLKGTLLDGFDGDNWSIETEG
                     ADLKISRFRFAWKPSELMRRSLHITEISAGDIAIVTKPTPPKEERPPLSLPDSIDLPA
                     AVYLDRFETGKISMGKAFDKQTVYLERLDASYRYDRKGHRLDLKAADTPWSSSSGAAS
                     VGLKKPFALDTAIYTKGGLEGKTIHSTARLSGSLKDVRAELAIDGGNIRLSGKSVIHP
                     FAESLDKTLEEVLVKGFNINPAAFVPSLPDAGLNFDLTAIPSFSDGIALEGSLDLENT
                     KAGFADRNGIPVRQVLGSFVIRQDGTVHIGNTSAALLGRGGIRLSGKIDTGKDILDLN
                     IGINSVGAEDVLQTAFKGRLDGSIGIGGTTASPKISWQLGIGTARTDGSLAIASDPAN
                     GQRKLVLDTVNIAAGQGSLTAQGYLELFKDRLLKLDIRSRAFDPSRIDPQLPAGNING
                     SINLAGELAKEKFTGKMRFLPGTFNGVPIAGSADIVYESRHLPRAAVDLRLGRNIIKT
                     DGGFGKKGDRLNLNITAPDLSRFGFGLAGSLNVRGHLSGDLDGGIRTFETDLSGAARN
                     LHIGKAADIRSLDFTLKGSPDTSRPIRADIKGSRLSLSGGAAVVDTADLMLDGTGVQH
                     RIRTHAAMTLDGKPFKFDLDASGGINRELTRWKGSIGILDIGGAFNLKLQNRMTLEAG
                     AERVAASAANWQAMGGSLNLQHFSWDKKTGISAKGGAHGLHIAELHNFFKPPFEHNLV
                     LNGDWDVAYGRNARGYLNISRQSGDAVLPGGQALGLNAFSLKTRFQNDRIGILLDGGA
                     RFGRINADLGIANAFGGNMANAPLGGRITASLPDLGALKPFLPAAAQNITGSLNAAAQ
                     IGGRVGSPSVNAAVNGSSNYGKINGNITVGQSRSFDTAPLGGRLNLTVADAEVFRNFL
                     PVGQTVKGSLNAAVTLGGSIADPHLGGSINGDKLYYRNQTQGIILDNGSLRSHIAGRK
                     WVIDSLKFRHEGTAELSGTVGMENSGPDVDIGAVFDKYRILSRPNRRLTVSGNTRLRY
                     SPQKGISVTGMIKTDQGLFGSQKSSMPSVGDDVVVLGEVKKEAAAPLPVNMNLTLDLN
                     DGIRFAGYGADVTIGGKLTLTAQSGGSVRGVGTVRVIKGRYKAYGQDLDITKGTVSFV
                     GPLNDPNLNIRAERRLSPVGAGVEILGSLNSPRITLTANEPMSEKDKLSWLILNRAGS
                     GSSGDNAALSAAAGALLAGQINDRIGLVDDLGFTSKRSRNAQTGELNPAEQVLTVGKQ
                     LTGKLYIGYEYSISSAEQSVKLIYRLTRAIQAVARIGSRSSGGELTYTIRFDRFSGSD
                     KKDSAGNSKGK"
     gene            complement(4562..6391)
                     /locus_tag="ACFM6C_001121"
     CDS             complement(4562..6391)
                     /locus_tag="ACFM6C_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter assembly complex family protein"
                     /protein_id="HFC6158584.1"
                     /translation="MMIKPTALLLPALFFFPHAYASAADLSENKAAGFALFKNKSPNT
                     ESVKLKPKFPVRIDTQDSEIKDMVEEHLPLITQQQEEVLDKEQTGFLAEEAPDNVKTM
                     LRSKGYFSSKVSLTEKDGAYTVHITPGPRTKIANVGVAILGDILSDGNLAEYYRNALE
                     NWQQPVGSDFDQDSWENSKTSVLGAVTRKGYPLAKLGNTRAAVNPDTATADLNVVVDS
                     GRPIAFGDFEITGTQRYPEQIVSGLARFQPGTPYDLDLLLDFQQALEQNGHYSGASVQ
                     ADFDRLQGDRVPVKVSVTEVKRHKLETGIRLDSEYGLGGKIAYDYYNLFNKGYIGSVV
                     WDMDKYETTLAAGISQPRNYRGNYWTSNVSYNRSTTQNLEKRAFSGGIWYVRDRAGID
                     ARLGAEFLAEGRKIPGSDIDLGNSHATMLTASWKRQLLNNVLHPENGHYLDGKIGTTL
                     GTFLSSTALIRTSARAGYFFTPENKKLGTFIIRGQAGYTLARDNADVPSGLMFRSGGA
                     SSVRGYELDSIGLAGPNGSVLPERALLVGSLEYQLPFTRTLSGAVFHDMGDAAANFKR
                     MKLKHGSGLGVRWFSPLAPFSFDIAYGHSDKKIRWHISLGTRF"
     gene            6785..8014
                     /gene="sstT"
                     /locus_tag="ACFM6C_001122"
     CDS             6785..8014
                     /gene="sstT"
                     /locus_tag="ACFM6C_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0015826 - threonine transport [Evidence
                     IEA];
                     GO_process: GO:0032329 - serine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HFC6158585.1"
                     /translation="MAFGKSLFHAIGRVSLVRQIAAGLALGIVIGSVSPQLGLAAGLF
                     GSLFVGALKAVAPVLVFILVAATIAQHQKGNKAHIRPIIVLYLIGTFSAALTAVIAGM
                     VFPTHIVLAGAGDVSAAPPSGIVEVLKSLLMNLVANPINAIANANYIGILAWALVLGA
                     ALRNHGSDVTRQVVADLAEAVSTVVKWIIRFAPLGIFGLVSSTIAETGFGALAGYAKL
                     LAVLLGCMAFIALVVNPAIVWWKIRRNPYPLVFTCLRESGVYAFFTRSSAANIPVNMA
                     LAKKLGLHEDTYSISIPLGATVNMGGAAITITVLAMAAAHTQGIQVDFATALLLSLVA
                     TVSACGASGVAGGSLLLIPLACSLFGISNDVAMQVVAVGFIIGVIQDSAETALNSSTD
                     VLFTAAADLGRQRNRAE"
     gene            8126..9409
                     /locus_tag="ACFM6C_001123"
     CDS             8126..9409
                     /locus_tag="ACFM6C_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HFC6158586.1"
                     /translation="MFERSVIAMACIFALSACGGGGGGSPDVKSADTLSKPAAPVVAE
                     KETEVKEDAPQAGSQGQGAPSTQGSQDMAAVSAENTGNGGAATTDKPKNEDEGPQNDM
                     PQNSAESANQTGNNQPADSSDSAPASNPAPANGGSNFGRVDLANGVLIDGPSQNITLT
                     HCKGDSCNGDNLLDEEAPSKSEFENLNESERIEKYKKDGKSDKFTNLVATAVQANGTN
                     KYVIIYKDKSASSSSARFRRSARSRRSLPAEMPLIPVNQADTLIVDGEAVSLTGHSGN
                     IFAPEGNYRYLTYGAEKLPGGSYALRVQGEPAKGEMLAGTAVYNGEVLHFHTENGRPY
                     PTRGRFAAKVDFGSKSVDGIIDSGDDLHMGTQKFKAAIDGNGFKGTWTENGGGDVSGR
                     FYGPAGEEVAGKYSYRPTDAEKGGFGVFAGKKEQD"
     gene            complement(9484..9699)
                     /locus_tag="ACFM6C_001124"
     CDS             complement(9484..9699)
                     /locus_tag="ACFM6C_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158587.1"
                     /translation="MFKLGVYACLGLFAGWVLLLIVQLWFSFLEAELFFKITLTMAGL
                     FVIILAALLVCGQYFSEKKMKDDGFIN"
     gene            complement(9692..>9781)
                     /locus_tag="ACFM6C_001125"
     CDS             complement(9692..>9781)
                     /locus_tag="ACFM6C_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4177 domain-containing protein"
                     /protein_id="HFC6158588.1"
                     /translation="VVTMEKDLRRMLLFFKREAYVVILERDRV"
BASE COUNT         1956 a         2502 c         3028 g         2295 t
ORIGIN      
        1 gcgggaatga cggaaagtgg cgggaatgac ggttcgggca ttccttaaat tacctgtgta
       61 tcgttgtaaa tcttagagat ggcggaatat agcggattaa caaaaaccag tacagcgttg
      121 ccttgccttg gctcaaagag aacgattctc taaggtgctc aagcaccgag tgaatcggtt
      181 ccgtactatt tgtactgtct gcggcttcgt cgccttatcc tgatttttgt taatttacta
      241 tatcgattct gttcccttgc aggcggacgg cggcggcgga cggtggaaaa gcaggttttc
      301 aaatgtccgg tttggcggcg cgccgtctga aaaccgctta ttttcctttg ctgtttccgg
      361 cggagtcttt tttgtccgaa ccggagaagc ggtcgaaacg tatggtgtat gtcagctcgc
      421 cgcccgacga acggctgccg atacgggcaa ccgcctgtat ggcgcgggtc agccggtaaa
      481 tcagtttgac ggactgttcc gcgctggaga tgctgtattc gtagccgatg tagagtttgc
      541 cggtcagttg tttgccgacg gtcagcacct gttcggcggg gttgagttcg ccggtttgcg
      601 cgttgcggct gcgcttgctg gtaaagccca aatcatccac cagcccgatg cggtcgttga
      661 tttgcccggc aagcagcgcg ccggcggctg cggacagggc ggcattgtcg ccgctgctgc
      721 cactgccggc gcggttgagg atgagccagg agagcttgtc tttttcactc atcggttcgt
      781 ttgccgtcag cgtaatgcgc ggactgttga ggctgcccaa tatttccacg cccgcaccga
      841 cgggggaaag gcggcgttcg gcgcggatgt tgaggttggg gtcgttgagc gggccgacaa
      901 aggagaccgt gcctttggta atgtccaaat cctgcccgta tgccttataa cgccctttga
      961 tgacgcggac cgtgcccacg ccccgcacgc ttccgcccga ttgggcggtc agggtcagtt
     1021 tgccgcctat ggtaacgtcc gcgccgtagc cggcgaagcg gatgccgtca ttgaggtcta
     1081 aagtcaggtt catattgacg gggagcggtg ccgccgcctc ttttttgact tcgcctaata
     1141 cgacgacatc gtcgccgacg gacggcatcg aggatttttg cgaaccgaac agcccctgat
     1201 ccgttttaat catcccggta acggatatgc ctttttgcgg cgaatagcgc aggcgggtgt
     1261 tgccggaaac cgtcaggcgg cggttggggc gggacaggat gcggtatttg tcgaacaccg
     1321 cgccgatatc gacatcgggt ccgctgtttt ccataccgac cgtaccggag agttccgccg
     1381 tcccttcgtg ccggaatttc aggctgtcga ttacccattt cctgcccgcg atatgcgaac
     1441 gcagcgagcc gttgtccaag atgatgcctt gggtttggtt gcggtaatag agtttgtcgc
     1501 cgttgatgct gccgcccaag tgcggatcgg cgatgctgcc gccgagggtt acggcggcat
     1561 tcaggctgcc tttgacggtt tgtccgaccg gtaggaagtt gcggaatact tcggcatcgg
     1621 caacggtcag gttgagcctg ccgcccaaag gcgcggtatc gaaagagcgg ctttgcccga
     1681 cggtgatgtt gccgttgatt ttcccgtagt tgctgctgcc gttgacggcg gcattgacgg
     1741 acggagagcc tacccgtccg ccgatttgcg cggcggcatt caggctgccg gtaatgtttt
     1801 gcgcggcggc gggcagaaag ggcttcaatg cgcccaagtc gggaagggag gcggtaatcc
     1861 tgccgccgag cggtgcattt gccatattgc cgccgaaggc gttggcgatg cccaaatcgg
     1921 cgttaatccg cccgaaacgc gcgccgccgt caagcaggat tccgatacgg tcgttttgaa
     1981 agcgcgtttt cagggaaaat gcgttcaaac ccaaagcctg cccgccgggc aatacggcat
     2041 cgccgctttg ccggctgata ttgaggtagc cgcgcgcgtt gcgcccgtag gcgacatccc
     2101 agtcgccgtt taaaaccaga ttgtgttcga agggcggttt gaagaaattg tgcaactcgg
     2161 cgatatgcag accgtgtgcg ccgccttttg ccgatatgcc ggttttttta tcccaagaaa
     2221 agtgttgcag gttgaggctg ccgcccattg cctgccaatt tgccgcactt gccgccacgc
     2281 gttccgcacc ggcttcgagc gtcatacggt tttgcagctt gaggttgaat gcgccgccga
     2341 tgtcgaggat gccgatgctg cctttccatc gggtaagttc cctgttgatg ccgcctgaag
     2401 cgtccaaatc gaatttgaac ggtttgccat ccagcgtcat ggcggcgtgt gtgcggatgc
     2461 ggtgctgcac gcccgtgccg tccagcatca ggtcggcggt atcgacaacc gccgctccgc
     2521 ccgacagcga aaggcggctg cctttgatgt cggcgcgtat cgggcggctt gtgtcgggcg
     2581 aacctttgag cgtgaaatcg agcgaacgga tgtctgccgc cttgccgatg tgcaggttgc
     2641 gcgccgcgcc ggaaaggtcg gtttcaaagg ttcggatgcc gccgtccaaa tcgccggaaa
     2701 ggtgtccgcg tacatttaaa gaccccgcga gtccgaaacc gaaacgggat aaatcgggtg
     2761 cggtgatatt gaggttaagc cggtcgcctt ttttgccgaa gccgccgtct gttttaataa
     2821 tgttccgccc cagccgcaaa tcgacggcgg cacgcggaag gtggcgggac tcgtaaacaa
     2881 tgtcggcact gccggcaatc ggtacgccgt tgaacgtgcc gggtaaaaac cgcattttgc
     2941 ctgtgaattt ctcttttgcc agttcgccgg caaggtttat tgagccgttg atattgcctg
     3001 ccggaagttg cggatcgatg cgcgaagggt cgaatgcgcg ggaacggatg tccagcttga
     3061 gcaggcggtc tttaaacagc tcgagatagc cttgcgcggt caggctgcct tgcccggcgg
     3121 cgatgttgac ggtgtcgagc accagtttcc gctgtccgtt tgcggggtcg cttgcaatgg
     3181 cgaggctgcc gtccgtgcgc gccgtgccga tgccgagttg ccaagagatt ttgggcgagg
     3241 cggtcgtgcc accgatgccg atgctgccgt ccaacctgcc tttgaacgcg gtttgcagta
     3301 cgtcttccgc gccgacggag ttgatgccta tatttaaatc gaggatgtct tttccggtgt
     3361 cgattttgcc cgacagcctg atgccgcccc gtccgagcag ggcggcggac gtattgccga
     3421 tatgcaccgt gccgtcctgc cggatgacaa agctgcctaa aacctgacgg acggggatgc
     3481 cgttgcggtc ggcaaaaccg gctttggtgt tttccaaatc gagcgagcct tccagcgcga
     3541 tgccgtctga aaacgacggg atggcggtca ggtcgaaatt cagcccggca tcgggcaggg
     3601 aaggtacgaa ggcggccgga ttgatgttga accctttgac cagtacttct tccaatgttt
     3661 tatccaatga ttcggcaaac gggtggatga cggattttcc cgagaggcgg atattgccgc
     3721 cgtcgatcgc cagttcggcg cgcacatcct tcaggctacc gctcagccga gccgtactgt
     3781 gtatggtttt gccttcgagt ccgcctttgg tgtaaatggc ggtatcgagg gcaaacggtt
     3841 ttttcaagcc gaccgaggcc gcccccgacg aactgctcca cggtgtgtcg gcggccttca
     3901 ggtcaaggcg gtgtcctttg cggtcgtaac ggtatgaagc atccagccgt tcgagataga
     3961 cggtttgttt gtcaaaggct ttgcccatgc tgattttgcc cgtctcgaag cggtcgagat
     4021 agacggcggc aggcaggtct atgctgtcgg gaaggctgag cggcgggcgt tcttctttag
     4081 gcggagtcgg tttggtaacg atggcgatgt cgccggcgga aatttcggta atgtgcaggc
     4141 tgcggcgcat cagttcggac ggtttccacg cgaagcggaa gcggctgatt ttaaggtctg
     4201 ccccctcggt ttctatcgac cagttgtcgc cgtcgaagcc gtcgagcagc gtgcctttga
     4261 ggttttggga ggaaatgttt acgccgaacc aagacgggat ttggtacagc ccgaagcgca
     4321 aacccgcttc cgtgccggcg agccagccga ggaaacatac tgccaaaatc agaacagaca
     4381 gcagtgccgc cgacagcttc agcagcgggc ggcgtttttt tgccggcggg gtagggtggt
     4441 gttcagacgg cattttgcgc gtgccgtttt cggtcggatc ggtatctgtc ggtgcggtat
     4501 cggtcataat gtctgtttca aaatggtttg ctgcaatgcc gtctgaagcg gccgtatcgg
     4561 tttagaagcg tgttcccaag ctgatgtgcc agcggatttt cttatcgctg tgcccgtagg
     4621 cgatgtcgaa ggaaaacggc gcaagcgggc tgaaccagcg cacgcccagt cccgaaccgt
     4681 gtttcagctt catacgtttg aaattggcgg cggcatcgcc catatcgtgg aataccgcgc
     4741 cggaaagggt gcgcgtaaac ggcagttggt attccaggct gcccaccaag agggcgcgtt
     4801 cgggcaggac cgatccgttc gggccggcaa gtccgatgct gtcgagttcg taaccgcgca
     4861 cggaagacgc gccgccgctg cggaacatca gccccgaggg gacatcggca ttgtcgcggg
     4921 caagggtgta acccgcttgt ccgcgtatga tgaacgtgcc gagtttcttg ttttcgggcg
     4981 tgaagaaata acctgcgcgg gcagaggtgc ggatcagcgc ggtggaggac aggaatgtgc
     5041 ccaaagtcgt accgattttg ccgtcgaggt aatggccgtt ttcgggatgc agcacgttgt
     5101 tgagcagctg gcgtttccaa gaggcggtca gcatcgtggc gtggctgttg cccaaatcga
     5161 tatccgagcc ggggattttc cggccttctg cgagaaactc tgcccccagc ctggcatcga
     5221 tgcccgcgcg gtcgcgcaca taccagatgc cgccggagaa ggcgcgtttt tcgaggtttt
     5281 gggtggtcga acggttgtag gaaacgttgc ttgtccagta gttgccccga tagttgcgcg
     5341 gctggctgat gccggcggca agcgtggttt cgtatttgtc catatcccag acgaccgagc
     5401 cgatatagcc tttgttgaag aggttgtaat agtcgtaggc gattttgccg cccaaaccgt
     5461 attccgaatc gaggcggatg ccggtttcga gtttgtggcg tttgacctcg gttacgctga
     5521 ctttgacggg aacgcggtcg ccttggagac ggtcgaagtc ggcttgtacg gacgcgccgg
     5581 aataatgccc gttttgttcg agcgcctgtt ggaagtcgag cagcaggtcg aggtcgtagg
     5641 gcgtgcccgg ttggaagcgc gccaggccgg agacgatttg ttcggggtaa cgctgcgtgc
     5701 cggtgatttc aaagtcgccg aaggcgatgg ggcggccgct gtccacgacg acattcaaat
     5761 cggcggtggc ggtatcgggg ttgacggccg cccgggtgtt gccgagtttg gcaagcgggt
     5821 agcctttgcg cgttaccgcg ccgaggacgg aagttttgct gttttcccaa ctgtcctgat
     5881 cgaaatcgct gcctaccggc tgctgccagt tttccagcgc gttgcggtag tattcggcga
     5941 ggttgccgtc tgaaaggatg tcgccgagga tggcgacgcc gacgttggcg attttggtgc
     6001 gcgggcccgg tgtgatgtgc accgtataag ctccgtcttt ttccgtcagg ctgaccttgc
     6061 tgctgaaata gcctttgctg cggagcattg ttttaacgtt gtccggcgct tcttcggcga
     6121 ggaagcccgt ctgttccttg tccaatactt cttcctgctg ctgcgtgatg agcggcaggt
     6181 gttcttcgac catatctttg atttcactgt cctgcgtgtc gatgcggacg ggaaatttgg
     6241 gttttaattt gactgattcg gtgttggggc ttttgttttt gaacaatgcg aaacccgccg
     6301 ccttgttttc ggaaaggtcg gcggcagacg cgtatgcgtg cggaaagaaa aataaagccg
     6361 gcaggagcag ggcggtcggt ttgatcatca tggtacgggt gtcgggtatc ggtgtggcgg
     6421 ctttcgattt taacactgtt cggacggggc gggacgcttc agacggcata ccgccgccgg
     6481 tatttcggag gttgcggccc acctggaatg tatctgcttg ttttaaggta ttttgtttcc
     6541 aatccgcata tggaaaacag gctgcgtttc ggaatagtgt cgaaaaataa acgggattaa
     6601 ataaatttat tttcgttcaa taaattaaac cgttgcgccg aatgataaag caaagcctgt
     6661 ccggcactgc atagggtaaa tcaacgcaac cttaaaacac agccgaaaaa taaaaaaaac
     6721 acagagaatg agttttcttt taaaatacaa cattttttaa catatcacaa cataaggaag
     6781 aattatggcg ttcggcaaat ccttatttca tgcgatcggc cgcgtcagcc tggtcaggca
     6841 gattgccgcc ggtttggcgt tgggtatcgt aatcggttcg gtttccccgc aactgggctt
     6901 ggcggcaggc ttgttcggca gcctgtttgt cggcgcactc aaagcggtcg cgccggtttt
     6961 ggtatttatt ttggtggcgg ccacaatcgc gcagcaccaa aaaggcaaca aggcgcatat
     7021 caggccgatt atcgtccttt acctcatcgg tacgttttcc gcagccctga ccgccgtcat
     7081 cgccggtatg gttttcccga cgcacattgt tttggcgggc gcgggcgatg tgtccgccgc
     7141 gccgccttcc ggcattgtgg aagtattgaa atcgctgctg atgaacctgg tcgccaaccc
     7201 gattaacgcg attgccaatg ccaactatat cggcattttg gcttgggctt tggttttggg
     7261 cgcggcgttg cggaatcacg gttcggacgt tacgcggcag gtcgttgccg atttggcgga
     7321 agcggtttcc accgtcgtga aatggattat ccgttttgcc cctttgggca ttttcgggct
     7381 ggtgtcgtcc acaatcgcgg agacgggttt cggcgcgctg gcgggttatg cgaagctgct
     7441 tgcggtactg ttgggctgta tggcgtttat cgcgctggtg gtcaatcccg ccatcgtgtg
     7501 gtggaaaatc cgccgcaacc cttatccgct ggtgttcacc tgcctgcgcg aaagcggcgt
     7561 gtatgccttc tttacccgtt cttccgccgc caatatcccc gtgaatatgg ctttggcgaa
     7621 aaaactgggg ctgcacgaag acacttattc gatttccatc ccgttggggg cgaccgtcaa
     7681 tatgggcggc gcggcgatta cgattaccgt tttggctatg gcggcggcgc acacccaagg
     7741 catacaggtt gattttgcca ccgcgctgct gttgagcctg gtggcgacgg tcagcgcgtg
     7801 cggcgcgtcc ggcgtggcgg gcggttcgct gctgctgatt ccgctggcgt gcagcctgtt
     7861 cggcatcagc aacgatgtcg ccatgcaggt ggttgccgtc ggctttatca tcggcgtgat
     7921 tcaggattcg gcggaaacgg cgttgaattc ttcaaccgat gttttgttta ccgctgccgc
     7981 cgatttgggc cgacagagaa accgggcgga ataaaccaag ctatgccgtc tgaagcccgt
     8041 ttggcgttca gacggcatat ttttacaatt ttatgggcat atggcggaaa caataccggc
     8101 tgccttgaat atgaagggga tgatgatgtt tgaacgcagt gtgattgcaa tggcttgtat
     8161 ttttgccctt tcagcctgtg ggggcggcgg tggcggatcg cccgatgtta aatcggcgga
     8221 cacgctgtca aaaccggccg ctcctgttgt tgctgaaaaa gagacagagg taaaagaaga
     8281 tgcgccacag gcaggttctc aaggacaggg cgcgccatcc acacaaggca gccaagatat
     8341 ggcggcagtt tcggcagaaa atacaggcaa tggcggtgcg gcaacaacgg acaaacccaa
     8401 aaatgaagac gagggaccgc aaaatgatat gccgcaaaat tccgccgaat ccgcaaatca
     8461 aacagggaac aaccaacccg ccgattcttc agattccgcc cccgcgtcaa accctgcacc
     8521 tgcgaatggc ggtagcaatt ttggaagggt tgatttggct aatggcgttt tgattgatgg
     8581 gccgtcgcaa aatataacgt tgacccactg taaaggcgat tcttgtaatg gtgataattt
     8641 attggatgaa gaagcaccgt caaaatcaga atttgaaaat ttaaatgagt ctgaacgaat
     8701 tgagaaatat aagaaagatg ggaaaagcga taaatttact aatttggttg cgacagcagt
     8761 tcaagctaat ggaactaaca aatatgtcat catttataaa gacaagtccg cttcatcttc
     8821 atctgcgcga ttcaggcgtt ctgcacggtc gaggaggtcg cttcctgccg agatgccgct
     8881 aatccccgtc aatcaggcgg atacgctgat tgtcgatggg gaagcggtca gcctgacggg
     8941 gcattccggc aatatcttcg cgcccgaagg gaattaccgg tatctgactt acggggcgga
     9001 aaaattgccc ggcggatcgt atgccctccg tgtgcaaggc gaaccggcaa aaggcgaaat
     9061 gcttgctggc acggccgtgt acaacggcga agtgctgcat tttcatacgg aaaacggccg
     9121 tccgtacccg actagaggca ggtttgccgc aaaagtcgat ttcggcagca aatctgtgga
     9181 cggcattatc gacagcggcg atgatttgca tatgggtacg caaaaattca aagccgccat
     9241 cgatggaaac ggctttaagg ggacttggac ggaaaatggc ggcggggatg tttccggaag
     9301 gttttacggc ccggccggcg aagaagtggc gggaaaatac agctatcgcc cgacagatgc
     9361 ggaaaagggc ggattcggcg tgtttgccgg caaaaaagag caggattgat gttgatgccg
     9421 tctgaagcgg gggcgttcag acggcattgt gatgtttggg gtggggtccg gttcaagtcc
     9481 gcatcagttg ataaacccgt cgtctttcat tttcttttcg gaaaaatact ggccgcatac
     9541 cagcagggcg gcgaggatga tgacaaacag ccccgccata gtcagtgtga ttttgaagaa
     9601 caattccgct tcgagaaaag aaaaccaaag ttgaacaatc agcagcagca cccagccggc
     9661 aaacagtccg agacaggcat aaacgccgag cttaaacacg atcccgctcc aaaatgacga
     9721 cgtaggcctc gcgtttgaaa aacagcagca tacggcgcaa atctttttcc atcgttacga
     9781 c
//
LOCUS       DAXHPV010000063         9666 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.063, whole genome shotgun sequence.
ACCESSION   DAXHPV010000063 DAXHPV010000000
VERSION     DAXHPV010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9666)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9666)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9666
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.063"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..437
                     /locus_tag="ACFM6C_001126"
     CDS             <1..437
                     /locus_tag="ACFM6C_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158589.1"
                     /translation="SGGIWGENSRKPVFGFRLSGGKGILQRSQLKFAAGVLSKEMQEL
                     AGMTRATVWLSDDTLVKQVDSREGQNFDDSYYAFLPDMLQNPEHVIRDNRELIFTARY
                     KGSALWAVLKYIKEVDEIYLQSYRISNDKEIAKFMAKKKVLK"
     gene            547..963
                     /locus_tag="ACFM6C_001127"
     CDS             547..963
                     /locus_tag="ACFM6C_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0044423 - virion component [Evidence
                     IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016032 - viral process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HFC6158590.1"
                     /translation="MIDVKIDNIFVVLNQIEQLGNGIENRYLLMRRLSETMHTAVKLN
                     FRYAGRPKWLGLKYRDGKPLSDSGRLKDSFSTLSDNDTALVGTNIVYAAIHNFGGMAG
                     RNRKVRIPQREFLTLTDDDKQALMDDVQDYFSGLIP"
     gene            1194..2255
                     /locus_tag="ACFM6C_001128"
     CDS             1194..2255
                     /locus_tag="ACFM6C_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage protease"
                     /protein_id="HFC6158591.1"
                     /translation="MSKNAQKTLLAVCSFEVQPKDGRIQLLPYGEFRAVDGRPTDVPA
                     WYLTEENGHDVALLANSSRNQLVVDYEHQTLYKEKNGQPAPAAGWMRWLEFTPKGMFA
                     EVEWTDKAAAAIAAKEYRYISAVFSYDTKGYVSKIFHAALTNFPALDGMDEVLAAASA
                     QILKPETEQNPMKELLQQLFGLPDAGEEELKAALSALVEAKPKDVALSADVFAQLAEK
                     DSRIAALTAQTAKPDLTKYAPISVVQELQSKVAALTAKQEADKGNELITAALTSGKLL
                     PAQKEWAEGVLKQPGGLAFLTGFIENAQPVAALAGSQTGGKAPDERVAALTAEEAAAA
                     KMLGMSGEEFVKIKESEGK"
     gene            2317..2643
                     /locus_tag="ACFM6C_001129"
                     /pseudo
     CDS             2317..2643
                     /locus_tag="ACFM6C_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217232.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2631..3328
                     /locus_tag="ACFM6C_001130"
                     /pseudo
     CDS             2631..3328
                     /locus_tag="ACFM6C_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284601.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
     gene            3325..3885
                     /locus_tag="ACFM6C_001131"
     CDS             3325..3885
                     /locus_tag="ACFM6C_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmfQ family protein"
                     /protein_id="HFC6158592.1"
                     /translation="MSYQDILRGLLPPVSYARNAPRVRAQAEIDGAALDAVAESAQSV
                     ADAVDPRSAGQMLADWERVLGLDGTGKNRQRRVLAVMAKLNETGGLSIPYFVRLAEAA
                     GYQIQIDEPQPFRAGVNRAGDRLAPQEIMWVWHVNVRGGNNRITRFRAGISAAGDRLT
                     DYSDAVIESLFNRLKPAHTAIRFTYR"
     gene            3896..5869
                     /locus_tag="ACFM6C_001132"
     CDS             3896..5869
                     /locus_tag="ACFM6C_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyocin knob domain-containing protein"
                     /protein_id="HFC6158593.1"
                     /translation="MHPIETPDKTFHDGDGVSELGTILPAWWLNQVQSELLAVLTAAG
                     IQPDKSQPNQLLAALNRLAVVITGDQTITGQKTFTAQTQFQSGIHLSANQTNWNGGHK
                     AYIGADADNAHIVFGDNTLRLHGANNRISYNNHDIFHKANKPRFAEDIESKPNTLSGY
                     GIRNFKVETFRGDLNTLKTDGIYSLSTAVGSSNLPIENTACHIQVIAGTKHGWCRQLG
                     YPAYTSDVYERHQTSSANDNWSAWKKLNSDGIPVGAIVSFPKAVRNPAGYLKANGTTF
                     AQNTFPDLYRALGNSNRLPDLSRTDIGITAWFPSDQIPTGWLAFDDIRTRVTETAYPE
                     LYRLLTGKYGSIQNVPQAEDRFIRNAGNSLAVGTKQEDEIKRHVHKVFSHWTNHTDTA
                     AVGYEDRNERQRSALVSTWTDENLNDNGFLTPRPDSKMATGGDENRPKALVLKLCIKA
                     ADTLGEAVFWIKSHGETINAGALDAGTLAQGLQDKADRDHTHTAAQIQGLDEKISTAV
                     AAQFTRQTIGGVDIVRFPDGTMIQTGSYRFTRSGGPIENEVVFPVAFADGNVKCFVSE
                     RHSGRVTGARRQHNWLFIRAKNHAAAIITNWYEGSCDWMAIGKAASGNAASSPIGPEI
                     PETNEEPQRESGRTSTGPRNRRRRDGLLEALQD"
     gene            complement(6488..6790)
                     /locus_tag="ACFM6C_001133"
     CDS             complement(6488..6790)
                     /locus_tag="ACFM6C_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HFC6158594.1"
                     /translation="MQRQSLTNADGEVRELAAEDFALARPIAEALPEDLAQVLFSHQK
                     QLEEKGVMQKRNTGKTPKQLVTIRLSADVVEKFRAGGKGWQTRINEVLRQYVAQLK"
     gene            complement(6762..7049)
                     /locus_tag="ACFM6C_001134"
     CDS             complement(6762..7049)
                     /locus_tag="ACFM6C_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HFC6158595.1"
                     /translation="MKIEFDSEKNQRNIEERNLPFESVGQIRWTTAVIVPDVRFDYPE
                     PRYVAAAYLGDTQRLHIVCFTPIKDGIRVISFRKANKREVKKYATSILNKR"
     gene            7129..7734
                     /locus_tag="ACFM6C_001135"
     CDS             7129..7734
                     /locus_tag="ACFM6C_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158596.1"
                     /translation="MTIYFKNGFYDDTLGSIPEGAVAVRAEEYAALLAGQAQGGQIAA
                     DSDGRPVLTPPRPSEYHEWDGKKWEIGEAAAAARFAEQKTATAFRLAAKADELKNSLL
                     AGYPQVEIDSFYRQEKEALARQADNNAPTPMLAQIAAARGVELDVLIEKVVEKSARLA
                     VAAGAIIGKRQQLEDKLNTIETAPGLDALEKEIEEWTLNIG"
     gene            7713..8009
                     /locus_tag="ACFM6C_001136"
     CDS             7713..8009
                     /locus_tag="ACFM6C_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase UvrD"
                     /protein_id="HFC6158597.1"
                     /translation="MDAKHRLKKYVYHLLVAIDQLFNALTGGAADETLSSRTYRGARL
                     AQKPKTRWKVLYTLINGVFFDRQHCRQAYISELKGRQHDARFNQSRAAGEKGTR"
     gene            8006..8215
                     /locus_tag="ACFM6C_001137"
     CDS             8006..8215
                     /locus_tag="ACFM6C_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158598.1"
                     /translation="MNYFGMVEFLRLMAMVRPPFVFFSGTRSELPAYLDLVAELRLTG
                     WERFAGSQTLTVSSTSTAIQATTTT"
     gene            complement(8385..9567)
                     /locus_tag="ACFM6C_001138"
                     /pseudo
     CDS             complement(8385..9567)
                     /locus_tag="ACFM6C_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743106.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
BASE COUNT         2447 a         2723 c         2641 g         1855 t
ORIGIN      
        1 aatcaggagg tatttggggc gaaaacagcc gaaaacctgt gtttgggttt cggctgtcgg
       61 gagggaaagg aattttgcaa aggtctcagc ttaaatttgc tgcgggtgta ttgagcaagg
      121 aaatgcaaga actggcaggt atgactcgag cgacggtgtg gctgtctgat gatacattgg
      181 tcaaacaggt ggacagtcgg gaggggcaga atttcgatga ctcctactat gcttttttgc
      241 cggatatgct gcaaaaccct gaacatgtca tccgcgacaa tcgtgaattg attttcacag
      301 ctcgctataa aggctcggca ttgtgggcag ttttaaaata tattaaggag gtggatgaga
      361 tttatctaca gtcgtaccga atcagtaacg acaaagagat tgccaaattt atggcgaaga
      421 agaaagtatt gaaatagacg ttgggcaagg ctcgaattca cttgcacacg ctctcggaca
      481 ccctaaaggg caggctgcgg tatcgagatt atcaccgctt ttccaacgcc tataaggaat
      541 cataccatga ttgatgtcaa aatagacaat atctttgtcg tcctaaacca aatcgagcag
      601 cttggcaacg ggatcgaaaa ccgctacctg ctgatgcgcc gactgtccga aaccatgcac
      661 acggcggtca agctcaattt ccgctacgca ggccgtccga aatggttggg gctaaaatac
      721 cgcgacggca agccgctttc ggattcgggt cgtctgaaag acagtttttc cacactgtca
      781 gacaacgata ccgcccttgt cggtacgaat atcgtctatg ccgccatcca caacttcggc
      841 ggtatggcgg ggcgcaaccg caaagttcgg attccgcaac gggaattttt gacgctgacg
      901 gacgacgaca aacaggcttt gatggacgat gtgcaggatt atttttcggg tctgataccg
      961 tgaatttata aaaccctcaa aaacgcgctt tttagcgcgt ttttttatgc gggtaataca
     1021 aacccctgcc caagatataa aaatcaatcc tagacgcttc taaaaagccc ctgaaaacga
     1081 ttaattgtgt atcgcgcgga caggttttaa aaaaatggcg ggagggtttg aagcacgcct
     1141 actctttgtt gttttttcaa ataggcaaaa tgaccgtatt gagagaggta cacatgtcca
     1201 aaaatgcaca aaaaacccta cttgccgtgt gcagtttcga ggtgcagcca aaagacgggc
     1261 gaatccaact gctgccatat ggcgaatttc gcgcagtaga cggtcgtccg actgatgtcc
     1321 ctgcgtggta tctgaccgaa gaaaacggtc atgatgtcgc gttgttggcc aacagctcgc
     1381 gcaatcagtt ggttgtcgat tatgaacacc agacgctcta caaagagaaa aacggacaac
     1441 ctgcacctgc cgccggttgg atgcgttggc tggagttcac gcctaaaggc atgtttgccg
     1501 aagtggagtg gacggacaag gcggctgcgg caattgccgc aaaagagtat cgctacatct
     1561 ctgctgtgtt ttcctatgac acaaagggat atgtaagcaa aatttttcac gcagcgctga
     1621 caaatttccc cgcgttggac ggtatggacg aggtgctggc ggcagcgtcg gcgcaaattt
     1681 taaaaccgga aacggagcaa aaccctatga aagagttgtt acagcaactg ttcggtctgc
     1741 ctgatgcggg cgaagaagaa ctgaaggcgg cattgtccgc gctcgtggaa gccaagccga
     1801 aagacgtggc attgtctgcc gacgtgttcg cgcagctggc ggaaaaagac agccgcatcg
     1861 cggcattgac ggcgcaaacc gccaagcctg atttgactaa atacgcgcct atctcagtgg
     1921 ttcaagagct gcaaagcaaa gtcgccgcgc tgactgccaa gcaggaagca gacaaaggca
     1981 acgaattgat taccgccgcg ctgacttcag gcaaattgct gcctgctcag aaggagtggg
     2041 cagaaggcgt attgaaacag ccgggcggct tggcattttt gaccggcttt attgaaaacg
     2101 cccagccggt cgctgcactg gcaggctcgc aaacgggcgg caaagcaccc gacgaacgcg
     2161 tcgccgcact gactgcggaa gaggcagccg cagcaaaaat gctgggcatg tccggcgaag
     2221 aatttgtaaa aatcaaagaa agcgaaggta agtaatggac aaatcagcga ttttgaccgc
     2281 aatcacggca gcattccgca aagaatttca aacgggggcc tgcaaaaccg cctgaaccgt
     2341 ttaaccgcca aacaggtgca gccggtagcg caggcagtgc gcctgttatc cacgtcatcg
     2401 ctgttgtcgg tggcaacggc attaatcgag gcgcatggcg aagagatgac cgcgcccgat
     2461 ttgattgagg ttaaccgcgc catgcgccgc cgtatgcagg ccgagattgc cgccttgcgg
     2521 gcggtgcaga cggctgctgc cgagtctggt gggctgacgg ccaacgccgt gtataccgag
     2581 gcttaccaaa cggcagaatc cctgcgcgcg gcggcaggcc gtctgaatgc gttggttgcg
     2641 gcggcacggc ggaaataccg gcaatcgccg acgagccggg cgcggccgcc aatgtggcga
     2701 cggcgaggcg caactgatgg ccgcccccgc cggtgtggcc accgaatgcc gccttaccgt
     2761 acaaggcggc accgaccgag aaagcgatgc ctcactgctg gcgcgtctgt tggaaatcat
     2821 ccgccgaccg cccgcaggcg gcaaccgtta cgactataaa aactgggcgt tgagtgttga
     2881 cggcgtaacc agcgcatatg tttatccgct gcgccgcggc ttgggtacgg tggatattgc
     2941 cattacctcc gccgacggtg tgtcgtcgga agaaactgtg cgccgcgtac aggcttatat
     3001 cgacgagatg cgcccggtaa cggcaaaaaa tgcgctggta ctcaagccaa ccgtaacggc
     3061 ggtgcctgtt accgtgcaag tcaagctcga cggcatcgac ttggacgagg ccaagcgccg
     3121 catacggacg gccctaaaag aatatttcga caccctgatc cccggcgacg gcctgactgt
     3181 gtcgcaaatc gaggctgcta tcagcaatgt ggatggtgtg atcgaccgcc gtctgactgc
     3241 gccgacggcc aaccgtgccg ccgatacggt taaccgcatc gagtggttta aagcgggcgc
     3301 gattaatgta acggagatgc cgtcatgagc tatcaagaca tcttgcgggg cctgttgccc
     3361 cccgtgtcgt atgcccgcaa tgccccgcgt gtgcgggcgc aggcagaaat agacggcgca
     3421 gcgctggatg cggtggcgga atcggctcaa agcgttgccg atgccgtcga cccgcgcagc
     3481 gccggccaaa tgctggccga ttgggagcgc gtattaggtt tggacggtac gggcaaaaac
     3541 cgccagcgcc gtgtgttggc cgtcatggcc aagctaaacg aaacaggcgg cttgagtatt
     3601 ccttattttg tgcgtttggc cgaggcggcg ggctatcaaa tccaaatcga cgaaccgcag
     3661 ccgttccgcg ccggtgtcaa ccgtgcgggc gaccgtcttg cgccgcagga aatcatgtgg
     3721 gtgtggcacg ttaacgtgcg cggcggcaac aaccgcatta cccgattccg cgccggtatc
     3781 tcggcggcgg gcgacaggct gaccgattac agcgatgccg tgatcgaaag cctgttcaac
     3841 cgcctcaagc ccgcccacac cgctatccga tttacctacc gataaggact aaaccatgca
     3901 ccccatcgaa acccccgaca agaccttcca cgacggcgac ggcgtgtccg aattgggcac
     3961 catcctgccc gcgtggtggc tcaaccaagt gcaatccgag ctgctggccg tgctgactgc
     4021 ggccggtatc cagccggata agtcgcagcc taatcaatta ctggcagcac taaataggct
     4081 ggctgtagtt atcaccggcg accaaaccat taccggccaa aaaaccttta ctgcccaaac
     4141 ccaattccaa agcggcatcc atttatccgc caaccagacg aactggaacg gcggccacaa
     4201 agcctacatc ggcgcggatg ccgacaacgc ccacatcgtc ttcggcgaca acaccctgcg
     4261 cctgcacggc gcaaacaacc gcatttccta caacaaccac gacatcttcc acaaagccaa
     4321 caaaccgcgt tttgccgaag acatcgaaag caagccgaac acactgtccg gatacggcat
     4381 ccgcaatttc aaagtcgaaa ccttccgggg cgatttgaac accctcaaaa cagacggcat
     4441 ctattccctg tcgacggcgg tcggcagctc caacctgccc attgaaaaca ccgcctgcca
     4501 tatccaagtc atcgccggca cgaaacacgg ctggtgcagg cagttgggtt atcccgccta
     4561 cacgtccgac gtgtacgaac gccaccaaac gagcagcgca aacgacaact ggtccgcatg
     4621 gaaaaaactc aattcggacg gcatccccgt cggcgcgatc gtatcctttc ccaaagccgt
     4681 ccgaaacccc gcaggctatc tcaaagccaa cggcacgacc tttgcacaaa acaccttccc
     4741 cgacctctac cgcgccctgg gcaacagcaa ccgcctgccc gatttaagcc gtaccgacat
     4801 cggcatcacc gcgtggtttc cgtccgacca aatcccgacc ggctggctgg cgtttgacga
     4861 catccgcacg cgcgtaaccg aaaccgctta tcccgagctg taccgtctgc tgaccggaaa
     4921 atacggcagc atccaaaacg tcccgcaggc ggaagaccgc tttatccgca acgcgggcaa
     4981 cagcttggca gtcggaacga agcaggaaga cgaaatcaaa cggcacgtcc acaaagtatt
     5041 ttcacactgg acaaaccaca cagacacggc agccgtcggt tacgaagacc gcaacgaaag
     5101 gcagagaagc gcgctcgtat cgacttggac ggacgaaaat ttaaacgaca acggcttttt
     5161 aaccccgcgc ccggacagca aaatggcgac aggcggcgac gaaaaccgcc ccaaagcctt
     5221 ggttttaaaa ctgtgcatca aagccgcaga caccttgggc gaagccgtgt tctggataaa
     5281 gtcccacggc gaaaccatca acgcaggcgc gctggacgcg ggcacgctgg cgcaaggttt
     5341 gcaagacaaa gccgaccgcg accacaccca caccgccgcc caaatccaag ggctggacga
     5401 aaaaatcagc accgccgttg ccgcgcaatt cacacgccaa accatcggcg gcgtggatat
     5461 tgtcagattc cccgacggca caatgataca gaccggcagc tacaggttca cacgaagcgg
     5521 cggccccatc gaaaacgaag tcgtcttccc cgtcgccttt gccgacggca acgtcaaatg
     5581 cttcgtatcc gaacgccatt cgggacgcgt taccggcgct cgaaggcaac acaactggct
     5641 gtttatccgc gcaaaaaacc acgccgccgc cattattacc aactggtacg aaggcagttg
     5701 cgactggatg gccatcggca aagccgcctc gggaaacgcc gccagctccc cgataggccc
     5761 cgaaatacct gaaaccaacg aagaaccgca aagagagagt ggaagaacat caaccggacc
     5821 ccgaaaccgc cgccgccgag acggcttgct cgaggcactg caagactagc gggctgtaga
     5881 gatggctgta gagatggctg tagagacggg ctgtagagat gggctgtaga gatgggcttc
     5941 agcccgccga tccaagcaat ccgaccgaaa ccggccgcgc cgccaatccc ccgaaaccta
     6001 tgccccgcca atcctgccac tcttcgtcat tcccgccgct ttcgtcattc ccgcgaaagc
     6061 gggaatccag cccccaaacg cggcaggaat ctatcggaaa aaacagaaac ccccgccacc
     6121 gtcattcccg cgcaggcggg aatccagacc ccgacgcaac aggaatctat cggaaaaaaa
     6181 cagaaacccc cgccgccgtc attcccgcga aagcgggaat ccagacccca aacgcggcag
     6241 gaatctatcg gaaacggctg aaaccgaacg gactggattc ccgcctgcgc gggaatgacg
     6301 gcggcagggg tttcgggatt cccgccttcg cgggaatgac ggaaagtggc gggaataacg
     6361 aaaggcggga atgaccgcgc aaaaagccgc tgcccccttc ggacggcacc ggcaacaaaa
     6421 aaccgcacgg ccgaaaccgc gcgggaaagg atagtcgggc gcgcccgata agcagcggcc
     6481 gcccccgtta tttcaattgg gcgacatatt ggcgcaaaac ctcgttgatg cgcgtctgcc
     6541 agcccttgcc gccggcgcgg aatttttcga ccacatcggc ggacaggcgt atggtaacga
     6601 gttgtttcgg ggttttgcct gtgtttcgtt tttgcattac gcccttttct tccaattgtt
     6661 tttgatggga aaaaagcacc tgtgccaagt cttcgggcag ggcttcggca atggggcggg
     6721 caagcgcaaa atcttcggcg gcaagttccc gcacttcgcc gtcagcgttt gttaaggatt
     6781 gacgttgcat attttttaac ctctctttta ttcgctttgc gaaaactgat gacacggatg
     6841 ccgtctttta tcggcgtaaa acagacaatg tgcaggcgtt gcgtatcgcc tagataagca
     6901 gcggcaacat aacgcggttc ggggtaatca aagcggacat cgggcacaat aacggccgtt
     6961 gtccagcgta tttgcccgac tgattcaaag ggcaaattcc gctcttcgat attgcgttga
     7021 tttttttcgg agtcaaattc aatcttcatt gcagcttgca gcgtattttg tcgttacatt
     7081 ataagcggca aaaaaccaaa atgtaaatac aaaaaaggaa accccgaaat gaccatctat
     7141 ttcaaaaacg gcttttacga cgacaccttg ggcagcatcc ccgaaggcgc ggttgccgtc
     7201 cgcgccgaag aatacgccgc ccttttggca ggacaggcgc agggcgggca gattgccgca
     7261 gattccgacg gccgccccgt tttaaccccg ccgcgcccgt ccgaatacca cgaatgggac
     7321 ggcaagaaat gggaaatcgg cgaagccgct gccgccgccc gtttcgccga acaaaaaacc
     7381 gccacggcat tccgcctcgc ggcaaaggcg gacgaactca aaaacagcct cttggcgggc
     7441 tatccccaag tggaaatcga cagcttttac aggcaggaaa aagaagccct cgcgcggcag
     7501 gcggacaaca acgccccgac cccgatgctg gcgcaaatcg ccgccgcaag gggcgtggaa
     7561 ttggacgttt tgattgaaaa agttgtcgaa aaatccgccc gcctggccgt tgccgccggc
     7621 gcgattatcg gaaagcggca gcagctcgaa gacaaattga acaccatcga aaccgcgcca
     7681 ggattggacg cgctggaaaa ggaaatcgaa gaatggacgc taaacatcgg ctgaaaaaat
     7741 acgtttacca cctgttggta gccatcgacc aactgttcaa cgccctaacc ggcggcgcgg
     7801 cggacgaaac cctctcaagc cgcacctatc gcggcgcgcg gctcgcccaa aagcccaaaa
     7861 cccgctggaa ggttttatac accctgatca acggcgtatt tttcgaccgc caacactgcc
     7921 ggcaggcgta tatcagcgaa ctgaaaggca ggcagcacga cgcgcggttc aaccaaagcc
     7981 gcgccgccgg ggaaaagggg acgcgatgaa ctacttcggc atggtagagt ttctgcgcct
     8041 gatggcaatg gtgcggccgc catttgtctt cttctccggc acccgcagcg aactgcctgc
     8101 ttatcttgac ctcgtggcag aactgcgcct gaccggatgg gagcgttttg caggcagcca
     8161 aaccttgact gtgagcagca catcaacagc aattcaagct acgacgacca cctgatttat
     8221 aagttctgac cgcaagtagc gtactacttt taaaggcata agataatccc cgtttaacag
     8281 accattaaac ggggataaat ttgtgcaaaa gctaatacaa tttcctacgc ttcggcggtg
     8341 caaaagctgc cgccaattcg tgcaaaagct gccgccgcct tacattccag tgcaatgccg
     8401 tctgaaactt cgctaatctc gggttgccgc gcgctgtgtt gttcttcggt actcagcaaa
     8461 aagccgtaca gacgctccaa tcgggcgcgg taggcggtga atttgttgta gaacatccgg
     8521 aagaaagaaa gcgcgttttg cagtcgcgcg aaggcttgga cggtctgctg gatgtcgccg
     8581 attttgattt gtccggcaaa caggcgcggc gcttgcaaaa taatggggaa gagcttgatg
     8641 ccgttggtga acatatcatt aaagccgctc aggcagacgc tttgtcgcgc aatacgccag
     8701 cggttgcgga taatggcttt aaaacggtca gaaagctggt cgtgttcgtg tttttcgccg
     8761 ctgtaaaacg ccacgctttc ggcgtggtcg cgcacgcgga taagggaata acggtagtcg
     8821 ccgttgagtt tttcgttttc atagttgtga cgaatcaatg ggttgcctat ccacatggcg
     8881 ataaaggtcg ccaaaatcac aaatatatag acaaaccaaa cgatgccgtg cggaatgtcg
     8941 aagccgaaca cggtcaggat gccagccaag ccccgcaaaa caacggcaaa ttccagagaa
     9001 gtaacgaccg aattgaccat gccgcgcaca aattcgatgg tcgaagcgat aaattcctgc
     9061 gcgtcctgtt ggatacgctg gtcgatgttg tccggcgcgt ggcggcgcat ttgcaggcgg
     9121 tagtagtttt tgtcggcaag ccagcgtgct gtcagcactt cgttgagccg ctccgaccat
     9181 ttaatcgcca agccttgatc gaggaagtcg ttgacgacgt tgttaaacgc ccgtatcagc
     9241 accacgcccg cgttcattgc ggcaaacatc caaaatgccg aagcatttca aatcctgcat
     9301 cgagtcgtaa agtcctttgg acataaaggt actcaacaca ttcagccgta cttcggtcaa
     9361 cagcagcgta atcatcgccg taatcagcag caagactttg accgcgcttt tcggagtcag
     9421 gcaaaggcgc aggatatggc tgaatgcgcg cccgaagcgc gttttgcgca cgacaaacag
     9481 aatcaccgct gaagcggcgg cgaccgtcaa taaggtctgc aacagccaag acggcgtgga
     9541 ataaagctcg gtttgccatt tctgcatggg aaatttctta cggtatcaat gccgtctgaa
     9601 aaagacgggt acagttgatt ttttgatgaa gtttggggaa gttttgccgg tcagggtaca
     9661 ttgcgt
//
LOCUS       DAXHPV010000064         9634 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.064, whole genome shotgun sequence.
ACCESSION   DAXHPV010000064 DAXHPV010000000
VERSION     DAXHPV010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9634)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9634)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9634
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.064"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(45..3077)
                     /locus_tag="ACFM6C_001139"
     CDS             complement(45..3077)
                     /locus_tag="ACFM6C_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015616 - DNA translocase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HFC6158599.1"
                     /translation="MFWIVLIVILLLALAGLFFVRAQSEREWMREVSAWQEKKGEKQA
                     ELPEIKDGMPDFPELALMLFHAVKTAVYWLFVGVVRFCRNYLAHESEPDRPVPPASAN
                     RADVPTASDGYSDSGNGTEEAETEEAEAAEEEAADTEDIATAVIDNRRIPFDRSIAEG
                     LMPSESEISPVRPVFKEITLEEATRALNSAALRETKKRYIDAFEKNETAVPKVRVSDT
                     PMEGLQIIGLDDPVLQRTYSRMFDADKEAFSESADYGFEPYFEKQHPSAFSAVKAENA
                     RNAPFRRHAGQAEAKSPDVSQGQSVSDGTAVRDACRRVSVNLKEPNKATVSAEARISR
                     LIPESRTVVGKRDVEMPSETENVFTETVSSVGYGGPVYDEAADIHIEEPAAPDAWVVE
                     PPEVPKVPMPAIDIPPPPPVSEIYNRTYEPPSGFEQAQRSRIAETDHLADDVLNGGWQ
                     EETAAIADDGSEGAAERSSGQYLSETEAFGHDSQAVCPFEDVPSERPSRRASDTEADE
                     GAFQSEETGAVSEHLPTTDLLLPPLFNPEATQTEEELLENSITIEEKLAEFKVKVKVV
                     DSYSGPVITRYEIEPDVGVRGNSVLNLEKDLARSLGVASIRVVETIPGKTCMGLELPN
                     PKRQMIRLSEIFNSPEFAESKSKLTLALGQDITGQPVVTDLGKAPHLLVAGTTGSGKS
                     VGVNAMILSMLFKAAPEDVRMIMIDPKMLELSIYEGIPHLLAPVVTDMKLAANALNWC
                     VNEMEKRYRLMSFMGVRNLAGFNQKIAEAAARGEKIGNPFSLTPDDPEPLEKLPFIVV
                     VVDEFADLMMTAGKKIEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRI
                     AFQVSSKIDSRTILDQMGAENLLGQGDMLFLPPGTAYPQRVHGAFASDEEVHRVVEYL
                     KQFGEPDYVDDILSGGGSEELPGIGRSGDGETDPMYDEAVSVVLKTRKASISGVQRAL
                     RIGYNRAARLIDQMEAEGIVSAPEHNGNRTILVPLDNA"
     gene            3242..3922
                     /locus_tag="ACFM6C_001140"
     CDS             3242..3922
                     /locus_tag="ACFM6C_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000041 - transition metal ion transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter permease"
                     /protein_id="HFC6158600.1"
                     /translation="MIFQTVWFSDMVLSVSWIVLILILAASAPSAFRSLARYRSALPL
                     CTVIFSAAWCLNASAGGGQLAQMNYHLLAVNLVALMVGTSAAFWLAALLMLSYCLLFA
                     GSAGAYPPNALVLILPALAVNRLSRMLVNRLPPNIFIFIFVNGFLASAAGILLTGLVL
                     TGILDAANAFPSEILWTTALPVFILLAWAEAFLSGISTAIFVALKPHWINTFDDNRYL
                     KSDRGIWR"
     gene            3951..4310
                     /locus_tag="ACFM6C_001141"
     CDS             3951..4310
                     /locus_tag="ACFM6C_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HFC6158601.1"
                     /translation="MLSNIIPLSIGAALGATARWLLNLAVPASLSPATGNLFANWTGA
                     LLIGIFAETVNHPQWKLLLITGFLGSLTTLSGFSLETVTLLQSNRPASALANIFLHTA
                     GSLLLTWLGLKIGTAVK"
     gene            complement(4442..4861)
                     /locus_tag="ACFM6C_001142"
     CDS             complement(4442..4861)
                     /locus_tag="ACFM6C_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158602.1"
                     /translation="MISIFKAYYDVYEFNGELLKRCIFLDEENNEIIKDRIYEYLIYV
                     LTGDLYLQKDIDENLEFIHQAENNPNEVYSGGGQGFCWDISAEKVVFYNNEFDEEDGW
                     PDLSCSLHTFKTTLIAWNAFLQLPKSIHSVVETVIEE"
     gene            complement(5350..5886)
                     /locus_tag="ACFM6C_001143"
     CDS             complement(5350..5886)
                     /locus_tag="ACFM6C_001143"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HFC6158603.1"
                     /translation="MDLREVKLGGETIYEGGFVSISRDKVRLPNGNEGQRIVIRHPGA
                     ACVLAVTDDEKVVLVRQWRYAANQATLELPAGKLDVAGEDMAACALRELAEETPYVAD
                     SVRLLYSFYTAVGFCNEKMYLFEAEGVRLGSTLANDEDEITETVLMSKEEVRQALAND
                     EIKDGKTLIGLQYWLMKD"
     gene            complement(5920..6276)
                     /gene="folB"
                     /locus_tag="ACFM6C_001144"
     CDS             complement(5920..6276)
                     /gene="folB"
                     /locus_tag="ACFM6C_001144"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004150 - dihydroneopterin aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006760 - folic acid-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HFC6158604.1"
                     /translation="MDKIFLHGIKADTLIGVYGWERERLQTLIVDLDIGVPEKAGSDD
                     DIANTVHYAEVCETLRRHLKEQDFLLLEALAEYIADLVLGYFGAVWVRVKIVKPGILE
                     GVREVGVEIERGKRED"
     gene            6332..6934
                     /gene="plsY"
                     /locus_tag="ACFM6C_001145"
     CDS             6332..6934
                     /gene="plsY"
                     /locus_tag="ACFM6C_001145"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008374 - O-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HFC6158605.1"
                     /translation="MFNIPAVAVSYLIGSLSFAVIVSKYYGMDDPRTYGSGNPGATNV
                     LRSGKKKAAALTLLGDAAKGLIAVLLARVLQEPLGLSDSAIAAVALAALVGHMWPVFF
                     GFKGGKGVATALGVLLALSPATALVCALIWLVMAFGFKVSSLAALTATIAAPLAALFF
                     MPHLSWIWATLLIALLVLFRHKSNISNLLKGKEGKIGEKR"
     gene            complement(6953..7078)
                     /locus_tag="ACFM6C_001146"
     CDS             complement(6953..7078)
                     /locus_tag="ACFM6C_001146"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158606.1"
                     /translation="MFEHIGVVAGVECVSVTEHGMKAVCAEMPSERGNMVSDGMT"
     gene            7022..7867
                     /locus_tag="ACFM6C_001147"
     CDS             7022..7867
                     /locus_tag="ACFM6C_001147"
                     /EC_number="2.1.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008988 - rRNA
                     (adenine-N6-)-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HFC6158607.1"
                     /translation="MLSYRHAFHAGNHADMLKHFTLFLVLQYFNKKDKPYWYIDTHGG
                     AGLYNLEGSEAQKVGEYRQGIALLRQAQNLPAELSDFAAHIQKILPSPELYCGSPWLA
                     QSLTRVGDKLRLFELHPTDFVHLQNNMGEAGLGKRGQVLREDGYKELISLLPPPPRRA
                     TVLIDPPYEEKQDYRRVTETLKAALKRFESGCYLIWYPCLSREESRKLPEELKKLLPD
                     NYLHAELHVHAPKADGFGMHGSGMFVINPPYLLAEQLAANLPALTRLLAQDEGARYLL
                     DSKIR"
     gene            8113..9087
                     /locus_tag="ACFM6C_001148"
     CDS             8113..9087
                     /locus_tag="ACFM6C_001148"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HFC6158608.1"
                     /translation="MDTLTRFLPEHLQQNQLPEALGGVLLSVVSACTEINAKVRLGAL
                     AGVLGMAGTGNIQGEDQKKLDVIANNIMIDTLKANPAVAGLASEEEDSFVSAGENGRY
                     LVLFDPLDGSSNIDVNISVGTIFSILEKPEGALATESFLQTGRQQLAAGYVLYGPQTQ
                     LVFTLGHGVYVFTLNTENEFVLTKENPKVPESTKEFAINMSNRRHWLPPVQQYIDELL
                     AGETGTRGKNYNMRWVASMVAEIHRILMRGGVFMYPQDKRDPAKPGKLRLMYEANPMS
                     LILEQAGASASNAYQAMLDIQPENLHQRVAVFMGSSEEVAYLDRLHAK"
     gene            complement(9230..9448)
                     /locus_tag="ACFM6C_001149"
     CDS             complement(9230..9448)
                     /locus_tag="ACFM6C_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HFC6158609.1"
                     /translation="MFPEYRDLISKLKQENSRFARLFDEHNELDDKITGLVNNPVTSG
                     AETIDELKKAKLKLKDELYAILQKAAGK"
BASE COUNT         2277 a         2807 c         2174 g         2376 t
ORIGIN      
        1 gccgtctgaa acagtcttca gacggcattt ccatttgcaa aaaatcaagc attgtccaag
       61 gggacgagaa tcgtacggtt gccgttgtgt tccggtgcgg acacaatgcc ttccgcctcc
      121 atctggtcaa tcagacgcgc ggcgcggttg tagccgatgc gcaaggcgcg ctgtacgccc
      181 gaaatactgg ctttgcgcgt tttcaggaca acggatacgg cttcatcata catcggatcg
      241 gtttcgccgt cgccgctgcg cccgatgccg ggcagctctt cgctgccgcc gccgctcaaa
      301 atatcgtcaa catagtccgg ctcgccaaac tgtttcaaat attcgaccac gcggtgcacc
      361 tcttcatccg aggcaaacgc gccgtgaacg cgctgcggat aggcagtacc cggcggcagg
      421 aacagcatat cgccctgacc gagcaggttt tccgcgccca tttggtcgag aatcgtgcgg
      481 ctgtcgattt tgctggacac ttggaacgcg atacgcgtcg ggatgttcgc cttaatcaga
      541 cccgtgatga catcgacgct ggggcgttgt gtggcaagaa tcaaatggat gcctgccgcg
      601 cgggcttttt gggcgaggcg ggcaatcagt tcctcgattt tcttgcctgc cgtcatcatc
      661 aaatcggcaa actcatcgac cacgaccacg ataaacggca gtttttccaa aggttcggga
      721 tcgtcgggcg tgaggctgaa cggattgccg attttttctc cccttgctgc ggcttcggcg
      781 attttttgat tgaagcccgc aagattacgc acgcccataa agctcatcag gcggtagcgt
      841 ttttccattt cgttaacaca ccagttcagc gcgtttgccg ccagcttcat atcggtaacg
      901 acaggggcga gcaggtgcgg gatgccttcg taaatgctca attccagcat tttcggatcg
      961 atcataatca tacgcacgtc ttccggcgcg gctttgaaaa gcatagacag aatcatcgcg
     1021 ttgacaccca ccgatttgcc cgaaccggtc gtgccggcaa ccaataaatg cggtgctttg
     1081 cccaagtcgg ttacaacggg ctgtccggtg atgtcctgac cgagcgcgag cgtcagcttg
     1141 gatttggatt cggcaaactc gggcgaattg aagatttcgc tcaggcgtat catttgacgt
     1201 ttcgggttcg gaagttccaa acccatacag gttttgccgg ggatggtttc gacaacgcgg
     1261 atggaagcca cgccgagcga acgcgccaag tctttttcca gatttagaac ggaattgccg
     1321 cgcacgccga catcgggttc gatttcataa cgcgtaatca cggggccgga ataagaatcg
     1381 acaaccttga ccttgacttt gaactccgcc aatttttctt cgatggtgat gctgttttcc
     1441 aacagttctt cttcggtttg cgtcgcctcg ggattgaaca gcggcggcag aagcaggtcg
     1501 gttgtcggca ggtgttcgga taccgcaccg gtttcttccg attggaacgc cccttcatcc
     1561 gcttccgtat ccgatgcccg gcgggacggg cgttcagacg gcacatcttc aaacggacaa
     1621 accgcctgac tgtcatgccc gaacgcttcg gtttccgaca gatattgccc gcttgaccgc
     1681 tctgccgcac cctcactgcc gtcatccgca atagcggcgg tttcctcctg ccaacctcca
     1741 ttcaaaacat catcggcaag atggtcggtt tcggcaatgc ggctgcgttg cgcctgctcg
     1801 aatcctgacg gcggttcata ggtacggttg tagatttccg atacgggagg tggcggcgga
     1861 atatcgattg cgggcatggg aactttcggc acttcgggtg gttcgaccac ccaagcatcg
     1921 ggcgcggcag gttcttcaat atggatatcg gcagcttcat cataaaccgg accgccgtat
     1981 cccacagacg aaacggtttc cgtgaaaaca ttttcggttt cagacggcat ttcgacatcc
     2041 cgtttcccga caaccgtccg actttccgga atcaggcgcg aaatccgcgc ctccgcagaa
     2101 accgttgcct tgttcggttc tttcaaattg acggaaacgc ggcggcaggc atcgcggacg
     2161 gctgtgccgt ctgaaacgga ctgcccttgg gaaacatccg gggattttgc ctccgcctgc
     2221 cctgcatgac ggcggaacgg cgcattccgt gcattttcgg ctttgactgc agaaaaggca
     2281 gacggatgct gcttctcaaa atacggctca aatccgtaat ccgcagactc ggaaaacgct
     2341 tctttgtccg catcgaacat acgggaatac gtgcgttgaa gcacagggtc gtccaaaccg
     2401 ataatctgca gcccttccat cggggtatcg gacacgcgga ctttggggac cgctgtttcg
     2461 tttttctcaa atgcatcgat atagcgtttt ttcgtttccc ttaaagccgc gctgtttaaa
     2521 gcacgcgttg cttcttccaa agtgatttcc ttaaaaaccg gacggacggg cgaaatttcg
     2581 ctttcagacg gcatcaaccc ttcagcaata ctccggtcga atgggatgcg gcggttgtcg
     2641 attacggcag ttgcaatgtc ttccgtatcg gcagcctctt cctccgcagc ttctgcttct
     2701 tccgtttccg cttcttccgt cccgtttcca ctgtctgaat atccgtcgga tgcggtcgga
     2761 acatccgcac ggtttgcaga agcaggcgga acgggcctgt ccggttcgga ttcgtgcgcc
     2821 agatagtttc ggcagaaacg gacgacaccg acaaacagcc aatacactgc cgttttgacg
     2881 gcatggaaaa gcatcagggc aagttcggga aaatcgggca taccgtcttt gatttcaggc
     2941 agctccgcct gtttttcccc tttcttttcc tgccacgcag aaacctcgcg catccactcg
     3001 cgttcggatt gtgcgcggac aaaaaacaag ccggcaagcg caagcaacaa aataacgatc
     3061 aaaactatcc aaaacatatg ccgtttcccg caagacaaac gattaaacgg gtttatttta
     3121 acgtgtttcc atcccaaaaa aaacaaccgg tcggcaattc tgccgaaacc gattcggctt
     3181 tcggtttgcc cccgccgaca gtataatagc cgtcctttcc cttaatcttt gcggcattgc
     3241 catgattttc caaacagtct ggttttcaga tatggtactg tcggtttcgt ggattgtcct
     3301 tatcctgata ctggcagctt ccgcgccgtc cgcattccgc tcgcttgccc gctaccgttc
     3361 tgcccttccc ctgtgtaccg taattttttc cgcagcatgg tgtctgaacg cctctgccgg
     3421 cggcggacag cttgcccaga tgaactacca cctgctcgcc gtcaatctgg ttgcactgat
     3481 ggtgggcact tccgccgcct tttggcttgc cgcgctgctg atgctgtcct actgcctgct
     3541 gtttgccggt tctgccggcg catatccgcc gaacgcttta gtgctgattc tgcccgcgct
     3601 tgccgtcaac cgcctgtcgc gtatgctggt caaccgcctg ccgcccaata ttttcatctt
     3661 tattttcgtc aacggctttc tcgcttccgc cgccggcatt ctgttgaccg ggctggtgct
     3721 gaccggtatt ttggatgctg caaacgcttt tccgtccgaa atattgtgga cgaccgccct
     3781 gcccgtcttt attctgctgg cgtgggcgga agccttcctc agcggcattt caactgccat
     3841 atttgttgca ctgaagcccc attggattaa cactttcgac gacaaccgct atcttaagtc
     3901 cgaccgcggc atatggcggt agccttcaga cggcatagac aggcaaaacc atgctttcca
     3961 acatcatccc cctttccatc ggtgcggcac tcggtgcaac ggcgcgttgg ctgctcaacc
     4021 tcgccgttcc cgcatcgttg tctcccgcca cgggcaacct gtttgccaac tggacgggcg
     4081 cgctgctcat cggcatcttt gccgaaaccg tcaaccatcc gcaatggaag ctgctgctga
     4141 ttaccggttt tctcggcagc ctgaccacgc tttccggatt ttcactggaa accgtaaccc
     4201 tgctccaatc gaatcgtcct gcttcagcac ttgccaatat tttcctgcac acggcaggtt
     4261 cgctgctgct gacttggctc gggctgaaga tagggacggc agtcaaataa tcaaaaaaat
     4321 tgcttccttt ggttttgaca caaactatac aagtcctaac atcttaatca tggcgcagca
     4381 tataagcgtg gatttgcagc ccaatctata ctttctgatt ctattcatta agccattatg
     4441 cttattcctc aatcacggtt tccaccactg aatgaatact tttaggcaat tgcaaaaaag
     4501 cattccaagc aattaaagta gttttaaaag tatgcagcga acagcttaaa tcaggccagc
     4561 cgtcttcttc atcaaattcg ttgttataga aaactacttt ttcagcagaa atatcccagc
     4621 aaaaaccttg tccacctcct gaataaactt cattgggatt attttctgct tgatggataa
     4681 attctaaatt ttcatctatg tctttttgta gataaaggtc tcctgttaaa acataaatta
     4741 agtattcata tattctatct ttaattattt cattattttc ttcatctaaa aatatacatc
     4801 tttttaatag ttccccatta aattcataaa catcgtaata agctttaaaa atagatatca
     4861 tatcatttcc ttatcttcca taaatcggct tcggttgttt aaataccgcc cgtgccaatt
     4921 accgttctca aattcaaatt gggcttttag gtctataaca aagaaaaagc cttggcagga
     4981 taaacctacc aaggcttttt attaaaaaaa cgctctatta ctgtgtctaa aaatgcaaaa
     5041 aaagtaacca tcataaccct tttgccaaaa tcaatatcat catccgatga atgaattgac
     5101 ggtatataag aaagaattaa taagctcata aaccggtaag aaaaatcagt aacaaagata
     5161 ttcattatta actattctta aaaatgatca cgttcgtttg ggtaattatc agcccatacc
     5221 ataccctact cctattacta aagcacgaat gactttaaag gacgcgccca gagacaagcc
     5281 gaaaaggcat atctcatccg ccaaacaaaa tgcccgccga cttactccgg caggcagttc
     5341 aacaccctgt caatccttca tcagccagta ttgcaaaccg attaatgtct tgccgtcttt
     5401 aatttcatcg tttgccaatg cctgacggac ttcttctttc gacatcaata cggtttccgt
     5461 aatctcgtct tcgtcattgg caagcgtact gcccaagcgc acgccttccg cctcgaacag
     5521 atacattttt tcattgcaaa aaccgaccgc cgtataaaag ctgtacagca ggcgcacgct
     5581 gtcggcaaca taaggtgttt cctccgccaa ttctcgcagc gcacacgctg ccatatcctc
     5641 gcctgccaca tccagcttgc ccgcaggaag ttccaaggtc gcctgatttg ccgcataacg
     5701 ccactgccgc accaaaacga ccttttcatc atccgttacc gccaacacgc acgccgcgcc
     5761 cggatgacgg atgacgatac gctgcccttc attgccgttg ggcaacctga ccttatccct
     5821 gctgatactg acgaaaccgc cctcgtaaat ggtttcgccg cctaatttta cttccctcaa
     5881 atccacttca tatctccttt ccgtttccta ttctgccgtt caatcttcac gcttgccgcg
     5941 ctcgatttcc acgccaacct cgcgcacgcc ttccaaaata cccggcttga cgattttcac
     6001 gcgcacccac accgcgccga aatatcccaa aaccaaatcg gcaatatatt ccgccaacgc
     6061 ttccaaaagc aggaaatcct gttctttcag atgtcggcgc aatgtttcgc atacctcggc
     6121 ataatgcacc gtattggcaa tatcgtcgtc cgaacccgct ttctcgggaa cgccgatgtc
     6181 caaatcgaca atcagggtct gcaaccgttc gcgttcccag ccgtacacgc cgataagcgt
     6241 atccgccttg atgccgtgca aaaagatttt atccataatc cgccccgttt tttgctaaaa
     6301 taaccgcacc attctaagta aagtaccaca aatgttcaac ataccggctg ttgccgtttc
     6361 ctatctgatc ggctcacttt ctttcgccgt catcgtttcc aagtattacg ggatggacga
     6421 cccgcgcacc tacggatcgg gcaatcccgg cgcgaccaat gttttacgca gcggcaaaaa
     6481 aaaggcagcc gcgctgacgc tcttgggcga tgccgccaaa ggtttgattg ccgttttgct
     6541 tgcacgcgtg cttcaagaac cgctcggttt atccgacagc gcaatcgctg ccgtcgcact
     6601 cgccgcgctg gtcgggcata tgtggccggt gtttttcgga tttaagggcg gcaaaggcgt
     6661 ggcaacggca ttgggcgtgc ttttggcact ctctcccgca actgccttgg tctgcgcgtt
     6721 gatttggctt gttatggcat tcggcttcaa ggtgtcctcc cttgccgcat taaccgccac
     6781 aatcgccgcc ccccttgctg cgctgttttt tatgccccac ctttcttgga tttgggcgac
     6841 gctccttatc gccctgctgg tgttgttccg ccacaaaagc aatatcagca acctgcttaa
     6901 aggcaaagaa ggcaaaatcg gcgaaaaacg ctgattcggc atttgttttc cattacgtca
     6961 tgccgtctga aaccatattt ccgcgttcag acggcatttc cgcacaaacg gctttcatac
     7021 catgctcagt tacagacacg cattccacgc cggcaaccac gccgatatgc tcaaacattt
     7081 caccttgttt ttagtgctgc aatatttcaa caaaaaagac aagccctact ggtacatcga
     7141 cacgcacggc ggcgcgggtt tgtacaatct cgaaggcagc gaggcacaaa aagtcggcga
     7201 ataccggcaa ggcatcgccc tgctccgaca ggcgcaaaac ctgcctgccg aactctctga
     7261 ctttgccgcg cacatacaaa aaatcctgcc ctcgcccgaa ctttactgcg gttctccgtg
     7321 gctggcgcaa tcgctgaccc gcgtcggcga caaattacgc ctgtttgagc tgcaccccac
     7381 cgactttgtc catctgcaaa acaatatggg cgaagcagga ttgggcaaac gcggacaagt
     7441 gttgcgcgaa gacggttaca aagagctgat ttccctgctg ccgcccccgc cgcgccgcgc
     7501 caccgtcctc atcgacccgc cctatgagga aaaacaggac taccggcgtg taacggaaac
     7561 gctgaaagcc gctttaaaac ggtttgagtc cggctgttat ctcatttggt atccctgcct
     7621 cagccgcgaa gaaagccgca agctgcccga agaattgaaa aaactcctgc ccgacaacta
     7681 ccttcacgcc gaacttcacg tccacgcgcc gaaagccgac ggtttcggta tgcacggcag
     7741 cggaatgttc gtcatcaatc cgccctatct gttggcggaa caattggcgg caaacctccc
     7801 cgccctgacg cggctgctgg cgcaagacga aggcgcgcgc taccttttgg acagcaaaat
     7861 ccgctgaccc cgatgccgtc tgaaaccctt cagacaacat ctcccgtcaa ataaacaaaa
     7921 ccggacgata taccggcagt cggcactttt aagaataaat atcccctcat ccgcctgccg
     7981 cgttccgact tgccccatgc cgttttttta cactacaatc ccctagacta tcctgcaaaa
     8041 cgcaccaaag gaatacgcca caataacctg ccgcctttca gacggcacaa acctttccga
     8101 aacgagcaaa ctatggacac actgacccga ttcctccccg aacacctgca acaaaaccag
     8161 ctgcccgaag cactcggcgg cgttttactg tccgttgttt ccgcctgcac cgaaatcaac
     8221 gccaaagtcc gcctcggcgc actggccggc gtattgggta tggcgggcac gggcaatatt
     8281 cagggcgaag accaaaaaaa actggatgtt atcgccaaca acatcatgat tgacacactc
     8341 aaagccaacc ctgccgttgc cggtttggca agcgaggaag aagactcttt cgtaagtgcc
     8401 ggtgaaaacg gacgctatct cgtcctattc gaccctttag acggatcgtc caatattgat
     8461 gtcaacattt ccgtcggtac gattttctcc atccttgaaa aacccgaagg cgcattggca
     8521 accgaatcat tccttcaaac gggcagacag cagcttgccg caggctatgt cctctacggg
     8581 cctcaaaccc agctcgtatt cacactcgga cacggcgtgt acgtgtttac actcaatacc
     8641 gaaaacgaat ttgtcctgac caaagaaaac ccgaaagtac ccgaaagtac caaagaattc
     8701 gccatcaata tgtccaaccg ccgccactgg ctgccccccg tccaacaata catagacgag
     8761 ctcttggcgg gcgaaactgg cacgcgcggc aaaaactaca atatgcgctg ggtagccagc
     8821 atggttgccg aaatccaccg catcctgatg cgcggcggcg tgttcatgta tccgcaagac
     8881 aaacgcgacc ccgccaagcc cggcaaactg cgcctgatgt acgaagccaa ccctatgagc
     8941 ctgatactcg aacaggcggg cgcatcggca agcaacgcat atcaagccat gctcgacata
     9001 cagcccgaaa acctgcacca acgcgtcgcc gtcttcatgg gcagcagcga agaagtcgcc
     9061 tatctcgacc gcctgcacgc aaaatagaca gacagccgtt cacacaagta cacggcggcg
     9121 gcaatccgat accgccgccg ttatttcaaa cagcacaagc cttccggtca aatgacaaaa
     9181 atgccgtccg aacacatttc agacggcatt tcaaaaactc aaacccgaat tattttcccg
     9241 ctgctttttg caggatggcg tacaactcgt ctttcagttt caatttggct tttttcagct
     9301 catcgatggt ttccgcaccg ctggtaaccg gattgttgac cagaccggta attttatcgt
     9361 ccagctcgtt gtgttcgtcg aacagacggg cgaagcggga attttcctgt ttcaatttgg
     9421 aaatcaaatc acggtattct gggaacatat cgctttcctc tcttggttta cggttaataa
     9481 agtcaaactg aatctttaca ttaattataa caaagataat atttttatcc agtattttat
     9541 cggatacggc aaaattttct tttaacaccg ccgtccggtt gataaaaacg ttgacaatat
     9601 cacgctttac gcataaattt tcagcctttc ctac
//
LOCUS       DAXHPV010000065         9401 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.065, whole genome shotgun sequence.
ACCESSION   DAXHPV010000065 DAXHPV010000000
VERSION     DAXHPV010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9401
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.065"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(133..1413)
                     /locus_tag="ACFM6C_001150"
     CDS             complement(133..1413)
                     /locus_tag="ACFM6C_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme-like NAD(P)-binding protein"
                     /protein_id="HFC6158610.1"
                     /translation="MENSLKEAALKFHELPVPGKISVTPTKSLATDKDLALAYSPGVA
                     APCMEIHADPQNAYKYTAKGNLVAVISNGTAVLGLGDIGALAGKPVMEGKGVLFKKFA
                     GVDVFDIEIDEKDPQKLVDIIAALEPTFGGINLEDIKAPECFYIERELRKRCKIPVFH
                     DDQHGTAIITAAAVLNALRFTGRKIEEATLVCSGAGAAAIACLNQLLDLGLKRENVTV
                     CDSKGVIYQTREDKDRMDESKQFYAIEDNGQRVLADAVKGKDIFLGLSGANLLTPEML
                     NTMNEKPIVFAMANPNPEILPPLAKETRPDVVIGTGRSDFPNQVNNVLCFPFIFRGAL
                     DVGATTINEEMKRACVYALADLAMEEVTEEVVAAYGKKFEFGAEYLIPTPFDSRLLPR
                     VATAAAKAAMESGVATRPIADFEAYAAKLGEWKL"
     gene            complement(1635..2255)
                     /gene="tmk"
                     /locus_tag="ACFM6C_001151"
     CDS             complement(1635..2255)
                     /gene="tmk"
                     /locus_tag="ACFM6C_001151"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006233 - dTDP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HFC6158611.1"
                     /translation="MKPQFITLDGIDGAGKSTNLAVIKAWFERRGLPVLFTREPGGTP
                     VGEALREILLNPETKAGLRAETLMMFAARMQHIEDVILPALSDGIHVVSDRFTDATFA
                     YQGGGRGMPSEDIEILEHWVQGGLRPDLTLLLDVPLEVSMARIGQTREKDRFEQEQAD
                     FFMRVRGVYLDRAAACPERYAVIDSNRNLDEVRNSIEKVLDGHFGC"
     gene            complement(2315..3310)
                     /gene="mltG"
                     /locus_tag="ACFM6C_001152"
     CDS             complement(2315..3310)
                     /gene="mltG"
                     /locus_tag="ACFM6C_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HFC6158612.1"
                     /translation="MLRKLLKWSAVFLTVSAAVFAALLFVPKDNGRAYRIKIAKNQGI
                     SSVGRKLAEDRIVFSRHVLTAAAYVLGVHNRLHTGTYRLPSEVSAWDILQKMRGGRPD
                     SVTVQIIEGSRFSHMRKVIDATPDIEHDTKGWSNEKLMAEVAPDAFSGNPEGQFFPDS
                     YEIDAGGSDLRIYQTAYKAMQRRLNEAWESRQDGLPYKNPYEMLIMASLVEKETGHEA
                     DRDHVASVFVNRLKIGMRLQTDPSVIYGMGAAYKGKIRKADLRRDTPYNTYTRGGLPP
                     TPIALPGKAALDAAAHPSGEKYLYFVSKMDGTGLSQFSHDLTEHNAAVRKYILKK"
     gene            3394..3966
                     /gene="ampD"
                     /locus_tag="ACFM6C_001153"
     CDS             3394..3966
                     /gene="ampD"
                     /locus_tag="ACFM6C_001153"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HFC6158613.1"
                     /translation="MDNHAEAHWQDGWLQSVRHIPSPNFGPRESKEEVSLVVLHNISL
                     PPFEYGTDAVEKLFANRLDPDGHPFFSLIHTLRVSSHFLIKRDGETVQFVSCDNMAYH
                     AGVSSFRGREKCNAFSIGIELEGCDFEPFTEAQYRSLEALLDAICRRYPITAVTGHQD
                     IAPGRKTDPGHFFDWRRIRGKGFPVDRNAV"
     gene            4160..5446
                     /locus_tag="ACFM6C_001154"
     CDS             4160..5446
                     /locus_tag="ACFM6C_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0090529 - cell septum assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA C-terminal
                     FtsZ-binding domain-containing protein"
                     /protein_id="HFC6158614.1"
                     /translation="MIYIVLFLAAVLAVVAYNMYQENQYRKKVRDQFGHSDKDALLNS
                     KTSHVRDGKPSGGPVMMPKPQPAVKKTAKPQDPAMRNLQEQDAVYIAKQKQAKASPFK
                     TEIETVLEESGIIDNSAHTVSEPQTGHSAPKPADAPAKPVPVPQTPAKPLITLKELSK
                     VELPWFDVRFDFISYIALTEAKELHALPRLSNRCRYQIVGCTMDDHFQIAEPIPGIRY
                     QAFIVGIQAVSRNGLASQEELSAFNRQVDAFAQSMGGQTLHTDLAAFIEVASALDAFC
                     ARVDQTIAIHLVSPTSISGVELRSAVTGVGFVLEDDGAFHYTDTSGSTMFSICSLNNE
                     PFTNALLDNQSYKGFSMLLDIPHSPAGEKTFDDLFMDLAVRLSGQLNLNLVNDKMEEV
                     STQWLKDVRTYVLARQSEMLKVGIEPGGKTALRLFS"
     gene            5594..8119
                     /gene="ligA"
                     /locus_tag="ACFM6C_001155"
     CDS             5594..8119
                     /gene="ligA"
                     /locus_tag="ACFM6C_001155"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HFC6158615.1"
                     /translation="MNPNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEY
                     YTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQRVGGEPLAGFAEVRHEVPML
                     SLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL
                     VQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQ
                     AENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQQDGFVAEEHIQELAYF
                     QELGFSLPNGNFGCFKNIDEVLAFYGHMQQKRPELPYEIDGMVVKVNSLAQQHELGFI
                     SRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQ
                     DEVSRKDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDGIGHRQDDLFAEA
                     PAANQTQSVPLYKPYRLPTHCPICRSEIEREEGEAVARCSGGMLCQAQRAQGLIHFAS
                     RKAMDIDGLGEKQIEQLVAQDLVRHFADLYRLDIPTLQKMKETADKTVAESDQTPSED
                     SSVGASGKHKKQPTKWAENILAGIESGKTPELARFLFALGIRHVGERTAKTLAQAFGT
                     LERVRRAPEPVLACLPDIGTVVARSIAHFFAQAEQQAMIDELLAAGVAPQAQAVSLPT
                     AQYAEPQRWIARLPGFKISENKAQALWELAGKNIEGLQTDKALPTDWQAWRSETQNAA
                     LLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQALIEAAGGK
                     VSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLLG"
     gene            8176..9351
                     /gene="hemW"
                     /locus_tag="ACFM6C_001156"
     CDS             8176..9351
                     /gene="hemW"
                     /locus_tag="ACFM6C_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HFC6158616.1"
                     /translation="MHAISFPNRTRLTALPPLSLYIHIPWCIKKCPYCDFNSHSLKNG
                     LPEAAYIDALLTDLQLELPNIWGRPVETIFFGGGTPSLFQAESIDRLLSGVRSLLRLQ
                     PEAEITLEANPGTFEIEKFQGFKDAGITRLSIGVQSFNDDMLSRLGRVHNGKEALTAI
                     DTALKLFDKVNIDLMYALPNQTVQTALDDVQTAIATGATHISAYHLTMEPNTPFGHTP
                     PKGLPQDEAALDIEDAVHGALENAGFIHYETSAFAQNNKQCRHNLNYWQFGDYLGIGA
                     GAHGKISYPDRIERTVRRRHPNDYLALMQSQPSEAVERKTVAAEDLPFEFMMNALRLT
                     DGVPAAMLQERTGVPSAKIMAQIETARQKGLLETDPTVFRPTEKGRLFLNDLLQCFL"
BASE COUNT         2227 a         2838 c         2359 g         1977 t
ORIGIN      
        1 aatcggttcc gtactatttg tactgtctgc agcttcgtcg ccttgtcctg atttttgtta
       61 atccactata tcaatctgac agcaaaatac cgcctgaaaa cagttcagac ggcattttaa
      121 accgcaaacg gcttacagct tccattcgcc cagcttggcg gcgtaggctt caaagtcggc
      181 aatcggacgg gttgccacgc cgctttccat cgctgctttg gcggcagccg tagcaacgcg
      241 cggcagcagg cgggaatcga acggagtcgg aatcaggtat tccgcgccga attcaaattt
      301 cttaccgtaa gcggcaacca cttcttcggt cacttcttcc atcgccaaat ccgccaaagc
      361 atacacgcag gcgcgtttca tttcttcgtt gatggtggtc gcgccgacat ccaacgcgcc
      421 acggaagatg aacgggaagc acaatacatt gttgacttgg ttcgggaagt cggaacggcc
      481 ggtaccgata accacgtccg gacgggtttc ttttgccagc ggcggcagaa tttccggatt
      541 cgggttggcc atggcgaaca cgatgggttt ttcgttcatg gtgttcagca tttcaggcgt
      601 cagcaggttc gcgccggaga ggcccaagaa gatgtctttg cctttgacgg catcggcaag
      661 cacgcgctgg ccgttgtctt caatggcgta gaactgttta gactcatcca tgcggtcttt
      721 gtcttcgcgg gtttggtaaa tcacgccttt ggagtcgcaa acggtcacgt tttcgcgttt
      781 caagcccaaa tccagcaatt ggttcaagca ggcaatcgcg gccgcacctg cgccggaaca
      841 caccaaagtc gcttcttcga ttttacggcc ggtaaaacgc agggcgttca atacggcggc
      901 ggcggtaatg atggccgtgc cgtgctggtc gtcgtggaat acggggattt tgcagcgttt
      961 gcgtaattcg cgttcgatgt agaaacactc gggtgctttg atgtcttcga ggttgatgcc
     1021 gccgaaggtc ggctctaaag cggcgatgat gtccacgagt ttttgcgggt ctttttcatc
     1081 gatttcgatg tcgaacacgt ccacaccggc gaattttttg aacaatacgc ctttgccttc
     1141 catcacgggt ttgcccgcca gcgcgccgat gtcgcccaag cccaaaacgg ccgtaccgtt
     1201 ggaaatgaca gcgaccaagt tgcctttggc ggtgtatttg taggcatttt gcggatcggc
     1261 atggatttcc atacaaggag cggctacgcc cggagagtac gccaacgcca aatctttgtc
     1321 ggtcgccaga gatttggtcg gggtaacgga aattttgccc ggaacgggta attcgtggaa
     1381 cttgagggcg gcttctttca atgagttttc catgtgtcaa tcctgttgcg agaaaaagat
     1441 ttgaatcgga ctgtccgaaa cgctttcggg tcatcatgtt acgggcggtt cgttaatatt
     1501 gccgacgcat cctgccttgt aaccgagcgt aattctatca tgccgaaagt ttggcgcata
     1561 ccgccatttt cacctgcggc actgccgttt gattttcggc gcgggcggat gcgcttgttt
     1621 caatatttgc cgcatcagca gccgaaatgt ccgtccaaca ctttttctat gctgtttctg
     1681 acttcatcca agttgcggtt actgtcgata acggcgtacc gttcgggaca ggcggcggct
     1741 cggtcgagat aaacgccgcg cacacgcata aagaaatccg cctgctcctg ctcgaaacgg
     1801 tctttctcgc gcgtctgccc gatacgcgcc atcgacactt cgagtggcac atccaacagc
     1861 agggtcaaat cggggcgcaa accgccctgc acccaatgtt ccaaaatttc aatgtcttca
     1921 gacggcatcc cccgcccgcc gccctgatag gcgaaggttg catcggtaaa acggtcggac
     1981 acgacatgga tgccgtctga aagtgcaggc aatatcacgt cttcaatatg ctgcattctg
     2041 gcggcgaaca tcatcagtgt ttccgcacgc aaaccggctt tggtttcagg gttgagcagg
     2101 atttcgcgca aagcctcacc gaccggcgtt ccgcccggct cgcgcgtgaa cagcacgggc
     2161 agccccctcc gttcaaacca tgccttgatg acggcaaggt tggtggattt gccggcaccg
     2221 tctatgccgt ccaaagtgat gaattgcggt ttcatgcttg cagttccggt aagggtatgc
     2281 cgtctgaaaa cacaaacttt tcagacggca tggtttattt tttcaaaata tatttgcgga
     2341 cggcggcatt gtgttcggtc aaatcatggc tgaactggct caagcccgta ccgtccattt
     2401 tagaaacaaa ataaaggtat ttttcgccag acggatgggc ggcggcatca agcgcggcct
     2461 tgccgggcag cgcaatcggg gttggcggca gaccgccgcg cgtgtaggtg ttgtacggcg
     2521 tgtcgcggcg caggtcggct ttacggattt tgcccttgta tgccgcaccc atgccgtaaa
     2581 tcacggacgg gtcggtttgc agacgcatac cgattttcag ccggttgacg aagacggaag
     2641 cgacatggtc gcggtcggct tcatgccccg tttccttttc gaccaggctc gccataatca
     2701 gcatttcata aggattttta taaggcagcc cgtcctgcct gctttcccat gcctcattca
     2761 ggcggcgttg catcgccttg taggcggttt ggtaaatccg taaatcgctg ccgcccgcat
     2821 cgatttcgta gctgtcgggg aaaaactgcc cttcaggatt gccgctgaag gcatcagggg
     2881 caacttccgc catcagtttt tcattgctcc agcctttggt gtcgtgttcg atgtcgggcg
     2941 ttgcgtcgat gactttcctc atatgcgaaa aacgcgaacc ttcgataatc tgcacggtaa
     3001 cggaatccgg cctgccgccg cgcattttct gcaagatatc ccaagcagac acttccgaag
     3061 gcaatctgta cgtccccgta tgcagcctgt tgtgcacacc caaaacgtag gccgccgccg
     3121 tcaaaacatg cctgctgaac acgatgcggt cttcggcaag tttcctgccg accgacgaaa
     3181 taccctggtt tttggcaatt ttgattcggt atgccctgcc gttatcctta ggaacaaaaa
     3241 gcagcgcggc gaaaacggct gccgacacgg tcaaaaaaac ggcagaccat ttcaacaatt
     3301 ttctcaacat ggtaggattc ccagcattcg gaatacgtct taaaattcgg gcgacagtat
     3361 aacccaaatt gcccgccgga caggaagaac atcatggaca atcacgccga agcacactgg
     3421 caggacggtt ggctgcaaag cgtgcgccac attccgtcgc cgaatttcgg cccgagggag
     3481 tccaaagaag aggtttccct tgtcgtattg cacaatatct cgctgccgcc gttcgaatat
     3541 ggtacggatg cggtggaaaa gctgtttgcc aaccggctcg accccgacgg acatccgttc
     3601 ttcagcctga tacacacttt gcgcgtatcc agccattttt taatcaaacg cgacggcgaa
     3661 acggtacagt tcgtttcctg cgacaatatg gcataccatg ccggcgtatc ctcgtttcgc
     3721 ggacgggaaa aatgcaacgc attttccatc ggcatcgaac tggaaggctg cgatttcgaa
     3781 ccctttaccg aagcgcaata ccgttcgctc gaagccttgt tggacgcaat ctgccgccgc
     3841 taccccatca cggcggtaac ggggcaccaa gacatcgcgc ccggccgcaa aaccgacccc
     3901 ggtcattttt tcgactggcg gcggatacgg gggaaagggt ttcccgtgga cagaaatgcc
     3961 gtctgaaaac cacagatttt agacggcatt tcggaaaatt tccgcttatt tcgacacact
     4021 gctgtcagac cctgcaattt tcgttataat tcaaacgtta taaccggccg ttccgtcaga
     4081 ctgccggaaa cgcaagcccg atttaaccgc agtacccgca ctttgcgcat cctgcatccc
     4141 gaaatttaaa gtgattgcca tgatttacat cgtactgttc ctcgccgccg tcctcgccgt
     4201 tgtcgcctac aatatgtatc aggaaaacca ataccgcaaa aaagtgcgcg accagttcgg
     4261 gcactccgac aaagatgccc tgctcaacag caaaaccagc catgtccgcg acggcaaacc
     4321 gtccggcggg ccagtcatga tgccgaaacc ccaaccggcg gtcaaaaaaa cggcaaaacc
     4381 ccaagacccc gccatgcgca acctgcaaga gcaggatgcc gtctacatcg ccaagcagaa
     4441 acaggcaaaa gcctccccgt tcaaaaccga aatcgaaacc gtcttggaag aaagcggcat
     4501 tatcgacaac tccgcccaca ccgtttccga accccaaacc ggacattccg caccgaaacc
     4561 tgccgacgcg ccggcaaaac ccgttcccgt tccgcaaacg ccggcaaaac cgctgattac
     4621 gctcaaagaa ctgtcaaaag tcgaattacc ctggtttgac gtgcgcttcg acttcatctc
     4681 ctatatcgcg ctgaccgaag ccaaagaact gcacgcactg ccgcgccttt ccaaccgctg
     4741 ccgctaccag attgtcggct gcaccatgga cgaccatttc cagattgccg aacccatccc
     4801 gggcatccgc tatcaggcat ttatcgtggg tattcaggca gtcagccgca acggacttgc
     4861 ctcgcaggaa gaactctccg cattcaaccg ccaggtggac gcattcgcac aaagcatggg
     4921 cggtcagacg ctgcacaccg accttgccgc ctttatcgaa gtggcttccg cactggacgc
     4981 attttgcgcg cgcgtcgacc agaccatcgc catccatttg gtttccccga ccagcatcag
     5041 cggcgtagaa ctgcgttccg ccgtaacggg cgtgggtttc gttttggaag acgacggcgc
     5101 gttccactat accgacacgt cgggctcgac catgttctcc atctgctcgc tcaacaacga
     5161 gccgtttacc aatgcccttt tagacaacca gtcctacaaa ggcttcagta tgctgctcga
     5221 catcccgcac tctcctgcag gcgaaaaaac cttcgacgat ttgtttatgg atttggcggt
     5281 acgcctgtcc ggccagttga acctgaatct ggtcaacgac aaaatggaag aagtttcgac
     5341 ccaatggctc aaagacgtac gcacttatgt attggcgcgt cagtccgaga tgctcaaagt
     5401 cggtatcgaa ccgggcggca aaaccgccct gcgcctgttc tcctaaaatc gaatgcaatc
     5461 aaagcggata tgtcgttacg gcatatccgc tttttttcgg gtaaaattca gctgttttca
     5521 acctatcatt tttcagacga cctttgcccg tttcatcccg tatcagacaa aggtcgtctg
     5581 aaaaccttct ctcatgaatc caaactcaaa acataacact aactttacca atcttcttaa
     5641 accgtctgat agtgatataa aacaatttgc cgcacaacac atccgccacc tcaccgacct
     5701 gctcaaccgc tatgcctacg aatactacac cctcgacgcg cccagcgtac ccgatgccga
     5761 atacgacaaa ttattccgcg aactcgaagc gttggaatta aaccatcccg agctcaaact
     5821 gcccgacagc ccgacccagc gcgtcggcgg cgagcctttg gcaggctttg ccgaagtgcg
     5881 ccacgaagtg ccgatgctgt cgctgaccaa cgctttttcc ccgcaagatg aaaacggcgt
     5941 gttcgaccat gccgaaatgt acgctttcga ccaacgcgtg cgcgacggtt tggacggcgg
     6001 caatcccgaa tacgttatcg aacccaaatt cgacggcctc gccatcagcc tgctctaccg
     6061 cgacggcgta ttggtgcagg cggcaacgcg cggcgacggc acaacgggcg aagacgttac
     6121 ccaaaacatc aaaaccgtat ccaacatccc cttgcggcta cacggcgaaa atacgcccga
     6181 actcatcgaa gtacgcggcg aagtactgat gcaaaaagcc gattttgccg ccctcaataa
     6241 aagacaagcc gaaaacgggc aaaaaccctt tgccaatccg cgcaacgccg ctgccggcag
     6301 cctgcgccaa ctcgattcgc gcatcactgc gcaacgcaaa ctgcactttt tcccctactc
     6361 cgtcgcccgc cagcaagatg gtttcgtcgc ggaagaacac atccaggaac tcgcctattt
     6421 ccaagaactc ggcttcagtc tgcccaatgg caatttcggc tgtttcaaaa atatcgatga
     6481 agtattggcg ttttacggac acatgcagca aaaacgcccc gaactgccct atgaaatcga
     6541 cggcatggtc gtcaaagtca acagcttggc gcaacagcac gaactcggct tcatctcccg
     6601 cgcgccgcgc tgggcgattg cccacaaatt ccccgccgaa gaagccctga ccattgtcga
     6661 agcgattgac gtgcaaatcg gcaggacggg cgcggtaacg ccggttgccc gcctgcagcc
     6721 cgtattcgtc ggcggcgtaa ccgttaccaa cgccaccctg cacaatcagg acgaagtatc
     6781 gcgtaaagac gtgcgcgtcg gcgataccgt cgtcgtgcgc cgcgccggag acgtgattcc
     6841 cgaagtcgtg cgtgtgattt ttgaacgccg cccgatgcag gaaaccgccg ttgctgtttc
     6901 agacggcatc gggcatcggc aggacgattt gtttgccgaa gcaccggctg caaaccaaac
     6961 ccaatccgtt ccgctctaca agccctaccg cctgccgacc cactgcccca tctgccgcag
     7021 cgaaatcgaa cgcgaagaag gcgaagccgt cgcccgatgc agcggcggca tgctttgtca
     7081 ggcacaacgc gcgcaaggct taatccactt cgcctcgcgc aaagcgatgg acatcgacgg
     7141 cttgggtgaa aaacaaatcg aacagcttgt cgcccaagac ctcgtccgcc acttcgccga
     7201 cctctaccgc ctcgatattc cgaccctgca aaaaatgaag gaaacggcgg acaaaaccgt
     7261 tgccgaatcg gatcaaacgc cgtctgaaga cagttcggtc ggcgcgtcgg gcaaacataa
     7321 aaaacaaccg accaagtggg cggaaaacat cctcgcaggc atagaatccg gcaaaacacc
     7381 cgaactcgcc cgcttcctgt tcgcgctcgg catccgccac gtcggcgaac gcaccgccaa
     7441 aacgctggca caggcattcg gcacattgga acgcgtccgc cgcgcccccg aacccgtcct
     7501 cgcctgcctg cccgacatcg gtacggtagt ggcgcgttcc attgcccact tcttcgccca
     7561 agccgaacag caggcgatga tagacgagct gctcgccgca ggcgttgccc cgcaagccca
     7621 agccgtcagc ctgcctaccg cacaatatgc cgaaccgcaa cgctggattg cccgcctgcc
     7681 cggtttcaaa atcagcgaaa acaaagccca agccttatgg gaactcgccg gcaaaaacat
     7741 agaagggctg caaaccgaca aagccctccc caccgactgg caggcgtggc gcagcgaaac
     7801 acaaaacgcc gccctgctcg aaaacctgaa aaccttcttc gcgcaaatgc cgtctgaaga
     7861 tgaggcggcg caaggttcag acggcatcaa taaagccgtg gcgggcaaaa ccttcgtgtt
     7921 aaccggcaca ctgcccaccc tcaaacgcga ccaagcccaa gccctaatcg aagccgcagg
     7981 cggcaaagtt tccggcagcg tttccaaaaa aaccgattac gtcgtcgccg gagaagccgc
     8041 gggcagcaag ctggaaaaag ccaatgcctt gggcgtttcc gtcctcagtg aagccgaact
     8101 gcttaccctg ctcggctgaa cctgtgccgt ctgaaccgcc ttcagacggc attgtccact
     8161 tttccgaacc acaccatgca cgccatttcc tttccaaacc gcacccggct caccgccctg
     8221 ccgcccctgt cgctctatat ccacatcccg tggtgcatca aaaaatgccc gtattgcgac
     8281 tttaattccc acagcctgaa aaacggattg cccgaagccg cctatatcga cgcgctgctg
     8341 accgacttgc agcttgaatt gcccaatatt tggggcaggc cggtggaaac gatatttttc
     8401 ggcggcggta cgcccagcct gtttcaggcg gaatcgattg accgtttatt gagcggcgtg
     8461 cgttcgctgt tgcgcttgca gcccgaagcg gaaattacct tggaagccaa tccggggaca
     8521 tttgaaatcg agaagtttca aggatttaaa gacgcaggca tcacgcggct ttctatcggc
     8581 gtacagagtt tcaacgacga tatgctctca aggctggggc gcgtccacaa cggcaaggaa
     8641 gccttaaccg ctatcgatac cgccttaaaa ttatttgata aagtcaatat cgacttgatg
     8701 tacgccctac cgaaccaaac cgttcagacg gcattggacg acgtacaaac cgccatcgct
     8761 acgggtgcga cccacatcag cgcgtatcat ctgacgatgg aaccgaacac gccgttcggt
     8821 catacgccgc cgaaaggttt gccgcaagac gaagccgccc tcgacatcga agacgcggta
     8881 cacggcgcat tggaaaacgc cggctttatc cattacgaaa catcagcctt cgcacaaaac
     8941 aacaaacaat gccgccacaa tttgaactac tggcagttcg gcgattattt gggcatcggc
     9001 gcgggcgcgc acggcaaaat ctcctatccc gaccgcatcg agcgcaccgt ccgccgccgc
     9061 caccccaacg actacctcgc cttaatgcaa agccaaccga gtgaagccgt cgaacgcaaa
     9121 accgttgccg ccgaagattt gccgttcgaa ttcatgatga acgccctgcg cctgaccgac
     9181 ggcgtacccg ccgcgatgtt gcaggagcgt acgggcgtac cgagtgccaa aatcatggcg
     9241 caaatcgaaa cggcaaggca aaaaggcctg ctggaaaccg acccgaccgt attccgcccg
     9301 accgaaaaag gacgcttgtt tttaaacgat ttgctgcaat gttttttata gtggattaac
     9361 aaaaaccagt acggcgttgc ctcgccttag ctcaaagaga a
//
LOCUS       DAXHPV010000066         9297 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.066, whole genome shotgun sequence.
ACCESSION   DAXHPV010000066 DAXHPV010000000
VERSION     DAXHPV010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9297)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9297)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9297
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.066"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(113..2503)
                     /gene="gyrB"
                     /locus_tag="ACFM6C_001157"
     CDS             complement(113..2503)
                     /gene="gyrB"
                     /locus_tag="ACFM6C_001157"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HFC6158617.1"
                     /translation="MTEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMV
                     FEVLDNAIDEALAGHCDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVL
                     HAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKV
                     VGDSDKKGTTVRFLASTETFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGKHES
                     FALSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNI
                     PQRDGGTHLTALRQVMTRTINSYIETNEVAKKAKVETAGDDMREGLTCVLSVKLPDPK
                     FSSQTKDKLVSGEIGPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAR
                     EITRRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLK
                     GKILNVEKARFEKMLASQEVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAH
                     IRTLLLTFFYRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEK
                     AKIISDGRTIEGAELADTAKQFLLAKTVIEQESRFVDELVLRAMLHASPIDLTSSENA
                     DKAVAELSGLLDEKEVALERIEGHEGHRFIKITRKLHGNVMVSYIEPKFLNSKAYQTL
                     TQTAAALKGMVGEGAKLYKGENGYDADSFETALDILMSVAQKGMSIQRYKGLGEMNPE
                     QLWETTMDPAVRRLLKVRIEDAIAADEVFVTLMGDEVEPRRAFIENNALIAQNIDA"
     gene            2773..3645
                     /locus_tag="ACFM6C_001158"
     CDS             2773..3645
                     /locus_tag="ACFM6C_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HFC6158618.1"
                     /translation="MEIWNMLDTWLGAVPIRAEAVESVAAVAALLLARALLLNIHFKR
                     HPDFGIESKRRFLVASRNITLLLVLFSLAFIWSAQIQTLALSMFAVAAAVVVATKELI
                     MCLSGSILRSATQQYSVGDYIEINGLRGRVVDINLLNTLMMQVGPNPLVGQLAGTTVS
                     FPNSLLLSHPVRRDNILGDYVIHTVEIPVPIHLDSDEAVCRLKAVLEPLCAPYIPAIQ
                     RHLENVQAEKLFITPAARPRVTRVPYDDKAYRIIVRFASPVSKRLEIQQAVMDEFLRV
                     QYRLLNYPAGSETL"
     gene            3733..5799
                     /locus_tag="ACFM6C_001159"
     CDS             3733..5799
                     /locus_tag="ACFM6C_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HFC6158619.1"
                     /translation="MTDNALLHLGEEPRFDQIKTEDIKPALQTAIAEAREQIAAIKAQ
                     THTGWANTVEPLTGWANTVEPLTGITERVGRIWGVVSHLNSVTDTPELRAVYNELMPE
                     ITVFFTEIGQDIELYNRFKTIKNSPEFDTLSPAQKTKLNHDLRDFVLSGAELPPEQQA
                     ELAKLQTEGAQLSAKFSQNVLDATDAFALYFDDAAPLAGIPKDALAMFAAAAQSEGKT
                     GYKIGLQIPHYLAVIQYADNRELREQIYRAYVTRASELSDGGKFDNTANIDRTLANAL
                     QTAKLLGFKNYAELSLATKMADTPEQVLNFLHDLACRAKPYAEKDLAEVKAFARERLN
                     LADPQPWDLGYAGEKLREAKYAFSETEVKKYFPVSKVLAGLFAQIKKLYGIGFTEKTV
                     PIWHKDVRYFELQQNGETIGGVYMDLYAREGKRGGAWMNDYKGRRRFADGTLQLPTAY
                     LVCNFTPPVGGKEARLSHDEILTLFHETGHGLHHLLTQVDELGVSGINGVEWDAVELP
                     SQFMENFVWEYNVLAQMSAHEETGVPLPKELFDKMLAAKNFQRGMFLVRQMEFALFDM
                     MIYSEDDEGRLKNWQQVLDSVRKKVAVIQPPEYNRFALSFGHIFAGGYSAGYYSYAWA
                     EVLSADAYAAFEESDDVAATGKRFWQEILAVGGSRSAAESFKAFRGREPSIDALLRHS
                     GFDNAA"
     gene            complement(6405..7919)
                     /gene="katA"
                     /locus_tag="ACFM6C_001160"
     CDS             complement(6405..7919)
                     /gene="katA"
                     /locus_tag="ACFM6C_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase KatA"
                     /protein_id="HFC6158620.1"
                     /translation="MTTSKCPVTHLTMNNGAPVADNQNSLTAGPRGPLLAQDLWLNEK
                     LADFVREVIPERRMHAKGSGAFGTFTVTHDITKYTRAKIFSEVGKKTEMFARFTTVAG
                     ERGAADAERDIRGFALKFYTEEGNWDVVGNNTPVFFLRDPRKFPDLNKAVKRDPRTNM
                     RSATNNWDFWTLLPEALHQVTIVMSDRGIPAGYRHMHGFGSHTYSFWNEAGERFWVKF
                     HFRTQQGIKNLTNEEAAKIIADDRESHQRDLYEAIERGEFPKWTMYIQVMPEADAEKV
                     PYHPFDLTKVWPKKDYPLIEVGEFELNRNPENFFADVEQSAFAPSNLVPGVGASPDKM
                     LQARLFNYADAQRYRLGVNFRQIPVNRPRCPVHSNQRDGQGRADGNYGSLPHYEPNSF
                     GQWQQQPDFAEPPLKINGDAAHWDYRQDDDDYFSQPRALFNLMNDAQKQALFGNTAAA
                     MGDAPDFIKYRHIRNCYRCDPAYGEGVAKALGLTVEDAQAARATDPALGQPGLL"
     gene            8267..9117
                     /locus_tag="ACFM6C_001161"
                     /pseudo
     CDS             8267..9117
                     /locus_tag="ACFM6C_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218621.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase subunit sigma"
BASE COUNT         2028 a         2591 c         2525 g         2153 t
ORIGIN      
        1 aaatgctgac catggttttg ctccgaaagg cggtttcaga cggtatggct tccgtttgac
       61 caaccaaaaa ggagacgcgg cacgatgccc gtctcctttt ttaaaacggc acttatgcgt
      121 cgatattttg ggcaatcagc gcgttgtttt cgataaaggc acggcgcggc tcgacctcgt
      181 cgcccatcag cgtaacgaac acttcgtcgg cggcaatggc atcttcgatg cgcactttca
      241 acaggcggcg cacggcggga tccatcgtgg tttcccacag ctgctcgggg ttcatctcgc
      301 ccaagccttt gtatcgttgg atggacatac ctttttgggc aacgctcatc aagatgtcca
      361 aagcggtttc aaagctgtcc gcgtcgtacc cgttttcgcc tttgtaaagc ttggcaccct
      421 cgccgaccat gcctttgagc gcggcggcgg tttgggtgag ggtttggtag gctttgctgt
      481 tgaggaactt gggttcgatg tagctgacca tgacgttgcc gtgcagcttg cgcgtgattt
      541 tgatgaaccg gtgtccttca tgaccttcga tgcgttcgag ggcgacttct ttttcgtcaa
      601 gcagaccgga aagttcggca acggctttat cggcgttttc agacgacgtc aaatcaatgg
      661 gcgacgcgtg tagcatggcg cgcaggacga gttcgtctac gaagcggctt tcctgttcga
      721 tgacggtttt tgccaacagg aattgtttgg cggtgtcggc aagttctgcg ccttcgatgg
      781 tgcggccgtc tgaaatgatt ttggcttttt ccaaggcaag accgagcagc cattggtctt
      841 tttccaactc gtccttgagg taacgttcct gtttgccgta tttcgcttta tacaaaggcg
      901 gctgggcgat atagatgtag ccgcgctcga ccagttcggg catttggcgg tagaagaagg
      961 tcaaaagcaa ggtgcggata tgcgcgccgt ccacatcggc atcggtcatg ataatgatgc
     1021 ggtggtaacg cagcttctcg gcattgaatt cttccttgcc gatgcccgcg cccaacgcgg
     1081 taatcaaagc ggctacttcc tgactggcga gcattttttc aaagcgcgct ttttcgacgt
     1141 tcaaaatctt gcccttaagc ggcaaaatcg cttggaattt gcggtcgcgc ccctgcatgg
     1201 cggaaccgcc tgcagaatcg ccctcgacca gataaagttc tgacaatgcg gggtcttttt
     1261 cttggcagtc ggcgagtttg ccgggtagcc ccaagccgtc catcacgcct ttgcggcggg
     1321 tgatttcgcg ggctttgcgg gcggcttcgc gcgcgcgggc ggcatcgacg attttgccgg
     1381 tgatgatttt ggcttcggca gggttttctt cgaggaagtc ggtcagggct tggctgatga
     1441 cttcgttgac gacgggaccg atttcgccgg aaaccagttt gtctttggtt tgggacgaaa
     1501 atttggggtc gggcagtttg acggacaaca cgcaggtcaa accttcgcgc atatcgtcgc
     1561 cggcggtttc cactttggct tttttggcga cttcgttggt ttcgatgtag ctgttgatgg
     1621 tgcgcgtcat cacttggcgc aacgcggtca ggtgcgtacc gccgtcgcgc tgagggatgt
     1681 tgttggtgaa gcactgcacg ctttcctgat agctgtcgtt ccattgcatc gcgcattcga
     1741 cgctcatgcc gtctttctcg ccgaacgcgt agaagatttt ttcgtgcaag ggcgtttttt
     1801 tgcggttcat gtattgcacg aatccagcca cgccgccgga aagggcgaag ctttcgtgtt
     1861 tgccgtcgcg ctcgtcggtc aattcgatgt ccacgccgtt gttcaggaac gaaagttcgc
     1921 ggatgcgttt ggcaaggatg tcgaagctgt attcgacgtt gccgaaggtt tccgtactgg
     1981 cgaggaagcg cacggtcgtg ccttttttat cggaatcgcc gacaaccttc agcggctctt
     2041 cggtttcgcc gcgcacgaag cggacgaagt gttctttgcc gtcgcggtag atggtcagcg
     2101 ttacccagtc ggacagcgcg ttgacgacgg acacgcccac gccgtgcagg ccgccggaga
     2161 ttttgtagct gttgttgtcg aatttaccgc ccgcgtgcaa tacggtcatg atgacttcgg
     2221 cggcggagcg tccttctttc gggtggatgc cggtgggcat accgcgcccg ttgtcggcga
     2281 cgctgacgga atggtcggcg tgtatcgtta ccgtgatttt gtcgcaatgt ccggcgagtg
     2341 cttcgtcaat ggcgttgtcc aatacttcaa acaccatatg gtgcagaccg ctgccgtcct
     2401 gcgtgtcgcc gatgtacatg ccggggcgtt tgcgtaccgc ttccaagcct tcgagcacct
     2461 gaatgctgtc ggcgccgtat tcttcgtgtt tttgttcagt catatttttt gccggatttt
     2521 gaaaagattt tgcgatgccg ccaaaacaag tccgcacctt gtggaaaaag cgggcgggac
     2581 ggcatatata attgtgtatt atagccgatt ttgccgccta attcagcgtt atccgcatca
     2641 gtgtgccgcc gggaaaagat gaaacggtac gtttgcctcc ggcatcaggt cggggatttt
     2701 cccgtaaagt ggcaaaagca tttttttgcc actaaaatct acaccctata cttttcggac
     2761 aggggcgcgg aaatggaaat atggaatatg ttggacactt ggctcggtgc cgtcccgata
     2821 cgtgcggagg cggtcgaatc cgtggcggcg gttgcggctt tgctgctggc gcgcgccctt
     2881 ctgttgaata tccacttcaa acggcatccg gatttcggca tcgaaagcaa gcggcggttt
     2941 ttggttgcca gccgcaatat aacgctgctt ttggtgctgt tttcgctggc atttatctgg
     3001 tcggcgcaaa tccaaacgct ggctttgtcg atgtttgcgg tggcggcggc ggtcgtcgtg
     3061 gcgacgaagg aactgattat gtgtctgtcg ggcagtattt taaggtctgc cacccagcaa
     3121 tactcggtcg gcgactatat cgaaatcaac ggcctgcgcg ggcgcgtggt cgacatcaac
     3181 ctgttgaaca cgctgatgat gcaggtcggt ccgaacccct tggtcggaca gcttgcggga
     3241 accaccgttt ctttccccaa cagcctgttg ttgagccacc ccgtgcgccg cgacaatatt
     3301 ttgggcgact atgtcatcca tacggtcgaa atccccgttc ccatccattt ggattcggat
     3361 gaagccgtat gccgtctgaa agccgtactc gagcccttgt gcgcgcccta catccccgcc
     3421 atccaacggc atttggaaaa cgtgcaggcg gaaaaactgt ttatcacgcc cgccgccaga
     3481 ccgcgcgtta cccgcgtgcc gtacgatgac aaggcatacc gcatcatcgt ccgcttcgcc
     3541 tcccccgttt caaagcggct ggaaatccaa caggcggtta tggacgaatt tttgcgcgta
     3601 caataccgcc tgttaaatta ccccgccggc tccgaaacac tttaactttc cctgaccgac
     3661 cccatttccg gcttcagacg gcatattgcc gatatgctgt ctgaagcaca acacgcaaag
     3721 gaaacccatc ttatgactga caacgcactg ctccatttgg gcgaagaacc ccgttttgat
     3781 caaatcaaaa ccgaagacat caaacccgcc ctgcaaaccg ccattgccga agcgcgcgaa
     3841 caaatcgccg ccatcaaagc ccaaacgcac accggctggg caaacactgt cgaacccctg
     3901 accggctggg caaacactgt cgaacccctg accggcatca ccgaacgcgt cggcaggatt
     3961 tggggcgtgg tgtcgcacct caactccgtc accgatacgc ccgaactgcg cgccgtctat
     4021 aacgaactga tgcccgaaat caccgtcttc ttcaccgaaa tcggacaaga catcgagctg
     4081 tacaaccgct tcaaaaccat caaaaattcc cccgaattcg acaccctctc ccccgcacaa
     4141 aaaaccaagc tcaaccacga cctgcgcgat ttcgtcctta gcggcgcgga actgccgccc
     4201 gaacagcagg cagaactggc aaaactgcaa accgaaggcg cgcaactttc cgccaaattc
     4261 tcccaaaacg tcttagacgc aaccgacgcc ttcgccctct acttcgacga tgccgcaccg
     4321 cttgccggca ttcccaaaga cgcgctcgcc atgtttgccg ccgccgcgca aagcgaaggc
     4381 aaaacaggct acaaaatcgg tttgcagatt ccgcactacc tcgccgtcat ccaatacgcc
     4441 gacaaccgtg aactgcgcga acaaatctac cgcgcctacg ttacccgcgc cagcgaactt
     4501 tcagacggcg gcaaattcga caacaccgcc aacatcgacc gcacgctcgc aaacgccctg
     4561 caaaccgcca aactgctcgg cttcaaaaac tacgccgaat tgtcgctggc aaccaaaatg
     4621 gcggacaccc ccgaacaagt tttaaacttc ctgcacgacc tcgcctgccg cgccaaaccc
     4681 tacgccgaaa aagacctcgc cgaagtcaaa gccttcgccc gcgaacgcct gaacctcgcc
     4741 gacccgcagc cgtgggactt gggctacgcc ggcgaaaaac tgcgcgaagc caaatacgca
     4801 ttcagcgaaa ccgaagtcaa aaaatacttc cccgtcagca aagttctggc gggcctgttc
     4861 gcccaaatca aaaaacttta cggcatcgga tttaccgaaa aaaccgtccc catctggcac
     4921 aaagacgtgc gctattttga attgcaacaa aacggcgaaa ccataggcgg cgtttatatg
     4981 gatttgtacg cacgcgaagg caaacgcggc ggcgcatgga tgaacgacta caaaggccgc
     5041 cgccgcttcg ccgacggcac gctgcaactg cccaccgcct acctcgtctg caacttcacc
     5101 ccgcccgtcg gcggcaaaga agcgcgtttg agccacgacg aaatcctcac actcttccac
     5161 gaaaccggac acggcctgca ccacctgctt acccaagtcg acgaactggg cgtatccggc
     5221 atcaacggcg tagaatggga cgcagtcgaa ctgcccagcc agtttatgga aaatttcgtt
     5281 tgggaataca atgtcttggc gcaaatgtcc gcccacgaag aaaccggcgt tcccctgccg
     5341 aaagaactct tcgacaaaat gctcgccgcc aaaaacttcc aacgcggcat gttcctcgtc
     5401 cgccaaatgg agttcgccct ctttgatatg atgatttaca gcgaagacga cgaaggccgt
     5461 ctgaaaaact ggcaacaggt tttagacagc gtgcgcaaaa aagtcgccgt catccagccg
     5521 cccgaataca accgcttcgc cttgagcttc ggccacatct tcgcaggcgg ctattccgca
     5581 ggctattaca gctacgcgtg ggcggaagta ttgagcgcgg acgcatacgc cgcctttgaa
     5641 gaaagcgacg atgtcgccgc cacaggcaaa cgcttttggc aggaaatcct cgccgtcggc
     5701 ggctcccgca gcgcggcaga gtccttcaaa gccttccgcg gacgcgaacc gagcatagac
     5761 gcactcttgc gccacagcgg cttcgacaac gcggcttgat cgatgtgaac aaaaaatgcc
     5821 gtctgaaaca atcaaacagt gtttcagacg gcatcagcat ttgcgcggtt tcgccatttt
     5881 cacaaaaaca gtaagccaaa atcccgtcat tcccgcgcag gcgggaatcc aggtctgtcg
     5941 gtgcggaaac ttatcgggaa aaacggtttc tttagatttt acgttctaga ttcccacttt
     6001 cgtgggaatg atgggatttt ggtttccgtg cggatggatt cgtcattccc gcgcaggcgg
     6061 gaatccagag ttgtcggtgc agaaacttat cgggaaaaac ggtttcttta gattttacgt
     6121 tctagattcc cgctttcgcg ggaatgacgc ggaaaagttt tcgtgccggt ttgaaccggt
     6181 ggggatggtg cgggaatgac ggcggaaaag tgggctgtgg ggcgggaatg acgggatatt
     6241 ttgcgtttaa taaaaaacgc ccactgaaac ggcgggggcg ggatggggaa atgccgtctg
     6301 aaacggtcaa acgacgtttc agacggcatt tttatgcccg gttatttccg gtagcggacg
     6361 gcgcgggaca ggatttcttc aatttccatc cacataatgc ccccttacag caaaccgggc
     6421 tggccgagtg cggggtcggt cgcgcgggcg gcttgtgcgt cttcgacagt caatccgagg
     6481 gcttttgcca cgccttcacc gtatgccgga tcgcaacggt agcagttgcg gatatggcgg
     6541 tatttgatga agtcgggcgc gtcgcccatt gcggcggcgg tgttgccgaa caatgcctgt
     6601 ttctgcgcgt cgttcatcag gttgaacagg gcgcgcggtt ggctgaagta gtcgtcatca
     6661 tcttggcggt agtcccagtg tgccgcgtcg ccgttgattt tcaaaggcgg ttcagcgaag
     6721 tcgggctgct gctgccattg tccgaagctg ttgggttcgt agtgcggcag gctgccgtag
     6781 ttgccgtcgg ctctgccttg tccgtcgcgc tggttgctgt gaacagggca acgcggacgg
     6841 ttgacaggga tttggcggaa gttcacgccc aagcggtagc gttgcgcgtc ggcgtaattg
     6901 aacaaacgcg cctgcaacat tttatctggg ctggcgccga caccgggaac gaggttgctc
     6961 ggtgcgaagg cggattgttc cacatcggcg aagaagtttt cgggattgcg gttcaactcg
     7021 aattcgccca cttcaatcag cggatagtct tttttcggcc aaactttggt caggtcaaac
     7081 ggatgataag gtactttttc ggcatcggct tcgggcatca cttggatgta catcgtccat
     7141 ttcggaaact cgccgcgttc gatggcttcg tataagtcgc gctgatggct ttcgcggtcg
     7201 tcggcgatga ttttggcggc ttcttcgttg gtcaggtttt taatgccttg ttgggtgcgg
     7261 aaatggaatt tcacccaaaa acgctcgcct gcttcgttcc agaagctgta ggtatgcgaa
     7321 ccgaagccgt gcatatggcg gtagccggcg gggatgccgc ggtcgctcat cacgatggta
     7381 acttggtgca gtgcttcggg cagcagcgtc cagaagtccc agttgtttgt ggcagagcgc
     7441 atattggtgc gcgggtcgcg tttgacggct ttgttcaggt cggggaactt acgcgggtcg
     7501 cgcaggaaga acacgggcgt gttgttgccg accacatccc agttgccttc ttcggtatag
     7561 aacttcaacg caaaaccgcg gatgtcgcgt tctgcatcgg ctgcgccgcg ttcgcctgcc
     7621 acggtggtga aacgggcgaa catctcggtt tttttgccga cttcgctgaa gattttggcg
     7681 cgggtgtatt tggtgatgtc gtgcgttacg gtaaacgtac cgaacgcgcc cgaacctttg
     7741 gcgtgcatac ggcgttcggg gatgacttcg cgcacgaagt cggcgagttt ttcattcagc
     7801 cacaaatcct gcgccagcag agggccgcga ggaccggcgg tcaggctgtt ttgattgtcg
     7861 gcaacaggcg cgccgttgtt catggtcaga tgggttacag ggcatttgga ggtagtcatc
     7921 gctcttgttc cttttctcag gttggtcaaa tgggggtaaa cggcttacag tacgatttgg
     7981 cggaaagcgt attcgtaacc ggtttcttga ttgcaataaa tttcttgaat cgacatttta
     8041 tttccctttt gtaaaaacta tggatgcgac tatacgccaa gattttcgct attaaaacta
     8101 tgaaatcgat ttaatattat tataagcaat cggttcttga ttttcgtttg ttttttgtta
     8161 tcgaacggaa tccgaacccg ctcattaaaa ccatttataa tgcaatgacg ctttgcggca
     8221 ttttttgcgc cgacaggctg aaaataacaa ttttccccac attatcatga ccttactcgg
     8281 atataagctc aaacagaccc agcagctcaa ccagcggctg caacaatctt tgcgcgtatt
     8341 gcagatgtcg ggtatcgaac ttgaacgcga ggtcgaaaac tggctgtcgg acaatcccct
     8401 gctcgaacgc aaagacacgg atgaattttc cgatgccggg tttcccatta caccgcgccc
     8461 gcgcgtcaaa tcggcggaga cgaaggcgaa gatatgctgt ccaacatcgt cggcgaagaa
     8521 gatttcaagc aatacctgca cgcgcaagtg tgcgaacacc cccttcccga ccaagaagcc
     8581 gcctgtgtcc acatccttat cgatttcctt gacgagcagg gttatctgac cgacagcatc
     8641 gaagacatcc tcgaccatac gcccttagag tggatgttgg atgaagcaat gctgcaacac
     8701 gcgctgaccg cattgaaaaa attcgacccg gcaggcgtgg ccgccgccga tttgaacgaa
     8761 tcgctgatac tgcagataga aagattgggc gaatgtgctg ccaaacccgc cgccctgcat
     8821 atcgtccgaa acgccctcga cagcattgac ggcaaccgca gccaaaccct cgcacgaata
     8881 aaaaaacacc tgccccaaac cgacagcggc acactcgaag ccgcactcga cctcattgct
     8941 tcgctcaatc cctttcccgc cgccggtttt gcctcgtcca cacccacgcc gtattctgac
     9001 gaggcgctcg ccaacctgct ggctttccgc ggcatggagg tttctcgccg caccattgcc
     9061 aaatacagag aatcctttga gattccggca gcacacaaac gcaaaaccgc agaataattg
     9121 ccgaataatc ttataaagac aacaaaccaa aagccggcat ttctgcgaaa gcgggaatgc
     9181 cgaatccgtc cgcgcggaaa cctgcatccc gtcattcccg cgaaagaggg aatctagaaa
     9241 cgcaaagttg caagaattta tcggaaatga ccgaaactca acgaacctgg attcccg
//
LOCUS       DAXHPV010000067         9287 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.067, whole genome shotgun sequence.
ACCESSION   DAXHPV010000067 DAXHPV010000000
VERSION     DAXHPV010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9287
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.067"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(18..302)
                     /locus_tag="ACFM6C_001162"
     CDS             complement(18..302)
                     /locus_tag="ACFM6C_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158621.1"
                     /translation="MPSEPPFRRHFTHQNRKTAPKIIITKHNGKPDTKPNTAAKMPSE
                     AVGATILIWGPLQGRITFLNHPFDSQINSAFACQKQNQYFAVRIGTFIVD"
     gene            complement(308..1363)
                     /locus_tag="ACFM6C_001163"
     CDS             complement(308..1363)
                     /locus_tag="ACFM6C_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6158622.1"
                     /translation="MKTYAPALYTAALLTACSPAADSNHPSGQNAPANTESDGKNITL
                     LNASYDVARDFYKEYNPLFIKTYQSEHPGTSVSIQQSHGGSSKQALSVANGLQADVVT
                     MNQSSDIDLLEKKGLVEKGWQQALPDHAAPYTSTMVFLVRKNNPKQIRDWNDLAKDGV
                     NIVIANPKTSGNGRYAFLGAYGYGLKTTNGNEQEAQKLVASILKNTPVFENGGRAATT
                     TFTQRNIGDVLITFENEANYVSKKLTQGQFEIVYPSYTISAESPVAVVNSVVAKKGTQ
                     KTARAYLEYLWSEPAQELAASLYLRPRNPEVLARHKADFPDLDSFSPEEKFGGWDNIM
                     KTYFADGGIFDRLTAQK"
     gene            complement(1469..1951)
                     /locus_tag="ACFM6C_001164"
     CDS             complement(1469..1951)
                     /locus_tag="ACFM6C_001164"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFC6158623.1"
                     /translation="MNLLTLLRPATVQDCKDIFKVHLHSVQYTCILSYNEHALKVWEG
                     LLNTESYLPTISDPDKALWVAEYKGNIQGFFQIDCQEAQLDALYVHPLFHNLGLGTAL
                     LHQAETIAHKSGLSFLKLYASLNSVPFYLLNRYESLGSAVLQLDPSIKIKCELMRKHL
                     "
     gene            complement(1998..3134)
                     /locus_tag="ACFM6C_001165"
     CDS             complement(1998..3134)
                     /locus_tag="ACFM6C_001165"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HFC6158624.1"
                     /translation="MKNISLSPPAMLGILGGGQLGRMFTVAAKTMGYKVTVLDPNPNA
                     PAAEFADRHLCAPFDNQTALEELAKCAAVTTEFENVNADAMRFLAKHTNVSPSGDCVA
                     IAQNRIQEKSWIRKAGLQTAPYQAICKAEDITEESIQFLPGILKTATLGYDGKGQIRV
                     KTVDELKAAFAEHRGVDCVLEKMVDLRGEISVIVCRLNNDNVQTFDPAENIHENGILA
                     YSIVPARLSADVQQQARQMAQRLADELDYVGVLAVEMFVVGDTHELVVNEIAPRPHNS
                     GHHTVDACAADQFQQQVRIMCNLPPADTKLLSPCCMANILGDVWQEDGGEPDWFPLQS
                     RPDAHLHLYGKKTAHKGRKMGHFTVLTTDSDTAFQEAKKLHQSL"
     gene            complement(3131..3676)
                     /locus_tag="ACFM6C_001166"
     CDS             complement(3131..3676)
                     /locus_tag="ACFM6C_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1643 domain-containing protein"
                     /protein_id="HFC6158625.1"
                     /translation="MTYEKLYELRQTLRPTTKDGLYTDNEKNREILTVRWSGNTENPK
                     NFSAVAIGINPSKANDERSDKTLTQLARFLDMYGFTNFKMLNIFSSYSTHQTGIRANT
                     QTDFSKFKGCLKDADMIILAWGTDRGAYKDEKNRILEFLKAEKFMEKVFCISETGNSS
                     DTRHPSRISYSYQLVQFEESA"
     gene            complement(3673..5148)
                     /gene="trpE"
                     /locus_tag="ACFM6C_001167"
     CDS             complement(3673..5148)
                     /gene="trpE"
                     /locus_tag="ACFM6C_001167"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HFC6158626.1"
                     /translation="MISKQEYQAQAAQGYNRIPLVQELLADLDTPLSLYLKLANRPYT
                     YLLESVVGGERFGRYSFIGLPCSHYLKASGKHVDVYQNGEIVEQHDGNPLPFIEAFHN
                     RFKTPEIPSLPRFTGGLVGYFGYETIYNFEHFAHRLKNTTKADPLGTPDILLMLSQEL
                     AVIDNLSGKIHLVVYADPSQPDGYERARERLEDIRTQLRQSCAIPLSLGSKHTEAVSE
                     FGEEPFKACVNKIKDYIFAGDCMQVVPSQRMSMEFTDSPLALYRALRTLNPSPYLFYY
                     DFGDFHIVGSSPEILVRRERDDVIVRPIAGTRLRGKTPAEDLANEQDLLSDAKEIAEH
                     VMLIDLGRNDVGRISKTGEVKVTDKMVIEKYSHVMHIVSNVEGRLKDGMTNMDILAAT
                     FPAGTLSGAPKVRAMEIIEEVEPSKRGIYGGAVGVWGFNNDMDLAIAIRTAVVKNNTL
                     YVQSGAGVVADSDPASEWQETQNKARAVIRAAQMVQEGLDK"
     gene            complement(5259..5624)
                     /locus_tag="ACFM6C_001168"
     CDS             complement(5259..5624)
                     /locus_tag="ACFM6C_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158627.1"
                     /translation="MFKRPEEIIVLILAVLWIAGTYFLAALFGADAYTVLKITALTLL
                     WSAASFLLWQKNLSRHIWPLLLGCLTACWWPYLNQSVAPGSLPWYASWTFKTILALIP
                     VTAGYLFKWKQYRQRKTKP"
     gene            complement(5645..7555)
                     /locus_tag="ACFM6C_001169"
     CDS             complement(5645..7555)
                     /locus_tag="ACFM6C_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HFC6158628.1"
                     /translation="MNILSVENASFAVGHVALLDKTSFQLDRGEKIGLIGRNGAGKSS
                     FLKILAGVQKLDDGQIIVQNNLKIVYVPQESFFDKEATVFDTVAEGLGEIRDLLRRYH
                     HVSHELENGSSEALLKELNELQLEIEAKDGWKLDAAVKQTLGELGLPENEKIGNLSGG
                     QKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDN
                     IATRIVELDRGILRSYPGSFSKYSEKKAQELAVEAEHNRLFDKFHAQEEAWIRKGIEA
                     RRTRNEGRVRRLEELRRQRAERRNVQGQVNFKLDSGEKSGKIIAELEHASFTYGDKVI
                     MDKFSAILQRGDKIGLIGPNGIGKTTFLKLILGELQPTYGRIRIGSKQEVAYFDQFRS
                     TLNENDTVFYTLGQGNDYVEVGGKKKHVMSYLEDFLFHPARAQSPVSSLSGGERNRLL
                     LAKLFTRPANILILDEPTNDLDIDTQELLEDLLRDYQGTVFLVSHDRMFLDNVITQSI
                     IFEGNGRLKEYIGGYQDYIDAKSREAKIQTESAPKTADAEPVKEKPKANRTVKLSYKE
                     QRELDALPDEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERW
                     ELLETKQNGNAV"
     gene            complement(7574..8218)
                     /locus_tag="ACFM6C_001170"
     CDS             complement(7574..8218)
                     /locus_tag="ACFM6C_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HFC6158629.1"
                     /translation="MLASAIDFILHIDQHLLALSAQYGVWIYAILFLIVFCETGLIVT
                     PLLPGDSLLFAAGGIAALGGMDIHLMVALLSLAAILGDALNFTVGKYFGGRLFANPDS
                     KIFRREYLDKTHRFYEKHGGKTIIIARFMPIVRTFAPFVAGMGKMHYAKFIRYNIIGG
                     LLWVILFSYAGYFFANFPVVKNNLGLVMGGIIIVSVLPGAVEIARAKLAVKSKR"
     gene            complement(8382..9200)
                     /gene="opc"
                     /locus_tag="ACFM6C_001171"
                     /gene_synonym="opcA"
     CDS             complement(8382..9200)
                     /gene="opc"
                     /locus_tag="ACFM6C_001171"
                     /gene_synonym="opcA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter adhesin Opc"
                     /protein_id="HFC6158630.1"
                     /translation="MKKTVFTCAMIALTGTAAAAQELQTANEFTVHTDLSSISSTRAF
                     LKEKHKAAKHIGVRADIPFDANQGIRLEAGFGRSKKNIINLETDENKLGKTKNVKLPT
                     GVPENRIDLYTGYTYTQTLSDSLNFRVGAGLGFESSKDSIKTTKHTLHSSRQSWLAKV
                     HADLLSQLGNGWYINPWSEVKFDLNSRYKLNTGVTNLKKDINQKTNGWGFGLGANIGK
                     KLGESASIEAGPFYKQRTYKESGEFSVTTKSGDVSLTIPKTSIREYGLRVGIKF"
BASE COUNT         2013 a         2042 c         2645 g         2587 t
ORIGIN      
        1 cgctgtactg gtttttgtta atccactata aatgttccga tacgaactgc aaaatattgg
       61 ttttgtttct gacaggcaaa agcactgttt atttggctgt caaaaggatg gttaaggaaa
      121 gttatgcgcc cctgaagcgg gccccagata aggatggttg cgccgacggc ttcagacggc
      181 attttggcgg cggtgttggg ttttgtatcc ggtttgccgt tgtgttttgt gatgatgatt
      241 ttgggcgcgg tttttctgtt ttgatgtgtg aaatgccgtc tgaaaggcgg ttcagacggc
      301 atagcggtca tttttgtgcg gtcaggcggt cgaatatgcc gccgtcggcg aagtaggttt
      361 tcatgatgtt gtcccatccg ccgaattttt cttcgggaga gaatgagtct aagtctggga
      421 agtcggcttt gtgtcttgcc aatacttcgg ggttgcgggg gcgcaggtag agtgaggcgg
      481 cgagttcttg cgccggttcg ctccaaaggt attcgagata ggcgcgggcg gttttttgcg
      541 tgcctttttt cgcgacgacg ctgttgacga cggcgacggg gctttcggcg gaaatggtgt
      601 agctcggata gacgatttca aactgtcctt gggtcagttt tttgctgacg tagttggctt
      661 cgttttcaaa agtaatgagt acgtcgccga tgttgcgttg tgtgaaggtg gtggtggcgg
      721 cgcgtccgcc gttttcaaaa acgggggtgt ttttgaggat ggatgcgacg agtttttggg
      781 cttcctgttc gttgccgttg gtggttttca gaccgtaacc gtatgcgccg aggaaggcgt
      841 agcgtccgtt gcccgaggtt ttgggattgg cgatgacgat gttaacgccg tctttggcaa
      901 ggtcgttcca atcgcggatc tgtttggggt tgttttttcg gacaaggaaa accatagtgc
      961 tggtgtaggg cgcggcgtgg tcggggaggg cttgttgcca gcctttttct accagtcctt
     1021 ttttttcgag caggtcgatg tcggaggatt ggttcatggt tacgacatcg gcttgaaggc
     1081 cgttggctac ggataatgcc tgtttgctgg agccgccgtg ggactgttgg atgctgacgg
     1141 atgtgccggg gtgttcggat tggtatgttt tgataaataa ggggttgtat tctttgtaaa
     1201 aatcccgtgc cacatcgtat gaggcgttga gcagggtaat gttttttccg tcggattcgg
     1261 tattggccgg ggcattttgt ccggacggat ggtttgaatc ggctgcgggg ctgcaggcgg
     1321 tgagcagggc tgcggtatag agtgccggtg cgtaggtttt catatgcttg tcctgtcggt
     1381 tggtagatgg ggcaacttta tacggctgtc tgcgcttgtg gaaataatgt ttgatttgaa
     1441 gattatcagt tttggttata aggacggatc agaggtgttt ccgcatcagt tcgcatttga
     1501 ttttgatgct ggggtcaagc tgcaatactg ccgaaccgag cgattcgtag cggttgagaa
     1561 ggtaaaacgg gactgagttg agcgatgcgt agagtttcag aaagctcaaa ccggatttgt
     1621 gggcgatggt ttccgcctga tgaagtaggg cagtgcccag tccgaggttg tggaacaggg
     1681 ggtggacgta aagtgcatcg agttgtgctt cttggcagtc gatttggaaa aatccctgta
     1741 tgttgccttt gtattcggca acccaaagtg ctttgtcggg atcggaaatg gtcggcaggt
     1801 agctttctgt gtttaacaag ccttcccata cttttagggc gtgttcgttg tagctgagga
     1861 tgcaggtgta ttggacggag tgcaggtgga ctttgaagat gtctttgcag tcttgcacgg
     1921 tggcggggcg taacagtgtc agcaggttca tggcagtatg tcggcggctt cagacggcat
     1981 ctgtgccgtt ggtcggatta tagggactga tgcagttttt ttgcttcttg aaatgcggtg
     2041 tccgaatcgg tggttaaaac ggtaaagtgt cccattttcc gccctttgtg cgcggttttt
     2101 ttgccgtaaa ggtgcaggtg cgcgtccggc cggctttgca ggggaaacca atccggttcg
     2161 ccgccgtctt cctgccaaac gtcgcccaaa atattcgcca tacagcaagg cgataataat
     2221 ttggtgtcgg caggcggcag gttgcacata atgcgtacct gttgctggaa ttggtctgcc
     2281 gcgcaggcat cgacggtatg gtggccggag ttgtgcggac gcggcgcgat ttcgttgacg
     2341 accaattcat gtgtgtcacc gacaacaaac atttctaccg ccaatacgcc gacataatcc
     2401 aattcgtccg ccaagcgttg cgccatctgc cgcgcctgtt gctgcacgtc ggcactcagt
     2461 cgcgcgggga cgatggaata agccaagatg ccgttttcgt ggatgttttc ggcaggatcg
     2521 aaagtttgca cgttgtcatt gttcagacgg catacgataa cggaaatttc gccgcgcaag
     2581 tccaccattt tttccaaaac gcaatccacg ccgcggtgtt cggcaaacgc ggctttgagt
     2641 tcatccaccg tttttacgcg gatttggcct ttgccgtcat agcccaatgt agcggttttc
     2701 aggatgccgg gcagaaattg tatgctttct tcagtgatgt cttcggcttt gcaaattgct
     2761 tgatacggcg cggtttgcag gcctgctttg cgtatccatg acttttcctg aatgcggttt
     2821 tgcgcgatgg caacgcagtc gccgctgggg gaaacattgg tatgtttggc gagaaaacgc
     2881 atcgcatcgg cattgacgtt ttcgaactcg gtcgtaacag ccgcacattt tgccaattct
     2941 tccaaagcgg tttggttgtc aaacggcgca cacaaatggc ggtcggcaaa ttccgctgcc
     3001 ggcgcattcg ggttgggatc gagtacggtt actttgtagc ccatggtttt ggcagcaaca
     3061 gtaaacattc tgcctaattg tccgccgcca agaatgccga gcatggcggg cggagaaaga
     3121 gatatgtttt tcatgctgac tcttcaaatt gtacaagttg atagctataa ctaattcttg
     3181 acggatgtct tgtatcgctg gaattaccag tttcagaaat acagaatact ttttccataa
     3241 atttttctgc ttttagaaat tccagtattc tgtttttttc atccttataa gcaccgcggt
     3301 ctgtacccca tgcaagaata atcatatcgg catctttcaa acatccttta aatttggaaa
     3361 aatcggtttg ggtgtttgcc ctaattcctg tttgatgtgt agagtaactg gaaaaaatat
     3421 ttaacatttt gaagttggta aaaccgtaca tatccaagaa acgtgcaagt tgggtaaggg
     3481 ttttgtcgct tctttcatca tttgctttac ttggattaat tcctatagcg acagctgaga
     3541 aatttttagg attttctgtg ttgccgctcc atctaaccgt taggatttct cgattttttt
     3601 cattatctgt atagagaccg tctttggtag tcggtctgag tgtttggcga agctcataaa
     3661 gtttttcata agtcatttat ccaacccttc ctgcaccatc tgcgcggcgc gtataacggc
     3721 tcgggctttg ttttgtgttt cctgccattc ggaggccgga tcggagtcgg caaccacgcc
     3781 cgcgccgctt tggacgtata gcgtgttgtt ttttactacg gcggtgcgga tggcgattgc
     3841 caaatccatg tcgttgttga aaccccatac gccgacggca ccgccgtaga tgccgcgttt
     3901 gctcggttcg acttcttcga tgatttccat ggcgcggact ttgggtgcgc cggagagtgt
     3961 gccggcaggg aaggtagcgg cgaggatgtc catgttggtc atgccgtctt tcagacggcc
     4021 ttcgacgttg gaaacgatgt gcattacatg ggagtatttt tcaatcacca ttttgtcggt
     4081 aactttgact tcgccggttt tactgatgcg gccgacgtcg ttgcgtccta agtcaatcaa
     4141 catgacgtgt tcggcgattt ctttggcatc gcttaacaaa tcttgttcgt tggcaaggtc
     4201 ttcggcgggg gttttgccgc gcaggcgcgt gccggcgatg gggcggacga tgacatcgtc
     4261 gcgttcgcgg cggacgagga tttcgggcga ggagccgacg atgtggaaat cgccgaaatc
     4321 gtagtaaaag agataaggcg aagggttgag cgtacgcagg gcgcggtaga gggcgagcgg
     4381 gctgtcggtg aattccatgc tcatgcgctg gctggggaca acctgcatgc agtcgcctgc
     4441 gaagatgtag tctttgattt tgttaacgca ggctttgaac ggctcttcgc cgaattcgct
     4501 gacggcttcg gtgtgtttgc tgccgagcga gagcgggatg gcgcagcttt ggcgcaactg
     4561 ggtgcggatg tcttcgaggc gttcgcgggc gcgttcgtag ccgtcgggct gcgacggatc
     4621 ggcgtaaacg acgagatgga ttttgccgct caaattgtcg atcaccgcca attcttgcga
     4681 cagcatcagc aagatgtcgg gcgtgccgag cgggtcggct ttggtggtgt ttttcaggcg
     4741 gtgggcgaag tgttcaaaat tgtagatggt ttcgtaaccg aagtagccga ccagtccgcc
     4801 ggtaaagcgc ggcaggcttg ggatttcggg tgttttgaag cggttgtgga aggcttcgat
     4861 aaagggcagg gggttgccgt cgtgttgctc gacaatttcg ccgttttgat aaacatcgac
     4921 gtgtttgccg ctggctttga gatagtggct gcaaggcagg ccgataaaag aatagcggcc
     4981 gaaacgttcg ccaccgacaa cggattcgag caggtaggta taggggcggt tggcgagttt
     5041 gagatagagg gaaagcggcg tatccaaatc ggcaaggagt tcttgcacga gcgggatgcg
     5101 gttgtagcct tgggcggctt gggcttggta ttcttgtttg ctgatcattt ctgctttccc
     5161 aaagggcggt ttcggacggc gcggcaacgg gcgcgagtat agcattttat cggaattgtt
     5221 gacagtctga ccggagatgc cgtctgaaaa ggacgggctt acggctttgt tttgcgctgc
     5281 cggtattgtt tccatttaaa cagataacct gcggttacgg gaatcagggc taagatggtt
     5341 ttgaacgtcc atgatgcata ccaaggtaaa gaaccgggtg cgaccgattg attcagatac
     5401 ggccaccaac aggcagtcag gcagccgagc agcagcggcc agatatgccg gctgaggttt
     5461 ttttgccaaa ggaggaatga tgcggcagac caaagcaggg taagggcagt gatttttaac
     5521 acggtataag catccgctcc aaacagggcg gcgagaaaat acgtaccggc aatccagagg
     5581 acggcaagta tcaggacaat gatttcttca ggtcgtttga acattttttt cttcctgttt
     5641 gatttcagac ggcattgccg ttctgtttgg tttccagcag ctcccagcgt tccagctttt
     5701 ccaaaagcag catttcgatt tcttcggcgc ggctttgcag tgcgccggct ttttcgtaat
     5761 ctttgaagat ttcgggatcg gaaagctgcg cgttgatttc tgcctgttcg gcttccaagg
     5821 cggcgatttc gtcgggcagg gcgtcgagtt cgcgctgttc tttgtaggac agtttgaccg
     5881 tgcggttggc tttgggtttt tctttcaccg gttcggcatc ggctgttttg ggtgcggatt
     5941 ccgtctgaat cttcgcttcg cgtgattttg cgtcgatgta gtcctgatag ccgccgatat
     6001 attcttttaa ccttccattt ccttcaaaaa taatgctttg ggtaatcacg ttatcgagga
     6061 acatacggtc gtgtgagaca aggaataccg tgccttgata atcgcgcagc aaatcttcaa
     6121 gcagctcttg ggtatcgata tccaagtcgt tggtcggttc gtccaaaatc aaaatattag
     6181 caggacgggt aaagagtttt gccagcaaaa ggcggttgcg ttcgccgccg gagagcgatg
     6241 aaacgggact ttgtgcgcgg gctggatgga ataagaaatc ttccagatag ctcattacgt
     6301 gttttttctt gccgccgact tcgacgtaat cgttgccttg accgagcgtg taaaacacgg
     6361 tgtcgttttc gttcaacgtg ctgcggaatt ggtcgaaata ggcaacttcc tgcttactgc
     6421 cgatacggat tctgccgtag gtcggctgca attcgcccaa aatcagcttg aggaaggtgg
     6481 ttttgccgat accgtttggg ccgattaagc cgattttgtc gccacgctgc aagatggcgg
     6541 agaatttgtc catgatgact ttgtcgccat aggtaaacga ggcatgttcc agttcggcaa
     6601 tgattttgcc gcttttctcg ccgctgtcga gcttgaaatt gacctgccct tgtacgttgc
     6661 ggcgttcggc acgctggcgg cgcagttctt ccaaacggcg cacgcggcct tcgttgcggg
     6721 tacggcgcgc ttcgatgcct ttgcgtatcc acgcttcttc ctgcgcgtgg aatttgtcga
     6781 agaggcggtt gtgttccgct tcgactgcca actcttgcgc ttttttctcg ctatatttgg
     6841 agaacgagcc gggataggaa cgcaaaatac cgcgatcgag ttcgacaatc cgcgtggcga
     6901 tattgtccaa aaaacggcgg tcgtgggtaa tcacaaccag gctgccttca aacgctttga
     6961 gcaggttttc caaccaaata atcgcgtcga tgtccaaatg gttggtcggt tcatcgagca
     7021 gcaatacgtc gggcttctgc acccaagcct gcgccaaggc gacgcgcttt ttctgaccgc
     7081 cggagaggtt gccgattttt tcgttttccg gcaaaccgag ttcgcccaaa gtctgcttca
     7141 ccgccgcatc caacttccag ccgtccttcg cttcgatctc aagttgcaat tcgttgagct
     7201 ctttcaataa ggcctcactc gaaccatttt ccaactcatg gctgacatga tgataacggc
     7261 gcaataaatc gcgaatttcg cccaaacctt cggcaacagt atcaaatacg gttgcttcct
     7321 tatcaaaaaa ggattcctgc ggtacataaa cgattttgag gttgttttgg acaataatct
     7381 gcccatcatc aagcttttgc acgccggcga ggatttttaa aaacgaagac ttacccgcac
     7441 cattacgacc gattaagccg attttttcgc ctctgtcgag ttggaaggaa gttttgtcga
     7501 gcagggcgac gtggccgacg gcaaaggaag cgttttctac agataatata ttcatgatac
     7561 aaattctcaa cagttaccgt ttggatttta ccgcaagttt ggcgcgggca atttcaaccg
     7621 cacccggcag gacggaaaca ataatgatgc cgcccatcac caagcccaga ttgtttttta
     7681 cgacggggaa gttggcaaag aaatagcccg cgtaagaaaa caggataacc cacaacaagc
     7741 caccgatgat gttgtagcgg ataaatttgg catagtgcat tttccccata ccggcgacga
     7801 agggggcgaa ggtgcggacg atgggcataa aacgggcaat gatgatggtt ttgccgccgt
     7861 gtttttcgta aaaacggtgg gttttatcga gatattcacg tcggaagatt ttagaatcgg
     7921 gattggcgaa cagcctgccg ccgaaatatt tgccgacggt aaaattgagc gcgtcgccga
     7981 gtatggcggc aaggcttaat aatgcaacca tcaaatgaat atccataccg cccagcgcgg
     8041 caataccgcc ggcggcaaac agcagcgaat cgccgggcag taagggcgta acaatcaggc
     8101 cggtttcgca aaaaacaatc aaaaacagaa tcgcataaat ccacacaccg tattgcgccg
     8161 acagcgcgag caggtgttgg tcgatatgga ggatgaagtc gatggcggag gcaagcacgg
     8221 cgcgttccta aaaaaaacaa accgcgtatt ttaaccgatt ggaaaaatgc cgtctgaaat
     8281 tttcagacgg catcggctat tcaaattcat ttcacgtaaa aaccgcaaac caaaatagtt
     8341 tgcggtttgg catttaaagt gacaatgatg atttcaaatc atcagaattt tatgccgacg
     8401 cgcaagccgt attcacgaat actggttttc gggatggtga gcgatacgtc gccactcttg
     8461 gttgttacac taaactcgcc ggattctttg taagtgcgtt gtttgtagaa cggccccgcc
     8521 tcgatgctgg cggattcgcc cagtttttta ccaatatttg cacccaatcc aaagccccag
     8581 ccgttggttt tttgattgat gtcttttttg agattggtaa cgccggtgtt taatttatag
     8641 cgggaattga ggtcaaattt cacttcagac caagggttga tataccagcc gttacccagt
     8701 tgggaaagca aatccgcgtg aactttggct aaccacgact gacggctgct gtgaagcgta
     8761 tgcttggtgg ttttaatgct gtcttttgaa gattcaaaac ccaagccggc acccacacgg
     8821 aaatttaaag aatcacttaa cgtttgggtg taggtgtagc ctgtgtaaag atcgatacgg
     8881 ttttcaggaa cgccggtggg cagttttaca tttttagtct tacccagctt gttctcatct
     8941 gtttccaaat taataatatt ttttttgctg cgcccgaaac cggcttccaa gcggatgcct
     9001 tggttggcat caaaaggaat atcagcacgt acgccgatgt gtttggcagc tttgtgtttt
     9061 tctttcagga aagcacgagt tgaagaaatg gaagagaggt cggtgtggac ggtaaactca
     9121 ttagcggttt gaagctcttg tgcagcggcg gcagtaccgg tcagggcaat catggcacat
     9181 gtaaaaactg tttttttcat agttaaaatc tccaaaattt ggattgtagt cggatatggt
     9241 aacataacgt aaataatcgt tacgcttaca attatattct taagctt
//
LOCUS       DAXHPV010000068         9266 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.068, whole genome shotgun sequence.
ACCESSION   DAXHPV010000068 DAXHPV010000000
VERSION     DAXHPV010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9266
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.068"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            165..1508
                     /locus_tag="ACFM6C_001172"
     CDS             165..1508
                     /locus_tag="ACFM6C_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit A"
                     /protein_id="HFC6158631.1"
                     /translation="MIKIKKGLNLPIAGRPEQVIYDGPVITEVALLGEEYAGMRPSMK
                     VKEGDAVKKGQVLFEDKKNPGVVFTAPVSGKIAAIHRGEKRVLQSVVIAVEGNDEIEF
                     ERYAPEALANLSGEEVRRNLIQSGLWTALRTRPFSKIPAVDAEPFAIFVNAMDTNPLA
                     ADPVVVIKEAAEDFRRGLLVLSRLTERKIHVCKAAGADVPSENAANIETHEFGGPHPA
                     GLSGTHIHFIEPVGANKTVWTINYQDVIAIGRLFATGRLNTERVIALGGSQVNKPRLL
                     RTVLGAKVSQITAGELVDADNRVISGSVLNGAITQGAHDYLGRYHNQISVIEEGRSKE
                     LFGWVAPQPDKYSITRTTLGHFLKNKLFKFTTAVNGGDRAMVPIGTYERVMPLDILPT
                     LLLRDLIVGDTDSAQALGCLELDEEDLALCSFVCPGKYEYGPLLRKVLETIEKEG"
     gene            1511..2743
                     /locus_tag="ACFM6C_001173"
     CDS             1511..2743
                     /locus_tag="ACFM6C_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit B"
                     /protein_id="HFC6158632.1"
                     /translation="MGLKHFLEKIEPHFLPGGKHEKWYALYEAAATIFYTSGAVTRKA
                     AHVRDALDSKRMMILVWLALFPAMFYGMYNVGAQAFGALTPDLLQQSIANDWHYALAN
                     ALGINMSSEAGVLGKMLFGAIYFLPIYATVFIVGGFWEVLFATVRKHEINEGFFVTSI
                     LFALIVPPTLPLWQAALGISFGVVVAKEVFGGTGKNFMNPALAGRAFLFFAYPANLSG
                     DAVWTAVDGYSGATALAQWAAHGADGLKNAVTGQTITWMDAFIGKLPGSIGEVSTLAL
                     LIGGAFIVFARIASWRIIAGVMIGMIAMSSLFNFIGSDTNAMFAMPWYWHLVVGGFAI
                     GMLFMATDPVSASFTNVGKWWYGALIGVMCVLIRVVNPAYPEGMMLAILFANLFAPIF
                     DYFVAQANIKRRKARSNG"
     gene            2736..3512
                     /locus_tag="ACFM6C_001174"
     CDS             2736..3512
                     /locus_tag="ACFM6C_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit C"
                     /protein_id="HFC6158633.1"
                     /translation="MAKKFDKDSFSGTLIVVLAVSLICSVIVAGAVVGLKPIQEKQKL
                     QDKQGYILSVAGLMDKDTDIGKTFAERIEQRVVDLATGEYVADAPKDFSARIAGKDPA
                     QSIRIKPEDDLAGIKSRAKYTEVYLVKGEDGKIGQIILPMHGNGLWSVMYGFVAIQPD
                     GNTINGITYYEQGETPGLGGEIGNPLWQQKFVGKKLFDGQGKLALHVGKGAGSDKEHG
                     VDALSGASLTSKGVQGSFAYWFGENGYIPYLNKLKSAGAQ"
     gene            3512..4138
                     /locus_tag="ACFM6C_001175"
     CDS             3512..4138
                     /locus_tag="ACFM6C_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit D"
                     /protein_id="HFC6158634.1"
                     /translation="MADMKRLKHLMFSPFIDNNPIALQVLGICSALAVTTKLQTAIVM
                     GISVALVTGFSSFFISLVRNYIPNSIRIIVQMAIIASLVTLVDQLLQAFAYELSKQLS
                     VFVGLIITNCIVMGRAEAFAMKEPPLESLIDGIGNGAGYGIMLLVVATVRELIGSGKL
                     LGYTVFQTVQDGGWYQTNGLFLLAPSAFFIIGFLIWGLRTWKPEQAEE"
     gene            4142..4735
                     /gene="nqrE"
                     /locus_tag="ACFM6C_001176"
     CDS             4142..4735
                     /gene="nqrE"
                     /locus_tag="ACFM6C_001176"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit E"
                     /protein_id="HFC6158635.1"
                     /translation="MEHYLSLFIKSVFIENMALSFFLGMCTFLAVSKKVSTAFGLGVA
                     VIFVLGLSVPVNQLVYSLLKDGAIVEGVDLTFLKFITFIGVIAALVQILEMFLDKFVP
                     ALYNALGIYLPLITVNCAIFGAVSFMAQREYNFGESVVYGFGAGLGWMLAIVALAGIT
                     EKMKYSDAPKGLKGLGITFIAAGLMAMAFMSFSGIQL"
     gene            4749..5966
                     /gene="nqrF"
                     /locus_tag="ACFM6C_001177"
     CDS             4749..5966
                     /gene="nqrF"
                     /locus_tag="ACFM6C_001177"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit F"
                     /protein_id="HFC6158636.1"
                     /translation="MEIILGIVMFTVIVLVLALMILFAKSKLVSEGDITIKVNGEKEL
                     TMPAGGKLLGALANEGIFIPSACGGGGSCGQCRVVVKSGGGDILPTELSHISKREARE
                     GCRLSCQVNVKTDMDIEVPEEVFGVKKWECTVISNDNKATFIKELKLAIPEGEEVPFR
                     AGGYIQIEAPPHTVAYKDFDIPEEYHEDWDKYNLWQYVSKVDEPILRAYSMASYPEEK
                     GIIMLNVRIATPPPRVPDAPPGQMSSYIWSLKPGDKVTISGPFGEFFAKDTDAEMVFI
                     GGGAGMAPMRSHIFDQLKRLNSKRKITFWYGARSKREMFYVEDFDQLAAEFPNFTWHV
                     ALSDPLPEDNWDGYTGFIHNVVYENHLKNHEAPEDCEFYMCGPPIMNQSVIKMLKDLG
                     VEDENILLDDFGG"
     gene            6118..7173
                     /locus_tag="ACFM6C_001178"
     CDS             6118..7173
                     /locus_tag="ACFM6C_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0017013 - protein flavinylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HFC6158637.1"
                     /translation="MPSETRLPNFIRTLIFALSFIFLNACSEQTAQTVTLQGETMGTT
                     YTVKYLSNNRDKLPSPAEIQKRIDDALKEVNRQMSTYQPNSEISRFNQTTAGKPLRIS
                     SDFAHVTAEAVRLNRLTHGALDVTVGPLVNLWGFGPDKSVTREPSPEQIKQAASYTGI
                     DKIILKQGKDYASLSKTHPKAYLDLSSIAKGFGVDKVAGELEKYGIQNYLVEIGGELH
                     GKGKNARGEPWRIGIEQPNIVQGGNTQIIVPLNNRSLATSGDYRIFHVDKNGKRLSHI
                     INPNNKRPISHNLASISVVADSAMTADGLSTGLFVLGETEALKLAEREKLAVFLIVRD
                     KGGYRTTMSSEFEKLLR"
     gene            7199..7414
                     /gene="nqrM"
                     /locus_tag="ACFM6C_001179"
     CDS             7199..7414
                     /gene="nqrM"
                     /locus_tag="ACFM6C_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Na+)-NQR maturation NqrM"
                     /protein_id="HFC6158638.1"
                     /translation="MKTLLLTFSIFLTVIIGMAVGYIFSKRSIKGSCGGITALGMKKM
                     CDCDTPCDTLQKKLDEEKQAGGIRVDR"
     gene            complement(7538..8116)
                     /gene="grpE"
                     /locus_tag="ACFM6C_001180"
     CDS             complement(7538..8116)
                     /gene="grpE"
                     /locus_tag="ACFM6C_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HFC6158639.1"
                     /translation="MSEQTQQQNSEEAVENVEAVETVETVGNADGVQEQAAAEPTYED
                     LQARVADLEAQLKDEQLRALANEQNLRRRHQQEIADTHKFAGQKFAVEMLPVKDYLEM
                     ALLDQSGNFDALKMGVQLTLNELQKAFDATQIKEINPKAGDKLDPNIHQAMQAVASEQ
                     EPNTVVGVMKKGYTLSDRVLRPAMVTVAQKEA"
     gene            8300..9118
                     /gene="cysE"
                     /locus_tag="ACFM6C_001181"
     CDS             8300..9118
                     /gene="cysE"
                     /locus_tag="ACFM6C_001181"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0009001 - serine O-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HFC6158640.1"
                     /translation="MKKDHLNTTGFDLWHTIREETAAAVSAEPMLASFLHQTVLRHES
                     LGSVLAYHLSSKLGSPIMDVRALFEIYQQALGSDTQIGKCVEADLKAIYERDPACDEY
                     SLPLLYFKGFHAIQAHRINHRLYLDGRKTLAYFLQNRMSEVFGVDIHPAARFGYGLML
                     DHATGFVAGETAVLGNNISILHGVTLGGSGKECGDRHPKIGDGVMIGANASILGNIRI
                     GSNAKIGAGSVVVSDVPPSITVVGVPAKPVARSLKTPSADMDQNIQFTEIDFMI"
BASE COUNT         2237 a         2579 c         2297 g         2153 t
ORIGIN      
        1 aaacagcttc cgcaaggaaa aaagcagcaa atctgacaaa caggtacaat tcctgataga
       61 atctaacact ttgctacatt aatttattca atgcttttga tgccacgcga cacggtatca
      121 aaacacgccg tttttacctt aaccatcaca agtaatgcaa atatatgatt aaaatcaaaa
      181 aaggtctaaa cctgcccatc gcgggcagac cggagcaagt catttatgac gggcccgtca
      241 ttaccgaagt cgcgttgctt ggcgaagaat atgccggtat gcgcccctcg atgaaagtca
      301 aggaaggcga tgccgtcaaa aaaggccaag tgctgtttga agacaaaaag aatccgggcg
      361 tggtgtttac cgcgccggtt tcaggcaaaa tcgccgccat ccatcgcggc gaaaagcgcg
      421 tgcttcagtc ggttgtgatt gccgttgaag gcaacgacga aatcgagttc gaacgctacg
      481 cgcccgaagc gttggcaaac ttaagcggcg aagaagtgcg ccgcaatctg attcaatccg
      541 gtttgtggac tgcgctgcgt acccgtccgt tcagcaaaat ccctgccgtc gatgccgagc
      601 cgttcgccat cttcgtcaat gcgatggaca ccaatccgct ggcggcagac cctgtggttg
      661 tgatcaaaga agccgccgag gatttcagac gaggtttgct ggtattgagc cgtttgaccg
      721 agcgtaaaat ccatgtgtgt aaggcagctg gcgcagacgt gccgtctgaa aatgctgcca
      781 acatcgaaac acatgaattc ggcggcccgc atccggccgg tttgagtggc acgcacattc
      841 atttcattga gccggtcggt gcaaacaaaa ccgtttggac catcaattat caagatgtaa
      901 ttgccatcgg acgtttgttt gcaacaggcc gtctgaacac cgagcgcgtg attgctttgg
      961 gtggttctca agtcaacaaa ccacgcctct tgcgtaccgt tttgggtgcg aaagtatcgc
     1021 aaattactgc gggcgaattg gttgacgcag acaaccgcgt gatttccggt tcggtattga
     1081 acggcgcgat tacacaaggc gcgcacgatt atttgggacg ctaccacaat cagatttccg
     1141 ttatcgaaga aggccgcagc aaagagctgt tcggctgggt tgcgccgcag ccggacaaat
     1201 actccatcac gcgtacgacc ctcggccatt tcctgaaaaa caaactcttc aagttcacga
     1261 cagccgtcaa cggtggcgac cgcgccatgg tgccgattgg tacttacgag cgcgtaatgc
     1321 cgctagacat cctgcctacc ctgcttttgc gcgatttaat cgtcggcgat accgacagcg
     1381 cgcaggcatt gggttgcttg gaattggacg aagaagacct cgctttgtgc agcttcgtct
     1441 gcccgggcaa atacgaatac ggcccgctgt tgcgtaaggt gctggaaacc attgagaagg
     1501 aaggctgatt atgggcttga aacattttct ggaaaaaatc gaaccgcact tcctgccggg
     1561 cggcaaacat gaaaaatggt atgccctcta cgaagctgcg gcgacgattt tctatacatc
     1621 cggtgcggta acgcgcaaag cggcacacgt ccgcgatgcg ctcgactcca aacgcatgat
     1681 gattttggtg tggctggctt tgttccctgc catgttctac ggtatgtaca acgtcggcgc
     1741 acaggcattc ggtgcgttaa cgcccgattt gctgcaacaa agcatcgcca acgactggca
     1801 ttacgccctt gccaacgctt tgggcatcaa tatgtcgtct gaagcgggcg tgttgggcaa
     1861 aatgctgttc ggcgcgattt acttcctgcc gatttacgcg accgtattta ttgtcggcgg
     1921 tttctgggaa gttttgttcg ccaccgtgcg caaacatgaa atcaacgaag gtttctttgt
     1981 tacctcgatt ctgtttgcct taatcgttcc gcccacgctg ccgctgtggc aggcagcttt
     2041 gggtatttct ttcggcgtgg tggttgcgaa agaagtattc ggcggtacag gtaaaaactt
     2101 catgaaccct gcgctggcag gccgtgcctt cctgttcttc gcctaccctg ccaacttgag
     2161 cggcgatgcg gtttggacgg cggttgacgg ctattccggc gcaaccgcgc tggcgcaatg
     2221 ggcggcacac ggtgcagacg gcctgaaaaa cgccgtaacc ggtcaaacca tcacttggat
     2281 ggatgcgttt atcggcaaac tgcccggctc catcggcgaa gtatccactt tggcactctt
     2341 aatcggcggc gcgtttatcg tgtttgcccg catcgcttct tggcgcatta ttgccggcgt
     2401 gatgatcggt atgattgcca tgtcttcgct gttcaacttc atcggttcgg acaccaacgc
     2461 tatgtttgct atgccttggt actggcattt ggtcgtcggc ggcttcgcca tcggtatgct
     2521 gtttatggcg accgaccccg tttccgcttc ctttaccaat gtcggcaaat ggtggtacgg
     2581 cgcactgatc ggtgtgatgt gcgtattaat ccgcgtggtc aatccggctt accccgaagg
     2641 catgatgttg gcgattctgt ttgccaacct gtttgccccg attttcgact atttcgtcgc
     2701 acaagcgaac atcaaacgca gaaaggcgcg cagcaatggc taagaaattc gataaagaca
     2761 gcttcagcgg cacgctgatt gtcgtgttgg cggtcagcct gatttgctcg gtcatcgttg
     2821 ccggtgcggt cgtcggcttg aaacccatcc aagagaaaca aaaactccaa gacaaacaag
     2881 gctatatctt gagcgtagcc ggtttgatgg ataaggacac cgacatcggt aaaacctttg
     2941 ccgagcgtat cgagcaacgt gttgtcgatt tggcgaccgg cgaatacgtc gccgatgcgc
     3001 ctaaagactt cagcgcgcgc atcgcaggca aagaccctgc ccaaagcatc cgcatcaaac
     3061 ccgaagacga tttggcaggc atcaaaagcc gtgccaaata caccgaggtt tatttggtaa
     3121 aaggcgaaga cggcaaaatc gggcaaatca tcctgcctat gcacggtaac ggtttgtggt
     3181 cggtcatgta cggctttgtc gccatccagc ccgacggcaa caccatcaac ggcattacct
     3241 actacgaaca aggcgaaacc ccgggcttgg gcggcgaaat cggcaatccg ttgtggcagc
     3301 aaaaattcgt cggcaaaaaa ctgtttgacg gacaaggcaa actcgccctg cacgtcggca
     3361 aaggcgcggg ttcggacaaa gaacacggcg tagatgccct ctccggcgca tcgctgacat
     3421 ccaaaggcgt gcaaggttcg ttcgcctact ggttcggcga aaacggctat atcccctacc
     3481 tgaacaaatt gaaatcagca ggagcgcaat aatggctgat atgaaacgct tgaaacattt
     3541 gatgttttca ccctttatcg acaacaaccc gattgccttg caggttttgg gtatttgttc
     3601 ggctttggcg gttaccacca aacttcagac ggccatcgtg atgggtattt ccgtagcttt
     3661 ggtaaccggt ttttccagct tcttcatttc gctggtacgc aactacatcc ccaacagcat
     3721 ccgtattatc gtgcaaatgg cgattatcgc gtcgctggtt acgctggtcg accaactctt
     3781 gcaggcattt gcctacgaat tgtccaaaca gctttccgta ttcgtcggtc tgattattac
     3841 caactgtatc gtgatgggcc gcgccgaagc atttgcgatg aaagagccgc cgctggaaag
     3901 cctgatcgac ggcatcggca acggcgcggg ctacgggata atgctgcttg tcgtcgccac
     3961 cgtccgcgaa ctgattggct cgggcaaact cttgggctac accgttttcc aaaccgtgca
     4021 ggacggcggc tggtatcaga ccaacggctt gttcctgctc gcccccagcg cgttcttcat
     4081 catcggcttt ttgatttggg gactgcgtac ctggaaaccc gaacaggcgg aggaataagc
     4141 tatggaacac tatttgagcc tcttcatcaa atccgtcttc attgaaaata tggcactatc
     4201 cttctttttg ggtatgtgca cgtttttggc ggtatccaaa aaagtatcca ccgcattcgg
     4261 tttgggtgtg gcggtaattt tcgtactcgg gctgtccgtc cctgtcaacc aactcgttta
     4321 ctcgctgctc aaagacggcg cgattgtcga aggcgtggat ttgacctttt tgaaattcat
     4381 caccttcatc ggcgtgattg ccgctttggt gcagattttg gaaatgttct tggataaatt
     4441 cgtccccgcc ctctataacg cattgggcat ctacctgccg ctgattaccg tgaactgcgc
     4501 gattttcggc gccgtatcgt ttatggcgca acgcgaatac aacttcggcg agtccgttgt
     4561 atacggcttc ggcgcgggct tgggctggat gttggcgatt gtcgctttgg cgggcattac
     4621 cgaaaaaatg aaatattcgg acgctcccaa aggcctcaaa ggcttgggca ttacctttat
     4681 cgccgccggc ctgatggcga tggcgtttat gtcgttctct ggcatccagt tataagaaag
     4741 ggatcggtat ggagattatt ttaggtatcg tgatgtttac cgtcatcgtt ttggttttgg
     4801 cactgatgat tctgtttgcc aaatccaaac tggtcagcga aggcgacatc accatcaaag
     4861 tcaacggcga aaaagagctg acgatgcccg ccggcggcaa actcttgggc gcgcttgcca
     4921 acgaaggcat ctttatcccc tccgcctgcg gcgggggcgg ttcgtgcgga caatgccgcg
     4981 tcgtcgtaaa aagcggcggc ggcgacatcc tgccgaccga gctgtcccac atcagcaaac
     5041 gcgaagcacg cgaaggctgc cgtctgtcgt gccaagtcaa cgtcaaaacc gacatggaca
     5101 tcgaagtccc cgaagaagtg ttcggcgtga aaaaatggga atgcaccgtc atctccaacg
     5161 ataacaaagc cacgttcatt aaagaactca agcttgccat tcccgaaggc gaagaagtcc
     5221 ccttccgcgc cggcggctac attcaaattg aagccccgcc gcacaccgtt gcctacaaag
     5281 acttcgacat tcccgaggaa taccacgaag actgggacaa atacaatttg tggcaatacg
     5341 tttccaaagt ggacgagccg attttgcgtg cctactctat ggcttcgtat cctgaagaaa
     5401 aaggcatcat tatgctgaac gtgcgtatcg ccacgccgcc cccgcgcgta cctgatgcgc
     5461 ctccgggaca aatgtcgtcc tacatctggt cgctcaaacc cggcgacaaa gttacgattt
     5521 ccggcccgtt cggcgaattt ttcgccaaag acaccgatgc cgaaatggta tttatcggcg
     5581 gcggtgcggg tatggctccg atgcgttccc acattttcga ccagttgaaa cgtttgaact
     5641 ccaaacgtaa gattaccttc tggtacggcg cacgttccaa acgcgagatg ttctatgtcg
     5701 aagactttga ccaactcgcg gcagagttcc cgaacttcac gtggcacgtc gccctgtccg
     5761 acccattgcc tgaagacaac tgggacggct acacaggctt cattcacaac gtggtttacg
     5821 aaaaccatct gaaaaaccac gaagcgccgg aagactgcga attttatatg tgtggtcctc
     5881 cgatcatgaa ccagtccgtc atcaaaatgc ttaaagactt aggcgtggaa gacgaaaaca
     5941 tcctcttgga cgatttcggc ggttaaatat tcggcttcaa acacaaaagg aagaaacctc
     6001 ggtttcttcc tttttttatc cgataccgtc cgaacacctt tcagacggca tcggcataga
     6061 aacataccgg ccgttttgcg atataattca aaccatttgc caaaaccgtc aaacactatg
     6121 ccgtctgaaa cacgcctgcc gaactttatc cgcaccttga tatttgccct gagttttatc
     6181 ttcctgaacg cctgttcgga acaaaccgcg caaaccgtta ccctgcaagg tgaaacgatg
     6241 ggcacgacct ataccgtcaa atacctttca aacaatcggg acaaactccc ctcccctgcc
     6301 gaaatacaaa agcgcatcga tgacgcgctt aaagaagtca accggcagat gtccacctat
     6361 cagcctaatt ccgaaatcag ccggttcaac caaaccacgg ccggcaaacc cctccgcatt
     6421 tcaagcgact tcgcacacgt tactgccgaa gctgtccgcc tgaaccgcct gacacacggc
     6481 gcgctggacg taaccgtcgg ccctttggtc aacctttggg gattcgggcc cgacaaatcc
     6541 gttacccgtg aaccgtcgcc ggaacaaatc aaacaggcgg catcttatac gggcatagac
     6601 aaaatcattt tgaaacaagg caaagattac gcttccttga gcaaaaccca ccccaaggcc
     6661 tatttggatt tatcttcgat tgccaaaggc ttcggcgttg ataaagttgc gggcgaactg
     6721 gaaaaatacg gcattcaaaa ttatctggtc gaaatcggcg gcgagttgca cggcaaaggc
     6781 aaaaacgcgc gcggcgaacc gtggcgcatc ggtatcgagc agcccaatat cgtccaaggc
     6841 ggcaatacgc agattatcgt cccgctgaac aaccgttcgc ttgccacttc cggcgattac
     6901 cgtattttcc acgtcgataa aaacggcaaa cgcctctccc atatcatcaa cccgaacaac
     6961 aaacgaccca tcagccacaa cctcgcctcc atcagcgtgg tcgcagacag tgcgatgacg
     7021 gcggacggct tgtccacagg attattcgta ttgggagaaa ccgaagcctt aaagctggca
     7081 gagcgcgaaa aactcgctgt tttcctgatt gtcagggata aaggcggcta ccgcaccacc
     7141 atgtcttccg aatttgaaaa actgctccgc taaacataca aaccgattag gaaacaccat
     7201 gaaaaccctg ctccttacct tcagcatctt cctgaccgtc atcatcggta tggcggtcgg
     7261 ctatattttc tccaaacgca gcatcaaagg cagttgcggc ggcattactg ccttgggtat
     7321 gaaaaaaatg tgcgactgcg acacaccttg cgacaccctg caaaagaaac tggatgaaga
     7381 aaaacaggca ggcggcatac gggttgaccg ttaacgccga aacaaaatgc cgtctgaagc
     7441 ccgacaggcg ggttctgacg gcattgccgc tttacttcga tcggtttata cgcaaaacgc
     7501 gcttcaggaa ataaatcaga ttattcccca gacgccttca ggcttccttc tgcgccaccg
     7561 taaccatagc cgggcgcaac acgcggtcgg acagcgtata acccttcttc atcacgccca
     7621 ccacggtatt gggttcctgt tcgcttgcca ccgcctgcat cgcctgatgg atattcggat
     7681 cgagcttatc gcccgcttta ggattgattt ccttgatttg cgtagcatca aatgctttct
     7741 gcaactcgtt caaagtcagc tgcacgccca ttttcagcgc atcgaaattg ccgctctgat
     7801 ccaaaagcgc catttccaga taatccttga ccggcaacat ttctactgca aacttctgtc
     7861 cggcgaactt gtgtgtatcg gcaatttcct gctgatggcg gcggcgcagg ttctgctcgt
     7921 ttgccaaagc acgcagctgc tcgtctttca actgcgcttc cagatcggca acacgcgcct
     7981 gcaaatcctc ataagtcggc tcggcggcag cctgctcctg cacaccgtcc gcatttccta
     8041 ctgtctcgac ggtttccacc gcctccacat tttcaaccgc ttcttcactg ttttgctgct
     8101 gtgtctgttc gctcatatcg tatcccttaa aacaaattgg aaatcaaaat ccagttatta
     8161 cccgcgcaag ataaggacat tttcaagaaa cttcaagcaa aagcagagaa tttcaaattc
     8221 attttcaaat cccctaccga aaaaataata tagacggtaa gatactgccg accatatcga
     8281 ttttcaaacg tcatcactca tgaaaaaaga ccatttaaac acaaccggtt tcgacctctg
     8341 gcacaccatc cgcgaagaaa ccgcggccgc ggtctccgcc gaaccgatgc tggcaagttt
     8401 tttgcaccaa accgtgttgc gccacgagtc cctcggctcc gtccttgcct accacctttc
     8461 cagcaaactc ggcagcccga ttatggacgt gcgcgcgctg tttgaaatct accagcaggc
     8521 gttgggcagc gacacccaaa tcggcaaatg cgtcgaagca gacttaaaag ccatctacga
     8581 acgcgatccc gcctgcgacg aatattcgct gccgctttta tatttcaaag gcttccacgc
     8641 gattcaggca caccgcatca accatcggct gtatctcgac gggcgcaaaa cgctggcgta
     8701 tttcctgcaa aaccgtatgt ccgaagtatt cggcgtggac atccatcccg ccgcccgttt
     8761 cggatacggg ctgatgctcg accacgccac cggctttgtt gccggcgaaa ccgccgtgtt
     8821 gggcaacaat atttcgattt tgcacggcgt aacgctcggc ggttcgggca aagaatgcgg
     8881 cgaccgccac cctaaaatcg gcgacggcgt gatgatcggc gcaaacgcct cgatattggg
     8941 caatatccgc atcggcagca atgccaaaat cggggcgggc agcgtcgtgg tttcagacgt
     9001 gccgccgtcc atcacggttg tcggcgtacc cgccaaaccc gtggcgcgat cgctcaaaac
     9061 accgtcggcg gatatggatc aaaatatcca gtttaccgaa atcgacttta tgatttgaat
     9121 atccgcacca atgccgtctg aaacgccaaa cgtgcttcag acggcattgc ccgcttcaag
     9181 cctgcgcctt gatatgccgc cgatgccggc acttgccagt cggacaaaat gccttttatt
     9241 cgatacaccc gattcccacg caaccg
//
LOCUS       DAXHPV010000069         9238 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.069, whole genome shotgun sequence.
ACCESSION   DAXHPV010000069 DAXHPV010000000
VERSION     DAXHPV010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9238)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9238)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9238
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.069"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            89..298
                     /locus_tag="ACFM6C_001182"
     CDS             89..298
                     /locus_tag="ACFM6C_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003674694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HFC6158641.1"
                     /translation="MPYVNIKVTGGKEAPTAAQKAELIGGVTELLARVLGKNPETTVV
                     VIDEVDTDNWGIGGKSVSERRKEGR"
     gene            387..1601
                     /locus_tag="ACFM6C_001183"
     CDS             387..1601
                     /locus_tag="ACFM6C_001183"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HFC6158642.1"
                     /translation="MDKFPKSAKLDHVCYDIRGPVHKKALQLEEEGNKILKLNIGNPA
                     PFGFEAPDEILVDVIRNLPTSQGYCDSKGLYSARKAIVHYYQTKGLRDITVNDVYIGN
                     GVSELITMSMQALLNDGDEILIPAPDYPLWTAAATLAGGTVRHYLCDEENGWFPNLAD
                     MEAKITPKTKAIVVINPNNPTGAVYSREILLEIAELARKHGLIIFADEIYDKILYDGA
                     VHHHIAALAPDLLTVTFNGLSKAYRVAGFRQGWMVLNGPKHHAKGYIEGLDMLSSMRL
                     CANTPMQHAIQTALGGYQSINEFILPGGRLLEQRNRAWELVSQIPGVSCVKPMGAMYM
                     FPKIDTEMYRIRDDMKFVYDLLVREKVLLVQGTGFNWIKPDHFRIVTLPYVHQIEEAM
                     GRLARFLQTYRQ"
     gene            complement(1688..4267)
                     /gene="clpB"
                     /locus_tag="ACFM6C_001184"
     CDS             complement(1688..4267)
                     /gene="clpB"
                     /locus_tag="ACFM6C_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA];
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HFC6158643.1"
                     /translation="MRYDKLTAKFQQALAEAQSLALAADGSYLEAGFVLKALLDDQNS
                     GAAALLAHAGVNMPQVKQRLQQHLNSLPKVSGQGGDILPSRELQAVLNLMDKAATKRG
                     DAYIASELFLLALVQQNDATGKILKEAGATEQNINAAIDAVRGGQNVNDANAEDQRDA
                     LKKYTLDLTQRARDGKLDPVIGRDDEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEG
                     LAQRIVNGEVPESLRNKRLLVLDLAALIAGAKYRGEFEERLKGVLNDLAKDDGNTLIF
                     IDEIHTLVGAGKTDGAMDAGNMLKPALARGELHCIGATTLDEYRQYIEKDAALERRFQ
                     KVLVGEPSVEDTIAILRGLQERYEIHHGIDITDPAIVAAAELSDRYITDRFLPDKAID
                     LIDEAASRVKMEKETKPEAMDKIDRRLIQLRMEKAHVEKEKDDASKKRLELIDEEING
                     LQKEYADLDEIWKAEKAISDGTANIKKQIDEVKIKIEQAKRQGDLALASKLMYEDLEH
                     LEKQRAAAERADTDSTKPANKLLRNNVGAEEIAEVVSRMTGIPVSKMMEGERDKLLKM
                     EEVLHRRVVGQDEAVRAVSDAIRRSRSGLADPNKPYGSFLFLGPTGVGKTELCKALAG
                     FLFDSEDHLIRIDMSEYMEKHAVARLIGAPPGYVGYEEGGYLTEQVRRKPYSVILLDE
                     VEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGSQHIQQMGTQDYEAV
                     KEVVMEDVKEHFRPEMINRIDEVVVFHGLDQDNIRNIAKIQLKGLEKRLEKQNLRLAV
                     SDAALDIIAKAGFDPIYGARPLKRAIQSEIENPLAKALLAGNYAPESEIRVEADGDRL
                     KFA"
     gene            4528..5538
                     /gene="trpS"
                     /locus_tag="ACFM6C_001185"
     CDS             4528..5538
                     /gene="trpS"
                     /locus_tag="ACFM6C_001185"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HFC6158644.1"
                     /translation="MSKKRVLTGVTTTGIPHLGNYVGAIRPAVRAAQNPDTESFLFLA
                     DYHGIIKCHEPEMIHQSTQAVAATWLACGLDPERTTFYRQSDIPEVMELNWILTCITA
                     KGLMNRAHAYKAAVQANAENGQEDPDFGVEMGLFSYPILMTADILMFNANEVPVGRDQ
                     IQHVEMARDIAGRFNHRFQELFTLPEVKIDENVELLVGLDGRKMSKSYGNTIPLWEND
                     KKTQKSVNKIITNMKEPGEPKQPDESPLFEIYKAFSTPSETAEFTKMLADGLAWGEAK
                     KLLAAKINAELAEPRERYNELTADPSQIEEILQAGAQKARKEARELLDKVRDAVGIRP
                     LK"
     gene            5544..5885
                     /locus_tag="ACFM6C_001186"
     CDS             5544..5885
                     /locus_tag="ACFM6C_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158645.1"
                     /translation="MPSEPLKGLPEQNVVRLTGKHPGDLEAVSGKCMETDGKGAPSGW
                     AANGVCHTLFAKLVGNIAEDGGKLTDYLISHSALQPYQAGKSGYAAVQNGRYVLEIDS
                     EGAFYFRRRHY"
     gene            6206..6529
                     /locus_tag="ACFM6C_001187"
     CDS             6206..6529
                     /locus_tag="ACFM6C_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003674689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158646.1"
                     /translation="MKKLLIAAMMAAALAACSQEAKQEVKEAVQAVESDVKDTAASAA
                     ESAASAVEEAKDQVKDAAADAKASAEEAVTEAKEAVTEAAKDTLNKAADATQEAADKM
                     KDAAK"
     gene            complement(6738..8246)
                     /gene="ppx"
                     /locus_tag="ACFM6C_001188"
     CDS             complement(6738..8246)
                     /gene="ppx"
                     /locus_tag="ACFM6C_001188"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004309 - exopolyphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006798 - polyphosphate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HFC6158647.1"
                     /translation="MTTHPANVLASVDLGSNSFRLQICENNNGQLKVIDSFKQMVRFA
                     AGLDEQKNLSAASQEQALDCLAKFGERLRGFRPEQVRAVATNTFRVAKNIADFLPKAE
                     AALGFPIEIIAGREEARLIYTGVIHTLPPGGGKMLVIDIGGGSTEFVIGSTLNPDITE
                     SLPLGCVTYSLRFFQNKIIAKDFQAAISAARNEIQRISKNMRREGWDSAVGTSGSAKS
                     IRDVLAAEMPQEADITYKGMRALAERIIEAGSVKKAKFENLKPERIEVFAGGLAVMMA
                     AFEEMKLDRMTVTEAALRDGVFYDLIGRGLNEDMRGQTVAEFQHRYHVSLNQAKRTAE
                     TAQTFMDSLCHAKNVTVQELALWQQYLGRAAALHEIGLDIAHTGYHKHSAYILENADM
                     PGFSRKEQTILAQLVIGHRGDMKKMSGIIGTNEMLWYAVLSLRLAALFCRSRQDLSFP
                     KNMQLRTDTESCGFILRIDREWLERHPLIADALEYESVQWQKINMPFKVEAV"
     gene            complement(8362..9202)
                     /locus_tag="ACFM6C_001189"
                     /pseudo
     CDS             complement(8362..9202)
                     /locus_tag="ACFM6C_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714481.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="surface lipoprotein assembly modifier"
BASE COUNT         2136 a         2397 c         2439 g         2266 t
ORIGIN      
        1 gatttgaatt tttcagaaaa tgaagcggac gtttgggcgg aggcaacttg tttgataaga
       61 tagcaatatt tcaaaacgga gaaagatcat gccttatgtc aatattaaag taaccggcgg
      121 caaggaagca ccgactgccg cgcaaaaagc ggaactgatc ggcggcgtaa ccgaattgct
      181 ggcacgcgtg ctgggcaaaa atcccgaaac aacggttgtc gtgattgacg aagtggatac
      241 cgataactgg ggaataggcg gcaaaagcgt cagcgaacgg cgcaaagagg gcaggtaaaa
      301 agcctgaaaa tctcggtttg atgctttaaa ttccgcgtga aaaagagtac attcccaccc
      361 attgcccaaa atttacggaa cacattatgg ataaatttcc caagtctgca aagctcgatc
      421 acgtctgtta cgacatacgc gggccggttc acaaaaaagc ccttcagttg gaagaggagg
      481 gcaataaaat ccttaaactc aatatcggca accctgcgcc gttcggcttt gaagcccctg
      541 atgaaatctt ggtcgatgtc atccgcaacc tgccgacttc gcaaggctat tgcgattcta
      601 aagggctgta ttccgcccgc aaagccattg ttcactacta tcagaccaaa ggtttgcgcg
      661 atattacggt aaacgatgtc tatatcggca acggcgtgtc cgagctgatt acgatgtcta
      721 tgcaggcatt gctcaacgac ggcgacgaaa tcctgattcc cgcgcccgac taccctttgt
      781 ggacggcggc ggcaacgctt gcgggcggta cggtacgcca ttatctgtgc gacgaagaaa
      841 acggctggtt ccccaacctt gccgatatgg aagccaaaat cacgcccaaa accaaagcca
      901 tcgtcgtcat caatcccaat aatccgacag gcgcggtgta cagcagggaa atcctgttgg
      961 aaatcgccga actggcgcgc aagcacggtt tgattatttt cgccgacgag atttacgata
     1021 aaatccttta tgacggcgcg gttcaccacc atattgccgc gcttgccccc gaccttttga
     1081 cggtaacgtt caacggtttg tccaaagcct accgcgtcgc cggattccgc caaggctgga
     1141 tggtgctcaa cgggccgaaa catcatgcaa aaggttacat cgagggtttg gatatgctct
     1201 cgtctatgcg cctgtgtgcc aatacgccga tgcagcacgc gattcagacg gcattgggcg
     1261 gctatcagag cattaacgaa tttatcctgc cgggcgggcg gcttttggaa cagcgcaaca
     1321 gggcgtggga actggtcagc caaatccccg gcgtgtcctg cgtcaaaccg atgggcgcga
     1381 tgtatatgtt cccgaaaatc gataccgaaa tgtaccgcat ccgcgatgac atgaaattcg
     1441 tttacgattt gctggtgcgc gaaaaagtct tgctggtaca gggaacgggg tttaattgga
     1501 tcaagcccga ccatttccgc attgtcacgc tgccttacgt ccatcagatt gaagaggcga
     1561 tgggcaggct ggcaagattc ctgcaaacct accgccaata aggggacggt ttgtctgccg
     1621 aggataaaaa atgccgtctg aaacggagat tcccgtttca gacggcattt ccaacagcag
     1681 gaacaaatta ggcaaatttc agtctgtcgc cgtcggcttc caccctgatt tcgctttcgg
     1741 gcgcatagtt tccggcaagc agggcttttg ccagcgggtt ttcgatttcc gactggatgg
     1801 cgcgtttgag cggacgtgcg ccgtaaatcg ggtcgaaacc ggctttggcg atgatgtcca
     1861 gtgcggcatc ggaaacagcc aggcgcaggt tttgtttttc caaacgtttt tccaagcctt
     1921 tgagctggat tttcgcaatg ttgcggatat tatcctgatc cagtccgtgg aacacgacca
     1981 cttcgtcgat acggttgatc atttcaggac ggaaatgttc tttcacatcc tccatcacaa
     2041 cttctttcac cgcttcgtag tcttgagtac ccatttgttg gatatgttgg ctaccaatat
     2101 tggaagtcat cacgataacg gtatttttga agtccacggt gcgaccttgt ccgtcggtca
     2161 agcggccgtc atccaatact tgcagcagga tgttgaacac atcgggatgg gctttttcca
     2221 cttcgtccag cagaatcacg ctgtacggtt tgcggcgcac ttgttcggtc aggtagccgc
     2281 cttcttcgta gccgacatag cccggaggcg cgccgattaa gcgggcaacg gcgtgttttt
     2341 ccatatattc ggacatatcg atgcgaatca gatgatcttc gctgtcgaac agaaagcctg
     2401 ccagggcttt acacaactcg gttttaccca cgccggtcgg gcccaagaac aggaagctgc
     2461 cgtaaggctt gttcggatcg gcaagaccgg agcggctgcg gcggatagcg tcggacacgg
     2521 cacgcacggc ttcgtcctgt ccgaccacgc ggcggtgcaa tacttcttcc attttcagca
     2581 gtttgtcgcg ttcgccttcc atcattttgg atacgggaat gccggtcata cgggaaacca
     2641 cctctgcgat ttcctctgcg ccgacattat tacgcaagag tttgtttgcc ggttttgtgc
     2701 tgtccgtatc tgcccgttcg gcggctgcac gctgtttttc caaatgctcc aaatcttcat
     2761 acatcaattt tgaagccagt gccaaatcgc cttgccgttt tgcctgttcg attttaattt
     2821 tgacttcgtc aatttgtttc ttaatattag cagtaccgtc tgaaattgct ttttcggctt
     2881 tccagatttc gtctaaatcg gcgtattctt tttgcagacc gttgatttcc tcgtctatca
     2941 gttccaaacg ttttttgctg gcatcgtctt tttctttttc aacgtgcgcc ttttccatcc
     3001 gaagctgaat tagacggcgg tcgattttgt ccattgcttc cggcttggtt tctttttcca
     3061 tcttgacacg gctggcggct tcgtcaatca aatcaatcgc tttatcgggc aggaagcggt
     3121 cggtaatgta gcggtcgctc aactccgctg cggcaacgat agcagggtcg gtaatatcga
     3181 taccatggtg gatttcataa cgctcctgta aaccgcgcaa aatagcgatg gtgtcttcca
     3241 cgcttggctc gccaaccaat actttttgga agcggcgttc gagtgccgca tctttttcga
     3301 tgtattggcg gtattcgtcc aaagtggtcg cgccgataca gtgcaattcg ccacgtgcca
     3361 aagccggttt cagcatattg cccgcatcca tcgcaccgtc ggttttgcct gcgccgacca
     3421 aagtatggat ttcgtcgatg aaaatcagag tgttgccgtc gtctttcgcc aaatcgttca
     3481 acacgccttt caagcgttct tcaaattcgc cgcggtattt cgcgccggca atcaaagccg
     3541 ccaagtccag aaccaaaagg cgtttgttac gcagggattc aggcacttcg ccgttgacga
     3601 tacgttgcgc caagccttca acaatagcgg ttttacccac acccggctca ccaatcagca
     3661 cagggttgtt tttggtacgg cgttgcaata cctgaattgc acggcggatt tcgtcgtcac
     3721 gaccgataac ggggtcgagc ttaccgtctc gggcgcgttg ggtcagatcg agcgtgtatt
     3781 ttttcagcgc atcgcgttgg tcttcggcat tggcatcgtt cacgttttgt cctcctcgta
     3841 ccgcgtcaat cgcggcattg atgttttgtt cggtcgcgcc ggcttctttc aaaattttgc
     3901 cggtcgcatc gttctgctgc accaaggcaa gcaggaaaag ttcactggcg atataggcat
     3961 caccgcgttt ggtggcagcc ttgtccatca ggttcaacac cgcctgcaat tcgcggctgg
     4021 gcagaatgtc gccgccctga ccggacactt tcggcaggct gtttaaatgc tgctgcaaac
     4081 gctgtttcac ttgcggcatg ttcacgcccg catgagccaa gagcgcggcg gctccgctgt
     4141 tttggtcgtc aagcagggct tttaacacaa agcccgcttc cagatagctg ccgtccgcag
     4201 ccaacgccaa actctgagct tctgcaaggg cttgttggaa tttggcggtt aatttgtcgt
     4261 atcgcatttt tgtttccttt tcaaaatgtc cgctgtcgaa gcctatatgt gcataattgt
     4321 ggataactca agttctgttt tctgtttttc tatatttaat tcgatatatc attgaattta
     4381 aagtatataa aaatgtataa taatgtgtat aactatatct tcttaatatg gaaaagtctg
     4441 ttgtcggctg gatgtaggtg gcaaatcggg tataatcggc gcatcttttt ccctttcaga
     4501 cggcattgat gccgcaagga catttttatg agcaaaaaac gagttctgac cggcgtaacc
     4561 accaccggca tcccgcattt gggcaactac gtcggcgcca tccgccccgc cgtccgcgcg
     4621 gcgcaaaacc ccgataccga atccttcctc ttcctcgccg actaccacgg catcatcaaa
     4681 tgccacgagc cggagatgat tcaccaatcc acccaagccg ttgccgccac ttggcttgcc
     4741 tgcggactcg accccgagcg caccaccttc taccgccaaa gcgacattcc cgaagtgatg
     4801 gaattgaact ggattctgac ctgcattacc gccaagggtt tgatgaatcg cgcccacgcc
     4861 tacaaagccg ccgtgcaggc aaatgcggaa aacgggcagg aagaccccga ttttggcgtg
     4921 gaaatgggtt tgttcagtta tccgattctg atgactgccg acatccttat gttcaacgcc
     4981 aacgaagtgc ccgtcggacg cgaccaaatc caacacgtcg aaatggcgcg cgacattgcc
     5041 ggacgcttca accaccgttt ccaagaactc ttcaccctgc ccgaagtgaa aatcgacgaa
     5101 aacgtcgaac tcttggtcgg tttggacgga cgcaaaatgt ccaaatccta cggcaacacc
     5161 attccgcttt gggaaaacga caaaaaaacc caaaaatcgg tcaacaaaat catcaccaat
     5221 atgaaagagc cgggcgagcc gaaacagccc gacgaaagcc cattgtttga aatctacaaa
     5281 gccttctcca cgccgtctga aacggcagaa tttacgaaaa tgcttgccga tggcttggct
     5341 tggggcgagg caaaaaaact tttggcggcg aaaatcaacg ccgaactcgc cgaaccgcgc
     5401 gaacgctaca acgagctgac cgccgaccct tcgcaaatcg aagagatttt gcaggcaggc
     5461 gcgcaaaaag cgcgtaaaga agcacgcgaa ttgttggaca aagtacgcga tgcggtcggc
     5521 atccgcccgt tgaaataaac ccgatgccgt ccgaacctct taaaggcttg ccggaacaaa
     5581 acgtcgtccg gctgaccggc aagcatcccg gcgacttgga agccgtcagc ggcaaatgta
     5641 tggaaaccga cggaaagggc gcaccttcgg gctgggcggc aaacggcgtg tgccatacct
     5701 tgtttgccaa actggtgggc aatatcgccg aagacggcgg caaactgacg gattacctga
     5761 tttcgcattc cgccctgcaa ccctatcagg caggcaaaag cggctatgcc gccgtgcaga
     5821 acggacgcta tgtgctggaa atcgacagcg agggggcgtt ttatttccgc cgccgccatt
     5881 attgaggtat tcggacatcc cggaatatat ttgggttttt caaaccctgc aggaaaaagt
     5941 ccgcaccgtc gggaaactca aaaggagggg gatatgtgtt acaattttcc gaactgtttt
     6001 cataaaatag ttttcggacg tgtttcaata tggcattgat gccgccttat tgttcgagaa
     6061 aaaaaccttt atatttaaat ataattgggt tttaactaaa tgggaaaccg ttttctctcc
     6121 ggccgatggg caaaatcagc cgattgatgg aacacggtcc gatttttaag caaaacctta
     6181 atcaacaact caagaaggat aagacatgaa aaaattattg attgccgcaa tgatggcggc
     6241 tgccttggca gcttgttcgc aagaagccaa acaggaggtt aaggaagcgg ttcaagccgt
     6301 tgagtccgat gttaaagaca ctgcggcttc tgccgccgag tctgccgctt ctgccgtcga
     6361 agaagcgaaa gaccaagtca aagatgctgc ggctgatgca aaggcaagtg ccgaggaagc
     6421 tgtaactgaa gccaaagaag ctgtaactga agcagctaaa gatactttga acaaagctgc
     6481 cgacgcgact caggaagcgg cagacaaaat gaaagatgcc gccaaataat ttgttgcctt
     6541 ggcaaaaatg atgggatgcc gcctgccggc aacccaaacg aaaccgcctg aagattttca
     6601 ggcggttttt gagttgtatg ccccttgttt tttacgcctg catgaccgtt ccgagcagat
     6661 gtgccgcgca tatcgggatg ttgcggacag gcaaatgccg tctggacagg gtttggacgg
     6721 aatttgttcc gtaaggttca gacggcctcg actttaaacg gcatattgat tttttgccat
     6781 tggacgcttt catattccaa tgcgtcggca atcaggggat ggcgttccag ccattccctg
     6841 tcaatacgca ggatgaagcc gcagctttcc gtatccgtgc gcaactgcat atttttcggg
     6901 aaagacaggt cttggcgcga acggcagaac agggcagcaa ggcgcaggga caaaacggca
     6961 taccacaaca tttcgttggt gccgatgatg ccgctcattt ttttcatatc gccgcgatga
     7021 ccgatgacca gttgggcaag tatggtttgt tccttgcgtg aaaagcccgg catatcggcg
     7081 ttttcgagga tgtaggcgga atgcttgtga tagccggtgt gggcgatgtc caaaccgatt
     7141 tcgtgcagcg cggcggcgcg tccgagatac tgttgccaca aggcaagctc ttgaaccgta
     7201 acatttttag cgtggcagag gctgtccata aaggtttgcg cggtctcggc ggtgcgtttc
     7261 gcctgattga ggctgacgtg gtagcggtgt tggaactcgg caaccgtttg tccgcgcata
     7321 tcttcgttta aaccgcgccc gatcaaatcg taaaacacgc cgtcgcgcag ggcggcttcg
     7381 gttacggtca tcctgtcgag tttcatttct tcaaacgccg ccatcatcac ggcaagtccg
     7441 ccggcaaaaa cttcgatgcg ttccggtttc aggttttcaa atttggcttt tttgaccgaa
     7501 ccggcttcga tgatgcgttc ggcgagggcg cgcattcctt tgtaggtaat gtccgcctct
     7561 tggggcattt cggcggcaag cacgtcgcgg atggattttg ccgaacccga tgtgccgacg
     7621 gcggaatccc aaccttcgcg cctcatattt ttgctgatgc gctggatttc gttgcgggcg
     7681 gcggaaatgg cggcttggaa gtctttggcg atgattttgt tttggaagaa gcgcaggctg
     7741 taggttacgc agcccaaggg caggctttca gtaatgtcgg gattcagcgt cgagccgatg
     7801 acaaattctg tcgaaccgcc gccgatgtcg ataaccagca ttttgccgcc gcccgggggg
     7861 agggtgtgga tcacgccggt ataaatcagc cgcgcctctt cgcgcccggc gatgatttcg
     7921 atggggaaac ccagtgccgc ttcggctttg ggaaggaaat ctgcgatgtt tttggcgacg
     7981 cggaatgtat tggttgccac ggcgcgtacc tgttcagggc ggaagccgcg caggcgttcg
     8041 ccgaattttg ccagacagtc caaagcctgt tcttgggaag cggcactcag gtttttctgt
     8101 tcgtccagtc cggcggcgaa gcgcaccatc tgtttgaacg aatcgatgac ttttaattgt
     8161 ccgttgttgt tttcgcaaat ctggaggcgg aaactgttgg aacccaaatc gacggaggcg
     8221 aggacgtttg cgggatgggt ggtcatggtg gataccggtg ggggaaaaac gcaatgttac
     8281 tctgacggcg caggcgttga caataaatga tgcggcggtt tttgattctg cccacggatg
     8341 ttgccgacgg catttttgcg cttatttgaa atccttttcc acgctcatga aaatctgcgt
     8401 gtttttgcgt gtgtaaaaac ttttcatatt gctgtcgatt ttcagatagc ggaaattgag
     8461 ttgcggcgta aagcccttcc aagagatttt gtcgtgccac aacgacaggt ttgcctgata
     8521 ttcgtggtct ttgcgcggga agcggtacac aatggtcccg ggtgcgtcaa acatcctgcg
     8581 ggtatagcgc aggtttgccc gcagacccaa gcccgccgtc gaacgttttg actgcgccga
     8641 cacgcaaacc cttgcggacg gaagcctgtt ccgcctcttt cgtcatgttg tgcgaccagt
     8701 ccgcaccgcc gtaaagcagc cagtctttag gcgcggaata catcagcgtc gcgcccgcca
     8761 gcggcatatg gctgtcgtat cgggcggcgg tgcggtcttc ctgataacgc ttccacatat
     8821 tgcccacgtt cagcgtcagc cgccagcgtt cgctcaagcg tcgggagaaa tcggcattga
     8881 agccgccgac gaaattgtat cggctgccgc ctaagaggtt ttgcccgata aacggcacga
     8941 tgccgaacga gcgcgttacc gaacgatttt tatagccgag cgacaggcgc aggcactgtt
     9001 cgctgaaatc tttgttatcc caataatgca cgccgccgcc gctgatgccg ccgtagagga
     9061 aatgatgccc gcccgcattg atttcgcgcg acacgcctaa gccctagcgc aaaccgtgtg
     9121 ccttttgcgg caggctgtcg gcggttttcg tccagcttct gcccgcaaat tcaatcgttt
     9181 ttttggacga agcgttgttt atagcggatt aacaaaaatc aggacaaggc gacgaagc
//
LOCUS       DAXHPV010000070         9171 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.070, whole genome shotgun sequence.
ACCESSION   DAXHPV010000070 DAXHPV010000000
VERSION     DAXHPV010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9171)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9171)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9171
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.070"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(227..1663)
                     /locus_tag="ACFM6C_001190"
     CDS             complement(227..1663)
                     /locus_tag="ACFM6C_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFC6158648.1"
                     /translation="MFIKSICLSNFKGFIGDNHQIKFKIPDGATAGSGLNIFIGENNS
                     GKSSIFEAINFLRNGIKEDEAYRIKSKLADDTQPNDACVELAFCGNIQNAITYFVQRN
                     KQAAFNNAINNEQNLKAKRNTVSCKKLDLWDNESQDYSNPSGIDAPFKALFETNFIWA
                     DTNPNDEAAFGSTTLCGLLLKEIAQAHINSAEYQTFRDSFNQVFNSPASNLRQQIATI
                     EQKVQRIFTEQFGQADIHFRFDELKIDSFFKNASIFIDDGVDIPMSEKGNGMQRSVAL
                     ALLQVYAEELAHDEEQGQTKPFYLFIDEPELCLHPKGQTKLLEALLEISRTKQVFLTT
                     HSPYFLVTPHLSNVGLFIFRKDGISNIVEDASLEPMFPWSPTWGEINFKAYKLPTVEL
                     HNELYGKLQHDCGQFREKDFEQWLQSRNIQFTKQWIRENNGAAQAPYDVTLQTFIRNH
                     IHHPENRRNALYTENELRQSIEEMIRLL"
     gene            complement(1812..3191)
                     /gene="norM"
                     /locus_tag="ACFM6C_001191"
     CDS             complement(1812..3191)
                     /gene="norM"
                     /locus_tag="ACFM6C_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MATE transporter NorM"
                     /protein_id="HFC6158649.1"
                     /translation="MLLDLNRFSFSVFLKEIRLLTALALPMLLAQVAQVGIGFVDTVM
                     AGGAGKEDLAAVALGSSAFATVYITFMGIMAALNPMIAQLYGAGKTDEVGETGRQGIW
                     FGLFLGVFGMVLMWAAITPFRNWLTLSDYVEGTMAQYMLFTSLAMPAAMVHRALHAYA
                     SSLNRPRLIMLVSFAAFVLNVPLNYIFVYGKFGMPALGGAGCGLATMAVFWFSALALW
                     IYIAKENFFRPFGLTAKFGKPDWAVFKQIWKIGAPIGLSYFLEASAFSFIVFLIAPFG
                     EDYVAAQQVGISLSGILYMIPQSVGSAGTVRIGFSLGRREFSRARYISGVSLVLGWML
                     AVITVLSLVLFRSPLVSMYNNDPAVLSIAATVLLFAGLFQPADFTQCIASYALRGYKV
                     TKVPMFIHAAAFWGCGLLPGYLLAYRFDMGIYGFWTALIASLTIAAIALVWCLELCSR
                     EMVRSHKAV"
     gene            3526..4677
                     /locus_tag="ACFM6C_001192"
     CDS             3526..4677
                     /locus_tag="ACFM6C_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HFC6158650.1"
                     /translation="MQTWQLPEHIADVLPTNARQLESAREQLLALFRVHGYELVQPPL
                     MEYAHSLLTHIDAGLSLKTILVTDRLSGRQLGIRADITPQVARIDAHLLSANQGINRL
                     CYAGPVLHAQPDGLLNMREPLQAGAEMYGFADIRGDIELIDLMLKSMKIADMGKVLLS
                     LGHIGIFRALSDAAHLDAGQSATLLALMQDKDTGAVEAQVKAWKLDGMWAKAFSLLPR
                     LYGGREVLSDARGRLPDLSAVGGALGELQAVCDAFPDCEIHIDLSELRVDNYHTGLLY
                     AAYAADFHDAVARGGRYDGLGGYFGRARPATGFSFDLRSFIGRLPAIERQPAVLVDAE
                     DAEAAREAVEALREQGQCVVIDYGIGHNVSEELAGRLKKTDGVWQVVKR"
     gene            4781..6079
                     /locus_tag="ACFM6C_001193"
     CDS             4781..6079
                     /locus_tag="ACFM6C_001193"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HFC6158651.1"
                     /translation="MAKNVVVIGAQWGDEGKGKIVDWLAEEAGGVVRFQGGHNAGHTL
                     VVGGKKTILRLIPSGILHESLDCFIGSGVVVSPEALLGEIDELNAAGVKNVEGRLKIA
                     PTCPLILPYHIALDQAREASRGKGKIGTTGRGIGPAYEDKVARRAIRAADLLHPEKLR
                     EKLDAVLAYYNVQLQHLHNAEPVKAEDVMAVIEKVAPRIAPMITDVSRVLNEKNKNGE
                     KLLFEGAQGALLDIDYGTYPFVTSSNCLAGAASAGAGVGPQMLDYVLGIVKAYTTRVG
                     SGPFPTELFDEVGAGLAERGHEFGSVTGRARRCGWFDAAALKRSIQINGISGMCITKL
                     DVMDGVETINICVGYELPDGGKTDILPCGSDAVETCKPIYETMEGWKESTFGIKNYEE
                     LPDNAKAYLKRIEEVCGAPVAIVSTGPDREETIVLHHPFA"
     gene            6544..6927
                     /locus_tag="ACFM6C_001194"
     CDS             6544..6927
                     /locus_tag="ACFM6C_001194"
                     /inference="COORDINATES: protein motif:HMM:NF017109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF723 domain-containing protein"
                     /protein_id="HFC6158652.1"
                     /translation="MPKSLSLQDVQLRFSSKFPDKTVLKFTKNYEPVTIQCPLHGSVV
                     YGNLQAAMKSSTGCPECTRNPEKPSPNAVAIRLEDTETGEIYEFASTLAASKFIGCSN
                     STLAVRLSGRTPFDRLIRYRYRLVK"
     gene            6941..7351
                     /locus_tag="ACFM6C_001195"
     CDS             6941..7351
                     /locus_tag="ACFM6C_001195"
                     /inference="COORDINATES: protein motif:HMM:NF017109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF723 domain-containing protein"
                     /protein_id="HFC6158653.1"
                     /translation="MALTFTQAVSKLTSKFPHLNLVEFNGVRYPTVIVCPIHGRVTCS
                     TFKSMLDSKSGCPKCASYGVNSHKIPEDTIDKLSKNTVLEDTVTGETLTFPSRASAAR
                     SLGINPAAITDRIKGRVHTETLLAGRYKVHICTK"
     gene            7468..7860
                     /locus_tag="ACFM6C_001196"
     CDS             7468..7860
                     /locus_tag="ACFM6C_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF723 domain-containing protein"
                     /protein_id="HFC6158654.1"
                     /translation="MAKSFNQAASELTDIFPNISLTGFDGVNYPVTVNCPMHGNVRYS
                     TFNALIKSKYGCPECAKMSKTQTPPNVGKPLLILDTTTNETLTFPSVTAAGAALGVHF
                     QQINHRLKGRTSPDNLISNRYKVLGYDR"
     gene            8080..8460
                     /locus_tag="ACFM6C_001197"
     CDS             8080..8460
                     /locus_tag="ACFM6C_001197"
                     /inference="COORDINATES: protein motif:HMM:NF017109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF723 domain-containing protein"
                     /protein_id="HFC6158655.1"
                     /translation="MTFDTAKSRFQEKFPHLELLEFSGIYKPSSVRCPTHGVVQLLYY
                     DTAIKSKYGCPECGKLKMKENTPPQNQKPVSILDTATGETLTFPSVQAAAKALNTPYG
                     SIRTKLDGRSNPDNLVCNRYKVLL"
     gene            8574..9134
                     /locus_tag="ACFM6C_001198"
     CDS             8574..9134
                     /locus_tag="ACFM6C_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158656.1"
                     /translation="MTANFAQTLVEIQDSLYRVVSTVQYGDDNLKRLTADKRKQYELN
                     FKISEGSTRVESDFKETLVRFGRDMLQDMPPKIRSATLVALTTLLVGGALGYGYLEYL
                     KQVASEGYQTERLYNAVDRLAESQERITSAILKGARGADFVQIGRRSYSREDISEANR
                     RAERVPYGAELVSDGNFTAVLSDIGD"
BASE COUNT         2487 a         2223 c         2192 g         2269 t
ORIGIN      
        1 cagctccata tgtttttatc aaaacaaaga ttaaacaggt ttattgctgt ttatcctcaa
       61 attgtcctta tttcagcagg cgatcaaagt tttttagttt ttaccatcat caacggttac
      121 ccaaaaattt tgaataactg aattttcttc tttgggctag aaagtgtggc ttcagacgac
      181 gttttgaaaa cattgagaga attgaccgca ctttttactc cttcaactat aacaatctaa
      241 tcatttcctc aatagattgt ctaagttcat tttccgtata aagtgcattt cgccgatttt
      301 caggatgatg aatatggttg cggataaatg tttgcaaggt tacgtcatat ggagcttgtg
      361 cggctccatt gttttctcgt atccattgtt tagtgaactg aatattccta ctctgtaacc
      421 attgttcaaa gtctttttct cgaaattgcc cacaatcatg ttgtaatttc ccatataatt
      481 cattatgtaa ctccacggta ggtaatttat acgccttgaa attaatctct ccccaagttg
      541 ggctccaagg aaacattggc tccaatgaag cgtcttcaac aatattgcta attccgtcct
      601 ttctaaaaat aaacagacca acattactta aatgaggtgt aaccaaaaaa tatggggaat
      661 gcgtagtcaa aaatacttgt ttcgttcttg aaatttctaa caacgcctca agtaatttag
      721 tttgcccttt tggatgtaaa caaagctcag gctcatcaat aaacaaataa aacggcttag
      781 tctgaccttg ctcttcatca tgcgctaact cttctgcata gacttgaagc aaggctaatg
      841 caacagaacg ctgcatacca ttaccttttt cggacattgg aatatccaca ccatcgtcaa
      901 taaagataga ggcattttta aaaaacgaat ctatctttag ttcatcaaat ctaaaatgaa
      961 tatcagcttg tccgaattgt tcagtaaaaa tacgttgaac tttctgttcg atagtagcaa
     1021 tttgttgacg caaattagaa gctggtgaat taaatacctg attaaaacta tcacgaaatg
     1081 tttgatattc agccgaattg atatgcgcct gagcaatttc tttcagtaac aatccgcaaa
     1141 gagttgtaga cccgaaagcc gcttcatcat taggatttgt atctgcccaa ataaaattag
     1201 tttcaaaaag agccttaaaa ggagcatcga tcccacttgg atttgaatag tcctgagatt
     1261 cgttatccca caaatccaat ttcttacaag aaactgtatt tctcttagct tttaaattct
     1321 gctcattatt aattgcatta ttaaaagctg cttgtttatt cctttgaaca aaataagtta
     1381 ttgcattttg aatattccca caaaaagcca gctcaacgca tgcgtcattt ggctgagtat
     1441 catctgccag tttacttttt attctataag cttcatcttc tttgataccg ttccttaaga
     1501 aatttatagc ttcaaaaata gacgatttcc cagagttatt ttctccgata aaaatgttca
     1561 aaccactacc agcagttgct ccatcaggaa ttttaaattt aatctgatgg ttatcaccga
     1621 taaacccttt aaaattagat aaacaaatac tttttataaa cataacggtt tccttatctt
     1681 aagttagaaa tagagattaa gctaaaacac caaactctct cccttcaaaa actctaaatt
     1741 ctcctagctc aaccctgcca catcatctat taatattgta attagcagac ttcatcctac
     1801 ccatggagtt ttcagacagc cttatgcgat ctgaccatct ccctactgca caattccaag
     1861 caccacacca aggcgatggc ggcgatggtg agcgaggcaa tcaatgccgt ccagaagccg
     1921 taaatgccca tatcgaaacg gtaggcgagc aggtagcccg gcagcagacc gcagccccaa
     1981 aaggcggcgg cgtggatgaa catcggcacc tttgtaactt tgtagccgcg caaggcgtag
     2041 gaggcgatac attgggtgaa gtctgccggt tggaacaagc cggcgaacag taagacggtg
     2101 gcggcgatgc ttaaaaccgc cggatcattg ttgtacatac ttaccagcgg cgaacggaat
     2161 aataccaagg aaagcacggt aatcacggcg agcatccatc ctaacaccag tgacacgccc
     2221 gaaatataac gcgcccgcga aaattcgcgc cgcccaagcg aaaagccgat gcgcaccgtc
     2281 cccgccgagc cgacgctttg cggaatcata tagagaatcc ccgacaaact gatgccgacc
     2341 tgctgcgccg ccacataatc ctcgccgaaa ggcgcaatca aaaacacgat aaacgaaaac
     2401 gcgctggctt ccaaaaaata agacagcccg atgggtgcgc cgattttcca aatctgtttg
     2461 aacaccgccc aatccggttt gccgaatttc gccgtcagtc cgaatgggcg gaagaaattt
     2521 tccttggcga tataaatcca caatgccagc gcgctgaacc aaaacaccgc catcgtcgcc
     2581 agtccgcagc ctgcgccgcc caaagcgggc ataccgaatt tgccgtaaac gaaaatatag
     2641 ttcagcggca cgttcaacac aaacgccgca aagctgacca acataatcag gcgcgggcgg
     2701 ttcaggctgg aggcgtaggc gtgcagtgcg cggtgtacca ttgccgccgg catcgccaag
     2761 ctggtgaaca gcatatactg cgccattgtg ccttccacat aatcgctcaa ggtcagccag
     2821 ttgcggaacg gcgtaatcgc cgcccacatc aagaccatgc cgaacacgcc caaaaacagc
     2881 ccgaaccaaa tcccctgccg tcccgtttcg cccacttcgt cggttttacc cgcgccgtaa
     2941 agctgggcaa tcatcgggtt cagcgccgcc ataatgccca taaaggtaat ataaaccgtg
     3001 gcaaacgcgc tgctgcccaa agccaccgcc gccaagtctt ccttgcccgc accgcccgcc
     3061 atcacggtat cgacaaaacc gatgcccacc tgcgcgacct gcgccaacag catgggcagg
     3121 gcaagggcgg tcagcaggcg gatttctttc aggaagacgg aaaaggaaaa gcggttgagg
     3181 tcgagcagca taagtgttca atcaacaaaa atgccgtctg aagcagaaaa cggcagcagg
     3241 aagtgatgag aaataatggc gcacattata tagtaaaaaa atgccgtgcc gtcagacggc
     3301 ggatacaggg tataaaagta tattcagatt gtgtgtattt tatggtaaag tttggtttta
     3361 acgacttgac ggcattgagc cgtcggacag gggctgttcg gattctgaat cggaaggaag
     3421 catcgccgtt ttgacagcgg cgtgatgcgt tgcggcaaag atgccgtctg attgcggatc
     3481 gggcagcctt ttgtatttac atgataaaat agaaggcaga ttctcatgca gacatggcag
     3541 cttccggaac atatcgccga cgtactgccc acgaacgcgc ggcagcttga aagcgcgagg
     3601 gagcagttgt tggcactgtt ccgcgtacac ggttatgaac tggtacagcc tccgctgatg
     3661 gagtacgcac attccctgct gacgcatatc gatgcggggc tttccctgaa aaccattttg
     3721 gtaacggaca ggctcagcgg caggcagttg ggcatacgcg ccgacatcac gccgcaggtg
     3781 gcgcgtattg atgcccatct tttatccgcc aaccaaggga ttaaccggtt gtgttatgcc
     3841 ggtccggtgt tgcacgcgca gcccgacggt ctgctgaata tgcgcgaacc cttgcaggca
     3901 ggggcggaaa tgtacggttt tgccgacatc cgtggcgaca tcgagctgat agacctgatg
     3961 ctgaaaagca tgaaaattgc cgatatgggc aaagtgctgc tttcgctggg gcatatcggc
     4021 atattccgcg ccttgtccga tgcggcgcat ttggatgcgg ggcagtccgc aacgctgctt
     4081 gccttgatgc aggataaaga taccggggcg gtcgaagcgc aggtcaaggc ttggaagctg
     4141 gacggcatgt gggcaaaagc attctcgctg ttgccgcgcc tgtacggcgg gcgtgaagtg
     4201 ttgtccgacg cgcgcggacg gttgccggat ttgtcggcgg tcggcggcgc gttgggcgaa
     4261 ttgcaggcgg tgtgcgacgc attccccgat tgtgaaatcc atatcgactt gtccgagctg
     4321 cgtgtcgaca attaccacac gggcttgctg tatgccgcct atgccgccga tttccacgac
     4381 gcggtcgcgc gcggcgggcg ttatgacgga ttgggcggat atttcggcag ggcgcgcccg
     4441 gcaacgggat tcagtttcga cttgcgcagc tttatcgggc gtttgcccgc catcgaacgg
     4501 cagcccgccg tgttggtcga tgcggaagat gccgaagcgg cgcgcgaagc ggtcgaagcc
     4561 ttgcgtgaac aagggcagtg tgtcgtaatc gattacggta tcggacacaa tgtttcggaa
     4621 gagcttgcag gccgtctgaa aaagacggac ggcgtttggc aggtcgtgaa acgctaaata
     4681 cccgttcatg gcggatgaaa ggcaaatcgt ggcggggcgc aaagccgcac cggtttgggg
     4741 atttccgcaa taatttttaa tatcgatagg ttatatggct atggctaaaa atgttgtagt
     4801 aatcggcgca cagtggggcg acgagggtaa aggtaaaatc gttgactggc tggcggaaga
     4861 agccggcggc gtggtgcgct tccaaggcgg ccacaatgcg ggccatacct tggttgtcgg
     4921 cggcaaaaaa accattttgc gcctgattcc gagcggcatc ctgcatgaaa gtttggactg
     4981 cttcatcggt tcgggcgttg tcgtctcccc cgaagccctg ttgggcgaaa tcgacgagtt
     5041 gaacgcggca ggcgtgaaaa acgtcgaagg ccgtctgaaa atcgcgccga cctgcccgct
     5101 gatcctgcct tatcacatcg cgctcgacca agcccgcgaa gcatcgcgcg gcaaaggcaa
     5161 aatcggcacg accggccgcg gcatcggccc tgcctacgaa gacaaagtgg cacgccgcgc
     5221 cattcgcgcc gccgatttgc tgcatcctga aaaactgcgt gaaaaactgg atgccgtcct
     5281 tgcctattac aatgtccaac tgcaacatct gcacaatgcc gagccggtta aagcggaaga
     5341 cgtgatggcg gttatcgaaa aagtcgcgcc gcgcattgcg ccgatgatta ccgacgtgtc
     5401 ccgcgtgttg aacgagaaaa acaaaaacgg cgaaaaactg ctgtttgaag gcgcgcaagg
     5461 tgcgttgttg gacatcgact acggcactta tcccttcgtt acctcgtcca actgtctggc
     5521 gggagccgct tccgcaggcg cgggcgtagg tcctcaaatg ctggattatg ttttgggcat
     5581 cgtcaaagcc tataccacgc gcgtcggttc aggcccgttc ccgaccgaat tgttcgacga
     5641 agtaggcgca ggtttggcgg aacgcggaca cgaattcggc tcggtaaccg gccgcgcacg
     5701 ccgctgcggc tggtttgatg ccgccgccct gaaacgctcc atccaaatca acggcatttc
     5761 cggtatgtgc attaccaaac tcgatgtaat ggacggcgtt gaaaccatca atatctgcgt
     5821 cggctacgaa ttgcccgacg gcggcaaaac cgatatcctg ccttgcggtt cggatgcggt
     5881 ggaaacctgc aaaccgattt acgaaacaat ggagggttgg aaagaatcga ctttcggcat
     5941 caaaaattat gaggaactgc ccgataatgc caaagcatat ttgaaacgga ttgaagaagt
     6001 ctgcggcgcg ccggtcgcca tcgtctccac cggccccgac cgcgaagaaa cgattgtgct
     6061 gcatcatccg ttcgcataag gttttgcagt aaaattgccg tctgaagccc taatccgccg
     6121 ttggtcataa atagtagggt atcaacattt cgggctacaa tggtacgtca gccaatgcca
     6181 agacgtgcca gcctgattgg ttgatgtgtg tactattgca taggcggtta agccatgcag
     6241 gagatgaaag tgtatatttc gcgcaaagcc cattagccgc aagcgagggg cggggtgcgc
     6301 gagagagagg ggggcaggtg ctaagtcatt ggttatctcc ttactatcta tctaactacg
     6361 ggtgcattat gcgcctatgc ctgttgtttg tcaaacacta tacagttaaa atgtgtaaag
     6421 atttagtaag gacatatacc cttttcttta catttagctc catcggatac cagtgcgttc
     6481 agagaaaatt tgaaaatttc tatattttgg ttgtataatg ctttcatttt agaaaggtct
     6541 ataatgccaa aatcactctc gctacaagat gttcagttaa ggttttccag taaatttcct
     6601 gataagacgg ttttgaagtt cactaaaaac tacgaaccgg taacaatcca atgccctttg
     6661 catgggtcgg ttgtttacgg gaatctacaa gctgccatga aatcctcaac aggatgtcct
     6721 gaatgtactc gaaatcccga aaagccctct ccaaacgccg ttgccattag gttggaggac
     6781 acagagacag gggaaatcta cgagtttgca agtacactgg ctgccagtaa atttatcggt
     6841 tgctccaaca gcactttagc tgtacgttta agcggacgca ctccgtttga ccgattgatt
     6901 aggtatcgtt ataggttggt aaagtaagtt cacaaccact atggcactta catttactca
     6961 agcagtttct aagctaacct ctaaatttcc acatttgaat cttgtggagt tcaatggcgt
     7021 tcgttacccg acggtaatcg tctgtcctat acacgggagg gttacttgct ctacattcaa
     7081 aagtatgttg gactctaaaa gtgggtgtcc aaaatgtgca tcttatggtg tcaattccca
     7141 caaaattcca gaagatacaa tagataaatt atctaaaaat acagtattgg aggatactgt
     7201 aactggcgaa acacttacat tcccctcaag agcatctgct gcaaggtcat tgggtataaa
     7261 cccagcagct atcactgacc gtataaaagg tcgggttcac acagagactt tacttgcagg
     7321 gaggtataag gttcacatct gcactaaatg acgtatacac tttttaacag tgtatacccc
     7381 tcgccactat caggtgcttc tcgaaaaatt tgacattttt ataaatttgc tattaaatcc
     7441 atttgacaat caattttgga gtctcaaatg gccaaatctt tcaaccaagc agcttctgaa
     7501 cttactgata tattccctaa tatctctcta accggctttg acggtgtgaa ttacccagta
     7561 accgttaatt gtcctatgca cgggaacgtt cgttattcga catttaatgc ccttataaag
     7621 tcaaagtacg ggtgtcctga gtgtgctaag atgtcaaaaa cccaaacacc tccaaatgta
     7681 gggaagcccc tcctcatcct cgacacaacg accaacgaaa cactcacgtt cccaagcgtt
     7741 actgccgcag gtgctgcttt aggtgtacat ttccaacaaa tcaatcacag gctcaagggt
     7801 cgaacgtcgc ccgacaacct tatttcaaac aggtacaaag tgcttgggta cgataggtaa
     7861 ggttcacaac accctaaatc ctacgaacca agctcgacgg acgttcaaat cccggttaga
     7921 gttaatttat gtaaagattt agtaaagacg tataccattt ttctttacat tgtgcttgcg
     7981 caggatttca ggtaggtctc aaaaaatttg aaaatttcta tattttggtt gtgtaatcca
     8041 tttgcacata acctatggag acaaattatg ggtaagcgaa tgactttcga taccgccaaa
     8101 tcacgctttc aagagaaatt tccacattta gaattgttgg agttcagtgg catttataaa
     8161 ccttccagtg ttagatgtcc tacgcacggg gttgtccaac ttttgtatta cgacacagct
     8221 ataaagtcaa agtatgggtg tccggagtgc gggaaactta aaatgaagga aaatacgcct
     8281 ccccaaaacc aaaaacctgt ctccatcctc gacaccgcca caggcgaaac actcacgttc
     8341 cccagcgtac aagctgccgc caaagcccta aacaccccct acggctctat acgaaccaag
     8401 ctcgacggac gttcaaatcc cgacaacctt gtctgtaaca ggtataaggt tctgctataa
     8461 tcaacctatg gaaaatattg aagaatacgc actgctgtct cccgaagccc tgctggaacg
     8521 cctggatacc gttttgagta tcagaatcgg cggcaagggt tgggaatcca gttatgaccg
     8581 ccaactttgc acagacgctg gtcgaaatac aggacagtct gtacagggtt gtgtcaaccg
     8641 tccaatacgg ggatgacaac ctcaagcggt tgacagcgga caaacggaag cagtatgagt
     8701 tgaacttcaa gatttccgag ggttctacgc gtgtagagtc cgactttaaa gagactttgg
     8761 ttcggttcgg tagagatatg cttcaagata tgccccctaa aatccgttcg gcaacgctgg
     8821 tagcgttgac gaccctgctt gtcggagggg cgttgggtta cggttatttg gaatacctga
     8881 agcaggttgc ttcggaaggg tatcagaccg agcgtctgta taatgccgtc gaccgtcttg
     8941 cagaatccca agaacggata acgtccgcca tcctgaaggg tgctagaggt gccgatttcg
     9001 tgcaaatcgg cagacgttcc tacagtaggg aggatatatc ggaggcaaat agacgtgcag
     9061 agcgtgtccc gtatggcgca gagttggttt cagacggcaa ttttaccgct gttttatctg
     9121 atatagggga ttaacaaaaa tcaggacaag gcgacgaagc cgcagacagt a
//
LOCUS       DAXHPV010000071         9165 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.071, whole genome shotgun sequence.
ACCESSION   DAXHPV010000071 DAXHPV010000000
VERSION     DAXHPV010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9165)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9165)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9165
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.071"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..1939
                     /locus_tag="ACFM6C_001199"
     CDS             <1..1939
                     /locus_tag="ACFM6C_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HFC6158657.1"
                     /translation="ISPEIFGTLFQSVMDAQERREAGAHYTETANIDKVINGLFLENL
                     RAEFEAVKALKRDKDKKLAAFYQKIQNLQFLDPACGCGNFLIVAYDRIRALEDDIIAE
                     ALKDKTGGLFDSPSVQCRLKQFHGIEIDEFAVLIARTAMWLKNHQCNIRTQIRFDGEV
                     ACHTLPLEDAAEIIHANSLRTPWQAADYIFGDPPFIGSTYQTKEQKNDLESICGHIKG
                     YGLLDYVCNWYVKAAGIMAQHPQVQTAFVSTNSICQGQQVEILWGSLLKQDIEIHFAH
                     RTFQWTSQAAGKAAVHCIIVGFRQKPQMPSEKTLYDYPDIKGEPVKHAAANINPYLID
                     APDVIIAKRSRPVHCEPDMVNGSKPTEGGNLILSTDEKEALIAAEPLAEQYIRPFVGA
                     EEFINGKTRWCLWFHGVSDVKRNHDLKQMPQVQARIQAVKTMREASSDKQTQKDAATP
                     WLFQKIRQPSDGNFLIIPRVSSESRRFVPIGYLSYETVVSDLVFTLPNASLYHFGILS
                     STMHNAFMRTVAGRLESRYRYSNTVVYNNFPFPESCRMPSENDRQDPLRAAVETAAQA
                     VLDARGQYRREAREAGLPEPTLAELYAPDAGYTALDKAHAALDKAVDKAYGYKTGKNT
                     DDEAERTAFLFELYRKAAAIA"
     gene            complement(2772..3455)
                     /locus_tag="ACFM6C_001200"
     CDS             complement(2772..3455)
                     /locus_tag="ACFM6C_001200"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HFC6158658.1"
                     /translation="MELVFIRHGQSEWNAKNLFTGWRDVKLSEQGLAEAAAAGKKLKE
                     NGYEFDIAFTSVLTRAIKTCNIVLEESDQLFVPQIKTWRLNERHYGRLQGLDKKQTAE
                     QYGDEQVRIWRRSYDTLPPLLDKDDEFSAHKDRRYAHLPADVVPDGENLQVTLERVLP
                     FWEDQIAPAILSGKRVLVAAHGNSLRALAKHIEGISDEDIMGLEIPTGQPLVYKLDDN
                     LKVIEKFYL"
     gene            3751..6054
                     /gene="parC"
                     /locus_tag="ACFM6C_001201"
     CDS             3751..6054
                     /gene="parC"
                     /locus_tag="ACFM6C_001201"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009340 - DNA topoisomerase IV complex
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HFC6158659.1"
                     /translation="MNMQPHAPHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDG
                     QKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTL
                     RYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEP
                     LHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPA
                     PDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAK
                     ILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSR
                     IDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLDFRTVTVTRRLK
                     FRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKTDLMAAFGLTEIQAEDILEIR
                     LRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRTL
                     VEEAGRAVLTQTTADEPITLILSEKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTV
                     LPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPIAMLTGLPEQHYLLSS
                     SGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATNQNR
                     ALAFPIGELKIMAKGKGLQIIGLNAGESMTHTAVSSEPEILIESEGRRGAAHKDRIPI
                     SLLEAKRGKKGKLLPISGSLKQLSSPK"
     gene            6074..7650
                     /locus_tag="ACFM6C_001202"
                     /pseudo
     CDS             6074..7650
                     /locus_tag="ACFM6C_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237220.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
     gene            7643..8110
                     /locus_tag="ACFM6C_001203"
     CDS             7643..8110
                     /locus_tag="ACFM6C_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009117578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding response regulator"
                     /protein_id="HFC6158660.1"
                     /translation="MTELQHPVLVVDNETDILDLMEMTLMKMGLRVHTASGVAEAKNK
                     LDSQRYSLVLTDMRMPDGSGLEVVQHINSRLLDTPVAVITAFGNADQAQEALRCGAFD
                     PDTMQIQDYLDQIERDIIEQTLKQTEGNRTQAAKRLGISFRSMRYRMERLNIG"
     gene            8214..8966
                     /locus_tag="ACFM6C_001204"
     CDS             8214..8966
                     /locus_tag="ACFM6C_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFC6158661.1"
                     /translation="MTDILIDNTATETVRTLIRAFPLVPVSQPPEQGSYLLTEHDTVS
                     LRLVGEKSSVIVDFASGAAQYRRTKGGGELIAKAVNHTAKPTVWDATAGLGRDSFVLA
                     SLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVQTQG
                     KPDIVYLDPMYPERRKSAAVKKEMTYFHRLVGEAQDEAALLHTARQTAKKRVVVKRPR
                     LGEHLAGQAPAYQYTGKSTRFDVYLPYGTDKG"
BASE COUNT         2278 a         2852 c         2199 g         1836 t
ORIGIN      
        1 catcagtccc gaaatcttcg gcacgctctt ccaatcagtc atggacgcac aagagcggcg
       61 cgaagcgggc gcacactaca ccgaaaccgc caacatcgac aaagtcatca acggcctttt
      121 tttagaaaac ctgcgcgccg aatttgaagc cgtcaaagcc ctcaaacgcg acaaagacaa
      181 aaaactcgcc gccttctacc aaaaaatcca aaacctgcaa ttcctcgacc cggcctgcgg
      241 ctgcggcaac ttccttatcg tcgcctacga ccgtatccgc gccctcgaag acgacatcat
      301 cgccgaagcg ctcaaagaca aaacaggcgg cttattcgac agcccgtccg tccaatgccg
      361 tctgaaacaa tttcacggca tcgaaataga cgaatttgcc gtcctcatcg cccgcaccgc
      421 catgtggctc aaaaaccacc aatgcaacat ccgcacgcaa atccgcttcg acggcgaagt
      481 cgcctgccat acgctgccgc tcgaagacgc cgccgaaatc atccacgcca acagcctccg
      541 cacaccttgg caggcggcgg actacatctt cggcgatccg ccctttatcg gctcgaccta
      601 ccaaaccaaa gagcagaaaa acgacctcga aagcatctgc ggccatatca aaggctacgg
      661 cctgttggat tacgtctgca actggtatgt caaagccgcc ggtatcatgg cgcagcatcc
      721 ccaagttcag acggcatttg tttccaccaa ttccatctgc caaggccagc aggtcgaaat
      781 cctttggggc agccttttga agcaagacat cgaaatccac tttgcccacc gcacctttca
      841 atggacgagc caagccgcag gcaaagccgc cgtccactgc atcatcgtcg gcttccgcca
      901 aaagccgcaa atgccgtctg aaaaaaccct ctacgactat cccgacatca aaggcgaacc
      961 cgtaaaacac gccgcggcca acatcaatcc gtatctgatt gacgcgcccg atgtgattat
     1021 tgccaagcgc agccgtcccg tacattgcga acctgacatg gtcaacggaa gcaaaccgac
     1081 cgaaggcggc aaccttatcc tttcaaccga tgaaaaagaa gccctgattg ccgccgaacc
     1141 cttggcggaa caatacatcc gtccctttgt cggcgcagag gaatttatca acggcaaaac
     1201 ccgttggtgc ctgtggtttc acggcgtatc cgacgttaaa cgcaaccacg acctgaaaca
     1261 gatgccccaa gttcaagccc gtattcaggc agtcaaaacc atgcgcgaag ccagcagcga
     1321 caaacaaact caaaaagatg cagcaacccc gtggcttttt caaaaaatcc gccagccttc
     1381 agacggcaat tttctgatta tcccacgcgt ctcatccgaa agccgccgtt tcgtccccat
     1441 cggttatcta tcatatgaaa cagttgtcag cgatttggta tttacccttc caaacgccag
     1501 cctctaccac ttcggcatcc tcagctccac catgcacaac gcctttatgc gtaccgttgc
     1561 cggccgtctg gaaagtcgtt accgctattc caataccgtt gtgtacaaca acttcccctt
     1621 ccccgaaagc tgccggatgc cgtctgaaaa cgaccgccaa gacccgctcc gcgccgccgt
     1681 cgaaaccgcc gcccaagccg tcctcgacgc gcgcggacaa taccgccgag aagcgcggga
     1741 agccggtttg cccgagccga ccctcgccga actctatgcg cccgacgcag gctataccgc
     1801 cctagacaaa gcccacgccg ccctcgacaa ggcagtcgat aaagcctacg gctacaaaac
     1861 aggcaaaaac accgacgacg aagccgaacg caccgccttc ctgttcgagc tgtaccgcaa
     1921 ggcggcggca attgcgtagt agttgcgtag tagttgcgta gtagttgcgt aggatagttg
     1981 cgtagggtgg gcttcagccc accaactccc accaactccc accaactccc accaactccc
     2041 accatcttca ccctaaaacc ccgtcatctc cgcaaaagca attgcgtagg gtgggcttca
     2101 gcccaccgtt tttcttcatt ttcggttgtt gattggcagg ctgaagccca ccctgcggtt
     2161 acaaaaatcc cgtcattccc gcgcaggcgg gaatccagac ctttcggggc ggaaacttat
     2221 cggataaaac gatttcccct gcatcctgga ttcccacttt catgggaatg acgggatata
     2281 ggtttcccta cggacgtgtt cagattcccg ccttcgcggg aatgacggcg gagaagtttc
     2341 tgtctttccg ataacttacc gtaacttaaa atcccgtcat taccgcaaaa gcagttgcta
     2401 cggttacaaa aatcccgtca tccccacgaa agcgaaaatc ctgcctgtcg gatttcggtt
     2461 ttttcgggcg tttcgggaac ttataaatcg tcattcccgc gcaggcggga atccagaacg
     2521 cgggacggcg gcaatattca aaggttgtct gaaaattcag aggttctaga ttcccgcctg
     2581 cgcgggaatg acggcggagc ggtttctgct tttccgataa atgaccgcaa cctaaaaccc
     2641 atccttccca cgaaaacaga aaaacaaaaa cctaaaatcc cgtcgttctc gcgaaagcag
     2701 ttgctacgtt taccgtcaaa aatgccgtct gaacgctcaa gccttcagac ggcatttttt
     2761 atttcacacc cttacaggta gaatttttcg atgactttca aattgtcgtc caatttgtac
     2821 accaacggct gaccggtcgg gatttccaag cccataatgt cttcgtcgga aatgccctcg
     2881 atgtgttttg ccagcgcgcg cagggagttg ccgtgcgccg ccaccaagac gcgtttgccg
     2941 ctcaaaatcg cgggggcgat ttggtcttcc caaaacggca atacgcgctc cagcgttact
     3001 tgcaggtttt cgccgtcggg tacgacatcg gcaggcagat gggcatagcg gcggtctttg
     3061 tgtgcggaaa actcatcgtc tttgtccaaa agcggcggca gggtgtcgta gctgcgccgc
     3121 cagatgcgga cttgctcgtc gccgtattgt tcggcggttt gttttttgtc caggccttgc
     3181 agtcggccgt agtggcgttc gttcagccgc catgttttga tttgcggtac gaacagttgg
     3241 tcggattctt ccaaaacgat gttgcaggtc ttaatcgcgc gggtcaggac ggatgtgaag
     3301 gcgatgtcga actcatagcc gttttctttc agttttttac cggcggcagc agcctcggca
     3361 agcccctgct cgctcagctt cacgtcgcgc cagcctgtaa acaggttttt cgcgttccat
     3421 tcgctttgtc cgtggcggat aaataccaat tccatatcgt ctccaatgtg tgaaagtggg
     3481 aaagccttat ttataacata ttttcacatt cccgtatttg attcagattc agacacgcgc
     3541 ccactatggt ttgccgtttt gatttacaat aatgcccttt gctttacatt ccgcatacac
     3601 aatgtttcaa cacacaggac gacacataaa gcaccgccct atgtgttgcc ctgatttgga
     3661 aggggttgcc ccctcccaaa taaagtctga ttctaccgcc ccgaaggaca gatgtccaag
     3721 tggcgggggt tcaaccgaaa aggaaatacg ataaatatgc aaccgcacgc tccacatacc
     3781 gattccaata cgctgatgct cggccgatac gccgaacgcg cctatctcga atacgccatg
     3841 agcgtggtca aaggccgcgc gctgcctgaa gtttcagacg gccaaaagcc cgttcagcgg
     3901 cgcattttgt ttgccatgcg cgatatgggt ttgacggcgg gggcgaagcc ggtgaaatcg
     3961 gcgcgcgtgg tcggcgagat tttgggtaaa taccacccgc acggcgacag ttccgcctat
     4021 gaggcgatgg tgcggatggc gcaggatttt accttgcgct atcccttaat cgacggcatc
     4081 ggcaacttcg gttcgcgcga cggcgacggt gcggcggcga tgcgttacac cgaagctcgg
     4141 ctgacgccga ttgcggaatt gctgttgtcc gaaatcaatc agggaacggt ggatttcgtg
     4201 ccgaactacg acggcgcgtt tgacgagccg ctgcacctgc ccgcccgcct gcctatggtg
     4261 ttgctcaacg gcgcgtcagg catcgcggtg ggcatggcga ccgagattcc gtcgcacaat
     4321 ttgaacgaag tgacgcaggc agcgattgcg ctgttgaaga agccgacgct ggaaaccgcc
     4381 gacctgatgc aatatattcc tgcgcccgat tttgccggcg gcggtcaaat catcacgccg
     4441 gcggacgaat tgcgccggat ttacgaaacc ggcaaaggca gcgtgcgcgt gcgtgcgcgt
     4501 tatgaaatcg agaagctggc gcgcggacag tggcgcgtca tcgtaaccga gctgccgccg
     4561 aacgccaatt ccgccaaaat ccttgccgaa atcgaagaac aaaccaaccc gaaaccgaaa
     4621 gcgggtaaga aacagctcaa ccaagaccag ctcaacacca aaaagctgat gctggattta
     4681 atcgaccgcg tgcgcgacga gtccgacggc gaacatcccg tgcgtctggt gttcgaaccg
     4741 aaatccagcc gcatcgatac cgataccttc atcaacacgc tgatggcgca aacttcgctg
     4801 gaaggcaatg tgtccatgaa cttggtgatg atggggctgg acaaccgccc cgcgcagaaa
     4861 aacctgaaaa cgattttgca ggaatggctg gatttccgca ccgtaaccgt aacacgccgt
     4921 ctgaaattcc gtttgaacca agtggaaaaa cggctgcaca tcctcgaagg ccgtctgaaa
     4981 gtctttctgc acatcgacga agtgattaaa gtcatccgcg aatcagatga cccgaaaacc
     5041 gatttgatgg cggcgttcgg gctgaccgaa atccaagccg aagacatttt ggaaatccgc
     5101 ctgcgtcagt tggcgcgttt ggaaggtttc aaactcgaaa aagaattgaa cgaattgcgc
     5161 gaagaacaag gccgtctgaa catccttttg ggcgacgaaa acgaaaaacg caagctgatt
     5221 atcaaagaaa tgcaggcgga catgaaacag ttcggcgacg cgcgccgcac gctggtggaa
     5281 gaagccggac gcgccgtgct gacacaaacc accgccgacg aacccatcac actgattctg
     5341 tctgaaaaag gttggatacg cagccgcgcc ggacacaatc tcgatttgag ccaaaccgcg
     5401 ttcaaagaag gcgaccgcct caaacaaacc ctcgaaggca gaacggtttt acccgtcgtc
     5461 attttggatt catcgggcag aacctacacc cttgatgccg ccgaaatccc cggcgggcgc
     5521 ggcgacggcg tgccggtttc atccttgatc gagctgcaaa acggtgcgaa acccattgcg
     5581 atgttgacag gattgccgga acaacattat ttattatcaa gcagcggcgg ctacggcttc
     5641 atcgccaaac tgggcgatat ggtcgggcgc gtgaaagcgg gcaaagtggt gatgaccgca
     5701 gacagcggcg aaaccgtttt gccgccggtt gccgtctatg cctcctcgtt catcaacccc
     5761 gactgcaaaa tcattgccgc caccaatcaa aaccgcgccc tcgccttccc catcggcgaa
     5821 ttgaaaatta tggcgaaagg caaagggctg caaatcatcg gattaaacgc cggcgaatcg
     5881 atgacgcata ccgccgtttc ttccgagccg gaaatcctga ttgaaagcga aggcaggcgc
     5941 ggcgcagcgc acaaagaccg catccccatc tccctgcttg aggcaaaacg cggcaaaaaa
     6001 ggcaaactat tacccatatc gggcagcctg aaacagcttt cttccccgaa ataaacccga
     6061 ctctgcacat actatggtaa tttccaatac ccgcgaactt gagaaactca aagaccggat
     6121 tcccaatctg atcaacatcg cccgcatcgc catcgtcttc cccctgctga ttatgcatat
     6181 cttcgggttg gaggtcagcg gacatgaaaa cctgcacgct tcgtggacgg cgtgggcatt
     6241 ttatgtttgg ctcgccattt cctgctggct gattttcttt tccatcatcc atccgcattg
     6301 gcaatggcag tcgctgaaaa tgccgcgttt cagcgcggtg gcggacatca cgatgatcgg
     6361 cgtgctgacc tacctgttcg gcggcatcga ttccggcttc ggcatcctga ttctgccctt
     6421 cgtcgtctgc tcctgcctgc tcagctacgg gcgttacccc ctgctctatg ccagctacgc
     6481 cgccatcctg ctgatattga atgcccttgc agacagcaat atcaatatgt atccgctgat
     6541 tctggatgca aaaaccgtca ccaacacctt cgtcctcgtg gctggttcct atttcgtcgc
     6601 catgattgcc tcactgtcgg tcagatacat cgaccgtgcc ggaaaactcg cctacgacag
     6661 ccatatcgcc taccggcgca tcaaaggctt gagccaaacc gtactcaacc gcgttcagga
     6721 agcggtcgtc gtcatcaacg tcgagcatca gaccatactg ttcaataaaa aggcaaaaga
     6781 cctgctaccc atgcttgaaa tcggacagca tactgccctg ttcgacccta ttaccgtttt
     6841 atgggacaag gcctcttcgc gtactttcga acgcaatatc gacacgcccg gcctgaacgc
     6901 cggcatccgc gccgttccgg tcaacaaagg gccggacaag ctgctcatcc tctacatccg
     6961 cccgcaaagc gaaattcagg cagaagccct gtccgtcaaa cttgccgcgc tcggacaact
     7021 gaccgccaac ctcgcccacg aaatccgcaa cccgatgtcc gccatccgcc acgccaacga
     7081 cctgctgcgc gaaaatatgg aagcgggggc ggcagatccg ttcaacgcca aattgtgcaa
     7141 aatcatcgac ggcaacgtct gccgtatcga caaaatgctc gaagacattt cctcgctcaa
     7201 caagcgcaac aaaaccgaac gcgaaaccat cagcctgata ccgttttggg aagaattcaa
     7261 acaagagttc ctgctcggcc atcccgatgc cgccggctgc atccgtccga acattcaggg
     7321 cggcagcctg accgcctatt tcgatcccgc ccacctgcga caaattatgt ggaacctcgc
     7381 caacaacgcg tggcgacaca gccgcaaaca gcccggctca atttccgtca ccatccgccc
     7441 cgcgcaaaaa aacaccgtct gcatcctctt tgccgaccgc ccgaagtgca ggaacacctg
     7501 ttcgaaccct tttacaccac ggcggaaaac ggcaccggcc tcgggctgta tgtcgcccgc
     7561 gaactggcgc acgccaattt cggcgatttg acctacctgc ccgaagccaa atgtttcgaa
     7621 ctcgcattac cggaaaaaac caatgactga actgcaacac cccgtcctcg tcgtcgataa
     7681 cgaaaccgac attctcgacc tgatggaaat gaccctgatg aaaatgggct tgcgcgtcca
     7741 taccgcgtca ggcgttgccg aagccaaaaa caagctcgac agccaacgct attcgctcgt
     7801 cctgaccgat atgcgtatgc cggacggctc ggggctggaa gtcgtccaac acatcaacag
     7861 ccgcctgctc gatacgccgg ttgccgtcat caccgccttc ggcaacgccg atcaggcaca
     7921 ggaagcgttg cgttgcggcg cgttcgaccc cgataccatg cagatacagg actatctcga
     7981 ccaaatcgaa cgcgacatta tcgaacaaac cctcaaacaa accgaaggca accgcacgca
     8041 ggccgccaaa cgcttgggca tcagcttccg ttccatgcgc taccgtatgg aacgcctcaa
     8101 catcggctga cgacaaaacg gcatccgcac catctccgcc cacccgaaaa aatgccgtct
     8161 gaaacggcac gggaaagcgg gttcgcccca cgcccgaacg gacacaaaac accatgaccg
     8221 acatccttat tgacaacacc gccaccgaaa ccgtccgcac cctgatacgg gcattccccc
     8281 ttgtgcccgt ttcccaaccg cccgaacaag gcagctacct ccttaccgaa cacgataccg
     8341 tcagcctcag gcttgtcggg gaaaaaagca gcgtcatcgt cgactttgcc tcgggagccg
     8401 cacaataccg gcgcacaaaa ggcggaggag aactcatcgc caaagccgtc aaccataccg
     8461 ccaaacccac cgtatgggat gcaaccgcag gattggggcg cgacagcttc gtcctcgcct
     8521 cgctcggact gaccgttacc gccttcgagc agcatcccgc cgtcgcctgc ctgctttcag
     8581 acggcatccg ccgcgccctc ctcaatcccg aaacgcaaga caccgccgcg cgcatcaacc
     8641 tccatttcgg caacgccgcc gaacagatgc ccgcccttgt tcaaacacaa ggcaaacccg
     8701 acatcgtcta tctcgacccc atgtatcccg aacgccgcaa aagtgccgcc gttaaaaaag
     8761 aaatgaccta cttccatcgg ctcgtcggcg aagcgcaaga tgaagcggca ctcctgcata
     8821 ccgcacgcca aacagcaaaa aaacgcgtcg tcgtcaaacg cccccgcctc ggcgaacacc
     8881 ttgccggaca agcccctgcc taccaataca ccggcaaaag cacccgcttc gacgtttacc
     8941 tgccctacgg gacggacaag ggataacgcc cataaaacaa gacaccgaaa aatttgccgt
     9001 tcttatgcaa acgagaaacc ggtttttgcg tttcgactgt tttggataaa tcatcacacc
     9061 ttaaagtttg tcattcccac ggaagtggga atccgattca ttcagtttta tagtggttta
     9121 aatttaaacc actatagctg ttttcgagtt tcaggcaact tccaa
//
LOCUS       DAXHPV010000072         9072 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.072, whole genome shotgun sequence.
ACCESSION   DAXHPV010000072 DAXHPV010000000
VERSION     DAXHPV010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9072)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9072)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9072
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.072"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(129..464)
                     /locus_tag="ACFM6C_001205"
     CDS             complement(129..464)
                     /locus_tag="ACFM6C_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003699221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HFC6158662.1"
                     /translation="MFKDWKEHTALVKKSFGELGKAHPKMLQAYGALEQAAAAEALDA
                     KTRELIAIAVAITTRCESCISVHAAAAAKAGATDSEIAGALATAIALNAGAAYTYALR
                     ALEAVETQK"
     gene            593..1498
                     /gene="mtrA"
                     /locus_tag="ACFM6C_001206"
     CDS             593..1498
                     /gene="mtrA"
                     /locus_tag="ACFM6C_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter MtrCDE transcriptional
                     activator MtrA"
                     /protein_id="HFC6158663.1"
                     /translation="MDILDKLVDFAQLTGSVDVQCLLGGQWSVRHETLQREGLVHIVT
                     SGSGYLCIDGETSPRPVSTGDIVFFPRGLGHVLSHDGKCGESLQPDMRQHGAFTVKQC
                     GNGQDMSLFCARFRYDTHADLMNGLPETVFLNIAHPSLQYVVSMLQLESKKPLTGTVS
                     VVNALSSVLLVLILRAYLEQDKDVELSGVLKGWQDKRLGHLIQKVIDKPEDEWNVDKM
                     VAAANMSRAQLMRRFKSRVGLSPHAFVNHIRLQKGALLLKKNPDSVLSVALSVGFQSE
                     THFGKAFKRQYHVSPGQYRKEGGQK"
     gene            complement(1560..2048)
                     /locus_tag="ACFM6C_001207"
     CDS             complement(1560..2048)
                     /locus_tag="ACFM6C_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HFC6158664.1"
                     /translation="MKKYLIPLSIAAVLSGCQSIYVPTLTEIPVNPINTVKTEAPAKG
                     FRLASSHWTDVAKISDEATRLGYQVGIGKMTKVQAAQYLNNFRKRLVGRNAVDDSMYE
                     IYLRSAIDSQRGAINTEQSKLYIQNALRGWQQRWKNMDVKPNNPAFTNFLMEVMKMQP
                     LK"
     gene            2195..3097
                     /locus_tag="ACFM6C_001208"
     CDS             2195..3097
                     /locus_tag="ACFM6C_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HFC6158665.1"
                     /translation="MDTAKKDILGSGWMLVAAVCFTIMNVLIKEASAKFALGSGELVF
                     WRMLFSTVALGAAAVLRRDTFRTPHWKNHLNRSMVGTGAMLLLFYAVTHLPLATGVTL
                     SYTSSIFLAVFSFLILKERISVYTQAVLLLGFAGVVLLLNPSFRSGQETAALAGLAGG
                     AMSGWAYLKVRELSLAGEPGWRVVFYLSVTGVAMSSVWATLTGWHTLSLSSAVYLSGI
                     GVSALIAQLSMTRAYKVGDKFTVASLSYMTVVFSALSAAFFLGEELFWQEILGMCIII
                     LSGILSSIRPTAFKQRLQSLFRQR"
     gene            complement(3138..4268)
                     /locus_tag="ACFM6C_001209"
     CDS             complement(3138..4268)
                     /locus_tag="ACFM6C_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0019808 - polyamine binding [Evidence
                     IEA];
                     GO_process: GO:0015846 - polyamine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6158666.1"
                     /translation="MTKHLPLAVLTALLLAACGGSDKPSAENPAPAENQNVLKIYNWS
                     EYVDPETVADFEKKNGIKVTYDVYDSDETLESKVLTGKSGYDIVAPSNAFVGRQIKAG
                     AYQKIDKSLIPNYKHLNPEMMRLMDGVDPGHEYAVPFYWGTNTFAINTERVKKALGTD
                     KLPDNQWDLVFDPEYTSKLKQCGISYLDSAAEIYPMVLNYLGKNPNSSNTEDIREATA
                     LLKKNRPNIKRFTSSGFIDDLARGDTCVTIGFGGDLNIAKRRAEEAGGKEKIRVMMPK
                     EGVGIWVDSFVIPKDAKNVANAHKYINDFLDPEVSAKNGNFVTYAPSSKPARELMEDE
                     FKNDNTIFPTEEDLKNSFIMVPIQPAALKFMVRQWQDVKAGK"
     gene            4473..7097
                     /gene="alaS"
                     /locus_tag="ACFM6C_001210"
     CDS             4473..7097
                     /gene="alaS"
                     /locus_tag="ACFM6C_001210"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HFC6158667.1"
                     /translation="MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQ
                     FKDVFLGFDKRPYSRATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFK
                     RDAIHFAWEFLTSPEWLNIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKG
                     AKYASDNFWQMGDTGPCGPCSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFN
                     RDEQGNMNPLPKPSVDTGMGLERMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSME
                     EPSLKVIADHIRSCSFLIADGVLPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLV
                     ADLVKEMGGAYPELKEKQAQIEEALKNEESRFAQTLETGMALLENALAKGGKTLDGEI
                     IFKLYDTYGFPYDLTADICRERNIELDEAGFEREMEAQRARARAAQSFKANAQLPYDG
                     QDTEFKGYSERQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY
                     IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTTKVDDEIRNANMRNHSATH
                     LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAV
                     NAAIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGGFSTELCGGTHVSRTGDIGLFKIIS
                     EGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA
                     LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNA
                     VILLAAVNDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQVGGKGGGRPDLAQAGGTDAG
                     KLPEMLVSVESWLCQKLS"
     gene            7159..7890
                     /locus_tag="ACFM6C_001211"
     CDS             7159..7890
                     /locus_tag="ACFM6C_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158668.1"
                     /translation="MNTKTELQKLLEEDISTLTETLICADALPPRYVRSIATPIVRRW
                     LIDKQLNILAKEIGLTIELPILDTSLVFEKLSTLENKVNFYMAGGVYLGGEFISSIYH
                     SSQEFSGEPIIYAEPNIILCPAEKFLTLKRVFHNGNIFNMNQIITFLSNKQGGVHFDK
                     NYDKYKTWQVAIEKAANFLKLGNPYNEDKLSLSEEHDTILVVLPLEKGYEWNCLEIEV
                     LSAAQSLANIYCNKVRLIDGHVWKE"
     gene            8197..>9072
                     /locus_tag="ACFM6C_001212"
     CDS             8197..>9072
                     /locus_tag="ACFM6C_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IIL restriction-modification enzyme MmeI"
                     /protein_id="HFC6158669.1"
                     /translation="MKTLLQLQTAAQNFAAYYKDQTDERREKDTFWNEFFAIFGIDRK
                     NVAHFEYPVKDPADNTQFVDIFWEGIFLAEHKSANKNLTKAKEQAERYLQEIGRTKPS
                     ALPEYYAVSDFAHFHLYRRVPEEGVENQWQFPLEALPEYITRGVFDFMFGIEAKVRQI
                     QEEADIQAAAAIGRLHDALKEEGIYEEHELRLFITRLLFLFFADDSAVFQRNYLFQDF
                     LESCKETDTLGDKLNQLFEFLNTPDQKRSKTQSEKFKGFEYVNGGLFKERLRTFDFTA
                     KQHRALIDCGNFDWRN"
BASE COUNT         2304 a         2397 c         2189 g         2182 t
ORIGIN      
        1 cttacccctt gtttctcaaa tgccgtctga aaaaaacggc tgtatatgtt gtctgcaaaa
       61 tatcgggaag cataacagac aaaatgccgt ctgaaatatt ttcagacggc atttcaatcc
      121 gattcggatt atttttgcgt ttcaaccgct tccaatgcac gcagggcgta agtgtaagcg
      181 gcaccggcat tcagggcgat ggcggttgcc aatgcgccgg cgatttcgct gtcggtcgca
      241 ccggctttgg cggcggcggc ggcgtgaaca ctgatgcagc tctcacaacg tgtggtaatg
      301 gcaacggcga tggcaatcag ttcgcgcgtt ttggcatcaa gtgcttcggc ggcggcggcc
      361 tgttccaatg cgccgtaggc ctgcagcatt ttaggatgcg ccttacccag ctcgccgaac
      421 gattttttaa ccaatgcggt atgttctttc caatctttaa acattttctt ttcctttctc
      481 ttgcgtttaa ccctgatacg cgcttgcgta tctgttttcg atgtgcgtat tattgcaatt
      541 attcagttgt gtttctcgtt taatcatctc attttatggt tcaaaaagat ttatggacat
      601 tctggacaaa ctggtcgatt tcgcccaatt gacgggcagt gtggatgtgc agtgcctttt
      661 gggcggacaa tggtcggtac ggcatgaaac cttgcaacgc gaaggattgg tacacattgt
      721 tacatcgggc agcggctatc tctgcatcga cggcgaaact tccccgcgtc cggtcagtac
      781 aggggatatt gtatttttcc cgcgcggctt gggtcatgtg ttgagccacg acggaaaatg
      841 cggagaaagt ttacaaccgg atatgcggca gcacggtgcg tttacggtca agcagtgcgg
      901 caacggacag gatatgagcc tgttttgcgc ccgtttccgc tacgacaccc acgccgattt
      961 gatgaacggg ctgcctgaaa ccgtttttct gaacattgcc catccgagtt tacagtatgt
     1021 ggtttcaatg ctgcaactgg aaagcaaaaa acctttgacg gggacggttt ccgtggtcaa
     1081 cgcattgtcg tccgtcctgc tggtgcttat cctgcgcgcc tatctcgaac aggataagga
     1141 tgtcgaactc tcgggcgtat tgaaaggttg gcaggacaaa cgtttgggac atttaatcca
     1201 aaaggtgata gacaaaccgg aagacgaatg gaatgtcgac aaaatggtgg cggctgccaa
     1261 tatgtcgcgc gcgcaactga tgcgccgttt caaaagccgg gtcggactca gcccgcacgc
     1321 ctttgtgaac catatccgcc tgcaaaaagg cgcgttgctg ctgaaaaaaa acccggattc
     1381 ggttttgtcg gtcgcactgt cggtaggctt tcagtcggaa acgcacttcg gcaaggcgtt
     1441 caaacggcaa tatcacgttt cgccgggtca ataccggaaa gaaggcgggc aaaaataaat
     1501 cggggcttca aacgcaaatg ccgtctgaaa aggctttcat acagcatttg cgtaccgcgt
     1561 catttcaagg gctgcatctt catcacttcc atcaaaaagt tggtaaatgc ggggttgttg
     1621 ggtttgacat ccatattttt ccaacgctgc tgccagccgc gcaaggcatt ctggatatac
     1681 agcttggact gttccgtatt gattgcgccc cgctggctgt ctatcgccga acgcaggtag
     1741 atttcataca tactgtcatc gacggcattg cgtccgacca ggcgttttct gaagttgttc
     1801 agatattgcg ccgcctgaac cttggtcatt ttaccgatac ccacctgata gcccaagcgc
     1861 gtcgcttcat cgctgatttt ggcaacatcc gtccaatgcg aagaggcaag gcggaaacct
     1921 tttgcaggtg cttccgtttt gacggtattg ataggattca cggggatttc cgtcaatgtg
     1981 ggcacataaa tagactggca gccggaaaga actgccgcaa tggaaagagg gataaggtat
     2041 tttttcatgc ccccattata atcaagtttg ccttgagaaa acaaattgtt cggcaagaaa
     2101 aataaaattt cggcatcaga agcaggcaaa aacacattcc acaagccttg ccgcaaggtt
     2161 tacaatccga ccgtccttat cgcaacgacc gtttatggat accgcaaaaa aagacatttt
     2221 aggatcgggc tggatgctgg tggcggcggt ctgcttcacc attatgaacg tattgattaa
     2281 agaggcatcg gcaaaatttg ccctcggcag cggcgaattg gtcttttggc gcatgctgtt
     2341 ttcaaccgtt gcgctcgggg ctgccgccgt attgcgtcgg gacaccttcc gcacgcccca
     2401 ttggaaaaac cacttaaacc gcagtatggt cgggacgggg gcgatgctgc tgctgttcta
     2461 cgcggtaacg catctgcctt tggccaccgg cgttaccctg agttacacct cgtcgatttt
     2521 tttggcggta ttttccttcc tgattttgaa agaacggatt tccgtttaca cgcaggcggt
     2581 gctgctcctt ggttttgccg gcgtggtatt gctgcttaat ccctcgttcc gcagcggtca
     2641 ggaaacggcg gcactcgccg ggctggcggg cggcgcgatg tccggctggg cgtatttgaa
     2701 agtgcgcgaa ctgtctttgg cgggcgaacc cggctggcgc gtcgtgtttt acctttccgt
     2761 gacaggtgtg gcgatgtcgt cggtttgggc gacgctgacc ggctggcaca ccctgtccct
     2821 ctcatcggcg gtttatctgt cgggcatcgg cgtatccgcg ctgattgccc aactgtcgat
     2881 gacgcgcgcc tacaaagtcg gcgacaaatt cacggttgcc tcgctttcct atatgaccgt
     2941 cgttttttcc gccctgtctg ccgcattttt tctgggcgaa gagcttttct ggcaggaaat
     3001 actcggtatg tgcatcatca tcctcagcgg tattttgagc agcatccgcc ccactgcctt
     3061 caaacagcgg ctgcaatccc tgttccgcca aagataaaaa atgccgtccg aacatccttc
     3121 agacggcata tcgggcttta tttccccgcc ttcacatcct gccactggcg caccataaac
     3181 ttcaatgccg ccggctggat aggcaccatg ataaagctgt ttttcaaatc ctcctcggtt
     3241 gggaaaatcg tattgtcgtt tttaaattcg tcttccatca gctcacgcgc cggcttgctc
     3301 gaaggcgcat aagtaacgaa attgccgttt ttcgccgaca cttccggatc gaggaagtcg
     3361 ttgatgtatt tgtgcgcgtt ggcgacgttt ttcgcatctt tcggaatcac gaaagaatcc
     3421 acccaaatcc ccacgccctc tttgggcatc atcacgcgga ttttttcctt gccgcccgct
     3481 tcttcggcac ggcgtttggc gatgttcaaa tcgccgccga aaccgattgt tacgcaggta
     3541 tcgccgcgcg ccaaatcatc gataaagccg gacgaagtaa agcgtttgat attggggcgg
     3601 tttttcttga gtagggcggt tgcctccctg atgtcttccg tattgctgct gttcgggttt
     3661 ttacccaaat agttcaacac cataggatag atttccgccg cgctgtccaa atagctgatg
     3721 ccgcattgct tgagtttgga cgtgtattcg gggtcgaaca ccaaatccca ctggttgtcc
     3781 ggcagcttgt ccgtacccaa agcctttttc acgcgttcgg tattgatggc gaaggtattt
     3841 gtcccccaat aaaacggcac ggcgtattcg tggccgggat cgaccccgtc catcagcctc
     3901 atcatttcgg ggttgaggtg tttataattg ggaatcagcg acttatcgat tttctgatac
     3961 gcacctgcct taatctgcct gcccacaaac gcattggacg gcgcgacaat gtcgtaaccg
     4021 gacttgcctg tcagcacctt gctttccagc gtttcatcgc tgtcgtacac atcataagta
     4081 accttgatgc cgtttttctt ttcaaaatcg gcaacggttt ccggatcgac atattccgac
     4141 cagttgtaaa ttttcaatac gttttggttt tccgccggtg ccggattttc ggcagatggt
     4201 ttgtccgaac cgccgcacgc tgcaagcagc aaagcagtca ggacggccag gggcagatgt
     4261 ttggtcatta tcattccttg catatcgggt tggagaaagc ggccattata gccgatattg
     4321 gcaacagggc ttcagacggc attcaaaatc ccgccacact cttccgaaaa ccgccgcttc
     4381 catagctaga aacagggatt tgcggtaaga taccgccgtt cgttttccct gcttttacca
     4441 tgacaagaca tttgagagac attgaaaaaa ttatgaaaac ctccgaactg cgccaaaaat
     4501 tcctaaaatt ttttgaaacc aaaggccaca ccgtcgtccg ctcttccagc ctcgtgccgc
     4561 acgacgaccc gaccctgctg tttaccaacg cgggcatgaa ccaatttaaa gacgtattct
     4621 taggtttcga caaacgcccg tacagccgcg ccaccaccgc gcaaaaatgc gtacgcgccg
     4681 gcggcaaaca caacgacttg gaaaacgtcg gctacaccgc ccgccaccac accttctttg
     4741 aaatgatggg caacttctcc ttcggcgact acttcaaacg cgacgccatc cacttcgctt
     4801 gggaatttct gacttccccc gaatggctca acatccctaa agacaaactg ttggcgaccg
     4861 tttacgcgga agacgacgaa gcctacaaca tctggttgaa cgaaatcggt atgccgtccg
     4921 agcgcatcgt ccgcatcggc gacaacaaag gcgcgaaata cgcgtccgac aacttctggc
     4981 aaatgggcga caccggccct tgcggcccct gctccgaaat tttctacgac cacggcgaag
     5041 aaatctgggg cggcattccc ggcagccccg aagaagacgg cgaccgctgg atcgaaattt
     5101 ggaactgcgt atttatgcag ttcaaccgcg acgaacaagg caatatgaat ccgctgccca
     5161 agccgtccgt cgataccggc atgggcttgg aacgcatggc cgccgtcatg cagcatgttc
     5221 acagcaacta cgaaatcgac ttgttccaag acctgctcaa agccgttgcc cgcgaaaccg
     5281 gcgcgccgtt cagtatggaa gaacccagcc tgaaagtcat cgccgaccac atccgctcct
     5341 gctcattcct gattgcagac ggcgtcttgc cttccaacga aggccgcggc tacgtattgc
     5401 gccgcattat ccgccgcgcc gtgcgccacg gttacaaact gggtcaaagc aaaccgttct
     5461 tccacaaact ggtggccgat ttggtcaaag agatgggcgg tgcctaccct gagttgaaag
     5521 agaaacaagc acaaatcgaa gaagcgttga aaaacgaaga aagccgtttt gcccaaacgc
     5581 tggaaactgg tatggctttg ttggaaaacg cgctggccaa aggcggcaaa acactcgacg
     5641 gcgaaatcat cttcaaactc tacgacacct acggtttccc atacgatttg accgccgaca
     5701 tctgccgcga acgcaatatc gaactggacg aagcaggctt cgagcgcgaa atggaagccc
     5761 aacgcgcacg cgcacgcgcc gcccaaagct tcaaagccaa cgcccaactg ccttatgacg
     5821 gtcaagacac cgagtttaaa ggttatagcg aacgccaaac cgaatccaaa gtcctcgccc
     5881 tctacaaaga cggcgagcaa gtcgacgaat tgaacgaagg cgacagcggc gcagtcgtca
     5941 tcgactttac cccgttctat gcagaatccg gcggccaagt cggcgacgtc ggctatatct
     6001 tctcaggcga aaaccgcttt gaagtacgcg atacccaaaa aatcaaagcg gccgtattcg
     6061 gccaattcgg tgtacaaacc tcaggccgtc tgaaagtcgg cgacagcgtt accaccaaag
     6121 tagatgacga aatccgcaat gccaatatgc gcaaccacag cgcgacccac ctgatgcaca
     6181 aagccctgcg cgatgtattg ggcagacacg tcgaacaaaa aggctctttg gttaccgccg
     6241 aatccacccg tttcgacatt tcccatcccc aagcggtaac tgccgaagaa atcgccgaag
     6301 tcgaacgccg cgtcaacgaa gccgttttgg cgaacgttgc cgtcaacgcc gccattatga
     6361 gcatggaaga cgcgcaaaaa accggcgcca tgatgctctt cggcgaaaaa tatggcgacg
     6421 aagtacgcgt attgcaaatg ggcggtttct ctaccgaatt gtgcggcggc acgcacgttt
     6481 cacgcaccgg cgacatcggc ctcttcaaaa tcatcagcga aggcggtatt gccgcaggcg
     6541 tgcgccgtat cgaagccatc accggcctga acgcactcaa atgggcgcaa gagcaagagc
     6601 gtttggtgaa agacatcatt gctgaaacca aagcccaaac cgaaaaagac gtactggcga
     6661 aaatccaagc aggcgcggca cacgccaaag ccttggaaaa agaattggca cgcgccaaag
     6721 ccgaactcgc cgtccacgca ggcgcaaaac tcttggacga cgcaaaagac ttgggcgcag
     6781 ccaaactcgt tgctgcccaa atcgaagccg acgcagccgc cctgcgcgaa atcgttaccg
     6841 atttaaccgg taaatccgac aacgccgtga ttcttttagc ggcagtaaac gacggcaaag
     6901 tctccctgtg cgccggcgta tccaaaccgt tgaccggcaa agtgaaagca ggcgatctgg
     6961 ttaaatttgc agccgaacaa gtcggcggca aaggcggcgg ccgtcccgac ttggcgcagg
     7021 ccggcggcac ggatgccggc aaattgcccg aaatgctggt aagcgtggaa agctggcttt
     7081 gtcagaaatt aagttaaatt taaatcttaa taagccattt gagtcttgtt caaatggctt
     7141 atattttgga ttgttagaat gaatactaaa acagagttac aaaaactttt agaagaggat
     7201 atatcaactt taacagaaac actaatttgt gcagatgctc ttcctccaag atatgtacgt
     7261 agcattgcaa ctcctattgt ccgtcgatgg ttaattgaca aacaattaaa tattctcgca
     7321 aaagaaatag gtttaactat agaattgccc atccttgata caagtttggt atttgaaaaa
     7381 ttgtcaacct tagagaataa agttaatttt tatatggctg gtggagttta tttaggcgga
     7441 gaatttatta gctctatata tcattcatca caagaatttt ctggtgaacc aataatctat
     7501 gctgaaccaa atataatttt atgtcctgct gaaaaatttt taactttaaa acgagttttc
     7561 cataatggaa atatttttaa tatgaatcag ataattactt ttttatccaa taaacaagga
     7621 ggagtacatt ttgataaaaa ttacgataaa tataaaactt ggcaagttgc tatagaaaaa
     7681 gcagcaaatt ttttaaaact cggtaatcca tataatgaag ataaattatc tcttagtgaa
     7741 gaacatgata ctattttagt agttttacca ttagaaaaag gatatgaatg gaattgtctt
     7801 gagatagaag tactatccgc tgctcaatct ctagcaaata tctattgcaa caaagttcgc
     7861 ctcatagatg gtcatgtttg gaaggaataa aagaaaaagc atagttggta atttttagtt
     7921 acgtagggtg ggcttcagcc caccgttttt tcatttttga ttgttgattg gtgggctaaa
     7981 gcccacccta cggttactaa aatcccgtca ttacctcgca ggcgggaatc cggtttgttc
     8041 ggtttcggtt ttttagggac agtgccgcaa cattaaattt ccagattccc actttcgcac
     8101 aaataacagc gcaaataggg caaagataag gatatgggtt tttttctttg aatttactat
     8161 acaattcgcc cgtccccgtt atagaaaccc aagccgatga aaaccctgct ccaactccaa
     8221 accgccgcac aaaacttcgc cgcctactac aaagaccaaa ccgacgaacg ccgcgagaaa
     8281 gacaccttct ggaacgaatt tttcgccatt ttcggcatcg accgcaaaaa cgtcgcccac
     8341 ttcgaatacc ccgtcaaaga ccctgccgac aacacccaat tcgtcgatat attttgggag
     8401 ggcatcttcc ttgccgaaca caaatccgcc aacaaaaacc tgaccaaggc caaagagcag
     8461 gcggagcgtt atttgcagga aatcgggcgc accaagccct ctgcgctgcc cgaatattac
     8521 gccgtcagcg attttgccca tttccacctt tatcgccgcg tacctgaaga aggcgtggaa
     8581 aaccaatggc agttcccttt ggaagcattg cccgaataca tcacgcgcgg cgttttcgac
     8641 ttcatgttcg gcatcgaagc caaagtccgc caaattcaag aagaagccga tattcaagcg
     8701 gcggcggcca tcggcaggct gcacgacgcg ctcaaagaag aaggcattta cgaagaacac
     8761 gagctgcgcc tcttcatcac gcgcctgctt ttcctctttt ttgccgacga cagcgccgtt
     8821 ttccagcgca actatctctt tcaagacttt ttagaaagct gcaaagaaac cgacacgctc
     8881 ggcgacaagc tcaaccaact ctttgaattc ctcaacacac ccgaccaaaa gcgcagcaag
     8941 acccaaagcg aaaaatttaa aggtttcgaa tacgtcaacg gcggcctgtt taaagaacgc
     9001 ctgcgcacct tcgacttcac cgccaagcag caccgcgcct taatcgactg cggcaatttc
     9061 gactggcgca ac
//
LOCUS       DAXHPV010000073         9001 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.073, whole genome shotgun sequence.
ACCESSION   DAXHPV010000073 DAXHPV010000000
VERSION     DAXHPV010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9001)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9001)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9001
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.073"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(62..1204)
                     /locus_tag="ACFM6C_001213"
     CDS             complement(62..1204)
                     /locus_tag="ACFM6C_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HFC6158670.1"
                     /translation="MNTLYTLFATCPRGLETVLSQELESLGCTDVQVFDGGVSCRGGL
                     EQVYAANLHSRTASRILLRLTKGTYRNERDIYKLAKNINWFNWFTLQQTFKVKVEAKR
                     ANVKSIQFVGLTVKDAVCDAFRDIYDARPSVDKAAPDVRIHAFLNERNVEIFIDTSGE
                     ALFKRGYRLDTGEAPLRENLAAGLLLSAGYDGTQPFQDPFCGSGTIAIEAAWIAARRA
                     PGMMRRFGFEKLQNFDKTLWSDLRRRAEAQVKPAFAPISGSDSDRRIVQTALDNARSA
                     EVDDIVSFSVADAQSVRPNGVGGIMVSNPPYGVRLEEVRALQALYPQLGTWLKKHYAG
                     WQVGMFTGDREMPKFMRLSPKRKIPLYNGNLDCRLFLIDMVQGSNR"
     gene            complement(1253..1675)
                     /locus_tag="ACFM6C_001214"
     CDS             complement(1253..1675)
                     /locus_tag="ACFM6C_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158671.1"
                     /translation="MNKNRKLLLAALLLIAFAAVKLVLLQWWQAQQPQAVAAQCDLTE
                     GCTLPDGSRVRAAAVSTKKPFDIYIEHAPAGTEQVSISFSMKNMDMGFNRYMFERQPS
                     GTWQAVRIRLPICVEGRRDFTADITIGSRTFQTAFTAE"
     gene            complement(1668..2477)
                     /locus_tag="ACFM6C_001215"
     CDS             complement(1668..2477)
                     /locus_tag="ACFM6C_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003701594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HFC6158672.1"
                     /translation="MIQDTRPLIRVVAGILLDSDGNYLLSSRPEGKPYAGYWEFAGGK
                     VEAGETDFQALQREFEEELGIRILAATPWLTKIHSYEHARVCLKFLWVNPDQWTGKPQ
                     SREGQEWSWQKAGDFTVAPMLPANGALLRSLSVPRRLYGSLKTGLHGENSMGAYRVLP
                     LGSAEGSGANVLMEAAQWQDRPEHADSVWMVVQTREQWRRAQEKGADAVVWRVCDDVQ
                     AQEAAEALRQGVSVPLVLAANGQTVARYGKLWLGLGAHVVVRDETIGKNHE"
     gene            complement(2559..2936)
                     /gene="acpS"
                     /locus_tag="ACFM6C_001216"
     CDS             complement(2559..2936)
                     /gene="acpS"
                     /locus_tag="ACFM6C_001216"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HFC6158673.1"
                     /translation="MIYGIGTDIVSLKRIIRLNKKFGQAFAGRILTPEELLEFPQAGK
                     PVNYLAKRFAAKEAFAKAVGTGIRGAVSFRNIGIGHDALGKPEFFYGPALSKWLEEQG
                     ISRVSLSMSDEEDTVLAFVVAEK"
     gene            complement(3136..3903)
                     /locus_tag="ACFM6C_001217"
     CDS             complement(3136..3903)
                     /locus_tag="ACFM6C_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013107841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HFC6158674.1"
                     /translation="MQEIMQSIVFVAAAILHGITGMGFPMLGTTALAFIMPLSKVVAL
                     VALPSLLMSLLVLCSNNKKGFWQEIVYYLKTYKLLAIGSVVGSILGVKLLLILPVSWL
                     LLLMAIITLYYSVNGILNVCAKAKNIQVVANNKNMVLFGFLAGIIGGSTNAMSPILLI
                     FLLSETENKNRIVKSSNLCYLLAKIVQIYMLRDQYWLLNKSEYGLIFLLSVLSVIGLY
                     VGIRLRTKISPNFFKMLIFIVLLVLALKIGHSGLIKL"
     gene            complement(3913..4692)
                     /locus_tag="ACFM6C_001218"
     CDS             complement(3913..4692)
                     /locus_tag="ACFM6C_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HFC6158675.1"
                     /translation="MNQKYILSANNNSLIEEIHNTVQSIGYCIVRGLNLNHLDDSRRN
                     KKLFDFLSQLGMLTNHKDDGFKSIFLDIKYRGDDYVINNDITFSEDVGECPLHSDSSF
                     SENPESYLVMYVVKSANDGGNSLFLSSSDIVNQLSKTETGKKHLKTLTGNLYPFKTPT
                     SFDKKQGVIWGNILSLNTQMIRFRSDCIYKGIEENRNKVSKEMVLALDYLVNVIKNAS
                     DIQEFSAQDDGLIIIDNVNGLHARTDYTDKNRHYIRARITV"
     gene            complement(4691..4798)
                     /locus_tag="ACFM6C_001219"
                     /pseudo
     CDS             complement(4691..4798)
                     /locus_tag="ACFM6C_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(4844..5572)
                     /gene="pdxJ"
                     /locus_tag="ACFM6C_001220"
     CDS             complement(4844..5572)
                     /gene="pdxJ"
                     /locus_tag="ACFM6C_001220"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HFC6158676.1"
                     /translation="MLLGVNIDHIATVRNARGTTYPSPVEAALVAETHGADLITMHLR
                     EDRRHIKDADVFAVKNAIRTRLNLEMALTEEMLENALKVMPEDVCIVPEKRQEITTEG
                     GLDVLAQQEKIAEFTKILTDAGIRVSLFIDADDRQIQAAYDVGAPVVELHTGAYADAR
                     SHAEQLKQFERLQNGAHFAGDLGLVVNAGHGLTIHNVTPIAQILAIRELNIGHSLIAQ
                     ALFLGLPEAVRQMKEAMFRARLLP"
     gene            complement(5625..6368)
                     /gene="recO"
                     /locus_tag="ACFM6C_001221"
     CDS             complement(5625..6368)
                     /gene="recO"
                     /locus_tag="ACFM6C_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HFC6158677.1"
                     /translation="MSEHRVNHEPVFLLASSPWRESSLRVEAFSRRYGRVALLARSAR
                     KRQSELRGVLVSFVPVSASWYGSQELKTLHRAEWVGGWRQPQGRALFSGLYVNELVLK
                     LTAREDPMPELYDALAKVMEAVCREANHIADLRRFEWKLLNALGVAPDLHADGTGGDI
                     LADKTYRLMPEEAVMPVCEDADALSHEAGAIVEGQSLIDLREGSFRTAESLQQALKIT
                     RLLIGTLLPEGLKSRQVLEQIRQFDRNTA"
     gene            complement(6402..7529)
                     /gene="pheA"
                     /locus_tag="ACFM6C_001222"
     CDS             complement(6402..7529)
                     /gene="pheA"
                     /locus_tag="ACFM6C_001222"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HFC6158678.1"
                     /translation="MLECTINYCSGEIMSQTIDELLIPHRNAIDTIDAEILRLLNERA
                     QHAHAIGELKGTGAVYRPEREVAVLRRIQDLNKGPLPDESVARLFREVMSECLAVERP
                     LTIAYLGPQGTFTQQAAIKHFGHAAHTMACPTIDNCFKQVETRQADYLVAPVENSTEG
                     SVGRTLDLLAVTALQACGEVVLRIHHNLLRKNNGSTEGIAKVFSHAQALAQCNDWLGR
                     HLPNAERIAVSSNAEAARLVAESDDGTVAAIAGRTAAEIYGLDMVAECIEDEPNNTTR
                     FLVMGHHETGASSSDKTSLAVSAPNRAGAVASLLQPLTESGISMTKFESRPSKSVLWE
                     YLFFIDIEGHRQDAQIQTALERLGERASFVKVIGSYPTAVL"
     gene            complement(7566..8798)
                     /locus_tag="ACFM6C_001223"
     CDS             complement(7566..8798)
                     /locus_tag="ACFM6C_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HFC6158679.1"
                     /translation="MPSAHYPEMSEKLMAVLMAMLVTLMPFSIDAYLPAIPEMAQSLN
                     ADVHRIEQSLSLFMFGTAFGQVVGGSVSDIKGRKPVALTGLAVYCLAVAAIVFASSAE
                     QLLNLRVVQAFGAGMTVVIVGAMVRDYYSGRKAAQMFALIGIILMVVPLVAPMVGALL
                     QGLGGWQAIFVFLAAYSLVLLGLVQYFLPKPAVGGKIGRDVFGLVAGRFKRVLKTRAA
                     MGYLFFQAFSFGSMFAFLTESSFVYQQLYRVTPHQYAWAFALNIITMMFFNRITAWRL
                     KTGAHPQSILLWGIVVQFAANLSQLAAVLFFGLPPFWLLVACVMFSVGTQGLVGANTQ
                     ACFMSYFKEEGGSANAVLGVFQSLIGAGVGMAATFLHNGSATVMAVTMTASTSCGIAL
                     LWLCSHRAWKENEQSEYL"
BASE COUNT         2100 a         2409 c         2345 g         2147 t
ORIGIN      
        1 tcggccggat attaaaaaag ccgtctgaac atttttcaga cggctttttt gtacactttc
       61 ctcaacggtt cgatccctgc accatatcaa tcaggaacag gcggcagtcg aggttgccgt
      121 tataaagcgg aattttccgc ttgggcgaca ggcgcatgaa tttgggcatt tccctgtcgc
      181 cggtaaacat accgacctgc cagccggcat agtgtttttt caaccacgtc cccaactgcg
      241 gatacagtgc ctgcaaagcg cggacttcct caaggcgcac accgtagggc ggattggaca
      301 ccataatgcc gcccacgccg ttcggccgga cggactgcgc atcggcaacg ctgaaggaaa
      361 cgatgtcgtc cacttcggca ctgcgtgcgt tgtccaatgc cgtctgaacg atgcggcggt
      421 cgctgtcgct gcccgaaatc ggtgcaaaag caggtttgac ctgcgcttcg gcacggcggc
      481 gcaaatccga ccacagcgtt ttatcgaaat tttgcagttt ctcaaaaccg aagcggcgca
      541 tcatacccgg cgcgcggcgg gcggcaatcc aagcggcttc gatagcaatc gtgccgctgc
      601 cgcaaaacgg gtcttgaaac ggctgcgtgc cgtcgtagcc tgccgagagc agcagtccgg
      661 cggcaaggtt ttcgcgcagc ggggcttcgc cggtatccag gcggtagccg cgtttgaaca
      721 gggcttcgcc cgaagtgtca ataaagattt cgacattgcg ttcgttcaaa aaggcgtgga
      781 tgcggacatc gggcgcggct ttgtccacgc tcggacgtgc gtcgtaaatg tcgcggaaag
      841 cgtcgcagac ggcatctttg acggtcagtc cgacaaattg gatgctctta acgttggcac
      901 gctttgcctc gactttgact ttgaacgtct gctgtaaagt aaaccaatta aaccagttga
      961 tatttttggc gagtttgtag atgtcgcgct cattgcggta tgtccctttg gtcaggcgca
     1021 gcaggatacg gctggcagta cgcgaatgca ggttggcggc gtaaacctgt tccaatccgc
     1081 cccggcagga aacgccgccg tcaaacactt gtacatcggt acagccgagg ctttcgagtt
     1141 cttgagataa aacggtctcc aagccgcgcg ggcaggtggc gaaaagtgta tataaagtat
     1201 tcataacgtg tcctttccgg acggatgttc cggcaatggc ggattgaaag gtttattcgg
     1261 cggtaaatgc cgtctgaaat gtccgactgc cgattgtaat gtccgccgta aaatcgcgcc
     1321 tgccttcgac acagatgggc aggcggatgc gtactgcctg ccaagtcccc gacggttgcc
     1381 gctcgaacat atagcggttg aaacccatat ccatattttt catactgaag ctgatgctga
     1441 cctgttccgt gccggcgggc gcgtgttcga tataaatatc aaacggtttt ttggttgaaa
     1501 cggcggcggc gcggacgcgg cttccgtccg gcagcgtgca accctcggtc aaatcgcatt
     1561 gcgccgccac agcttgcggc tgctgcgcct gccaccattg caacaaaacg agcttgacgg
     1621 cggcaaaggc aatcagcagc agtgcggcaa gcagtaattt acggttttta ttcatgattc
     1681 ttccctattg tttcatccct taccaccacg tgcgccccca atccgagcca tagttttcca
     1741 taacgtgcaa ccgtctgtcc gtttgctgca agtacgagcg gcacggatac gccctgccgc
     1801 agggcttctg ccgcctcttg tgcctgaaca tcatcgcaca cgcgccaaac gaccgcatcc
     1861 gcgccctttt cctgcgcccg ccgccattgt tcgcgggtct gcaccaccat ccacacgctg
     1921 tcggcgtgtt cgggtctgtc ctgccattgc gccgcctcca tcaaaacgtt cgcaccgctt
     1981 ccctctgccg aacccaaagg caggacgcgg tacgcgccca tactgttttc tccgtgcaaa
     2041 cccgttttca ggctgccgta caaacggcgc gggacggaca gcgaacgcaa aagcgcgccg
     2101 ttggcgggca gcatgggggc aacggtaaaa tcacccgcct tctgccaaga ccattcctgc
     2161 ccttcgcggg attgcggttt gcccgtccat tggtcggggt tgacccatag gaatttcagg
     2221 cagacgcggg cgtgttcgta ggaatggatt ttggtcaacc aaggcgtggc ggcgaggatg
     2281 cggatgccga gttcttcttc aaactcgcgt tgcagggctt ggaagtcggt ttcgcccgct
     2341 tcgaccttgc cgccggcaaa ttcccaatat ccggcatagg gtttgccttc ggggcgcgag
     2401 ctgagcaggt agttgccgtc tgaatcgagc aggatgccgg caacgacgcg gataaggggt
     2461 cgggtgtctt gaatcatggc gggtacgcgg ttggtcggtc ggagtgcaaa tgagggacgg
     2521 gcaatgccgt caacgggttt gccgcatttc agacggcatt atttttcggc aacgacaaac
     2581 gccaatacgg tgtcttcttc gtcgctcatg ctgaggctga cgcggctgat gccttgttcc
     2641 tccagccatt tggacagggc ggggccgtag aaaaattcgg gcttgcccaa tgcgtcatgc
     2701 ccgatgccga tgttgcggaa ggaaaccgcg ccgcgtatgc ccgtgccgac ggctttggca
     2761 aaggcttctt tggcggcaaa gcgtttggcg aggtagttga cgggtttgcc cgcttgcgga
     2821 aattcaagca gctcttccgg agtgaggatg cgcccggcaa acgcctgtcc gaattttttg
     2881 tttaagcgga tgatgcgctt gagggaaaca atgtctgtac cgatgccgta aatcatattt
     2941 gcgctccttc gcccttggtt gcgggtagtg atgaatgtga tgatgaatgc cgtcaatttc
     3001 ttggggtgtt aaaatggcgt gaatatccac ttttggggtt ttgtcggtaa caattttcac
     3061 tgtaaccttt tgcatttgaa attctaaaac atcgtgccaa ttatttaata aggagttaag
     3121 gcatttaata atgaattaaa gtttgattaa acccgaatgc ccgattttca gagccaatac
     3181 caataaaaca ataaaaatta acattttaaa aaaatttggg ctaatcttag tccttaaccg
     3241 aattccaaca tacaatccaa taacagacaa tacggacagt aaaaatatta aaccgtattc
     3301 actcttattt aataaccaat actggtctct tagcatatat atttgaacaa ttttcgccaa
     3361 aagatagcat agattgcttg attttacgat acgattttta ttttctgttt cgctaagcaa
     3421 aaatattaac aatatgggag acatggcatt ggttgaaccg ccgatgatgc ctgccaaaaa
     3481 cccaaaaaga accatattct tattattggc aactacttga atattttttg cttttgcaca
     3541 tacatttaaa ataccattga cagaataata caatgtaatg attgccatca gtaaaagcag
     3601 ccaagacact ggaagtatca aaagcaactt cacccccaaa atgctgccaa cgacgctgcc
     3661 gatagcaagc aatttatagg tttttaaata ataaacaatc tcttgccaaa aacccttttt
     3721 gttattgctg catagaacca acaagctcat taacaggctt ggtaatgcca ccaaggcaac
     3781 aaccttagac aatggcatga taaaagccaa tgcggttgta ccgagcatcg gaaatcccat
     3841 gcctgtaatt ccgtgcagta ttgcggcagc aacaaaaacg atagattgca ttatttcttg
     3901 cataaccgtc ctttatacag taattcttgc tctaatataa tgcctgtttt tatccgtata
     3961 atcagttctg gcatgcaagc cattgacatt gtcaataata atcaaaccat catcttgtgc
     4021 agaaaattct tgaatatcac tcgcattttt tataacattt acaagataat caagtgcaag
     4081 taccatttcc tttgatactt tatttctatt ttcttcaata cctttataga tacaatcact
     4141 tctaaatcta atcatttgtg tattgagcga taagatatta ccccatatca caccttgttt
     4201 tttatcaaat gatgttggtg ttttaaatgg atataaattg cccgttaatg tttttaagtg
     4261 ttttttaccg gtttctgttt tagataactg attgacaata tctgatgaac ttaaaaatag
     4321 ggaattacct ccatcattgg ctgattttac tacatacata accaaataac tttccgggtt
     4381 ttcactaaaa gatgaatcac tatgaagtgg acattctcca acatcttccg agaaagttat
     4441 atcattattt attacatagt catcgccgcg atatttaata tccaaaaata tagatttaaa
     4501 accatcgtct ttgtggtttg tcagcattcc taattgagat agaaagtcaa ataatttctt
     4561 gtttctccgg ctgtcatcaa gatggtttag attaagaccg cgaacaatac aatacccaat
     4621 actctgtact gtattgtgaa tttcttctat caaactatta ttgtttgcag ataaaatata
     4681 cttttgattc atatagtgaa ttaaatttaa accagtacgg cgttggcttg ccttgccgta
     4741 ctatttgtac tgtctgcggc ttcgccgcct tgtcctgatt taaatttaat ccactataac
     4801 atatccctgt cgtgaaatgc tgtctgaaag ggtttgcctg cccttacggc agcagccttg
     4861 ccctgaacat cgcctccttc atctggcgca cggcttcggg cagtccgagg aagagggctt
     4921 gggcaatcag cgaatgcccg atgttcagtt cgcggatggc gaggatttgg gcgatggggg
     4981 taacgttgtg tatggtcagt ccgtgtccgg cgttgacgac caagcccaaa tcgccggcaa
     5041 aatgcgcgcc gttttgcaga cgctcgaatt gcttgagttg ttcggcgtga ctgcgtgcat
     5101 cggcatatgc gccggtgtgc agctcgacaa cgggcgcgcc gacatcatag gcggcttgga
     5161 tttgcctgtc gtcggcatcg ataaacaaag acacgcgtat gcccgcgtcg gtcaggattt
     5221 tggtgaattc ggcgattttt tcctgttgcg ccaatacgtc caaaccgcct tcggtcgtga
     5281 tttcctgccg tttttcaggc acgatgcaca cgtcttccgg catcacttta agcgcgtttt
     5341 cgagcatttc ttccgtcaac gccatttcaa ggttcaggcg cgtgcggatg gcgtttttga
     5401 cggcaaacac gtccgcgtct ttgatgtggc ggcggtcttc gcgcaggtgc atggtaatca
     5461 ggtcggcacc gtgcgtttcg gcaaccagtg ccgcctccac ggggctggga taagtcgtgc
     5521 cgcgcgcgtt gcggacggtg gcgatgtggt cgatgttgac acccaaaagc ataatgtttc
     5581 cttttctctt cgtttttctg tttggcggca tggtgtgggc gcagctacgc ggtattgcgg
     5641 tcaaactgcc ttatctgttc caacacctgc cgcgatttca agccttcggg aagcagcgtg
     5701 ccgatcagca gccgtgtgat tttcaatgcc tgttgcaggc tttcggcggt gcggaaactg
     5761 ccttcgcgca aatcgatcag gctttgccct tcgacaattg cgccggcctc gtgcgaaagc
     5821 gcgtctgcgt cctcgcatac gggcatgacc gcctcttcgg gcatcagccg gtaggttttg
     5881 tccgccaaaa tatcgccgcc cgtgccgtcg gcgtgcaaat cgggggcaac gcccaaggca
     5941 ttgagcagct tccactcgaa gcggcgcaaa tcggcaatgt ggttggcttc acgacacacc
     6001 gcctccatca cttttgccaa cgcgtcgtac agttcgggca tcggatcttc gcgcgcggtc
     6061 agtttcaaca ccagttcgtt cacatacaga ccgctgaaca acgccctgcc ctgcggctgc
     6121 cgccatccgc cgacccattc ggcacggtga agggttttga gttcctgact gccgtaccac
     6181 gacgcgctga cgggcacgaa agaaaccagc acgccgcgca attcgctctg ccgcttgcgc
     6241 gcgcttcttg ccaaaagtgc cacacgcccg taacggcggc tgaaggcttc gacccgcagg
     6301 ctgctttcgc gccatggcga ggaagccaac agaaagacgg gttcgtggtt gactcggtgt
     6361 tcggacatca tgcctgaaat gccgtctgaa cgctgctgcc gctacaaaac ggcggtcggg
     6421 tacgaaccga tgactttgac gaacgaagcg cgttcgccca agcgttccaa tgccgtctga
     6481 atctgcgcgt cctggcggtg tccttcgatg tcgatgaaga acaggtattc ccacaaaacg
     6541 gatttgctcg gacggctctc aaacttggtc atggaaatac ccgactcggt cagcggttgc
     6601 agcagcgagg caaccgcacc ggcgcggttg ggcgcggaaa cggccagcga agtcttgtcg
     6661 ctgctgcttg caccggtttc gtgatgtccc atcaccaaga agcgcgtggt gttgttcggt
     6721 tcgtcttcga tgcactcggc aaccatatcg agtccgtaga tttccgccgc cgtgcgtccg
     6781 gcgatggcgg caaccgtacc gtcgtccgat tcggcaacca gccttgcggc ttcggcattg
     6841 ctggacacgg caatccgttc ggcgttgggc aggtgtctgc ccaaccagtc gttgcactgc
     6901 gccaacgcct gcgcgtggga aaagactttg gcaatgcctt cggtgctgcc gttgttttta
     6961 cgcaaaaggt tgtggtggat gcgcaaaacg acttcgccgc acgcctgcaa cgcggtaacg
     7021 gcaagcaaat ccaacgtgcg cccgaccgag ccttcggtcg agttttccac gggcgcgacc
     7081 agataatccg cctgacgggt ttcaacctgc ttgaagcagt tgtctatggt cggacacgcc
     7141 atggtgtgcg cggcgtgtcc gaaatgcttg atcgccgcct gctgggtaaa cgtgccctgc
     7201 ggccccagat aggcgatggt cagcgggcgt tctacggcga ggcactcgct catcacttcc
     7261 cgaaacaggc gtgctaccga ttcgtcgggc agcgggcctt tgttcaaatc ctgaatgcgg
     7321 cgcaacacgg cgacttcgcg ttcgggacgg tacactgcgc ccgtgccttt cagttcgccg
     7381 atggcgtgtg cgtgttgcgc gcgttcgttg agcaggcgca ggatttccgc atcaatggtg
     7441 tcgatggcgt tgcggtgcgg gatgaggagt tcgtcgatag tttgggacat aatttcgcct
     7501 gaacagtaat ttatcgtgca ttctaacatc aaatgccgtc tgaagcggtt tcagacggca
     7561 tcggtttaca agtattcgct ctgttcgttt tccttccacg cccggtgcga acacagccac
     7621 agaagcgcaa tgccgcaaga ggtggacgcg gtcatggtta ccgccatcac ggttgccgaa
     7681 ccgttgtgca agaaggtcgc cgccataccc acgcccgcgc cgattaagga ctggaacacg
     7741 cccaacacgg cgttcgcgct gccgccctct tctttgaaat aagacataaa gcatgcctgc
     7801 gtgttcgcgc cgaccaagcc ctgcgtgccg acggaaaaca tcacgcacgc caccaagagc
     7861 cagaacggag gcaacccgaa aaacagcacg gcggcgagtt gggacaggtt ggcggcaaat
     7921 tggacgacaa tcccccacag caggatgctt tgcggatgcg cgccggtttt gagccgccac
     7981 gcggtaatgc ggttgaaaaa catcatcgtg atgatgttga gtgcaaacgc ccaagcgtat
     8041 tgatgaggcg taacacggta aagctgctgg tacacgaagg aagattcggt cagaaaggcg
     8101 aacatcgaac cgaagctgaa tgcctgaaaa aacagataac ccatcgcggc acgggttttc
     8161 aatacgcgtt tgaaccgccc agccaccagc ccgaacacat cccgtccgat tttgccgccg
     8221 acggcaggct tgggcaggaa atactgcacc aaaccgagca gcaccagcga atacgccgcc
     8281 agaaaaacaa aaatcgcctg ccagccaccc aagccctgca acagtgcgcc gaccatgggt
     8341 gcgaccagcg gcacaaccat caaaatgatg ccgataaggg caaacatctg ggcggctttg
     8401 cgtccggaat aataatcgcg caccattgcg ccgacgatga ccacagtcat gcccgcaccg
     8461 aatgcctgca cgacgcgcag gttgaggagc tgttcggcac tcgaagcaaa tacgatggcg
     8521 gcaacggcaa ggcagtagac ggccagtccg gtcagcgcga cgggtttgcg ccctttgatg
     8581 tcggacaccg aaccgccgac cacctgtccg aacgccgtgc cgaacataaa caaactcagg
     8641 ctctgttcga tgcggtggac atccgcgttc agcgactgcg ccatttcggg aatcgcgggc
     8701 aggtaggcat cgatggaaaa cggcatcagc gtaaccagca tcgccatcaa aaccgccatc
     8761 agtttttcgc tcatttcagg ataatgggca gaaggcataa attctcgtcc gattcgcaaa
     8821 caaaccgccc ggcggcggaa aacacaatac gcggaaacgg aaaattttaa cacaccggca
     8881 caaacaggcg gcaacaaaag ccccggcaaa accggacgaa ccggaacgat atagtggatt
     8941 aacaaaaacc agtacagcgt tgccttgcct tagctcaaag agaacgattc tctaaggtgc
     9001 t
//
LOCUS       DAXHPV010000074         8885 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.074, whole genome shotgun sequence.
ACCESSION   DAXHPV010000074 DAXHPV010000000
VERSION     DAXHPV010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8885)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8885)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8885
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.074"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            142..571
                     /locus_tag="ACFM6C_001224"
                     /pseudo
     CDS             142..571
                     /locus_tag="ACFM6C_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219140.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4124 domain-containing protein"
     gene            complement(619..1962)
                     /locus_tag="ACFM6C_001225"
     CDS             complement(619..1962)
                     /locus_tag="ACFM6C_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HFC6158680.1"
                     /translation="MFHSVNVFTGETLYRRPAQDYAEFERQLADLKMRGRAFAQLGVT
                     ERAARLQKFADRLEAEKERFAEMVCEEVGRCLHECRAEIGKSIELIRYYARLAPELLA
                     HKTIATQASLSQVRFEPLGVVFAVMPWNYPVWQVLRFAVPAMCAGNACAVKPAPSVAR
                     VSQALFDLASDGIPLAGAWLDEAGTLKAVEDTDAMAFTGSTHTGRILAAHAGANLKKT
                     VLELGGSNAFIVMPDADLERAAAEACYSRFRDAGQSCNAAKRIIVTEAAADRFITLFL
                     AECAKLKMGDPKHPDTTLAPLHREDLRNWVHGQVEDAVLNGAVCLTGGKIPQGRGWFY
                     PATVLDRVNPACRVWREEVFGPAALILRAENEEHAIRLANDSPFGLGACIYTADTGRA
                     WRFAEKIQAGSVFINRHTSSDLRLPFGGVKDSGYGRELSEFGLYEFVNVKTYWQK"
     gene            complement(1967..2620)
                     /locus_tag="ACFM6C_001226"
     CDS             complement(1967..2620)
                     /locus_tag="ACFM6C_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HFC6158681.1"
                     /translation="MGLGMEIGKLIVAFLVLINPFSALSLYLDLTNGHSTKERRKVAR
                     TAAVAVFAVIAVFALIGGTLLKVLGISVGSFQVGGGILVLLIAISMMNGNDNPAKQNL
                     GAQPETGQARPARNAGAIAVVPIAIPITIGPGGISTVIIYASAAKTYGDIALIIAAGL
                     VVSAICYAILIVAGKVSRLLGTTGLTILNRIMGMMLAAVSVEIIVSGLKTIFPQLAG"
     gene            2771..3061
                     /gene="gatC"
                     /locus_tag="ACFM6C_001227"
     CDS             2771..3061
                     /gene="gatC"
                     /locus_tag="ACFM6C_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA];
                     GO_process: GO:0006450 - regulation of translational
                     fidelity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HFC6158682.1"
                     /translation="MALTLADVDKIAQLSRLHLTAAEKEKSLQELNDIFAMVEQMQTI
                     NTDGIEPMAHPHEAALRLREDEVTETDRAAEYQAVAPEVRNRLYIVPQVIEE"
     gene            3124..4569
                     /gene="gatA"
                     /locus_tag="ACFM6C_001228"
     CDS             3124..4569
                     /gene="gatA"
                     /locus_tag="ACFM6C_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HFC6158683.1"
                     /translation="MTQYTLKQASVLLQSKQISAVELASAYLAAIAEKNPALNGYITI
                     DQDKTLAEARAADERIAQGNASALTGVPVAYKDIFCQTGWRSACASKMLDNFISPYTA
                     TVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNLEHVPGGSSGGSAAVVA
                     ARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQTGPMAQTAE
                     DCAILLNAMAGFDPKDSTSLEREKEDYTRDLNQPLKGLKIGLPKEYFGEGNSADVLTA
                     LQNTIDLLKAQGAELIEVSLPQTKLSIPAYYVLASAEASTNLSRYDGVRYGHRAAQFA
                     DLEEMYGKTRAEGFGSEVKRRIMIGTYVLSHGYYDAYYLKAQKLRRLVADDFQTAFAR
                     CDLILAPTAPSAAPKIGADASPVETYLSDIYTIAVNLAGLPALTLPAGSSGGGLPIGV
                     QLIGNYFAEAKILGAAHQIQLNSDWHGKRPE"
     gene            4566..5498
                     /locus_tag="ACFM6C_001229"
     CDS             4566..5498
                     /locus_tag="ACFM6C_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK/YbjX family protein"
                     /protein_id="HFC6158684.1"
                     /translation="MKQNRTFTFPDFRTVYSYAPLYRLQHLKYTLRKFFGKKEIYAFE
                     QFVNASPIRQGLFLHCPQNAYPLLREFVDRRFNCKRRLDAMTADFLMAEKLFGTDILH
                     QMEDYRFHLVLAHLSDGISLWLNRNDNCVEEGAWSLSLRDEAGNRLYMATFAFVGTHL
                     LTASVQGPAGEEAKDTVRRITKQLHGLRPQQLMVTALQYFAAVLGLDGAMGIAQKHQV
                     KLRWKLKKRVKMNYDAFWQEYGASLERDGYWHLPQTPARKDLTDIESKKRSMYRKRYE
                     MLDNMVAEMKDGLKTEARGISDGIQTEKPLRRTA"
     gene            5541..6971
                     /gene="gatB"
                     /locus_tag="ACFM6C_001230"
     CDS             5541..6971
                     /gene="gatB"
                     /locus_tag="ACFM6C_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003698528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HFC6158685.1"
                     /translation="MTWETVIGLEIHVQLNTKSKIFSGASTAFGAEPNAHASVVECAL
                     PGVLPVMNREVAEKAIKLGLALDAKINQKNVFDRKNYFYPDLPKGYQISQLDLPIVEH
                     GKLEIVVGDDVKTINVTRAHMEEDAGKSVHEGLNGATGIDLNRAGTPLLEVVSEPEMR
                     SAAEAVAYAKALHSLVTWLDICDGNMAEGSFRVDANVSVRPKGQEEFGTRREIKNLNS
                     FRFLEQAINYEVEAQIEILEDGGKVQQATMLFDPEKGETRVMRLKEDAHDYRYFPDPD
                     LLPVIISDAQMQKAKAEMPKLPKEMAARFVADYGVSEYDARLLTASRAQAAYFEEAAK
                     ASGQGKPTANWMNGELAAALNKAGLELADSPITAPRLAALVGKIADGTLSSKLAKKAF
                     EAMWEEPEATIAEIIEKHGLQQMTDTGAIEAMVDEVLANNAKAVEQFKSGNEKALNAI
                     VGQVMKASKGKANPAQVQELIKAKLA"
     gene            7078..8088
                     /locus_tag="ACFM6C_001231"
     CDS             7078..8088
                     /locus_tag="ACFM6C_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HFC6158686.1"
                     /translation="MNHTVTLPDQTTFAANDGETVLAAAARQNLNLPHSCKSGVCGQC
                     KAELVSGDIQMDGHSEQALSEAEKAQGKILMCCTTAQSDISINIPGYKADALPVRTLP
                     ARIESIIFKHDVALLKLALPKAPPFAFYAGQYIDLLLPGNVSRSYSIANSPDQEGILE
                     LHIRRRENGVCSEMIFGSEPKVKEKGIVRVKGPLGSFTLQEDNGKPVILLATGTGYAP
                     IRSILLDLIRQNSSRVVHFYWGARHQDDLYALEEAQGFACRLKNACFTPVLSRPRECW
                     QGRKGHVQDIAAQDHPDLSEYEVFACGSPAMTEQAKNLFVQQHKLPENLFFSDAFTPS
                     AS"
     gene            complement(8218..8850)
                     /gene="pdxH"
                     /locus_tag="ACFM6C_001232"
     CDS             complement(8218..8850)
                     /gene="pdxH"
                     /locus_tag="ACFM6C_001232"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HFC6158687.1"
                     /translation="MDLHNIREDYSKRELSEGDCADNPIEQFERWLDEAVRAQVNEPT
                     AVNVAAVDGRGRPNSRMVLLKEVNSEGFVFFTNYHSRKGRSLDAHPFAAMTFFWPELE
                     RQVRVEGRVERLAEKLSDEYFESRPYQSRLGAWASAQSEVIPNKAVLVAKAAAVGLKH
                     PLHVPRPPHWGGYIVIPDLIEFWQGRPSRLHDRIQYRLLDGGWIRERLSP"
BASE COUNT         2297 a         2738 c         2144 g         1706 t
ORIGIN      
        1 ttttgggaat ctgttttacc ccaatatata aagcaccata ttaaggcgga gtgtcttccc
       61 cactttgacc cgaacccgga aaagacaccg cccaagccaa tcctgatgct gccccgacag
      121 ccaaccatta aggaaatcct aatgaacttt gctttatccg tcattatgtt gaccctcgcc
      181 tctttcctgc ccgtcccgcc tgccggagcc gccgtcttta cttggaagga cggcggcggc
      241 aacagctatt cggatgtacc gaaacagctt catcccgacc aaagccaaat cttaaacctg
      301 cggacgcgcc aaaccaaacc ggcggtcaaa cccgcccaag ccgacgcagg gaagcgcaca
      361 gacggcgcgg cacaggaaaa caatcccgac actgccgaga aaaaccggca gcttgaggaa
      421 gaaaagaatt gccgaaaccg aacggcagaa caaagaagaa aactgccgga tttcaaaaat
      481 gaacctgaag gcggtgggaa actcaaatgc gaaaaacaag gacgatttga ttcggaaata
      541 caataacgcc gtaaacaaat actgccgtta atcggctcta gcgcaaaccc gatgccgtct
      601 gaagcggcac gggtttgttt atttctgcca gtaggttttg acgttgacga actcgtacag
      661 cccgaattcg gacaattcgc gcccgtaacc ggaatcttta acccctccga aaggcaggcg
      721 caaatcgctg ctggtatggc ggttgataaa caccgatccc gcctgtattt tttcggcaaa
      781 ccgccaggcg cgtccggtat cggcggtata aatgcaggca ccgagcccga acggggaatc
      841 attggcaagg cggatggcat gttcttcgtt ttcggcgcgc aaaatcaggg cggccggccc
      901 gaatacttct tctctccaga cgcggcaggc aggatttacc ctgtctaaaa ccgtcgcggg
      961 ataaaaccag cctcgccctt gtgggatttt tccgccggtc aggcacaccg cgccgtttaa
     1021 aacagcatct tcaacctgcc cgtgaaccca gttccgcaaa tcttcacggt gcaacggtgc
     1081 aagcgtggta tcgggatgtt tggggtcgcc cattttcaat ttggcgcatt cggcaagaaa
     1141 cagcgtgata aaacgatcgg ctgcggcttc ggttacgatg atgcgcttgg cggcgttaca
     1201 cgattgcccc gcatcgcgga aacgggaata acaggcttct gcggcggcgc gttccaaatc
     1261 ggcatcgggc atcacgataa aggcgttgct gccgccgagc tccaacacgg ttttcttgag
     1321 gtttgcgccc gcatgtgccg caaggatgcg ccccgtatgc gtcgagccgg taaacgccat
     1381 cgcatcggta tcttcaaccg ccttgagcgt gcccgcctca tccaaccacg cgcctgccaa
     1441 aggaatgccg tctgaagcca aatcgaacaa cgcctgactg acgcgtgcca cgctgggcgc
     1501 gggtttgacg gcgcacgcgt tgcccgcgca catagcggga acggcgaaac gcaatacctg
     1561 ccagacggga tagttccaag gcatgacggc aaacaccacg cccaaaggct caaaccttac
     1621 ctgactcaaa ctcgcctgcg tcgcgatggt tttgtgggcg agcagttcgg gggcaaggcg
     1681 ggcgtaatag cgtatcagtt cgatagactt accgatttcc gcgcggcatt cgtgcaggca
     1741 gcgaccgact tcctcgcaca ccatttccgc aaaacgctct ttctccgcct ccaaacggtc
     1801 ggcaaatttt tgcagacgcg cggcacgttc ggttacgccc aattgcgcga acgccctgcc
     1861 gcgcattttc aaatccgcca gttgccgttc aaactccgca taatcttgag cagggcggcg
     1921 gtaaagcgtt tcgcccgtaa atacattgac actgtgaaac atcgaatcaa cctgccagtt
     1981 gcgggaatat cgttttcagt cccgacacaa taatctccac cgataccgcc gccagcatca
     2041 tacccataat gcggtttaaa atcgtcagcc ccgtcgtgcc cagcaggcgg ctgaccttcc
     2101 cggcaacgat taaaatggca taacaaatcg cactgaccac caaaccggcc gcaataatca
     2161 acgcgatgtc gccgtatgtt ttagccgccg aagcgtaaat aatcacggtc gaaataccgc
     2221 ccgggccgat ggtgatcggt atggcgatgg gcacgacggc aatcgctccg gcattgcggg
     2281 cggggcgcgc ctgccccgtt tccggctgcg cgccgagatt ctgcttggcg ggattgtcgt
     2341 tgccgttcat catagaaatg gcaatcagca acaccaaaat tccgccgccg acctgaaacg
     2401 aaccgacgct gatgcccaaa accttcagca gcgtaccgcc gatcagcgca aataccgcaa
     2461 tcacggcaaa cacggcaacg gcggccgtcc gcgcgacctt cctgcgctcc ttcgtgctgt
     2521 gcccgttggt caggtcaagg taaagcgaca acgcgctaaa cggattaatc agcaccaaaa
     2581 aagccacaat cagcttgccg atttccatac ccaatcccat tatttccccc tccttcaaac
     2641 ccgtgcggca ggcatccgat gctgcaaatt gccgccgcaa cggatttttc cgttataatt
     2701 aaaaattcaa gcaatacgcc ccatcatacc cgaacgacgg tatctttacc atcagacaag
     2761 gatgcttttc atggcactga cacttgccga cgtagacaaa atcgcccaac tctcccgact
     2821 gcacctgact gcggcagaaa aagaaaaatc gcttcaagaa ttaaacgaca ttttcgctat
     2881 ggtcgaacag atgcaaacca ttaacacaga cggtatcgaa ccgatggcgc acccgcacga
     2941 ggccgccctg cgcctgcgcg aagacgaagt aaccgaaacc gaccgcgccg ccgaatacca
     3001 agccgttgcg ccggaagtac gcaaccgcct gtacatcgta ccgcaagtta ttgaagaata
     3061 atccgaatat tcttcagacg gcatcagcaa taccgcccga agccctttaa ggatggaaga
     3121 tttatgaccc aatacacatt gaaacaggca agcgtcctgt tgcagtccaa acagatttcc
     3181 gccgtcgaac tggcaagcgc ataccttgcc gccatcgccg aaaaaaatcc cgccctcaac
     3241 ggctatatca ccatcgacca agataaaacc cttgcagaag cccgtgccgc cgacgaacgt
     3301 atcgcacagg gcaacgcttc ggcacttacc ggcgttcccg tcgcctacaa ggatattttc
     3361 tgccaaaccg gctggcgcag cgcgtgcgct tccaaaatgc tcgacaactt catctccccc
     3421 tacaccgcca ccgtcgtcca aaacctgctc gacgaaggta tggtaacgct cggccgcacc
     3481 aatatggatg agttcgctat gggttcgacc aatgaaaact cattctacgg tgcagccaaa
     3541 aacccatgga atcttgagca cgtccccggc ggttcgtcag gcggttccgc cgccgtcgtt
     3601 gccgcgcgcc tcgcccctgc cgcgctcggt tcggacaccg gcggctctat ccgccaaccc
     3661 gcatcgcact gcggcattac cggcatcaaa cccacatacg gcacggtttc ccgcttcggt
     3721 atggtcgcct acgcctccag cttcgatcaa accggcccga tggcgcaaac tgccgaagac
     3781 tgcgcgattc tgttaaacgc gatggcaggt ttcgacccca aagactccac cagcctcgag
     3841 cgcgaaaaag aagactacac ccgcgatttg aaccaaccgc tcaaaggttt gaaaatcggc
     3901 ctgcccaaag aatatttcgg cgaaggcaac agcgccgatg ttctgacggc attgcaaaac
     3961 accattgatt tgctgaaagc ccaaggcgcg gaattgattg aagtttccct gccgcaaacc
     4021 aagctgtcca tccccgccta ctacgtcctc gcctccgcag aagccagcac caacctttca
     4081 cgttacgacg gcgtacgtta cggacaccgt gccgcccaat tcgccgattt ggaagaaatg
     4141 tacggcaaaa cccgcgccga aggtttcggc agcgaagtca aacgccgcat catgatcggc
     4201 acttatgtac tgtcgcacgg ctactacgat gcctactatc tcaaagccca aaaactgcgc
     4261 cgcctcgttg ccgatgattt tcagacggca tttgcacggt gcgacctcat cctcgcgccg
     4321 accgcaccct ccgccgcacc caaaatcgga gcggatgctt cgccggttga aacctacttg
     4381 agcgatatct acaccatcgc cgtcaacctc gccggactgc ccgcattgac cctgcccgca
     4441 ggctccagcg gcggcggact gcccatcggt gtacagctta tcggcaacta cttcgccgaa
     4501 gccaaaatcc tcggtgcggc gcatcaaatc caactcaaca gcgattggca cggcaaacga
     4561 cccgaatgaa gcagaaccga acctttacct tccccgattt tcgcaccgtt tacagctatg
     4621 cgcctttata tcggctgcaa catttaaaat acacattgcg aaaatttttc ggaaaaaaag
     4681 aaatttacgc cttcgagcag tttgtcaacg cctcccctat ccgtcagggg ctgttcctcc
     4741 actgcccgca aaatgcctat ccgctactgc gcgaatttgt tgacaggcgt tttaactgca
     4801 aacgccgttt agatgcgatg acggcagatt ttctcatggc ggaaaaactg ttcggcacag
     4861 acatcctgca ccaaatggaa gactaccgct tccatttggt cttggcgcac ctttcagacg
     4921 gcatcagctt gtggctcaac cgcaacgaca actgcgtcga agaaggcgcg tggtctttat
     4981 ctttgcgcga cgaagcaggc aaccggctgt atatggcgac cttcgccttt gtcggcacac
     5041 acctgctgac agcctccgta caagggccgg cgggtgaaga agccaaagac accgtccgcc
     5101 gcataaccaa acaactccac ggcttgcgtc cccaacaact gatggtaacc gccctgcaat
     5161 atttcgccgc cgtactcggc ttggacggcg caatgggcat tgcacaaaaa catcaggtca
     5221 aactgcgctg gaaacttaaa aagcgtgtca aaatgaatta cgacgcattc tggcaggaat
     5281 acggcgcaag tttggaacgg gacggctact ggcatctccc ccaaaccccc gcccgcaaag
     5341 accttaccga catcgaaagc aaaaaacgct cgatgtaccg caagcgttat gaaatgctgg
     5401 acaacatggt tgcagagatg aaggacggtc tgaaaacaga agcacgcggc atttcagacg
     5461 gcatccaaac ggaaaaaccg ctccgccgga cagcctgacg cgaagactat cgaattgata
     5521 ttttagagaa agaagctctt atgacctggg aaaccgtaat cggcttggaa atccacgtcc
     5581 aattgaacac caaatccaaa atcttcagcg gcgcatcgac cgcattcggc gcagaaccca
     5641 acgcgcacgc cagcgtggtg gaatgcgcgc tgccgggcgt actgccggta atgaaccgtg
     5701 aagtcgctga aaaagccatc aaattgggtt tggctttaga tgcgaaaatc aatcagaaaa
     5761 acgtgttcga ccgcaaaaac tacttctatc ccgacttgcc caaaggctat caaatcagcc
     5821 agttggactt accgattgtc gaacacggca aattggaaat cgtggtcggc gacgatgtga
     5881 aaaccatcaa cgtaacccgc gcccatatgg aagaagacgc gggcaaatcc gtgcatgaag
     5941 gcttaaacgg cgcgaccggt atcgacctga accgcgcagg cacaccgctg ttggaagtcg
     6001 tatccgaacc cgaaatgcgc tccgccgccg aagccgttgc ctacgccaaa gccctgcaca
     6061 gtttggtaac ctggctggac atttgcgacg gcaatatggc ggaaggttcg ttccgcgtcg
     6121 atgccaacgt atccgtgcgc ccgaaaggtc aagaagagtt cggcacgcgc cgcgagatta
     6181 aaaacctcaa ttccttccgc ttcttggagc aggcgattaa ttacgaagtg gaagcgcaaa
     6241 tcgagatttt ggaagacggc ggcaaagtac agcaggcaac catgctattc gaccctgaaa
     6301 aaggcgaaac ccgcgtgatg cgcctgaaag aagacgcgca cgactaccgc tacttccccg
     6361 atcccgattt gctgcccgtc atcatttcag atgcccaaat gcaaaaagcc aaagcagaaa
     6421 tgcccaagct gccgaaagaa atggcggcgc gtttcgtggc ggattacggc gtgtccgaat
     6481 acgacgcgcg cctgctgacc gcaagccgcg cacaggccgc ctattttgaa gaagccgcca
     6541 aagcaagcgg acaaggcaag ccgactgcca actggatgaa cggcgaactc gccgccgcgc
     6601 tgaacaaagc cggcctggaa cttgccgaca gcccgattac cgccccgcgc ctcgccgcgc
     6661 tggtgggcaa aatcgccgat ggcacattaa gcagcaaact ggcgaaaaaa gcctttgaag
     6721 ccatgtggga agaacccgaa gccaccattg ccgaaatcat tgaaaaacac ggtttgcaac
     6781 agatgaccga taccggcgcg attgaagcca tggtggacga agtgctggcc aacaacgcca
     6841 aagccgtgga acagtttaaa tccggcaacg aaaaagccct gaatgcgatt gtgggacaag
     6901 tgatgaaggc cagcaaaggc aaagcgaatc ccgcgcaggt gcaggagttg attaaagcta
     6961 aactggctta atccgttatc acacaggtcg tctgaaagca aagttccaac gaaggtaaaa
     7021 caggaaataa gctttcagac ggccttttaa cttaatctgc tcaaaccata ccaagacatg
     7081 aaccacaccg ttaccctgcc cgaccaaacc acctttgccg ccaacgacgg tgaaaccgtt
     7141 ttggccgctg ccgcccgaca aaacctcaac ctgccccatt cctgcaaaag cggtgtctgc
     7201 ggacaatgca aagccgaact ggtcagcggc gatattcaaa tggacggaca ctcggaacag
     7261 gctttatccg aagcagaaaa agcgcaaggc aagattttga tgtgctgcac cactgcgcaa
     7321 agcgatatca gcatcaacat ccccggctac aaagccgatg ccctacccgt ccgcaccctg
     7381 cccgcacgca tcgaaagtat tattttcaaa cacgatgtcg ccctcctgaa acttgccctg
     7441 cccaaagccc cgccgtttgc cttctacgct gggcaataca ttgatttact gctgccaggc
     7501 aacgtcagcc gcagctactc catcgccaat tcgcccgacc aagaaggcat tttggaacta
     7561 cacatccgca ggcgcgaaaa cggtgtctgc tcggaaatga ttttcggcag cgaacccaaa
     7621 gtcaaagaaa aaggcatcgt ccgcgttaaa ggcccgctcg gttcgtttac cttacaggaa
     7681 gacaacggca agcccgtcat cctgctggca accggcacag gctacgcccc catccgcagc
     7741 atcctgctcg accttatccg ccaaaacagc agccgcgtcg tccatttcta ctggggcgcg
     7801 cgtcatcagg atgatttgta tgccctcgaa gaagcacaag gattcgcatg ccgtctgaaa
     7861 aacgcctgct tcacccccgt attgtcccgc cccagagagt gctggcaagg aagaaaaggc
     7921 cacgtacaag acatcgcggc acaagaccac cccgacctgt cggaatacga agtatttgcc
     7981 tgcggctctc cggccatgac cgaacaagca aaaaatctgt ttgtgcaaca gcataagctg
     8041 ccggaaaact tatttttctc cgacgcattc acgccgtccg catcataatt ccccggtata
     8101 aaaaagattc aggctttccg ttcggaacac aaaaaacttc ccgtccgtat tttccccgtg
     8161 aaaaaatgcc gtctgaaacc cgattcctgt tttcagacgg catatgtttt ttcctgttca
     8221 aggcgacagc cgctcgcgta tccagccgcc atccagcaaa cggtattgga tgcggtcgtg
     8281 cagcctgctc ggcctgccct gccaaaactc aatcaaatcg ggaatcacaa tatagccgcc
     8341 ccaatgcggc ggacgcggca cgtgcaaagg atgtttgagt ccgaccgccg ccgcctttgc
     8401 caccaatacc gccttgttcg gaatcacctc gctctgcgca cttgcccacg cacccaaacg
     8461 gctctgatac gggcggctct caaaatattc gtccgacaac ttctccgcca gcctttcaac
     8521 acgcccttcc acgcgcacct gacgctccag ctccggccaa aaaaacgtca tcgccgcaaa
     8581 tggatgagca tccagcgaac gccccttgcg gctgtgataa ttcgtaaaga aaacaaaacc
     8641 ttcagaatta acttccttca gcagcaccat acggctgtta ggcctgccgc gtccgtcgac
     8701 cgccgccaca ttgaccgccg tcggctcgtt gacctgtgcg cgtaccgcct cgtccaacca
     8761 ccgctcgaac tgctcgatcg gattgtcggc gcaatcgcct tccgacaatt cccgtttgct
     8821 gtaatcttcc cgaatattgt gcaaatccat ttaccgctcc tcttaatagt ggattaacaa
     8881 aaacc
//
LOCUS       DAXHPV010000075         8802 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.075, whole genome shotgun sequence.
ACCESSION   DAXHPV010000075 DAXHPV010000000
VERSION     DAXHPV010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8802)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8802)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8802
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.075"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            170..1345
                     /locus_tag="ACFM6C_001233"
     CDS             170..1345
                     /locus_tag="ACFM6C_001233"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent flavin oxidoreductase"
                     /protein_id="HFC6158688.1"
                     /translation="MQNIFDPLVIRGKSLTPIVQGGMGVGVSASGLSSAVARENGIGT
                     IASVDLRHLHEDLLAESQINPSEEKYTSLNCTALDREIQKAKSASEGKGLIAVNVMKA
                     VKDHAAYVRQACESGADAVVMGAGLPLDLPEMTEGYHKDVALLPILSESRGINIVLKR
                     WMKKGILPDAIVVEHPAHAAGHLGASTVEGVNDAKFDFKRVIEETFEVFKSLGLESEK
                     IPLILAGGMANFEKVKTALKNWGASAVQIGTAFAVTEEGDAHLNFKKTLAGAETEKVV
                     EFMSVAGLPARGVRTKFLDSYIRREGKLQANAKADPRRCTQGLNCLTSCGLRDGLSKA
                     GQFCIDIQLAAAFRGEVDKGLFFRGKDPLPFGNAIRTVRETIQYLLTGSEPVATLGR"
     gene            complement(1556..2104)
                     /locus_tag="ACFM6C_001234"
     CDS             complement(1556..2104)
                     /locus_tag="ACFM6C_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HFC6158689.1"
                     /translation="MSQNTPIKPWYKHVWPWILMAGPIFVVIASVAMFFVAQQHATDL
                     VTDDYYKDGKHIDIQLHRDEEAVRRHIGVQVLISPDMNAAKVFVGGEFDGKQPLNLLL
                     MHPTRKADDQTVALKPVGSAQNGRAEYEAVFKTLSPTNHWYVRVEDVAGVWRVENKWI
                     TSQGNAVDLTPMDKLFNNTESK"
     gene            complement(2107..3603)
                     /gene="ccoG"
                     /locus_tag="ACFM6C_001235"
     CDS             complement(2107..3603)
                     /gene="ccoG"
                     /locus_tag="ACFM6C_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003708970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HFC6158690.1"
                     /translation="MTTENQAGSPASGIGTSEQTKAAPKAKKTFDPRASVIQIHPEGE
                     RIHPKKAEGRFAKLRIAAVLATQFVFYVIPWFNWSGRQAVVFNIPERHFFIFGLSLGV
                     GDLIYLALLLMICAFGLFWWTTIAGRLWCGYSCPQTVYTEIMLWIDNLVEGDRNKRLK
                     LEKSPWNFTKIRIKATKYLLIFLVCAWTGITFAGWFVPIRQFVPDLFTGAAGGGAMFA
                     TAFYGFMTFFFAHIMREKVCLHMCPYARFQSAMFDKDTLIVSYDAERGEPRGARKKTV
                     NKEEAGLGDCINCAMCVQVCPVGIDIRNGLQYQCIGCAACIDACDEIMDKMGYPRGLI
                     RYTTESALEHEYSEKDIKKRLLRPRVAGYGAVLAVVIAAFLVGLSTRKMVEVDILKDR
                     GVLVRENAKGWLENAYSLRIINKSEKEQLITASVKGFDEIALTGLPEGGIKVAPRETV
                     TLPVQVSTIPEYADKGSHPIEFTFQYRESGAPDGKPVVLEEDATFIGE"
     gene            4134..6113
                     /gene="tkt"
                     /locus_tag="ACFM6C_001236"
     CDS             4134..6113
                     /gene="tkt"
                     /locus_tag="ACFM6C_001236"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004802 - transketolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HFC6158691.1"
                     /translation="MSQLANAIRFLSADAVQKANSGHPGAPMGMAEMAETLWTKFLNH
                     NPANPKFYNRDRFILSNGHASMLLYSLLHLTGYNLGIEDLKNFRQLHSKTPGHPEYGY
                     TDGVETTTGPLGQGIANAVGMALAEKILAAEFNKDGLNIVDHYTYVFMGDGCLMEGVS
                     HEACSLAGTLGLGKLIVLYDDNNISIDGKVDGWFTENIPQRFESYGWHVVPNVNGHDT
                     AAIQAAIEAARAETGKPSIICCKTLIGKGSANKEGSHKTHGAPLGADEIEATRKHLGW
                     TYPAFEIPQEIYDAWNAKEKGAKLEAEWDKLFAQYQAKYPAEAAEFVRRMDKKLPENF
                     DEYVQTALKEVCAKAETIATRKASQNSIEILAKELPELVGGSADLTPSNLTDWSNSVS
                     VTRDKGGNYIHYGVREFGMGAIMNGLALHGGVKPFGATFLMFSEYERNALRMAALMKI
                     NPVFVFTHDSIGLGEDGPTHQPIEQTATLRLIPNMDVWRPCDTAESLVAWAEAVKAAD
                     HPSCLIFSRQNLKFQARSEQQLDDIKRGGYIISEAQGNAQAVIIATGSEVELALEAQK
                     ALAAQNIAVRVVSMPSTNVFDRQDAAYQAAVLPESLPRIAVEAGHADGWYKYVGLNGA
                     VVGINRFGESAPADLLFKAFGFTVDNVVDTVKSVL"
     gene            6258..7646
                     /gene="fumC"
                     /locus_tag="ACFM6C_001237"
     CDS             6258..7646
                     /gene="fumC"
                     /locus_tag="ACFM6C_001237"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045239 - tricarboxylic acid cycle
                     heteromeric enzyme complex [Evidence IEA];
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006106 - fumarate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HFC6158692.1"
                     /translation="MSTRTEHDTMGNVEVPSEAYWGAQTQRSRNNFKIGGETLPQPLI
                     YALALVKKAAAATNVSLGRIKPEQADLITQAADDVLNGRLDGQFPLVVWQTGSGTQSN
                     MNMNEVLANRANEIAGTGLAAYQPVHPNDHVNHAQSTNDAFPTAIHVAAAIEINRHLI
                     PAVKALRDTLDKKAQAFAPIVKIGRTHLQDATPLTLGQEFSGYVSQLDHGLGRLNDAL
                     KDLYELALGGTAVGTGLNSHPEYAEKAAAKLAELSGLPFVSAPNKFEALGGRDAAVAA
                     SGALKTLAASLNKIANDIRWLASGPRCGLGEIKIPENEPGSSIMPGKVNPTQCEAMTM
                     VCCQVFGNDVTIGMAGASGNFELNVYMPVIAYNLLQSIRLLGDACNSFNEHCAVGIEP
                     VPEKIDYFLHHSLMLVTALNRKIGYENAAKVAKTAYKNNKSLRETAVELGLLTGEEFD
                     ELVVPADMVHPR"
     gene            complement(7711..8634)
                     /locus_tag="ACFM6C_001238"
     CDS             complement(7711..8634)
                     /locus_tag="ACFM6C_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HFC6158693.1"
                     /translation="MENQRPLLGFALALLAAMTWGTLPIAVRQVLKFVDAPTLVWVRF
                     TVAAAVLFVLLALGGRLPKRRDFSWCSFRLLLLGVAGISANFVLIAQGLHYISPTTTQ
                     VLWQISPFTMIVVGVLVFKDRMTAAQKIGLVLLLAGLLMFFNDKFGELSGLGAYAKGV
                     LLCAAGSMAWVCYAVAQKLLSAQFGPQQILLLIYAASAAVFLPFAEPAHIGSLDGTLA
                     WVCFAYCCLNTLIGYGSFGEALKHWEASKVSAVTTLLPVFTVIFSLLGHYVMPDTFAA
                     PDMNGLGYAGALVVVGGAVTAAVGDRLFKRR"
BASE COUNT         2203 a         2539 c         2170 g         1890 t
ORIGIN      
        1 attttctctc ccgattgaaa caggcgtaac agaatatgcc cgaagctccg gctgctttct
       61 tgtttaccgc cgcgatattt agagtataat accaaatttg agcaatggtt ctaaaacagt
      121 tagaaccatt tttcatgagc ctgactgatt cgtacactcg gagaaactga tgcagaatat
      181 ttttgaccct ttggttattc gtggaaaatc ccttaccccc atcgtgcaag gcggtatggg
      241 ggtcggtgtt tccgcatcgg gtttgtccag cgcggtggca cgtgaaaacg gtatcggaac
      301 gattgccagt gtggatttgc gccaccttca cgaagaccta ctcgccgaat cccaaatcaa
      361 tccgagtgaa gagaaatata cgtctttgaa ctgtaccgca ttggacaggg aaatccaaaa
      421 agccaaaagt gcttcagagg gaaaagggct gattgcggtc aacgtgatga aggcggtcaa
      481 agaccacgcc gcatatgtcc gccaggcttg cgaatcaggg gcggatgcgg tcgtgatggg
      541 cgcaggcctg cctttggacc tgccggaaat gaccgagggc tatcataaag atgtcgcgct
      601 gctgccgatt ctgtccgaat cgcgcggtat taatatcgtc ttgaaacgtt ggatgaaaaa
      661 aggcatattg cccgatgcga ttgtagtcga acatcctgcc cacgcggccg ggcatttggg
      721 cgcgtcaacc gtcgaaggcg taaacgatgc taaattcgac ttcaaacgcg tgattgagga
      781 aacgtttgaa gttttcaaaa gtttagggct ggaaagcgaa aaaatcccgc ttattttggc
      841 aggcggtatg gcaaattttg aaaaagtcaa aaccgcccta aagaactggg gagcatccgc
      901 cgttcaaatc ggtacggctt ttgccgttac cgaagaagga gatgcacacc ttaacttcaa
      961 aaaaacgctc gccggtgcgg aaactgaaaa agtagttgaa tttatgtctg ttgccggttt
     1021 gccggcgcgc ggcgtacgta ccaaattcct agacagctat atcaggcgcg aaggcaaact
     1081 tcaggcaaac gccaaagccg acccgcgccg ctgcacccaa ggattaaact gcctgaccag
     1141 ctgcggcctg cgcgacgggc tttccaaagc cgggcaattc tgtattgata tccagcttgc
     1201 tgccgcattc cgtggagaag tggataaagg cctgttcttc agaggtaaag acccgctgcc
     1261 cttcggcaat gccatccgca ccgtccgcga gacgatacaa tatctgctga cggggagcga
     1321 acctgttgca acgctcggac gctgacatca ggtaggattt gatttgcaaa caaaatgccg
     1381 tctgaagggc cttcagacgg cgtttttcag gctgcgttct ggaatagtgt taaaaaataa
     1441 acgggatgag ctgcatttat tttcgtccga caaatcaaac catcacgccg aatgatcaaa
     1501 taatgcctgc acggcgttgc atctggcaaa tcaatgcaat gaaaacacgg cttttttatt
     1561 tgctttcagt attattgaaa agtttgtcca tcggggtcaa atcgaccgca ttgccttggc
     1621 tggtaatcca tttgttctcg acgcgccaca cgcctgccac gtcctccacg cgcacatacc
     1681 agtggttggt cggcgaaagg gttttgaaca ccgcctcata ttccgccctg ccgttctgcg
     1741 cgctgccgac gggcttgagg gcgacagttt ggtcgtccgc cttgcgggtc gggtgcatca
     1801 gcagcaggtt caaaggctgt ttgccgtcaa actcgccgcc gacaaacact tttgccgcat
     1861 tcatatcggg ggaaatgaga acctgcaccc cgatatgccg tctgacggct tcttcatccc
     1921 gatgaagctg gatgtcgata tgtttgccgt ctttataata atcgtccgta accaaatctg
     1981 tcgcgtgctg ctgcgcgaca aaaaacatag cgacgctggc gatgacgaca aaaatcggcc
     2041 ccgccatcaa gatccacggc cagacgtgtt tgtaccaagg tttgattgga gtgttttgag
     2101 acacggttat tctccgataa aggttgcatc ttcttccaag acgaccggct tgccgtcggg
     2161 cgcgccgctt tcgcggtatt ggaaggtaaa ttcgataggg tggctgcctt tgtccgcgta
     2221 ttccggaatg gtggacactt ggacgggaag ggttaccgtt tcgcgcgggg caaccttgat
     2281 accgccttcg ggcagcccgg tcagggcgat ttcgtcaaag cctttgacac ttgcggtaat
     2341 gagctgttct ttttcacttt tgttgatgat acgcaggctg tatgcgtttt ccagccagcc
     2401 tttggcgttt tcgcgcacca gtacgccacg gtctttcaaa atatcgacct cgaccatttt
     2461 gcgcgtggac aaaccgacca aaaaggcggc gataaccact gccaacaccg cgccgtaacc
     2521 tgccacgcgc ggtctgagca gccgtttttt aatgtctttt tcagaatatt cgtgttccaa
     2581 cgcgctttcg gtcgtataac ggattaatcc gcgcggatag cccattttgt ccataatctc
     2641 atcacacgcg tcgatacagg cggcgcagcc gatacattgg tactgcagac cgttgcggat
     2701 gtcgatgccg acagggcaga cttggacgca catcgcacag ttgatgcagt cgcccaaacc
     2761 cgcctcttcc ttattgaccg ttttcttgcg cgcgccgcgc ggttcgccgc gttccgcgtc
     2821 ataagaaaca atcagcgtgt ccttgtcgaa catcgcgctt tggaaacgtg catacggaca
     2881 catatgcagg catacttttt cgcgcataat gtgggcgaag aagaaggtca taaagccgta
     2941 aaacgctgtg gcaaacatcg cgccgccgcc tgctgctcca gtgaataaat cgggaacgaa
     3001 ctggcggata gggacaaacc agcctgcaaa cgtgatgccc gtccacgcgc agacaaggaa
     3061 aatcaacagg tatttggtgg ctttgatgcg gattttagtg aaattccacg gcgatttttc
     3121 cagtttcagc cgtttgtttc tatcgccttc gaccaggttg tcgatccaca gcataatttc
     3181 ggtgtaaacc gtttgcgggc aggaatagcc gcaccacagt cgcccggcaa tcgtcgtcca
     3241 ccaaaacagc ccgaaggcgc aaatcatcag cagcaaggca aggtaaatca aatcgcccac
     3301 ccccaacgac aatccgaaaa tgaagaaatg ccgttcgggg atattgaaaa cgacagcctg
     3361 cctgccgctc cagttgaacc acggaatgac gtaaaacaca aactgcgtcg ccaatacggc
     3421 ggcgatacgc agtttggcga accgtccttc cgcctttttc ggatggatgc gttcgccttc
     3481 gggatggatt tgaatcacgc tggctcgcgg atcgaacgtt ttttttgctt tcggcgcggc
     3541 ttttgtttgt tcggacgtgc cgattccgga tgccggactg ccggcttggt tttccgtggt
     3601 cattctgcat tccttagatt tttgattgat ggtttgccct ttaccgccgc cgtttgcttt
     3661 tcagacgtca tttttcttgt tttttaaggc gttgtgtttc aagttttgag aaaatccgtt
     3721 tttcccaaaa tatatttccg ctattgtaca actttatgcg ccgtccggat gtatggggcg
     3781 gatacatttc ccatccgcat caaaacgcct ggattttacc ttaccgcccg aacaaaatcc
     3841 gaatacggtt aaaaaaaaag actaaaaaaa aaaccgacac ccccatatcg gcagaaccga
     3901 cggcgcaagc tcataaacaa acgctatcga caatccggca cacaatctat aactttttat
     3961 ttcaaaagga ataatggcag gcttcgcccg caaatcgaaa atccttcccc accggtctcc
     4021 tgccgccgcc ttcccccgcg tccgcccttt tcttgaaagc ataagcgaat cgggcgataa
     4081 tcaacgcctt ccgattatcc actcatccga aacaccagca aggaaaatac aaaatgtctc
     4141 aactggcaaa cgcaatccgc ttcctctcgg cagatgccgt tcaaaaagcc aattccggcc
     4201 accccggcgc gcctatgggt atggcggaaa tggcggaaac attgtggacg aaattcctca
     4261 atcacaaccc cgccaacccc aaattctata accgcgaccg cttcatcctc tccaacggcc
     4321 acgcgtctat gctgttgtac agcctgctgc acctgaccgg ctacaatctg ggcattgaag
     4381 acctgaaaaa cttccgccag ctgcacagca aaacccccgg ccaccccgaa tacggctaca
     4441 ccgacggcgt ggaaaccacg accggcccgt tggggcaagg gattgccaac gcggtgggta
     4501 tggcattggc agaaaaaatc cttgccgccg aatttaataa agacggtttg aacatcgtcg
     4561 atcattacac ctacgtcttt atgggcgacg gctgtctgat ggaaggcgta tcgcacgaag
     4621 cctgttcgct cgccggcacc ttgggcttgg gcaaactgat tgttttgtat gatgacaaca
     4681 atatttccat tgatggtaaa gtggacggct ggtttaccga aaacatcccg caacgctttg
     4741 aaagctacgg ctggcacgtc gttcctaacg taaacggtca tgacaccgcc gccattcaag
     4801 ccgccatcga agccgcacgt gccgaaaccg gcaaaccgtc catcatctgc tgtaaaacct
     4861 taatcggcaa aggcagtgcc aataaagaag gcagccacaa aacccacggc gcacctttgg
     4921 gcgcggacga aatcgaagcc acgcgcaaac atttgggctg gacttaccct gcctttgaaa
     4981 tcccgcaaga aatttacgat gcgtggaatg ccaaagaaaa aggcgcgaaa ctggaagccg
     5041 aatgggacaa actgttcgcg caatatcaag ccaaatatcc tgccgaagcc gcagaatttg
     5101 tgcgccgtat ggataaaaaa ctgccggaaa actttgacga gtacgttcag acggcattga
     5161 aagaagtgtg cgccaaagcc gaaaccatcg ctacccgcaa agccagccaa aacagcatcg
     5221 aaatcttggc aaaagagctg cccgaactgg tgggcggttc tgccgacctg accccgtcca
     5281 acctgaccga ctggtcaaac agcgtttccg ttacccgcga caaaggcggc aactacatcc
     5341 actacggcgt gcgcgagttc ggtatgggcg cgattatgaa cggtttggca ttgcacggcg
     5401 gcgtaaaacc cttcggcgcg actttcctga tgttcagcga atacgagcgc aacgccctgc
     5461 gtatggcggc actgatgaaa atcaaccctg tatttgtgtt cacccacgat tccatcggtt
     5521 tgggcgaaga cggcccgacc caccagccga ttgagcaaac cgccaccctg cgcctgattc
     5581 cgaatatgga cgtatggcgg ccgtgcgaca ccgccgaatc cttggtcgct tgggcagaag
     5641 ccgtcaaagc cgccgatcac ccgtcctgcc tgattttcag ccgtcaaaac ctgaaattcc
     5701 aagcgcgcag cgaacaacaa ctggacgaca tcaaacgcgg cggctacatc atcagcgaag
     5761 cccaaggcaa cgcccaagcc gtcatcattg ccaccggctc agaagtcgag ctggctttgg
     5821 aagcgcaaaa agccctcgcc gcgcaaaaca tcgccgtgcg cgtcgtttcc atgccgtcca
     5881 ccaacgtatt cgaccgccaa gacgccgcct atcaagccgc cgtcctgccc gaaagcctgc
     5941 cgcgcatcgc cgtagaagcc ggacacgccg acggctggta caaatacgtc ggtctgaacg
     6001 gcgcagtcgt cggcatcaac cgcttcggcg aatccgcccc tgccgattta ctcttcaaag
     6061 cattcggctt taccgtggac aatgtggtcg atacagtgaa atccgtgctg taaaccgcag
     6121 ccgccgcatc aaatgccgtc tgaacgcttt tcagacggca ttttttttgc cctccagcct
     6181 taatgcttcc tcattccgcc aatctccatt ataatatttg cgaatcactc ttattcacat
     6241 ttcaaaagga gaaacgcatg agcacccgta ccgaacacga caccatgggc aatgtcgaag
     6301 tcccgtccga agcctattgg ggcgcgcaga cccagcgcag ccgcaacaat ttcaaaatcg
     6361 gcggcgaaac cctgccgcag ccgctgattt atgctttggc gctggtgaaa aaagccgccg
     6421 ccgcgaccaa tgtttccctc ggcaggatta agccggaaca ggcggatttg attacgcagg
     6481 cggcggatga tgtgttgaac ggcaggcttg acggacagtt tcctttagtg gtttggcaga
     6541 ccggctccgg cacgcagtcc aatatgaaca tgaacgaagt gctggcaaac cgcgccaacg
     6601 aaatcgccgg tacgggtttg gcggcttatc agcccgtcca tcccaacgac catgtgaacc
     6661 acgcgcaatc gaccaacgac gcattcccga ccgctatcca cgttgccgcc gcgattgaaa
     6721 tcaaccgcca cctcatcccc gccgtaaaag ccctgcgcga taccttggac aaaaaagccc
     6781 aagctttcgc ccccattgtt aaaatcggcc gcacccactt gcaagacgcg acgccgctga
     6841 ctttgggaca ggaattttcc ggctacgttt cccagcttga tcacggctta ggccgtctga
     6901 acgatgcgct taaagacttg tatgaacttg ctttgggcgg tacggcggtc ggcacgggtt
     6961 tgaacagcca tcccgaatac gccgaaaaag ccgccgccaa actcgccgaa ctgtccggct
     7021 tgccgtttgt cagcgcgccg aacaaatttg aagccttagg cggacgcgat gccgccgttg
     7081 ccgcttcggg cgcattgaaa acgctggcgg caagcctgaa caaaatcgcc aacgacatcc
     7141 gctggctggc aagcggcccg cgttgcggtt tgggcgaaat caaaatcccc gaaaacgagc
     7201 cgggttcgtc catcatgccg ggcaaagtca acccgaccca atgcgaagca atgacgatgg
     7261 tgtgctgcca agtgttcggc aacgacgtta ccatcggtat ggcgggcgcg tcgggcaatt
     7321 tcgagctgaa cgtctatatg cccgttatcg cctacaacct cttgcaatcc atccgcctgt
     7381 tgggcgacgc gtgcaacagc ttcaacgaac actgcgccgt cggcatcgaa cccgtaccgg
     7441 aaaaaatcga ctatttcctg caccattccc tgatgctcgt taccgcgttg aaccgcaaaa
     7501 tcggttacga aaacgccgcc aaagtcgcca aaaccgccta caaaaacaac aaatcgttgc
     7561 gcgaaaccgc cgttgagttg ggcttgctga cgggcgaaga atttgacgaa ctggtcgttc
     7621 ctgccgatat ggttcatccg cgctaatctt tccctcaaat aaaatgccgt ctgaaacctc
     7681 gttcggacgg cattttccgt tgcctgcaaa ctagcggcgt ttgaacagcc tgtcccccac
     7741 cgccgctgta accgcacccc cgaccacgac cagtgcgccg gcataaccca aaccgttcat
     7801 atccggcgcg gcaaaagtat caggcatcac ataatgcccg agcaaagaaa atattacggt
     7861 aaacacgggg agcaaggttg ttaccgcgct gactttggaa gcctcccaat gtttcaacgc
     7921 ctcgccgaac gagccgtaac cgattaacgt attcaagcag caatacgcaa aacaaaccca
     7981 cgccaacgta ccgtccaaac ttccgatgtg tgccggttcg gcaaacggca ggaacacggc
     8041 ggcacttgcc gcataaatca acagcagaat ctgttgcggc ccgaattgcg ccgacagcag
     8101 cttttgcgcc acggcataac acacccatgc catactgcct gccgcacaca gcaacacgcc
     8161 cttcgcatac gcgcccaaac ccgacaactc gccgaattta tcgttaaaaa acataagcaa
     8221 accggcaagc agcaaaacca agccgatttt ctgagcggca gtcatccggt ctttaaacac
     8281 caacacaccg acaacaatca tcgtaaacgg cgaaatctgc cacaaaacct gcgtcgtggt
     8341 cggcgaaata taatgcagcc cttgggcaat caacacaaag tttgccgaaa tgcccgccac
     8401 gccgagcagc agcagcctga atgagcacca agaaaaatcc cgccgcttcg gcagccgccc
     8461 gcccaatgcc agcaaaacaa acaataccgc cgccgccacg gtaaaacgca cccacaccag
     8521 cgtcggcgca tcgacaaact tcaatacctg ccgcacggca atcggcagcg ttccccacgt
     8581 catcgccgcc aaaagtgcca acgcgaagcc taggagcggc ctttggtttt ccatcctgat
     8641 tttcctattt tttaaacaac cgtattgccg gacgatgccg gtttgccgca tcgggcaatg
     8701 atggttcaag cgtttggcgt ttgattccaa ccctttgatt tcaaacaaac cggctgaagc
     8761 ccggctattg cttcgcgcta tttgaaaaca ccgcctgaat tt
//
LOCUS       DAXHPV010000076         8740 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.076, whole genome shotgun sequence.
ACCESSION   DAXHPV010000076 DAXHPV010000000
VERSION     DAXHPV010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8740)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8740)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8740
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.076"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            174..647
                     /locus_tag="ACFM6C_001239"
     CDS             174..647
                     /locus_tag="ACFM6C_001239"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008753 - NADPH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HFC6158694.1"
                     /translation="MTMQVFLTIPGYDVEAEIEKFVWMDAVIWQMPSWWMHEPWTVKK
                     YIDEVLTAGHGKLYQSDGRHSVNPTEGYGTGGLLQGKKHMLSLTWNAPIEAFTREGDF
                     FEGKGVDVLYMHFHKANEFLGMTRLPTFLCNDVVKNPQVEKYLADYQAHLEKVFG"
     gene            complement(856..2241)
                     /gene="pntB"
                     /locus_tag="ACFM6C_001240"
     CDS             complement(856..2241)
                     /gene="pntB"
                     /locus_tag="ACFM6C_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008750 - proton-translocating NAD(P)+
                     transhydrogenase activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HFC6158695.1"
                     /translation="MSSGLVTAAYIVAAILFIFSLAGLSKQETAKQGCYSGIAGMAVA
                     LFVTVFSDNTHGLGWIIIAMLIGAAIGIYKAKKVEMTEMPELIALLHSFVGLAAVLVG
                     FNSYIAPGNVSHDMHTIHLVEVYLGIFIGAVTFTGSLVAFGKLNGKISSSPLQLPAKH
                     KLNALALGVSFVLLLVFVGIDGSGFILLIMTLIALAFGWHLVASIGGADMPVVVSMLN
                     SYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFVSVIAGGFGSDSG
                     TSSSGSQEIGEYREVKAADVAEMLKSANSVIITPGYGMAVAQAQYPVAEITELLHKNG
                     TEVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFPETDVVLVIGANDTVN
                     PAAQTDPNSPIAGMPVLEVWKAKEVVVFKRSMNTGYAGVQNPLFFNENSVMCFGDAKK
                     TVDDILSELKK"
     gene            complement(2307..2690)
                     /locus_tag="ACFM6C_001241"
     CDS             complement(2307..2690)
                     /locus_tag="ACFM6C_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HFC6158696.1"
                     /translation="MTFAYWCILIACLLPLFCAAYAKKTGGFRFSDNHHPRDFLARTQ
                     GAAARAHAAQQNSFEAFAPFAAAVLTAHATGNAGQATVNTLAGLFILFRLAFIWCYIA
                     DKAALRSLMWAGGFACTVGLFVAAA"
     gene            complement(2694..4235)
                     /locus_tag="ACFM6C_001242"
     CDS             complement(2694..4235)
                     /locus_tag="ACFM6C_001242"
                     /EC_number="7.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HFC6158697.1"
                     /translation="MKIGIPRESLSGETRVACTPATVALLGKLGFETVVESGAGLAAS
                     LDDAAYQTAGATVADKATVWACPLIYKVNAPSEDELPLLKEGQTIVSFLWPRQNEALV
                     EALRAKKVNALAMDMVPRISRAQALDALSSMANISGYRAVIEAANAFGRFFTGQITAA
                     GKVPPAQVLVIGAGVAGLAAIGTANSLGAVVRAFDTRLEVAEQIESMGGKFLKLDFPQ
                     ESGGSDDGYAKVMSDEFIAAEMKLFAEQAKEVDIIITTAAIPGKPAPKLITKEMVESM
                     KSGSVIVDLAAATGGNCELTRPGELSVTGNGVKIIGYTDMANRLAGQSSQLYATNLVN
                     LTKLLSPNKDGEITLDFEDVIIRNMTVTHDGEITFPPPPIQVSAQPQQTPSEKAAPAA
                     KPEPKPVSLWKKLAPAVIAAVLVLWVGAVAPAAFLNHFIVFVLACVIGYYVVWNVSHS
                     LHTPLMSVTNAISGIIVVGALLQISQGNGFVTLLAFIAILIASINIFGGFFVTRRMLN
                     MFKKG"
     gene            4525..5358
                     /gene="serB"
                     /locus_tag="ACFM6C_001243"
     CDS             4525..5358
                     /gene="serB"
                     /locus_tag="ACFM6C_001243"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036424 - L-phosphoserine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HFC6158698.1"
                     /translation="MPHALVLQFPSAEALPSDFPSRLPEPDCADEKRMRFIVEEGFSL
                     SGADAALLGSRQIDHAVLPDMNFDELGLIVSDMDSTLITIECVDEIAEGVGLKNKVAE
                     ITERSMRGELDFEQSLRSRVALLAGLDEQILADVYENVLKLSPSAEFLLDECKRHNVK
                     FLLVSGGFTFFTERLQQRLGFEYQHANILEIENGRLTGRLKGRIIDAQAKADLLREYR
                     SRLGLQPHQVLAMGDGANDIPMLKEAGVGVAYRAKPKAQAAADACINFGGLERVRGLF
                     R"
     gene            5422..6645
                     /locus_tag="ACFM6C_001244"
     CDS             5422..6645
                     /locus_tag="ACFM6C_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HFC6158699.1"
                     /translation="MGRRKLWFALAAAGVIGGLVGIVLTELMHFIQHTAYGYGADGVY
                     TSFREGVAQASGMRRVAVLTLCGAVAGVGWCLLKALGKPQIEIKAALKQPLQGLPFLT
                     TVFHVLLQIITVGLGSPLGREVAPREMTAAFAFAGGRRLGLDEDEMRLLIACASGAGL
                     AAVYNVPLASTLFILEAMLGVWTQQAVAAALLTSVIATAVARIGLGDVQQYHPANLAV
                     NTSLLWFSAVIGPILGAAAVFFQRTAQKFPFIKRDNIKIIPLAVCMFVLIGAIAVWFP
                     EILGNGKAGNQLTFSGLTGWQYALELAAVKWLVVLMALAAGAYGGLITPSMMLGSTIS
                     FAAAAAWNSVFPAMSSESAAVVGAAVFLGVSLKMPLTAIVFVLELTYAPLSLLLPLCI
                     GMAGALGTSGKMGFK"
     gene            6806..8386
                     /gene="purH"
                     /locus_tag="ACFM6C_001245"
     CDS             6806..8386
                     /gene="purH"
                     /locus_tag="ACFM6C_001245"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HFC6158700.1"
                     /translation="MSVIKRALISLSDKAGAVEFAQTLHKLGVEILSTGGTAKLLADA
                     GVPVIEVADYTGFPEMLDGRVKTLHPKIHGGILGRRDLGEHVAKMEEHGIGNIDLVCV
                     NLYPFAATIAKPNCTLEDAIENIDIGGPTMVRSAAKNWKHVAIVTDTADFPAIAAELE
                     ANNGALSDKTRFNLSRKAFSHTAQYDGMISNYLTSLSDDVLSGEPQIGEFPSQFNQSW
                     IKVQDMRYGENPHQRAAFYRDVYPAAGSLSAYKQLQGKELSYNNIADADAAWEAVKSF
                     DAPACVIVKHANPCGVAVAADTLTAYKLAYATDTTSAFGGIIAFNREVDGETVKQITD
                     NQFMEVLMAPKFTAEALEIAAAKKNVRVLEVPLEAGANRFELKRVGGGLLVQTPDIHR
                     ISRADLKVVSKRQPTEQEWNDLLFVWNVAKYVKSNAIVFGKGGQTYGIGAGQMSRVDS
                     TRIAARKAQDAGLDLNGACAASDAFFPFRDGVDVIAEQGIKAIIHPAGSMRDQEVFDA
                     ADEHGIAMVVTDVRHFRH"
BASE COUNT         1956 a         2347 c         2475 g         1962 t
ORIGIN      
        1 cgcctgcgcg ggaatgacga atccatccgt acggaaacct gcaccacgtc attcctacga
       61 acctacattc cgtcattccc acgaaagtgg gaatccagga cgaaaaatct ccagaaaccg
      121 ttttacccga taagtttccg caccgacagg tctggattcc cgcctgcacg ggaatgacga
      181 tgcaggtatt tctgacgatt cccggctatg atgttgaggc agaaatcgaa aaattcgttt
      241 ggatggatgc tgtgatttgg cagatgccga gctggtggat gcacgagcct tggacagtga
      301 aaaaatacat agacgaagta ttaaccgctg gacacggcaa actctaccaa agcgacggca
      361 gacacagcgt caatccgact gagggctacg gcacaggcgg cttgttgcaa ggcaaaaaac
      421 atatgctttc actgacttgg aatgcgccga ttgaggcgtt tacccgcgaa ggcgatttct
      481 ttgaaggcaa aggcgttgat gttttgtata tgcacttcca caaagccaac gagtttttgg
      541 gtatgacccg cctgccgaca ttcttatgta acgatgtggt taaaaatccg caagtggaaa
      601 aatacttggc agattatcag gcacacttgg aaaaagtgtt cggctaatta aaaatccatc
      661 ttcaacacgg agatggattt tgtttgtttc gttgattttg tgtcagtttc agatgtaggt
      721 gcttattcgg acgggccgtc tgaaaatgtt tgccccaatg caaaaaaaat cactgcaaac
      781 cttcataaac ggggtttgca gtgatttttt caaatcaaac agattgaaaa cctgcgccga
      841 attgttcaga cggcattatt ttttcagttc ggacagaatg tcatctacgg ttttcttcgc
      901 atctccgaaa cacattacgc tgttttcgtt gaagaacagc gggttttgta cacctgcgta
      961 gccggtattc atcgagcgtt tgaagacgac gacttctttt gccttccata cttccaacac
     1021 gggcataccc gcaatcgggc tgttcgggtc ggtttgggcg gcaggattga cggtatcgtt
     1081 cgcaccgatg accaagacca catcggtttc ggggaaatcg tcgttgattt cgtccatttc
     1141 caacacgatg tcgtagggga ctttggcttc ggcaagcagt acgttcatat gaccgggcag
     1201 gcggccggcg acggggtgga tgccgaagcg tacttctgtg ccgtttttat gcaaaagctc
     1261 ggtgatttcg gcaacggggt attgcgcctg tgcgactgcc atgccgtagc ccggggtgat
     1321 gatgacgctg tttgcgcttt tcagcatttc ggcaacatcg gcagctttga cttctcggta
     1381 ttcccctatc tcttggctgc cggaagatga tgtgccgctg tcgctgccga aaccgccggc
     1441 aattaccgag acaaacgagc ggttcatggc tttgcacata atgtaggaca gaatcgcgcc
     1501 gcttgagcca accagcgcgc cggtaacgat gagcaggtcg ttggagagca taaagcctgc
     1561 cgctgcggcc gcccagccgg agtaggagtt gagcatggac acgaccacgg gcatatctgc
     1621 gccgccgatg gaggcaacca agtgccagcc gaatgcgagg gcaatcaggg tcataatcag
     1681 caggatgaag ccgctgccgt caatgccgac gaatacgagc agcaacacaa acgatacgcc
     1741 aagtgccagt gcgttgagct tgtgtttggc gggcagttgc agcgggctgc tgctgatttt
     1801 gccgttgagc ttgccgaatg cgaccagcga gccggtaaag gttaccgcgc cgatgaaaat
     1861 gcccaaatag acttcgacca gatggatggt gtgcatatcg tgcgaaacgt tgcccggcgc
     1921 gatatagctg ttgaagccga ccaaaaccgc cgctaggccg acgaagctgt gcagcagggc
     1981 aatcagttcg ggcatttcgg tcatttccac ctttttggct ttgtagatgc cgattgccgc
     2041 gccgatgagc atggcgatga tgatccagcc cagtccgtgg gtattgtcgg aaaaaacagt
     2101 tacaaaaagg gcgaccgcca taccggcgat accggaatag cagccctgtt tggcggtttc
     2161 ctgtttggac agccccgcca gtgagaagat gaataaaatt gcggcaacga tatacgccgc
     2221 tgttacgagt cctgaagaca tggaaattct ccgattttcg atgatttgtt tttaatgccg
     2281 tctgaactgt tcagacggca tctgtttcaa gcagccgcga caaacagccc gacggtgcag
     2341 gcaaatccgc ccgcccacat cagcgagcgc aatgctgctt tgtctgcgat gtagcaccag
     2401 ataaaggcga ggcggaacag gatgaacagg ccggcaagcg tgttgacggt tgcttgtccg
     2461 gcattgccgg ttgcgtgtgc cgtcaaaacg gcggctgcaa atggtgcaaa tgcttcaaaa
     2521 ctgttttgct gcgcggcatg ggcacgggca gcggcacctt gggtacgcgc cagaaaatca
     2581 cggggatgat gattgtcgct gaagcggaat ccgccggttt ttttggcata cgctgcacaa
     2641 aaaagcggca ataagcaggc aatcaggatg caccaatagg cgaaagtcat ggcttaccct
     2701 ttcttaaaca tattcaacat gcggcgcgtt acgaagaagc cgccgaagat attgatgctg
     2761 gcaatcagga tggcgatgaa ggcaagcagg gtaacgaaac cgttgccttg gctgatttgc
     2821 agcagcgcgc cgacgacgat gatgccggag atggcgttgg ttaccgacat cagcggtgtg
     2881 tgcagcgagt ggctgacgtt ccaaacgacg tagtacccga tgacgcaggc gaggacgaac
     2941 acgataaagt ggttcaggaa tgctgcgggt gcgaccgcgc cgacccacag caccaatacg
     3001 gcggcgatga cggcgggcgc gagttttttc cacagggaaa caggtttcgg ctcgggcttg
     3061 gcggcaggcg cggctttttc agacggcgtt tgctgcggct gggcggaaac ttgaatcggc
     3121 ggaggcggga aggtgatttc gccgtcgtgg gtaacggtca tgttgcggat aatcacgtct
     3181 tcgaagtcca acgtgatttc gccgtctttg ttcgggctta acagcttggt caggttgacc
     3241 aagttggtgg cgtaaagctg ggaagactgt ccggcaaggc ggtttgccat gtcggtgtag
     3301 ccgatgattt tcacgccgtt gccggttacg gacaattcgc ccgggcgggt gagttcgcag
     3361 ttgccgcccg tcgccgccgc caaatcgacg atgacggagc cggatttcat gctttccacc
     3421 atttctttgg taatcagctt gggcgcgggt ttgcccggaa tggcggcggt ggtgatgatg
     3481 atgtccactt ctttcgcctg ctcggcaaag agcttcatct cggctgcgat aaattcgtcg
     3541 ctcatcactt tggcgtagcc gtcgtcgctg ccgcccgatt cttgtgggaa gtcgagtttc
     3601 aggaacttgc cgcccatcga ttcgatttgt tccgccactt ccaagcgggt atcgaacgcg
     3661 cgtaccactg cgccgagcga gtttgccgta ccgatcgccg ccaaacctgc cacacctgca
     3721 ccaatcacca aaacctgcgc gggcggcact ttgccggcgg cggtaatttg accggtgaag
     3781 aaacggccga aggcgttggc ggcttcaatt acggcgcggt agccgctgat gtttgccatc
     3841 gaagacaaag cgtccaaagc ctgcgcgcgc gaaatacggg gcaccatgtc cattgccagc
     3901 gcgttgactt tcttggcgcg caaggcttcg accaaagcct cgttttggcg cggccacagg
     3961 aagctgacga tggtctgtcc ttctttgagc agcggcagct cgtcttcgga cggcgcgtta
     4021 accttataaa tcaaagggca tgcccaaacc gttgctttgt cggcaacggt cgcgcctgct
     4081 gtttggtaag cggcatcgtc caaacttgcc gccaaacctg caccgctttc gacaacggtt
     4141 tcaaagccca gtttgcccag cagggcaacg gtggcgggcg tgcaggcgac gcgggtttcg
     4201 ccggataatg actcacgtgg gataccgatt ttcatctctg aatccttttt cgggttgttt
     4261 atatgtatcg tgggttaaat ttaaatcgtg gcggggcgga gcaacgccgt accggtttaa
     4321 aaccgattca cttcaaatgt taatatattt tagataatcc ccttataacg aattttcatc
     4381 aggctggcaa tagttgcggc attttcccgt gttgtccgac acatactgcc gtttgcgttt
     4441 gaagtcattg tccgattgca gtccctcccg ccgtaacatt ctttgccgtt tcactatata
     4501 atccgcattt tttgagccgc cgttatgccg cacgccctcg tcctccaatt tccctccgcc
     4561 gaagccctgc cttccgactt cccctcccgc ctgcccgaac ctgattgcgc cgatgaaaag
     4621 cgtatgcgtt ttatcgttga agaagggttt tctttaagcg gggcggacgc ggcgttgctt
     4681 ggcagccgtc aaatcgacca cgccgtgttg ccagatatga attttgacga actcggttta
     4741 attgtcagcg atatggattc gacactgatt accatcgaat gcgtcgatga aattgcggaa
     4801 ggcgtgggtt taaaaaacaa agtagcggaa attaccgagc gttcgatgcg cggcgaactc
     4861 gatttcgaac agtctttacg cagccgcgtc gcgctgttgg cgggattgga cgaacagatt
     4921 ttggcggacg tttatgaaaa cgttttgaag ctctcgccca gtgcggaatt tttgttggac
     4981 gaatgcaaaa ggcacaatgt gaaattcctg ctggtgtccg gcgggttcac gttttttacc
     5041 gaaaggctgc aacaacgcct cggcttcgaa taccaacacg ccaatatttt ggaaattgaa
     5101 aacggcaggc tgaccggacg tttgaaaggc agaattatcg acgcgcaggc aaaggcggat
     5161 ttattgcgcg aataccgcag ccgcctcgga ttgcagccgc atcaggtgtt ggcgatgggc
     5221 gacggtgcga acgatattcc gatgctcaaa gaagcgggcg tgggcgtggc ttaccgcgcc
     5281 aaaccgaaag cgcaggcagc cgccgatgcc tgtatcaatt tcggcggttt ggagcgtgta
     5341 cgcggcctgt tcaggtaggc ggataggaaa cggatgccgt ctgaaaggtg ttcagacggc
     5401 atttgaacgg caggaacgac agtgggacgc agaaaacttt ggtttgccct ggcagcagcg
     5461 ggcgttatcg gcggtttggt cggcattgtg ctgacggaac tgatgcactt catacagcat
     5521 acggcatacg gttatggcgc ggacggcgtg tacacttcgt tccgcgaagg tgtggcacag
     5581 gcttccggta tgcggcgcgt tgccgtgctg acgctgtgcg gcgcggtcgc aggagtcggc
     5641 tggtgcttgc tgaaagcctt gggcaagccg caaatcgaaa tcaaagccgc cttgaagcag
     5701 ccgttgcagg ggctgccgtt tctgacgacg gtttttcatg ttctgctgca aatcataacg
     5761 gtcggactcg gttcgccgct cggacgggaa gtcgcgccgc gtgaaatgac tgccgcgttt
     5821 gcttttgccg gcggcaggcg gttgggtttg gatgaagacg aaatgcgcct cttgattgcc
     5881 tgtgcgtccg gcgcgggttt ggcagccgtg tataatgtgc cgctcgcctc cacacttttc
     5941 atcctcgaag ccatgctggg cgtgtggacg cagcaggcgg ttgccgccgc gttgctgact
     6001 tccgtcattg ccaccgccgt ggcgcgtatc ggcttaggcg acgtacagca gtatcatccc
     6061 gccaaccttg ccgtaaatac ttcattgctt tggttttccg ccgtcatcgg cccgatattg
     6121 ggcgcagccg ccgtcttttt ccagcgtacc gcccaaaagt tcccctttat caagcgcgac
     6181 aacatcaaaa ttattccctt ggcagtctgc atgtttgtgc tcatcggcgc gattgccgtg
     6241 tggtttcccg aaattttggg caacggcaaa gcaggcaacc aactgacttt tagtggtttg
     6301 accggttggc aatacgcttt ggaacttgca gccgtcaaat ggctggtcgt cttgatggcg
     6361 ctggcggcag gcgcatacgg cggcctgatt acgccgtcta tgatgctcgg cagcaccatt
     6421 tcttttgcag ccgccgccgc gtggaacagc gttttccccg caatgtcgtc tgaaagcgcg
     6481 gcagtcgtcg gagcggcggt gtttctcggc gtgtcgctca aaatgccgct gaccgccatt
     6541 gtgttcgtat tggaactgac ctacgcgccg ctgtccctgc tgctgccttt gtgcatcggc
     6601 atggcggggg cattgggaac atcgggaaaa atgggcttca aatgaatgcc gacaaatgcc
     6661 gtctgaaagg ttttcagacg gcatttcttt gtaaattgtc agcaatatct gcaaaaacct
     6721 actgccaaaa aactagaaat agcggataat accgccccga aaaagttccc ctttccccat
     6781 ccaactgtca gaaaaggaag ccccaatgtc cgtcatcaaa cgcgccctga tcagcctgtc
     6841 cgacaaggca ggcgcggtcg aatttgccca aactctgcac aagctcggtg tcgaaatcct
     6901 ctccaccggc ggcacggcga aactgcttgc cgatgcgggc gttcccgtga ttgaagttgc
     6961 cgactatacc ggcttccccg aaatgctcga tggccgcgtg aaaaccctgc atccgaaaat
     7021 ccacggcggc atcctcggtc gtcgcgattt gggcgaacac gtcgccaaga tggaagaaca
     7081 cggtatcggc aacatcgacc tcgtgtgcgt caacctttac cccttcgccg ccaccatcgc
     7141 caaaccaaac tgcacactgg aagacgcgat tgaaaacatc gacatcggcg gcccgactat
     7201 ggtgcgttct gccgcgaaaa actggaaaca cgtcgccatc gttaccgata ccgccgattt
     7261 ccctgccatc gccgccgaac tcgaagccaa caacggcgca ttgagcgaca aaacccgttt
     7321 caacctctca cgcaaagcat tcagccatac cgcccaatac gacggcatga tttccaacta
     7381 cctgacctcg ctttcagacg acgtcttgag cggagagccc caaatcggcg aattcccgag
     7441 ccagttcaac caaagctgga ttaaagtgca agatatgcgc tacggcgaga atccgcacca
     7501 acgcgccgcg ttctaccgcg atgtgtaccc cgccgcaggc agcctttccg cctacaaaca
     7561 gctccaaggt aaagaattgt cgtacaacaa catcgccgat gccgatgccg catgggaagc
     7621 cgtcaaatcc tttgacgcgc ccgcctgcgt gattgtgaag cacgccaatc cgtgcggcgt
     7681 cgccgttgca gccgatacct tgaccgccta caaactcgcc tacgccaccg acaccaccag
     7741 cgcgttcggc ggcatcatcg ccttcaaccg cgaagtggac ggcgaaaccg tcaaacagat
     7801 tacagacaac cagtttatgg aagtcctgat ggcgccgaag ttcaccgccg aagccctcga
     7861 aatcgccgcc gccaagaaaa acgtgcgcgt gttggaagtg cctttggaag caggcgcgaa
     7921 ccgctttgaa ctcaaacgcg tcggcggcgg attgttggta caaacgcccg acatccaccg
     7981 catcagccgc gccgatttga aagtcgtctc caaacgccaa ccgaccgaac aggaatggaa
     8041 cgatttgctg ttcgtttgga acgtcgcaaa atacgtcaaa tccaacgcca tcgtcttcgg
     8101 caaaggcggt caaacctacg gcatcggcgc aggccaaatg agccgcgtgg acagtacccg
     8161 catcgccgcc cgcaaagcgc aggacgcagg cttggactta aacggcgcat gtgccgcctc
     8221 tgatgctttc ttccccttcc gcgacggcgt ggacgtgatt gccgagcagg gcatcaaagc
     8281 catcatccat ccggcaggtt cgatgcgcga tcaggaagtc ttcgacgcag cggacgaaca
     8341 cggcatcgcc atggtcgtaa ccgacgtgcg ccacttccgc cattaacgca gatgaacaag
     8401 gcaatgccgt ctgaagggct ttcagacggc attttgcgct attttgtgaa ggtagggatg
     8461 acggttcggg tattcctgac agggtggatt ttcaaggtgt tgtatagggt gtaggaggat
     8521 tcgtaaaagg tgggatgcag ggtgtgcttc agcccgctgc atcaaaaatt tttggagaat
     8581 cggcgggagt cggcggtttt ggtttcggcg gggacggtgg aaatgggtaa cattgacgga
     8641 atcgacggaa gcggtgggct tcagcccacc gcttgtatat tggaatcacc gtatcatagc
     8701 gccacccgcg cccacccaag gcacacaacc gttgcgtagc
//
LOCUS       DAXHPV010000077         8728 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.077, whole genome shotgun sequence.
ACCESSION   DAXHPV010000077 DAXHPV010000000
VERSION     DAXHPV010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8728)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8728)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8728
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.077"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(305..1201)
                     /gene="argB"
                     /locus_tag="ACFM6C_001246"
     CDS             complement(305..1201)
                     /gene="argB"
                     /locus_tag="ACFM6C_001246"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HFC6158701.1"
                     /translation="MESENIISAADKARILAEALPYIRRFSGSVAVIKYGGNAMTEPA
                     LKAGFARDVVLLKLVGIHPVIVHGGGPQINAMLEKVGKKGEFVQGMRVTDKEAMDIVE
                     MVLGGHVNKEIVSMINTYGGHAVGVSGRDDHFIKAKKLLIDTPEQNGVDIGQVGTVES
                     IDTGLVKGLIERGCIPVVAPVGVGEKGEAFNINADLVAGKLAEELNAEKLLMMTNIAG
                     VMDKTGNLLTKLTPKRIDELIADGTLYGGMLPKIASAVEAAVNGVKATHIIDGRLPNA
                     LLLEIFTDAGIGSMILGGGEDA"
     gene            1371..2501
                     /locus_tag="ACFM6C_001247"
     CDS             1371..2501
                     /locus_tag="ACFM6C_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M14-type cytosolic carboxypeptidase"
                     /protein_id="HFC6158702.1"
                     /translation="MIKISTRFDAGSVVVKDLTDPSNIRLALRPDNASDFAQWFYFRL
                     QGAAYQNCIMHFENAAEAAYPKGWEGYQACASYDRRNWFRVPTSYENGVLTVNHTPLS
                     NSVYYAYFEPYSEEQHLNLLGDAQGSGLCRIDDLGSTVQGRDINLLTIGNQVESDLKI
                     WITARQHPGETMAEWFVEGLLGRLLDPQDPTARTLLDRATFYIVPNMNPDGSALGNLR
                     TNAAGANLNREWENPTLEKSPEVFFVREKMLETGVDLFLDIHGDEGLPFVFVAGTEGV
                     PNYNPRISALETQFKTALLNASPDFQDEYGYEKDAPGQANMTLATNWVGNRFNCLAYT
                     LEMPFKDNANLPDDDFGWNGQRSLRLGEAALSAILNVIGDLR"
     gene            2572..3423
                     /gene="lgt"
                     /locus_tag="ACFM6C_001248"
     CDS             2572..3423
                     /gene="lgt"
                     /locus_tag="ACFM6C_001248"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HFC6158703.1"
                     /translation="MIIHPQFDPALISIGPLAVRWYALSYILGFILFTFLGRRRIAQG
                     LSVFTKESLDDFLTWGILGVILGGRLGYVLFYKFSDYLAHPLDIFKVWEGGMSFHGGF
                     LGVVIAIWLFGRKHGIGFLKLMDTVAPLVPLGLASGRIGNFINGELWGRVTDINAFWA
                     MGFPQARYEDAEAAAHNPLWAEWLQQYGMLPRHPSQLYQFALEGICLFAVVWLFSKKQ
                     RPTGQVASLFLGGYGIFRFIAEFARQPDDYLGLLTLGLSMGQWLSVPMIVLGIVGFVR
                     FGMKKQH"
     gene            complement(3506..4168)
                     /locus_tag="ACFM6C_001249"
     CDS             complement(3506..4168)
                     /locus_tag="ACFM6C_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein"
                     /protein_id="HFC6158704.1"
                     /translation="MDSRKFTEASKRRLSELLDAKSEQGNTMRCDEVQGFMTALLSGP
                     DKLTPLDWLPEVLGDESQFTAAERSEIERLVLAMAMETTAAMSDKKLPDLWLYENEDG
                     GSDFYTWCNAYLYGLDIVPTDWFEAVDDEAFEELFYPIMALGGIYDEEDNGAIRLQFT
                     EGELAELESELPYALADIYRYWQAVINKPQTVRREGEKTGRNDPCPCGSGRKYKACCG
                     KN"
     gene            complement(4263..6056)
                     /locus_tag="ACFM6C_001250"
     CDS             complement(4263..6056)
                     /locus_tag="ACFM6C_001250"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HFC6158705.1"
                     /translation="MQLDIDRLVAYFGGVNALAEALKQHDPENAATTAAIYKWRTRGS
                     LPLAQLQKLTALAESQGRPLDLNAFLQKNESLERTEMTQANRVIIFDTTLRDGEQSPG
                     AAMTKEEKIRVARQLEKLGVDIIEAGFAAASPGDFEAVNAIAKTITKSTVCSLSRAIE
                     RDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDV
                     EFSCEDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPYKTEEFFRELIAKTPNG
                     GKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGLGERAGNASVEEIVMALKVRH
                     DLFGLETGIDTTQIVPSSKLVSTITGYPVQPNKAIVGANAFSHESGIHQDGVLKHRET
                     YEIMSAESVGWATNRLSLGKLSGRNAFKTKLADLGIELESEEALNAAFARFKELADKK
                     REIFDEDLHALVSDEMGSMNAESYKFISQKISTETGEEPRADIVFSIKGEEKRASATG
                     SGPVDAIFKAIESVAQSGAALQIYSVNAVTQGTESQGETSVRLARGNRVVNGQGADTD
                     VLVATAKAYLSALSKLEFSAAKPKAQGSGTI"
     gene            6303..7412
                     /gene="proB"
                     /locus_tag="ACFM6C_001251"
     CDS             6303..7412
                     /gene="proB"
                     /locus_tag="ACFM6C_001251"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004349 - glutamate 5-kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HFC6158706.1"
                     /translation="MKYKRIVFKVGTSSITHSDGSLSRGKIQTITRQLAALHHAGHEL
                     VLVSSGAVAAGFGALGFKKRPVKIADKQASAAVGQGLLMEEYTANLSSDGIVSAQILL
                     SRADFADKRRYQNAGGALSVLLQRRAVPIINENDTVSVEELKIGDNDTLSAQVAAMIQ
                     ADLLVLLTDIDGLYTGNPNSNPDAVRLDKIEHINHEIIEMAGGSGSANGTGGMLTKIK
                     AATIATESGVSVYICSSLKPDALAEAADNQADGSFFVPRAKGLRTQKQWLAFYSESRG
                     SVYVDEGAEHALSEQGKSLLMSGIAGIEGHFSRMDTVTVYSKATKQPLGKGRVLFGSA
                     AAEDLLKSRKAKGVFIHRDDWISITPEIRLLLTEF"
     gene            7425..8687
                     /locus_tag="ACFM6C_001252"
     CDS             7425..8687
                     /locus_tag="ACFM6C_001252"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004350 - glutamate-5-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HFC6158707.1"
                     /translation="MSNTQKQLALAKAAKKSVNTADTEEKNRALLAMADSLEAAAADI
                     LAANRQDLEAAAGNIPESMTDRLLLDGKRICAMADGIRAVTALPDPVGEILETSTLPN
                     GLEIVKKRVAMGVIGIIYESRPNVTSDAAALALKSGSAVVLRSGKDAFQSARAIVAAL
                     KAGLAQTRIDPDALQLIENTGREGSYEMMRAKDYLDLLIPRGGAGLIRAVVENAVVPV
                     IETGTGIVHIYIDKDADWDKALRIVYNAKTSRPSVCNSMEVLLVHEDIAADFLPKLER
                     LLVRDRIEAGLPPVRFRLDPQAARHIGGEAAGADDFDTEFLDYILAVKTVASVEEAVG
                     HIEAHGTHHSDGIVTENRHAADYFTTHIDSAAVYVNASTRFTDGGEFGLGCEMGISTQ
                     KLHARGPMGLKELTSYKYIVQGTGQVRE"
BASE COUNT         1977 a         2471 c         2279 g         2001 t
ORIGIN      
        1 aaagaaacct tttttcccga taagtttccg tgccgacagg tctagattcc cgcctgcgcg
       61 ggaatgacga aatttcaaag ttatggcgtt atcggaaaaa caaaaaatca aagccggaga
      121 atttatccca aacaaccgga tttcaaaaaa accagattcc cgccttcgcg ggaatgacgg
      181 attttaggtt tctgttttgg tttctgtttt cgcgggaata acaacttaga aattgcccga
      241 aaccccaaaa acagaaaccg gacaaacggg ttttccgcca aagccggcat tttccgactt
      301 tgcttcaggc atcttcccca ccgcccaaaa tcatcgaacc gataccggca tcggtaaaga
      361 tttccagcaa aagcgcgttg ggcaacctgc cgtcgatgat atgcgtggct ttcacaccgt
      421 tgacggcggc ttcgaccgca gaagcgattt tcggcagcat accgccatac agcgtgccgt
      481 cggcaatcag ttcatcaatc cgtttcggcg tgagtttggt cagcagattg cccgttttgt
      541 ccatcacacc ggcgatattc gtcatcatca agagtttttc agcgttcaat tcttccgcca
      601 atttgcctgc caccaaatcg gcgttgatgt tgaacgcttc gcctttttca cctacgccga
      661 cgggggcgac gacgggaatg cagccgcgtt ctatcagccc tttaaccaaa ccggtatcga
      721 tgctttccac cgtaccgacc tgtccgatgt ccacgccatt ctgttcgggc gtatcgatca
      781 aaagtttctt cgccttaatg aaatgatcgt cgcgtccgct cacgccgacc gcgtgtccgc
      841 catatgtgtt aatcatcgac acgatttctt tattgacatg cccgcccaac accatttcga
      901 caatatccat cgcctctttg tcggtaacgc gcattccttg gacaaactca ccctttttgc
      961 cgactttttc aagcatcgca ttgatctgcg gcccgccgcc gtgaacgatg acgggatgaa
     1021 tgccgaccag cttcagcagc acgacatcgc gggcaaaccc tgctttcaag gcaggttcgg
     1081 tcatcgcgtt gccgccgtac ttgatgacgg cgaccgaacc ggaaaaccgg cggatgtaag
     1141 gcagcgcttc ggcaaggata cgcgctttgt cggcggcgga aataatgttt tcagactcca
     1201 taacgactcc ctattgttga caatttcggc ttatgttaac gccaaacgcc gtctgaaaca
     1261 atcttcagac ggcatccggc acaccttcgg gcaggttgaa gccttgcgat acgggcggta
     1321 aaatcgcggt ttatccggtt cgagaaaccg gcgacagcaa ggactttccc atgattaaaa
     1381 tcagcacccg cttcgatgcc ggctcggtcg tcgtcaaaga cctgaccgac ccttccaaca
     1441 tccgcctcgc cctgcgtccc gacaacgcct ccgattttgc acaatggttc tacttccggc
     1501 tgcaaggcgc ggcatatcaa aactgcatca tgcattttga aaacgcggca gaagccgcct
     1561 acccgaaagg ctgggaaggc tatcaggcgt gtgcctcata cgaccgccgc aactggttcc
     1621 gcgtaccgac ttcctacgaa aacggcgtac tgaccgtcaa tcatacgccg ctgtccaaca
     1681 gcgtgtatta cgcctatttc gaaccttact ccgaagaaca gcatttaaac ctcctcggcg
     1741 acgcgcaagg cagcggcctg tgccgcatcg acgacttggg cagcaccgtg caagggcgcg
     1801 acatcaatct gctgaccatc ggcaatcagg tcgaaagcga tctgaaaatc tggattaccg
     1861 cccgccagca tccgggcgaa accatggcgg aatggtttgt cgaggggctg ctcggcaggc
     1921 tgctcgatcc gcaagacccg acagcgcgca ccctgctcga ccgcgccacg ttctatatcg
     1981 tccccaatat gaaccccgac ggttcggcac tgggcaacct gcgtaccaac gccgccggtg
     2041 cgaacctcaa ccgcgaatgg gaaaatccga ctttggaaaa aagccccgaa gtgttcttcg
     2101 tgcgcgaaaa aatgctggaa accggcgtgg atttgttctt ggacatccac ggcgacgaag
     2161 gactgccctt tgtctttgtt gcaggtacgg aaggcgtgcc gaactacaat ccgcgcattt
     2221 ccgcgttgga aacacagttc aaaaccgccc ttttgaacgc cagccccgat ttccaagacg
     2281 aatacggtta cgaaaaagat gcgcccggtc aggcaaacat gaccttggca acaaactggg
     2341 tcggcaaccg tttcaactgc cttgcctata cgttggaaat gccgttcaaa gacaatgcca
     2401 acctgcccga cgacgatttc ggatggaacg gtcaacggtc gttgcgcctg ggcgaagccg
     2461 cgttgtccgc catcctcaac gtcatcggcg atttgcgctg aaacccttat tgcagaaatg
     2521 ccgtctgaag catcatgcct ttcagacggc atttgaaaac gaaagcctgt tatgattatc
     2581 catccccaat tcgatcccgc cctcatcagt atcggcccgc ttgccgtccg ctggtatgcc
     2641 ctaagctaca tcctcggatt tattcttttt acctttctcg gcagaaggcg catcgcgcaa
     2701 ggcttgtccg tttttaccaa agaatcgctc gacgacttcc tgacatgggg cattttgggc
     2761 gtaattttgg gcgggcgttt gggttacgtc ctgttttaca agttttccga ctacctcgcc
     2821 catccgcttg atattttcaa ggtatgggaa ggcggaatgt cgttccacgg cggctttttg
     2881 ggtgtagtta ttgccatatg gttgttcggc cgcaaacacg gcatcggctt cctcaaactg
     2941 atggacacgg tcgcaccgct cgttccgctg ggtctcgctt cgggacgtat cggcaacttc
     3001 atcaacggcg aactttgggg acgcgttacc gacatcaacg cattttgggc aatgggcttc
     3061 ccgcaggcgc gttacgaaga tgccgaagcc gccgcgcaca atccgctttg ggcagaatgg
     3121 ctgcaacaat acggtatgct gccgcgtcat ccctcgcagc tttatcagtt tgcacttgaa
     3181 ggcatctgcc tgttcgccgt cgtttggctg ttctctaaaa aacagcggcc gaccggacaa
     3241 gtcgcctcgc tcttcctcgg cggctacggc atattccgct tcattgccga attcgcacgc
     3301 caacccgacg actatctcgg gctgctgacc ttggggctgt cgatggggca atggttgagc
     3361 gtcccgatga ttgttttggg tatcgtcggc tttgtccggt tcggcatgaa aaaacagcac
     3421 tgaccgcctg tgaaaaatac cgtctgaaac atggaaatcc ggtttcagac ggcattttta
     3481 cgtttggttc atggaaacaa acgcttcaat tcttaccgca acacgccttg tattttctgc
     3541 cgctgccgca cggacaggga tcgttcctgc ctgttttttc gccttccctg cggacggttt
     3601 gcggcttgtt gatgaccgcc tgccagtagc ggtagatatc cgccaatgca taaggcaact
     3661 cggattccag ttccgccagc tcgccttctg tgaattgcag acggatagcg ccgttgtcct
     3721 cttcgtcgta aataccgccc aatgccatga tgggataaaa caactcttca aacgcttcat
     3781 catcgacggc ttcaaaccaa tcggtcggca caatatccaa accgtaaaga taagcattgc
     3841 accatgtgta aaaatcgctg ccgccgtctt cgttttcata cagccacaaa tcgggcagtt
     3901 ttttatccga catcgcggcg gttgtttcca tcgccattgc caaaaccagc cgttcgattt
     3961 cggaacgttc ggcggcggta aattgcgatt cgtcgcccaa cacttcgggc agccagtcga
     4021 gcggtgtcaa tttgtccggc ccgctcaaca gcgccgtcat aaaaccttga acctcgtcgc
     4081 aacgcatcgt gttgccttgt tcgcttttgg catccaacaa ttcgctcaac cgccgtttgg
     4141 atgcttcggt aaattttcgg gaatccatca ttttcctttt caaatgggtt ttgcgcccta
     4201 ttatcgccgc aatgccgtct gaagcctttt tatgcttcag acggcatcgt ctgttttcac
     4261 gctcaaatcg taccgctgcc ctgcgctttc ggtttggcgg cactaaattc cagcttgctc
     4321 aaagcggaaa ggtaggcttt ggcggtggcg accaaaacgt cggtatccgc gccctgaccg
     4381 ttgacgacgc ggttgccgcg cgccagacgg acgctggttt cgccctggct ttccgtacct
     4441 tgcgtgacgg cgttgacgga ataaatctgc aaagccgcgc cgctttgcgc cacgctttca
     4501 atcgctttga aaatcgcatc cacggggccg gagcctgtgg cggaagcgcg tttttcttcg
     4561 cctttgatgc tgaacacgat gtcggcgcgc ggctcttcgc cggtttcagt gctgattttt
     4621 tgggagatga atttgtagct ctcggcattc atgctgccca tttcgtcgga taccagtgcg
     4681 tgcaggtctt catcgaagat ttcgcgtttt ttgtcggcga gttctttgaa gcgggcaaac
     4741 gcggcgttca gtgcctcttc gctttccaac tcgatgccca aatccgccag cttggttttg
     4801 aaggcgttgc ggccggacaa tttgcccaag ctcaaacggt ttgttgccca gccgaccgat
     4861 tcggcggaca taatctcgta agtttcgcgg tgtttcagca ccccatcctg atggatgccc
     4921 gattcatgcg aaaaggcatt ggcaccgaca atggctttgt tgggctgcac gggatagccc
     4981 gtaatggtgg acaccagttt ggacgaaggc acgatttgcg tggtatcgat gccggtttcc
     5041 aagccgaaca agtcgtggcg cactttcaac gccatcacga tttcttcaac cgaagcattg
     5101 cctgcacgtt cgcccaagcc gttgacagta cattccacct gacgcgcacc gccttttaat
     5161 gcggcaagcg aattggcaac cgccaagccc aaatcgttgt ggcagtgtgc cgaccaaacg
     5221 actttgccgc cgttgggcgt tttggcaatc agttcgcgga aaaattcttc ggttttgtac
     5281 gggatggaat agccgacggt atcgggaata ttgatggtgg tcgcgcccgc ttcaatcacc
     5341 gcgccgcaga tttcggcaag gaaatcgatt tccgaacgca acgcgtcttc gcaggaaaat
     5401 tccacatcgt cggtgtattc acgagcgatt ttcaccgctt tgaccgccgc ctcaatcacc
     5461 tgcttcggct tcatcttcaa tttgtactcc atatggatgg ggctggtggc gatgaaggtg
     5521 tggatgcgtt ttttcggcgc gggcgcaacg gcctcacccg cctgacggat gtcccgctcg
     5581 atggcgcggg acaatgaaca gaccgttgat ttggtaatgg ttttcgcaat cgcattgacc
     5641 gcctcgaaat cgcccgggct ggcagcggca aaacccgctt cgatgatgtc cacacccaat
     5701 ttttccagct ggcgggcgac gcggattttt tcctctttgg tcatagcggc gccgggcgac
     5761 tgctcgccgt cgcgcagggt ggtgtcgaaa atgataacgc ggttggcctg tgtcatttct
     5821 gttctctcca gagattcgtt tttttgtaaa aaagcattca aatccagcgg cctgccttgc
     5881 gattcggcaa gcgcggtcag cttttgcagt tgcgccaaag gcagcgaccc gcgcgtgcgc
     5941 catttataga tggcggcggt cgtcgcggca ttttcgggat cgtgctgttt caacgcttcg
     6001 gcaagcgcgt tcacgccgcc gaaataagca accaagcggt ctatatctaa ttgcatggta
     6061 gtccttgtct aaaataaatc agcctacagc agaaatatgg acaggattat acgcattttg
     6121 gacaaaacgg caatataaat ttgaaaaaat ctcaataaac cgccatagat tttattaatt
     6181 ttatacattt tgtccatttt attgcagaca cggcgtgatt gttgacaatt gcggcagaac
     6241 agggcaaatt cggcggcaca aggcggcaaa cgagacagga caaaccaaca aggacggaaa
     6301 caatgaaata caaaagaatc gtatttaaag tcggcacatc ttcgattacc cattcggacg
     6361 gcagtctctc gcgcggcaaa atccaaacca tcacccgcca gcttgccgca ttgcatcatg
     6421 cgggacacga gctggtcttg gtatcttccg gcgcggttgc ggcagggttc ggtgcgctgg
     6481 gtttcaaaaa acgtccggtc aaaatcgccg acaaacaggc ttccgccgcc gtcgggcagg
     6541 ggctgctgat ggaagaatat acggcaaacc tgtcttcaga cggcatcgtg tccgcacaaa
     6601 tcctgctcag ccgcgccgac tttgccgaca aacgccgcta ccaaaatgcc ggcggcgcac
     6661 tttccgtgct gctgcaacgc cgcgccgtcc ccatcatcaa tgaaaacgat acggtttcgg
     6721 ttgaggaatt gaaaatcggc gacaacgaca cattgagtgc gcaagtggcg gcgatgatac
     6781 aggcagacct cttggtgctg ctgaccgaca tagacggtct ttacacgggc aacccgaaca
     6841 gcaatcccga tgccgtacgg ctggacaaaa tcgaacacat caaccatgaa atcatcgaaa
     6901 tggcgggcgg ctcgggttcg gcaaacggca caggcggtat gctgactaaa atcaaagcgg
     6961 cgacgattgc gaccgagtcc ggcgtatcgg tctatatctg ttcctcgctc aaacccgatg
     7021 cacttgccga agcggcagat aatcaggcgg acggctcgtt tttcgtcccc cgtgccaaag
     7081 gtttgcggac gcagaagcaa tggctggcgt tctattccga aagccggggc agcgtttatg
     7141 tggacgaagg tgcggaacac gctttgtccg aacaggggaa aagcctgctg atgtcgggca
     7201 ttgccggaat cgaagggcat ttttcccgta tggacaccgt aaccgtgtac agcaaggcaa
     7261 ccaaacagcc cctgggcaaa gggcgcgtcc tgttcggttc tgccgccgcc gaagacctgc
     7321 tcaaatcgcg taaggcgaaa ggcgtgttca tccatcggga cgattggatt tccatcacgc
     7381 ccgaaatacg cctgcttctg accgaatttt agaaaaggaa acccatgtca aacacacaaa
     7441 aacagcttgc ccttgccaaa gcggcaaaaa aatccgtcaa cacggcggat acggaagaaa
     7501 aaaaccgcgc gctgcttgct atggcggaca gtctggaagc ggcggcggca gatattttgg
     7561 cggcaaaccg tcaagacttg gaagccgcgg caggcaacat tcccgaaagc atgaccgacc
     7621 gccttttgtt ggacggcaaa cgcatttgcg cgatggcgga cggcattagg gcggttaccg
     7681 cactgcccga ccccgtgggc gaaatactgg aaacctcgac tctgcccaac ggcttggaaa
     7741 tcgtcaaaaa gcgtgtggcg atgggcgtta tcggcattat ttacgaaagc cgcccgaacg
     7801 ttacgtccga tgcggcggct ttggcactga aaagcggcag cgcggtcgta ctccgcagcg
     7861 gcaaagatgc attccaatcc gcacgcgcca tcgttgccgc actcaaagcc ggtttggcgc
     7921 aaacccgcat cgaccccgac gcgctccagt tgattgaaaa cacagggcgt gagggcagtt
     7981 acgaaatgat gagggcgaaa gattatctag acctgctgat tccgcgcggc ggggcggggc
     8041 tgatacgggc ggtggttgaa aatgccgtcg tgccggtcat tgaaacggga acgggcattg
     8101 tccacattta tatcgacaag gacgctgatt gggataaggc actccgtatc gtgtacaacg
     8161 ccaaaaccag ccgtccgtcc gtgtgcaact cgatggaagt gctgctggtg catgaagaca
     8221 ttgctgccga cttcctgccc aagctcgaac gactgttggt tcgcgaccgc atagaagccg
     8281 gactgccgcc cgtccgcttc cgtttggatc cgcaggcggc gcggcatatc ggcggcgaag
     8341 cggcgggtgc agacgatttc gataccgagt ttttagacta catcctcgcc gtgaaaaccg
     8401 tcgcatcggt cgaagaggcg gtcgggcaca tcgaagccca cggcacacac cattcagacg
     8461 gcatcgttac cgaaaaccgc cacgctgcgg actatttcac gacccatatc gattctgccg
     8521 ccgtgtatgt caacgcgtcc acgcgcttta ccgacggcgg cgaattcggc ttgggttgcg
     8581 aaatgggcat ctccacgcaa aaactccacg cccggggtcc gatgggtttg aaagagctga
     8641 cgagttacaa atacatcgta caaggcacgg gacaggttag ggaataatcc gaattcaaac
     8701 gtctgatata gtggattaac tttaaacc
//
LOCUS       DAXHPV010000078         8705 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.078, whole genome shotgun sequence.
ACCESSION   DAXHPV010000078 DAXHPV010000000
VERSION     DAXHPV010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8705
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.078"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(133..1575)
                     /gene="aldA"
                     /locus_tag="ACFM6C_001253"
     CDS             complement(133..1575)
                     /gene="aldA"
                     /locus_tag="ACFM6C_001253"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HFC6158708.1"
                     /translation="MKQLAMYINGRFENDFNGEWRDVLNPSTEEAIAREPKGGRADVD
                     RAVAAARAAQPAWERLPAVERGAYLRKIAQGIRKRSDELTDTIVAEGGKTKDLARVEV
                     MFTADYLDYQAEWARRYEGEIIQSDRPRENILLFKRPLGVIAGILPWNFPFFLIARKM
                     GPALVTGNTIVVKPSSVTPINCHIFAEIVDAVGLPAGVFNVVNGPGAEIGNALSAHPQ
                     VDMVSLTGSVEAGRQVMEAASANITKVSLELGGKAPAIVLKDADLDLAVKSILASRVG
                     NTGQICNCAERVYVHSSLKDAFIEKMTAAMKGVRYGNPAEAEAGALEMGPLIEERAVK
                     AVAEKVERAVKQGAKLVCGGKRAEGRGYFFEPTLLTDTDNSMDIMKEETFGPVLPVSA
                     FDTLDQVIALANDCEFGLTSSVYTTNLNEAFYVTRRLQFGETYINRENFEAMQGFHAG
                     WKKSGIGGADGKHGLEEYLQTQVVYLETDI"
     gene            complement(1683..2600)
                     /locus_tag="ACFM6C_001254"
     CDS             complement(1683..2600)
                     /locus_tag="ACFM6C_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6158709.1"
                     /translation="MEKAEHLNSSRFVNLVKSGGGSYVEGSYRFDTLSNGISIHGGTV
                     TARCDFCSSRLAEPYVSFVLLLEGSLDFGINRCRFQIDADGGKIVLIAVGEEVLFSRY
                     LYRGGKTVKMTIKGMEQWLLRPEYARFAPLLYREPVRIWDLPPNLRGLAASCLKAVPK
                     GHLGETLRREADVLRLLSDLWDTVSDGIGPAAGQTAEADAMPSEDFSRTLNAAFADGA
                     HQVNRLTDALNISERTLQRRMRDHFGITASEWLHHKQMQHALYLLQNGGKSIGETAYL
                     CGYRHVSSFTQAFRQYFGSTPAETKKENR"
     gene            2773..3573
                     /locus_tag="ACFM6C_001255"
     CDS             2773..3573
                     /locus_tag="ACFM6C_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6158710.1"
                     /translation="MSPSPFIEMKDVAFAYGDRPILKNINFSIPQGNFAAVMGGSGSG
                     KTTLMRLITGQIRPQSGQVLIEGRDLAGFSADELYEHRRRMGVLFQHGALFTDLSVFD
                     NIAFPMRELTRLPEAVIRDLVLLKLNAVGLRGVENLMPSELSGGMSRRVALARTIALD
                     PEIMLYDEPFTGLDPISLGVIAHLISRVNKALRSTSIMVTHDIEKSLEIVDQVIFLAH
                     GEIMFSGSPQEMRELDSPWVRQFVGGLADGPVAYRYPAQTSLHQDLLG"
     gene            3621..4397
                     /gene="mlaE"
                     /locus_tag="ACFM6C_001256"
     CDS             3621..4397
                     /gene="mlaE"
                     /locus_tag="ACFM6C_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HFC6158711.1"
                     /translation="MNFIRSVGAKTLGLIQSLGSITLFLLNILAKSGTAFVRPRLSVR
                     QVYFAGVLSVLIVAVSGLFVGMVLGLQGYTQLSKFKSADILGYMVAASLLRELGPVLA
                     AILFASSAGGAMTSEIGLMKTTEQLEAMNVMAVNPVARVVAPRFWAGVFSMPLLASIF
                     NVAGIFGAYLVGVTWLGLDSGIFWSQMQNNITIHYDVINGLIKSAAFGVAVTLIAVHQ
                     GFHCVPTSEGILRASTRTVVSSALTILAVDFILTAWMFTD"
     gene            4448..4942
                     /gene="mlaD"
                     /locus_tag="ACFM6C_001257"
     CDS             4448..4942
                     /gene="mlaD"
                     /locus_tag="ACFM6C_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015914 - phospholipid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HFC6158712.1"
                     /translation="MKKNILEFWVGLFVLIGAAAVGFLAFRVAGGAAFGGSDKTYAVY
                     ADFGDIGGLKVNAPVKSAGVLVGRVGAIGLDPKSYQARVRLDLDGKYQFSSDVSAQIL
                     TSGLLGEQYIGLQQGGDTENLAAGDTISVTSSAMVLENLIGKFMTSFAEKNADGGNAE
                     KAAE"
     gene            4979..5569
                     /locus_tag="ACFM6C_001258"
     CDS             4979..5569
                     /locus_tag="ACFM6C_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HFC6158713.1"
                     /translation="MKKSSLISALGIGILSIGMAFAAPADAVNQIRQNATQVLSILKS
                     GDANTARQKAEAYAIPYFDFQRMTALAVGNPWRTASDAQKQALAKEFQTLLIRTYSGT
                     MLKLKNANVNVKDNPIVNKGGKEIIVRAEVGVPGQKPVNMDFTTYQSGGKYRTYNVAI
                     EGASLVTVYRNQFGEIIKAKGVDGLIAELKAKNGSK"
     gene            5626..5904
                     /locus_tag="ACFM6C_001259"
     CDS             5626..5904
                     /locus_tag="ACFM6C_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance protein MlaB"
                     /protein_id="HFC6158714.1"
                     /translation="MHTELNNGTLHISGDITVKTLTGEAFERFQQQCRLKETIAVDFG
                     GVKRADSACVSLLLEVLRGCKGSVRLTGIPESVRALSELYEIKDWLKS"
     gene            5901..6728
                     /locus_tag="ACFM6C_001260"
     CDS             5901..6728
                     /locus_tag="ACFM6C_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HFC6158715.1"
                     /translation="MKKTAYAFLLLIGFASAPAFAETRPADPYEGYNRAVFKFNDQAD
                     RYIFAPAARGYRKVAPKPVRAGVSNFFNNLCDVVSFGSNILRLDIKRASEDLVRVGIN
                     TTFGLGGLIDIAGAGGIPDNKNTLGDTFASWGWKNSNYFVLPVLGPSTVRDALGTGIT
                     SVYSPKNIVFRTPVGRWGTTAVSAVSTREGLLDLTDSLDEAAIDKYSYTRDLYMKVRA
                     RQTGATPAEGTEDNIDIDELVESAETGAAETAVQEDSVSETQAEAAGEAETQPGTQP"
     gene            6853..7215
                     /locus_tag="ACFM6C_001261"
     CDS             6853..7215
                     /locus_tag="ACFM6C_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003681812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ"
                     /protein_id="HFC6158716.1"
                     /translation="MYEVNRSVFVLIPLEPFWNWLQTLPGNHLDGLTLEDIQADANSY
                     LVRPCETADEVWDEIEARFEDIFAAELADWCEDEREWPALDADIFNEWFDIQLSTVIT
                     DLEHEPLAREAFQPINLN"
     gene            7215..7598
                     /locus_tag="ACFM6C_001262"
     CDS             7215..7598
                     /locus_tag="ACFM6C_001262"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HFC6158717.1"
                     /translation="MKLTVRNYHLDGYGHVNNARYLEFFEEARWAFFEERGLLHELAG
                     LILIVARIDIRYSRPAVEGDVLQFSCRLKTPGTRRIVLTQTITLPNGKTAAEADITLM
                     PVHAATQRTVSLPATLARALEALSE"
     gene            7595..8083
                     /locus_tag="ACFM6C_001263"
     CDS             7595..8083
                     /locus_tag="ACFM6C_001263"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin family protein"
                     /protein_id="HFC6158718.1"
                     /translation="MKKILTAAVVALIGILLAIVLIPDSKTAPAFSLSDLHGKTVSNA
                     DLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVK
                     DYGLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAL
                     AQ"
     gene            complement(8165..8293)
                     /locus_tag="ACFM6C_001264"
     CDS             complement(8165..8293)
                     /locus_tag="ACFM6C_001264"
                     /inference="COORDINATES: protein motif:HMM:NF025953.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HFC6158719.1"
                     /translation="MAGVTVGRGSVVGAGAVVTKDIPPYSLAAGNPAVVKKNLPEG"
     gene            complement(8299..8679)
                     /locus_tag="ACFM6C_001265"
     CDS             complement(8299..8679)
                     /locus_tag="ACFM6C_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-o"
                     /protein_id="HFC6158720.1"
                     /translation="MGSKFFFLLLRFAGSGLPPSHMRGIGIVGRRVRGFLARRVSPHI
                     GRGVNIERGAYVFPDTVLGDGSGIGANCEICRGLVVGKNVMMEPECLFYSNNHKFDRS
                     KNALRATRKSVRLRWRTMSGRGTG"
BASE COUNT         1945 a         2509 c         2282 g         1969 t
ORIGIN      
        1 aaatttaatc cgctatacaa agacaaaaac atcgacctcg gtcatgactg attgccgatg
       61 aagcaataaa aatgccgtct gaacctgaaa acgggttcag acggcatttt ctatcggggt
      121 tttaaagcgg cattaaatgt cggtttccaa ataaacgact tgggtttgca gatattcttc
      181 caaaccgtgt ttgccgtccg cgccgccgat accggatttt ttccaaccgg cgtggaaacc
      241 ctgcatggct tcgaagtttt cgcggttgat gtaggtttcg ccgaattgca ggcggcgggt
      301 aacgtagaag gcttcgttta aattagtcgt ataaacagaa ctggtcagac caaactcgca
      361 atcgttagcc agtgcgatga cttggtcgag cgtgtcgaaa gcggaaacgg gcagcacggg
      421 gccgaaggtt tcttctttca taatgtccat actgttgtcg gtgtcggtca gcagggtcgg
      481 ctcgaagaaa tagccgcgcc cttcggcgcg tttgccgccg cagaccagtt tcgcaccttg
      541 tttgactgcc cgttccactt tttcggcaac ggctttgacg gcgcgctctt caatcagcgg
      601 acccatttcc agcgcgcctg cttcggcttc ggcagggttg ccgtagcgca cgcctttcat
      661 ggcggcggtc attttttcaa tgaacgcgtc tttcaggctg ctgtggacat agacgcgctc
      721 ggcgcagttg cagatttgac cggtgttgcc gacgcgcgaa gccaagatgg atttcaccgc
      781 caaatccaaa tccgcgtctt tcaaaacgat ggcgggggct ttgccgccga gttccagcga
      841 aactttggtg atgttggcgg aagcggcttc catcacttgg cggcctgctt cgacggagcc
      901 ggtcaggctg accatatcga cttgcggatg ggcagacaag gcattgccga tttccgcacc
      961 cggaccgttc accacgttga acacgccggc gggcaatccg accgcatcga cgatttcggc
     1021 gaagatgtgg cagttgatcg gggttacgct gctgggtttg acaacgatgg tgttgcccgt
     1081 tactaaggcg ggacccattt tgcgggcaat caggaagaaa gggaagttcc acggcaaaat
     1141 gccggcaatt acgcccagcg gacgtttgaa caataaaata ttttcacgcg ggcggtcgct
     1201 ttggatgatt tcgccttcgt aacggcgcgc ccattcggct tggtaatcga gatagtcggc
     1261 ggtgaacatc acttccacgc gcgccaagtc tttggttttg ccgccttcgg caacaatggt
     1321 gtcggtcagc tcgtcggagc gtttgcgtat gccttgggcg attttgcgca aatacgcgcc
     1381 gcgttcgacc gcaggcagac gttcccaagc cggttgcgcc gcacgcgccg ccgctacggc
     1441 gcggtcaacg tccgccctgc cgcctttggg ttcgcgggcg atggcctctt cggtggacgg
     1501 gttcaatacg tcgcgccatt cgccgttgaa atcgttttca aagcgtccgt tgatgtacat
     1561 tgccaattgt ttcatttcgg gttctccggt tttgtagtca gatgtagttt tagtttattc
     1621 ccaaataaat tgccgtacaa gtttctttac acgcggattt cgggtttgaa atcaaatgcg
     1681 gcttaccggt tttctttttt ggtttccgca ggcgtgctgc cgaaatattg cctgaatgcc
     1741 tgagtaaagc tggaaacgtg gcggtagccg cacaaatacg cggtttcgcc tatgcttttg
     1801 cccccgtttt gcaacaggta gagcgcgtgc tgcatttgtt tgtggtgcag ccactcgctt
     1861 gccgtaatgc cgaaatggtc gcgcatacgg cgttgcagcg tcctttcact gatgttcagc
     1921 gcgtctgtca gccggttgac ttggtgtgcg ccgtcggcaa acgcggcatt tagggtgcgg
     1981 ctgaagtctt cagacggcat agcgtctgct tccgccgttt gccccgccgc cggcccgatg
     2041 ccgtctgaaa ccgtgtccca caagtccgac agcagccgca acacgtccgc ctcgcggcgc
     2101 aatgtttcgc ccaaatgccc ctttgggacg gctttcaggc aggatgccgc caagccgcgc
     2161 aggttcgggg gcaaatccca tatcctgacc ggttcgcggt aaagcagggg tgcgaaacgc
     2221 gcgtattccg gacgcagcag ccattgttcc atacctttaa tggtcatttt gaccgttttg
     2281 ccgcctcggt aaagatagcg gctgaacagg acttcttccc cgacagcaat taggacaatc
     2341 ttgccgccgt ccgcatcgat ttggaagcgg cagcggttga tgccgaagtc caaactgcct
     2401 tccagcaaga gcacgaacga cacataaggt tcggcgaggc ggctgctgca aaaatcacac
     2461 cgtgccgtta ctgtgccgcc gtggatggaa atgccgttgg acaaagtatc gaaacggtag
     2521 ctgccctcca catagctgcc gccgccgctt ttgactagat tgacgaaccg gctgctgttc
     2581 aaatgttctg ctttttccat agttttctga taaaggttat catttgaaag ataacatttt
     2641 tcgccacagc aaacaatccg ccgccgacaa cggcattttc acaacattta ccgtccgtat
     2701 gccgtctgaa aattgcccgt cttcccgata agccttaaaa tacacgccgt caaacctacc
     2761 gtccgtccgt acatgagccc atcccccttt atcgaaatga aagacgtcgc cttcgcgtat
     2821 ggcgaccgcc cgattctgaa gaacatcaat ttcagcattc cgcaaggcaa ttttgccgcc
     2881 gtaatgggcg gttcgggcag cggcaaaacc acgctgatgc gactgattac aggacagatt
     2941 cgtccgcagt ccgggcaggt tttgattgaa ggacgggatt tggcgggctt ttcggctgac
     3001 gagttgtatg aacaccgccg ccgtatgggc gtattgttcc aacacggcgc gctgtttact
     3061 gatttgtcgg tattcgacaa tatcgctttt ccgatgcgcg aactgacgcg cctgccggaa
     3121 gcggtgattc gggatttggt tttgttgaaa ttgaacgcgg tcggtctgcg cggtgtggaa
     3181 aacctgatgc cgtccgagtt gtccggcggg atgtcgcgcc gcgtcgcgct tgcccgcacg
     3241 attgcgctcg accctgaaat tatgttgtac gacgagccgt ttaccggcct cgatccgatt
     3301 tccttgggcg tgattgccca cttgatcagc cgcgtcaaca aggctttgcg ttcgaccagt
     3361 attatggtaa cgcacgacat tgaaaaatct ttggaaatcg tcgatcaggt gattttcttg
     3421 gcgcacggcg aaattatgtt ctccggctcg ccgcaggaaa tgcgcgaact ggattcgcct
     3481 tgggtgcgcc agtttgtcgg cgggctggca gacggtcccg tagcataccg ctatccggcg
     3541 caaacgtcgt tgcatcagga tttgctcggg taaatgagcc ggtgccgtct gaaaccgttg
     3601 aacttcacat atagaaattt atgaatttta tccgttccgt cggggcgaaa accctcggcc
     3661 ttattcaatc cctcggcagt attacgctgt ttctgctgaa cattctggcg aagtccggta
     3721 cggctttcgt ccgtccgcgc ctgagcgtgc gccaagtgta tttcgccggc gtgctgtcgg
     3781 tgctgattgt tgccgtttcg gggctgttcg tcggtatggt tttgggtttg cagggctata
     3841 cgcagttgtc gaaattcaaa tccgccgata ttttgggcta tatggtcgcg gcttcgctgt
     3901 tgcgcgagct gggtccggta ttggcggcta ttctgtttgc cagcagcgcg ggtggtgcga
     3961 tgaccagcga aatcggtctg atgaaaacga ccgaacagct cgaagcgatg aacgtgatgg
     4021 cggtaaaccc tgtcgcccgc gtggttgcgc cgcgcttttg ggcgggcgtg ttttccatgc
     4081 cgcttttggc ttcgattttc aacgtggcgg gtattttcgg cgcgtatttg gtcggtgtaa
     4141 cctggctggg cttggacagc ggcattttct ggtcgcaaat gcagaacaac atcacgatac
     4201 attacgatgt aatcaacggt ctgatcaaat ccgccgcgtt cggcgtggcg gtaacgctga
     4261 ttgccgtgca tcagggcttc cactgcgtcc cgacctcgga aggcattttg cgcgccagca
     4321 cgcgcacggt ggtttcgtcc gccctgacga ttttggcggt cgattttata ttgaccgcgt
     4381 ggatgtttac agattgacag ggcgtctgaa gacgaaacgc ggaacatcgg atattcaagg
     4441 aactttaatg aaaaagaaca tattggaatt ttgggtcgga ctgttcgtcc tgattggcgc
     4501 ggcggcggtc ggctttctcg ctttccgcgt ggccggcggt gcggcgttcg gcggttcgga
     4561 caaaacttac gccgtttatg ccgatttcgg cgacatcggc ggtttgaagg tcaatgcccc
     4621 cgtcaaatcc gcaggcgtat tggtcgggcg cgtcggcgct atcggacttg acccgaaatc
     4681 ctatcaggcg agggtgcgcc tcgatttgga cggcaagtat cagttcagca gcgacgtttc
     4741 cgcgcaaatc ctgacttcgg gacttttggg cgagcagtac atcgggctgc agcagggcgg
     4801 cgacacggaa aaccttgctg ccggcgacac catctccgta accagttctg caatggttct
     4861 ggaaaacctt atcggcaaat tcatgacgag ttttgccgaa aaaaatgccg acggcggcaa
     4921 tgcggaaaaa gccgccgaat aaacgtatgc catcatattc aaactaggac acttaatcat
     4981 gaaaaaatcc tccctcatca gcgcattggg catcggtatt ttgagcatcg gcatggcatt
     5041 tgccgcccct gccgacgcgg taaaccaaat ccgtcaaaac gccactcaag tattgagcat
     5101 cttaaaaagc ggtgatgcca acaccgcccg ccaaaaagcc gaagcctatg cgattcccta
     5161 tttcgatttc caacgtatga ccgcattggc ggtcggcaac ccttggcgca ccgcgtccga
     5221 cgcgcaaaaa caagcgttgg ccaaagaatt tcaaaccctg ctgatccgca cctattccgg
     5281 cacgatgctg aaattaaaaa acgccaacgt caacgtcaaa gacaatccca tcgtcaataa
     5341 aggcggcaaa gaaatcatcg tccgcgccga agtcggcgta cctgggcaaa aacccgtcaa
     5401 catggacttc accacctacc aaagcggcgg taaataccgt acctacaacg tcgccatcga
     5461 aggcgcgagc ctggttaccg tgtaccgcaa ccaattcggc gaaattatca aagcgaaagg
     5521 cgtggacgga ctgattgccg agttgaaggc taaaaacggc agcaagtaat ccataagcca
     5581 tgccgccaga ctgaaggcga catggatttt ttcctaccga acactatgca tacagaactc
     5641 aacaacggaa cactgcacat cagcggcgac atcaccgtca aaaccctgac cggggaggct
     5701 tttgagcgtt tccagcagca atgccgtctg aaagaaacca ttgccgtcga tttcggcggt
     5761 gtcaaacgtg ccgattccgc ctgcgtgtcg ctgctgctcg aagtgctgcg cggctgcaaa
     5821 ggcagcgtca ggctgaccgg cattcccgaa tccgtgcgcg cgctgtccga actgtacgaa
     5881 atcaaagact ggctgaaatc atgaaaaaaa ccgcctatgc cttcctcctg ctgatcgggt
     5941 tcgcttccgc ccctgcattt gccgaaaccc gccccgccga cccttatgaa ggctacaacc
     6001 gcgccgtttt caaattcaac gaccaagccg accgctacat tttcgcccct gccgcgcgcg
     6061 gctaccgcaa agttgcgccg aaacccgtcc gcgccggcgt gtccaatttt tttaacaacc
     6121 tgtgcgacgt ggtcagcttc ggcagcaata tcttgcgctt ggacatcaaa cgcgcaagcg
     6181 aagaccttgt ccgcgtcggc atcaacacca ctttcggttt gggcgggctt atcgacatcg
     6241 ccggcgcggg cggcattccc gacaataaaa acaccttggg cgacacgttt gcttcgtggg
     6301 gatggaaaaa cagcaattat ttcgtgttgc ccgtcttagg gccgtccacc gtccgcgacg
     6361 cgctcggcac gggtattacc tccgtttatt cgcccaagaa tatcgtcttc cgcacccctg
     6421 tcggacgctg gggcacgact gccgtatccg ccgtcagtac gcgcgaaggt ctgctcgatt
     6481 tgaccgacag tctggacgaa gccgccatcg acaaatacag ctacacgcgc gacctctata
     6541 tgaaagtccg tgcgcggcag accggtgcaa cacctgccga aggtacggaa gataacatcg
     6601 acatcgacga attggtcgaa agtgccgaaa ccggcgcggc ggaaactgcc gttcaagaag
     6661 attccgtatc cgaaacacag gcagaagcag caggggaagc cgaaacgcaa cctggaacac
     6721 aaccttaaag ccatgccgtc tgaaaatccg tgttcggacg gcattccctt ctgtcggaac
     6781 ggacagtccg aaaccacaga ttgggctata atctcttttt tgcgcatacc gcgcgacagc
     6841 aaaggaaaaa ccatgtacga agtcaaccgc agcgtattcg tcctcatccc tttagaacct
     6901 ttttggaact ggctgcaaac cctgccgggc aaccacctcg acggactgac tcttgaagac
     6961 atccaagccg acgccaattc ctaccttgtc cgcccgtgcg aaaccgccga cgaagtatgg
     7021 gacgaaatcg aagcccgttt tgaagacatt ttcgccgccg aacttgccga ctggtgcgaa
     7081 gacgaacgcg agtggcctgc gctcgatgcc gacattttca acgaatggtt cgacatccag
     7141 ctttctaccg tcatcaccga cctcgaacac gaaccgcttg cccgcgaagc cttccaaccc
     7201 atcaacctga actgatgaag ctgaccgtcc gcaactacca tctcgacggc tacggccatg
     7261 tcaacaatgc gcgctacctc gaatttttcg aagaagcgcg ctgggcgttt tttgaagaac
     7321 gcggactgct gcacgagttg gcaggcctca tactgattgt cgcccgcatc gacatccgat
     7381 acagccgccc cgccgtcgaa ggcgacgtat tgcagttttc atgccgcctg aaaacccccg
     7441 gcacgcgccg tattgtgctg acccagacga ttacactgcc aaacggcaaa accgccgcag
     7501 aagccgacat caccctgatg cccgtccacg ccgccacaca acgcaccgtc agcctgcccg
     7561 ccacccttgc ccgcgcattg gaagccttgt ccgaatgaaa aaaatactca ccgccgccgt
     7621 cgtcgcactg atcggcatcc tccttgccat cgtcctcatc cccgacagca aaaccgcgcc
     7681 cgctttctcc ctgtccgacc tgcacggaaa aaccgtttcc aacgccgacc tgcaaggcaa
     7741 agttaccctg attaattttt ggtttccctc ctgtccgggt tgtgtgagcg aaatgcccaa
     7801 aatcattaaa acggcaaatg actataaaaa caaaaacttc caagtccttg ccgtcgccca
     7861 gcccatcgat ccgatagaaa gcgtccgcca atatgtcaaa gactacggtt tgccgtttac
     7921 cgtcatgtat gatgcggaca aagctgtcgg acaggcgttc ggcacacagg tttatccgac
     7981 ttccgtcctt atcggcaaaa aaggcgaaat cctcaaaact tatgtcggcg aacccgattt
     8041 cggcaaactc taccaagaaa tcgataccgc gctggcacaa tagcgatgcc gtctgaagcg
     8101 caaaaaaaca gaaacgatgt tcctgttttt tcagatcatc cgccccgaca cgttcagacg
     8161 gcattcaacc ttccggcaga ttctttttca ccactgccgg attgcctgcc gccaaagagt
     8221 agggcggaat gtcttttgta accaccgcgc ctgcgcccac gaccgaaccg cgtccgacgg
     8281 ttacgcccgc cattacaatc accctgtgcc ccggccagac atcgtcctcc aacgtaatcg
     8341 gacggatttc cgtgtagccc tcaaagcgtt ttttgaacgg tcaaacttgt ggttatttga
     8401 ataaaacaga cattccggct ccatcatcac atttttgccg accaccagcc cacggcagat
     8461 ttcacagttt gccccgatgc ccgagccgtc gcccaaaacc gtatccggaa acacatacgc
     8521 cccgcgttcg atattgaccc cgcgtccgat atgcggagaa acccgccgcg ccaaaaaacc
     8581 gcgcacccgt ctgccgacga tgccgatgcc gcgcatatgt gacggcggca accccgaacc
     8641 ggcaaaacgc agcagcagga aaaagaattt tgatcccatc aaacctccct caaaagaact
     8701 tttta
//
LOCUS       DAXHPV010000079         8704 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.079, whole genome shotgun sequence.
ACCESSION   DAXHPV010000079 DAXHPV010000000
VERSION     DAXHPV010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8704)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8704)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8704
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.079"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            197..1732
                     /locus_tag="ACFM6C_001266"
     CDS             197..1732
                     /locus_tag="ACFM6C_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HFC6158721.1"
                     /translation="MSDSKTKERATFGTRRAFMIAAIGSAVGLGNIWRFPYIAFENGG
                     GAFILPYLVALLTAGIPLLLLDYAIGHRYRGSAPLAFRRLGRWFEPVGWWNVMTNIVI
                     CIYYAVIIGWAASYTYYSVNAAWGADPQGFFFKDFLQMSGPEALGLDFVGKVAGPLAG
                     VWVFTAAIMALGVQKGVARASSFFMPLLLVMFLIMVGISLTLPGAAKGLDALFTPDWS
                     KLADSKVWVAAYGQIFFSLSICFGIMVTYSSYLKKKTDLGGTGLVVGFANSSFELLAG
                     IGVFAALGFMAQAGGKAVNEVASGGIGLAFIAFPTIINQAPMGWLIGILFFGSLVFAG
                     VTSMISILEVIVAAIQDKLNIGRVNATLLVCIPMGIVSTLLFGTATGLPVLDVMDKFV
                     NTYGIVAAGFVYVAAIIISGRLPELRKHLNALSSIRIGGLWTVCVVVTVVMLGYMLFK
                     DTSGLMEKNYEGYPDGFLSIFGWGMSAALVVFGLLLSLLPWKHGQDFNVKDEHEHEQG
                     EEK"
     gene            1729..1821
                     /locus_tag="ACFM6C_001267"
     CDS             1729..1821
                     /locus_tag="ACFM6C_001267"
                     /inference="COORDINATES: protein motif:HMM:NF033493.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine/alanine import family NSS transporter
                     small subunit"
                     /protein_id="HFC6158722.1"
                     /translation="MSTSAIVMMIVSIVIIWGGLLLSLLRLPNE"
     gene            complement(1857..3101)
                     /gene="lysA"
                     /locus_tag="ACFM6C_001268"
     CDS             complement(1857..3101)
                     /gene="lysA"
                     /locus_tag="ACFM6C_001268"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HFC6158723.1"
                     /translation="MTLFCEQVPYPRLAEAFGTPLYVYSQSALTEAFEHYQTAFAALN
                     PLVCYAVKANGNLSIIKHFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAE
                     IEFALNAGVKCFNMESIPEIDRIQKVAARLGKTAPVSLRVNPDVDAKTHPYISTGLKA
                     NKFGIAYADALEAYRHAAQQPNLKIIGIDCHIGSQLTDLSPLVEACERILILVDALAA
                     EGIVLEHLDLGGGVGIVYQNEKVPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGA
                     LLTRVEFVKYGEEKNFVMVDAAMNDLMRPALYDAYHHIEAVEPKNIAPLTANIVGPIC
                     ETGDFLGKDRTIACEEGDLLLIRSAGAYGASMASNYNARNRAAEVLVNGGGYKLIRRR
                     ETLEQQMANELACLQAEHQNAV"
     gene            complement(3112..3282)
                     /locus_tag="ACFM6C_001269"
     CDS             complement(3112..3282)
                     /locus_tag="ACFM6C_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HFC6158724.1"
                     /translation="MKYGVFFAAAMALLLSACGYKGDLYLPKEGDKARFGVIQTGLQL
                     QSKPQSAPQTRK"
     gene            3353..3676
                     /gene="cyaY"
                     /locus_tag="ACFM6C_001270"
     CDS             3353..3676
                     /gene="cyaY"
                     /locus_tag="ACFM6C_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HFC6158725.1"
                     /translation="MMTESEFIRASEALFEHIEDQIDENGWDFDCRFAGNVLTIEAEN
                     GTQIIVNRHTPNQELWIAAKSGGYHFAEQNGKWLATRDSRDFYDVLNEALSAASGEAV
                     KIAEL"
     gene            3703..4719
                     /locus_tag="ACFM6C_001271"
     CDS             3703..4719
                     /locus_tag="ACFM6C_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HFC6158726.1"
                     /translation="MNTRPFYFGLIFIAIIAILANYLGNTDFSHHYHISALIIAILLG
                     MAIGNTIYPQFSTQVEKGVLFAKGALLRTGIVLYGFRLTFGDIADVGLNAVVTDAIML
                     ISTFFFTALLGIRYLKMDKQLVYLTGAGCSICGAAAVMAAEPVTKAESHKVSVAIAVV
                     VIFGTLAIFTYPLFYTWSQHLINAHQFGIYVGSSVHEVAQVYAIGENIDPIVANTAVI
                     SKMIRVMMLAPFLLMLSWLLTRSNGVSENTSHKITIPWFAVLFIGVAIFNSFDLLPKE
                     LVKLFVEIDSFLLISSMAALGLTTQASAIKKAGLKPFVLGILTYLWLVVGGFLVNYGI
                     SKLI"
     gene            4744..5163
                     /locus_tag="ACFM6C_001272"
     CDS             4744..5163
                     /locus_tag="ACFM6C_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="HFC6158727.1"
                     /translation="MAQLPLYLTSEIKDFTVGTPEVLQSFFEYVPYGVVFEDDGDTGY
                     FYAASQDGILDALHIYNVEDVSDKHIPNYVLILWDDACTIAALCINDYIHAVYDFVAQ
                     AGYCRNGFPEAQGEWLKVADRVLDDELLDKILSRKPT"
     gene            5185..5691
                     /gene="luxS"
                     /locus_tag="ACFM6C_001273"
     CDS             5185..5691
                     /gene="luxS"
                     /locus_tag="ACFM6C_001273"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HFC6158728.1"
                     /translation="MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCIPN
                     KEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISPMGCRTGFYMSLIGTPSEQQVAD
                     AWLASMQDVANVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
                     LDEGLLNA"
     gene            5837..8632
                     /gene="polA"
                     /locus_tag="ACFM6C_001274"
     CDS             5837..8632
                     /gene="polA"
                     /locus_tag="ACFM6C_001274"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HFC6158729.1"
                     /translation="MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNM
                     LRRLRSEYPHDYCAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTG
                     WPVLVIGQVEADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLD
                     IEGVKAKFGVRPDQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAS
                     EIKGKVGENLRAALPRLPLSYDLVTIKTDVDLHAELSDGIESLRRTTPKWAQLVVDFK
                     RWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAEMPSEKQAEKATVPERLDYQA
                     VTTEAQFAALLDKLAQADTIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLT
                     AAPEQLDLQYVLGRLKPHLGNPALKKIGQNLKYDQHVFANYGIALNGIAGDAMLASYI
                     IESHLGHGLDELSGRWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALR
                     LEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE
                     QQAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL
                     PKIILQNRSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVAITGRLASNNPNLQNIPI
                     RTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAA
                     EVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFIDRYFARYPG
                     VAEYMRRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQGTASDL
                     IKRAMIDVSHWLDSAGLKTKLIMQVHDELVLEVPEAELDLVKEKLPQIMAKVDEGMLK
                     VPLVAEVGVGENWEEAH"
BASE COUNT         2043 a         2251 c         2289 g         2121 t
ORIGIN      
        1 cccctaaaat ttttcgtttt caagccttca ccgcttgcca tcagcgttaa atttttttac
       61 gataagcaca tagattgtaa acaatcggcc acaagccggt ttgttttttc agaagacatt
      121 atccctgtca gacgctattt ctatatattt cgcctataac ggcttgtttt taataaataa
      181 ctcaagaggt atcaacgtgt ctgattccaa aacgaaagaa cgcgccacat tcggcacgcg
      241 ccgcgcgttt atgattgccg ccatcggatc cgccgtcggc ttgggcaata tttggcgttt
      301 cccctatatt gcttttgaaa acggcggcgg cgcgttcatc ctgccctatc tggtcgcgct
      361 tctgacggcg ggcatcccgc tgctgctgct cgattatgcc atcggccacc gttaccgtgg
      421 ttctgcgccc ttggctttcc gccgcctcgg acgatggttt gagccggtcg gctggtggaa
      481 cgtgatgacc aatatcgtca tctgcatcta ttacgcagtg attatcggtt gggcggcaag
      541 ctatacctat tattcggtca acgctgcctg gggtgcggat ccgcagggtt ttttctttaa
      601 ggacttcctg caaatgtcgg gcccggaagc cttgggtttg gattttgtcg gcaaagtggc
      661 cggtcctttg gcgggcgtgt gggtttttac cgccgccatt atggctttgg gcgtgcaaaa
      721 gggcgtggcg cgcgcctcgt cgttctttat gccgctgctt ttggtgatgt ttttgattat
      781 ggtcggcatt tcgctgacgt tgccgggcgc ggcaaagggc ttggacgcat tgtttacgcc
      841 cgactggtcg aaactcgccg attccaaggt ctgggtggcg gcatacgggc agattttctt
      901 ttcgctttcc atctgcttcg gcattatggt tacctattct tcttacttga agaagaaaac
      961 ggatttgggc ggcacgggct tggtggtcgg ttttgccaac agcagttttg agttgctcgc
     1021 gggcatcggt gtgtttgccg cattgggctt tatggcgcag gcgggcggta aggcggtcaa
     1081 cgaggttgcc tcaggcggca tcggtttggc gtttatcgcc tttccgacca ttatcaacca
     1141 ggcgccgatg ggctggctga ttggcatatt gtttttcggt tcgctggtat tcgccggcgt
     1201 tacgtcgatg atttccatcc ttgaagtgat tgtggcggcg attcaggaca agctgaacat
     1261 cgggcgcgtc aacgccacgc tgctggtctg cattccgatg ggcattgttt ccacgctgct
     1321 gttcggtacg gcgacggggc tgccggtttt ggacgtgatg gacaaattcg tcaacaccta
     1381 cggcattgtt gccgccggct ttgtttatgt tgccgccatc atcatcagcg gcaggctgcc
     1441 ggaattacgc aagcacctga acgctttgtc ctccatccgc atcggcggct tgtggacggt
     1501 ctgcgtcgtg gttaccgtcg tgatgctcgg ctatatgctg tttaaagata ccagcggcct
     1561 gatggagaaa aattacgaag gttatccgga tggtttcctc agtattttcg gctgggggat
     1621 gtcggcggcg ttggtcgtgt tcgggctgct gctgtcgttg ctgccttgga aacacggtca
     1681 ggatttcaac gtcaaagacg aacacgaaca tgaacaagga gaagaaaaat gagtacttcc
     1741 gccattgtga tgatgattgt ctcaatcgtg ataatctggg gagggctgct gctttccctg
     1801 ttaaggctgc cgaacgagta agcctttaga gcgttaaaaa tgccgtctga accgcttcag
     1861 acggcatttt gatgttcggc ttgcaggcag gcgagttcgt ttgccatttg ctgttctaag
     1921 gtttcgcgtc ggcggatgag tttgtatccg ccaccgttaa ccaacacttc cgccgcacgg
     1981 ttgcgcgcgt tgtaattgct cgccatactg gctccgtatg cgcccgcgct gcggataagc
     2041 agcaaatcgc cttcttcgca ggcgatggtg cggtctttgc cgaggaagtc gccggtttca
     2101 caaatcgggc cgacgatgtt ggcagtcagc ggcgcgatgt tttttggttc taccgcttcg
     2161 atgtgatgat aggcatcata tagggcgggg cgcattaaat cgttcatcgc cgcatcgacc
     2221 atcacaaagt ttttctcttc gccgtatttg acgaattcga cacgcgtcaa caacgcgcct
     2281 gcgttgccga ccaagctgcg gccgggctca agaatgagtt tcagacggcg tgtgccgatc
     2341 agtttttgaa ccgcttgggc atacgcgccc aaatcaggca ctttttcgtt ttggtaaaca
     2401 atgccgacgc cgccgcctaa gtccaaatgt tccaaaacaa tgccttcggc ggcaagcgcg
     2461 tcaaccaaaa tcaaaatgcg ttcgcaggct tcgaccagcg ggcttaagtc ggttagttgg
     2521 gagccgatgt ggcagtcgat gccgatgatt ttcaaattgg gctgttgtgc ggcatggcgg
     2581 taggcttcga gcgcgtcggc gtaggcgata ccgaatttgt tggctttcaa acctgtggag
     2641 atgtaaggat gggttttcgc atcgacatcg ggattgacgc gcagggagac gggcgcggtt
     2701 ttacccaaac gcgcggcaac tttctgaata cggtcgattt cggggatgct ttccatattg
     2761 aagcatttta cgccggcatt cagggcgaac tcgatttccg cctcgctttt gcctacgcct
     2821 gaaaatatgg tttttgctgc atcgccgcct gccgccaaaa cgcgtgccaa ctcaccgccg
     2881 gagacgatat cgaaaccgct gcccaacgag gcgaagtgtt tgataatgct cagattgcca
     2941 ttggctttga cggcatagca gacaagcggg ttcaaagcgg caaacgcggt ttggtagtgt
     3001 tcaaacgcct cggtcagcgc ggattggctg tacacataaa gcggcgtgcc gaatgcttcg
     3061 gcaaggcggg ggtaggggac ttgttcgcaa aacagggtca tatcttcgtt ttcattttcg
     3121 ggtttgtggg gcggattgcg gtttgctttg aagctgcaaa ccggtttgaa tcacgccgaa
     3181 gcgcgccttg tcgccttctt tgggcaggta gagatcgcct ttgtagccgc aggcagagag
     3241 cagcagagcc attgccgctg caaaaaatac gccgtatttc atcggtaaac ttccttcata
     3301 agcgcgaatg tggcaagatt cggtatctta aacaaaaacc acacaaaaag ccatgatgac
     3361 cgaaagcgag tttatccgcg cgagcgaagc attatttgaa cacatcgaag accaaatcga
     3421 cgaaaacggc tgggatttcg actgccggtt tgccggaaac gtactgacca tcgaagccga
     3481 aaacggcacg caaatcatcg tcaaccgcca cacgcccaac caagaattgt ggattgccgc
     3541 caaaagcggc ggctaccatt tcgccgagca aaacggcaaa tggctggcaa cgcgcgacag
     3601 ccgcgatttt tatgacgttt taaacgaagc cctgagcgcg gcttcgggcg aagcggtaaa
     3661 gattgccgaa ttgtaatttg agtgttatca cggaaagaaa aaatgaacac acgtcccttt
     3721 tatttcggac ttatatttat cgcgattatc gctatacttg ctaactattt aggaaacact
     3781 gatttttccc atcattatca tatcagtgct ttaattattg ctatcttgct gggaatggca
     3841 atcggcaata ccatttatcc gcaattttca acacaagtgg aaaaaggcgt tttgtttgcc
     3901 aaaggcgcgc ttcttcgcac tggcattgtg ctgtatggtt tccgcctcac ttttggcgat
     3961 attgccgatg taggattaaa tgctgtcgtt accgatgcaa tcatgctaat ttcaaccttc
     4021 ttttttaccg cacttttagg cattcgttat ctaaaaatgg ataaacaatt ggtttatctc
     4081 actggggcag gttgcagcat ttgcggtgcg gcagcggtga tggcggcaga gcctgttacc
     4141 aaagcagaat cccataaagt ttcagtggcg attgccgtag tggtcatttt cgggacgctt
     4201 gctattttta cttacccctt gttctacacg tggtcacaac atttaattaa cgcccatcaa
     4261 ttcggtattt atgttggttc tagtgtacac gaagtggctc aagtttatgc gattggggaa
     4321 aatattgatc ctatcgtggc gaatactgcc gtcatttcca aaatgatccg agtgatgatg
     4381 ctcgccccct ttttattaat gctttcttgg ttattaacac gtagtaatgg agtatcagaa
     4441 aatacatcac acaaaattac aattccttgg tttgctgtac tttttattgg tgttgccatt
     4501 tttaattctt ttgatttatt accaaaagaa ctcgtgaaat tattcgttga aatcgattct
     4561 ttcttattaa tttcatcaat ggctgcgctt ggcttaacga cgcaagcaag cgcaatcaaa
     4621 aaggcaggat taaaaccgtt tgttttagga atactaactt atttatggct agtggttggt
     4681 ggatttttag tgaactatgg aatatcaaaa ttaatataaa attcactaaa gagagcgtac
     4741 ccaatggcac aattaccgct atatctgact tctgaaatca aagactttac tgtcggcacg
     4801 cccgaagttt tacaatcatt tttcgaatat gtcccttatg gcgtcgtctt tgaagacgac
     4861 ggcgacacag gctacttcta tgccgcttcg caagacggga ttctagatgc cttgcacatc
     4921 tacaatgttg aagatgtatc cgacaaacat atccccaatt atgtcttgat tttatgggat
     4981 gatgcctgca ccatagccgc attgtgtatc aacgactaca ttcatgccgt ctatgatttt
     5041 gtcgcgcagg caggatattg ccgcaacggc ttccctgaag cacaaggcga atggctgaaa
     5101 gtcgcagacc gcgtcttgga cgatgaattg ttggacaaaa tcctatcccg aaaacctaca
     5161 taacccactc aaaaggataa caaaatgccc ctactagaca gtttcaaagt tgaccacacc
     5221 cgtatgcacg cccctgccgt acgcgtggca aaaactatga ccacgcccaa aggcgacacc
     5281 attaccgtgt ttgacctgcg tttctgcatt cccaacaaag aaatcctgcc cgaaaaaggc
     5341 atccacacgc tggagcattt gttcgccggt tttatgcgcg atcacttgaa cggcaacggc
     5401 gtggaaatca tcgacatttc cccgatgggc tgccgcaccg gtttttatat gagtttgatt
     5461 ggtacgcctt ccgagcagca ggttgccgat gcgtggctgg cttcgatgca ggatgtggcc
     5521 aatgtcaaag accaaagcaa aatccccgag ttgaacgaat accaatgcgg cacttaccaa
     5581 atgcactcgc tcgccgaagc gcaacaaatc gcgcaaaatg tgctggcgcg caaagtggcg
     5641 gtgaataaaa acgaagagct gacgctggac gaagggctgc tgaacgccta atccgccaaa
     5701 aatgccgtct gaacaagggt ttcagacggc atttgccttt tccgttataa tccggggttg
     5761 tgcggggtcg ggttttaagc cggcatcgtc cttccctatt tttttctgtc ccttatcggt
     5821 tttaagcggg ttttttatgt ccaacagacc tacactcctc ctcgttgacg gctcgtccta
     5881 cctctaccgt gcgtatcacg cgatggggca aaacctgacc gcccccgacg gcgcgccgac
     5941 gggtgcgctg tatggcgtat tgaatatgtt gcgccgtttg cggtcggaat atccgcacga
     6001 ttattgcgcg gtggtttttg atgcgaaagg caaaaatttc cgccatcaaa tgtttgaaga
     6061 atacaaggcg acgcgcccgc cgatgcccga cgatttgcgc ccgcaggcgg aagcactgcc
     6121 ggatttagtg cgcctgacag gctggccggt attggtgatt gggcaggtgg aggcggacga
     6181 tgtgatcggc acgctggcga aacagggggc ggaacatggt ttgcgagtca ttgtttcgac
     6241 cggcgataag gacatggcgc agttggtgga tgagcgcgtt acgctggtga acacgatgag
     6301 cagcgaaacg ctggacattg aaggcgtgaa ggcaaaattc ggcgtgcgcc ccgaccaaat
     6361 ccgcgattat ctcgcgctga tgggcgacaa ggtggacaac gtgccgggcg tggaaaaatg
     6421 cggcccgaaa acggcggtga aatggctgga agcctacggt tcgctggctg gtgtgatgga
     6481 acacgcttcg gaaatcaagg gcaaagtggg cgagaatctg cgtgccgccc tgccgcgcct
     6541 gccgctgtcg tatgacttag taacgattaa aaccgatgtg gacttgcacg ccgagctttc
     6601 agacggcatc gaaagcctgc gccgtactac gccgaaatgg gcgcagctgg ttgtcgattt
     6661 caaacgctgg ggcttccgca cctggctgaa agaagcggaa tcaaacatga ataccggctc
     6721 gaccgatgat ttgttcggca gcgacagcat cggcgagcag gcggctttga atgcggaaat
     6781 gccgtctgaa aaacaagctg aaaaagccac cgtccccgaa aggctggatt atcaagccgt
     6841 taccaccgaa gcgcagtttg ccgctttgtt ggacaaactg gctcaggcgg acacaatcgg
     6901 catcgatacg gaaaccacgt cattagacgc gatgaacgcc gcgctggtcg gcatcagcat
     6961 tgcgttccaa gcaggggagg cggtttacat ccccgtagga cacagcctga ccgccgcgcc
     7021 tgaacagctt gatttacaat acgtattagg ccgtctgaaa ccgcatttgg gaaaccccgc
     7081 cctgaaaaaa atcgggcaaa acctcaaata cgaccaacac gttttcgcta actacggcat
     7141 cgccctgaac ggcattgccg gcgacgccat gctcgcttcc tacatcatcg agagccatct
     7201 cggacacgga ttggacgaat tgtccggacg ctggctcggc ttggaaacca ttacctacga
     7261 atcgctgtgc ggcaaaggcg cgaagcaaat cggttttgcc gatgtcgcca tcgggcaggc
     7321 gaccgaatac gccgcccaag acgccgattt cgccctgcgc ctcgaagcgc acttgcgcgc
     7381 gcaaatggac gaaaaacagc ttgaaatgta tgaaaaaatg gagctgcccg tcgcgcaggt
     7441 attgtttgaa atggaacgca acggcgtgca aatcgaccgc gccgaactcg cccgccaaag
     7501 cgcggaactc ggcgccgagc tgatgaagct cgaacaacaa gcctatgccg ccgcaggcca
     7561 gccgttcaac ctcaattcgc ccaaacagct gcaagaaatc ctgttcgaca aaatgggcat
     7621 ccccaccaaa ggcctgaaaa aaaccgccaa aggcggcatt tccaccaacg aagccgtgct
     7681 cgaacagctc gcgcccgact accccctgcc caaaatcatc ctgcaaaacc gcagcctggc
     7741 gaaactcaaa tccacctaca ccgacaaact gcccgaaatg atttcgcccc gggataaccg
     7801 cgtgcatacc acctacgccc aagccgtcgc cattacagga cgcttggcaa gcaacaaccc
     7861 caacctgcaa aacatcccca tccgcaccgc cgaaggccgc cgtgtgcgcc gcgcctttac
     7921 cgcaccgcaa ggcagcgtca tcgtttccgc cgactattcc caaatcgagc tgcgcattat
     7981 ggcgcacctc tccggcgaca aaaccctcat cgccgcgttc caaaacggcg aagacgtaca
     8041 ccgccgcacc gccgccgaag tgttcggcac ggcgcccgaa aacgtctcgt ccgagcaacg
     8101 ccgctacgcc aaaaccatca acttcggctt aatttacggt atggggcaat acggtttggc
     8161 aaaatcattg ggcatcgaca acctttccgc caaaaacttt atcgaccgct acttcgcccg
     8221 ctaccccggc gtcgccgaat acatgcggcg caccaaagaa caagccgccg cccaaggcta
     8281 cgtcgaaacc ctgttcggca gaaggctcta tttgcccgac atccgcaaca aaaacgccaa
     8341 cgcccgcgca ggagccgagc gcgccgccat caatgccccc atgcaaggca ccgcgtccga
     8401 cctcatcaaa cgcgccatga tagacgtgtc ccattggttg gattcagccg gcctgaaaac
     8461 caaattgatt atgcaggtgc atgacgaatt ggtgttggaa gtacccgaag ccgagctgga
     8521 tttagtcaaa gaaaaactgc cgcagataat ggcgaaagtg gatgaaggga tgttgaaagt
     8581 gccgctggtg gctgaggttg gcgtagggga gaattgggaa gaggcacatt gattgaaagg
     8641 tgttatatgc tatctttatt taaataaaat ttaatttttg gtatattttt tctaaatgtt
     8701 ccta
//
LOCUS       DAXHPV010000080         8636 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.080, whole genome shotgun sequence.
ACCESSION   DAXHPV010000080 DAXHPV010000000
VERSION     DAXHPV010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8636)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8636)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8636
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.080"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(175..867)
                     /locus_tag="ACFM6C_001275"
     CDS             complement(175..867)
                     /locus_tag="ACFM6C_001275"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HFC6158730.1"
                     /translation="MKRFTYTLSDGLCIEIELKRSAKKNLILRPVNMQTVSINVPPFF
                     QDHALANWLAANETILRNTLAKTPVHPVSHPNLPEWIWYRGIKTKLDTHSQSHIRITS
                     SEILLPRKETAAQIDHLRRLLNERAREYLLPRLEKHAAETGLTPTATDLSNAKTFWGV
                     CRPHTGIRLNWRLIGTPEYVADYVCIHELCHLRHPDHSPRFWHLVNTLTPHTDNAKSW
                     LKAHGRELFVLG"
     gene            complement(975..2168)
                     /locus_tag="ACFM6C_001276"
     CDS             complement(975..2168)
                     /locus_tag="ACFM6C_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NRAMP family divalent metal transporter"
                     /protein_id="HFC6158731.1"
                     /translation="MSDQKNRRNALIGAAFLMATSAIGPGFLTQTATFTQALAASFGF
                     VILLSILLDIGAQLNIWRIVAVSEKQAQDIANQVLPGAGYFLAVLIVMGGLAFNIGNV
                     GGAGLGLNLLTGLSPETGAVISGVIAIGVFLFKEAGKVMDKFAQVMGFVMIALTVYVA
                     WQANPPLADAAVHTFMPEKLDAMAIVTLVGGTVGGYITFAGAHRLLDAGIKGKSALPE
                     VSQSSVRAILIASIMRIVLFLAVLGVVSQGVQLNPDNPASTPFEYAAGYIGLLIFGVV
                     IWAASITSVIGAAYTSVSFFSGLSPSIERNKNKWIIAFIAVSTAVFSTIGKPAQVLVF
                     VGALNGLILPISLGLILIAAYKTKIVGDYKHPLWLTVSGVIVVGLMAVLSAITISKYI
                     GGLFG"
     gene            complement(2297..3034)
                     /gene="pxpA"
                     /locus_tag="ACFM6C_001277"
     CDS             complement(2297..3034)
                     /gene="pxpA"
                     /locus_tag="ACFM6C_001277"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HFC6158732.1"
                     /translation="MKQVDLNADLAEGCGSDEALLQLITSANIACAQHAGSIADIRAA
                     LAYAQQNGVRIGAHPGYPDRENFGRTEMNLSEADLRACLNYQLGALQALCRDQGLEMA
                     YVKPHGAMYNQAAKNRALADTVARIVADFDPKLKLMALSGSLLLEAGKAAGLGVISEV
                     FADRRYMPDGTLVPRSRPDAQVDSDEEAIAQVLQMVRDGQVKAVDGSLVAVQADSICL
                     HGDGPHAVVFAEKIRQELLAAGIKVSA"
     gene            complement(3021..3950)
                     /locus_tag="ACFM6C_001278"
     CDS             complement(3021..3950)
                     /locus_tag="ACFM6C_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HFC6158733.1"
                     /translation="MIHVSAVQAPAHIQDTGRYGHRRYGIGHAGAMDTVALAAGNILL
                     GNDEGTAAIEIALGGIMLVFERDTPFCLTGAVYQAELDGEPVYSYWRYTARKGQTLKL
                     VRAVQGMYGYVCVAGGFDVPEVMGSRSTDLKAGFGGHQGRMLQKGDYLPIGKGAQELS
                     KVGIAPIPFTDTVHLVPSSEYAAFSEKGRLNLERETWTLQSDSNRMGYRFDGQPLTLS
                     QPLEMLSHAVQAGTVQVPPGGKPIILLADAQTTGGYPKIATVAAADLGRLAQVRFGSK
                     VKFKIIGLKEATALRRKNQAYLNQIRRITHEAG"
     gene            complement(3947..4594)
                     /gene="pxpB"
                     /locus_tag="ACFM6C_001279"
     CDS             complement(3947..4594)
                     /gene="pxpB"
                     /locus_tag="ACFM6C_001279"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing)
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HFC6158734.1"
                     /translation="MRIEITPISESALVCRLNAPSELGKQQKLWAFAAALGQHDRIEE
                     VVVGMNNLTVFTRFDTDLATLADELQYVWEHTAVTDHQGKLVEIPVCYGGEYGPDLAE
                     VAAFHQTVISEIVRRHTAQTYTVFMMGFQPGFPYLGGLPEALHTPRRAVPRTSVPAGS
                     VGIGGSQTGVYPFASPGGWQIIGRTELPLFRADLNPPTLLAAGDQVRFVAERIEP"
     gene            4778..6985
                     /gene="uvrD"
                     /locus_tag="ACFM6C_001280"
     CDS             4778..6985
                     /gene="uvrD"
                     /locus_tag="ACFM6C_001280"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006268 - DNA unwinding involved in DNA
                     replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HFC6158735.1"
                     /translation="MFPDQSAPNLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLT
                     TRIAWLLQSGQASVHSIMAVTFTNKAAKEMQTRLGAMIPINVRAMWLGTFHGLCHRFL
                     RLHHRDAGLPSSFQILDGGDQLSLIKRLLKSLNIAEEIIAPRSLQGFINAQKESGLRA
                     SVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEMLQSNEILRQHYQNRFN
                     HILVDEFQDTNKLQYAWLKLIAGNHAAVFAVGDDDQSIYRFRGANVGNMTALMEEFHI
                     DAPVKLEQNYRSVGNILAAANAVIENNDERLGKNLRTDAEAGDKIRYYSAFTDLEEAQ
                     FIVDETKALEREGWDLDEIAVLYRSNAQSRVIEQSLFRSGIPYKIYGGVRFYERQEIK
                     HALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAK
                     AAKVVAFVRLIEALRNQVGQMPLPEIIVGILKDSGLTEHYRTQKSDNQDRLDNLDELV
                     NAAIEFKPEDSNFETLPENISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHA
                     AKGLEFNAVFLTGMEEGRFPSEMSLAERGGLEEERRLMYVAITRARKRLYITMAQQRM
                     LHGQTQFGIVSRFVEEIPPEVLHYLSVKKTAYDSYGSPRQTAASKDKIIDDYKQPQTY
                     AGFRIGQNVRHAKFGTGVIIDAADKGESARLTINFGKQGVKELDTKFAKLEEM"
     gene            7218..7730
                     /locus_tag="ACFM6C_001281"
     CDS             7218..7730
                     /locus_tag="ACFM6C_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042546 - cell wall biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HFC6158736.1"
                     /translation="MSQVFKDFDLSSVWKTNSWADENYKEAPFTPEILAAVESELGYK
                     LPQSFIALIAVQNGGMFVKNCFPTTQRNSWAKDHVQICEVSGIGFEKEGSLCGETGQK
                     LWLEEWEYPPIGVYFANDPSGGHALFALDYRECGKNGEPKVVFVELAPDFETFIRSLR
                     HEDEFIDEEI"
     gene            complement(7920..8135)
                     /locus_tag="ACFM6C_001282"
     CDS             complement(7920..8135)
                     /locus_tag="ACFM6C_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158737.1"
                     /translation="MNIINYTGDDIIISLTREELQLLRSLVIEIYAGVCIDAEEFEIV
                     SGIRNPQLVQELEQHLIEAYNLMDTTG"
     gene            complement(8259..8618)
                     /locus_tag="ACFM6C_001283"
     CDS             complement(8259..8618)
                     /locus_tag="ACFM6C_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 8 family protein"
                     /protein_id="HFC6158738.1"
                     /translation="MIKLDLKSINLYDIDFEKFTPEIPDNFHRWIDLDIGIEGEQGSS
                     IFSLCICSPKWISHHCNKEGFFWSNALILEQFDHKIIKSEIDKILEYCSKETWDLTLS
                     NLLRFFSWEFEDYNPNT"
BASE COUNT         2144 a         2413 c         2155 g         1924 t
ORIGIN      
        1 cctctttcag ttacagcagc ttgatccctt tcccttatcc aacgggggaa ggctaggata
       61 gggtggcttg caaatataca gaacaaggga caagagccac cctctctcca accctctccc
      121 tccgtacggg agggggtgga ttctcgcggg cgaagcccac gctacggtta gcctttaccc
      181 cagcacaaac aattcccgcc cgtgcgcctt cagccaactt ttagcattgt cggtatgcgg
      241 cgtcagcgtg ttcaccaaat gccaaaagcg cggactgtgg tcggggtggc ggaggtggca
      301 gagttcgtgg atgcagacat agtcggcgac gtattcgggc gtgccgatca gccgccagtt
      361 gaggcggatg ccggtgtgcg ggcggcatac gccccaaaag gttttggcgt tgctcaggtc
      421 tgtggcggtg ggcgtcagtc ctgtttcggc tgcgtgtttt tcaaggcggg gcagcaggta
      481 ttcgcgggcg cgttcgttca acaggcggcg caggtggtcg atttgtgcgg cggtttcttt
      541 tcggggaagc aggatttcag acgacgtgat acggatatgg ctttggctgt gggtatccag
      601 cttggtcttt attccccgat accaaatcca ctcgggtaag tttgggtggg aaacaggatg
      661 cacgggcgtt ttggcaagcg tgttccgcaa aatcgtttcg tttgccgcca gccagtttgc
      721 taacgcgtgg tcttgaaaaa agggtgggac gttgatgctg accgtctgca tattgacggg
      781 gcgcagaatc agatttttct tggcactgcg tttgagttcg atttcgatgc acaaaccgtc
      841 ggaaagagta taggtgaagc gtttcatagt tgtgaatagg tttcagaccg gatacatcgt
      901 ctgaaacagg aattttccat atcaggcggc aaacttcgga taatatacaa aatcaaacat
      961 ctgcgctaca aggttcagcc gaacaagccg ccgatatatt tgctgatggt gatggcgctg
     1021 agtactgcca tcaaaccgac cacaatcacg ccggaaacgg tgagccacag cgggtgtttg
     1081 tagtcgccga caattttggt tttgtaggcg gcaatcagaa tcagaccgag ggaaatcggt
     1141 aaaatcaggc cgtttaatgc gcctacgaac accagcacct gcgccggttt gccgatggtg
     1201 gaaaatacgg cggtggacac ggcgataaag gcaataatcc atttgttttt attgcgttcg
     1261 atagacgggc tgagaccgga gaagaacgac accgaagtat aagccgcacc aatcaccgaa
     1321 gtaatcgaag ccgcccaaat caccacgccg aaaatcagca ggccgatgta tcccgccgca
     1381 tattcaaacg gtgtggaagc agggttgtcg ggattgagct gtacgccttg gctgaccacg
     1441 cccaaaaccg ccaaaaacaa tacaatccgc ataatcgagg caatcaggat cgcccgcacc
     1501 gagctttggc tcacttccgg caacgccgat ttgcctttga tacctgcgtc cagcagacgg
     1561 tgcgcaccgg cgaaggtgat gtagccgccg accgtgccgc ccaccagtgt aacaatcgcc
     1621 attgcatcga gtttttccgg cataaaggta tgcacggcgg catctgccag cggcggattc
     1681 gcctgccatg ccacataaac cgtcagcgca atcattacga aacccatcac ttgggcgaat
     1741 ttgtccatca ctttgcctgc ttctttaaac agaaacacac cgatggcaat cacgccgctg
     1801 atcacggcac cggtttccgg tgacagtccg gtcagcaggt tcagacccaa gcctgcgccg
     1861 ccgacgttgc caatattgaa cgccaaaccg cccatcacaa tcagcacagc caagaaatag
     1921 cctgcgccgg gcaagacctg attggcaata tcctgcgcct gtttttcgga aacggcgaca
     1981 atccgccaaa tattgagctg cgccccgatg tcgagcagaa tcgagagcag aatcacaaag
     2041 ccgaaacttg ccgccagtgc ttgggtgaag gtggcggttt gggtcagaaa gcccgggccg
     2101 atggcggaag tcgccatcag gaatgcagcg ccgattaagg catttctgcg gtttttttga
     2161 tcagacataa tcgcttatcc tctataaaat tggttgttgc tgtgtttggg cgaaacctgc
     2221 ggttttagct acgcagaaac tcgctttgct cgttttggcg aaacctgcgg ttttcagacg
     2281 gcctatgaac tgtttttcaa gcagaaactt tgatgcctgc cgccagtagt tcctgccgga
     2341 ttttttcggc aaacaccacg gcgtgcggcc cgtctccgtg cagacagatg ctgtcggctt
     2401 gcacggcaac caggctgccg tccactgctt tgacctgccc gtcccgcacc atctgcaata
     2461 cttgggcgat ggcttcttcg tcgctgtcca cctgcgcatc ggggcggctg cggggaacca
     2521 gcgtaccgtc gggcatatag cggcggtcgg cgaatacttc agaaatcaca cccaagcctg
     2581 cggcttttcc ggcttccaag agcaggctgc cggaaagtgc catcaatttc aatttcgggt
     2641 cgaaatccgc cacaattcgg gcaacggtat ccgccagcgc acggtttttc gccgcttgat
     2701 tgtacattgc gccgtgcggt ttgacataag ccatttccaa accctgatca cggcacaagg
     2761 cctgcaatgc gcccaactgg taattcagac acgcccgcaa atcggcttcg gacagattca
     2821 tttcggtacg gccgaagttt tcccgatcgg gatagccggg gtgtgctccg atgcgcacgc
     2881 cgttttgttg ggcatacgcc aatgccgccc gaatatcggc aatgctgccg gcgtgttggg
     2941 cgcaggcgat gttggccgaa gtaatcagct gcaacaaggc ttcgtcgctg ccgcagcctt
     3001 cggcgagatc ggcgtttaaa tcaacctgct tcatgggtga ttctccgtat ttggttcaga
     3061 taggcttggt ttttgcgccg cagggcggtg gcttctttca agccgattat tttgaatttg
     3121 actttgctgc cgaagcgcac ctgtgccagc ctgcccaaat cggcggcggc aacggtagcg
     3181 attttcggat aaccgccggt ggtttgcgca tcggccagca ggataatcgg tttgccgccg
     3241 ggcggcacct gcacggttcc tgcctgaaca gcgtgggaca gcatttccaa aggttgcgac
     3301 agggtcagcg gctgtccgtc gaagcggtag cccatgcggt tgctatcgct ttgcagcgtc
     3361 cacgtttccc gttccagatt cagacgccct ttttcactga aagcggcata ttccgacgaa
     3421 ggaacaaggt ggacggtatc ggtaaacggt atcggggcaa tgccgacttt ggacaattcc
     3481 tgcgcacctt tgccgatggg gagataatcg cctttttgca gcattctgcc ctgatggccg
     3541 ccgaaaccgg ctttcaggtc ggtgcttctc gaacccatca cttccggcac atcaaatccg
     3601 cccgccacgc acacatagcc gtacatgccc tgcacggcac gcaccagttt caaggtctgc
     3661 cctttgcggg cggtataacg ccaatacgaa tagaccggtt cgccgtccaa ttccgcctga
     3721 tacacggcac cggtgagaca aaacggcgta tcccgttcaa acaccagcat tatcccgccc
     3781 aaagcgattt cgattgcggc cgtgccttcg tcgttgccca ataaaatatt gcccgccgcc
     3841 aaagcaaccg tgtccatcgc accggcatga ccgatgccgt aacgccggtg tccgtagcgt
     3901 ccggtatcct gaatatgcgc cggtgcctgc actgccgaaa cgtgaatcat ggctcaatcc
     3961 tttctgcaac aaagcggact tggtcacccg ccgccagcag ggtcggcgga ttcaaatcgg
     4021 ctcggaacaa gggtaattcg gttctgccga taatctgcca gccgccgggc gaagcgaacg
     4081 gatacacacc ggtctgactg ccgccgatac cgaccgaacc ggcaggaacg gacgttctcg
     4141 gcacggcacg gcggggcgtg tgcaatgctt cgggcaagcc gcccagataa gggaaaccgg
     4201 gctggaagcc catcataaat acggtataag tttgcgccgt atggcggcgg acgatttcgg
     4261 aaataaccgt ctgatggaaa gcagcgactt ccgccaaatc cgggccgtat tcgccgccgt
     4321 agcagacggg aatttccacc agtttgccct gatggtctgt aacggcggtg tgttcccaca
     4381 catattgcaa ttcatcggca agcgtcgcca aatcggtatc gaaacgggta aacacggtca
     4441 gattgttcat gccgaccacc acttcctcaa tcctgtcgtg ctgcccgagc gcagcggcaa
     4501 acgcccacaa cttttgctgt ttgcccagtt cggaaggcgc attcagtcgg cagaccaaag
     4561 cggattcgct gattggtgtg atctctattc tcatttgttg ttcattttgg ttatgtttta
     4621 atgaatctat atgcaggggc ggcggtttgt caatatcttc tgtgctgcat catcaaaccg
     4681 tcgattggaa aagtgctgcc ctgccgctgc actttttcag acgaccttaa accgtttcta
     4741 ttaaaatagc gcattccact tttcagacgg catccttatg tttcccgacc aatccgcccc
     4801 caacctgctg caaggcttga atcccgaaca actctccgcc gtaacctggc cgccgcaatc
     4861 cgcacttgtg ctggcgggcg cgggcagcgg caaaacgcgc gtgctgacca cgcgcatcgc
     4921 atggctgttg caaagcggac aagccagcgt gcacagcatt atggcggtaa cgtttaccaa
     4981 caaagccgcc aaagaaatgc aaacccgttt gggcgcgatg attcccatca atgtccgcgc
     5041 catgtggctc ggcacgttcc acggtctctg ccaccgcttt ttgcgcctgc accaccgcga
     5101 cgccggtctg ccgtcttcct ttcaaatcct cgacggcggc gaccagcttt ccctgatcaa
     5161 acgcctgctc aaaagcctca acatcgccga agaaatcatc gcgccgcgtt cgctgcaagg
     5221 ctttatcaat gcgcaaaaag aatccggttt gcgcgcttcc gtgttgagcg cgcccgatcc
     5281 gcacacgcgc cgcatgattg agtgctacgc cgaatacgac aaaatctgcc aacgcgaagg
     5341 cgtggttgat ttcgccgaac tgatgctccg cagctacgaa atgctgcaaa gcaacgaaat
     5401 cctgcgccaa cactaccaaa accgcttcaa ccacattctc gttgacgagt tccaagacac
     5461 caacaaactg caatacgctt ggctgaaact gattgccggc aaccacgccg ccgtctttgc
     5521 cgtcggcgac gacgaccaaa gcatctaccg gttccgtggc gcgaacgtcg gcaatatgac
     5581 cgcgctgatg gaagagttcc acatcgacgc gcccgtcaaa ctcgaacaaa actaccgctc
     5641 cgtcggcaat atccttgccg ccgccaacgc cgtgattgaa aacaacgacg aacgcctcgg
     5701 caaaaacctg cgtaccgacg ccgaagcagg cgacaaaatc cgctactact ccgcctttac
     5761 cgaccttgaa gaagcccaat tcatcgtgga cgaaaccaaa gcccttgaac gcgaaggctg
     5821 ggatttggac gaaatcgccg tcctctaccg cagcaacgcc caatcgcgcg tcatcgaaca
     5881 aagcctgttc cgcagcggca tcccctacaa aatctacggc ggggtgcgct tttacgaacg
     5941 ccaagaaatc aaacacgcgc tcgcctacct gcgcctcgcc gtcaatcccg atgacgacaa
     6001 cgccctcttg cgcgtcatca acttcccacc gcgcggcatc ggcgcgcgca ccgtcgaaaa
     6061 tcttcagacg gcctcaaacg aacaaggcat taccctctgg caagccgcct gcaacgccgg
     6121 cgcgaaagcc gccaaagtcg tcgccttcgt ccgcctgatt gaagccctgc gcaaccaagt
     6181 cggacaaatg cccctgcccg aaatcatcgt cggcatcctc aaagacagtg gcctgaccga
     6241 acactaccga acccaaaaaa gcgacaacca agaccgcctc gacaacctag acgaactcgt
     6301 caacgccgcc atcgagttca aacccgaaga cagcaacttt gaaaccctgc ctgaaaacat
     6361 ttcagacgac cccgccttcc ccatcctcgc tttcttgagc aacgccgccc tcgaatccgg
     6421 cgaaaaccaa gcaggcgcag gcgaaaaagc cgtccaactc atgaccgtcc acgccgccaa
     6481 aggcttggaa ttcaacgccg tcttcctcac cggcatggaa gaaggccgct tccccagtga
     6541 aatgagcctt gccgaacgcg gcggcctcga agaagaacgc cgcctgatgt acgtcgccat
     6601 cacccgcgcc cgcaaacgcc tctacattac gatggcgcaa caacgaatgc tgcacggaca
     6661 aacccaattc ggcatcgtct cccgcttcgt cgaagaaatc ccacccgaag tattgcacta
     6721 cctgtccgtc aaaaagaccg cctacgacag ctacggcagc ccgcgccaaa ccgccgcgtc
     6781 caaagacaaa atcatcgacg actacaaaca gccccaaacc tacgcaggct tccgtatcgg
     6841 acaaaacgtc cgccacgcca aattcggcac cggcgtgatt atcgatgccg cagacaaagg
     6901 cgaatccgcc cgactgacca tcaatttcgg caaacagggc gtgaaagagt tggataccaa
     6961 gtttgcgaaa ctggaagaga tgtagaaggg agatggcaga gaccgtctga aaacgggaac
     7021 aacaattttt gcccaaacct ccgccgtcat tcccgcgcag gcgggaatcc ggacctttcg
     7081 gcacggaaac ttatcggata aaaggtttct ttagattcca cgtcctagat tcccgccgga
     7141 acataaatga cggacggtaa aagccgggta tgaataccca ccctctgtta tcactgagat
     7201 caataaggaa gaacattatg tcccaagttt ttaaagattt tgacttgtcc tccgtatgga
     7261 aaactaatag ttgggcagat gaaaactaca aagaagcccc gtttacccct gaaattttgg
     7321 ctgccgtaga aagtgagcta ggctataaat tgccgcaaag ttttattgca ttgatagcag
     7381 tacaaaacgg cgggatgttt gtcaaaaact gctttccgac cacacagaga aattcgtggg
     7441 cgaaagatca tgtgcaaatt tgcgaggtat cgggaatcgg ttttgaaaaa gaaggaagcc
     7501 tgtgcggcga aacagggcaa aaactttggc tggaagaatg ggagtatccg cccatcggcg
     7561 tgtattttgc caacgacccg tcaggcggtc atgccctgtt tgccttggac tatcgggagt
     7621 gcggcaaaaa cggagagccg aaagtggtgt ttgtcgaact cgcccccgat tttgaaacct
     7681 ttatccgcag cttgcggcat gaagatgagt ttattgacga agaaatataa aacggcggtt
     7741 gaaaaactga aatcattaag tgaaaacggg cgaaataacg ggtaaccgtt tgaatccgta
     7801 agggaaacag ttcggcggaa cgtgccatcc aagacctttg caaagaaaaa ctgtccccga
     7861 cagcattgac attattaaca gaacttatca aatttggagc tatcccaaat ataattcggt
     7921 tatcctgttg tatccattag attatatgct tcaattaaat gttgttctag ctcttgcact
     7981 aattgaggat tgcgaattcc tgatacaatc tcaaattctt ctgcatctat gcaaacacct
     8041 gcataaattt caataacaag ggaacgcaat aattgaagct cttctcttgt taaagaaata
     8101 ataatgtcat cacctgtgta attgattata ttcataataa ttttattttt gcttgtcaaa
     8161 gtaagtttta cctaaggttg gtctaaatgc agtcccacca tcttttgaat ttgggtctct
     8221 aattacaatt gctccagact tatcatccca aattgctctt atgtgtttgg attgtaatct
     8281 tcgaattccc aagaaaaaaa tcgtaataag tttgaaagtg tcaaatccca agtttctttt
     8341 gagcaatatt ctaatatttt atcaatttca cttttaataa tcttatgatc aaactgttct
     8401 aatattaatg cattagacca aaaaaaacct tctttattac aatgatggga aatccattta
     8461 ggagaacaaa tgcaaagtga aaaaatagat gagccttgtt ctccttcgat tccgatatcc
     8521 aaatctatcc atctatggaa attatctgga atttcggggg taaatttttc aaaatcaata
     8581 tcatataaat ttatgctttt taaatccaat ttaatcatta gggctgtcct agataa
//
LOCUS       DAXHPV010000081         8629 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.081, whole genome shotgun sequence.
ACCESSION   DAXHPV010000081 DAXHPV010000000
VERSION     DAXHPV010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8629)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8629)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8629
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.081"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(1..182)
                     /locus_tag="ACFM6C_001284"
                     /pseudo
     CDS             complement(1..182)
                     /locus_tag="ACFM6C_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678130.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
     gene            328..1032
                     /locus_tag="ACFM6C_001285"
     CDS             328..1032
                     /locus_tag="ACFM6C_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248833.1"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HFC6158739.1"
                     /translation="MLRSILAASLLAVSFPTAAEALNYNIVEFSESAGVEAVQDTMSA
                     RFQVAAEGRDKNAVNAEFVKKFNSFNRKSKNGSFKTELVSRSAMPRYQYTNGRRIQTG
                     WEERAEFKVEGRDFDALNRFIADVQTDASLEYTDFSVSRERRNEVIDQVSKDAILRFK
                     TRAEKLAGILGASGYKIVKLNLGHIGSHIAGGGAAQAKMLRAMPMAASVNMEGADSAA
                     QGVEEISISVNGTVQF"
     gene            complement(1096..1662)
                     /gene="dcd"
                     /locus_tag="ACFM6C_001286"
     CDS             complement(1096..1662)
                     /gene="dcd"
                     /locus_tag="ACFM6C_001286"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003823864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0006229 - dUTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HFC6158740.1"
                     /translation="MSIKSDKWIRRMSEEFGMIDPFEPNQIKEADGKRIISYGTSSYG
                     YDIRCANEFKIFTNINSTIVDPKNFDPKNFVTVEDDCCIIPPNSFALARTVEYFRIPR
                     NVLTVCLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGVAQVLFF
                     ESDEICETSYKDRNGKYMGQTGVTLPKA"
     gene            complement(1728..2144)
                     /locus_tag="ACFM6C_001287"
     CDS             complement(1728..2144)
                     /locus_tag="ACFM6C_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MORN repeat-containing protein"
                     /protein_id="HFC6158741.1"
                     /translation="MLKHLAFLLPAMMFALPTSAAVLTSYQEPGCTYDGGVGKDGLPS
                     GKGIWRCRDGRGYTGSFKNGKFDGQGVYTVAANREIFIEPFNSDSTKFRNMVLSGTFK
                     KGLAHGRFTVSQNGETLFIMKCENGMIKEVKLPKNK"
     gene            complement(2206..3105)
                     /locus_tag="ACFM6C_001288"
     CDS             complement(2206..3105)
                     /locus_tag="ACFM6C_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HFC6158742.1"
                     /translation="MWFKQISFYPLNKEKLPEADILADKLAEAEFTHCQGLDWFSEGF
                     TAPVSFSPELVFPADFTLRVALKKEEKVLPAGVIRDILEEKVAEIQNNEARNIGRKEK
                     QELKEQITDDLLPRAFTRSSRTEAVFNTRHGYLLVNNAASAKAENILTKLREALGGLE
                     ASLPNTKQSPSSLMTGWLLQGHCEGGFELDSDCELKGTGDIVPVVKVSKQDLTADEVV
                     QHVKNGKTVTQLGLVWREQIAFILTQDFTLKRIQYLDVLQEEAESNGDDAAGLAFASQ
                     ILMAESVSTMLEELVSYLGGWQD"
     gene            complement(3136..4593)
                     /gene="der"
                     /locus_tag="ACFM6C_001289"
     CDS             complement(3136..4593)
                     /gene="der"
                     /locus_tag="ACFM6C_001289"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003745900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HFC6158743.1"
                     /translation="MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGH
                     GKVGSKPYLVIDTGGFEPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKI
                     IADRLRQSPRPVYLAVNKGEGGNRAVLAAEFYELALGDPYVISGAHGDGVYYLIEEIL
                     ENFPEPEVEEADAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDF
                     EREGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDA
                     TIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI
                     DGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGMNPPV
                     IVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPYENAEDKPKKKPLR
                     RVSLSNRIEKREGRKEEKNRFKKKTKVSVKKQFSK"
     gene            complement(4743..5372)
                     /locus_tag="ACFM6C_001290"
     CDS             complement(4743..5372)
                     /locus_tag="ACFM6C_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfgM family protein"
                     /protein_id="HFC6158744.1"
                     /translation="MAAHLEEQQELDNFKYFWKTTGKWLFALLILAALGYLGYTVYQN
                     RAASQNQEAAAVLANIVEKAQNKAPQSEINAELTKLQQSYPHSISAAQATLMAAATEF
                     DAQRYDVAEGHLKWVLSNQKDSLIQALAAQRLGVVLLQQKKYDAALAALDTPVEADFS
                     PLLMETKGDVYAAQGKSQEALKNYGQALEKMPQDSVGRELVQMKLDSLK"
     gene            complement(5373..6668)
                     /gene="hisS"
                     /locus_tag="ACFM6C_001291"
     CDS             complement(5373..6668)
                     /gene="hisS"
                     /locus_tag="ACFM6C_001291"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HFC6158745.1"
                     /translation="MAQKIQSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVNRWTRAYG
                     YQQIRTPIVEQTGLFVRSIGEETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVE
                     HNLLYNSPQKLWYMGPMFRRERPQKGRYRQFHQVGIEALGFEGPDIDAEIIAMSADLW
                     EKLGIREYLTLEINSLGNREERAAHRAALVEYLTRYEDKLDEDSKRRLKTNPLRVLDT
                     KNPDLQEICNAAPRLVDYLGEASQNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTV
                     FEWTTDKLGAQATVCGGGRYDGLIEELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNA
                     APDVYAMHQGERADLQVMKYAQALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIV
                     AQDELANGTVTLKDMNGAHGQQTVAAEDLTHTLQQWKNA"
     gene            complement(6786..7442)
                     /locus_tag="ACFM6C_001292"
     CDS             complement(6786..7442)
                     /locus_tag="ACFM6C_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HFC6158746.1"
                     /translation="MMKFKYVFLLACVVVSLSYRLNAAPMFNDNPVVYGKIKVQSWKE
                     RRDFNIVKQDLDFSCGAASVATLLNNFYGQTLTEEEVLKKLDKEQMRASFEDMRRIMP
                     DLGFEAKGYALSFEQLAQLKIPVIVYLKYRKDDHFSVLRGIDGNTVLLADPSLGHVSM
                     SRAQFLEAWQTREGNLAGKILAVVPKKAETISNKLFFTHHPKRQTEFAVEQIRQARAE
                     "
     gene            complement(7500..7691)
                     /locus_tag="ACFM6C_001293"
     CDS             complement(7500..7691)
                     /locus_tag="ACFM6C_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158747.1"
                     /translation="MLPTRSVSSLLLGEYLEFEENGTKIAAEIDSAWHFLGAACRISI
                     NGKYYAGNRIVWFAKKAES"
     gene            complement(7724..8260)
                     /locus_tag="ACFM6C_001294"
     CDS             complement(7724..8260)
                     /locus_tag="ACFM6C_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158748.1"
                     /translation="MKKIIDSKVRETNFNQAWRVIRAMQIDNISDEQVVIVRMSCYLK
                     KDEIFKNIERYGYQSSDIKKISPPFPLNILPVPKPYYFYLYDTHLNQIYDLAWSCNDF
                     LMFEIFILDRESIKYIDKDKLFKSGETLYSNFKSIKNQCKNYFFCGFDFDAPYFKSGV
                     SQVADYNFVPDAFSLFFI"
     gene            complement(8428..>8629)
                     /locus_tag="ACFM6C_001295"
     CDS             complement(8428..>8629)
                     /locus_tag="ACFM6C_001295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158749.1"
                     /translation="MQLICADWTGIGNFMKTFEKTWSAQYRDMEISVRNFWNLERTGA
                     EVYINGRRVYHNEAEMASASLR"
BASE COUNT         2065 a         2068 c         2133 g         2363 t
ORIGIN      
        1 tgcaaaaccg taagggtcgg tcaggatgct tgctgtttct ttccgcaagt agcggaacat
       61 cggtgcaagc acggcggttt tgatgccttt cctctggaat gccagtgcct gattttgaaa
      121 aaaatcccgt ccacatcctg ttcggattgc ggataccatg aggggatgac gaggacgtgc
      181 aagggttcgg gcatagtggg attccgtatc ggaaaggcgg ttattataag acagacgcag
      241 accgaatatt taaattgttg ccttacgcta atgcaattta gcgcgccgat atgctagatt
      301 ggcggtttta tgagtgagga tacggatatg ttgcgttcta ttttggcggc ttccctattg
      361 gcggtatctt ttccgacggc ggctgaagca ttgaattaca atattgtcga attttctgaa
      421 tcggccggtg tcgaggcggt tcaggataca atgtccgcgc gtttccaggt ggcggcggaa
      481 ggacgggaca aaaatgccgt caatgccgag tttgttaaaa aattcaacag ttttaacaga
      541 aaatcgaaaa acggcagctt taaaaccgaa ttggtatcgc gcagtgcgat gccgcgctac
      601 cagtacacca acggcagacg cattcaaaca ggctgggagg agcgtgcgga atttaaggtc
      661 gaaggtaggg attttgatgc gttgaaccgt tttattgctg atgttcagac ggatgcttcg
      721 cttgaatata ccgatttcag cgtgtcgcgt gaacgccgaa acgaggtcat cgatcaggtc
      781 agcaaggatg ctattttgcg ttttaagacg cgtgccgaaa aactggcggg cattttgggt
      841 gcgtccggtt ataaaatcgt caaattaaat ttgggacaca tcggcagcca tatcgcggga
      901 gggggagctg ctcaggcaaa aatgcttcgt gccatgccga tggcggcaag cgtcaatatg
      961 gagggtgcgg attctgccgc gcagggtgtg gaggaaatca gcatcagcgt caatgggacg
     1021 gttcagttct aaccacggat aaacaggtag atgccgtctg aaaccggatg atacggttca
     1081 gacggcattt atatttcagg ctttaggcag ggtaacgccg gtttgcccca tatatttgcc
     1141 gttgcggtct ttgtaggaag tttcgcagat ttcgtcgctc tcgaaaaaca ggacttgcgc
     1201 cacgccttcg cctgcgtaga ttttggcggg caggggggtg gtgttggaaa attcgagggt
     1261 aacgtagcct tcccattccg gttcgaacgg ggtaacgttg acgataatgc cgcagcgggc
     1321 gtaggtggat ttgcccaagc agacggtcag gacgttgcgc gggatgcgga aatattcgac
     1381 cgtgcgcgcc agtgcgaagg aattgggcgg gatgatgcag cagtcgtctt caacggtaac
     1441 gaagtttttc gggtcgaagt ttttgggatc gacgatggtg ctgttgatgt tggtgaagat
     1501 tttaaattcg tttgcgcagc ggatgtcgta gccgtagctg gacgtaccgt aggagatgat
     1561 gcgtttgccg tcggcttctt tgatttggtt cggctcgaaa gggtcgatca tgccgaattc
     1621 ttcgctcatt cggcgtatcc atttgtcgga cttgatgctc ataatgtttt ccttgtttct
     1681 tgcagtgttc ggacaaagca ttgggggatg ccgtctgaaa acggggctta tttgtttttg
     1741 ggcagcttca cttctttaat catgccgttt tcgcatttca taatgaagag ggtttcgccg
     1801 ttttgcgaga cggtaaatct gccgtgtgcc aagccttttt tgaacgtgcc cgagagtacc
     1861 atgttgcgga atttggtact gtcggaattg aacggttcga taaatatttc gcggttggcg
     1921 gcaacggtat aaacgccttg tccgtcgaat ttgccatttt taaacgaacc ggtataaccg
     1981 cgcccgtccc ggcaacgcca tatgcctttg cctgaaggaa gcccgtcttt tccgactccg
     2041 ccgtcgtagg tgcagccggg ttcttgatag gaagtcagaa cggcggccga agtggggagg
     2101 gcgaacatca tggcgggcag taggaatgcg agatgtttaa gcataagggt tattccattg
     2161 gattttggtt gacggtattt tgtcgtgaaa aagccgtctg aaaaatcaat cttgccagcc
     2221 gcccaaatag gaaaccagtt cttccaacat ggtgctgacg gattccgcca tcagaatttg
     2281 cgaggcgaag gcaaggccgg cggcatcgtc gccgttgctt tcggcttctt cctgcaatac
     2341 gtcgaggtat tggatgcgct tgagtgtgaa gtcttgagtg aggataaagg caatttgttc
     2401 gcgccacacc aagcccagtt gggtaacggt tttaccgttt ttgacgtgtt gaaccacttc
     2461 gtcggcggtt aaatcttgtt tggatacttt gacgacggga acaatatcgc ccgtaccttt
     2521 gagttcgcaa tcgctgtcta attcaaaacc gccttcgcaa tgcccttgca acagccagcc
     2581 ggtcatcaag gaagagggcg attgcttggt attcggcagc gaggcttcca aaccgcccaa
     2641 agcttcgcgc agcttggtca ggatgttttc cgctttggcg gaagccgcgt tattgacgag
     2701 caggtagccg tggcgggtgt taaacactgc ttctgtacgg ctgctgcggg taaacgctcg
     2761 gggcagcagg tcgtctgtaa tttgctcttt aagctcttgt ttttctttgc ggccgatatt
     2821 gcgtgcctca ttgttttgga tttccgctac cttctcttcc aaaatatcgc ggatgacgcc
     2881 ggcaggcagg actttttcct cttttttcag ggcgacgcgc aaggtaaagt cagcagggaa
     2941 aacgagttcc ggggagaatg aaaccggtgc ggtaaagcct tcgctgaacc agtctaagcc
     3001 ttggcaatgg gtaaattcag cttcagcaag tttgtcggca agtatgtccg cctcaggcag
     3061 cttttctttg ttgagcggat aaaaactaat ctgcttgaac cacataatgt ttcctattgt
     3121 ttgaaatgtc gagaattatt tgctgaattg ttttttcaca ctgactttgg ttttcttctt
     3181 gaagcggttt ttctcttctt tgcggccttc gcgtttctca atacggttgc tcaggctgac
     3241 gcggcgcagc ggttttttct tcggtttgtc ttccgcattt tcatacgggt tttccgaaac
     3301 attgtattga atccgcaacg gcgtgccttg caggttgaag gctttgcgga acgtttgggt
     3361 cagatagcgc gtatagctgt cggaaatcgc gtgcagcgaa ttgccgtgta ccacaattac
     3421 gggagggttc atgccgcctt ggtgggcata acgcattttc ggacgcacca agccggcacg
     3481 cggcggttgc tgacgctcga tcgcgctttg taatacgcgc gtgattttcg gtgttggcat
     3541 cttaatcatc gccgcgttgt aggcagcctg aatgctgtcg aacaatccgt ctatgccgcg
     3601 ttctttcaat gcggaaataa agtggaattt agcaaaatca aggaaataca gtttgcggtt
     3661 gatatcgcgt ttcacttgct cgcgacgttc ttcgctgatg ccgtcccatt tattgaccgc
     3721 caccaccaaa gcacggcctg cctccaaagc gaaacctgca atcgtcgcat cttggtcggc
     3781 gatgtcctgc tgcgcgtcca ataccaaaac agcgacgttt gccgcttcaa ccgcctgcat
     3841 ggctttgata acggagaatt tttccactgc ttcatccact ttgccgcgac ggcgcacacc
     3901 tgcggtatcg atgatggtaa acggtttgcc ttcgcgctcg aaatcgatat ggatactgtc
     3961 gcgcgtcgtg ccggccatat cgaaggcaat cacgcgctct tcgccgagaa tggcgtttac
     4021 cagcgtggat ttgccgacgt tcggacgacc gatgacggca aaaacgggat gttttgcatc
     4081 ggcttcttcg acttccggct cggggaagtt ttctaaaatt tcttcaatca ggtaatacac
     4141 gccgtcgccg tgcgcaccgg aaataacata agggtcgccc aaagcaagtt cgtagaactc
     4201 ggcggcaagc acggccctgt tgccgccttc gcctttgttt accgccagat aaacagggcg
     4261 cgggctttgg cgcaaacggt cggcaatgat tttgtcttgc ggggtcagac cggtgcggcc
     4321 gtccaccaaa aatacgacgg catcggcttc atcgacagcc tgcaaggttt gttttgccat
     4381 ttcgtgcaaa atgccgctgt ccacaaccgg ctcgaaacct ccggtatcga tgaccaaata
     4441 aggtttgctg ccgactttgc cgtgtccgta atggcggtcg cgcgtcagac cgggcaggtc
     4501 gtgtacgagc gcgtctttgg tgcgcgtcaa acggttgaat aaagtagatt tgccgacgtt
     4561 ggggcggccg acaagcgcga tggttggttt catgattggg tctttctgtg tcaagtgccg
     4621 ttcgggagaa ctgaacacaa gcaggtgtcc gttgggacac ggcagatggt tttacgggaa
     4681 ttgccgtagg atagtgttgt ctgaaatgcc gtctgaagag agggtggcat ttcagacggc
     4741 atttatttca gcgaatcgag tttcatttga accaattcac gaccgacaga atcttgaggc
     4801 attttttcta aagcctgacc gtagtttttt aaggcttcct ggctttttcc ctgtgcggca
     4861 tagacatcgc ctttggtttc catcagcagg ggggagaagt ccgcttcaac cggcgtgtcg
     4921 agcgcggcaa gcgcggcatc gtattttttt tgttgcaaca acacaacgcc cagacgctgc
     4981 gccgccaacg cttgaatcag gctgtctttt tggttggaca acacccattt caaatggcct
     5041 tcggcaacat cgtaacgctg cgcgtcaaat tcggttgccg ccgccatcag cgtggcttgg
     5101 gcggcggaaa tagaatgcgg gtagctttgt tggagtttgg tcaattcggc attaatttcg
     5161 ctttgcgggg ctttgttttg cgccttttcc acgatgtttg ccagcaccgc cgccgcttcc
     5221 tgattttggg aagccgcacg gttttggtaa accgtgtatc ccaagtagcc gagtgctgcc
     5281 aaaatcagca gggcaaacag ccatttgccc gtggttttcc aaaaatattt aaagttgtct
     5341 aactcttgtt gttcttcgag atgggctgcc atttatgcgt tcttccattg ttgtaaagta
     5401 tgggttaaat cctcggcggc gacagtttgc tgaccgtgtg cgccgttcat gtctttgagc
     5461 gtaaccgtac cgttcgccag ttcgtcttgc gcgacaatca gggcaaagcg cgcgccgctg
     5521 ttgtcggctt ttttcatttg cgctttcagg ctttgatagc cggaatgctg cattacattg
     5581 aaaccttgcg cgcgcaaggc ttgcgcgtat ttcatcacct gcaagtccgc cctttcgcct
     5641 tggtgcattg catagacatc aggcgcagcg ttcacttcca gcgagccgta ttcgctcacc
     5701 aaaagcagca gccgttcgat gcccatcgca aagccgatgg acggcgcagg tttgccgcca
     5761 agttcctcaa tcaaaccatc gtaacggccg ccgccgcaca cagttgcctg cgcgccgagt
     5821 ttgtcggtcg tccactcaaa aaccgtctga ttgtaataat ccaaaccgcg aaccaagcgc
     5881 ggattttcaa tatattgaat acccaaacca tccaacatcg ccttgaagcg tgcatagtgg
     5941 ttttgcgaag cctcgcccaa gtaatccacc aaacgcggcg cggcgttgca gatttcctgc
     6001 aaatcagggt ttttcgtatc taaaacgcgc aaaggattgg ttttcagacg gcgtttgctg
     6061 tcttcatcca atttatcttc ataacgggtc agatattcaa ccaatgccgc acggtgtgcc
     6121 gcgcgttcct cacggttgcc caagctgttg atttccaaag tcaggtattc gcgaataccc
     6181 aatttttccc acaagtcggc agacatcgcg atgatttccg catcaatatc cggaccttca
     6241 aaacccaaag cttcgatacc gacctgatgg aactgacgat aacggccttt ttgcggacgc
     6301 tcgcggcgga acatcggccc catataccac agcttttgcg ggctgttgta gagaaggttg
     6361 tgttcgacca ccgcacgcag acaagaagcc gtaccttcag gacgcaggct caaactcaaa
     6421 gaatcgtttg aatcggaaaa ggtgtacatt tccttgccga ccacatcggt ttcttcgccg
     6481 atggagcgga caaacaaacc ggtttgctcg acaatcggcg tacggatttg ctggtagccg
     6541 taagcgcgcg tccaacggtt taccgtatct tcaaacgcct gccaaaacgc agccgtcagt
     6601 ttgaaatctt tttgttcgac aggtaaaagg tcgttcatac cttttacaga ttgaattttt
     6661 tgtgccattt caatatggga taagcgaaaa tcaaatagtt gggcattata gctgattttt
     6721 aagggtttgt gaggttggga gtaaatcaaa aggccgtctg aaacagtttt cagacggcat
     6781 ttgacttact ctgcacgtgc ttgcctgatt tgttcgactg caaactccgt ctgccgcttg
     6841 ggatgatgtg tgaaaaacaa tttatttgaa attgtctcgg cttttttcgg cacgaccgcc
     6901 aaaatcttac ctgccaaatt tccctcacgg gtttgccaag cctccaaaaa ctgcgccctg
     6961 ctcattgaaa catgccccag cgacgggtcg gcaagcaaaa ccgtattgcc gtctatcccg
     7021 cgcaataccg agaaatgatc atccttgcgg tatttcagat acacgatgac ggggattttc
     7081 aactgcgcga gctgctcgaa agacagggca tagcctttcg cttcaaaacc caaatcaggc
     7141 ataatgcgcc gcatatcctc aaacgacgcg cgcatctgct ccttatccag ctttttcaac
     7201 acttcttctt ccgtcagcgt ttgcccgtaa aaattgttca aaagcgtcgc caccgaagcc
     7261 gccccgcagg aaaaatccaa atcctgcttt acaatattga aatcccgcct ttctttccaa
     7321 ctctgcactt tgatttttcc gtaaacaaca ggattatcgt taaacatcgg tgcagcattc
     7381 aaacgataag ataaagaaac gacaacacac gccaacagaa aaacatattt gaacttcatc
     7441 atattgtcca cataaagggc agcctgaaaa tctttcaggc tgcccttgtc aaattattcc
     7501 tagctttcgg cttttttggc aaaccaaaca atccgattac ccgcataata ctttccattt
     7561 attgaaatcc gacaagccgc gcccaaaaaa tgccatgcac tgtcgatttc cgcagcaatc
     7621 tttgtaccgt tttcttcaaa ttccaaatat tcacccaata ataaacttga aacagaacgc
     7681 gtgggcagca agtgcccacc ctacgcttat tcaaataatt tgattaaata aagaataaag
     7741 aaaatgcatc aggaacaaaa ttataatctg ccacctgact cacaccgctt ttaaagtaag
     7801 gggcatcaaa atcaaaaccg caaaaaaaat aatttttgca ttgattttta atagatttaa
     7861 aattcgaata tagtgtttct ccagatttaa aaagtttatc tttatctata tatttgatgc
     7921 tttccctatc caaaataaat atttcaaaca ttaaaaaatc attacatgac caagccaaat
     7981 cataaatttg attcaaatgg gtatcataaa gataaaaata ataaggtttg ggaacaggta
     8041 aaatatttaa tggaaaagga ggactaattt tcttaatatc tgatgactga tatccatatc
     8101 tttctatatt cttaaaaatt tcatctttct taagataaca agacattctg acaatcacaa
     8161 cctgttcatc ggatatatta tctatttgca tggcgcgtat aacacgccat gcctgattaa
     8221 aattagtctc ccttacctta gaatctatta tctttttcaa agatgaaaat gccccttatc
     8281 ttgaactctc cagttagaac ctggaagttt cgtacctctt aaatgtgtat taatatttct
     8341 tatagtttca ttaaaatgcc acgcgctgcc gatttcaacg gtaattttcg taccgctttc
     8401 ttcaaattcc aggtattccc ccattagcta acgcaaagaa gcagacgcca tttcggcttc
     8461 gttatgataa acccgccttc cgttgatata gacttccgcc cctgtccgct ccaaattcca
     8521 aaaattccgt actgaaattt ccatatcccg atattgtgca gaccatgttt tttcgaaggt
     8581 tttcataaaa tttcctatac ctgtccaatc ggcacatatc aattgcatt
//
LOCUS       DAXHPV010000082         8587 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.082, whole genome shotgun sequence.
ACCESSION   DAXHPV010000082 DAXHPV010000000
VERSION     DAXHPV010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8587)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8587)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8587
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.082"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(185..661)
                     /locus_tag="ACFM6C_001296"
     CDS             complement(185..661)
                     /locus_tag="ACFM6C_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease"
                     /protein_id="HFC6158750.1"
                     /translation="MLAACQSGRAPKNAHTASADTPAGESCKVIRGDTAGSGKNIIYR
                     CSNGQAAINAAIADGVLESEIPVSFGGGGVPVANGRNLVTRQAANGVGKSDSEACERA
                     LINAARKFQQTAGKLGGRSITGFHSYFDKQPLQGGQYDCQTGSFHVRVVMRTNVVR"
     gene            complement(794..2149)
                     /gene="yegQ"
                     /locus_tag="ACFM6C_001297"
     CDS             complement(794..2149)
                     /gene="yegQ"
                     /locus_tag="ACFM6C_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HFC6158751.1"
                     /translation="MKAPELLLPAGGLERMRAAYDYGADAVYAGSPRYSLRARNNEFA
                     KLDVLEQGIKEAHERNKKFFLTVNTLPHNSKLKTFVADMEPLIAMKPDALIMADPGLI
                     MTVREKWPEMPIHLSVQANTTNYWGVKFWQNIGVERIILSRELSMEEIAEIRQECPDI
                     ELEVFIHGALCIAYSGRCLLSGYFNHRDPNQGTCTNSCRWDYKVHNATESDAGDAQLL
                     QGFNFEKAQEEANQNFEGINGQKRHPYADKVFLIEESNRPGEMMPIMEDEHGTYIMNS
                     KDLRGIEVVEKLAKIGVDSLKVEGRTKSLYYVARVAQSYRKAIDDAVAGRPFDYSLLS
                     ELEGLANRGYTSGFLERHQTQDYQNYLSGHSTAKQSQYVGHVTEIDENGWATIEVKNR
                     FAVGDSLEIIHPGGNQTIKLEQMTRKGQPVDVAPGNGIQVKIPNMQGKEKALIARVLN
                     P"
     gene            2474..3262
                     /locus_tag="ACFM6C_001298"
     CDS             2474..3262
                     /locus_tag="ACFM6C_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HFC6158752.1"
                     /translation="MNPKIVFFDIDDTLYRKYTDTLRPSVKTAVAALRGKGILTALAT
                     GRSLATIPEKVRDMMAETGMDAVVTINGQFALLHGKTVREVPMDAGLMGRVCAHLDGL
                     GMDYAFVGGEGIAVSALSECVCRALKHIASDFFADKDYFSSKPVYQMLVFAEENEMPP
                     WSDIVEREGLKTVRWHEEAVDLLPAGASKTDGIRSVVEALGLEMADVMAFGDGLNDVE
                     MLSEVGFGVAMGNGEQAAKEAAKYVCPGVDEDGVLRGLQDLGVI"
     gene            complement(3308..3907)
                     /locus_tag="ACFM6C_001299"
     CDS             complement(3308..3907)
                     /locus_tag="ACFM6C_001299"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003999 - adenine
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0006168 - adenine salvage [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HFC6158753.1"
                     /translation="MALKTSNLEHAMLVHPEAMSVGALADKIRKIENWPQKGILFHDI
                     TPVLQSAEYFRLLVDLLVYRYMDQKIDIVAGLDARGFIIGAALAYQLNVGFVPIRKKG
                     KLPFETVSQSYALEYGEAAVEIHTDAVKLGSRVLLVDDLVATGGTMLAGLELIRKLGG
                     EIVEAAAILEFTDLQGGKNIRASGAPLFTLLQNEGCMKG"
     gene            4035..4652
                     /gene="gmk"
                     /locus_tag="ACFM6C_001300"
     CDS             4035..4652
                     /gene="gmk"
                     /locus_tag="ACFM6C_001300"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004385 - guanylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006163 - purine nucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HFC6158754.1"
                     /translation="MSAYRKGNIFIISAASGTGKTTLVSRLLANHNGLRVSVSHTTRP
                     PREGEVNGVHYHFVSKEEFESLIAQEAFLEYADVFGNYYGTSAEGVNALAAAGYDVIL
                     EIDVQGAAQVRNALPEAVGIFILPPSFDVLAARLNGRGTDSREVIQRRLSKARHEIEQ
                     SVLFDFVVVNDDLARAEEDLRHIVNACRLKRSRQLGFIADLLENS"
     gene            4711..4917
                     /gene="rpoZ"
                     /locus_tag="ACFM6C_001301"
     CDS             4711..4917
                     /gene="rpoZ"
                     /locus_tag="ACFM6C_001301"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HFC6158755.1"
                     /translation="MARITTEDCTGKISNHFDLTLVAARRARQLENGNTPLVDDVRNN
                     KPTVTALREIAAGHIGTELLTRNK"
     gene            5010..7166
                     /locus_tag="ACFM6C_001302"
     CDS             5010..7166
                     /locus_tag="ACFM6C_001302"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015970 - guanosine tetraphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HFC6158756.1"
                     /translation="MPVPQPTAPYDHLTAEARTLLFRTASYLKPEEQVELEKAVAYAF
                     HAHDGQTRKSGEPYITHPIAVATQLALWHMDIQGLCAGVMHDVLEDTGVTKGEMAAVF
                     GNTIAEMVDGLSKLEKLKFEDHAEHQAESFRKLILAMTKDVRVIVVKLADRLHNMRTL
                     GSMRPDKRRRIARETLEIYAQIANRIGLNNAYQELQDLSFQNLHPNRYETLKKAMDKS
                     RKNRQDVVGKVLRAFGQRLVGVNIEAKIKGREKNLYGIHQKMMAKKLRFAEVMDIYGF
                     RVIVNSIPACYAALGALHTLYQPKPGRFKDYIAIPKSNGYQSLHTTLVGPYGLPIEVQ
                     IRTKEMDAVAEGGIAGHWSYKSYSKTVDQAVLHTNRWLKNILDLQASSANAIEFLEHV
                     KVDLFPNEIYILTPKGKILTLPKGATPVDFAYAVHTDIGHKTVAARINNIMMPLRTKL
                     KTGDSVEIITSEHAKPNPAWLNFAVSGRARSAIRQYIKNLNRHDAVVLGESLLQKALS
                     SLLPKDVLLSDGIKEKYLADLNDKQTSFEEVLYNVGMGHTLPVYVAMHIAELAGEHFG
                     SEVRLSSIKVDGQESGHIHFAECCHPVPGDSIRLLLVKGKGMIIHRDSCPTLLKSDPE
                     QQLDADWENMNGQNYRVGLQVQSEDSHGLLALMAQAISDSGADIESVETPSKSQSGTE
                     GFVEFKFLLKVKNLNQLNQIIQNLHSIPYIRKVIRS"
     gene            complement(7233..8417)
                     /gene="coaBC"
                     /locus_tag="ACFM6C_001303"
     CDS             complement(7233..8417)
                     /gene="coaBC"
                     /locus_tag="ACFM6C_001303"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015941 - pantothenate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HFC6158757.1"
                     /translation="MGKHILLGVTGSIAAYKSCELVRLLKKQGHSVTVVMSRSATEFV
                     SPLTFQALSGNPVLTDTHGGNGSNGMEHINLTRNADVFLIAPASMNTVAKICNGVADN
                     LLTSLAAARKCPLAIAPAMNVEMWLNPANQRNIAQLVSDGITVYMPGSGEQACGENGM
                     GRMPEPAELLDLLPDLWTPKILRGKKILITAGATFEAIDPVRGITNTSSGKMGVALAR
                     ACRAAGAEVSLIHGQLQTELPFGISDTVQAVSAEDMHRAVHRLIEKQDAFISVAAVSD
                     YKVKNRSTQKFKKDKNAKRLSIELDENPDILASIASLPNPPFCIGFAAETENVMAYAR
                     EKRIKKKIPVIVANDVSIAMGKPTNRITIIGDDGELSFPETSKDEAAMQIVERLAVYL
                     NK"
BASE COUNT         2026 a         2017 c         2352 g         2192 t
ORIGIN      
        1 cttcgtcgcc ttgtcctgat ttttgttaat ccactataat atagtgttga tagacgtatt
       61 taacttaaat gtattcaata ggataggtct cttcctaacc gaaaaaataa ttgtcttttc
      121 ctttgcaaat aattgaaatc aacagattac taaaacacag cctaattttt tgattgccga
      181 tatgttaacg gacgacattg gtgcgcatga ccacgcggac gtggaacgaa cctgtctgac
      241 agtcgtattg tccgccttgc agcggctgct tgtcgaagta gctgtggaag ccggtaatac
      301 tgcgtccgcc gagtttgcct gcggtctgtt ggaatttgcg ggcggcattg attagggcgc
      361 gttcgcaggc ctctgagtcg gatttgccaa cgccgtttgc tgcttgccgt gtaaccagat
      421 tcctgccgtt tgcaaccggt acgccgccgc cgccgaagct gacgggaatc tcggattcca
      481 atacgccgtc tgcaatggct gcatttattg ccgcctgacc gttgctgcaa cggtaaatga
      541 tgtttttgcc gcttcctgcg gtgtcgcccc ggatgacttt gcatgattct ccggccggtg
      601 tgtcggcgga tgccgtgtgc gcgtttttag gtgcgcggcc ggattggcag gctgccagca
      661 tcagggcggc ggcggagagt atgaggattt ttttcatgtc ggatgtcctt gtttgctgtg
      721 ggaaatcatt gccattgtac cgtaagattc aacaaaatgc cgtctgaaaa cgggtttcag
      781 acggcatcgt ggcttagggg ttcaatacgc gtgcgatgag ggctttttct ttaccttgca
      841 tattggggat tttgacctga atgccgttgc cgggtgcgac atcgacaggc tggcctttgc
      901 gggtcatttg ttccaatttg atggtttggt tgccgcccgg gtggatgatt tcgagcgaat
      961 cgccgacggc gaagcggttt ttaacttcga tggtcgccca gccgttttcg tcgatttcgg
     1021 taacgtggcc gacatattgg ctttgtttgg cggtggaatg gccgctgagg tagttttgat
     1081 agtcttgggt ttggtggcgt tcgaggaagc cgctggtgta gccgcggttg gcaaggcctt
     1141 cgagttcgct caataggctg taatcaaacg gacggcccgc gacggcatcg tcaatcgctt
     1201 tgcggtagga ctgggcgacg cgtgcaacat aatagagcga cttggtgcgg ccttcgactt
     1261 tgaggctgtc cacgccgatt ttggcgagtt tctcaaccac ttcaatgccg cgcaggtctt
     1321 tggagttcat gatgtaagtg ccgtgttcgt cttccataat cggcatcatc tcgcccgggc
     1381 ggttggactc ttcaatcagg aaaactttgt cggcgtaggg gtggcgtttt tgaccgttga
     1441 tgccttcaaa gttttggttg gcttcttctt gggctttttc aaagttaaaa ccttgcagaa
     1501 gttgggcatc gcccgcatcg ctttcagtgg cgttgtggac tttgtaatcc cagcggcagg
     1561 agttggtgca ggtgccttgg ttggggtcgc ggtggttgaa atagcccgac aataggcaac
     1621 ggccggagta ggcgatgcac aatgcgccgt ggatgaagac ttcgagttcg atgtcggggc
     1681 attcttggcg gatttcggcg atttcttcca tgctcagttc gcgcgacagg atgatgcgtt
     1741 cgacgccgat gttctgccag aattttacac cccagtagtt ggtggtgttt gcctgtacgg
     1801 acaggtgaat cggcatttcc ggccattttt cgcgcacggt cataatcaaa cccggatccg
     1861 ccataatcag cgcgtcgggt ttcatcgcaa tcagcggctc catatcggcg acgaaggttt
     1921 tgagtttgga attgtgcggc agggtgttga cggttaaaaa gaattttttg ttgcgctcgt
     1981 gcgcttcttt aatgccttgc tcgagaacgt cgagtttggc aaattcgttg ttgcgggcac
     2041 gcagtgagta acgcgggctg ccggcgtaaa cggcatctgc gccgtagtca taggcggcgc
     2101 gcattctttc caatccgccg gcgggcaata agagttcggg tgctttcatc gtgtttcctt
     2161 ttcggttgaa accccgccct ttagggcggt agaatcagac tttatttggg agggacgtaa
     2221 ccctttccga atcagggcaa catatagggc gacgctttat gtgtcgtcct gtgtgttgaa
     2281 acatgatttg tatgctttgt aaaaatgttt cagacggcat tgctgcaaat gccgtctgaa
     2341 aagggtttga ggatgggcgg attatccgcc ttttcgtgtt cgcggtcaat tttgccggga
     2401 aatttataag gatttatcaa gtatttgcct gattgggata caatgcggca gtttgaatgc
     2461 gagagagaat gtgatgaatc ctaaaatcgt gtttttcgat attgacgata cgctgtaccg
     2521 caaatatacg gataccttgc gtccttccgt gaaaacggcg gtggcggctt tgcgcggcaa
     2581 aggcatattg acggcgttgg caacggggcg gtctttggcg acgattcccg aaaaggtcag
     2641 ggacatgatg gcggaaacgg gtatggatgc cgtggtaacg ataaacggac agtttgcgct
     2701 gctgcacggt aaaactgtgc gcgaagtacc gatggatgcc ggtttgatgg gcagggtttg
     2761 cgcgcatttg gatggcctgg gtatggatta tgcgtttgtc ggcggagagg ggattgccgt
     2821 gtccgcgctg tcggaatgcg tgtgccgcgc cttgaagcat atcgccagcg atttttttgc
     2881 cgataaggat tatttttcaa gcaaaccagt gtatcagatg ctggtgtttg cggaggaaaa
     2941 cgaaatgccg ccctggtcgg atattgtgga acgggaaggc ttgaaaacgg tgcgctggca
     3001 cgaggaagcg gtcgatctgc tgcctgcggg tgcgtcgaaa acggacggca tcagaagcgt
     3061 ggttgaagca ttgggtttgg aaatggcgga cgtgatggcg ttcggcgacg gtttgaacga
     3121 tgtggaaatg ctgtctgaag tcgggttcgg cgtggcaatg ggcaacgggg aacaggcggc
     3181 gaaagaagcg gcgaaatatg tttgccccgg cgttgatgag gatggtgtgt tgaggggttt
     3241 gcaagatttg ggcgtgattt gaacgcatca taacaaccct gccggtttca gacggcaggg
     3301 tcggttttca gcccttcata cagccttcgt tttgaagcag ggtaaataag ggcgcgccgc
     3361 ttgcacggat attcttgccg ccttgaaggt cggtaaattc caaaatggcg gcggcttcga
     3421 caatttcccc gccgagtttg cgaatcagct ctagtccggc aagcatcgtg ccgcccgtgg
     3481 caaccaaatc atcgaccagc agcacgcgcg aaccgagttt gacggcatcg gtgtggattt
     3541 ccaccgcagc ttccccgtat tcgagcgcgt agctttgcga tacggtttca aaaggcagct
     3601 tgcctttttt gcggatgggg acgaaaccga cgttgagctg gtaggcgagt gccgcgccga
     3661 taatgaagcc gcgcgcgtcc aaaccggcaa cgatgtcgat tttctgatcc atatagcggt
     3721 aaaccaataa atcaaccaaa aggcggaagt attccgcgct ttgcaggacg ggcgtgatgt
     3781 cgtggaataa gatgcctttt tgcggccagt tttcgatttt gcggattttg tcggcaagcg
     3841 caccgacact catagcttcg ggatgaacca gcattgcgtg ttccaagttt gatgttttta
     3901 acgccatatt gtagccgtca gcctgccgct tgccaaatca atcaaaacaa tagcggcaaa
     3961 atatgggcat cggcaaatag gaaaccgagt gtccgttgtg atacaatcgg ctggaaaata
     4021 tacaggtaaa aaatatgtcc gcttatcgaa aaggcaacat ctttatcatt tcggccgctt
     4081 ccggcacggg caaaaccacg ctggtgtcgc ggctgttggc aaaccataac ggtttgcgcg
     4141 tttccgtatc gcacacgacg cgtccgccgc gtgaaggcga agtaaacggc gtacattatc
     4201 attttgtttc taaagaagag tttgagtcgc ttatcgcgca ggaagctttt ttggaatacg
     4261 cagacgtgtt cggcaactat tacggcacaa gcgcggaggg cgtgaatgct ttggcggcgg
     4321 caggctatga cgtaattttg gaaatcgacg ttcagggcgc ggcgcaggtt cgcaacgcgc
     4381 tgccggaagc cgtcggcatc tttatcctgc cgccgtcttt cgatgtgctt gctgcacgtc
     4441 tgaacggacg cgggacggac agtcgggaag ttatccaaag gaggctgtcg aaggcaaggc
     4501 atgaaatcga acagtccgta ttgttcgatt ttgtcgtggt caatgatgac ttggcgcggg
     4561 cggaggagga tttgcgccat attgtgaatg cctgccgtct gaaaaggtcg cggcaactgg
     4621 gatttattgc agatttgttg gaaaattcct aaaaaaccgc gaaaataccc agtttcctat
     4681 tttaaatatt tttgaaagaa agcaaataat atggcacgta ttaccaccga agactgtacc
     4741 ggaaaaattt ccaaccattt tgacctgaca ttggtagcgg cccgtcgggc ccgccagctt
     4801 gaaaatggca atacgccgct tgtggacgat gtccgcaata acaaaccgac cgttaccgcc
     4861 ttaagggaaa tcgccgccgg gcatatcggt acggaactgt tgacgcgcaa taaataaatt
     4921 ctgccggaaa cgcacgtcgg cacattctgc cgccgtgcag tccgacggtt tgaaacgaaa
     4981 aataaaatat gttccgaaag ccgtctgaaa tgcctgtccc tcaacccacc gcaccttacg
     5041 accatttaac tgccgaagca cgcaccttgc ttttccgtac cgcttcctat ctcaagcctg
     5101 aagaacaggt tgagctcgag aaggccgttg cctatgcatt tcacgctcat gacggacaaa
     5161 cccggaaaag tggcgaacca tacattacgc atccaattgc cgttgcgacg cagctcgccc
     5221 tttggcatat ggacatacag ggtctgtgtg caggcgtgat gcacgacgta ttggaagata
     5281 cgggcgtgac aaaaggggaa atggcggcgg tgttcggcaa tacgattgcc gagatggtgg
     5341 acggtctgtc caaactcgaa aaactcaaat ttgaagatca tgcggaacat caggcggaga
     5401 gtttccgcaa actgattttg gcaatgacca aagatgtgcg cgtgattgtc gttaaacttg
     5461 ccgaccgtct gcataatatg cggacactcg gttcgatgcg cccggacaaa cgccgccgga
     5521 ttgcaaggga aacccttgaa atctatgcac agattgccaa ccgtataggt ttgaataacg
     5581 catatcaaga gcttcaggat ttatcgttcc aaaacctgca tcccaaccgc tacgagactt
     5641 taaaaaaagc gatggacaag agccggaaga accggcagga cgttgtcggc aaagtgttgc
     5701 gcgcattcgg ccagcggctg gtgggtgtga atatagaggc caaaatcaaa ggcagggaaa
     5761 aaaacctgta cggcatccat cagaaaatga tggcgaaaaa gctgcgcttt gccgaggtta
     5821 tggatattta cggtttccgc gtcattgtca acagcattcc agcctgttat gccgcactcg
     5881 gcgcattgca caccctctat cagcccaagc ccgggcggtt caaagactat atcgccattc
     5941 cgaaaagcaa cgggtatcaa agtctgcata cgactttggt cggtccttac ggcttgccga
     6001 ttgaagttca gatacgtacc aaggaaatgg atgctgttgc cgaaggtgga atcgccggac
     6061 attggagcta taaatcatat tctaagacgg tcgatcaggc ggtgcttcac acaaaccggt
     6121 ggctgaaaaa tatcttagat ttgcaggcaa gcagtgccaa tgccattgag tttctcgaac
     6181 acgtcaaagt cgatttgttt ccgaacgaaa tctacatcct tacgccaaaa ggaaaaatcc
     6241 taactttgcc caaaggggca acgcctgtcg attttgctta tgcggtgcat accgatatcg
     6301 ggcacaaaac cgttgccgca cgtatcaaca atatcatgat gccgttgcgt acgaagctca
     6361 aaaccggtga ttctgttgaa attatcacat ccgaacacgc caaacccaat cccgcgtggt
     6421 tgaatttcgc cgtgtcaggc agggcgcgca gtgccatacg ccaatatatt aaaaacctta
     6481 accggcacga tgcggtcgtt ttgggagaga gtctcttaca aaaagccctg tccagtttgc
     6541 tgcccaaaga tgtcctgctt tcagacggca tcaaggaaaa atatcttgcc gatctcaacg
     6601 acaaacagac ttcatttgag gaagtgctgt acaacgtcgg tatggggcat accctgcctg
     6661 tttatgtcgc catgcacatt gctgagttgg caggggagca tttcggcagc gaggtcaggc
     6721 tcagttccat taaagtcgat ggtcaggaaa gcgggcatat tcattttgca gagtgctgcc
     6781 accctgttcc cggcgattcc atccgtttgc tgttggttaa gggaaaaggc atgattatcc
     6841 atagggatag ctgcccgacg ttgttgaagt ccgatcccga acagcagctg gatgcagact
     6901 gggaaaatat gaatgggcag aactaccgtg tcgggcttca agtccaatcg gaagacagcc
     6961 acggcctgtt ggcattaatg gcgcaagcga tttccgattc cggtgcggac atcgagtcgg
     7021 tcgaaacacc atccaaatcc cagtcgggaa cggaaggttt tgtcgaattc aaattcttat
     7081 tgaaagtcaa gaatctgaat cagttgaatc agattattca aaatctgcat agtattccat
     7141 atatccgcaa agtcatcaga agttgaagca ggtaaaacgg gttgcctttt gattaacagg
     7201 caacccgttt tatggtttat ccgttcaatt gcttatttgt tcaaatatac ggcaagcctt
     7261 tcaacaatct gcatcgccgc ttcatcttta cttgtttcgg gaaaagatag ttccccgtcg
     7321 tccccgataa tggtaatccg gttggtcggt ttgcccatcg cgattgaaac atcattggca
     7381 actattaccg gtattttttt cttaatacgt ttttctcgtg catatgccat tacattctcc
     7441 gtttcagcgg caaaaccgat gcagaacggc gggttcggca atgaggcaat agaagccaaa
     7501 atatcagggt tctcatccaa ttcgatggat agccgtttgg catttttatc ttttttgaat
     7561 ttttgcgtac tcctgttttt aaccttatag tctgagacgg cggcaacaga aataaaagca
     7621 tcttgttttt caatcaaacg atgcactgcg cgatgcatat cttcagcgct gacggcttga
     7681 accgtatcgg atatgccgaa aggcagttcg gtttgaagct gtccgtgaat caggctgact
     7741 tccgcaccgg cggcacggca cgcccgcgcc aaagctaccc ccatttttcc gctggaggta
     7801 tttgtgatgc ccctgacagg gtcaatggct tcaaatgtcg cacctgcggt aatcaagatt
     7861 ttcttgcccc ttaaaatttt cggtgtccac aagtccggaa gcaaatccag caattcggca
     7921 ggttccggca tccttcccat accattttct ccgcaagcct gttcgcccga gcccggcata
     7981 tagacagtaa tgccgtctga aaccagttgt gcgatattcc gttggttggc agggttgagc
     8041 cacatttcca cattcatcgc gggagcgatg gcgagcggac atttccgtgc ggctgccaga
     8101 ctggtcagta ggttatctgc cacgccgtta cagatttttg ccacggtatt catacttgcc
     8161 ggcgcaatca gaaaaacatc cgcattccgg gtcaggttga tatgttccat accgtttgaa
     8221 ccgttgccgc cgtgcgtgtc ggtcaggaca ggattgccgc ttaaagcctg aaaagtcagc
     8281 ggagaaacaa attcagttgc cgagcggctc ataaccaccg taaccgaatg cccctgtttt
     8341 ttcagcagac gaaccaactc gcaagactta tacgccgcaa tactgcccgt tacacctaaa
     8401 agaatatgtt tacccatttt gacaatttct aattacgaag aaaaaacagc agccattcta
     8461 taacaaagtg cggatacatt agttaccgtt tggatacaaa atgccgtctg agtccccgag
     8521 tttcagacag catattcaca aaggcgcacc ggtcagagga gggggaggaa gggattgttg
     8581 gaggtgg
//
LOCUS       DAXHPV010000083         8569 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.083, whole genome shotgun sequence.
ACCESSION   DAXHPV010000083 DAXHPV010000000
VERSION     DAXHPV010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8569)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8569)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8569
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.083"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(152..3004)
                     /gene="gcvP"
                     /locus_tag="ACFM6C_001304"
     CDS             complement(152..3004)
                     /gene="gcvP"
                     /locus_tag="ACFM6C_001304"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase"
                     /protein_id="HFC6158758.1"
                     /translation="MKLSELFNPNEFAARHLSFGDEAALLAAVGEKSMDDFVGNTVPQ
                     SIRMPSELDLPDALTEADALAKLKGIASKNVINKSYIGLGYYPTRVPNVILRNVLENP
                     GWYTAYTPYQAEIAQGRLEALLNFQQVCIDLTGFPVAGASLLDEATAAAEAMAMAHRV
                     GKVKSERFFVDERVYPQTLDVMKTRAKYFGFELVVGDFAKADEGEYFGALFQYVGKDG
                     DVQDLQDVIGRLKAKGTIVAVSADIMSLVLLKSPAELGADIALGNTQRFGVPMGFGGP
                     HAAYFAFKDEFKRSAPGRIIGVSKDASGKPALRMALSTREQHIRREKATSNICTAQAL
                     LANLAGMYAVYHGPEGVKRIANRIHALASAFADALVSDGLNVVHKVFFDTVTVDFGNK
                     EKADQVFAAALESGYNLRRVNDTQVAAAFHETSACEDLVDLYRAFTGKDAFAFADDVK
                     GRLNAELLRQDDILQHPVFNRYHTEHEMLRYLKKLEDRDLAMNRSMISLGSCTMKLNA
                     TAEMLPITWAEFSDIHPYAPEAQTVGYRELLADMENSLKAITGFDAISFQPNSGAQGE
                     YSGMLAIRRYQEAQGEAQRNICLIPKSAHGTNPATAAMLGLKVVVVDTDEHGNVNIDD
                     LKAKAEQHRDALSAIMITYPSTHGVYEEGIRDICRIIHENGGQVYMDGANLNAQIGIM
                     QPAEVGADVLHMNLHKTFCIPHGGGGPGMGPIGLKAHLAPFAPGHALTDTHSASADQT
                     AVAAAAFGSASILPITWMYLTMMGKQGMEQATRWALLNANYVAKRLGEDYPILYTGKN
                     GRVAHECIVDLRPLKAESGITETDIAKRLMDYGFHAPTVSFPVAGTLMIEPTESESKA
                     ELDRFIAALKSIRREVQKVIDGEWPKDDNPLVNAPHTAADITGEWAHPYSREEAVFPQ
                     PFVREHKFWPFVNRVDDVYGDRNLVCSCPPMENYED"
     gene            complement(3035..3394)
                     /locus_tag="ACFM6C_001305"
     CDS             complement(3035..3394)
                     /locus_tag="ACFM6C_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158759.1"
                     /translation="MTDRPSLLWIKPGQAEIMEYCEPEEASDPYATYRRANLMAGLPL
                     FVVILVLLNIVFPLPAYPLAWLVPAGFMVLGGGFPLSLPLVALLVLTCCILAHCPPLS
                     RLLCYPCPNHPMSKNSA"
     gene            3393..3572
                     /locus_tag="ACFM6C_001306"
     CDS             3393..3572
                     /locus_tag="ACFM6C_001306"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (Si)-synthase"
                     /protein_id="HFC6158760.1"
                     /translation="MPSEPAGRLFQKTPYRCNFMRLYGVGFALQTAYASRSSLVSQSV
                     HDYINNLGADKPLFI"
     gene            complement(3565..4206)
                     /locus_tag="ACFM6C_001307"
     CDS             complement(3565..4206)
                     /locus_tag="ACFM6C_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arylesterase"
                     /protein_id="HFC6158761.1"
                     /translation="MPSEKPMNRRTFLLGAGALLLTACGRKSARTHAKIPEGSTVLAL
                     GDSLTFGYGANPGESYPAQLQKLTGWNIVNGGVSGDTSAQALSRLPALLARKPKLVIV
                     GIGGNDFLRKVPKEQTRANIAKIIETVQKENIPAVLVGVPHITLGALFGHLSDHPLYE
                     DLSEEYGIPLFGGAWAEILGDNNLKSDQIHANGKGYRKFAEDLNQFLRKQGFR"
     gene            complement(4196..4747)
                     /locus_tag="ACFM6C_001308"
     CDS             complement(4196..4747)
                     /locus_tag="ACFM6C_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HFC6158762.1"
                     /translation="MNYCEFAASLPENTDNPNKHYHDTQYGFPIDSDNGLFERLVLEI
                     NQAGLNWTLMLKKQQAFQTAFEGFDIDTVAAFDDTDRERLLADAGIVRNRLKIDAAIF
                     NARQIQALQQEYGSFKNWLDTHHPRSKDEWVKLFKKHFKFVGGEIVGEFLMSTGYLKG
                     AHAESCPVYRETLKYHPKWLDAI"
     gene            complement(4751..5269)
                     /locus_tag="ACFM6C_001309"
     CDS             complement(4751..5269)
                     /locus_tag="ACFM6C_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HFC6158763.1"
                     /translation="MRLFPIAAALTLAACGTVQSTQYFVLPDSRYIRPATQGGETAVE
                     VRLAEPLKRGGLVYQTDPYRLNTAQNHVWADTLDDMLEAALSNAFNRLDNTRIFVPAS
                     RSGSTEKWTVYIDAFQGSYTGKTLISGYAVLPDGTNRPFHIETEQQGDGYAAMTAALE
                     QGLKQAAQQMVE"
     gene            complement(5269..6930)
                     /gene="pqiB"
                     /locus_tag="ACFM6C_001310"
     CDS             complement(5269..6930)
                     /gene="pqiB"
                     /locus_tag="ACFM6C_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intermembrane transport protein PqiB"
                     /protein_id="HFC6158764.1"
                     /translation="MTDNSPPPNGHAQARVRKNNTLLSAVWLVPLIALIAGGWLWIKE
                     IRNRGPVVTLLMDSAEGIEVNNTVIKVLSIDVGRVTRIKLRDDQKGVEVTAQLNADVS
                     GLIRSDTQFWVVKPRIDQSGVTGLGTLLSGSYIAFTPGKSDEAKDVFQVQDIPPVTAI
                     GQSGLRLNLIGKNDRILNVNSPVLYENFMVGQIESAHFDPSDQSVHYTIFIQSPNDKL
                     IHSASRFWLESGINIETTGSGIKLNSAPLPALLSGAISFDSPKTKNSKNVKSEDSFTL
                     YDSRSEVANLPDDRSLYYTAFFKQSVRGLTVGSPVEYKGLNVGVVSDVPYFDRNDSLH
                     LFENGWIPVRIRIEPSRLEINADEQSKEHWKQQFQTALNKGLTATISSNNLLTGSKMI
                     ELNDQPSSSPKLRPHTVYAGDTVIATQGGGLDDLQAKVVDLLDKFDKLPLDKTVAELN
                     GSLAELKSALKSANAALSSIDKLAGNPQTQNIPNELNQTLKELRTTLQGVSPQSPIYG
                     DVQNTLQSLDKTLKDVQPVINTLKEKPNALIFNSSSKDPIPKGSR"
     gene            complement(6923..8383)
                     /locus_tag="ACFM6C_001311"
     CDS             complement(6923..8383)
                     /locus_tag="ACFM6C_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PqiA/YebS family transporter subunit"
                     /protein_id="HFC6158765.1"
                     /translation="MGSAVGGQPLEKIFLPDTKGLFILPNLPVLHPDWVYRLFSFIMP
                     PLIFATFPMKPFAENIPHSLRGNCRDEALPPHTVDCPECGCRADVPRLDRGEAAFCPR
                     CGYKLFRVGRHPFSAPPAYAAASLILMAFAYGMTYIEVGIPGAASVLSLPEMMRLMVF
                     QDYGFLAEVMFVLTFGAPVLFLLLCLYVYAALIRKRVYPALRLATRVMVRLRQAMMVD
                     VFFVSTLVAYIKLSSVAEVRFGSAFYLMFALSVMLIRTSVSVPQHWVYFQIGRLTGDN
                     AVQTASEGKTCCSRCLYFRDSAESPCGVCGAELYRRRPKSLSISSAFLTAAVILYFPA
                     NILPIMISSNPAATEVNTILNGIAYMWDEGDRLIAAVIFSASILVPVLKIAAMSVLIA
                     SARFALPTGAKKLSHLYRITEAVGRWSMIDIFVIIILMCSFHTYAARVIPGSAAVYFC
                     LVVILTMLSAYYFDPRLLWDKRASDGIAFNETEKHD"
BASE COUNT         1913 a         2211 c         2441 g         2004 t
ORIGIN      
        1 tgtttgtccg tgtggaaatg acatcaaagg gtgtgaatag gcttttcatc tttgaaatct
       61 gtttgcacga tcggatgaat aaaaagtagg atgataaaaa agctgatgta tggatactgg
      121 tttaacccat ttgtcttcgg ggtttcaacg gtcagtcttc ataattttcc atcggtgggc
      181 agctgcacac gaggttgcgg tcgccgtaca cgtcgtccac gcggttgacg aagggccaaa
      241 acttgtgttc gcggacgaag ggctgcggga agacggcttc ttcgcgggaa tacggatgcg
      301 cccattcgcc ggttatatct gcggcggtgt gcggcgcgtt gaccagtggg ttgtcgtctt
      361 tcggccattc tccgtcgatg actttctgca cttcgcggcg aatggatttc agggcggcga
      421 taaagcggtc gagttcggct ttgctttcgc tctcggtcgg ctcgatcatc agcgtaccgg
      481 caacggggaa ggaaaccgtc ggggcgtgga agccgtagtc catcaggcgt ttggcgatgt
      541 cggtttcggt aatgccgctt tcggctttga gcggacgcaa atcgacgata cattcgtgcg
      601 cgacgcggcc gtttttgcct gtatacagga tcggatagtc ttcgcccagc cgtttggcaa
      661 cgtagttggc gttgagcaat gcccagcgtg tcgcctgttc catgccttgt ttgcccatca
      721 tggtcagata catccaagta atcggcagta tggacgcaga accgaaggcc gcagcagcaa
      781 cggcggtttg gtcggcactg gcgctgtggg tgtcggtcaa agcgtgtccc ggtgcgaacg
      841 gagccagatg ggctttcaag ccaatcggac ccatgcccgg accgccgccg ccgtgaggga
      901 tacagaaggt tttgtgcagg ttcatgtgca acacgtccgc gccgacttcg gcaggctgca
      961 tgatgccgat ttgggcgttg aggttggcgc cgtccatata aacctgtccg ccgttttcat
     1021 ggatgatgcg gcagatgtcg cggatgcctt cttcgtacac gccgtgggtg gacggatagg
     1081 taatcatgat ggcggacaaa gcgtcgcggt gttgctcggc tttggctttc aaatcgtcga
     1141 tgttgacgtt gccgtgttcg tcggtatcga cgacgacgac tttcaaaccg agcatggcgg
     1201 cggtggcggg gttggtgccg tgggcggatt tgggaatcag gcagatgttg cgctgcgctt
     1261 cgccttgcgc ttcctgatag cggcggatgg caagcatacc gctgtattcg ccctgcgcgc
     1321 cggagttggg ctggaaggaa attgcgtcaa agccggtgat ggctttcagg ctgttttcca
     1381 tatcggcaag caattcgcgg tagccgacgg tttgcgcttc gggagcgtaa gggtggatgt
     1441 cggagaactc cgcccaagta atcggcagca tttccgcagt cgcgttgagt ttcatggtgc
     1501 agctaccgag cgaaatcatg ctgcggttca tcgccaaatc gcggtcttcg agttttttca
     1561 ggtagcgcag catttcgtgt tcggtgtggt aacggttgaa cacaggatgt tgcagaatgt
     1621 catcttgacg cagcaattcg gcgttcagac ggcctttgac atcatcggca aatgcgaacg
     1681 catccttgcc ggtaaacgcg cggtacaaat caaccaaatc ttcgcatgcc gatgtttcgt
     1741 ggaatgcagc cgcaacttga gtatcgttaa cgcggcgcag gttatagccc gattccaaag
     1801 cagcggcaaa cacttggtct gctttctctt tgttgccgaa atcgacggta acggtatcga
     1861 agaagacctt atgaaccaca ttcaggccgt ctgaaaccag cgcatcggca aaggcagaag
     1921 ccagcgcgtg aatgcggttg gcgatgcgtt tcacaccttc agggccgtgg taaacggcgt
     1981 acatacccgc caagttcgcc agcaatgcct gcgcggtaca aatattggat gtcgcttttt
     2041 cgcggcggat gtgttgctcg cgggtggaca acgccatgcg caaggcaggt ttgcccgatg
     2101 cgtctttgga tacgccgatg atgcggcccg gggcggaacg tttgaactcg tctttaaacg
     2161 cgaaataagc agcatgcgga ccgccgaagc ccatcggtac gccgaagcgt tgggtgttgc
     2221 ccaaagcaat atccgcgccc aattcggcag gcgatttcag caaaaccaag ctcataatgt
     2281 cggcggaaac ggccacgatt gtgcctttgg ctttcagacg gccgataacg tcctgcaagt
     2341 cttgcacatc gccgtctttg ccgacgtatt ggaacagcgc gccgaagtat tcgccttcat
     2401 ccgctttggc aaaatcgccg accaccagct cgaagccgaa atacttggca cgggttttca
     2461 tcacgtccaa agtttgcgga tacacgcgct cgtccacaaa gaaacgctcg gattttacct
     2521 tgcccacgcg gtgcgccatc gccatcgctt cggcggcggc ggtcgcttcg tccagcaaag
     2581 acgcgcccgc cacagggaaa ccggtcaaat cgatacacac ttgttggaag ttcaacaaag
     2641 cttccaaacg accctgggca atttccgcct gatacggcgt gtaggcggta taccagcccg
     2701 gattttccaa tacgttgcgc aaaatcacat tcggcacgcg ggtcgggtaa tagcctaaac
     2761 cgatatagga cttgttgatc acgtttttcg acgcaatgcc tttcaatttt gccaacgcgt
     2821 ccgcttcggt cagggcatcg ggcaaatcga gttcggacgg catacggatg ctttgcggca
     2881 cggtgttgcc gacaaaatcg tccatacttt tctcgccgac agcggcaagc aacgccgctt
     2941 cgtcgccgaa actcaaatgc cgcgcggcaa attcgttggg gttgaacagt tcggacagtt
     3001 tcatttctac tccttcgggt ttgtagggct gccatcaggc agaattttta gacatcggat
     3061 gattcgggca agggtagcac aaaagacggg ataatggcgg acaatgcgcc agaatgcagc
     3121 aggtcaggac aagcagcgcc acaagcggca gcgataaggg aaagccgccg cccaaaacca
     3181 tgaaacctgc aggcaccagc caagccaatg gatacgccgg aagcggaaaa acaatattga
     3241 gcagaaccaa aatcacgaca aacagcggca gacccgccat caggttggca cgcctgtatg
     3301 ttgcgtacgg gtcggatgct tcttcaggtt cgcaatattc catgatttca gcctgtccgg
     3361 gctttatcca cagcaggctc ggacggtcgg tcatgccgtc tgaaccggca ggccgtcttt
     3421 ttcaaaaaac gccataccgc tgcaacttca tgcggctgta tggcgtaggc tttgcacttc
     3481 agacggcata tgcgtcccga agcagtttgg tgtcccagtc ggttcatgat tatataaaca
     3541 acttgggtgc ggataaacct ttgtttatct aaacccctgt tttctcaaaa attgattcaa
     3601 atcttcggca aatttccgat agcctttgcc gttggcgtgg atttggtcgg atttcagatt
     3661 attatcgccc aaaatttccg cccacgcgcc gccgaacagc ggaatgccgt attcctcgga
     3721 caaatcctca tacagcggat gatcgctcaa atgcccgaac aacgcgccca gtgtgatgtg
     3781 cggcacgccg acgaggacgg cggggatgtt ttccttctgc acggtttcga tgattttcgc
     3841 gatattggcg cgggtctgct ccttgggaac tttgcgcaga aagtcgttgc cgcctatgcc
     3901 gacaatcaca agcttgggtt tgcgtgccaa cagcgcgggc aggcgcgaca gggcttgggc
     3961 ggatgtatcg cccgatacgc cgccgttgac aatattccaa cccgtcagtt tttgcagttg
     4021 cgcggggtag gattcgccag ggtttgcgcc gtagccgaag gtaagcgaat cgcccaaggc
     4081 aagtacggtg cttccttcgg gaattttggc gtgggttcgg gcggattttc tgccgcaggc
     4141 ggtaaggagc aacgcgcctg cgccgaggag gaaggttctt ctgttcattg gtttttcaga
     4201 tggcatcgag ccatttcggg tggtatttca gggtttcacg gtaaaccgga cagctttcgg
     4261 cgtgcgcgcc tttgaggtag ccggtactca tcagaaattc gccgacgatt tcgccgccga
     4321 cgaatttgaa atgtttttta aagagtttaa cccattcgtc tttgcttcgc ggatggtgcg
     4381 tgtcgagcca gttcttgaac gagccgtatt cttgttgcaa cgcttggatt tgccgtgcat
     4441 tgaaaatggc ggcatcgatt ttcaggcggt tgcggacaat gcccgcgtcg gcaagcaggc
     4501 gttcgcggtc ggtgtcgtcg aaggcggcaa ccgtatcgat gtcgaaacct tcaaatgccg
     4561 tctgaaatgc ctgctgcttc ttcagcatca gcgtccagtt taatcctgcc tgattgattt
     4621 ccaacaccag ccgttcaaac agtccgttgt cgctgtcaat cggaaaaccg tattgcgtgt
     4681 cgtggtaatg tttgttcggg ttatcggtgt tttcgggaag tgaggcggca aattcgcaat
     4741 agttcacgtt ttactcgacc atctgttgcg ccgcctgttt cagtccctgt tcgagtgcgg
     4801 cggtcatcgc ggcgtagccg tcaccctgct gttcggtttc gatatggaag ggtctgttcg
     4861 taccgtcggg taggacggcg tagccgctga tgagggtttt gcccgtgtag ctgccttgga
     4921 atgcgtcgat atagaccgtc catttttcgg tactgccgct gcgtgaggca ggaacaaaga
     4981 tgcgtgtgtt gtccaaacgg ttgaatgcat tgctcaacgc cgcttcgagc atatcgtcca
     5041 aggtgtctgc ccaaacgtgg ttttgtgcgg tgttgaggcg gtaggggtcg gtttgataga
     5101 ccagtccgcc gcgtttgagc ggttcggcaa gacggacttc gacggcggtt tcgccgcctt
     5161 gtgttgcagg acggatgtag cggctgtcgg gcaacacgaa atattgtgtg ctttgcacag
     5221 taccgcaggc ggcaagcgtc agggcggcgg caatcgggaa gaggcgcatt atcggcttcc
     5281 tttcgggatg gggtctttgc tgctgctgtt gaaaatcagc gcgttgggtt tttctttcaa
     5341 agtattaatt acgggttgaa cgtcttttaa ggttttgtcc aaactttgca acgtattttg
     5401 tacgtcgccg tagataggcg attgaggcga tacgccttgc agggttgtgc gcaactcttt
     5461 cagggtttgg ttcaactcgt tcggaatgtt ttgcgtctgc ggattgccgg ccagtttgtc
     5521 aatggagctt agggcggcat tggcagattt gagtgcggac ttgagctcgg caagcgaacc
     5581 gttcaattcg gcaaccgtct tatccaaagg cagtttgtcg aacttgtcca gcaaatccac
     5641 cactttcgcc tgcaaatcgt ccaaaccgcc gccttgtgta gcgatgacgg tatcgcctgc
     5701 ataaacggta tgcggtcgca gcttgggcga agacgaaggc tgatcgttca actcaatcat
     5761 tttgctgccg gtcagcaggt tgttgctgga gatggtggcg gtcaggcctt tgtttaaagc
     5821 cgtctgaaat tgttgtttcc aatgctcttt gctttgttcg tcggcattga tttccaaacg
     5881 ggaaggctca atgcggatgc gcacgggaat ccagccgttt tcaaacaggt gcaggctgtc
     5941 gttgcggtca aaataaggga catcggaaac cacgccgaca ttcagccctt tgtattcaac
     6001 aggcgaaccg acggtcagtc cgcgcacgga ttgtttgaaa aacgcggtgt agtacagcga
     6061 gcggtcgtca ggcaggttgg cgacttcgct gcggctgtcg taaagcgtga agctgtcttc
     6121 gcttttgacg tttttactgt ttttggtttt cggcgaatca aatgaaatcg cgcccgacag
     6181 cagggcaggc agaggggcgg aattgagttt gatgccgctg cctgtggttt cgatattaat
     6241 gccgctttcc agccaaaaac ggctggcgga atgaatcagt ttgtcgttgg ggctttggat
     6301 gaagatggtg taatgcacgc tttggtcgga cgggtcgaaa tgcgcgcttt cgatttgccc
     6361 gaccataaag ttttcataca aaacagggct gttgacgttg aggatacggt cgtttttacc
     6421 aatcaaattc aagcgcagac cgctttgccc gatggcggta acgggcggaa tgtcctgcac
     6481 ttggaacacg tcttttgcct cgtcgctttt gccgggtgta aaggcgatgt acgaacccga
     6541 aagcagcgta cccaaaccgg ttacgccgct ttggtcgata cgcggcttga ccacccaaaa
     6601 ctgtgtgtcg ctgcggatga ggccggatac gtccgcattg agttgggcgg ttacttccac
     6661 gcctttctgg tcgtcgcgca gtttgattcg ggtaacgcgt ccgacatcga tgctcaatac
     6721 cttaatgacc gtattgttga cctcaatgcc ttccgcgctg tccatcaaga gcgtaaccac
     6781 aggccccctg ttgcggattt ccttaatcca cagccagcca ccggcaatca gcgcaatcag
     6841 cgggaccagc cagacggcgg agagcaaggt gttgtttttg cggacgcgtg cttgggcgtg
     6901 tccgtttgga ggagggctgt tgtcagtcat gtttttccgt ttcgttgaaa gcaatgccgt
     6961 ctgaagcgcg tttgtcccaa agcaggcgcg ggtcgaaata ataggcggac agcatcgtca
     7021 gaatcacgac caggcagaaa tagactgccg cactgcccgg aatgacgcgc gcggcataag
     7081 tgtggaacga acacatcaaa ataataatca caaaaatatc aatcatcgac cagcggccga
     7141 ccgcttcggt gatgcggtag aggtgcgaca atttctttgc acccgttggc aaagcgaagc
     7201 gggcggacgc aatcaaaacc gacattgccg caatcttcag taccggcacc aaaatactcg
     7261 cgctgaaaat aaccgccgca atcagcctgt cgccctcgtc ccacatataa gcgatgccgt
     7321 taaggatggt attgacctcc gtggcggcag gattggacga aatcataatc ggcaggatat
     7381 tggcagggaa atacaaaata accgccgccg tcagaaacgc cgacgaaata ctcagacttt
     7441 tcggccgtcg gcggtacagt tccgcgccgc acacaccgca gggggattcg gcactgtcgc
     7501 ggaaatacag gcagcggctg caacaggttt tgccttccga tgccgtctga accgcattat
     7561 cccccgtcag ccgcccgatt tgaaaataca cccaatgctg gggaacggat accgaagtcc
     7621 gaatcagcat aaccgacagc gcgaacatca gataaaacgc cgacccgaag cgaacctctg
     7681 ccacagacga gagcttgata tacgccacca gcgtggaaac aaaaaacaca tccaccatca
     7741 tcgcctgcct caagcgcacc atcacacgcg ttgccaaacg cagcgcagga tacacccgtt
     7801 tccgtatcag cgcggcatag acatacaggc acagcagcag aaacagaacc ggcgcgccga
     7861 aggtcagcac aaacatcact tcggccaaaa aaccataatc ctgaaacacc atcaggcgca
     7921 tcatctcggg cagcgaaagg acggatgccg cacccggtat cccgacctcg atatacgtca
     7981 taccgtaagc aaacgccatc aaaatcagcg aagccgccgc ataagcgggc ggggcggaaa
     8041 aaggatgcct gcccaccctg aagagcttat agccgcagcg cgggcagaac gccgcctccc
     8101 ccctgtccaa ccgaggcaca tccgcgcggc agccgcattc cgggcaatct accgtatgcg
     8161 gcggcagggc ttcgtcgcgg cagttgccgc gaaggctgtg ggggatattt tcggcaaacg
     8221 gcttcatcgg gaaagtggca aatataagtg gcggcattat aaaggaaaaa aggcgataca
     8281 cccaatcagg atgcaaaacc ggcaggttcg gcagtatgaa caaacccttg gtgtccggca
     8341 aaaatatttt ttcgagcggc tgtccgccga ctgccgaacc catttgataa aatcccgatt
     8401 ctgtaaagaa tagtaaaata cctgcttaaa aacatcacgc aaatgatatt ttttccaaaa
     8461 atatgtgata ataaatttcg tttatgattc tttattattt ttatagtgga ttaacaaaaa
     8521 tcaggacaag gcggcgaagc cgcagacagt acaaatagta cggaaccga
//
LOCUS       DAXHPV010000084         8562 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.084, whole genome shotgun sequence.
ACCESSION   DAXHPV010000084 DAXHPV010000000
VERSION     DAXHPV010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8562)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8562)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8562
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.084"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(77..595)
                     /locus_tag="ACFM6C_001312"
     CDS             complement(77..595)
                     /locus_tag="ACFM6C_001312"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase, GntK/IdnK-type"
                     /protein_id="HFC6158766.1"
                     /translation="MTTHFVVMGVCGCGKTTAALSLQKHLGQCPYAEGDEFHTQANRD
                     KMGAGIPLTDEDRYPWLGNLRDWMTQQAQNGANHTIVTCSALKRGYRDILRGAEGKAA
                     FIHLSPPQDINLERMMSRKGHYMKAGMLDSQLEILEELGEGEYGVKIANPGTPEAVEA
                     DILNWVASENLL"
     gene            complement(615..2000)
                     /locus_tag="ACFM6C_001313"
     CDS             complement(615..2000)
                     /locus_tag="ACFM6C_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003705069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HFC6158767.1"
                     /translation="MDGWTQTLSAQTLLGISAAAIILILILIVKFRIHALLTLVIVSL
                     LTALATGLPTGSIVNDVLVKNFGGTLGGVALLVGLGAMLGRLVETSGGAQSLADALIR
                     MFGEKRAPFALGVASLIFGFPIFFDAGLIVMLPIVFATARRMKQDVLPFALASIGAFS
                     VMHVFLPPHPGPIAASEFYGANIGQVLILGLPTAFITWYFSGYMLGKVLGRTIHVPVP
                     ELLSGGTQDNDLPKEPAKAGTVVAIMLIPMLLIFLNTGVSALISEKLVSADETWVQTA
                     KIIGSTPIALLISVLVALFVLGRKRGESGSALEKTVDGALAPVCSVILITGAGGMFGG
                     VLRASGIGKALADSMADLGIPVLLGCFLVALALRIAQGSATVALTTAAALMAPAVAAA
                     GFTDWQLACIVLATAAGSVGCSHFNDSGFWLVGRLLDMDVPTTLKTWTVNQTLIALIG
                     FALSALLFAIV"
     gene            2239..3780
                     /locus_tag="ACFM6C_001314"
     CDS             2239..3780
                     /locus_tag="ACFM6C_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFC6158768.1"
                     /translation="MDGRRWAVWGAFALLPSAFLAVMVVAPLWAVAAYDGLAWRAVLS
                     DAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLV
                     AGVGVLALFGADGLLWRGRQDTPYLLLYGNVFFNLPVLVRAAYQGFVQVPAARLQTAR
                     TLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCFSGFGLALLLGGSRYATVEVEIYQL
                     VMFELDMAVASVLVWLVLGVTAAAGLLYAWFGRCAVSDKAVSPVMPSPPQSVGEYVLL
                     AFAAAVLSVCCLFPLLAIVVKAWSADESWRVLMESETWQAVWNTLRFSAAAVYAAAVL
                     GVVYAAAARRSAWMRGLMFLPFMVSPVCVSAGVLLLYPQWTASLPLLLAMYALLAYPF
                     VAKDVLSAWDALPPDYGRAAAGLGANGFQTAYRITFPLLKPALRRGLTLAAATCVGEF
                     AATLFLSRPEWQTLTTLIYAYLGRAGADNYARAMVLTLLLSAFALGIFLLLDGGEGGK
                     QTETL"
     gene            3809..4408
                     /locus_tag="ACFM6C_001315"
     CDS             3809..4408
                     /locus_tag="ACFM6C_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-class carbonic anhydrase"
                     /protein_id="HFC6158769.1"
                     /translation="MSELDNILAHNRQFVESGEYEKYFTDKYPERGLAVLSCMDARII
                     GLLPDALGLKNGDAKLIKNAGALVTHPWGSVMRSLLVAVFELKVREIMVIAHHDCGMQ
                     GLNAEEFLGRVRESRIPEDRIETLRYAGIDLDGWLTGFDNVEDSVRHTVDLIRNHPLM
                     PRHIAVHGLVIHPVTGKLTLVVDGSVSDGIDLSEGMETS"
     gene            4405..5010
                     /gene="nadD"
                     /locus_tag="ACFM6C_001316"
     CDS             4405..5010
                     /gene="nadD"
                     /locus_tag="ACFM6C_001316"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HFC6158770.1"
                     /translation="MKKIGLFGGTFDPIHNGHLHIARAFADEIGLDTVVFLPAGGPYH
                     KDAASTSAADRLAMVELATAEDARFAVSDCDIVREGATYTFDTVQIFRQQFPSAQLWW
                     LMGSDSLMKLHTWKKWQMLVRETNIAVAMRQGDSLHQTPRELHAWLGKSLQDGSVRIL
                     SAPMHNVSSTEIRRNLAGQGVSDGIPPAAARYIREHGLYEK"
     gene            5069..5455
                     /gene="rsfS"
                     /locus_tag="ACFM6C_001317"
     CDS             5069..5455
                     /gene="rsfS"
                     /locus_tag="ACFM6C_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HFC6158771.1"
                     /translation="MNEQELQDLQKMVEVAVNALEDIKAKDISVLETQDKTSLFARMI
                     IASGDSTRQVKALANNVAVDLKEAGFEILSTEGDSGEWTLVDAGDLVVHVMLPAVRDF
                     YDIDTLWGGEKPSFHAGMQKPWHAAD"
     gene            5509..5979
                     /gene="rlmH"
                     /locus_tag="ACFM6C_001318"
     CDS             5509..5979
                     /gene="rlmH"
                     /locus_tag="ACFM6C_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HFC6158772.1"
                     /translation="MNITVLAVGTKMPRWVDEAVAEYAKRFGRDVAYALKEIKPEKRG
                     AGVNAAQGMAAEEKRILEAIPQGAFLVVLDERGKAPTSVELAEHLKTWQQNGEHVCFV
                     IGGADGMTDRLKQQARIMMRLSSLTLPHGMVRVLLTEQLYRAASILHNHPYHRE"
     gene            6052..6318
                     /locus_tag="ACFM6C_001319"
     CDS             6052..6318
                     /locus_tag="ACFM6C_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012779572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HFC6158773.1"
                     /translation="MARMVFCVKLNKEAEGMKFPPLPNELGKRIFENVSQEAWAAWTR
                     HQTMLINENRLSLADPRAREYLAQQMEQYFFGDGADAVQGYVPQ"
     gene            6475..7158
                     /locus_tag="ACFM6C_001320"
     CDS             6475..7158
                     /locus_tag="ACFM6C_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1 family protein"
                     /protein_id="HFC6158774.1"
                     /translation="MQHDVYDYTAHTVSKNTVLQKTYRLLGFSFIPAAAGAALAANAG
                     FNFYAAFGSRWIGFAVVLAFFYGMIHFIEKNRYSNTGVTLLMVFTFGMGVLIGPVLQY
                     ALHIADGAKIVGIAAAMTAAVFLTMSALARRTRLDMNALGRFLTVGAVILMVAVVANL
                     FLGIPALALTISAGFVLFSSLMIMWQVRTVIDGGEDSHISAALTLFISLYNIFSSLLN
                     ILLSLNGED"
     gene            7282..7794
                     /gene="coaD"
                     /locus_tag="ACFM6C_001321"
     CDS             7282..7794
                     /gene="coaD"
                     /locus_tag="ACFM6C_001321"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HFC6158775.1"
                     /translation="MLPNTPRRAVYAGSFDPPTLGHLWMIRQAQSMFDELIVAIGINP
                     DKRSTYTVAERQDMLCDITKMFPNVRTDVFENRFLVHYAREVDAGFIVRGIRSASDYE
                     YERSMRHINSDLAPEISTVFLMPPREIAEVSSTMVKGLVGPEGWTETIHRYVPQAVYE
                     KILAEHQHEN"
     gene            7826..8479
                     /locus_tag="ACFM6C_001322"
     CDS             7826..8479
                     /locus_tag="ACFM6C_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01621 family pseudouridine synthase"
                     /protein_id="HFC6158776.1"
                     /translation="MLEILFRHQDFVAINKPGGISVHQDSGETGLARTLAIQLGVERV
                     WLLHRLDKQTSGILLFALNRESASALSGQFAGKSIKKTYLALSDRKPSKKQGWIKGGM
                     EKSRRGMWKLTRNTENIAVTRFHSISIAEKLRLFILEPHTGKTHQLRVAMKSLGSPIL
                     GDSLYGGTESETMFLYAWKIQFAYQNRQIEIVAPLKNEWQTENISHALEEFYMAKAG"
BASE COUNT         1868 a         2270 c         2496 g         1928 t
ORIGIN      
        1 aatgtaatcc attctgttcc cgatgtttat gccgtctgaa acccatcctg tgtcgggctt
       61 cagacggcat attgcttcaa agcaggtttt ccgaggcaac ccagttcaga atatcggctt
      121 cgaccgcttc gggcgtgccg gggttggcga ttttgacccc gtattcgcct tcgcccagtt
      181 cctcgaggat ttccagttgc gaatcgagca tccctgcttt catgtaatgt cctttgcgcg
      241 acatcatgcg ctcgaggttg atgtcttgcg gcggactgag gtggatgaag gcagctttgc
      301 cttcggctcc gcgcagaatg tcgcggtagc cgcgtttgag ggcggaacag gttacgatgg
      361 tgtggttcgc accgttttgc gcctgttgcg tcatccagtc gcgcagattg cccaaccacg
      421 gatagcggtc ttcatcggtc agcggaatac ccgcgcccat cttgtcgcgg ttggcttggg
      481 tgtggaactc gtcgccttcg gcatagggac attgaccgag gtgtttctgc agggacagcg
      541 cggcggtggt cttgccgcag ccgcatacgc ccataacgac aaaatgcgta gtcatttact
      601 atcctttccg tctgtcagac gatggcgaac agcagtgcgg acaaggcaaa gccgatgagt
      661 gcgatgaggg tttggttgac cgtccaggtt ttcagcgtgg tcggtacgtc catgtccaag
      721 aggcggccga ccagccagaa gccggagtcg ttgaagtggc tgcaaccgac cgaacctgcc
      781 gccgttgcca atacgataca ggcgagctgc cagtcggtaa agccggcggc ggcaacggca
      841 ggagccatca gcgcggcggc ggtggtcagg gcgacggttg ccgaaccttg cgcgatacgc
      901 agtgccaagg cgacaaggaa acagcccaaa aggacgggaa tgcccaaatc cgccatgctg
      961 tcggcgagtg ccttgccgat gccggaagcg cgcaaaacgc cgccgaacat accgcccgcg
     1021 ccggtaatca gaatcacgga acagacgggg gcgagtgcgc cgtccacggt tttttccaac
     1081 gcgctgccgc tttcgccgcg tttgcgtccc aagacaaaca gtgcgaccaa tacggaaatc
     1141 agaagggcga tcggtgtcga accgattatt tttgccgtct gaacccaggt ttcgtccgca
     1201 cttacgagtt tttcgctgat gagggccgat acgccggtat tcaggaaaat cagcagcatg
     1261 ggaatcagca tgatggcgac gaccgttcct gctttggcag gttctttcgg caggtcgttg
     1321 tcttgcgtgc cgccgctgag cagttcggga acgggaacat ggatggtgcg ccccaacact
     1381 ttgccgagca tatagccgct gaaataccat gtgatgaagg cggtcggcag acccaaaatc
     1441 aaaacttggc cgatgttcgc gccgtaaaat tcggaagcgg caatcgggcc cggatggggc
     1501 ggcaggaaga cgtgcatgac ggaaaatgcg ccgatggagg caagcgcgaa gggcagtacg
     1561 tcctgtttca tgcgccgtgc ggtggcgaac acgatgggca gcatgacgat tagtccggca
     1621 tcgaagaaaa tcgggaagcc gaaaatcagc gaggcaacgc ccagcgcgaa cggtgcgcgt
     1681 ttttcgccga acatccggat cagcgcgtcc gccagcgact gtgcgccgcc ggatgtttcg
     1741 accaaacgtc cgagcatcgc gcccaggccg accagaagcg ccacgccgcc gagcgtgccg
     1801 ccgaagtttt tgaccagtac gtcgttgaca atgctgcctg tgggcaaacc ggttgccaaa
     1861 gccgtcagca ggctgacgat gaccagtgtc agcagcgcgt ggatgcggaa tttgacgatt
     1921 aaaatcagaa tgaggatgat tgccgccgcc gaaatgccca acagggtttg cgcggacagc
     1981 gtctgtgtcc agccgtccat ttgtaaagcc tttctctgta ataaaagtac aaaattgtca
     2041 ggttttttta agttgtgcga aaacgatagc acaaatcggg cggtaagttg tttgtctgaa
     2101 gttatattcc tgtttatttg aacgatttat ttcagacggc gggaggaagg cggatacggt
     2161 atgtagtcgg attgaaatat acggtatgtg gggcttttgg gtacaatcgc aacatcagtg
     2221 tttcaagtgg ggaaggcgat ggatggacgg cgttgggcgg tatggggtgc ttttgccctg
     2281 ctgccttcgg cttttttggc ggtaatggtc gttgcgcctt tgtgggcggt ggcggcgtat
     2341 gacggtttgg cgtggcgcgc ggtgctgtcg gatgcctata tgctcaaacg tttggcgtgg
     2401 acggtatttc aggcagcggc aacctgtgtg ctggtgctgc ctttgggcgt gcctgtcgcg
     2461 tgggtgctgg cgcggctggc gtttccgggg cgggctttgg tgctgcgcct gctgatgctg
     2521 ccttttgtga tgcccacgtt ggtggcgggc gtgggcgtgc tggctctgtt tggggcggac
     2581 ggcctgttgt ggcgcggacg gcaggatacg ccgtatctgt tgttgtacgg caatgtgttt
     2641 ttcaaccttc ctgtgttggt cagggcggcg tatcaggggt ttgtgcaagt gcctgcggca
     2701 cggcttcaga cggcacggac gttgggcgcg ggggcgtggc ggcggttttg ggacattgaa
     2761 atgcccgttt tgcgcccgtg gcttgccggc ggcgtgtgcc ttgtcttcct gtattgtttt
     2821 tcggggttcg ggctggcatt gctgctgggc ggcagccgtt atgccacggt cgaagtggaa
     2881 atttaccagt tggtcatgtt cgaactcgat atggcggttg cttcggtgct ggtgtggctg
     2941 gtgttggggg taacggcggc ggcagggttg ctgtatgcgt ggttcggcag gtgcgcggtt
     3001 tcggataagg cggtttcccc tgtgatgccg tcgccgccgc agtcggtcgg ggaatatgtg
     3061 ctgctggcgt ttgcggcggc ggtgttgtct gtgtgctgcc tgtttccttt gttggcaatt
     3121 gttgtgaaag cgtggtcggc cgacgaatcg tggcgtgtgt taatggaaag tgaaacgtgg
     3181 caggcggtgt ggaatacttt gcgcttctcg gcggcggcgg tgtatgcggc ggcggttttg
     3241 ggtgtggtgt atgcggcggc ggcgcggcgg tcggcgtgga tgcgcgggct gatgtttttg
     3301 ccgtttatgg tgtcgccggt ttgtgtttcg gcgggcgtgc tgctgcttta tccgcagtgg
     3361 acggcttcgt tgccgctgct gctggcgatg tatgcgctgc tggcgtatcc gtttgtggca
     3421 aaagatgttt tatcagcctg ggatgcactg ccgccggatt acggcagggc ggcggcgggt
     3481 ttgggtgcaa acggctttca gacggcatac cgcatcacgt tccccctttt gaaaccggcg
     3541 ttgcggcgcg gtctgacttt ggcggcggca acctgcgtgg gcgaatttgc ggcgacattg
     3601 ttcctgtcgc gtccggaatg gcagacgctg acgactttga tttatgccta tttgggacgc
     3661 gcgggtgcgg acaattacgc gcgggcaatg gtgttgacat tgctgttgtc ggcgttcgcg
     3721 ctgggcattt tcctgctgtt ggacggcggc gaaggcggaa aacagacgga aacgttataa
     3781 tgtgaaccct ttttcagagg acggcaaaat gagcgagttg gataacatcc ttgcccataa
     3841 ccggcagttt gtcgagtcgg gcgaatatga aaaatacttt accgacaaat accccgaacg
     3901 cgggctggca gttttgtcct gtatggatgc gcggattatc gggctgctgc ccgacgcgtt
     3961 gggtttgaaa aacggcgatg ccaagctgat taaaaatgcc ggcgcgctgg ttacgcaccc
     4021 gtggggttcg gtgatgcgga gtcttttggt tgccgtgttt gaattgaagg tcagagagat
     4081 tatggtcatc gcccatcacg attgcggtat gcaggggctg aatgccgaag aattcctcgg
     4141 gcgcgtccgg gaaagccgga ttcccgaaga ccgtatcgaa accctgcgtt atgccggtat
     4201 cgacctcgac ggctggctga ccggtttcga caacgtcgaa gacagcgtgc gccacacggt
     4261 ggaccttatc cgtaaccatc cgctgatgcc gcgccatatc gccgttcacg gactggtcat
     4321 ccatcccgtt accggcaaac tgacgctggt tgtggacggc agtgtttcag acggcataga
     4381 cttatcggaa ggaatggaaa catcatgaag aaaatcggac tgttcggcgg cactttcgac
     4441 ccgatacaca acgggcatct tcatatcgcc cgtgcctttg ccgatgaaat cgggttggac
     4501 acggttgttt tcctgccggc aggcggcccg tatcacaaag acgcagcctc cacttccgcc
     4561 gccgaccgcc ttgccatggt cgaactggcg acggcagaag acgcgcgttt tgccgtcagc
     4621 gattgcgaca tcgtccgaga aggtgcaacc tatacttttg ataccgtcca aatcttccgc
     4681 cagcagttcc catccgcgca actttggtgg ctgatgggca gcgacagcct gatgaagctg
     4741 cacacatgga aaaaatggca gatgctcgtg cgcgaaacca atatcgccgt cgccatgcgg
     4801 cagggcgaca gcctgcacca aaccccgcgc gaactgcacg cgtggctggg caagtccctt
     4861 caggacggca gcgtccgcat cttgtccgcc ccgatgcata atgtgtcgtc aacggaaatc
     4921 cgccgcaacc ttgccggcca aggcgtttca gacggcatcc cgcctgccgc cgcacgctac
     4981 atccgcgaac acggtttgta tgaaaaataa agtcaaatca gtaagaaacg gctataatgc
     5041 cgtctgaaaa catcccgtta ggaacataat gaacgaacaa gaactgcaag acctgcaaaa
     5101 aatggtcgag gtcgccgtca acgccctcga agacatcaaa gccaaagaca tttccgttct
     5161 cgaaacgcaa gacaaaactt cgctgtttgc cagaatgatt atcgccagcg gcgacagtac
     5221 gcgccaagtc aaagcccttg ccaacaacgt tgccgtcgat ttgaaagaag ccggttttga
     5281 aatcctcagt accgaaggag acagcggcga atggacgctg gttgacgcag gcgacctcgt
     5341 tgtccacgtc atgctccctg ccgtgcgcga cttctacgac atcgacaccc tctggggcgg
     5401 cgagaaaccg agtttccacg ccggaatgca gaagccgtgg cacgctgcag actgattccc
     5461 gatgccgtct gaatgttcag acggcatttt cctgtaaggg agaaagcatt gaatattacc
     5521 gttttggcag tcggcaccaa aatgccgcgc tgggttgatg aggccgtcgc cgaatacgcc
     5581 aaacgcttcg gacgcgacgt cgcctacgca ctcaaagaaa tcaaacccga aaaacgcggc
     5641 gcgggcgtga atgccgccca aggtatggcg gcggaagaaa aacgcatcct cgaagccata
     5701 ccgcaaggcg cgttcctcgt cgtccttgac gaacgcggca aagcaccgac ctccgtcgag
     5761 ctggcggaac acctcaaaac ttggcagcaa aacggcgaac acgtctgctt cgtcatcggc
     5821 ggcgcggacg gaatgaccga ccgcctcaaa caacaagccc gcataatgat gcgcctgtcc
     5881 agcctgaccc tgccgcacgg gatggtgcgc gtccttctga ccgagcagct ctaccgcgcc
     5941 gcctccatcc tgcacaacca tccctatcat cgggaataag aaggcttttg tccgtatccc
     6001 taatcggtta aaattacccc gttatttctg aacacagcaa aggaatccgc tatggcacgc
     6061 atggtattct gcgtcaagct caacaaagaa gccgaaggca tgaaatttcc accgcttccc
     6121 aacgaattgg gcaagcgcat ttttgaaaac gtatcgcaag aagcgtgggc ggcgtggacg
     6181 cgccaccaaa cgatgctgat taacgaaaac cgtttaagcc tcgccgatcc gcgcgcgcgc
     6241 gaatacctgg ctcagcagat ggagcagtat ttcttcggcg acggcgcgga tgccgttcag
     6301 ggatacgttc cgcaataacg gttttccgtt ttgaacacag gctgtccgaa actgcttcag
     6361 acggccttta aaatacgccg gacaacttta tcttcacgca accggacaaa ttttgacatt
     6421 gggcaatgtt aaaatccccc attattccca accgcgcttt caggagcaga tgatatgcaa
     6481 cacgacgttt acgactacac cgcgcatacg gtttctaaaa acaccgtcct gcagaaaacc
     6541 taccgcctgc tcggattttc attcattccg gctgccgcag gcgcggcact tgccgccaat
     6601 gccggtttca atttttacgc cgccttcggt tcgcgctgga tagggtttgc cgtcgtgttg
     6661 gcgtttttct acggtatgat ccacttcatc gagaaaaacc gttacagcaa taccggcgtt
     6721 accctgctga tggtattcac attcggtatg ggcgtattga tcggccccgt gctgcaatac
     6781 gcgctccata ttgccgacgg tgcgaaaatc gtcggcattg ccgccgcgat gaccgccgcc
     6841 gtctttttaa cgatgtccgc cttggcgcgc cgaacccggc tcgatatgaa cgcgctcgga
     6901 cgcttcctga ccgtaggtgc ggtcattctg atggtcgccg tggttgccaa tctgtttttg
     6961 ggtattcccg cactcgccct gaccatttcc gccggttttg tcttgttcag ttccttaatg
     7021 attatgtggc aggtacgcac cgtcatcgac ggcggcgaag acagccacat cagcgcggca
     7081 ctgacactgt ttatctcgct ttacaacatc ttcagcagcc tgctgaacat cctgttgtct
     7141 ttaaacggcg aggattgatg ccggtaaaac gccgtccgac tatgccgtct gaaaatgctt
     7201 cagacggcat tttactttgg gcatacaata cggatgcaca cgcaccaaca cacagccgac
     7261 tatgaagccg ggaggaatca aatgttaccg aatacaccgc gccgcgccgt ttatgccggc
     7321 agtttcgatc cgcccacatt ggggcatctg tggatgatac ggcaggcgca atctatgttt
     7381 gacgaactca tcgtcgccat cggcattaac cccgacaaac gcagcaccta taccgtcgct
     7441 gaaaggcagg atatgttgtg cgatattact aaaatgtttc ccaacgtcag aaccgatgta
     7501 tttgaaaacc gatttctggt gcattacgcc cgtgaggtag atgcaggatt catcgtgcgc
     7561 ggcatccgtt ctgcttcgga ttacgaatac gaacgttcca tgcgccatat caacagcgac
     7621 ctcgcccccg aaatatccac cgtattcctc atgccgccgc gcgaaatcgc cgaagtgtcg
     7681 tccactatgg tcaaaggact ggtcgggccg gaaggctgga cggaaacgat ccaccgctac
     7741 gtgccgcaag ctgtgtacga aaaaatcctt gccgaacatc aacacgaaaa ttgaaccctt
     7801 ctatttttgc aaggcatata tggatatgtt ggaaattttg ttccgccatc aagacttcgt
     7861 cgccatcaac aaaccgggcg gcatatccgt ccaccaagac agcggcgaga ccggactggc
     7921 ccgaacactc gccatacagt tgggcgtaga gcgtgtgtgg ctgctgcacc gattggacaa
     7981 acagaccagc ggcattttac tgtttgccct caacagagaa agcgcgtccg cccttagcgg
     8041 acagtttgcc ggcaaaagca tcaaaaaaac ctatttggca ctatccgacc gcaaaccgtc
     8101 caaaaagcag ggttggatta aaggcggaat ggaaaaatcc agacgcggaa tgtggaagtt
     8161 gacgcgcaat acagaaaata tcgccgttac ccgattccac agcatcagta tcgccgaaaa
     8221 actgcggctg ttcatcctgg aaccgcatac gggcaaaacg caccaattga gagtggcgat
     8281 gaaaagtttg ggcagtccga ttctgggtga cagcttatac ggcggaacag aatccgaaac
     8341 catgtttctg tatgcatgga aaatacaatt tgcctaccaa aaccgacaaa tcgaaattgt
     8401 tgcaccctta aaaaacgaat ggcagactga aaatatctct catgcgctgg aagaatttta
     8461 tatggcaaaa gcaggttaat aaatataaat taatttataa acaatatgat aaatattttt
     8521 ataaaaattt ttcaagaaaa cggttgactg caaatctctt ca
//
LOCUS       DAXHPV010000085         8399 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.085, whole genome shotgun sequence.
ACCESSION   DAXHPV010000085 DAXHPV010000000
VERSION     DAXHPV010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8399
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.085"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(60..1505)
                     /gene="zwf"
                     /locus_tag="ACFM6C_001323"
     CDS             complement(60..1505)
                     /gene="zwf"
                     /locus_tag="ACFM6C_001323"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HFC6158777.1"
                     /translation="MSTQTNFDLVLFGATGDLAMRKLLPCLYQAHVAGLLHPEGRILG
                     VSRSELDTEGFLAKVETSSKIHVKENFSDEAWASFVERFAYLKVDVTQPDDFAALGDL
                     VKARKETDNVVIYLSTAPKFFAQTCENLAKIGLNADNVRVVLEKPLGTDLASSQQINT
                     DVARYFKEGQIYRIDHYLGKESLQNLLALRFANVMFEPLWNNKYIESVQLTIAEQLGV
                     EERGEFYDITGALRDMVQNHLMQMLCMTAMEAPASLDADAVRDEKVKVIKSLKPLTVE
                     SVNENVVRGQYTAAKGMNGYLEEINVPQDSFTETYVAIKAEIENERWKGVPFYLRTGK
                     RMAGKVAEIVLNFKDLNSHIFEGSRTAPNRLVIELQPYESVRLYTQMKTPGAGNKVET
                     VPLATDLGKALESRRAEAYERLLLDVINGKLALFNRRDELEAAWEYVMPILENWTNNT
                     TPPHGYGAHSWGPEAARELLARDGHKWHEEQ"
     gene            2022..3857
                     /gene="edd"
                     /locus_tag="ACFM6C_001324"
     CDS             2022..3857
                     /gene="edd"
                     /locus_tag="ACFM6C_001324"
                     /EC_number="4.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004456 - phosphogluconate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009255 - Entner-Doudoroff pathway through
                     6-phosphogluconate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
                     /protein_id="HFC6158778.1"
                     /translation="MNTTPIHSKLAEITGRIIERSRPTREKYLAKIRSAKQMGRLERN
                     QLGCSNLAHGYAAMPKSIKIEMLQETVPNLGIITAYNDMVSAHQPFKDFPDQIKDEAQ
                     KNGATAQVAGGTPAMCDGITQGYAGMELSLFSRDVIAMSTAVGLSHQMFDGSLFMGVC
                     DKIVPGLMIGALSFGHIPGIFVPAGPMSSGIGNKEKARTRQLFAEGKVGRNELLKSEM
                     GSYHSPGTCTFYGTANSNQMMMEMMGVHLPAAAFVHPYTDLREALTRYAAGHLARGIK
                     NGTIKPLGEMLTEKSFINALIGLMATGGSTNHTMHLVAMARAAGVILNWDDFDEISSI
                     IPLLIRVYPNGKADVNHFTAAGGLPFVIRELLNAGLLHDDVDTVVGHGMRHYTKEPFL
                     IDGKLEWREAPETSGNDDILRKADNPFSPDGGLRLMKGNIGRGVIKVSAVREGCRIIE
                     APAIVFNDQREVLAAFERGELERDFVCVVRYQGPRANGMPELHKLTPPLGILQDRGFK
                     VALLTDGRMSGASGKVPASIHMTPEALMGGNIAKIRTGDLIRFDSVTGELNVLINEAE
                     WNAREVESIDLGANQQGCGRELFANFRSMTSSAETGAMSFGGEFA"
     gene            4038..4676
                     /locus_tag="ACFM6C_001325"
     CDS             4038..4676
                     /locus_tag="ACFM6C_001325"
                     /EC_number="4.1.2.14"
                     /EC_number="4.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016833 - oxo-acid-lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HFC6158779.1"
                     /translation="MSKLTPREILTAGAVVPVMAIDDLSTAVDLSHALVEGGIPTLEI
                     TLRTPVGLDAIRLIAKEVPNAIVGAGTVTNPEQLKAVEDAGAVFAISPGLHESLAKAG
                     HNSGIPLIPGVATPGEIQLALEHGIDTLKLFPAEVVGGKAMLKALYGPYADVRFCPTG
                     GISLATAPDYLALPNVLCVGGSWLTPKEAVKNKDWDTITRLAKEAAALKPKA"
     gene            4691..4909
                     /locus_tag="ACFM6C_001326"
     CDS             4691..4909
                     /locus_tag="ACFM6C_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158780.1"
                     /translation="MPSEALSSLRRHFAAWRRSRHTRQHHSDILPLKCPSAFRIIKIT
                     FSSFDSSRTAHTTRLKKCRLKRIQTASA"
     gene            complement(4933..5974)
                     /locus_tag="ACFM6C_001327"
                     /pseudo
     CDS             complement(4933..5974)
                     /locus_tag="ACFM6C_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225132.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
     gene            6137..7177
                     /gene="mutY"
                     /locus_tag="ACFM6C_001328"
     CDS             6137..7177
                     /gene="mutY"
                     /locus_tag="ACFM6C_001328"
                     /EC_number="3.2.2.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HFC6158781.1"
                     /translation="MNTPIPFSERLIRWQKQHGRHHLPWQVKNPYCVWLSEIMLQQTQ
                     VATVLDYYPRFLEKFPTVQTLAAAPQDEVLSLWAGLGYYSRARNLHKAAQQVVRQFGG
                     TFPSERKDLETLCGVGRSTAAAICAFSFNRRETILDGNVKRVLCRVFARDGNPQDKKF
                     ENSLWTLAESLLPSENADMPAYTQGLMDLGATVCKRTKPLCHQCPMADICEAKKQNRT
                     SELPRKKTAAEVPTLPLYWLIIRNRNGAILLEKRPAKGIWGGLYCVPCFESLNGLSDF
                     AAKFSLTMADMDEQTALTHRLTHRLLMITPFEGQMPSESPSDGIWIKPTHLKDYGLPK
                     PLEIYLNGNRLE"
     gene            7594..8154
                     /gene="sodC"
                     /locus_tag="ACFM6C_001329"
     CDS             7594..8154
                     /gene="sodC"
                     /locus_tag="ACFM6C_001329"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Cu-Zn] SodC"
                     /protein_id="HFC6158782.1"
                     /translation="MNMKTLLALAVSAVCSVGVAQAHEHNTIPKGASIEVKVQQLDPV
                     NGNKDVGTVTITESNYGLVFTPDLQGLSEGLHGFHIHENPSCEPKEKEGKLTAGLGAG
                     GHWDPKGAKQHGYPWQDDAHLGDLPALTVLHDGTATNPVLAPRLKHLDDVRGHSIMIH
                     TGGDNHSDHPAPLGGGGPRMACGVIK"
BASE COUNT         2119 a         2299 c         1990 g         1991 t
ORIGIN      
        1 tgctttactt gcgttcagac ggcatttcaa accccatgcc gtctgaacgc attattgtat
       61 tactgctctt cgtgccactt gtgtccgtcg cgcgccaata gttcgcgcgc ggcttcaggc
      121 ccccacgagt gtgcgccgta gccgtgcggc ggcgtggtgt tatttgtcca gttttccaaa
      181 atcggcatca catattccca cgcggcttca agttcgtcgc ggcggttgaa caaagcgagt
      241 ttgccgttaa tcacatccag cagcaggcgc tcgtaagctt ccgcgcggcg gctttccaat
      301 gctttgccca aatcggttgc cagcggcacg gtttcgacct tatttcctgc ccccggggtt
      361 ttcatctgcg tatagaggcg cacggattca tatggttgca actcgataac gagccggttg
      421 ggcgcggtgc ggctgccttc aaaaatatgg ctgttcaaat ctttgaagtt caaaacgatt
      481 tccgccactt tgcccgccat gcgcttgccg gtacgcaggt agaagggaac gcccttccag
      541 cgttcgtttt cgatttcggc tttaatggcg acgtaggttt cggtaaagct gtcttgcgga
      601 acgttgattt cttcaagata gccgttcatg cctttggcgg cggtatattg tccgcgcacg
      661 acattttcat tgacagattc gacggtcagc ggcttcaatg acttgatgac tttgactttt
      721 tcatcgcgca ccgcgtcggc atccaagctg gcgggggctt ccatcgcagt catgcacagc
      781 atttgcatca agtggttttg caccatatcg cgcaaggcgc cagtaatgtc gtaaaactcg
      841 ccgcgctctt ccacaccgag ctgttcggcg atggtcaact gcacgctttc gatgtattta
      901 ttgttccaca gcggctcgaa cattacattg gcaaaacgca gcgcaagcag gttttgcagg
      961 ctttctttgc caaggtagtg gtcgatgcgg taaatttgcc cttctttgaa ataacgcgca
     1021 acatcggtat tgatttgctg ggaagaagcc aaatccgtac ccaacggttt ttccaaaacc
     1081 acacgcacgt tgtcggcgtt caaaccgatt ttggcaaggt tttcacatgt ttgcgcgaag
     1141 aatttcggcg cggtggaaag atagatgacg acattgtcgg tttctttgcg cgctttgacc
     1201 aaatcgccca aagcggcaaa atcgtccggc tgcgtaacat cgactttgag atatgcgaaa
     1261 cgttcgacaa acgatgccca agcctcatcg gaaaaatttt ctttcacatg gattttggaa
     1321 ctggtttcta ccttcgccag aaaaccttcg gtatccaact cgctgcggct gacccccaaa
     1381 atacgccctt cgggatgaag cagaccggca acatgcgcct ggtacagaca gggcaacagc
     1441 ttgcgcatcg ccaaatcgcc ggtcgcaccg aacaacacca aatcaaaatt tgtttgtgta
     1501 ctcatcgtat tatctcgtca ggaaagaatt tttcgatgcc gtctgaaacc tgtttccccc
     1561 atcacgctgc atcgcaatat cggaaacaaa ggcaggcggc ataatgagta gtaatactac
     1621 acaccgctac actttttgtc tattcccaat ttttacaatt tatttgacct agtccaaaaa
     1681 tcgggcaggt ttcccctatt ccgttacaac aatcgaaaga ttctgcgatt taaatcaaat
     1741 ttcttttcga tgtctgattt ttttgtaaca aaattacaaa ttttgtacta taataacacc
     1801 cgcttcccac tttcagacgg tatacctttt aaaatatagt ggattaacaa aaatcaggac
     1861 aaggcgacga agccgcagac agtacagata atacggcaag gcgaggcaac gccgtactgg
     1921 tttttgttaa tccactatac tcaccgtctg aatacccgat acaaaaatca gaaacgcaca
     1981 aacaaatccc caataccccc cgttccgaca ggagaccgac cgtgaacact actcctatcc
     2041 actccaaact cgccgaaatc accgggcgca ttattgaacg cagccgtccg acgcgtgaaa
     2101 aatatctggc gaagatccgc agtgccaaac aaatgggacg cttagagcgc aaccagctcg
     2161 gttgctccaa cttggcgcac ggctatgctg ccatgcctaa aagtatcaaa atcgaaatgc
     2221 ttcaggaaac cgtccccaac ttaggcatca tcaccgccta caacgacatg gtttccgcac
     2281 accagccgtt taaagacttc cctgaccaaa tcaaagacga agcgcagaaa aacggcgcga
     2341 ccgcccaagt cgccggcggc acacccgcca tgtgcgacgg catcacgcaa ggctacgccg
     2401 gtatggaact gtcgctgttc tcccgcgacg tgattgccat gagtaccgcc gtcgggctgt
     2461 cgcatcaaat gtttgacggc agcctgttta tgggcgtatg cgacaaaatc gttccgggtt
     2521 tgatgatagg cgcgctttcg ttcggtcata ttccgggtat cttcgtcccc gcaggcccga
     2581 tgtccagcgg tatcggcaac aaagaaaaag cccgcacccg ccagcttttc gccgaaggca
     2641 aggtcggacg caacgaactt ttgaaaagcg aaatgggttc ttaccacagc ccgggcacct
     2701 gcactttcta cggcacggca aactccaacc aaatgatgat ggaaatgatg ggcgtgcacc
     2761 tgcctgccgc cgccttcgtc cacccttaca ccgacctgcg cgaagcccta acccgctacg
     2821 ccgccggaca cctcgcgcgc ggcatcaaaa acggcacgat taaacctttg ggcgaaatgt
     2881 tgaccgaaaa atcctttatc aacgccttga ttggcctgat ggcaaccggc ggttcgacca
     2941 accacaccat gcacctcgtt gccatggcac gcgccgccgg cgtgattttg aactgggacg
     3001 acttcgacga aatttcctcc atcatcccgc tgctcattcg cgtttatccg aacggcaagg
     3061 ccgacgtgaa ccactttacc gcagcgggcg gactgccttt cgttatccgc gaattgctga
     3121 atgcaggcct gttgcacgac gatgtcgata ccgtcgtcgg acacggtatg cgccactaca
     3181 ccaaagagcc tttcctcatc gacggcaaac tcgaatggcg cgaagccccc gaaaccagcg
     3241 gcaacgacga catcctgcgt aaagctgaca acccgttctc ccccgacggc ggtctgcgcc
     3301 tgatgaaagg caacatcgga cgtggcgtga ttaaagtgtc cgccgtgcgc gaaggctgcc
     3361 gcattattga agcgcctgcc atcgtgttca acgaccaacg cgaagtgttg gctgcgtttg
     3421 aacgcggcga gttggaacgc gattttgtgt gcgtcgtccg ctaccaaggc ccgcgtgcca
     3481 acggtatgcc cgaattgcac aaactgaccc cgcctttagg catcctgcaa gaccgcggct
     3541 tcaaagtggc gctgctgacc gacggccgta tgtccggcgc gtccggcaaa gttccagcct
     3601 ccatccacat gacacccgaa gccctgatgg gcggcaacat cgccaaaatc cgtaccggcg
     3661 acctgatccg cttcgactcc gttaccggcg aactcaacgt cctgattaac gaagccgaat
     3721 ggaacgcccg agaagtcgaa agcatcgact tgggcgcgaa ccaacaaggc tgcggccgcg
     3781 aacttttcgc caacttccgc agcatgacca gcagcgccga aaccggcgcg atgagcttcg
     3841 gcggcgaatt tgcctgatgc gcgtttcaga cggccttttc agaccgaagg ccgtctgaaa
     3901 aattattcaa gtgttttaag atagacgtag gtcggattct cgaatccgac acagccgtcc
     3961 aagatgtcgg tttcttgaat ccgacctaca acctgtccca tcttaataaa ataccccatc
     4021 ccacccggag aaccgaaatg tccaaactga ccccccgcga aatcctgacc gccggcgcag
     4081 ttgtaccggt aatggcgatt gacgacttga gtactgccgt cgatttgtcc cacgcccttg
     4141 tcgaaggcgg catccccacc ctcgaaatca ccctgcgcac ccctgtcggc ctcgatgcca
     4201 tccgcctgat tgccaaagaa gtgcccaacg ccatcgtcgg cgcgggtacg gttaccaacc
     4261 ctgaacagct caaagccgtc gaagacgcag gcgcggtttt cgccatcagc ccgggtttgc
     4321 acgaatccct cgccaaagcc ggccacaaca gcggcatccc cctgattccc ggtgttgcca
     4381 ccccgggcga aatccaactg gctttggaac acggcatcga caccctcaaa ctcttccctg
     4441 ccgaagtcgt tggcggcaaa gccatgctca aagccctgta cggcccttac gccgatgttc
     4501 gcttctgccc gacaggcggc atcagcctcg ccaccgcgcc cgattacttg gcactgccca
     4561 acgtcctgtg cgtcggcggc tcatggctga cgccgaaaga agccgtgaaa aacaaagact
     4621 gggacaccat cacccgtctc gccaaagaag cggcggcatt gaaacccaaa gcctgaaccg
     4681 catcgtaaaa atgccgtctg aagccctttc cagtctcaga cggcattttg ccgcttggcg
     4741 gcgcagtcgg catacacggc agcaccactc cgacatactg cccctaaaat gcccatccgc
     4801 cttccgcata ataaaaataa cgttcagttc attcgacagc agccggacag cccatactac
     4861 gcggctgaaa aaatgccgtc tgaaacgcat tcagacggca tccgcttaaa aaaacaactg
     4921 attcaaggcc gattaatccg cttccaaaac cactttcatc gcttgatttt cggcggcgtg
     4981 tttgaacacg tcgtaggctt tttccaattc gctgaatttg aaacggtggg tcaacatttt
     5041 ggtgtaatcg acggagctgc tggaaattgc cttcatcagc atttcggtgg tattggcgtt
     5101 taccaggccg gtagtgatgg caagcttttt aatccacagt ttttccagtt tgaaatcaac
     5161 ggattgaccg tgtacgccga caacggcgat atggccgccg ggtttcacaa tgtcttggca
     5221 catattccaa gttgcaggga taccgacggc ttcgatcgcg cagtccacgc cgtcttcgcc
     5281 gacgatagcg acaacttgct tgcttacatc gccggaagca gggttaatgg tatgggttgc
     5341 gcccaactct ttcgccagtt tcaaacggtt ttcgtccata tcgcaaacaa tgatggcggc
     5401 ggggctgtac agttgggcgg tcggcaaggc ggacataccg acaggagcgg cacctgcgat
     5461 gaatacggtg tcgccgggtt tgacatcgcc gtattgcacg ccgatttcgt gtgcggtcgg
     5521 caaagcgtcg ctcaacaaca gggcgacttc ttcgttgacg ttgtcgggca gcggcacgag
     5581 gctgttgtcg gcataaggcg tgcggacgta ttctgcctgc gtgccgtcaa tcatgtagcc
     5641 caaaatccag ccgccgttgc ggcaatgcga ataaagttgg attttgcagt tgtcgcaagt
     5701 acagcatttg ctgacgtatg aaataatgac tttatcgccg actttgatgt tttttacagc
     5761 ctcgccgact tcttctacaa taccgatgct ttcatgaccg agaatacgac cgtcggcgac
     5821 ttcgggtttt tttgcctttc caaataccca aatcggtacc gcaaatcgtg gttttgacga
     5881 ttttcaccac cgcatcggtc ggatcgataa tctgcggacg gggtttttct tcaaaacgga
     5941 tgtcgtttgc gccgtgataa accattgctt tcatgctgat actccttgct tgttgataaa
     6001 taatttcaat accgcaataa agtttcttta tatgagttat atgcccctac aaaaaataag
     6061 tcaataagaa ttattttcac gatgttatac aataacatac tgttttaaat ataaataaaa
     6121 ccaccgattg atattaatga acacacccat ccccttctcc gaacggctca tccgctggca
     6181 aaaacaacac ggtcgccacc acctcccttg gcaggtcaaa aacccttatt gcgtctggct
     6241 ttccgaaatc atgctccagc aaacgcaggt cgccaccgtg ttggactact atccgcgttt
     6301 cttagaaaaa ttcccgaccg ttcagacgct tgccgccgcg ccgcaagacg aagtgttgtc
     6361 gttgtgggcg ggcttgggct attacagccg cgcgcgcaac ctgcacaaag ccgcgcaaca
     6421 agtcgtcagg caattcggcg gcacgtttcc gtcggagcgc aaagacttgg aaaccctctg
     6481 cggcgtaggc agaagcaccg ccgccgccat ttgcgccttc tccttcaacc gccgcgaaac
     6541 cattttggac ggcaacgtca aacgcgtact ctgccgcgtg ttcgcccgcg acggcaatcc
     6601 gcaggacaaa aaatttgaaa actcgctctg gacacttgcc gaaagcctgc tgccgtctga
     6661 aaacgccgat atgcctgcct atacacaagg tttgatggat ttgggcgcga ccgtgtgcaa
     6721 acggacgaaa cccttgtgcc accaatgccc gatggcggac atctgcgaag cgaaaaagca
     6781 aaaccgcacc tccgagctgc cgcgcaaaaa aaccgccgcc gaagtaccga ccctgccgct
     6841 ttactggctg attatccgca accggaacgg cgcgattttg ctggaaaaac gccccgccaa
     6901 aggcatttgg ggcgggctgt attgcgtgcc gtgttttgaa agtttgaacg ggctttccga
     6961 ctttgccgcc aaattctccc tgaccatggc agatatggac gaacaaaccg ccctgaccca
     7021 ccggctgacg caccggttgc tgatgattac gccgtttgaa ggacaaatgc cgtctgaaag
     7081 cccttcagac ggcatttgga taaagccgac gcatttgaaa gattacggcc tgcccaagcc
     7141 tttggaaatt tatttaaacg gtaataggtt agaataaaca aaataaaccc attgaactgt
     7201 tgtttgcagg tatcgcagca agaacaaccg atgaatttgg gtcgtatttt aggcggcggg
     7261 ataatgttca aatgggacat ttggaacgga agaagtcggc aatttaaaaa ggatttaaaa
     7321 agcaaagaag gtcaaaaaca tgaacacaaa cttaaatgac aaagacaaag ccatggatac
     7381 cgcaatcagg tttcagaaaa ggatgaggat tccgaaattt ttctttttaa ttctctgaat
     7441 cacaatggtt ttggcattta tccaagacgt gataacgggt tctaattttc tgcaaataac
     7501 aattaatgta aaattttcgt aaaaatttat cggcttttaa aacaaaattg actaaaatag
     7561 tcgcgagttt ttactgcaat aaaggagatt gcaatgaata tgaaaacctt attagcacta
     7621 gcggttagtg cagtatgttc agttggtgtt gcgcaagcac acgagcataa tacgatacct
     7681 aaaggtgctt ctattgaagt gaaagtgcaa caacttgatc cagtaaacgg taacaaagat
     7741 gtgggtacag tgactattac tgaatctaac tatggtcttg tgtttacccc tgatttacaa
     7801 ggattaagcg aaggcttaca tggtttccac atccatgaaa acccaagctg tgagccaaaa
     7861 gaaaaagaag gtaaattgac agctggttta ggcgcaggcg gtcactggga tcctaaaggt
     7921 gcaaaacaac atggttaccc atggcaagat gatgcacact taggtgattt acctgcatta
     7981 actgtattgc atgatggcac agcaacaaat cctgttttag caccacgtct taaacattta
     8041 gatgatgttc gcggtcactc tattatgatc cacacgggtg gtgataatca ctccgatcat
     8101 ccagctccac ttggcggtgg cggcccacgt atggcatgtg gcgtgattaa ataattcgat
     8161 tgttcgaaac gaaaagtgcg gtgaattttg accgcacttt tttgctagat atttagcatt
     8221 gagacctttg caataacata ggttactaaa attttatgct taatctcatt ttcaaaatgc
     8281 aaaacttttc tgatttttcc tactttttgc tcaatattag gaaagtttta ggcaattgaa
     8341 aattttttgg cgcattttta tgcgtcaaat ttcgttaaca gactattttt gcaaaggtc
//
LOCUS       DAXHPV010000086         8249 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.086, whole genome shotgun sequence.
ACCESSION   DAXHPV010000086 DAXHPV010000000
VERSION     DAXHPV010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8249)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8249)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8249
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.086"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(147..1079)
                     /gene="cysK"
                     /locus_tag="ACFM6C_001330"
     CDS             complement(147..1079)
                     /gene="cysK"
                     /locus_tag="ACFM6C_001330"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004124 - cysteine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HFC6158783.1"
                     /translation="MKIANSITELIGNTPLVKLNRLTEGLKAEVAVKLEFFNPGSSVK
                     DRIAEAMIEGAEKAGKINKNTVIVEATSGNTGVGLAMVCAARGYKLAITMPESMSKER
                     KMLLRAFGAELILTPAAEGMAGAIAKAKSLVDAHPDTYFMPRQFDNEANPEVHRKTTA
                     EEIWRDTDGKVDVFVAGVGTGGTITGVGEVLKKYKPEVKVVAVEPEASPVLSGGEKGP
                     HPIQGIGAGFIPTVLNTKIYDSITKVPNEAAFETARAIAEKEGILVGISSGAAVWSAL
                     QLAKQPENEGKLIVVLLPSYGERYLSTPLFADLA"
     gene            complement(1273..1878)
                     /locus_tag="ACFM6C_001331"
     CDS             complement(1273..1878)
                     /locus_tag="ACFM6C_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158784.1"
                     /translation="MILLHLDFLSALLYAAVFLFLIFRAGMLQWFWASIMLWLGISVL
                     GAKLMPGIWGMTRAAPLFIPHFYLTLGSIFFFIGHWNRKTDGNGWQADPEHPLLGLFA
                     VSNVSMTLAFVGICALVHYCFSGTVQVFVFAALLKLYALKPVYWFVLQFVLMAVAYVH
                     RCGIDRQPPSTFGGSQLRLGGLTAALMQVSVLVLLLSEIGR"
     gene            complement(1875..2726)
                     /gene="dapF"
                     /locus_tag="ACFM6C_001332"
     CDS             complement(1875..2726)
                     /gene="dapF"
                     /locus_tag="ACFM6C_001332"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HFC6158785.1"
                     /translation="MNTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVG
                     FDQLLVVGRSETEGVDFRYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVET
                     ANGVIFPKLSDNGMVTVNMGKPKFMPSEIPFVPESGEGDDACIYGVHLESGIQPVSCV
                     NMGNPHAVIVVDDVECAPVRETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGV
                     GETQACGTGACAAVVAGIRLGLLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAEAVF
                     EGELAYS"
     gene            2863..3159
                     /locus_tag="ACFM6C_001333"
     CDS             2863..3159
                     /locus_tag="ACFM6C_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158786.1"
                     /translation="MFRILLLLFPCAILAACTRNIPANPAVSNCAHLQNRTILYFDAH
                     GKPADSAVKGGFYKIIEIQGANRILIQDFNSTGNALGGFYVPDCRKSSLSPKNI"
     gene            3173..3841
                     /locus_tag="ACFM6C_001334"
     CDS             3173..3841
                     /locus_tag="ACFM6C_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HFC6158787.1"
                     /translation="MNHDITFLTLFLLGFFGGTHCIGMCGGLSSAFALQLPPHINRFW
                     LILLLNTGRVSSYTAIGLILGLIGQVGVSLDQTRVLQNILYTAANLLLLFLGLYLSGI
                     SSLAAKIEKIGKPIWRNLNPILNRLLPIKSIPACLAVGILWGWLPCGLVYSASLYALG
                     SGSAATGGLYMLAFALGTLPNLLAIGIFSLQLKKIMQNRYIRLCTGLSVSLWALWKLA
                     VLWL"
     gene            complement(3914..6034)
                     /gene="pnp"
                     /locus_tag="ACFM6C_001335"
     CDS             complement(3914..6034)
                     /gene="pnp"
                     /locus_tag="ACFM6C_001335"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HFC6158788.1"
                     /translation="MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAV
                     TTNKEVKEGQDFFPLTVDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPL
                     FPEGFYHDIQIVAMVVSVDPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYVNGV
                     YVLNPTKAELAKSQLDLVVAGTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINA
                     INEFADEVNPELWDWKAPETNEELVAKVREIAGETIKEAFKIRQKQARSAKLDEAWSA
                     VKEALITEETDTLAANEIKGIFKHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGV
                     LPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVG
                     RVGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSSSMASVCGGCLS
                     LLSAGVPLKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMDFKVAGTTEGVTALQM
                     DIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGPQELSAHAPRLFTMKINQDKIR
                     EVIGKGGETIRAITAETGTEINIAEDGTITIAATTQEAGDAAKKRIEQITAEVEVGKV
                     YEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVGQVVNVKALEVD
                     DRGRVRLSIKALLDAPAREENAAE"
     gene            complement(6271..7134)
                     /locus_tag="ACFM6C_001336"
     CDS             complement(6271..7134)
                     /locus_tag="ACFM6C_001336"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HFC6158789.1"
                     /translation="MSEIGLVKIYSGKVRDLYEIDDKRMLMVASDRLSAFDVILDDPI
                     PSKGEILTQISNFWFKKLAHIMPNHFTGQTVYDVLPENEAKVLEKRAVVAKKLTPVKV
                     EAIVRGYLAGSGWKDYQKTGSVCGIRLPEGMQEAQQLPEVIFTPSTKAAVGDHDENIS
                     FEECERSIGKELAAEVRAKAIQLYTEAAEYAKSRGIIICDTKFEFGLDENGRLTLMDE
                     VLTPDSSRFWPADQYEVGTNPPSFDKQFVRDWLEQSGWNKKAPAPKVPADVIQKTVEK
                     YREALTLLTQD"
     gene            7334..8197
                     /gene="rfbD"
                     /locus_tag="ACFM6C_001337"
     CDS             7334..8197
                     /gene="rfbD"
                     /locus_tag="ACFM6C_001337"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008831 - dTDP-4-dehydrorhamnose reductase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HFC6158790.1"
                     /translation="MRILLTGSKSQLARCLRDRLPEDWETIATDSASLDITDADAVCN
                     MVKSFQPDAIVNTAAYTAVDKAEGDAAAAFAVNASAVYNLALAAHRAHARFIHISTDY
                     VFDGKGKRPYQESDFTNPSNVYGQSKTAGELLALSANPDSLILRTSWLFSEYGDNFVR
                     TMLNLARERSPLSAVHNQIGCPTYAGDLSATIIRLLQHSNPVRGIYHYAGGKSVSWYE
                     FVQHIFQAASQQQTSFPIPELTAVSDKEYPTAAPRPAYSILDCRKIENDFGIKPSDWQ
                     KALAQVVSKLL"
BASE COUNT         1986 a         2374 c         1899 g         1990 t
ORIGIN      
        1 atttccctca agcgatgcgg cgacaccaac acctgattaa aacacaaccg gcgttttcgg
       61 catatatgca aaaacgcatt tcccagcacg gcgttacacc gataccgaaa aatgcgtctg
      121 aatgtttcga caatccgatt aaagcattat gccaaatctg caaaaagtgg cgtagagaga
      181 tagcgttcgc cataagaagg cagcagcacg actatcagct tgccttcgtt ttcaggctgt
      241 ttggcaagct gcaacgcact ccaaaccgcc gcaccggaag aaatacccac caaaatgcct
      301 tctttttccg ctattgcgcg ggcggtttca aaagccgctt cgttcggcac tttggtaatg
      361 ctgtcgtaaa ttttggtatt caaaacggtc ggaataaagc ctgcgccgat gccttgaatc
      421 gggtgcgggc ctttttcgcc gccgctcaat acgggtgaag cttcaggctc gacggcaacc
      481 actttaactt cgggtttgta ttttttcaac acttcgccca cgccggtaat cgtaccgccc
      541 gtgccgacgc cggcaacgaa gacatcgact ttgccgtccg tatcccgcca aatttcctcg
      601 gcggttgttt tgcggtggac ttcggggttt gcctcattgt cgaactggcg cggcataaaa
      661 taagtgtcgg gatgcgcgtc caccaaggat ttcgctttgg caatcgcgcc cgccatacct
      721 tcggcggcag gggtcagaat cagctccgca ccaaacgcgc gcaacagcat tttgcgctcc
      781 ttactcatgc tttccggcat ggtaatcgcc agcttgtagc cgcgtgcggc acataccatt
      841 gccaaaccga cacccgtatt gccgctggtt gcttcgacaa tgacggtgtt tttgttgatt
      901 ttgcccgctt tttcggcacc ctcgatcatt gcttcggcaa tgcggtcttt gacgctgctg
      961 cctggattga aaaattccag tttcacggca acctccgcct tcaaaccttc ggtcagacgg
     1021 ttcagtttga ccaaaggcgt gttgccgatt agttcggtga tgctgtttgc aattttcatc
     1081 ttctgctcct gaataataag gtttcgacag taaggcgcaa tccccatagg catcctgtcc
     1141 gattgcaggg gatttgcgcc gaaacataaa caaatttcgg atatggcttt atcctaaacc
     1201 tatgccgcct aaaaaaccaa tatccaaaat ttctttcttt ataacttttt gttccgatac
     1261 ggccgcaccg tattatcttc caatttctga aagcagcagc accagtaccg agacctgcat
     1321 caacgctgcc gtcaacccgc cgagtcgcag ctgcgagccg ccgaacgttg acggcggctg
     1381 ccggtctata ccgcagcggt ggacataggc aaccgccatc agcacaaact gcaacacgaa
     1441 ccaataaacc ggcttcagcg cataaagttt gagcagtgcc gcaaacacaa acacttgaac
     1501 cgttcccgaa aagcaataat gcaccaacgc acatattccg acaaaagcaa gcgtcatcga
     1561 tacattactg acggcaaaca gcccgagcag aggatgttcg gggtctgcct gccatccgtt
     1621 tccatccgtt ttccggttcc aatgcccgat gaaaaaaaat atgctgccca aagtcaggta
     1681 aaaatggggg atgaacaagg gcgcggcgcg ggtcattccc catatgccgg gcatcagctt
     1741 tgcccccaaa accgatatgc ccagccacag cataatactc gcccaaaacc attgcaacat
     1801 tcctgcgcgg aatatcagaa acagaaaaac cgccgcatac agtaaggcag acaaaaaatc
     1861 caaatgcagc aaaatcatga atacgccaac tcgccttcaa acaccgcttc cgcagggccg
     1921 gtcatcatca catcgccgcc gcaggcccat tcgatatata aagtcccgcc cggcaaaatc
     1981 acctctaccg ttttcccttc atccaacaac cccagacgga tacccgccac cacagccgca
     2041 cacgcgcccg taccgcacgc ttgggtttcg cccacgccgc gctcgaacac gcgcaaacga
     2101 atcgcggttc ggctgacaat ctgcataaag ccgacgttga cgcgttcggg aaactgcctg
     2161 tgcggttcga taagcgaacc ggtttcgcgc accggcgcgc attctacgtc atcgaccaca
     2221 atcaccgcat gggggttgcc catattgacg cagctgacag gctgaatgcc ggattcgaga
     2281 tgcaccccgt aaatacaggc atcatccccc tcgcccgatt cggggacaaa cggtatttca
     2341 gacggcataa acttcggttt gcccatattg accgtaacca tgccgttatc ggacaatttc
     2401 ggaaaaataa cgccatttgc cgtttcaaca caaatttctt tcttatcggt caaacccttg
     2461 tctgcaacaa aacgggcaaa acaacgcgct ccgttgccgc attgcccgac ctcgctgccg
     2521 tcggcattga aaatacggta acggaaatcc acgccttcgg tttccgaacg cccgaccacc
     2581 aaaagctggt cgaagcccac gcctcggaag cggtccgccc atgccgcaat cggcgcgtcc
     2641 tcgggggtaa aatcctgact gaccgcgtca atcaccataa aatcgttgcc caaaccgtgc
     2701 attttagtaa atttcaaagt gttcatatta ttctgaaatc ccgtattgtc tgttgcttcc
     2761 gaattccgaa atccccgtgc cgaagggaaa tgcttccatc tcccgccgcc tgaggattaa
     2821 aatcagccat tatactgttt gttacccctt acaagaaaca ccatgttccg catattactg
     2881 ttgcttttcc cttgtgcaat ccttgccgcc tgcacccgaa acataccggc aaacccggcc
     2941 gtttcaaatt gcgcgcatct tcaaaaccgc accatcctgt atttcgacgc acacggcaaa
     3001 cccgccgaca gcgcagtaaa gggcggattt tacaaaatta tcgaaataca gggtgcaaac
     3061 cgcatcctta ttcaagactt taacagcacg ggcaatgccc tcggcggatt ctatgtgccg
     3121 gactgccgga aatcatccct ttcaccgaaa aatatctgac ttcaaactgc ctatgaacca
     3181 cgacatcact ttcctcaccc tgttcctact cggtttcttc ggcggaacgc actgcatcgg
     3241 tatgtgcggc ggattaagca gcgcgtttgc gctccaactc cccccgcata tcaaccgctt
     3301 ttggctgatc ctgctgctta acacaggacg ggtaagcagc tatacggcaa tcggcctgat
     3361 actcggatta atcggacagg tcggcgtttc actcgaccaa acccgcgtcc tgcagaatat
     3421 tttatacacg gccgccaacc tcctgctgct ctttttaggc ttatacttga gcggtatttc
     3481 ttccttggcg gcaaaaatcg agaaaatcgg caaaccgata tggcggaacc tgaacccgat
     3541 actcaaccgg ctgttaccca taaaatccat acccgcctgc cttgcggtcg gaatattatg
     3601 gggctggctg ccgtgcggac tggtttacag cgcgtcgctt tacgcgctgg gaagcggtag
     3661 tgcggcaacg ggcgggttat atatgcttgc ctttgcactg ggtacgctgc ccaatctttt
     3721 agcaatcggc attttttccc tgcaactgaa aaaaatcatg caaaaccgat atatccgcct
     3781 gtgtacggga ttatccgtat cattatgggc attatggaaa cttgccgtcc tgtggctgta
     3841 agccccattc attcccgata cccgtaaaaa ataccgtctg aaacctgttc agacggcact
     3901 ttcaccctaa gcgttactcg gcggcatttt cctcacgggc aggcgcgtcc agcagggctt
     3961 tgatggacag acggacacgg cctctgtcgt ccacttccaa tgctttcacg ttcaccacct
     4021 gaccgacttg caggtagtcg ccgacattgc gtacgcgctc gtgggcgatt tggctgatgt
     4081 gtaccaaacc gtctttgccc ggcatcacac tgacaatcgc gccgacattg ttgtcgagga
     4141 ttttcaccac agtgccttcg tacactttgc ccacttccac ttcggcagta atctgctcga
     4201 tgcgtttttt cgccgcatcg ccggcttctt gagtggttgc ggcaatggta atcgtaccgt
     4261 cttcggcaat attgatttcc gtaccggttt cagcggtaat cgcacggatg gtttcaccgc
     4321 ccttaccgat aacttcgcgg attttgtctt ggttgatttt catcgtgaac aagcgtggcg
     4381 cgtgtgcgga cagctcttgc gggcccgcaa cggcggcttt catctgatcc aagatgtgca
     4441 gacgcgcttc tttggcctgt gccaaagcga tttgcatgat ttctttggta ataccttgga
     4501 ttttgatgtc catttgcagc gcggttacac cttcggtcgt accggctact ttaaagtcca
     4561 tatcgcccaa gtggtcttcg tcgcccaaga tgtcggtcag gacggcaaat ttgttgcctt
     4621 ccagaatcag acccatagcg ataccggcaa cgtgtgcttt caaaggcacg ccggcggaca
     4681 gcaggctcag gcagccgccg cagacggaag ccatagagga agagccgttg gattcggtaa
     4741 tttcggagac cacgcgcatg gtgtagctga aatcttcagg tttcggcaat acggccaaca
     4801 atgcacgttt agccaaacgg ccgtgaccga tttcacgacg ttttggcgca cctacgcgac
     4861 ccacttcgcc ggtagagtat ggaggaaagt tgtagtgcag catgaagcgg tcggtgtatt
     4921 caccggacag cgcatcaatg atttgctcgt cgcgtgaagt acccaaagtt gcaaccgcca
     4981 aagcttgagt ttcgccacgg gtaaacaatg cagaaccgtg cgtgcgcggc aatacgccgg
     5041 tttgaatgtt cagcggacga acagtgcggg tgtcgcgacc atcaatacgc ggttggccgt
     5101 ctaaaatttg gctgcggaca acatcggctt ccaagtgttt gaaaatgcct ttgatttcgt
     5161 tggctgccaa agtgtcggtt tcctcggtaa tcaaggcttc ttttacagca ctccaagctt
     5221 cgtccaattt ggcagaacgc gcttgttttt gacggatttt gaatgcttct ttaatggttt
     5281 caccggcaat ttcgcgtact tttgcaacca attcttcatt ggtttcaggt gctttccaat
     5341 cccaaagttc cggattgact tcgtcggcaa attcattgat tgcattgatg gcaacctgca
     5401 tttgatcgtg gccgtaaacc accgcgccca gcatcacgtc ttcgggcagg attttggctt
     5461 cggattccac catcaacacg gcttttgaag taccggcgac caccaagtcc aattgcgatt
     5521 tcgccaattc ggctttagtc gggttcaaaa cgtacacgcc gtttacataa ccgacgcgtg
     5581 ccgcgccgat cgggccggca aacggtacgc cgctcaacac cagcgcggca gatgcaccca
     5641 acattgcagg aatatcagaa tcgatttcag gatcgacgga cacgaccatc gctacgattt
     5701 ggatgtcgtg gtagaaacct tcagggaaca gcggacgaat cggacggtcg atcagacggc
     5761 tggtcaggat ttctttttcg ctttgtttgc cttcgcgttt gaagaaaccg ccgggaattt
     5821 tgcctgcggc gtaagtgcgc tcgaggtaat cgacagtcag agggaagaag tcttggcctt
     5881 ctttcacttc tttgttggtg gtaacggcaa ccaaaaccac ggtgtcgccc atagagactt
     5941 taacggcagc ggcggcttgg cgggcaattt cgccggtttc caaagtaacg gtgtggttgc
     6001 cgtattggaa agttttaacg tgtttgtcga acattattgt tcctttcaaa ataccgcact
     6061 gctaaaacac taataatgca cactaaaatc cgaatgtgca tagttagggt ttcagaccgt
     6121 gcggcaggtt gtaaacaagc tttcagacga catttcggac gctgaaagca attgcggatt
     6181 ataaaggcaa ccatccttaa aatccagtat tgatacaata aaaaggtcgt ctgaaccata
     6241 tttctttcag acggccttca aacttaaaaa tcaatcctga gtcagcaaag tcaatgcttc
     6301 ccgatacttc tcgacagttt tctgaatcac atcggcaggc actttcggcg caggggcttt
     6361 tttgttccaa ccgctttgtt ccagccagtc gcggacgaat tgtttgtcaa aagacggcgg
     6421 attggtgccg acttcatatt gatccgccgg ccagaagcgg ctcgaatcgg gagtcaatac
     6481 ctcatccatc agcgtcagcc taccgttctc atccaaaccg aattcaaatt tggtatcgca
     6541 aatgatgatg ccgcgcgatt tagcatattc cgccgcttct gtataaagct gaatcgcttt
     6601 ggcgcgcact tccgccgcca attcttttcc gatactgcgt tcgcattctt caaagctgat
     6661 gttttcatcg tgatcgccga ctgcggcttt ggttgagggc gtaaaaatca cttcaggcag
     6721 ttgttgcgct tcctgcatac cttcgggcag ccgaataccg caaaccgagc cggttttttg
     6781 ataatctttc caaccgctgc ctgccagata accgcgcaca atcgcctcta ctttcaccgg
     6841 agtgagcttt ttagccacga cggcgcgttt ttctaaaact ttggcttcgt tttcaggcaa
     6901 aacatcgtaa accgtttgac cggtaaagtg gttgggcata atatgcgcca gttttttaaa
     6961 ccaaaaattg gaaatctgcg tcagaatctc ccctttgctc ggaatcgggt cgtccaaaat
     7021 cacatcaaac gcggacaggc ggtcggaagc gaccatcagc atacgtttat cgtcgatttc
     7081 atataaatcg cgcacttttc cagaatagat ctttaccaaa ccaatctcac tcatttcgcc
     7141 cccccctgaa aatatcttga aaataccgac ccgacacccg acaggtttga atcgcaaacc
     7201 gatattctag ccgaagtcgg cgcaaaacaa tacccatggc acaaaaagcc aacccgtcaa
     7261 ccgtcggcaa agttttggca ctataatacc gacagcaagt cctacaatac acttttacca
     7321 aaggaaatac ctcatgagaa tcctattgac aggctcgaaa agccaactgg cacgctgcct
     7381 gcgcgaccgt cttccggaag actgggaaac cattgcgacg gattccgcat ccctagacat
     7441 taccgatgcc gatgccgtct gcaacatggt caaaagtttc caacccgacg ccattgtcaa
     7501 cacggctgcc tatactgccg tcgacaaagc ggaaggcgat gcggcagcgg catttgccgt
     7561 caatgcttcc gccgtttaca accttgcctt ggcagcacat cgcgcccatg cccgattcat
     7621 ccacatctca accgactatg tatttgacgg taaagggaaa agaccctatc aggaaagcga
     7681 ctttaccaat ccttccaatg tatacggaca atccaaaacc gcaggcgagc tgctcgcact
     7741 gtctgccaat cccgacagcc ttatcctgcg gacttcttgg ctgtttagcg aatacgggga
     7801 caactttgtc cgcacgatgc tgaaccttgc gcgggaacgt tccccgctgt ccgccgtcca
     7861 caaccaaatc ggctgcccga cctatgccgg cgacttgtcc gccaccatca tccgcctgtt
     7921 gcagcactcc aatcccgttc gcggcattta ccactacgcc ggcggcaaat ccgtatcttg
     7981 gtacgaattt gtccaacata ttttccaagc ggcatcgcaa cagcagacat ccttccccat
     8041 tcccgaattg actgccgttt cagacaagga atatccgacc gccgccccca ggcccgcata
     8101 cagcattttg gactgccgca aaatcgaaaa cgacttcggc atcaaaccgt cagactggca
     8161 aaaagccctt gcgcaggtcg tttccaagct gctctgatgc cgcccgcctc tccgtttccg
     8221 ccgtcaagca ccgccttggc ggttttctt
//
LOCUS       DAXHPV010000087         8147 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.087, whole genome shotgun sequence.
ACCESSION   DAXHPV010000087 DAXHPV010000000
VERSION     DAXHPV010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8147)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8147)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8147
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.087"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            111..1052
                     /gene="miaA"
                     /locus_tag="ACFM6C_001338"
     CDS             111..1052
                     /gene="miaA"
                     /locus_tag="ACFM6C_001338"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HFC6158791.1"
                     /translation="MPTPKAFALLGPTAGGKTALALKIAETLPVEIISLDSALVYRDM
                     DIGTAKPSASERAFVPHHLIDIIPPTESYSAARFVEDCTRLVGEISSRGRFALIVGGT
                     MMYFRALTQGLNDLPEANACLRADLDEQKQMYGLDFLYRTLQKVDPETACRLKPNDSQ
                     RIERALEVYHLTGKPMSEHLGRQSPHTLPFDLHTAALIPENRARLHENIALRFHLMLE
                     QGFIGEVENLRRLYPSLTADSPAIRCVGYRQAWEHLDGATDRQTFIEKGIAATRQLAK
                     RQLTWLRKTPLDCVADPFSDGTSCTRLIEAAKRFFGA"
     gene            1056..1775
                     /gene="tadA"
                     /locus_tag="ACFM6C_001339"
     CDS             1056..1775
                     /gene="tadA"
                     /locus_tag="ACFM6C_001339"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008251 - tRNA-specific adenosine
                     deaminase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0002100 - tRNA wobble adenosine to inosine
                     editing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HFC6158792.1"
                     /translation="MLTTPPLAPKTVAALHRLGIRTLEELRQNGSVKAFLLLKASGLT
                     LTKSTLWQLESLLDGTPPQEMSQAHKARLLAELKNHPPVAAFPQQGEMEHFMREALRQ
                     AEQSAADGEIPVGAVIVSDGKIIAAAHNTCIADCNVSRHAEINALAQASSEMQNYRLD
                     GCDIYITLEPCAMCASALIQARIRRVIYGAAEPKTGAAGSIVNLFADKRLNTHTAIRG
                     GILQEECRAVLSRFFQNKRKG"
     gene            1780..2268
                     /locus_tag="ACFM6C_001340"
     CDS             1780..2268
                     /locus_tag="ACFM6C_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF456 domain-containing protein"
                     /protein_id="HFC6158793.1"
                     /translation="MTALLVILALALIAVGTAGIVYPALPGLALMFAGTWLLAYSGGY
                     QIYGAGVLWTVGLISLAGILADYVAGIWGTKYTGAGKLAVRGALAGSIIGMFFSLPGL
                     ILGPFIGAAAGELIDRRNMLQAGKAGLGTLLGLVVGTAFKIGCAVSILFILLVKYIAY
                     LF"
     gene            2334..3086
                     /gene="rlmB"
                     /locus_tag="ACFM6C_001341"
     CDS             2334..3086
                     /gene="rlmB"
                     /locus_tag="ACFM6C_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HFC6158794.1"
                     /translation="MANQRPIYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEK
                     AANENIRVYFADADRLNAISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILD
                     GITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVASGAAETVPYITVTNLAR
                     TLRELKEYGIWIIGTDMGGNADLYHCDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIP
                     MFGTVESMNVSVSAGMVLSETRRQRVLKNEKA"
     gene            complement(3148..4539)
                     /locus_tag="ACFM6C_001342"
     CDS             complement(3148..4539)
                     /locus_tag="ACFM6C_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleobase:cation symporter-2 family protein"
                     /protein_id="HFC6158795.1"
                     /translation="MSGHMGKGADAPDLVYGLEDRPPFGNALLSAVTHLLAIFVPMIT
                     PALIVGGALELPVEMTAYLVSMAMVASGVGTYLQVNRFGPVGSGMLSIQSVNFSFVTV
                     MIALGAGMKEGGLTKDAMISTLLGVSFVGAFLVCFSAWLLPYLKKVITPTVSGVVVML
                     IGLSLVHVGITDFGGGFGAKADGTFGSMENLGLASLVLLIVLVFNCMKNPLLRMSGIA
                     VGLIAGYIVALFLGKVDFSALQNLPLVTLPVPFKYGFAFDWHAFIVAGAIFLLSVFEA
                     VGDLTATVMVSDQPIEGEEYTKRLRGGVLADGLVSVIATALGSLPLTTFAQNNGVIQM
                     TGVASRHVGKYIAVILVLLGLFPVVGRAFTTIPSPVLGGAMVLMFGLIAIAGVRILVS
                     HGIRRREAVIAATSVGLGLGVAFEPEVFKNLPVLFQNSISAGGITAVLLNLVLPEDKT
                     EAAVKFDTDHLEH"
     gene            complement(4554..4808)
                     /locus_tag="ACFM6C_001343"
                     /pseudo
     CDS             complement(4554..4808)
                     /locus_tag="ACFM6C_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271940.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            4846..5721
                     /gene="dapA"
                     /locus_tag="ACFM6C_001344"
     CDS             4846..5721
                     /gene="dapA"
                     /locus_tag="ACFM6C_001344"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HFC6158796.1"
                     /translation="MLQGSLVALITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVGT
                     TGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLS
                     VVPYYNKPSQEGMYRHFKAVAEAAAIPMILYNVPGRTVVSMNNETILRLAEIPNIVGV
                     KEASGNIGSNIELINRAPEGFVVLSGDDHTALPFMLCGGHGVITVAANAAPKLFADMC
                     RAALQGDIALARELNDRLIPIYDTMFCEPSPAAPKWAVSALGRCEPHVRLPLVPLTEG
                     GQAKVRAALKASGQL"
     gene            5730..6926
                     /gene="bamC"
                     /locus_tag="ACFM6C_001345"
     CDS             5730..6926
                     /gene="bamC"
                     /locus_tag="ACFM6C_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamC"
                     /protein_id="HFC6158797.1"
                     /translation="MPSEPFGRHNATNTLISITQDDTMTHIKPVIAALALIGLAACSG
                     SKTEQPKLDYQSRSHRLIKLEVPPDLNNPDQGNLYRLPAGSGAVRASDLEKRRTPAVQ
                     QPADAEVLKSVKGVRLERDGSQRWLVVDGKSHAEIWPLLKAFWQENGFDIKSEEPAIG
                     QMETEWAENRAKIPQDSLRRLFDTVGLGGIYSTGERDKFIVRIEQGKNGVSDIFFAHK
                     AMKEVYGGKDKDTTVWQPSPSDPNLEAAFLTRFMQYLGVDGQQAENASAKKPTLPAAN
                     EMARIEGKSLIVFGDYGRNWRRTALALDRIGLTVVGQNTERHAFLVQKAPNESNAVTE
                     QKPGLFKRLLGKGKAEKPAEQPELIVYAEPVANGSRIVLLNKDGSAYAGKDASALLGK
                     LHSELR"
     gene            complement(6983..7915)
                     /gene="pip"
                     /locus_tag="ACFM6C_001346"
     CDS             complement(6983..7915)
                     /gene="pip"
                     /locus_tag="ACFM6C_001346"
                     /EC_number="3.4.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0030163 - protein catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl aminopeptidase"
                     /protein_id="HFC6158798.1"
                     /translation="MYEIKQPFHSGYLQVSEIHQIYWEESGNPDGVPVIFLHGGPGAG
                     ASPECRGFFNPDVFRIVIIDQRGCGRSRPYACAEDNTTWDLVADIEKVREMLGIGKWL
                     VFGGSWGSTLSLAYAQTHPERVKGLVLRGIFLCRPSETVWLNEAGGVSRIYPEQWQKF
                     VAPIAENRRNRLIEAYHGLLFHQDEEVCLSAAKAWADWESYLIRFEPEEVDEDAYASL
                     AIARLENHYFVNGGWLQGDRAILNNIGKIQHIPTIIVQGRYDLCTPMQSAWALSKAFP
                     EAELRVVQAGHRAFDPPLADALVQAVEDIFPRLL"
BASE COUNT         2091 a         2686 c         1911 g         1459 t
ORIGIN      
        1 aaaggcatac ggtaaacacg cccccttgcc gtcggcgtgc ttccgcaaac caaaatataa
       61 cgtcggcacg ctttccgcta taatccgtat ttttccaaac ctgaaacgtt atgccgaccc
      121 cgaaagcctt tgccctgctc gggccgaccg ccggaggcaa aaccgcgctc gccctcaaaa
      181 ttgccgaaac cctgcctgtc gaaatcatca gcctcgattc cgcgctggtt taccgcgata
      241 tggacatcgg cacggcgaaa ccgtccgcct ccgaacgcgc ctttgtcccg caccacctta
      301 tcgacatcat cccgcctacc gaatcataca gcgccgcccg ctttgtcgaa gactgcacgc
      361 gcttggtcgg ggaaatttcc tcacgcggca ggtttgccct tattgtcggc ggcacgatga
      421 tgtatttccg cgccctgacc caaggtttga acgatttgcc cgaagccaac gcctgcctgc
      481 gtgccgactt ggacgaacaa aaacagatgt acggcttgga tttcctctac cgcaccctgc
      541 aaaaagtcga ccctgaaacc gcatgccgtc tgaaaccgaa cgacagccag cgtatcgaac
      601 gcgctttgga agtttatcat ctgaccggca aaccgatgag cgaacacctc ggcagacaaa
      661 gcccccatac gctccccttc gatttgcata ccgccgccct gattcccgaa aaccgcgccc
      721 gcctgcatga aaatatcgcc ctgcgtttcc acctgatgct tgaacagggc tttatcggcg
      781 aagtagaaaa cctgcgccgc ctctatccca gcctgaccgc cgactcccct gccatacgct
      841 gcgtcggcta ccgtcaggcg tgggaacacc tcgacggcgc aaccgacaga caaaccttca
      901 tcgaaaaagg cattgccgcc acgcgccaac ttgccaaacg ccaactgact tggttgcgca
      961 aaacaccttt agactgcgtt gccgacccgt tttcagacgg cacttcatgc acacgcctga
     1021 ttgaggcggc aaaacggttt ttcggcgcat aaaccatgct gaccacaccg ccgctcgccc
     1081 ccaaaaccgt cgccgccctg cacaggctcg gtatccgtac gctcgaagaa ctgcggcaaa
     1141 acggttcggt caaagccttt ctgctgctca aagcatcggg tttgaccctc acgaaaagca
     1201 cgctgtggca actcgagtcg ctgctggacg gcacgccgcc gcaagaaatg tcccaagcgc
     1261 ataaagctcg cctgcttgcc gaattgaaaa accatccgcc cgtcgccgcc tttccgcagc
     1321 aaggcgaaat ggaacacttc atgcgcgaag cactgcgcca agcagaacaa tccgccgccg
     1381 acggcgaaat acccgtcggg gcagtcatcg tttcagacgg caaaatcatc gcggcggcac
     1441 acaacacctg cattgccgac tgcaatgtca gccgacacgc cgaaatcaac gccttggcac
     1501 aggcaagcag cgaaatgcaa aactaccgcc ttgacggatg cgatatctac atcaccctcg
     1561 aaccctgcgc catgtgcgcg tccgcactga tacaggcacg aatcaggcgc gtgatatacg
     1621 gtgcggcaga acccaaaacc ggcgcggcag gcagcatcgt caacctgttt gccgacaaac
     1681 gcctcaatac gcacaccgcc atacggggcg gaatcctgca agaagaatgc cgcgccgtat
     1741 taagccgttt ttttcagaac aaaagaaaag gttgaatcca tgaccgccct actcgtcatc
     1801 ctcgccctcg ccctgatagc cgtcggtacg gcgggcatcg tttaccccgc cctgcccgga
     1861 ttggcattga tgtttgccgg aacatggctg cttgcctact ccggcggcta ccaaatctac
     1921 ggcgcgggcg ttttgtggac ggtcggactc atcagccttg ccggcatact ggcggactat
     1981 gtggcaggca tatgggggac aaaatatacc ggagcgggca agctcgccgt tcgcggcgca
     2041 ttggccggca gcatcatcgg tatgtttttc tcccttcccg gactaatact cggccccttt
     2101 atcggcgcgg cggcaggcga actgatcgat cggcgcaata tgcttcaggc aggtaaagcg
     2161 ggcttgggta cgctgttggg gcttgtcgtc ggtacggcat tcaaaatcgg ctgcgccgta
     2221 tccatcttgt ttatcctgtt ggtgaaatac atcgcatacc tgttttaacc ccttcagacg
     2281 gcatcaggat aaattgctat aatgccgtct gaaatttccg acaaagcacc atcatggcaa
     2341 accaaagacc tatctacggc ttccacgccg tcaacgcccg attgtggcaa aaccccaaat
     2401 ccatcgtcga actctacatc caagaaggca aatcagacgc acgcacgcgc gaagtgttgg
     2461 aaaaggcggc aaacgaaaac atccgcgtat attttgccga tgccgaccgc ctcaacgcca
     2521 tcagcaaagg cgcgcgccat cagggtgtgg tcggatttat cgatgcctcc aaaaaccacg
     2581 tccacctcga agacgtattg gaaaacctca gcgaaccgcc gctgttgctg atactcgacg
     2641 gcatcaccga tccgcacaac ctcggcgcgt gcctgcgtac cgccgacgca atgggcgtac
     2701 acgccgtcat cgcaccgaaa gacaaaagcg cggggctgaa cgccaccgtc agcaaagtcg
     2761 ccagcggcgc ggcggaaacc gtcccctaca tcaccgtaac caacctcgcc cgcaccctgc
     2821 gcgagctgaa agaatacggc atttggatca tcggcaccga tatgggcggc aacgccgacc
     2881 tttaccattg cgatctgccc gacagcgcgg catgggtgat gggcaacgaa ggcgacggta
     2941 tgcgccgcct gacacgcgaa cattgcgaca tgctggtgtc catacccatg ttcggcacgg
     3001 tcgaaagcat gaacgtctcc gtgtctgccg gaatggtatt aagcgaaacc cgccggcagc
     3061 gcgtattaaa aaacgaaaaa gcgtaagcct caaaaacaat gccgtctgaa acagggattc
     3121 tgtttcagac ggcattcgtt ttcaaaatca gtgttccaag tggtcggtat caaacttgac
     3181 cgccgcctca gttttatctt cgggcaagac caaattcagc aagactgccg taatgccgcc
     3241 ggcggaaata gagttttgga acaagacggg caggttttta aacacttccg gctcaaacgc
     3301 gacacccaag cccaaaccga ccgacgttgc tgcaattacc gcttcgcgcc tgcggatgcc
     3361 gtggctgacc aaaatccgca cgcccgcaat cgcaatcaag ccgaacatca aaaccatcgc
     3421 gccgcccaac accggactcg gaatcgtcgt aaacgcgcga ccgacaacgg ggaacagacc
     3481 caacagcacc aaaatcacgg caatatattt gcccacatga cgcgaagcca cgccggtcat
     3541 ctgaatcacg ccgttgtttt gcgcaaacgt cgtcagcggc agcgaaccca aagccgtcgc
     3601 aatcaccgac accaagccgt cagccaacac gccgccgcgc aaacgtttgg tgtattcctc
     3661 gccttcaatc ggctggtcgg acaccattac cgttgcggtc aaatcgccga ccgcctcaaa
     3721 cacgctcaac aggaaaatcg cacccgccac aataaatgcg tgccagtcaa aagcaaaacc
     3781 atatttaaac ggtacgggca gcgtaaccag cggcaggttt tgcagtgccg aaaaatccac
     3841 cttgcccaaa aacagcgcga cgatatagcc ggcaatcaga ccgaccgcaa tgccgctcat
     3901 ccgcagcagc gggtttttca tgcagttgaa caccagcaca atcagcagca ccagcgatgc
     3961 cagccccaag ttttccatcg agccgaacgt gccgtccgcc tttgcgccga agccgccgcc
     4021 gaaatcggta ataccgacgt gtaccaaact caagccgatc agcatcacca ccacaccgct
     4081 gaccgtcggc gtaatcactt ttttcaaata cggcagaagc cacgccgaga aacacaccaa
     4141 aaacgcgccg acaaacgata cgcccaagag cgtcgaaatc atcgcatcct tagtcaaacc
     4201 gccctctttc atccccgcgc ccagcgcaat catgacggta acgaacgaga aattcaccga
     4261 ctggatggac agcatccccg aaccgaccgg cccgaagcgg ttgacctgca aataagtgcc
     4321 gacacccgac gcaaccatcg ccatcgacac gagatacgcc gtcatctcca ccggcagttc
     4381 cagcgcgccg cccacaatca gcgcgggcgt aatcatcggc acgaaaatcg ccaaaagatg
     4441 ggtaaccgcg ctcaacagcg cattaccgaa cggcggccta tcctccaaac cgtacaccaa
     4501 atcaggcgca tccgcccctt ttcccatatg accgctcata atgtttcctt gcttcaaatg
     4561 ttgaaaaaac caaagcgcgg attgtagcga atccgccata ccgcttcaat ttcgatttcg
     4621 gacggcatac gcgcccgtcc ggcaaacaga ttccgaaccg tcgccgccgg aatatcgttt
     4681 acaaaacgca ataacctgat ttcaaacaca aaaatacaaa cccgacgcat ccgccgtcaa
     4741 gccgccccgc tcatcccgga cccgccggat ttcacacctg cggtaaagta ggctacaatc
     4801 ggaagcatta ccgcccccta caccacaact gataaaaggt tctgtatgtt acaaggtagc
     4861 ctggttgccc tgattacccc gatgaatcaa gacggcagca tccattacga acaactccgc
     4921 gacttaatcg actggcacat tgaaaacggc acggacggca tcgtcgccgt cggcacgaca
     4981 ggcgaatccg ccaccctctc cgtcgaagaa cacaccgccg tcatcgaagc cgtcgtcaaa
     5041 cacgttgcca aacgcgtccc cgtcatcgcc ggcacagggg caaacaacac cgtcgaagcc
     5101 atcgcccttt cccaagccgc cgaaaaagcc ggggcggact acaccctctc cgtcgtcccc
     5161 tattacaaca aaccttcgca agaaggcatg taccgccatt tcaaagccgt tgccgaagcc
     5221 gccgcgattc cgatgatact ctacaacgtt cccggcagaa ccgtcgtcag catgaacaac
     5281 gaaaccatcc tgcgccttgc cgaaatcccc aacatcgtcg gcgtgaaaga agccagcggc
     5341 aacatcggca gcaacatcga actcatcaac cgcgcgcccg aaggcttcgt cgtcctgtcc
     5401 ggcgacgacc acaccgccct accgttcatg ctctgcggcg gacacggcgt gattaccgta
     5461 gccgccaacg ccgcgcccaa gctctttgcc gatatgtgcc gcgccgcgct tcaaggcgat
     5521 atcgcccttg cacgcgaact caacgaccgg ctgattccga tttacgacac catgttctgc
     5581 gaacccagcc ccgccgcacc gaaatgggcg gtatccgccc tgggcagatg cgaaccgcac
     5641 gtccgcctgc cgctcgttcc gctgacggaa ggcggacagg caaaagtccg cgccgccctg
     5701 aaagcctcag gacaacttta aatatagcca tgccgtccga accgttcgga cggcataacg
     5761 caacaaacac tttaatatcc atcacacagg atgacacgat gacccatatc aaacccgtca
     5821 ttgccgcgct cgcactcatc gggcttgccg cctgctccgg cagcaaaacc gaacagccca
     5881 agctcgacta ccaaagccgg tcgcaccgcc tgatcaaact cgaagtccca cctgatttga
     5941 acaaccccga ccaaggcaac ctctaccgcc tgcctgccgg ttcgggcgcc gtccgcgcca
     6001 gcgatttgga aaaacgccgc acacccgccg tccaacagcc tgccgatgcc gaagtattga
     6061 aaagcgtcaa aggtgtccgc ctcgagcgcg acggcagcca acgctggctc gttgtcgacg
     6121 gcaagtctca tgccgaaatc tggccgctcc tgaaagcctt ttggcaggaa aacggcttcg
     6181 acatcaaatc cgaagaaccc gccatcggac aaatggaaac cgagtgggcg gaaaaccgtg
     6241 ccaaaatccc ccaagacagc ttgcgccgcc tattcgacac agtcggtttg ggcggcatct
     6301 actccaccgg cgagcgcgac aaattcatcg tccgtatcga acagggcaaa aacggcgttt
     6361 ccgacatctt cttcgcccac aaagccatga aagaagtgta cggcggcaaa gacaaagaca
     6421 cgaccgtatg gcagccctcc ccgtccgatc ccaacctcga agccgctttc ctgacgcgct
     6481 ttatgcaata tttgggcgtt gacggacagc aggcggaaaa cgcatcggca aaaaaaccta
     6541 cccttcccgc cgccaacgaa atggcgcgta tcgaaggcaa aagcctgatt gtctttggcg
     6601 actacggcag aaactggcgg cgcaccgcgc tcgccctcga ccgcatcggg ctgaccgtcg
     6661 tcggtcaaaa caccgaacgc cacgctttcc tggttcaaaa agccccgaac gaaagcaatg
     6721 cagttaccga acaaaaaccc ggcctgttca aacgcctgct gggcaaaggc aaagcggaga
     6781 aacctgccga acagccggaa ctgattgtct atgccgagcc tgtcgccaac ggctcgcgca
     6841 tcgtcctgct caacaaagac ggcagcgcat atgccggcaa agacgcatcc gcattattgg
     6901 gcaaactcca ttccgaactg cgttaaaccg ttcaaaacaa aagcagcttc caaacagaag
     6961 ctgctttttt gtgcggaact ttttacaaca accgaggaaa aatatcctca accgcctgaa
     7021 ccaacgcatc cgccaaaggc ggatcgaacg cacgatgccc tgcctgaacc accctcaatt
     7081 ccgcttcggg aaaggctttc gacagcgccc acgcactctg catcggcgta cacaaatcat
     7141 accgcccctg cacgataatg gtcgggatat gctgtatttt gccgatattg ttcaaaatcg
     7201 ccctatcgcc ctgcaaccag ccgccgttga caaaataatg gttttccaaa cgcgcgattg
     7261 ccagcgaggc ataagcatct tcatccactt cctccggctc gaaacggatc agatagcttt
     7321 cccaatccgc ccaagccttt gcggcagaca ggcacacttc ttcatcttga tgaaacagca
     7381 acccgtgata cgcctcaatc agccggttcc gccgattttc agcaatcggc gcgacaaatt
     7441 tttgccattg ttccggataa atccggctca caccgcccgc ctcgttcagc cacaccgttt
     7501 cagacggtct gcacaaaaat atcccgcgca acaccaatcc ctttacccgt tcaggatggg
     7561 tttgggcata agccagcgac aaagtgctgc cccacgaacc gccgaacacc agccatttcc
     7621 cgatacccag catttcacgg actttttcaa tatccgccac caaatcccaa gtcgtattgt
     7681 cttccgcaca agcatacggg cgcgaacgtc cgcaaccgcg ctggtcgatg atgacgatgc
     7741 ggaacacatc gggattgaaa aaaccccgac attcaggcga agcccccgcg cccggcccgc
     7801 catgtaaaaa aatgaccggc acaccgtcgg gattacccga ctcttcccaa taaatttgat
     7861 gaatttcaga cacctgcaag tatccgctat gaaaaggctg ttttatttca tacatcatct
     7921 tctcccatat tgcttctgac aatccgaaca tcccgacaca cgacatcccg cacgaaacac
     7981 aagccgcccc gaaaggcaaa tgccgaaaaa tcgcgatata gtgaattaac aaaaatcagg
     8041 acaaggcggc gagccgcaga cagtacggat agtacggaac cgattcactc gtgcttaagc
     8101 accttagaga atcattctct ttgagctaag gcgaggcaac gccgtac
//
LOCUS       DAXHPV010000088         8071 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.088, whole genome shotgun sequence.
ACCESSION   DAXHPV010000088 DAXHPV010000000
VERSION     DAXHPV010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8071)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8071)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8071
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.088"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            96..404
                     /locus_tag="ACFM6C_001347"
     CDS             96..404
                     /locus_tag="ACFM6C_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158799.1"
                     /translation="MTLKTDLLPKINNEDYQRLILKHSAEFSGGEIRLLNEILEKFNF
                     DVVQAQALAQAVMQQVRFDPNAYHIDSDDEDTTGICPHCINPPMPPLRDYLVWRETRG
                     "
     gene            486..1517
                     /gene="ruvB"
                     /locus_tag="ACFM6C_001348"
     CDS             486..1517
                     /gene="ruvB"
                     /locus_tag="ACFM6C_001348"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HFC6158800.1"
                     /translation="MLQTDNLTAAQPQRIVAAQTASAQEELLERALRPKTLDDYIGQD
                     KAKEQLAIFIQAAKKRGEALDHTLLFGPPGLGKTTLAHIIAKELGVNLRQTSGPVLER
                     AGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDYRLDIMIGEGPAARSVKID
                     LPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLTTIVSRSAQLLQLDMSEEGA
                     EEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSMLDVDAQGLDVMDRK
                     FLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQRTPRGRMATERAY
                     LHFGLPVEK"
     gene            complement(1584..2267)
                     /gene="rpe"
                     /locus_tag="ACFM6C_001349"
     CDS             complement(1584..2267)
                     /gene="rpe"
                     /locus_tag="ACFM6C_001349"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HFC6158801.1"
                     /translation="MTAYRIAPSILSADFARLGEEVESVIAAGADLIHFDVMDNHYVP
                     NLTFGPMVCAALKPYASVPIDVHLMVEPVDDLIQSFAKAGASIITFHPEASRHIDRSL
                     SLIRDMGCQAGLVLNPATPVYLLENVLDRLDMVLLMSVNPGFGGQSFIPQTLEKIRQV
                     RAMLDCYEEKSGRRIAIEVDGGIKTDNIAAAAQAGADTFVAGSAIFGKPDYKAVIDAM
                     RVELAKAAG"
     gene            2413..2847
                     /locus_tag="ACFM6C_001350"
     CDS             2413..2847
                     /locus_tag="ACFM6C_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HFC6158802.1"
                     /translation="MPLPAPCRFAKPAASFLSMALLSCQLSHAATAYIPPNDFQPNCD
                     IRRLGLTQSQHNELRKIRTAFKMAGDRARLKVMHSEHSRRRSVVEIISSDVFNRNEAR
                     DYVESRYLSGMDFAVDELEIQHRFFHILTPQQQQMWLSSCLK"
     gene            complement(2860..3723)
                     /locus_tag="ACFM6C_001351"
     CDS             complement(2860..3723)
                     /locus_tag="ACFM6C_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFC6158803.1"
                     /translation="MELNEFLDKAYAVLRRLDAVLPPEPGHTDWNALAFRWQSAGKKG
                     FLEHLPDPHTFPLVRLAGVGRQTELLVRNTEQFIVGRPANNVLMSGARGTGKSSLVKA
                     LLHEYADKGLRLIEVDKSDLIGLPYLLTLLKERPEKFIVFCDDLSFESGDETYKALKT
                     ALDGGLSQRCANVLVYATSNRRHLMPEYFDENAGTTGMRGEIHQKEAVEEKISLSDRF
                     GLWLSFYPFDQNDYLAAVQNWLEDFGVPYDETAQMAALQWAQTRGSRSGRSAWQFACD
                     WAGRLPKQRAL"
     gene            complement(3731..4348)
                     /locus_tag="ACFM6C_001352"
     CDS             complement(3731..4348)
                     /locus_tag="ACFM6C_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HFC6158804.1"
                     /translation="MFTGIVQGLGKLTAIHRPSEAFQTYVVELPQEAADNLQRGASVA
                     NNGCCLTITEIEGNRVSFDLMAETLAKTNLGLLKEGDCVNIERAARFGDEIGGHVMSG
                     HIMATVPIVEIERDGYNRTVWFSLPHELKPYILTKGFVGLDGCSLTIGKVEDSRFNVH
                     LIPETLERTLFGSRKVGDRINIEIDPNTQAIVDTVERLMAQRYAK"
     gene            complement(4511..5125)
                     /locus_tag="ACFM6C_001353"
     CDS             complement(4511..5125)
                     /locus_tag="ACFM6C_001353"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0061603 - molybdenum cofactor
                     guanylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HFC6158805.1"
                     /translation="MKTSNFSKRTSAMKTFALILADGQASRMGGEDKGLALLGGKALI
                     DHVIDRVRPQVSHIAISTNRNLEEYARRSPHIFPDARQWQHFGPLSALCTAANDLQLA
                     TADWLLVVPCDMPYLPDDLVARFETVSKRTPLCNAYYVETPITMHYNIMYIRPQILQS
                     AIPYLFSGMKTLRSWLQQQRARPVRFEFDGHFADLNTQTDLQEG"
     gene            5331..7103
                     /locus_tag="ACFM6C_001354"
     CDS             5331..7103
                     /locus_tag="ACFM6C_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite sensor histidine kinase"
                     /protein_id="HFC6158806.1"
                     /translation="MILPARFSDGISLSLRLKLLTGVWVGLAALSVVLTLLLSLRLEN
                     AASVIEEAGNLRMQAYRLAYMAGEGSPRSQIDNQVDEFEKSLNRISQSDAIHPLIPSD
                     TPLAYDLIQSMLIIDWQAHILPPLQSYRRPTQVDLYRFAGNIELFLQALENANEKNTW
                     WLRRFQWAIMLMTLVSSVLMLFWHQIWVIRPLQALREGAERIGRRCFDIPVPEGGTPE
                     FKQVGRCFNQMGGRLKILYDDLEGQVAEQTRSLEKQNQNLTLLYQTTRDLHQSYIPQQ
                     AAEHFLNRILPAVGADSGRVCLDGESDVYVSIHHADCGTAASDLGKYHEEIFPIEYQN
                     ETLGRLLLSFSDGISLTGDDRTLLQTLIRQLGVSLASAKQEEEKRLLAVLQERNLIAQ
                     GLHDSIAQALTFLNLQVQMLETAFAENKREEAAENIGFIKTGVQECYEDVRELLLNFR
                     TKISNKEFPEAVADLFARFTQQTGITVETAWENGSFLPPQEAQLQMIFILQESLSNIR
                     KHARATHVKFTLSEHGGRFTMTIQDNGQGFDTEKIGEPTGSHVGLHIMQERAKRIHAV
                     LEIRSQAQQGTTVSLTVASEESLK"
     gene            7100..7756
                     /locus_tag="ACFM6C_001355"
     CDS             7100..7756
                     /locus_tag="ACFM6C_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HFC6158807.1"
                     /translation="MTIKIILIDDHTLFRSGIKSLLSRQHDFEVIGEAADGLSGIKMI
                     NRLQPDVVLLDLDMPGMNGREALSQIISINPQQAVIMLTVSEDNDDLTECMRIGARGY
                     LLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSSLTPRELEI
                     LGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNVPQPVLE
                     "
BASE COUNT         1985 a         2368 c         1888 g         1830 t
ORIGIN      
        1 agttttgagg aggataccca atccaagctt tgcaacagcc gccgccatat ccgctataat
       61 tcacgcttca gccatcctgc ccccgacata aaatcatgac cctgaaaacc gatttattgc
      121 ctaaaatcaa caacgaagat tatcaacgcc tcatcctcaa acacagtgcg gaatttagcg
      181 gtggcgaaat ccgcctgttg aacgaaatcc tcgaaaaatt caatttcgac gttgttcagg
      241 cgcaggcatt ggcgcaggcg gtgatgcagc aagtccgctt cgaccccaac gcctatcaca
      301 tcgacagcga cgacgaagac accacaggca tctgcccaca ctgcatcaac ccgcctatgc
      361 cgcccctgcg cgactatctc gtttggcgcg aaacgcgcgg gtaaaacgct tttgaccgtt
      421 atcttttcaa tgccgtctga aacgccgccg accgttcaga cggcataccc gacaaaggga
      481 acactatgct gcaaaccgac aacctgaccg ccgcgcaacc gcaacgcatc gttgccgccc
      541 aaaccgcctc cgcacaggaa gaactgctcg aacgcgccct gcgtcctaaa acgctggacg
      601 actatatcgg gcaagacaaa gccaaagaac agcttgccat cttcatccaa gccgccaaaa
      661 aacgcggcga agccctagac cacaccctgc tcttcggccc gcctggactg ggcaaaacca
      721 cactggcgca catcatcgcc aaagagctgg gcgtcaacct gcgccaaacc agcggccccg
      781 tcctcgaacg cgcaggcgac ctcgccgccc ttttgaccaa ccttgatccg cacgatgtat
      841 tgttcatcga cgaaatccac cgcctcagcc ctgttgtcga agaaatcctc tatcccgcgc
      901 tcgaagacta ccggctcgac attatgatag gcgaagggcc tgccgcccgt tccgtcaaaa
      961 tcgacctgcc gcccttcacc ctcgtcggcg cgaccacccg cgccggtatg ctgaccaatc
     1021 cgttgcgcga ccgcttcggc atcgtctccc gccttgagtt ttacgaaaac cgagacctta
     1081 ccaccatcgt cagccgttcg gcacaactgt tgcagctcga tatgtccgaa gaaggcgcgg
     1141 aagaaatcgc caaacgcagc cgcggtacgc cgcgcatcgc caaccgcctg ttgcgacgcg
     1201 tgcgcgattt cgccgacgtg aaaaacaacg gcacaatcga cggcggcatc gccgatgccg
     1261 ctttaagcat gctggacgtg gacgcgcagg ggctggacgt gatggacagg aaatttctcg
     1321 aagccgtttt gcacaaattc ggcggcggcc cggtcggttt ggacaatgtt gccgccgcca
     1381 tcggcgaatc aacagacacc atcgaagacg ttatcgaacc ctaccttatc caacaaggct
     1441 tcctgcaacg caccccgcgc ggcaggatgg cgaccgaacg cgcctacctg catttcgggc
     1501 tgcccgtcga aaaataacgc aatgccgtct gaaacagagc taattttcag acggcatttc
     1561 tatttcaatc attggcgcaa ggttcagcct gccgcttttg ccaattcaac cctcatcgca
     1621 tcaatcaccg ccttatagtc tggtttgccg aaaatcgcag aacctgccac aaaggtatcc
     1681 gcgccggctt gggcggcggc ggcaatattg tcggttttga tgccgccgtc cacttcaatg
     1741 gcaatacgtc tgccgctttt ctcttcatag cagtcaagca tggcgcgaac ctgtctgatt
     1801 ttttccaaag tctgcggaat gaagctctga ccgccgaacc cggggttgac cgacatcagc
     1861 aaaaccatat ccagcctgtc caatacgttt tccaacagat atacgggcgt tgccggattc
     1921 aacaccagcc ccgcctgaca gcccatatca cgaatcaggc tcaagctgcg gtcgatatgg
     1981 cggctcgctt cgggatgaaa agtgataatc gatgctcctg ctttggcaaa cgactgaatc
     2041 aggtcgtcaa cgggttcgac catcaaatgc acatcgatcg gcacgcttgc ataaggcttc
     2101 aacgccgcgc aaaccatagg gccgaaggtc aggttcggca cataatggtt gtccatcacg
     2161 tcaaaatgga tcagatctgc acctgccgca atgacgcttt ccacctcttc tccgaggcgg
     2221 gcaaagtctg ccgacaaaat actgggtgcg atacggtagg cggtcatatt ttttccttca
     2281 atgcctttac gggcggactc aacgcgggaa agccccgaaa cagcattatt aacaaaagtt
     2341 aactgccata ataccatctt tcacacggca atcaagtata ttgtccgaaa tatctggatt
     2401 aaaggaaaag ccgtgccact gcctgctccc tgccgttttg ccaaacctgc cgcctctttt
     2461 ttaagtatgg ctttgctttc ctgtcagctt tcccacgccg ccacggctta tatccccccg
     2521 aacgattttc aaccgaactg cgacatacgc cgactcgggc tgacccaaag tcagcacaat
     2581 gagctgcgta aaatccgcac cgccttcaaa atggcgggcg acagggcgcg tttgaaggtt
     2641 atgcattccg aacacagccg ccgccggtct gtcgtcgaaa tcatttcctc ggatgttttt
     2701 aatcggaacg aggcgcgcga ttatgtcgaa agccgctatt tgtccggtat ggattttgcg
     2761 gtggacgaat tggaaatcca acaccggttc ttccatatcc tcacaccgca acagcagcaa
     2821 atgtggcttt cttcctgcct caaataatcc ccgaaacgct cacaacgccc gttgtttcgg
     2881 cagcctgccc gcccagtcgc aggcaaactg ccacgcggaa cgtcccgaac ggctgccccg
     2941 cgtctgcgcc cactgcaatg ccgccatctg tgcggtttca tcatacggca cgccgaaatc
     3001 ttccagccaa ttttgcaccg ccgccagata atcgttttga tcgaacggat aaaaactgag
     3061 ccacaatccg aatcggtcgg acagggatat tttttcttcc accgcttctt tctgatggat
     3121 ttccccccgc atccccgtcg taccggcatt ctcgtcaaaa tattcgggca tcaggtgccg
     3181 tctgttggaa gtcgcgtaaa ccaaaacgtt ggcgcaacgt tgagacagac cgccgtctaa
     3241 cgcggttttc aatgccttat aggtttcatc gccgctttca aacgacaaat cgtcgcaaaa
     3301 tacgataaat ttttccggac gttccttcaa aagcgtcaac aggtaaggca ggccgattaa
     3361 atcgctttta tcgacttcga tcaggcgcaa tcccttatcc gcatattcgt gtagcagggc
     3421 tttgaccagc gaggatttgc ctgttccgcg cgcgccgctc atcaatacat tgttcgcggg
     3481 tctgccgaca atgaactgtt cggtattacg caccagcaat tcggtttgcc tgccgactcc
     3541 cgccagcctt accaagggaa aggtgtgcgg atcgggcaag tgttccaaaa aacctttttt
     3601 gcccgcactc tgccagcgga aggcaagcgc gttccaatcc gtatgcccgg gttcgggcgg
     3661 aagcacggca tccaaacgcc gcaaaacggc ataggcttta tcgagaaatt cgttcaattc
     3721 catctctgcc tcactttgca tatctttgcg ccatcagccg ttcgacggta tcgacgattg
     3781 cctgcgtatt cggatcgatt tcgatgttga tcctgtcgcc gacctttctg ctgccgaaca
     3841 gcgtccgttc caaagtttcg ggaatcagat ggacattgaa acggctgtct tcgactttgc
     3901 ctatggtcag gctgcaaccg tccaagccga cgaacccttt ggtcaggata tagggtttga
     3961 gttcgtgcgg gagcgaaaac caaaccgtgc ggttgtaccc gtcccgttcg atttcgacaa
     4021 taggcacggt tgccataatg tgtccgctca tgacgtgtcc gccgatttcg tctccgaaac
     4081 gcgccgcccg ttcgatgttg acgcaatcgc cttccttcag cagccctaaa ttggtttttg
     4141 ccaaagtttc cgccattaaa tcgaaactga cgcggtttcc ttcgatttcg gtaatcgtca
     4201 ggcagcagcc gttgttggcg accgatgcgc cgcgttgcag attgtccgcc gcctcttgcg
     4261 gaagctcgac gacataagtc tgaaatgcct ccgacgggcg gtggattgcc gtcagttttc
     4321 ccaatccttg aacaatgcct gtaaacataa tcctgtttcc ctgtgtcggt aaaaatggtg
     4381 caaattgtag catctccccg cgaaaaatgc cgtctgaaat gccttcagac agcattatgc
     4441 ctccgattcg ggcaaaaacc gcccggtacg gcttgacctt tcctttccac gccggtcggc
     4501 ggtcttaccc ttatccctcc tgcaaatcag tttgcgtgtt caagtcggca aaatgcccgt
     4561 caaactcgaa tctgaccggt cgcgcccttt gctgctgcaa ccagcttctt aatgttttca
     4621 tacccgaaaa cagataggga atcgcgcttt gcagaatctg cgggcggata tacataatgt
     4681 tgtagtgcat cgttatcggc gtttccacat aatacgcatt gcacaacggt gtgcgtttcg
     4741 acacggtttc aaacctcgcc accaaatcgt ccggcagata cggcatatcg cacggcacaa
     4801 ccaaaagcca gtcggcagtc gccaactgca aatcgttggc tgcggtacac aatgccgaaa
     4861 gcgggccgaa atgctgccac tgccgtgcgt ccggaaaaat atgcggactt cttcgagcat
     4921 attcttccaa attccggttg gtgctgatgg cgatatggct gacctgcggc ctgaccctgt
     4981 cgatgacatg atctatcagt gccttacccc ccaaaagagc aagccccttg tcctcgcctc
     5041 ccatacggct cgcctgaccg tcggccagta tcagggcaaa agttttcatt gcggatgttc
     5101 tcttggaaaa gttcgaggtt ttcatgattg cagtctgccg ttcccaatga ctcaaaatgc
     5161 cgtctgaagc agacggcaaa taaattcata ttatctgaat tttatcataa catgatttaa
     5221 cactgaagcg gtgcggatta agttttcctt aaccaattct ttctgagcag ttgtatctaa
     5281 ttccaaagaa tgatattgtt tgcattattt ggaacaattt ttcgccgagc atgatactgc
     5341 cagcccgttt ttcagacggc atcagccttt ccctacgcct gaaactcctg accggagtgt
     5401 gggtcgggtt ggcggcattg tctgtcgttt tgacactgct gctctctttg cgtctggaaa
     5461 acgcggcctc cgtcatcgaa gaggcgggca acttgagaat gcaggcatac cgtctggcat
     5521 acatggcggg tgaaggatct ccccgctccc aaatagacaa tcaggttgac gaatttgaaa
     5581 aaagcctgaa tcgtatttca caaagtgatg ccatccatcc gctgattcct tcggacaccc
     5641 ctcttgctta tgatttgata caatccatgc tgattataga ttggcaggca cacatcctcc
     5701 ccccgctcca gtcctaccgg cgaccgactc aggtcgatct ctaccgcttt gccggaaaca
     5761 tcgaactgtt tttgcaggca ttggaaaatg ccaacgaaaa aaacacatgg tggctcaggc
     5821 gttttcaatg ggcaattatg ttgatgacgc tggtgtcgtc tgtactgatg ctgttttggc
     5881 accagatttg ggttatccgg ccgctgcagg cgttaaggga aggtgcggaa cgcatcggac
     5941 ggaggtgttt cgatattccg gttcccgaag gcggtacgcc ggaattcaaa caggtcgggc
     6001 gttgtttcaa tcaaatgggc ggcaggttga aaattttata tgatgatttg gaaggacaag
     6061 tcgccgagca gacacgcagt ctcgaaaaac aaaatcaaaa cctgaccctg ctgtaccaaa
     6121 ctacacggga cctgcaccaa tcctacatac cgcaacaggc tgcagaacat tttctaaacc
     6181 gtatcctgcc cgccgtagga gcagattccg gcagagtttg tttggacggc gaatccgatg
     6241 tttatgtttc cattcatcat gcggattgcg gcacagcagc ttcggatttg gggaagtacc
     6301 atgaggaaat cttccccatt gagtaccaga acgaaacatt gggcaggctg ttgctcagct
     6361 tttcagacgg catttccctc accggagacg accgcacgct gcttcaaacc ctgattcggc
     6421 aattgggcgt atcgctcgct agcgcgaagc aggaagaaga aaaacgcctg cttgcagtat
     6481 tgcaggaacg caacctgatt gcgcaaggat tacatgacag catcgcacaa gcattaacgt
     6541 tcctaaacct acaggtacag atgctggaaa ccgcctttgc cgaaaacaaa cgggaggaag
     6601 ccgcagaaaa catcggcttc atcaaaacag gcgtgcagga atgttatgaa gatgtccgcg
     6661 aactgctgct caacttccgt accaaaatca gcaataaaga atttcccgaa gccgttgccg
     6721 acctattcgc ccgctttacg caacaaaccg ggataacggt cgaaaccgcc tgggaaaacg
     6781 gttcgttcct gccgcctcag gaagcgcagc tccaaatgat ttttatcctg caggaaagcc
     6841 tgtccaacat ccgcaaacac gcccgcgcca cccatgtaaa attcaccctt tccgaacacg
     6901 gcggacgctt taccatgacc atccaagaca acggacaagg tttcgacacg gagaaaatag
     6961 gagaacccac gggcagccat gtcggactgc acatcatgca ggagcgtgcc aaacgcatcc
     7021 atgccgtttt agaaatccgt tcccaagctc aacagggaac caccgtctca ttgacggttg
     7081 catctgaaga aagcttgaaa tgaccattaa aattatcctg atagacgacc ataccctctt
     7141 ccgcagcggc attaaatccc ttttgtcgcg ccaacatgat tttgaggtca tcggcgaagc
     7201 cgcagacggc ctctcgggca ttaaaatgat caaccggctc caacccgatg tcgtcctgct
     7261 tgaccttgat atgcccggta tgaacggacg cgaagcactc tcccaaatca tcagcatcaa
     7321 tccgcagcag gcagtgatta tgctgaccgt ttccgaagac aacgacgact tgaccgaatg
     7381 tatgcgcatc ggcgcgcgcg gctacctgct gaaaaacatc aacgccgact ttctgctcga
     7441 aagcatacgc aaagccgccg aaggcgataa tgtattctcg cccgagatga ccgccaaact
     7501 cgtcaaaagc ctgatttccc cccaacctgc ccaagggacg caggcactct cctcacttac
     7561 ccctcgcgaa ctggaaatct tgggctatct cgccgcagga cacagcaaca aaatcatcgc
     7621 ccgccacctc gatcttgccg aatccaccgt caaagtccac gttcaaaacc tgctccgcaa
     7681 actcaacctc agcagccggg tgcaggccgc tgtttacgcc atccggcaca acgtccccca
     7741 acccgtgctg gaataaggcg ggttcagacg gcatattagg ggttttaatc cccgtacggt
     7801 cattcggata acagaccaag catgtaagtt tatgccccca taagtacgct tggcatagca
     7861 gtaatattgt tcggttcagt gttttccgtt tgcccctatc tgatactgca atatcagcta
     7921 tgccgtctga aaacgcatca tcatgatatt ttcagacggc ataataaaaa gcggaaatac
     7981 taatgcaggg taaaatgttc cattccgaat cccataaata tacaatggct tatatcgttt
     8041 aagcatgtgt aacccaccct catatcaatc a
//
LOCUS       DAXHPV010000089         8042 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.089, whole genome shotgun sequence.
ACCESSION   DAXHPV010000089 DAXHPV010000000
VERSION     DAXHPV010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8042)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8042)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8042
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.089"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(68..814)
                     /locus_tag="ACFM6C_001356"
     CDS             complement(68..814)
                     /locus_tag="ACFM6C_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFC6158808.1"
                     /translation="MDFRFDIIYEYRWMFLYGALTTLGLTVVATAGGSVLGLLLALAR
                     LIHLEKAGAPMRVLAWALRKVSLLYVTLFRGTPLFVQIVIWAYVWFPFFVHPSDGILV
                     SGEAAIALRRGYGPLIAGSLALIANSGAYICEIFRAGIQSIDKGQMEAARSLGLTYPQ
                     AMRYVILPQALRRMLPPLASEFITLLKDSSLLSVIAVAELAYVQNTITGRYSVYEEPL
                     YTVALIYLLMTTFLGWIFLRLEKRYNPQHR"
     gene            complement(798..977)
                     /locus_tag="ACFM6C_001357"
     CDS             complement(798..977)
                     /locus_tag="ACFM6C_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003708735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158809.1"
                     /translation="MNGKCRLKTARPAFLRRRATAVCRDKKVQAAVFTVKWRIILQRR
                     QFRRFLIRTVYGFSF"
     gene            complement(993..1664)
                     /locus_tag="ACFM6C_001358"
     CDS             complement(993..1664)
                     /locus_tag="ACFM6C_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HFC6158810.1"
                     /translation="MQIKKIMKWFPVALSLLGALGYTGYGSEAVRTAVAVLDVLGAAG
                     DAGSDAPARRRASAKSGHRYTGTVSKVYDGDTLHVIDGDGAKHKIRMAYIDAPEMKQA
                     YGTRSRDNLRAAAEGRKVSVRVFDTDRYQREVAQVSVGKTDLNLMQVQDGAAWHYKSY
                     AKEQQDKADFADYADAQIQAERERKGLWKAKNPQAPWAYRRAGRSGGGNKDWMDAVGE
                     WLGIW"
     gene            complement(1733..2404)
                     /gene="rpiA"
                     /locus_tag="ACFM6C_001359"
     CDS             complement(1733..2404)
                     /gene="rpiA"
                     /locus_tag="ACFM6C_001359"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HFC6158811.1"
                     /translation="MTTQDELKRIAAEKAVEFVPENEYIGIGTGSTINFFIEALGKSG
                     KKIKGAVSTSKKSSELLAQYDIPVVSLNEVSGLAVYIDGADEVNHALQMIKGGGGAHL
                     NEKIVASASEKFICIADESKYVSRLGKFPLPVEVVESARSLVSRKLLAMGGQPELRIG
                     YTTFYGNQIVDVHGLNIDKPLTMEDEINKITGVLENGIFARDAADVLILGTEEGAKVI
                     YPCQG"
     gene            complement(2481..2963)
                     /gene="ispF"
                     /locus_tag="ACFM6C_001360"
     CDS             complement(2481..2963)
                     /gene="ispF"
                     /locus_tag="ACFM6C_001360"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HFC6158812.1"
                     /translation="MTNIRIGQGYDVHQLTEGRKLILGGVEIPFEKGLLGHSDADALL
                     HAVTDALLGAAGLGDIGSHFPDTAAEFKDADSRVLLRAAYQSVQAQGWQAVNVDTTVI
                     AQKPKLAPHIPQMRANIAADLGIDISCVNIKGKTNEKLGYLGRMEGIEAQAAVLLVRI
                     "
     gene            complement(2995..3684)
                     /gene="ispD"
                     /locus_tag="ACFM6C_001361"
     CDS             complement(2995..3684)
                     /gene="ispD"
                     /locus_tag="ACFM6C_001361"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HFC6158813.1"
                     /translation="MKRKNIALIPAAGIGARFGADKPKQYVEIGSKTVLEHTLGIFER
                     HEGVDLTVVVVSPEDTFADKVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAAET
                     DNILVHDAARCCLPSEALTRLIEQAGNAAEGGILAVPVADTLKRAEGGQISATVDRSG
                     LWQAQTPQLFRAGLLHRALAAENLDGITDEASAVEKLGIRPLLVQGDARNLKLTQPQD
                     AYIVRLLLDAV"
     gene            complement(3681..4415)
                     /gene="dnaQ"
                     /locus_tag="ACFM6C_001362"
     CDS             complement(3681..4415)
                     /gene="dnaQ"
                     /locus_tag="ACFM6C_001362"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HFC6158814.1"
                     /translation="MTTRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLY
                     VHPERDMPEEAARVHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFL
                     NMEFRRMGLPTVEELGCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALI
                     DCELLGEVYLAMTRRQFDLMGAAAEEKMETKPVVHTETKRSGKLKVIRADENELAEHG
                     QYLDGLGEACIWRKEAVPSENGGTDA"
     gene            complement(4571..5881)
                     /locus_tag="ACFM6C_001363"
     CDS             complement(4571..5881)
                     /locus_tag="ACFM6C_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFC6158815.1"
                     /translation="MYAKKGGLGLVKSRRFAPLFATQFLGAFNDNVFKTALFVMIGFY
                     GLGQNGFLPAGQMLNLGALLFILPYFLFSSLSGQLGNKFDKAVLARWVKVLEMIIMAV
                     AAYGFYIRSAPLLLACLFCMGAQSTLFGPLKYAILPDYLDDKELMMGNSLIESGTFVA
                     ILFGQILGTAVAGVPPYIVGILVLLVAVGGTVGSLFMPSVPAKAADTQIEWNIVRGTK
                     SLLSETVRHKPVFTAIIGISWFWFVGAVYTTQLPTFTQIHLGGNDNVFNLMLALFSIG
                     IAAGSVLCAKFSRERLMLAWVTVGALGLTVCGLVLVWLTHGHRFEGLNGIFWFLSQGW
                     AYPVMAVMTLIGFFGGFFSVPLYTWLQTASSETFRARAVAANNIVNGIFMVSAAVLSA
                     VLLFLFDSISLLYLIVALGNIPLSVFLIKRERRFLGAAAIRKKP"
     gene            complement(5871..6056)
                     /gene="ccoS"
                     /locus_tag="ACFM6C_001364"
     CDS             complement(5871..6056)
                     /gene="ccoS"
                     /locus_tag="ACFM6C_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HFC6158816.1"
                     /translation="MESMFILVPISIILAFVIGWFFWWSGKNGQFDDLEGPAHRILMD
                     DDSTSKLIEKERENDVR"
     gene            complement(6056..6355)
                     /locus_tag="ACFM6C_001365"
     CDS             complement(6056..6355)
                     /locus_tag="ACFM6C_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158817.1"
                     /translation="MHYFSIHDQSGRHIGFFILLADDESEARPQSGRFAVKLEGGMEN
                     HVLSPFGQTEIPQYWRVVKDRIELFFDEAPVGTLRNEYLTVSGQTFVLNDLTGNM"
     gene            6706..7902
                     /locus_tag="ACFM6C_001366"
     CDS             6706..7902
                     /locus_tag="ACFM6C_001366"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HFC6158818.1"
                     /translation="MSQKLILVLNCGSSSLKGAVLDNGSGEVLLSCLAEKLNLPDAYI
                     TFKVNGEKHKVDLSAHPDHTGAVEALMEELKAHGLDSRIGAIGHRVVSGGELYSESIL
                     VDDEVIAGIEKCIPLAPLHNPAHLLGLRAAQSIFKDLPNVVVFDTSFHQTMPEVAYKY
                     AVPQELYEKYGLRRYGAHGTSYRFVADETARFLGKDKKDLRMVIAHLGNGASITAVAN
                     GESRDTSMGLTPLEGLVMGTRSGDIDPSVFGFLAENANMTIAQITEMLNKKSGLLGIS
                     GLSNDCRTIEEEAAKGHKGAKLALDMFIYRLAKYIGSMAVAAGGLDALVFTGGIGENS
                     DIIRERVIGYLGFLGLNIDQEANLKARFGNAGVITTAGSKAVAVVIPTNEELMIAHDT
                     ARLSGL"
BASE COUNT         1897 a         2402 c         1963 g         1780 t
ORIGIN      
        1 ataaatttac cacaaaaaag ctgcctcaaa tgaatacccg ggcagctttt tgttgatatg
       61 actccaatca gcggtgttgc ggattgtaac gtttttccaa acgcaggaat atccagccta
      121 agaaagtcgt catcaacaga taaatcaggg cgacggtgta aagcggttct tcataaaccg
      181 aataccggcc cgtaatcgta ttctgaacat acgccaactc cgccacagca atgaccgaca
      241 gcagcgagct gtctttcaag agcgtgatga actcgctcgc caaaggcggc agcatgcggc
      301 gcaatgcctg cggcagaatc acatagcgca tcgcctgcgg ataggtcagc cccaaagaac
      361 gcgccgcctc catctgtcct ttgtctatag actggatgcc cgcgcggaaa atctcacaga
      421 tatacgcccc cgagttggcg atcagtgcca aagaaccggc aatcagcggc ccgtatccgc
      481 gacgcagcgc gattgccgcc tcgccgctga ccaaaatgcc gtctgaagga tggacgaaaa
      541 acggaaacca cacatacgcc caaatcacaa tctgcacaaa cagcggcgta ccccggaaca
      601 gcgtaacata cagcagcgaa accttacgca acgcccacgc cagcacgcgc atcggcgcac
      661 cggctttttc caagtgaatc aggcgcgcca acgccaacaa cagacccaat accgaaccgc
      721 ccgccgtcgc cacgaccgtc agccccaagg tcgtcagtgc gccgtaaagg aacatccagc
      781 ggtattcgta aataatgtca aaacgaaaat ccatataccg tccgtatcaa aaaccggcgg
      841 aactgccgcc gttgcaaaat aatccgccat tttaccgtaa aaaccgccgc ctgaactttt
      901 ttatcgcggc agacggcggt tgcgcgtctc cgcaaaaatg cagggcgcgc ggttttcaga
      961 cggcatttgc cgttcaaagc cgtgcggtgt ctttaccaaa tgcccaacca ttcgcccacg
     1021 gcatccatcc aatccttatt gcccccgccg ctcctgcctg ctcggcggta cgcccacggc
     1081 gcttgcggat ttttagcttt ccacaatcct ttgcgttccc tttccgcctg aatttgagcg
     1141 tcggcatagt cggcaaaatc cgccttatcc tgctgttctt tagcataact tttataatgc
     1201 cacgccgccc cgtcctgcac ctgcatcagg ttcaaatcgg ttttgccgac agaaacctgc
     1261 gccacttcgc gctggtagcg gtcggtgtcg aacacgcgca cgctgacttt cctgccttcc
     1321 gccgccgcgc gcaggttgtc gcgcgaacgc gtgccgtaag cctgtttcat ctccggcgcg
     1381 tcgatatacg ccatccggat tttgtgtttc gcgccgtcgc cgtcgataac gtgaagggtg
     1441 tcgccgtcat agactttgga caccgtgcct gtgtagcggt ggccggattt cgccgatgcc
     1501 cgtcggcggg cgggcgcgtc ggaacccgcg tcccctgccg cgccgagtac gtcgagtacg
     1561 gcaaccgccg tccgcaccgc ctcgctgccg taccccgtat aacccaacgc acccaaaagc
     1621 gacagggcga cgggaaacca tttcatgatt tttttaatct gcatattttt caaatgccga
     1681 tgccgtctga acatatcgga atcggatttc agacggcatc ttaacgtcag gattaccctt
     1741 ggcagggata gatgactttc gcaccctctt ccgtccccaa aatcaacaca tcggcggcat
     1801 cgcgggcgaa tattccgttt tcgagtacgc cggtgatttt gttgatttcg tcttccatcg
     1861 tcagcggttt gtcgatattc aagccgtgga catcgacgat ttggttgccg taaaaagtgg
     1921 tgtagccgat acgcaattca ggctgtccgc ccatagcgag cagtttgcgc gaaacaaggg
     1981 aacgcgcgct ttcgacgact tccacgggca gagggaattt gcccaaacgt gaaacatatt
     2041 tgctttcatc cgcaatgcag atgaattttt ctgatgcgct ggcgacgatt ttttcgttga
     2101 ggtgcgcgcc gccgccgccc ttaatcattt gcagggcgtg gttcacttca tccgcaccgt
     2161 cgatatagac cgccaaaccc gatacttcgt tcagggaaac gacgggaatg tcgtactggg
     2221 caagcagttc gctggatttt ttggaggttg aaaccgcgcc tttgattttt ttgccgctct
     2281 tgcccaaggc ttcgatgaaa aagttgatgg tcgagccggt accgatgccg atgtattcgt
     2341 tttcgggtac gaattcgact gctttttcgg cagcgatgcg cttgagttcg tcttgtgtcg
     2401 tcatattttt gtcctttggg aaaccgtatc aacaaacagc cgccatctta acatttattt
     2461 gcacgtcctg cccgccgcgt tcaaatccgt accagcaata ccgccgcctg cgcctctatg
     2521 ccttccatgc gcccgagata accgagtttt tcgttggttt tacctttgat gttgacacac
     2581 gaaatgtcta tgcccaaatc ggcggcgatg ttggcacgca tttgcggaat atgcggcgcg
     2641 agtttgggtt tctgtgcaat cacggtcgta tcgacattga ccgcctgcca accctgcgcc
     2701 tgaacgcttt gatacgccgc acgcaaaagg acgcggctgt ccgcatcttt gaactctgcg
     2761 gcggtgtcgg ggaaatggct gccgatatcg cccaaacctg ccgcgccaag cagcgcgtcg
     2821 gtaacggcgt gcagcagcgc atcggcatcg gagtgtccga gcagcccttt ttcaaatggg
     2881 atttcaactc cgccaagtat cagctttctg ccttcggtca gttggtggac atcgtagccc
     2941 tgtccgatac ggatgttcgt catcgtttgt gttcctgatg gtttgaattg aagttcagac
     3001 ggcatcgagc agcagcctga cgatgtatgc gtcctgcggc tgcgtcagtt tcaaattgcg
     3061 cgcgtcgccc tgcaccagca aagggcggat gcccaatttt tccacggcgg acgcttcatc
     3121 ggtaatgccg tccaagtttt ccgcagccaa tgcgcggtgc agcagcccgg cgcggaaaag
     3181 ctgcggcgtt tgcgcctgcc aaagccccga acggtcgaca gttgcactga tttgtccgcc
     3241 ttctgcgcgt ttgagcgtat cggcaacggg aactgccaaa attccgcctt cggcagcgtt
     3301 gcccgcctgt tctatcaacc gcgtcagagc ttcagacggc aggcagcatc gggcggcatc
     3361 gtgtaccaaa atattgtcgg tttccgccgc caaaccggtt tccaacaatt ttgccacacc
     3421 gtttcggacg gtttcggcgc gggtctgtcc gccgtttttc cacacccgaa cctgtggaaa
     3481 tgccgtctga accttatcgg caaacgtgtc ttcgggcgag acgacaacga cggtcaaatc
     3541 gacgccctca tgccgttcaa aaatcccaag cgtatgttct aaaacggttt tgcttccgat
     3601 ttcgacatat tgcttgggtt tgtccgcacc gaaacgcgcc ccgatgccgg cggcgggaat
     3661 cagcgcgata tttttgcgct tcatgcgtcc gtcccgccgt tttcagacgg cacggcttcc
     3721 ttgcgccaga tacaggcttc gcccaagccg tccaaatatt gcccgtgttc cgccaactcg
     3781 ttttcgtccg ccctgatgac tttcagtttg ccgctgcgtt tggtttcggt atgcaccacg
     3841 ggtttggttt ccattttttc ctctgcggcc gcacccatca ggtcgaactg ccgccgcgtc
     3901 atagcaagat agacttcgcc caaaagttcg cagtcgatca atgcgccgtg caggacgcgc
     3961 ttgctgcggt cgacggaaaa acggttgcac aaggcatcca ggctggcttt ctgcccgggg
     4021 aacatttcgc gcgccatcgc cagggtatcg gtaacggtac agccgagttc ctcaacggtc
     4081 ggcaacccca tccggcggaa ctccatattg aggaagccca cgtcgaattt ggcattgtgg
     4141 ataatcagtt ccgcaccgcg caggaaatcg gcaatctgcc tgccgacctc tgcaaacggc
     4201 ggcgcgtttt tcccttccaa aacctctatc gtcagaccgt gcaccctcgc cgcctcttcg
     4261 ggcatatcgc gctcggggtg gacatagagg tgcaggtttt tgtcggtcat ttggcggttg
     4321 accatttcta aaccggcaaa ctcgaccaag cggtcgccgc cgtcggcata cagaccggtg
     4381 gtttcggtat cgaggatgat ttggcgtgtc gtcatatcgg tgtctttctt ctatcttcgt
     4441 aaattgctta ttttttaagc aatgtatttt tctgttttca tttcaatgca caaacccact
     4501 tattcacagt gtgttcacaa cattgggcag gcggattgtg tattttgggg acaatttttt
     4561 cagacggcat tcaaggtttt ttcctgattg ccgccgcgcc taaaaaccgc ctttcgcgct
     4621 taatcaaaaa taccgacaac ggaatattgc ccaaagcgac aatcagatac aacaaggaaa
     4681 tgctgtcaaa caaaaacagc aacaccgcgc tcaaaacggc ggcggaaacc ataaaaatac
     4741 cgttaacgat attgttggcg gcaacggcgc gggcgcggaa agtctcgcta ctggcggttt
     4801 gcagccaagt atagagcgga acggagaaaa atccgccgaa aaagccgatc agcgtcatca
     4861 ccgccatcac gggatatgcc catccttgcg ataaaaacca aaaaatgccg ttcagccctt
     4921 caaaacggtg tccgtgcgtc agccacacca aaaccaggcc gcaaaccgtc aaacccaacg
     4981 caccaaccgt tacccaagcc aacatcagcc gttccctgct gaacttggca cacagtaccg
     5041 aaccggcggc aataccgatg gaaaacaggg caagcatcag gttgaaaaca ttgtcgttgc
     5101 cgcccagatg gatttgggta aaggtcggca gttgcgtggt ataaaccgcg ccgacaaacc
     5161 aaaaccacga aataccgata atggcggtaa aaacgggctt gtgccgcacc gtttcactca
     5221 gcagggattt tgtgccacgg acaatattcc actcaatttg tgtatcggca gccttggcgg
     5281 gtacagacgg cataaacagg ctgccgaccg tgcctccgac ggcgaccagc aaaaccagta
     5341 tcccgacaat ataaggcggt acacctgcca ccgccgttcc caaaatctga ccgaacagga
     5401 tggcgacaaa cgtacccgat tcaatcaggc tgttgcccat catcaactct ttgtcgtcga
     5461 gataatcggg caggatggcg tatttcagcg gcccgaacag cgtcgattgc gcgcccatgc
     5521 aaaacagaca cgccaaaagc agcggggcag accggatata aaacccgtat gccgccaccg
     5581 ccataatgat catttccagc accttgaccc aacgcgccaa aacggccttg tcgaatttgt
     5641 tacccaactg ccccgacagc gaggaaaaca ggaaatacgg caaaataaac agcaacgcgc
     5701 ccaagttcaa catctgtccg gcaggcagga agccgttttg ccccaaaccg taaaacccaa
     5761 tcatcacaaa cagcgcggtt ttgaacacat tgtcgttgaa cgcgccgaga aactgcgtag
     5821 cgaaaagagg tgcgaaacgg cggcttttaa ccagtcccaa accgcctttt ttagcgtaca
     5881 tcgttttccc tctctttttc aatcagttta cttgtcgaat catcatccat caggatgcgg
     5941 tgcgccggcc cttccaagtc gtcaaactgc ccgtttttgc ccgaccacca aaaaaaccag
     6001 ccgatgacaa acgccaaaat aatgctgatg ggcaccaata taaacatgct ttccatcaca
     6061 tattccctgt caaatcgttc aaaacaaaag tctgccccga tacggtcaga tattcgttac
     6121 gcaaagttcc gacgggagct tcgtcaaaaa acagctcgat acggtctttg accacgcgcc
     6181 aatattgggg gatttccgtc tgaccgaacg gcgacaggac atgattttcc attccgcctt
     6241 caagtttgac ggcaaaacgc ccgctttgcg gccgtgcttc cgattcgtcg tcggcaagca
     6301 ggatgaaaaa gcctatatgc cgtcccgatt ggtcatgaat actgaaataa tgcataaatt
     6361 tcccacccgc cttttttcag acgacaccaa ctaaaaacag ggcgaatgta ccagtttgga
     6421 cgggaagaat gcaaagaaat tctccctccc ccagccgaaa acaccggcaa accgcatatc
     6481 cccctttttt ccgtcaaaat gcccgacttc cgccattttc acgcaaacgc ccgattaagc
     6541 caagcaattg caaagatttt ttgctagaat agcctgcttc ttttatcaac cttttcagac
     6601 ggccccacta ctttcccgcc caggaaggca aaacggattc ggcacgaatc cggttagtat
     6661 ccgtgtccga ttccaatgcc gtctgaaact ttccggagta agaaaatgtc ccaaaaattg
     6721 atcttggttt tgaactgcgg cagctcgtcc ctcaaaggcg cggtcctgga taacggcagc
     6781 ggcgaagtcc tgctcagctg ccttgccgaa aaactcaacc tgcccgatgc ctacatcaca
     6841 ttcaaagtaa acggcgaaaa acacaaagtc gatctgtccg cacatcccga ccacaccggc
     6901 gcggtcgaag ccctgatgga agaactcaaa gcccacggcc tcgacagccg catcggcgcc
     6961 atcggccacc gcgtcgtcag cggcggcgaa ctgtacagcg aatccatcct cgttgacgac
     7021 gaagtcattg ccggcatcga aaaatgcatc ccgctcgccc ccctgcacaa ccccgcccac
     7081 ctcttgggcc tgcgtgccgc gcaaagcatt ttcaaagacc tgcccaacgt cgtcgtattc
     7141 gatacctcct tccaccaaac catgcccgaa gtcgcctaca aatacgccgt tccgcaggag
     7201 ttgtatgaaa aatacggcct gcgccgttac ggcgcgcacg gtaccagcta ccgcttcgtc
     7261 gccgacgaaa ccgcgcgctt cctcggcaaa gacaaaaaag acctgcgtat ggtcattgcc
     7321 cacttgggca acggcgcgtc cattaccgcc gtcgccaacg gcgaatcgcg cgacaccagt
     7381 atgggcctga ccccgctgga agggctggta atgggtacgc gcagcggcga catcgatcct
     7441 tccgtattcg gcttcctcgc cgaaaacgcc aatatgacca tcgcccaaat cactgaaatg
     7501 ctgaacaaaa aatccggtct gctcggcatt tccggcctgt ccaacgactg ccgcaccatt
     7561 gaagaagaag ccgccaaggg gcataaaggc gcgaaattgg ccttggatat gtttatctac
     7621 cgccttgcca aatacatcgg cagtatggcg gttgccgcag gcggtttgga cgcactggtc
     7681 tttaccggcg gcatcggcga aaactccgac atcatccgcg aacgcgtgat cggctacttg
     7741 ggcttcctcg gtctgaacat cgaccaagaa gccaacctga aggcacgctt tggcaacgcc
     7801 ggcgtgatta ccactgccgg cagcaaagcc gttgccgtgg tcattccgac caacgaagag
     7861 ctgatgattg cccacgacac tgcccgtttg agcggcttgt aaggttttat ccgcacacga
     7921 actgcctctg gaaacggagg cagttttttt atccggcttt ccatgcttaa acagcactgc
     7981 ctcttttcag acattgacgg ttgcagccgc ttacctgaac cttatagtgg attaaattta
     8041 aa
//
LOCUS       DAXHPV010000090         7944 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.090, whole genome shotgun sequence.
ACCESSION   DAXHPV010000090 DAXHPV010000000
VERSION     DAXHPV010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7944)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7944)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7944
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.090"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(65..1312)
                     /gene="fabF"
                     /locus_tag="ACFM6C_001367"
     CDS             complement(65..1312)
                     /gene="fabF"
                     /locus_tag="ACFM6C_001367"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HFC6158819.1"
                     /translation="MSQRRVVITGLGQVSPVGNTVAEAWDTLLAGKSGIGAITRFDAS
                     DINSRVAGEVRGFDIGQYISAKEARRMDVFIHYGIAAALQAIADSGLDDVENLDKDRI
                     GVNIGSGIGGLPSIEVTGKAVIEGGARKINPFFIPGSLINLISGHVTILKGYRGPSYG
                     MVSACTTGAHAIGNSARLIKYGDADIMVAGGAEGAISTLGVGGFAAMKALSTRNDDPA
                     TASRPWDKGRDGFVIGEGAGILVLEELEHAKKRGAKIYAEIVGFGMSSDAYHITAPNE
                     EGPALAVTRALKDAGINPEDVDYVNAHGTSTPLGDANETKALKRAFGEHAYKTVVSST
                     KSMTGHLLGAAGGVEAVYSILAIHDGKIPPTINIFEQDVEAGCDLDYCANEARDAEID
                     VAISNSFGFGGTNGTLVFKRFKG"
     gene            complement(1468..1704)
                     /gene="acpP"
                     /locus_tag="ACFM6C_001368"
     CDS             complement(1468..1704)
                     /gene="acpP"
                     /locus_tag="ACFM6C_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HFC6158820.1"
                     /translation="MSNIEQQVKKIVAEQLGVNEADVKNESSFQDDLGADSLDTVELV
                     MALEEAFGCEIPDEDAEKITTVQLAIDYINAHNG"
     gene            1936..2943
                     /locus_tag="ACFM6C_001369"
     CDS             1936..2943
                     /locus_tag="ACFM6C_001369"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006222 - UMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HFC6158821.1"
                     /translation="MYPLARRILFALDAEKAHHFTLDALNMVYKLGLIPVTGNRTKPV
                     KLMGLDLPNPVGLAAGLDKNGEYIDALGALGFGFIEIGTVTPNPQPGNPQPRLFRVPE
                     YQGIINRMGFNNHGIDAMIQNIEKSKFSGVLGINIGKNAVTPIENAADDYLICLEKAY
                     AHASYITVNISSPNTKNLRALQGGDELSALLEALKNKQAQLASVHGKYVPLAVKIAPD
                     LDEAQIEDIAHVVKSVEMDGIIATNTTIDKSSLGSHPLAGEQGGLSGLPVHEKSNRVL
                     KLLADHIDGKLPIIGVGGIMEGEDAAEKIRLGATAVQVYSGLIYKGPALVKECLKALA
                     R"
     gene            2959..3138
                     /locus_tag="ACFM6C_001370"
     CDS             2959..3138
                     /locus_tag="ACFM6C_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158822.1"
                     /translation="MPSKRTFCRSDGIFISFFRLPPLENPLRAALFEIRQTPAANRTI
                     LIRSQSKSGGKLLNI"
     gene            3276..3599
                     /locus_tag="ACFM6C_001371"
     CDS             3276..3599
                     /locus_tag="ACFM6C_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158823.1"
                     /translation="MFKDELNEFIRLISDPESELDEWYLSDFKDEHIWEMQSYEAFSC
                     LREAVPYLFAYPRYGYELLEIISALKETSDTTELFYEPGIVPLLIDLYKEDSYLVNMV
                     KRIFK"
     gene            3686..3967
                     /locus_tag="ACFM6C_001372"
     CDS             3686..3967
                     /locus_tag="ACFM6C_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158824.1"
                     /translation="MENGQRNNRFPLEKRIFYLEHSGRYLMICALSDYSQNKHTVVMA
                     NFIYPDEKTDWRNLDDLFNELVLEELQASFMDWHPTVEEAISRHLEDFS"
     gene            4020..4493
                     /locus_tag="ACFM6C_001373"
     CDS             4020..4493
                     /locus_tag="ACFM6C_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2247 family protein"
                     /protein_id="HFC6158825.1"
                     /translation="MNLDLTAQKVRLSWKDILWGYGNKYLGWADVAAYARKMTLSDHD
                     ERVFKLSLINKSNILELKPVLEDLASEMRDYSPKNWLYVLLSDVFHRKEEFEDPLGEV
                     EKIYADFDYPEEIESFVRYMPPKDGYIPSAHTYEENIARLYSHWEHYLNNGGGQG"
     gene            4602..4838
                     /locus_tag="ACFM6C_001374"
     CDS             4602..4838
                     /locus_tag="ACFM6C_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158826.1"
                     /translation="MKRLEDMIMGFWDSAANLAKEAGEGVKRFNERSRKLQNEYQQES
                     SEKLRRVVNSEGFFGNSAQEKAIARKVLKERGEG"
     gene            5035..7725
                     /gene="glnE"
                     /locus_tag="ACFM6C_001375"
     CDS             5035..7725
                     /gene="glnE"
                     /locus_tag="ACFM6C_001375"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008882 - [glutamate-ammonia-ligase]
                     adenylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HFC6158827.1"
                     /translation="MSDNRLDTARRHSLFLARQLDNGKLKPEIFLPMLDKVLTEADFQ
                     AFADWDKIRAEENEEELARQLRGLRRYVVSQIIVRDINRISDLNEVTRTITLFADFAV
                     NTALDFAYAYYRDMYGTPIGRYTKSPQHLSVVAMGKAGGYELNVSSDIDLIFTYPESG
                     DTDGRRERGNQEFFTKVGQKLIALLNDITADGQVFRVDMRLRPDGDSGALVLSETALE
                     QYLITQGREWERYAWCKGRVVTPYPNGIKSLVRPFVFRKYLDYSAYEAMRKLHRQISS
                     EVSKKGMADNIKLGAGGIREVEFIAQIFQMIRGGQMRALQLKGTQETLKKLAETGIMP
                     SENVETLLAAYRFLRDVEHRLQYWDDQQTQTLPASPEQQQLLAESMGFDSYAAFSDDL
                     NAHRTKVNQLFNEILSEPEEQTLDTSEWQWAWQEKPDEEERQGRLKEHGFDAETIAAR
                     LDQIRNGHKYRHLSAHAQLRFDAVVPLFVQAAAEQSNPTDTLMRLLDFLENISRRSAY
                     LAFLNEHPQTLAQLAQIMGQSSWVAAYLNKYPILLDELISAQLLDTAFDWQALAAALS
                     DGIEACGGDTEAQMDALRRFQHAQVFRLAVQDLAGLWTVEPLSDQLSALADTILAAAL
                     PCAWADMPKKHRDTPQFAIVGYGKLGGKELGYASDLDLVYLYDDPHPDAGDVYSRLAR
                     RLTNWLSTATGAGSLYETDLRLRPNGDAGFLAHSIAAFEKYQRENAWTWEHQSLTRAR
                     FICGTPEIQTAFDRIRTEMLTAERDQTVLAGEIIEMRERMFPTHPPVDSNVKYAHGGV
                     VDVEFIVQYLILAHARKYPQLLDNYGNIALLNIAADCGLIDKTLAGQSRTAYRFYRRQ
                     QHNTKLRDAAKTEVTGELLAHYGNVRKLWREVFGEEAATA"
BASE COUNT         1966 a         2031 c         2111 g         1836 t
ORIGIN      
        1 ctataaaaat gccgtctgaa acggtttcag acggcatttc gatgtcggcg gcggctttgc
       61 ggaatcagcc tttgaagcgt ttgaagacca gcgtgccgtt ggtgccgccg aagccgaagg
      121 agttggaaat ggcaacgtcg atttccgcgt cgcgcgcttc gttggcgcag tagtccaaat
      181 cgcagccggc ttcaacgtct tgttcaaaaa tgttgatggt cggcgggatt ttgccgtcgt
      241 gtatcgccaa aatgctgtac acggcctcca cgccgcccgc cgcgccgagc aggtggccgg
      301 tcatggattt ggtcgagctg acgacggttt tgtaggcgtg ttcgccgaac gcgcgtttga
      361 gggctttggt ttcgttggca tcgcccaagg gggtggacgt gccgtgcgcg ttgacgtaat
      421 ccacgtcttc gggattgatg ccggcatctt tcagcgcgcg ggtaacggca agggcggggc
      481 cttcttcgtt cggcgcggtg atatggtaag catcggaact catgccgaag ccgacgattt
      541 cggcgtagat tttcgcgccg cgttttttgg cgtgttccaa ttcttccaac accaatatgc
      601 ccgcgccttc gccgataacg aagccgtcgc ggcctttgtc ccacggacgg gaagcggtgg
      661 cggggtcgtc gttgcgggtg gagagggctt tcatcgcggc aaaaccgccc acgcccaaag
      721 tgctgattgc gccttccgcg ccgccggcaa ccattatgtc cgcgtcgccg tatttgatca
      781 gtcgggcgga attgccgatg gcgtgcgcgc cggtggtaca ggcggaaacc atcccgtagc
      841 tcgggccgcg gtagcctttg agaatggtaa cgtgtccgga aatcaggttg atcagcgaac
      901 cggggataaa gaaagggttg attttgcgcg cgccgccttc gattacggct ttgccggtga
      961 cctcgatgct gggcagtccg ccgatgccgg aaccgatgtt cacgccgatg cggtctttgt
     1021 cgaggttttc cacatcgtcc aagcccgaat cggcgattgc ctgcaatgcg gcggcaatgc
     1081 cgtagtggat gaatacgtcc atccggcgcg cttctttcgc gctgatgtat tgtccgatgt
     1141 caaaaccgcg cacttcgccg gcgacacggc tgttgatgtc ggatgcgtca aagcgggtaa
     1201 tcgcgccgat gccgcttttg ccggcgagca gggtgtccca agcctctgcg acagtgttgc
     1261 cgacagggga aacctgacct aagcctgtaa tgactactct tctctgactc atgataacct
     1321 cgctgttggt tgtcggaatg ggggcatatg cggctgtcgt gcagatgccg tctgtaattt
     1381 tcggcagggg ttcaaacagt ttgccatata agggaaaagc ctctattgcg cggtgcagca
     1441 gaggctgttg tgtcgggcga cgaccggtta gccgttgtgg gcattgatgt agtcgatagc
     1501 cagttggacg gtggtgattt tttcggcatc ttcgtcgggg atttcgcagc cgaatgcttc
     1561 ttccaaagcc ataaccagct ccacggtgtc caaagaatcc gcgcccaagt cgtcttggaa
     1621 agaagattcg tttttcacgt cggcttcgtt tacgcccagt tgttcagcaa caattttttt
     1681 aacttgttgt tcgatgtttg acatatcagt cgttccttta tgccttgcgg caggttgttt
     1741 aagggaaata aatcggtggt attgtaccga cttttaatag agttttctat ctaatgacta
     1801 ttatatcaat atttgccgat ttgtacattt ttgggtgcgg cgggttttgt cgttcaagtt
     1861 tgacctgtgt gccgtatgtt tgacgggatt tcggttaaaa tgacggcatt tccatctgaa
     1921 gcagaaagcc ctgtcatgta tccacttgcc cgccgtatcc tgtttgcact cgatgccgag
     1981 aaagcccacc acttcacgct cgacgcgctc aacatggttt ataaattggg tctgattccc
     2041 gtaaccggca accgtaccaa acctgtaaaa ctgatgggtt tggatttgcc caaccctgtc
     2101 gggcttgccg ccggactcga taaaaacggc gaatatatag acgcattggg cgcgctcggc
     2161 ttcggtttca tcgaaatcgg cacggtaacg cccaacccgc agcccggcaa cccgcagccg
     2221 cgcctcttcc gcgttcccga atatcaaggc atcatcaacc gcatgggctt caacaaccac
     2281 ggcatcgatg ccatgattca aaacatcgaa aaaagtaaat tcagcggcgt attgggcatc
     2341 aacatcggca aaaacgctgt aacaccgatt gaaaacgctg ccgatgatta tttaatctgc
     2401 ctcgaaaaag cctacgcaca cgcaagttac attaccgtca atatttcctc gcccaacact
     2461 aaaaacctcc gcgcgctgca aggcggcgac gagttgagcg cattgcttga ggctttgaaa
     2521 aacaaacagg cacagcttgc ctctgtacac gggaaatacg tcccgctcgc cgtcaaaatc
     2581 gcccccgatt tggatgaagc acaaattgaa gacatcgccc acgttgtcaa atccgtcgaa
     2641 atggacggca tcatcgctac caataccacc atcgacaaat caagcctcgg tagccatccg
     2701 ctcgcaggcg agcagggcgg tttgagcggg ctgcccgttc atgaaaaaag taatcgggtg
     2761 ttgaagctgt tggcagacca catagacggc aagctgccga ttatcggcgt aggcggcatt
     2821 atggaaggcg aggatgcggc agagaaaatc cgcttgggcg cgaccgccgt ccaagtgtac
     2881 agcggattga tatacaaagg tccggcattg gtcaaagaat gtttgaaggc tttggcgcga
     2941 tgacgcgtcc cgcccaaaat gccgtctaaa cgcacgtttt gccgttcaga cggcattttc
     3001 atttcctttt tccgcctgcc gccccttgaa aatcccttac gcgccgccct gtttgaaata
     3061 aggcaaacgc ccgccgcgaa ccggacaatc ttgatacgca gccaaagcaa gtccggcggt
     3121 aagttgttaa atatataagc aattgataca aaaaataatt ttatactgtg gcggacggct
     3181 tgggaaaacg caaaatatga acggcgttga aattcatgat gtggaaaata aggatacggc
     3241 ggataatcaa aagattttat atttaaggat ttgatatgtt taaggacgaa ctaaatgaat
     3301 ttatccgatt gatatccgat ccggaaagtg aattggatga atggtatttg agtgatttta
     3361 aagatgaaca tatatgggaa atgcaaagtt acgaagcatt ttcatgtttg cgggaagcag
     3421 tcccctattt gtttgcttat ccccgatacg gatatgaact gttggagata atttccgcgt
     3481 taaaagaaac atctgatacg acagaattat tttatgagcc gggtatcgtg cctttgctga
     3541 ttgatttata taaagaagat agttatctgg taaatatggt caaacggata ttcaaatgat
     3601 gaaaggggcg cgggcgtttg cttggcggaa ggcaggtaac tcaatttgaa ggacgcggaa
     3661 gccgatacgt taaaaaggat gaaaaatgga aaacgggcaa cggaataacc ggtttccttt
     3721 ggaaaaacga attttttatc tggagcattc ggggcggtat ctgatgattt gcgccttatc
     3781 ggattattcc caaaacaaac atactgtcgt tatggcaaat ttcatctatc cggatgaaaa
     3841 aacggattgg cggaatttgg atgatttatt caatgagttg gttttagagg aattgcaggc
     3901 ttcatttatg gattggcatc cgactgttga agaggcaatc agccgtcatt tggaagactt
     3961 ttcgtaacag gcgtcaatcg gaaggggcgg aatgacgggg caggcaatcg gagtaaaaaa
     4021 tgaaccttga tttaaccgcg caaaaagtcc gtctttcttg gaaggatatt ctgtgggggt
     4081 atgggaataa atacttgggt tgggctgatg tggcagctta tgcccgaaaa atgacgcttt
     4141 cagatcatga tgaacgtgtg ttcaaactat ctttaatcaa caaatccaat attcttgaat
     4201 taaagcctgt tctggaagat ttggcttcgg aaatgaggga ttattcccct aaaaattggc
     4261 tgtacgtcct cttaagcgat gtattccata gaaaagaaga atttgaggat cctttggggg
     4321 aagttgaaaa aatttatgca gattttgatt atccggaaga aatagaatca tttgtcaggt
     4381 atatgccgcc caaagacggt tatattcctt ctgcccacac ctatgaagaa aatattgccc
     4441 ggttatattc tcactgggaa cactatttga acaacggcgg agggcagggt taaaaccggc
     4501 aatccgatgc cgtctgaagc attatccggc cttcagacgg cattttgttt tccgacagtt
     4561 tataaactgt cgttgtttct tgacagaaac aacgacctta tttgaaacga ttggaggaca
     4621 tgattatggg tttttgggat agcgcggcaa atttggcaaa agaagcagga gaaggcgtaa
     4681 agcgatttaa cgagagaagc cgtaaattgc agaacgaata tcagcaggaa tccagtgaaa
     4741 aattacgccg cgtcgtaaac agcgaaggtt ttttcggtaa ttcggcacaa gaaaaagcca
     4801 ttgcccgcaa agttctgaaa gaacgtggcg aaggctaaac gagggcagcg catttgccgc
     4861 tgttttttta tcggtaggta tccgtccgaa tatcggggta aggtttcaga cggcatcgaa
     4921 ggttgctatg atatagtggc ttgactttaa accggtacgg catcccctcg ccctgtcctg
     4981 atttgaagtg aatccgccat catcttcctg ccatccttcc aaacggaatc cgaaatgtcc
     5041 gacaaccgcc tcgacaccgc ccgccgccat tccctgttcc ttgcccgcca gctcgacaac
     5101 ggcaaactca agcccgaaat attcctgccg atgttggaca aggttttgac cgaagcggat
     5161 ttccaagcct ttgccgactg ggacaaaatc cgtgcggaag aaaacgagga agaattggcg
     5221 cggcagttgc gcgggttgcg ccgttatgtg gtgtcgcaga ttatcgtgcg cgatatcaac
     5281 cgcatcagcg atttgaacga agtaacccgc acgattacgc tgtttgccga ttttgccgtc
     5341 aataccgcgc tggattttgc ctacgcctat tatcgggaca tgtacggcac gccgatcggg
     5401 cgttatacca aatcgccgca gcatttgagc gtggtggcga tgggcaaggc gggcggctat
     5461 gagttgaacg tgtcttccga catcgatttg attttcacct atcccgaatc gggcgacacc
     5521 gacggcaggc gcgaacgggg gaatcaggag ttttttacca aagtcgggca gaaactgatt
     5581 gcgctgttga acgacatcac cgccgacgga caggtgttcc gcgtcgatat gcggctgcgg
     5641 ccggacggtg attcgggcgc gttggtattg agcgaaaccg cgctggagca atatttgatt
     5701 acgcaggggc gcgaatggga acgctacgcg tggtgcaaag gccgcgtggt tacgccgtat
     5761 ccgaacggaa tcaaatcgct ggtgcgccct ttcgtgttcc gcaaatattt ggattacagc
     5821 gcgtatgagg cgatgcgtaa gctgcaccgc caaatcagca gcgaagtcag caaaaaaggc
     5881 atggcggaca acatcaaact cggcgcgggc ggcatccgcg aagtcgaatt tatcgcccag
     5941 attttccaga tgatacgcgg cggccaaatg cgtgcgctgc aactgaaagg cacgcaggaa
     6001 acgctgaaga aacttgccga aaccgggatc atgccgtctg aaaacgtcga aaccctgctt
     6061 gccgcctacc gattcctgcg cgatgtcgaa caccgcctgc aatactggga tgaccagcaa
     6121 acccaaaccc tgccggcttc gcccgaacag cagcaactgc ttgccgaaag tatgggtttc
     6181 gacagctacg ccgctttttc agacgacctc aatgcccacc gcaccaaagt caatcagttg
     6241 ttcaacgaaa ttttgagcga acccgaagag caaaccctag acaccagcga atggcaatgg
     6301 gcatggcagg aaaagcccga cgaagaagag cggcaaggtc gtctgaaaga acacgggttc
     6361 gatgccgaaa ccatcgccgc aaggctcgac caaatccgaa acggtcataa ataccgccat
     6421 ctctccgcac atgcccagct gcgtttcgat gcggttgtgc cgctgttcgt acaggcggcg
     6481 gcagagcaaa gcaacccgac cgatacattg atgcggctgt tggattttct cgaaaacatc
     6541 agccgccgat ccgcctatct cgccttcctc aacgaacatc cgcaaacctt ggcgcaactg
     6601 gcgcagatta tgggccaaag ttcttgggtg gcggcgtatc tgaacaaata tccgattttg
     6661 ttggacgaac tcatcagcgc gcagcttttg gataccgcgt ttgattggca ggcactcgcc
     6721 gccgcccttt cagacggcat cgaagcctgc ggcggcgata ctgaagcgca aatggacgcc
     6781 ctgcgccgct tccagcacgc ccaagtcttc cgtctcgccg tccaagacct tgccggactg
     6841 tggacggtag aacccctctc cgaccaactc tccgccctcg ccgacaccat actcgccgcc
     6901 gccctgccgt gcgcatgggc ggacatgcca aaaaaacacc gcgacacacc gcaattcgcc
     6961 atcgtcggct acggcaaact cggcggcaaa gaactcggct acgcctccga cctcgacttg
     7021 gtctatcttt atgacgaccc gcatcccgat gcaggcgacg tgtacagccg ccttgcccgc
     7081 cgcctgacta actggctttc caccgccacc ggcgcaggca gcctctacga aaccgacctg
     7141 cgcctgcgcc ccaatggcga tgcaggtttc ctcgcccaca gcatcgccgc ctttgaaaaa
     7201 taccagcgcg aaaacgcatg gacgtgggaa caccaatccc ttacccgcgc ccgttttatc
     7261 tgcggtacgc ccgaaattca gacggccttc gaccgcatcc gtaccgaaat gctgaccgcc
     7321 gaacgcgacc aaacggtttt agcaggcgaa atcatcgaaa tgcgcgaaag aatgttcccc
     7381 acccatccgc cggttgacag caacgtcaaa tacgcgcacg gcggcgtagt agacgtcgaa
     7441 tttatcgtcc aatatctgat acttgcccac gcccgaaaat atccgcaact cctcgacaac
     7501 tacggcaaca tcgccctctt gaacatcgcc gccgactgcg gtttgattga taaaacgctt
     7561 gccggacaaa gccgcaccgc ctaccgcttc taccgccggc agcagcacaa caccaaactg
     7621 cgcgacgcgg caaaaaccga agtaaccggc gaactgttgg cacattacgg caatgtcagg
     7681 aaattgtggc gggaagtgtt cggcgaagaa gcggcaaccg cctgaacaaa aaatgccgtc
     7741 tgaagcctga caatctgggt ttcagacggt attttcgtac cgtgccgttt taaggttgcg
     7801 gcagagctaa agcgatttat cgggaatggc tgaaacccaa aaaccggatt cctctttcgc
     7861 gggaatgacg ggatttcagg cttctgtttt tgtgggaatg atgggatttt ttatccaagc
     7921 aaaaatcaaa acaaacaaat aaga
//
LOCUS       DAXHPV010000091         7907 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.091, whole genome shotgun sequence.
ACCESSION   DAXHPV010000091 DAXHPV010000000
VERSION     DAXHPV010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7907)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7907)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7907
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.091"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(51..2093)
                     /gene="recG"
                     /locus_tag="ACFM6C_001376"
     CDS             complement(51..2093)
                     /gene="recG"
                     /locus_tag="ACFM6C_001376"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HFC6158828.1"
                     /translation="MMSPETRKQLKITDVSAKKLDKLNLHTAWDLVLHLPLRYEDETH
                     IMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQIADGSGSVLFLRFIHFYASHQKQ
                     TAIGKRIRAVGEIKHGFYGDEMIHPKIRDAEGGGLAESLTPVYPTVNGLNQPTLRRII
                     QTALDVTPLHDTLPDALLCRLKLPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKF
                     DELLAQQLSMRLARQKRIGGTAAALGGDGTLTQALRQALPFALTDAQEKVVSEICRDM
                     AQTYPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEILAEQHFIKFKQWLE
                     PLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIAVGTHALFSDGVAFHNLGLTIVDEQH
                     RFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRL
                     VNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQLQTAAETLARLQTALPELNIG
                     LVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVPNAALMVIEHAERMGLAQLH
                     QLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLG
                     ARQSGVPMLRFAKLEEDLHLLEQVREIAPMLIEQNPEIVEAHLARWLSGREGYLGV"
     gene            complement(2179..2622)
                     /gene="secB"
                     /locus_tag="ACFM6C_001377"
     CDS             complement(2179..2622)
                     /gene="secB"
                     /locus_tag="ACFM6C_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HFC6158829.1"
                     /translation="MSEELQPVFSIERLYVKDLSLEVPHAPQIFLEQGEPEVDMRVST
                     GSQKLEDGYYNVDVTVTVTAKLDNERTMFLNEVTQSGIFRLENIPEEDADLLLGVACP
                     NILFPYAREAVSGTVTRAGFPPVLLAPINFEAIYQQQQEAEAAGA"
     gene            complement(2643..2900)
                     /gene="grxC"
                     /locus_tag="ACFM6C_001378"
     CDS             complement(2643..2900)
                     /gene="grxC"
                     /locus_tag="ACFM6C_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 3"
                     /protein_id="HFC6158830.1"
                     /translation="MQTVTMYTGPFCPYCTMAKRLLHAAGVGHIDEIRVDASPEAFAE
                     MQQLSGQRSVPQIFIGETHVGGFTDLYRLQQEGGLDGLLNP"
     gene            3114..4607
                     /gene="rng"
                     /locus_tag="ACFM6C_001379"
     CDS             3114..4607
                     /gene="rng"
                     /locus_tag="ACFM6C_001379"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HFC6158831.1"
                     /translation="MLSGLPIPKDIARPPETILVNITPQETRVAVLEENNICELHIER
                     NSEHSLVGNIYLGVVRRVLPGMQSAFIDIGLERAAFLHIVDVLEQRRNPEETQRIEHM
                     LFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVSQRIEDDAERSSL
                     RERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQAKIRPPETLLY
                     QDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELFKGERPLFE
                     THNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETIFRTNLE
                     ACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGFTSLG
                     LVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESFRI
                     LAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDIVLM"
     gene            complement(4642..5904)
                     /locus_tag="ACFM6C_001380"
     CDS             complement(4642..5904)
                     /locus_tag="ACFM6C_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFC6158832.1"
                     /translation="MFVPLAMLAGMFSYYETFHETFHETEALQDDLLRQAALYVAPDS
                     KPETLPEGDGDTRILVQMPQQEDPVVSLPAHLADGLHTLQADGDDDYYRVYIRTTERG
                     RIAVMQESEYREDLAADAARQSVLPLLAALPLMILLTVWITHKAMRPVRKLSQSLEQR
                     RINDLSALSVDNIPSEIRGFVTAINLLLKRADEDIRHRQRFVADAAHELRTPMTALSL
                     QAERLNNMSLPPDAARQSAVLQQSIRRNKHLLEQLLALARSQSDETPLAKTTFGLQSR
                     FRQVLQELMPLALEKRQDIGVAVGGDVEIFADETEIYTLVKTFVDNAIRYTPSEGRID
                     LGFTDEGKYLAVWVEDNGNGIPESERARVLDPFYRILGTEQQGTGLGLSIADTLAKKY
                     GGHLELTDSRRFGHGLLIRALLDKETLK"
     gene            complement(5900..6074)
                     /locus_tag="ACFM6C_001381"
                     /pseudo
     CDS             complement(5900..6074)
                     /locus_tag="ACFM6C_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692565.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
     gene            complement(6297..7610)
                     /locus_tag="ACFM6C_001382"
     CDS             complement(6297..7610)
                     /locus_tag="ACFM6C_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CitMHS family transporter"
                     /protein_id="HFC6158833.1"
                     /translation="MLTFIGLLIIGVIVWLLLTEKVSPIIALILVPLFGALLAGFDVS
                     QLKEFYSGGTKSVMQIVIMFMFSILFFGIMNDVGLFRPMIGGLIKLTRGNIVAVSVGT
                     VLVSVVAQLDGAGATTFLLVVPALLPLYKRLHMNPYLLFLLLTSSAGLINLLPWGGPT
                     GRVASVLGADVGELYKPLLTVQIIGVVFILALSLLLGVREKRRIVRELGALPAVADLI
                     KPVPLSEEEQKLARPKLFWWNVLLFLAAMSLLFSGIFPPGYVFMLAATAALLLNYRSP
                     QEQMERIYAHAGGAVMMASIILAAGTFLGILKGAGMLDAISKDIVHILPDALLPYLHI
                     AIGVLGIPLELVLSTDAYYFGLFPIVEQITSQAGVAPEAAGYAMLIGSIVGTFVTPLS
                     PALWMGLGLAKLSMGKHIRYSFFWAWGLSLAILASSIAAGIVPLP"
     gene            complement(7715..>7907)
                     /locus_tag="ACFM6C_001383"
     CDS             complement(7715..>7907)
                     /locus_tag="ACFM6C_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158834.1"
                     /translation="IPRVQHAPRSAMIGAVSFESAHRDECPRAVPIPICRLFRIGCRR
                     EMTDGCRNGGRREWEEMTD"
BASE COUNT         1867 a         2336 c         2050 g         1654 t
ORIGIN      
        1 aaatcagatt tccgttacac ttttttccaa tatttcagac ggcattttgc tcacacgccc
       61 aaataccctt ccctgccgga aagccacctt gccaaatgcg cttcgacgat ttcggggttt
      121 tgctcaatca gcatcggggc gatttcgcgc acttgttcca aaaggtgtaa gtcttcttca
      181 agcttggcga agcgcagcat aggcacgccg ctttggcgcg cgccgagaaa ttcgccgggg
      241 ccgcggatat tgaggtcttg gcgggcgatt tcaaagccgt cggtgtgttc gtaaatcact
      301 ttcaaccgcg ctttggcgag ttcgcccaag ggttcggcaa acaggaggac gcacacgctt
      361 tctgccgcgc cgcgcccgac ccgaccgcgt aattggtgca gctgcgccaa gcccatgcgc
      421 tcggcgtgtt cgatgaccat cagggcggca ttgggcacat ctacgccgac ttcgatgacg
      481 gtggtggcga ccaagacgtt cagccccccc gaagaaaacc gcgccatcac ttcggccttt
      541 tcggcggcct tcatgcgccc gtgtaccagt ccgatattga gttcgggcaa tgccgtctga
      601 agccgggcga gggtttcggc ggcggtttgc agttgcaggg tttcgctttc ttcaatcaat
      661 gggcagaccc aatacgcctg ccgccctttt cggcaagtgc cgaggacgaa gccttcgact
      721 tcggcacggc ggacgttgtt gacgaggcgc gttttaatcg gtgtgcgccc gggcggcaat
      781 tcgtcgatga cggacacgtc caaatcggcg aaaaaactca tcgcaagcgt gcgcgggatg
      841 ggcgtggcgg acatcatcag ctgatggact tcgcgccctt tgtttttgag ggcgaggcgt
      901 tgggcaacgc cgaaacggtg ctgttcgtcc acaatggtca agcccaaatt gtgaaacgcc
      961 acgccgtctg aaaacagggc gtgcgtgccg acggcgattt tgacgctgcc gtcagccagt
     1021 ttggctttgg cttcgtcttt ggctttttta cgcaaactgc caaaaaggcg gacaacttca
     1081 atgcccaaag gttcgagcca ttgtttaaat ttaataaaat gctgttcggc aaggatttca
     1141 gtgggcgcca ttacagccac ctgcgcaccg gattcgatag ccgtcaaagc agacaaagca
     1201 gccacaatgg ttttgccgct gccgacatcg ccctgcagca ggcggtgcat cgggtaggtt
     1261 tgcgccatat cgcggcagat ttcggaaaca actttttctt gcgcatcggt cagggcaaac
     1321 ggcagggctt ggcgcagggc ttgggtcaat gtgccgtcgc cgcccaatgc cgccgccgtg
     1381 ccgccgatac gcttctgtcg cgccaagcgc atcgaaagct gttgcgccaa aagttcgtcg
     1441 aatttgagcc gttgccatgc aggcagcgtg ccgtctgaaa gctgatgaat cgtgaaactc
     1501 ggcggcggcg aatgcaaaag acgcaggctt tcggcgaggt gtggcagctt cagacggcac
     1561 agcagggcat cgggcagcgt gtcgtgcagc ggcgtaacgt ccaacgccgt ctgaataata
     1621 cggcgcaaag tgggctggtt caaaccgttt acggtcgggt aaaccggcgt gaggctttcc
     1681 gccaaaccgc cgccctcggc atcgcggatt ttgggatgaa tcatctcgtc gccgtaaaag
     1741 ccgtgtttga tttcgcccac ggcgcggatg cgtttgccga tcgccgtctg tttctgatgg
     1801 ctggcgtaaa agtggatgaa gcgcagaaaa aggacgctgc cggagccgtc ggcgatttgg
     1861 acaatcagct gcttgcgcgg tttgaacgtt acttcctgat ggataacctc cccctcgacc
     1921 tgacacggca cgccaatcgg cgcgtcctta atcggcataa tgtgcgtctc gtcctcgtaa
     1981 cgcagcggca ggtgcaacac caaatcccac gcggtatgga ggttgagttt gtcgagcttc
     2041 ttggcggaaa catcggtgat tttgagctgt tttcgggttt cgggcgacat cataggcaga
     2101 ttcctttgga cgcgcctatt ttatccgaaa acaaaaatgc cgtctgaaac ggattcagac
     2161 ggcatcgaca ggcaggaatc aagctccggc ggcttcggct tcctgctgtt gttggtaaat
     2221 cgcctcaaaa ttaatcggcg cgagcaggac gggcgggaag ccggcgcgcg ttaccgtacc
     2281 ggaaacggct tcgcgcgcgt aagggaagag gatgttcgga cacgccacgc cgagcagcag
     2341 gtcggcatct tcttcgggga tgttttccaa acggaaaata ccgctttggg ttacttcgtt
     2401 caaaaacatc gtgcgctcgt tatccaattt ggcggttacg gtaacggtta catccacgtt
     2461 gtagtagccg tcttccagct tttggctgcc ggtggaaacg cgcatatcca cttcgggctc
     2521 gccctgttcc aaaaagattt gcggcgcgtg cggcacttcc aaagacaagt ctttgacata
     2581 cagtcgctcg atgctgaata cgggttgcag ttcttcgctc attttgtttt cctagttggg
     2641 ggttaagggt tcagcagtcc gtccagcccg ccttcctgct ggaggcggta gaggtcggta
     2701 aatccgccga cgtgcgtttc gccgatgaaa atctgcggca cgctgcgctg tccggaaagc
     2761 tgctgcattt cggcaaaggc ttcgggactt gcatcgacac ggatttcgtc gatatgtccg
     2821 acacctgccg cgtgcagcag ccttttcgcc atcgtgcagt aggggcaaaa cggacctgtg
     2881 tacatggtaa cggtctgcat attgggtttc cgaaagtttt gcaatgataa tcaatatagg
     2941 ggcatttccc ccgtttggca agtgcggaac agatgcacgt tcaaacggca tgtgcggaat
     3001 gtgtcaaagt ttctttttta aagtatgata gacattgtga aaaatatttt tgcacccgcg
     3061 ctgcgcggcg gaacggatgc aaaaatattt ttattacatt ttcaggaaaa accatgttgt
     3121 caggactccc catccccaaa gacatcgcgc gcccgcccga aacgatattg gtcaacatca
     3181 cgccgcagga aacgcgcgta gcggtgttgg aggaaaacaa tatctgcgag ctgcacatcg
     3241 agcgcaacag cgaacacagc ctagtcggca atatctattt gggcgtggtg cgccgcgtgc
     3301 tgcctgggat gcagagcgcg tttatcgaca tcggcttgga acgcgcggcg tttttacaca
     3361 tcgtcgatgt cctcgaacaa cgccgcaacc ccgaagaaac ccagcgcatc gaacatatgc
     3421 tgtttgaagg gcagtctgtt ttggtgcagg tcatcaaaga cccgatcaac accaaaggcg
     3481 cgcggctttc cacccaaatc tcgctggcgg ggcgtttcct cgtccatctt ccgcaagaag
     3541 accacatcgg cgtgtcccaa cgcatcgaag acgatgccga acgcagcagc ctgcgcgaac
     3601 gcctcgacaa gctcctgccg gaaaatgcct gccggggcta catcatccgc accaacgccg
     3661 aaaacgccac cgacgaacag ctccagtccg acatcgacta cctgaccaaa gtgtgggaac
     3721 acatccaaga acaggcgaaa atccggccgc cggaaaccct gctttatcag gatttgccct
     3781 tgagtttgcg cgtgttgcgc gatatggtcg gctgcgacac gcaaaaaatc ctcgtcgatt
     3841 ccaccgtaaa ccacggccgc atgacgcgtt ttgccgaaca atacgtccac ggcgcattgg
     3901 gcaggataga attgttcaaa ggcgaacgcc cgctatttga aacccacaac gtcgaacagg
     3961 aaatcagccg cgccctgcaa ccgcgcgtca acctcaactt cggcagctac ctgattatcg
     4021 aatccaccga agcgatgacc acgatagacg tgaacacagg cggcttcgtc ggcgcacgca
     4081 atttcgatga aacgattttc cgcaccaacc tcgaagcctg ccacaccatc gcccgcgaat
     4141 tgaggctgcg caacctcggc ggcatcatca tcatcgactt catcgatatg gcgcaggaaa
     4201 gccaccgcga agccgtgttg caggagcttg ccaaagccct cgccttcgac cgtacccgcg
     4261 ttaccctgca cggttttacc agcctgggac tggtcgagct gacgcgcaaa cgctcgcgcg
     4321 aaaacttaaa ccaagtcctc tgcgaaccct gcccttcctg ccaaggcaga ggccgtctga
     4381 aaacgccgca aaccgtgtgc tacgaaatcc agcgcgaaat cgtccgcgaa gcgcgccgtt
     4441 acgatgccga aagtttccgc atcctcgccg cccccaacgt catcgatttg tttttggacg
     4501 aagaatcgca atccttggca atgctgatag atttcatcgg caaaccgatt tctctggcgg
     4561 tcgaaaccgc ttacacgcag gaacaatacg atatagtgct gatgtaaaaa atgccgtctg
     4621 aagccttcag acggcatctg tctatttcag ggtttccttg tccaacaacg cccgtatcaa
     4681 cagaccgtgt ccgaaacgtc ggctgtcggt cagttccaaa tgtccgccgt attttttggc
     4741 aagcgtgtcg gcgatggaca gacccagccc cgtcccctgc tgctccgttc ccaaaatacg
     4801 gtaaaacgga tcgaggacgc gggcgcgttc ggattcggga atgccgttcc cgttatcttc
     4861 cacccacacg gcaagatatt tcccttcgtc tgtgaaaccc aaatctatcc tgccttcgga
     4921 cggggtataa cgtattgcgt tatcaacaaa cgttttaacc aaggtataga tttcagtttc
     4981 atcggcaaat atttcgacat cacctccgac cgccacacca atgtcctgac gtttttccaa
     5041 ggcaagcggc atcagttcct gcaacacttg gcggaaacgg ctttgcagac cgaatgtcgt
     5101 tttcgccaaa ggggtttcgt ccgactgcga acgcgccagt gccaaaagct gctcgagcag
     5161 gtgtttgttg cgccgtatgc tttgctgcaa aacggcagac tgccgcgccg catcgggtgg
     5221 cagagacata ttgttgagcc gttccgcctg aagggaaagg gctgtcatcg gcgtacgcaa
     5281 ttcgtgtgcc gcgtcggcga caaaccgctg acggtggcgg atgtcttcat ccgcacgttt
     5341 caaaagcaag ttgatggcgg ttacgaaccc tctgatttca ctgggaatat tgtccacact
     5401 caaggcagac aggtcattga ttcggcgttg ttcgagactt tgcgacaatt tgcggacggg
     5461 gcgcatggct ttgtgcgtaa tccacacggt cagcagtatc atcagcggca gtgccgccag
     5521 caggggcaac acgctttgcc gtgccgcatc cgccgccaaa tcttcccggt attcgctttc
     5581 ctgcatcacg gcaatccgcc cccgctccgt cgtgcggata tagacgcggt aataatcgtc
     5641 gtccccgtcc gcctgaagcg tgtgcagacc gtccgccaga tgcgcaggca ggctgacaac
     5701 agggtcttcc tgctgcggca tctgtaccaa aatacgcgta tcgccgtcgc cctcgggcaa
     5761 agtttcgggt ttggaatcgg gggcgacgta caatgccgcc tgacggagca ggtcgtcctg
     5821 caacgcttcc gtttcgtgga aggtttcgtg gaaggtttcg tagtaggaaa acatacctgc
     5881 aagcattgcc agcggaacaa acatccaaac cgtccgcccc ggcaaaccca aatccagcag
     5941 catcaagtca taaggctggg cagcggcagc cgcgcgccgt ttttgaccca atccaccgca
     6001 tagccgccgt ctttcaaact tgccgacacc gcctccgcaa tcatcgcatc gtcttccacc
     6061 agcaaaacac gcatcaactt tccctttcag acaaaccgtg cctattctaa caccccaaaa
     6121 ttagccgcaa tttagcggcc tttacgcttg ccggtatttt tcaaaactgc agcacaaaaa
     6181 aaccgcgccg gcaactgcct tcagacggca ttggggcgcg attgcaacac acgggcaggc
     6241 aggcagagcc tgcgacagac cacaggaacg attcgggctt cagacggctt cgccgtttac
     6301 ggcagaggca cgattcctgc cgctatcgaa ctggccaata tcgccagcga caaaccccac
     6361 gcccaaaaaa acgaataacg gatgtgtttg cccatcgaca atttcgccaa acccaagccc
     6421 atccacaaag ccggcgaaag cggcgtaaca aaagtgccga cgatactgcc gatcaacatc
     6481 gcataacctg ctgcttcggg cgccacgccc gcctgcgagg taatctgctc cacaatcgga
     6541 aacagtccga aataataagc gtccgtactc aaaaccaact caagcggaat gcccaacaca
     6601 ccgatggcaa tatgcagata aggcagcagc gcgtccggca ggatatgcac aatgtctttg
     6661 gaaatcgcgt ccaacatccc cgcacccttc aaaatcccca aaaacgtacc tgccgccaaa
     6721 ataatggacg ccatcatcac cgcgccgccg gcgtgggcat aaatccgctc catctgttcc
     6781 tgcgggctgc ggtaattcaa aagcaacgcc gccgttgcag ccagcataaa tacataaccc
     6841 ggcgggaaga tgcccgaaaa aagcaggctc atcgccgcca aaaacagcag gacattccac
     6901 caaaacagtt tcggacgcgc caatttttgt tcttcttccg acaaaggcac cggctttatc
     6961 aaatccgcca cggcgggcaa cgcgcccaac tcccggacaa tccgcctttt ttcacgcaca
     7021 cccaaaagca gggacagcgc aaggataaac actacaccga taatttgcac cgtcaacaaa
     7081 ggtttataca attcgcccac atctgcgccc aacacgcttg caacccgccc ggtcggcccg
     7141 ccccacggca gaaggttaat caatcccgca ctggaagtca gcagcaaaaa cagcaggtaa
     7201 ggattcatat gcagacgctt gtaaagcggc aaaagggcgg ggacgaccaa taaaaacgtc
     7261 gtcgcacccg ccccgtccaa ctgcgccacc accgacacca agaccgtccc cacactcact
     7321 gccacgatat taccccgagt cagcttaatc aaaccgccta tcatcggacg gaacagcccc
     7381 acatcgttca tgattccaaa aaacaaaatg gaaaacataa acataatcac aatctgcatc
     7441 accgatttgg tgccgcccga ataaaattct tttaattggg atacatcaaa ccccgccagc
     7501 aacgccccaa acagcggcac caagattaat gcgatgatgg gcgacacttt ttccgtcagc
     7561 agcagccata cgatgacccc gataatcagc agtccgataa acgtcagcat catttctcct
     7621 ttattttatt ttaaacagaa aaccgaccgt gcaggcaaaa ccgcccacag acgcgggata
     7681 agccttgcat tctacttttt tattttgaaa caagtcaatc ggtcatttcc tcccattcac
     7741 gcctgccgcc attcctgcat ccgtccgtca tttcacggcg gcaaccgata cggaacaacc
     7801 ggcaaatcgg tatcgggacg gcgcgggggc attcatcccg gtgcgccgat tcaaacgaaa
     7861 ccgcccctat cattgcggag cgcggggcat gctgtacacg cgggatt
//
LOCUS       DAXHPV010000092         7887 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.092, whole genome shotgun sequence.
ACCESSION   DAXHPV010000092 DAXHPV010000000
VERSION     DAXHPV010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7887)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7887)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7887
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.092"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..110)
                     /locus_tag="ACFM6C_001384"
     CDS             complement(<1..110)
                     /locus_tag="ACFM6C_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HFC6158835.1"
                     /translation="MNTNQPAVYDPLTRALHWLTVAGFIGILTTIVLWTI"
     gene            388..1542
                     /gene="obgE"
                     /locus_tag="ACFM6C_001385"
     CDS             388..1542
                     /gene="obgE"
                     /locus_tag="ACFM6C_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HFC6158836.1"
                     /translation="MKFIDEAKIEVAAGKGGNGATSFRREKFVPRGGPDGGDGGKGGS
                     VWAEADENTNTLVEYRFVKRYQAKNGEKGHGSDRYGAGADDIVLKMPVGTLIRDLDTD
                     EIVADLTYHGQRVCLAKGGKGGLGNIHFKSSVNRAPKQSTPGEEGEARSLQLELKVLA
                     DVGLLGMPNAGKSTLITAVSAARPKIANYPFTTLHPNLGVVRIDENHSFVMADIPGLI
                     EGAAEGAGLGHRFLKHLSRTGLLLHVVDLAPFDETVNPAEEALAIINELRKYDEELYG
                     KPRWLVLNKLDMLDEEEAQTRTAAFLEAVGWDYPKPDDRFQFDMETPRLFQISALTHQ
                     GTQELVHQINQYLTEKKRIEAEKAEAEKAAANVEIIEQQPKTDTGVFKPE"
     gene            1625..2674
                     /locus_tag="ACFM6C_001386"
     CDS             1625..2674
                     /locus_tag="ACFM6C_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFC6158837.1"
                     /translation="MSSNQYIQSLELTNFTVLPNDTFEFSENLNVIVAENGCGKTHLL
                     KILYSLLEVTSNTKNRLLKTELQKSFADKLLNVFRPDSLGRLSKRLQGRGRTEIVLKL
                     QNGTTHSSLNFSSNSSSQVNVQSIGLKENEYTPTPIFLPSRELITLCPWFTSLYQNQS
                     IPFEETWFDTCMQLNHPLAKGPRETKIRELLEPIENAMGGKVSEEQGRFYLSLTNTGG
                     KIEAPLVAEGLRKFVMIARLIATGALLDKGYLFWDEPEANLNPKLIKVAARIIWSLSQ
                     QGIQVFIATHSLFLLRELELLKLENNTDLPVRFFSLIASDDGTKVEQGNSINDLNTLI
                     LLDENIMQADRYLNI"
     gene            3362..4783
                     /gene="cysS"
                     /locus_tag="ACFM6C_001387"
     CDS             3362..4783
                     /gene="cysS"
                     /locus_tag="ACFM6C_001387"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HFC6158838.1"
                     /translation="MTTIYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVM
                     VVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADA
                     LGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFSAYGQLSGKSL
                     DDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFG
                     DTFDIHGGGADLQFPHHENEIAQSVGASGHTCGHDHAQTHHGQSIASHVKYWLHNGFI
                     RVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTR
                     LYTTLKNTPAAAFDLSENANDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQL
                     AGCLKALGGIIGLLQRDPTEFLQGGAASDGLSNEEIEDLIARRKQARADKNWAESDRI
                     RDLLNEHKIILEDNAGGTTWRRG"
     gene            4866..5645
                     /locus_tag="ACFM6C_001388"
     CDS             4866..5645
                     /locus_tag="ACFM6C_001388"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HFC6158839.1"
                     /translation="MLKIISANVNGIRSAYKKGFYEYIAASGADIVCVQELKAQEADL
                     SADMKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFDR
                     LSVISLYLPSGSSAEERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLK
                     NWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVPGYTWWSNRGQAYAKDVGW
                     RIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVMEYDYAAE"
     gene            5632..5976
                     /locus_tag="ACFM6C_001389"
     CDS             5632..5976
                     /locus_tag="ACFM6C_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158840.1"
                     /translation="MLPNKVLGKYDWNVDGKTGIGAAWVVAAFILPILVWAIFMLSRM
                     QGWLAPTKANPTWALVWLLICMPCLLIASKCLGWKGWRRVVNIFACLTVCAILSVPAS
                     LLIAFTLRDLLK"
     gene            5987..6517
                     /locus_tag="ACFM6C_001390"
     CDS             5987..6517
                     /locus_tag="ACFM6C_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HFC6158841.1"
                     /translation="MQGFELEDLTLWLIRDAGEDQMWIDRWAISYPVVQMSEASAGQS
                     IGEWQAGLRTAFERIRGKYVAVVAHGAGAAAFLAWLYQADILTRKKIANIILVPQRPD
                     IFPDDAEHTFQRVRCPCRAALVVSEHGDVPRDWAQKQADTWNARLLVSPHSGSLNGML
                     GGWQWGMKLMQEMLLA"
     gene            complement(6746..7861)
                     /gene="asd"
                     /locus_tag="ACFM6C_001391"
     CDS             complement(6746..7861)
                     /gene="asd"
                     /locus_tag="ACFM6C_001391"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HFC6158842.1"
                     /translation="MKVGFVGWRGMVGSVLMQRMKEENDFAHIPEAFFFTTSNVGGAA
                     PDFGQAAKTLLDANNVAELAKMDIIVTCQGGDYTKSVFQALRDSGWNGYWVDAASSLR
                     MKDDAIIVLDPVNRNVIDNGLKNGVKNYIGGNCTVSLMLMALGGLFQNDLVEWATSMT
                     YQAASGAGAKNMRELISGMGAVHAQVADELADPAGSILDIDRKVSDFLRSEDYPKANF
                     GVPLAGSLIPWIDVDLGNGQSKEEWKGGVETNKILGRSDNPTVIDGLCVRVGAMRCHS
                     QAITLKLKKDLPVSEIETILAGANDWVKVIPNEKEASIHELTPAKVTGTLSVPVGRIR
                     KLGMGGEYISAFTVGDQLLWGAAEPLRRVLRIVLGSL"
BASE COUNT         2075 a         1961 c         2032 g         1819 t
ORIGIN      
        1 taaatcgtcc acaggacaat ggtggtcaga atgccgatga aaccggcaac ggtcagccag
       61 tgcagcgcgc gtgtcaacgg gtcgtaaacg gcaggttggt ttgtgttcat aaaaaactta
      121 ttatatgtaa cggtttgaac ggacattccg tcgggtcgga atgtcaaaaa ggcgcgattg
      181 taccaaagaa gttggacata attttgtttg caggctgaag atttgcttaa aaattcatta
      241 agatgggcgg aacaaatagt ttgggtacgg cgtgttgaaa taccgcttat cccttataat
      301 agcgtccgaa attctgttca gacggcatca aaacacacgg taatccgtct gaacccccca
      361 tttgaaacca acaaacaaga gcattgaatg aaattcatcg acgaagcaaa aatcgaagtc
      421 gccgcaggca aaggcggtaa tggcgcaacc agtttccgcc gcgaaaaatt cgtaccgcgc
      481 ggcggcccgg acggcggcga cggcggcaaa ggcggtagcg tctgggcgga agccgacgaa
      541 aacaccaaca ccctcgtcga ataccgcttc gtcaaacgat accaagccaa aaacggcgaa
      601 aaaggccacg gttccgaccg ttacggcgca ggtgcggacg acatcgtcct caaaatgccc
      661 gtcggcaccc tcatccgcga cctcgacacc gacgaaatcg ttgccgacct cacttaccac
      721 ggacagcgcg tctgcctagc caaaggcggc aaaggcggct tgggcaacat ccacttcaaa
      781 tcctccgtca accgcgcccc aaaacaatcc acgcccggcg aagaaggcga agcccgttcc
      841 ctgcaactcg aactcaaagt cctcgccgat gtcggcttat tgggtatgcc caacgccggc
      901 aaatccaccc tgattaccgc cgtatccgcc gcacgcccca aaatcgccaa ctaccccttc
      961 accaccctgc atccaaactt aggcgtggta cgcatcgacg aaaaccacag cttcgtgatg
     1021 gccgacatcc ccggcctgat tgaaggcgcg gcagaaggcg cgggtttggg gcatcgtttc
     1081 ctcaaacact tatcgcgcac cggattattg ctgcacgtcg tcgatttggc gcccttcgac
     1141 gaaaccgtca accctgccga agaagcactt gctatcatca acgaattgcg caaatacgat
     1201 gaagaacttt acggcaaacc gcgctggctg gtgctgaata aactcgacat gcttgacgaa
     1261 gaagaagccc aaacgcgcac tgccgccttc ctcgaagccg tcggctggga ctaccccaaa
     1321 cccgacgacc gtttccaatt tgacatggaa accccgcgcc tcttccaaat cagcgcgctg
     1381 acccaccaag gcacgcagga attggtacac caaatcaacc aatacctgac cgagaaaaaa
     1441 cgtatcgaag ctgaaaaagc cgaagcggag aaagcagcgg caaatgttga aattatcgaa
     1501 cagcagccta aaacggatac gggcgtgttt aagccggagt gaaaaaagaa agggtttcag
     1561 acgatatttg ttctacaaaa ggttgtttga aacaatttta aagcaagatt gaaatggatt
     1621 aaaaatgtca tctaaccaat atatccagtc gcttgagttg acaaacttta ccgttcttcc
     1681 aaacgatact tttgaatttt ctgaaaatct caatgttatt gttgccgaaa acggttgtgg
     1741 caaaacacat ttgttaaaaa ttttatacag cctgctagaa gtaacatcta acaccaaaaa
     1801 cagattactg aaaacagaat tgcaaaaaag ttttgccgat aaattactga atgttttccg
     1861 tcccgattcc ttgggcaggt tgagcaaacg tttgcagggg cgcgggcgta cggaaatcgt
     1921 tttaaaactg caaaacggca ctacgcatag tagtctgaat ttttccagta actcatcatc
     1981 gcaagtcaat gttcaaagca tcggattgaa agaaaatgaa tatactccga cacctatctt
     2041 cttacccagc cgcgaattaa ttacactttg cccttggttc acttctttgt atcaaaacca
     2101 aagcatccct ttcgaagaaa cttggtttga tacctgtatg caattaaatc acccgcttgc
     2161 caaaggcccc agagaaacaa aaattcgaga attgctcgaa cctattgaga acgcgatggg
     2221 cggaaaagta tctgaagaac aaggaaggtt ttatctatcg ctgacaaata cgggcggtaa
     2281 gattgaagca cctttggtag cagagggttt gcggaaattt gtcatgattg cccggttaat
     2341 cgcaacaggg gcattgctgg ataaaggcta tctattttgg gatgaaccgg aagctaatct
     2401 gaatcctaaa ttgatcaaag tggctgcccg tattatttgg tctttatctc aacagggtat
     2461 tcaggttttt attgcaacac actctctatt cttattgaga gaattggaac ttttgaagct
     2521 tgaaaataac acggatttac ctgtacgttt tttctcgttg attgcttccg atgatggaac
     2581 aaaagtggag caagggaaca gtattaatga tttgaacaca ttgatattgt tagatgaaaa
     2641 cattatgcag gcagacaggt atctgaatat ttgaggttaa gctatgacta caatcacaga
     2701 aaagagatta acctttgctt ttcctgaaga ttattacgtt accaagtatg acgaatggga
     2761 acattataaa atttttcaga acagttgtaa tttacgtaat aaaattgata caaatgaaaa
     2821 gggaaagaac gggataaatc aaagtgtaga tgacgataat ggcagctcag gtgtagatat
     2881 aatagccctt catgagtcga cactttggct aatcgaaatt aaagattatt accgacttgg
     2941 gcttgagcca aatgcccaat caatagatga aaaactttct gacctaccat atttaatcgc
     3001 aagaaaaatt cgagattcat tggcaggatt ggtttctgct aaatttaaag cagaaaaaca
     3061 ggaagaaaaa gatttttctc gcttggcttt agattgtaac gaaataaaaa tagtccttca
     3121 tattgaaatg cctaatataa gaagtaaact ttatccctcg tcatcagatt tagcaaactt
     3181 attaaaagat aagtttaaat tatcagaatt tacaaaaaat tttgcaaact gttatgcaga
     3241 accaattttc acaaatatca accatattaa taatccgcaa ctacgtaatg ttccttggtc
     3301 cgtatctaca ggaacagaac agaaattatc atccgagcaa caaagattaa tccataatcc
     3361 catgaccacc atctacaaca cccttacccg ccaaaaagaa ccctttgccc ccatcgaccc
     3421 tgaaaacgtg cgtatgtacg tttgcggcat gactgtttac gactattgcc acttaggcca
     3481 tgcccgtgtg atggtggtgt tcgacatgat tgcccgttgg ttgcgtgagt gcggttatcc
     3541 gctcacttat gtgcgcaaca tcaccgacat cgacgacaaa atcatcgccc gtgcggctga
     3601 aaacggcgaa accatcggcg aactgaccgc gcgtttcatt caggctatgc acgaagatgc
     3661 cgatgcttta ggtgtgttgc gtccggatat tgagccgaag gcgacggaaa acattccgca
     3721 aatgattgcc atgattgaaa ccctgattca aaacggcaag gcatatcctg ccgcaaacgg
     3781 cgatgtttac tacgccgtgc gcgagttttc cgcttacggc caattgtcgg gcaaatcgtt
     3841 ggacgacctg cgcgcaggcg agcgcgtgga ggtggacggt ttcaaacgcg atccgcttga
     3901 ttttgtgttg tggaaagcgg ccaaagcagg cgagccggca tgggaaagcc cgtggggcaa
     3961 tggccgtccg ggttggcaca ttgaatgctc cgccatgagt gaaaacctgt tcggcgatac
     4021 tttcgacatc cacggcggcg gtgcggattt gcagtttccg caccacgaaa atgaaatcgc
     4081 ccaaagcgtc ggtgccagcg gtcatacctg cggccacgac cacgcgcaaa cccatcacgg
     4141 tcaaagcatc gccagccacg tcaaatactg gctgcacaac ggcttcatcc gcgtggatgg
     4201 cgaaaaaatg tcgaaatcgc tgggcaactt cttcaccatc cgcgaagtat tgaaacaata
     4261 cgaccctgaa gttgtgcgtt tcttcatcct gcgcgcccac taccgcagcc cgttgaacta
     4321 ttccgacgcg catttggacg acgcgaaagg cgcgttgacc cgtctataca ccaccttgaa
     4381 aaacacgcct gccgccgcgt ttgatttgtc tgaaaacgcc aacgactaca cccgccgctt
     4441 ctacgccgcc atgaacgacg atttcggtac ggttgaagcg gttgccgtgt tgtttgagct
     4501 ggcaggcgaa gtgaacaaaa ccaatgacgc acagctcgcc ggctgcctga aagccttggg
     4561 cggcatcatc ggactgctgc aacgcgaccc gaccgagttc ctgcaaggcg gcgcggcttc
     4621 agacggcctc tccaacgaag aaatcgaaga cttgatcgcc cggcggaaac aggcgcgcgc
     4681 cgataaaaac tgggcggaat ccgaccgcat ccgcgacctt ctgaacgaac acaaaatcat
     4741 tttggaagac aacgccggcg gcacgacttg gcggcgcggt taaaatccat cgaaaagggt
     4801 aaatgtgccg cattttgccc ttttttgttc agacggcatt tttattgtga gaacttattt
     4861 ttattatgct taaaatcatt tccgccaacg tcaacggcat ccgctccgcc tacaaaaaag
     4921 gtttttacga atacatcgcc gcatcgggcg cggacattgt ctgcgtgcag gaactcaaag
     4981 cgcaggaggc tgatttgtct gccgatatga aaaatccgca tgggatgcac ggccattggc
     5041 attgcgccga gaagcgcggt tacagcggcg tggcggtgta cagcaaacgc aaacccgaca
     5101 atgtgcaaat cggtatgggc attgaagaat tcgacaggga agggcgattt gtgcgttgcg
     5161 atttcgacag gttgagcgtt atttcgcttt acttgcccag cggcagcagc gcggaagaac
     5221 gccagcaggt gaaataccgt ttccttgatg cgttttaccc tatgctcgaa gcgatgaaaa
     5281 acgaaggacg cgacattgtc gtttgcggcg actggaacat cgcccaccaa aacatcgacc
     5341 tgaaaaactg gaaaggcaat cagaaaaatt caggtttcct gccggaagaa cgcgagtgga
     5401 taggcaaggt tatccacaag ctcggttgga cggatatgtg gcgcacgctt tatcccgatg
     5461 tgccgggcta cacgtggtgg agcaaccgcg ggcaggcgta tgcgaaagat gtcgggtggc
     5521 gcatcgatta tcagatggtt acgcccgaac ttgccgccaa agccgtgtcc gcacacgttt
     5581 ataaagatga aaaattttcc gaccatgcgc cgctggtcat ggagtatgac tatgctgccg
     5641 aataaagttt tgggtaaata tgattggaat gtggacggaa aaacaggaat aggcgcagca
     5701 tgggttgtcg ctgcgtttat cctgcccata ttggtgtggg cgatatttat gttgtcgcgg
     5761 atgcaaggct ggcttgcgcc gaccaaggca aacccgacat gggcgttggt gtggctgctg
     5821 atctgcatgc cctgcctgct gattgcgtcc aaatgtttgg gttggaaagg ctggcggcgg
     5881 gtggtgaata tttttgcctg cctgaccgtc tgcgccatat tgagcgtacc cgcttcgctg
     5941 ctcatcgcct ttaccctccg ggacctgctg aaataggcgg ggcggtatgc agggttttga
     6001 actcgaagat ttgacgcttt ggctgatacg cgatgccgga gaggatcaga tgtggataga
     6061 ccgttgggcg atcagttatc ccgtcgtgca gatgtccgaa gcgtcggccg gtcaaagcat
     6121 aggggaatgg caggcagggc ttcggacggc atttgaacgc atacgtggca aatacgtcgc
     6181 cgttgtcgca cacggtgcgg gcgcggccgc atttttggcg tggctgtatc aggcagacat
     6241 cctgacacgg aagaaaattg ccaacatcat ccttgtaccg cagcgtcccg atatttttcc
     6301 cgacgatgcg gaacacactt tccaacgcgt ccgctgtccc tgccgtgccg cattggtggt
     6361 gtccgaacac ggggatgtgc cgcgagattg ggcgcaaaaa caggcggata cgtggaacgc
     6421 gcgcctgttg gtttccccgc attcgggcag tttgaacggt atgctcggcg gctggcagtg
     6481 gggtatgaag ctgatgcagg aaatgttgct ggcgtgaacg cttgccttat cggaatttcg
     6541 gctgtagcag gaagtccgca tatcgggctg ttttcattga cgtgcaggcg catcaggttc
     6601 ggataaagtc gggctgccgc ataccgccgg aaatggaatc ctttattttt tacgtcggca
     6661 gtgccggcag ggcgttatcc ggcagggttg caaggaaaat gccgtctgaa acaggcttca
     6721 gacggcattt ccattcaaac agggcttaca ggctgcccaa cacgatacgc aatacgcggc
     6781 gcagcggctc ggccgcgccc cacaagagct ggtcgccgac ggtgaacgcg ctgatgtatt
     6841 cgccgcccat gcccagtttg cggatgcgtc cgacagggac ggacagcgtg ccggtaactt
     6901 tggcaggagt cagctcgtgg atgctggctt ctttttcatt ggggatgact ttcacccagt
     6961 cattcgcgcc tgccaaaatc gtttcgattt cggaaacagg caggtctttt ttcaacttca
     7021 gagtgatggc ttggctgtgg cagcgcatcg cgccgacgcg gacgcacagg ccgtcaatca
     7081 cggttggatt gtcgctgcgg ccgaggattt tgttggtttc cacgccgcct ttccattctt
     7141 ctttggactg gccgttgccc aaatccacgt caatccacgg aatcaggctg ccggcgagcg
     7201 gtacgccgaa gttggctttc ggatagtctt cgctgcgcag gaaatcggat actttgcggt
     7261 cgatgtcgag aatcgagccg gcaggatcgg caagttcgtc cgccacttgg gcgtgaaccg
     7321 cgcccatacc gctgatgagt tcgcgcatgt ttttcgcacc tgcgccggaa gcggcttggt
     7381 aggtcatgct ggttgcccat tcgaccaaat cgttttggaa caggccgccc aaagccatca
     7441 gcatcaggga gacggtgcag ttgccgccga tgtagttttt cacgccgttt ttgaggccgt
     7501 tgtcgataac gttgcggttg acagggtcga ggacgataat cgcgtcgtct ttcatgcgca
     7561 gagaagatgc cgcgtcaacc cagtagccgt tccagccgct gtcgcgcagg gcttggaaga
     7621 cggatttggt gtaatcgccg ccttggcagg taacgatgat gtccattttg gcgagttcgg
     7681 caacattgtt ggcatctaat aatgttttag ccgcctgacc gaaatcaggg gctgcgccgc
     7741 cgacgttgga agtggtaaag aaaaacgctt caggaatgtg ggcgaagtcg ttttcttctt
     7801 tcatacgctg catcaaaacc gaaccgacca taccgcgcca gccgacgaaa cctactttca
     7861 ttgtgttgct ccttgaggaa aaatcgt
//
LOCUS       DAXHPV010000093         7681 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.093, whole genome shotgun sequence.
ACCESSION   DAXHPV010000093 DAXHPV010000000
VERSION     DAXHPV010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7681)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7681)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7681
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.093"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(103..2535)
                     /gene="hupB"
                     /locus_tag="ACFM6C_001392"
     CDS             complement(103..2535)
                     /gene="hupB"
                     /locus_tag="ACFM6C_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemoglobin-haptoglobin-utilization protein HupB"
                     /protein_id="HFC6158843.1"
                     /translation="MPIPFKPVLAAAAIAQAFPAFAADPAPQSAQTLNEITVTGTHKT
                     QKLGEEKIRRKTLDKLLVNDEHDLVRYDPGISVVEGGRAGSNGFTIRGVDKDRVAINV
                     DGLAQAESRSSEAFQELFGAYGNFNANRNTSEPENFSEVTITKGADSLKSGSGALGGA
                     VNYQTKSASDYVSEDKPYHLGIKGGSVGKNSQRFSSITASGRLFGLDALLVYTRRFGK
                     ETKNRSTEGDVKIKNAGYIYNPTDVSGPSKWLDYVATGVARSQPDPQEWVNKSTLFKL
                     GYNFNDRNRIGWIFEDSRTDRFTNELSNLWTGTTTSPATGDYRHRQDVSYRRRSGVEY
                     KNELEHGPWDSLKLRYDKQRIDMNTWTWDIPKNYDLRGINGEVYHSFRHIRQNTAQWT
                     ADFEKQLDFSKAVWAAQYGLGGGRGDNANSDYSYFVKLYDPKILTSNQAKITMLIENR
                     SKYKFAYWNNAFHLGGNDRFRLNAGIRYDKNSSSAKDDPKYTTAIRGQIPHLGSERAH
                     AGFSYGTGFDWRFTKHLHLLAKYSTGFRAPTSDETWLLFPHPDFYLKANPNLKAETAK
                     NFELGLAGSGKAGNFKFSGFQTRYRNFIELTYMGVSSDKPNSPNYAPISDGTALVSSP
                     VWQNQNRSSAWVKGLEFNGTWNLDSIGLPQGTHAGVNVSYIKGKAKQTNGQETPINAL
                     SPWSAVYSLGYDAPSKRWGINAYATRTAAKKPSDTVHSNDDLNNPWPYAKHSKAYTLF
                     DLSAYLNIGKQVTLRAAAYNITNKQYYTWESLRSIREFGTVNRVDNKTHAGIQRFTSP
                     GRSYNFTIEAKF"
     gene            complement(2563..3588)
                     /locus_tag="ACFM6C_001393"
     CDS             complement(2563..3588)
                     /locus_tag="ACFM6C_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Slam-dependent surface lipoprotein"
                     /protein_id="HFC6158844.1"
                     /translation="MKYKALSLLPLAAALAACAGGGVAEPHVPVSIPTATPLPTGEVK
                     LSDDNSKIENINTADTGSTSGISIQQRKYEVESYGIKREEKAFIFQTPGGAQYALSSY
                     ADPITVSYSSPDFKIPDRHAGQRLADGSRIFICCSESGATSYAEITKQDYMKFGAWIG
                     PNGEIDLFAGGFPVGKTPKPAYSWSDDTPETAGKGKITYQVWGIRVRNGQFVTSSYTP
                     PKSGYWGPPTNTPVLSFITANFNSNKLAGKILGNSDYGPDVEIKEATINGLTFSGTAT
                     SGGQTGNLDGKFFGKFDSSYSSDTSIGGKITFDGDRSLDTVFGGVSYEKQLEDTTNQD
                     TEHLKKQ"
     gene            3837..5354
                     /locus_tag="ACFM6C_001394"
     CDS             3837..5354
                     /locus_tag="ACFM6C_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="surface lipoprotein assembly modifier"
                     /protein_id="HFC6158845.1"
                     /translation="MLYFRYGFLVVWCAAGVSAAYGADAPAILDDKALSQVWRSVSDK
                     WAESDWKVENDAPRVVDGDFLLAHPKMLEHSLRDALNGNQADLIASLADLYAKLPDYD
                     AVLYGRARALLAKLAGRPAEAVARYRELHGENAADERILLDLAAAEFDDFRLKSAERH
                     FAEAAKLDLPAPVLENVGRFRKKTEGLTGWRFSGGISPAVNRNANNAAPQYCRQNGGR
                     QICSVSRAERAAGLNYEIEAEKLTALADNHYLLFRSNIGGTSYYFSKKSAYDDGFGRA
                     YLGWQYKNARQTAGILPFYQVQLSGSDGFDAKTKRVNNRRLPPYMLAHGVGVQLSHTY
                     RPNPGWQFSVALEHYRQRYREQDRAEYNNGRQDGFYVSLAKRLGESATVFGGWQFVRF
                     VPKRETVGGAVNNAAYRRNGVYAGWAQEWRQLGGLNSRVSASYARRNYKGVAAFSTEA
                     QRNREWNVSLALSHDKLSYKGIVPALNYRFGRTESNVPYAKRRNSEVFVSADWRF"
     gene            complement(5413..7194)
                     /locus_tag="ACFM6C_001395"
     CDS             complement(5413..7194)
                     /locus_tag="ACFM6C_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HFC6158846.1"
                     /translation="MPYFALFDDAVSGRAKRYQNHVESRFFRPEELDALDGALQSGWQ
                     KGLHSVLFADYGFGLPLMGVDSERGGNLAMHWFADCADIDAASWLAQHSDGLPAGIST
                     PQSSVSEADYLDHIRQIHEAIRRGDTYQINYTTRLHLQAYGNPVKLYQRLRQPVPYAV
                     LSHLPDAQGQSAWTLCFSPELFLKIGSDGTISTEPMKGTAPILGDGQDERRAAELQAD
                     PKNRAENVMIVDLLRNDLGKIAQTGTVCVPEPFKVSRFGSVWQMTSTIQAQALPHTSF
                     ADILRAAFPCGSITGAPKKMSMQIIESLEAEARGLYTGSIGYLNPCSGGLGFEGTFNV
                     VIRTLSLTPLSDGIYQGVYGVGSGIVIDSDPAAEYRECGWKARFLNELRPDFGIFETL
                     RVENRQCALLDRHLCRLKTSAQALNLPLPDGCENQIKQYIAHLPDGVFRVKARLASDG
                     ISLSRAVLNRLTDKQRVIISPAVLPAQNYLRRFKTTCRTVFDQAWQTAETQGAFDSLF
                     FNSDGILLEGGRSNVFVKYQGQWLTPSLDLDILNGIMRQAVLDEPQKYLQTNQVIETH
                     ITQKTLQEAEEIRLSNALRGVFAAALA"
BASE COUNT         1546 a         1735 c         2438 g         1962 t
ORIGIN      
        1 tgggcttggt acaagcctga aagggggcgg cggtgcgacc gtaaaaaatg ccgtctgaaa
       61 cccaaatcat cgggtttcag acggcattgg cacatcagga gcttagaact tcgcttcgat
      121 ggtgaaattg tagctcctgc ccggcgaggt aaagcgttgg atgccggcgt gggttttgtt
      181 gtcaacgcgg ttgactgtgc cgaattcgcg gatgctgcgt aaagattccc aagtgtagta
      241 ctgcttgttg gtaatgttgt acgcggcggc gcggagcgta acctgtttgc cgatgttgag
      301 gtaggcggaa aggtcgaaca gcgtataggc cttgctgtgt ttggcataag gccacgggtt
      361 gttcaaatcg tcgttgctgt ggacggtgtc ggacggcttt ttggcggcgg tgcgcgtggc
      421 gtaggcgttg atgccccagc gtttggaagg cgcgtcatag cccaggctgt aaaccgcact
      481 ccatggcgaa agggcgttaa taggggtttc ctgtccgttg gtttgtttgg ccttgccttt
      541 gatgtagctg acattgacac ctgcgtgcgt gccttgcggc aaaccgatgc tgtcgaggtt
      601 ccatgtgccg ttaaattcca aacctttcac ccatgccgag gagcggtttt ggttttgcca
      661 aacgggcgag ctgaccaatg cagtaccgtc ggaaatcggc gcataattag ggctgttagg
      721 cttgtctgag gatacgccca tgtaggtcag ttcgataaaa ttacggtagc gggtttggaa
      781 accggagaat ttaaagtttc ctgctttgcc gctgccggca agtcccagct cgaagttttt
      841 ggcggtttct gccttcaggt tggggtttgc tttaaggtaa aagtcaggat gcgggaacaa
      901 tagccaggtt tcgtccgaag tcggtgcgcg gaagccggtg ctgtattttg ccaacaagtg
      961 cagatgcttg gtaaaccgcc agtcgaaccc cgtgccgtag ctgaagcccg cgtgcgcgcg
     1021 ttccgaaccc aaatggggaa tctgcccccg gatggcggtg gtgtatttcg gatcgtcttt
     1081 cgcgctgctg ctgtttttgt cgtagcgtat gcccgcattc aggcggaagc ggtcgttgcc
     1141 gcccaagtga aacgcattgt tccaataggc aaatttatat ttcgaccggt tttcgatcag
     1201 cattgtgatt ttggcttggt tggaagtgag gattttgggg tcgtaaagtt ttacgaaata
     1261 gctgtaatcc gagttggcat tgtcccctct gccgccgccc aagccgtatt gcgccgccca
     1321 aacggctttg gaaaagtcga gttgtttttc aaaatcggca gtccattgcg cggtgttttg
     1381 gcggatatgc cggaacgaat ggtaaacctc gccgttgatg ccgcgcaaat cgtaattttt
     1441 cgggatgtcc caagtccaag tgttcatatc gatgcgctgc ttgtcgtagc gcagcttgag
     1501 gctgtcccac gggccgtgtt ccaattcgtt tttgtattcg acaccggagc ggcggcggta
     1561 gctcacgtct tggcggtggc ggtagtcgcc cgttgcggga gatgtggtcg tacccgtcca
     1621 caaattagac agttcgttgg taaaacggtc ggtgcgggag tcttcaaaaa tccagccgat
     1681 gcggttgcgg tcgttgaaat tgtagcccag cttgaacaag gtgcttttgt ttacccactc
     1741 ttgcgggtcg ggttgggagc gtgcaacccc tgtggctacg taatccagcc atttgctggg
     1801 tccggataca tcggtcgggt tatagatata tccggcgttt ttaattttga catcgccctc
     1861 ggtcgagcgg tttttggttt ctttgccgaa gcggcgggta taaaccaata aggcatccaa
     1921 accaaagagc ctgccggagg cggtgatgct gctgaatctt tggctgtttt tgccgacgct
     1981 gccgcccttt atccccaaat ggtagggctt gtcttcggaa acataatcgc ttgcggattt
     2041 ggtttggtaa ttgactgcgc cgcccaatgc gccgctgccg gatttgagcg agtccgcgcc
     2101 tttggtgatg gtaacttcgg aaaagttttc cggctcggaa gtgttgcggt tggcgttgaa
     2161 gttgccgtac gcgccgaaca attcttggaa ggcttcggaa gagcggcttt ccgcctgcgc
     2221 cagcccgtca acgttgatgg cgacgcggtc tttgtccacg ccgcgtatgg taaagccgtt
     2281 agaacccgcc ctgccgcctt cgacgacgga aatgccgggg tcgtagcgca ccaggtcgtg
     2341 ttcgtcgttg accaagagct tgtctaaggt tttgcggcgg attttttctt cgccgagttt
     2401 ttgggttttg tgcgtgccgg taacggtgat ttcgttcaga gtttgggcgg actgcggcgc
     2461 ggggtctgct gcaaaggcgg gaaacgcttg ggcgatggcg gcggcagcca atacgggttt
     2521 gaagggaatg ggcataagaa aaccttttta aaagcgtatg ggttattgtt ttttgagatg
     2581 ttcggtatct tgattggttg tgtcttcaag ttgtttctca taactcacac cgccgaatac
     2641 ggtatcgagg gagcggtcgc cgtcaaaggt gattttgccg cctatactgg tgtcgctgct
     2701 gtaactactg tcgaacttgc caaaaaactt gccgtccaag ttgccggttt gcccgccgga
     2761 tgtggcagtg ccggaaaagg tcagaccgtt aatcgttgct tctttaattt ccacatccgg
     2821 cccgtaatcg ctgttgccga ggattttgcc tgccagtttg ttgctgttga aattggcggt
     2881 gataaaggaa aggacggggg tgttggtagg tggaccccaa taaccgcttt ttggcggcgt
     2941 ataagaggaa gtaacaaatt gcccatttct gacgcggatg ccccaaacct gataagtgat
     3001 tttgcccttg ccggcggttt cgggcgtgtc gtcgctccag gagtatgccg gtttcggcgt
     3061 tttgccgacg gggaagccgc cggcgaagag gtcgatttcg ccgttgggac ctatccacgc
     3121 cccgaatttc atataatctt gtttggtgat ttccgcatac gaagtagccc cggattcgct
     3181 gcaacagata aagatgcggc tgccgtcggc aagccgctgc cctgcgtggc ggtcgggaat
     3241 tttgaaatcg ggggaggagt agctgacggt tatggggtcg gcgtaggatg aaagggcgta
     3301 ttgcgcgccg ccgggtgttt ggaagatgaa tgctttttct tctcttttga tgccgtaact
     3361 ttctacttca tatttccgct gctgaatgga aatgccggat gtgcttccgg tgtcggcggt
     3421 gttgatgttt tcgattttgc tattgtcgtc tgataacttt acctcgccgg tgggcagcgg
     3481 ggtggcggtg gggatggaca cggggacgtg cggttcggct accccccccc ctgcacaggc
     3541 ggcaagggcg gcggcaagcg gcagtaagga cagggctttg tatttcatcg catactcaat
     3601 cttgatgatg tgttaataat agttttgatt atcagtttaa tgatatatga tgtcaactgt
     3661 tttgtgggct gatgtgaaag ccggtaaatg tgaaatccgc cctttgaaaa tcgggcggcg
     3721 gttttttgcc tgcccgcttt cagacggcaa agccggtttt tacgggtttc tgcctgtttt
     3781 tcggatagtt tgacgtgctt cggcggcgtg tttgccggaa aggtaaatga cagggtatgt
     3841 tgtatttcag atacggcttt ttggttgttt ggtgtgcggc aggtgtttct gccgcctatg
     3901 gggcggatgc gcctgcaatt ttggatgaca aagctttgtc gcaggtgtgg cggtcggtgt
     3961 cggataaatg ggcggaatcg gattggaaag ttgaaaatga tgccccgcgc gtggttgacg
     4021 gggatttttt gttggcgcac ccgaaaatgt tggaacatag tttgcgcgac gcgctcaacg
     4081 gcaatcaggc ggatttgatc gcttcgttgg cggatttgta tgccaagctg ccggattatg
     4141 acgcggtttt gtacggcagg gcgcgggctt tgctggcgaa attagcggga aggccggcgg
     4201 aggcggtggc gcggtatcgg gaactgcacg gggaaaatgc ggcagacgag cggattttgc
     4261 tggatttggc ggcggcggag tttgacgatt tccgactgaa gtcggcagaa aggcattttg
     4321 cggaggcggc aaaattggat ttgccggcgc cggttttgga aaatgtgggg cgttttcgga
     4381 aaaaaacgga ggggctgacg ggctggcgtt tttcgggcgg catcagcccg gcggtcaata
     4441 gaaatgccaa taatgccgcg ccgcagtatt gccggcaaaa cggaggccgg cagatatgca
     4501 gtgtcagccg ggcggagcgg gcggcagggt tgaattatga aatcgaggcg gaaaaactga
     4561 cggcgttggc agataatcat tatttgttgt tccgttccaa tatcggcggc acgagctatt
     4621 atttcagtaa aaaatcagct tatgatgacg ggttcggcag ggcgtatttg ggttggcagt
     4681 ataaaaatgc acggcagacg gcggggattt tgccgtttta tcaggtgcag ttgtcgggca
     4741 gcgacggctt tgatgcgaaa acaaaacggg taaacaaccg ccgcctgccg ccgtatatgc
     4801 tggcgcacgg agtcggcgtg cagctgtccc atacttaccg cccaaacccg ggatggcaat
     4861 tttcggtcgc gctggaacat taccgccaac gctaccgcga acaggatagg gcggaataca
     4921 ataacggcag gcaggacggg ttttatgttt cgttggcaaa acgtttgggt gaatcggcaa
     4981 ctgtgttcgg cggctggcag tttgtgcggt ttgtgccgaa acgtgaaacg gtgggcggcg
     5041 cggtcaataa tgccgcctac cggcgcaacg gtgtttatgc cggctgggcg caggagtggc
     5101 ggcagttggg cggtttgaac agtcgggttt ccgcgtctta tgcccgccgc aactataagg
     5161 gcgttgcggc tttctcgaca gaggcgcaac gcaaccgcga atggaatgtc tcgctggctt
     5221 tgagccacga caagttgtcg tacaaaggta tcgtgccggc gttgaattat cgtttcggca
     5281 ggacggaaag taatgtgccg tatgcgaaac gccgcaacag cgaggtgttt gtgtcggcgg
     5341 attggcggtt ttgaatggtg ggataatgcc gtccgaactt tggaaacagg ttcggacggc
     5401 atttttgcgc gttcaggcaa gggcggcggc aaatacgccg cgcagggcgt tggagaggcg
     5461 gatttcttcg gcttcttgca gtgttttttg tgtgatgtgt gtttcgatta cttgatttgt
     5521 ttgcaaatat ttttgcggtt cgtccaatac ggcttggcgc attatgccgt ttaaaatgtc
     5581 taaatctaaa gagggcgtaa gccattgtcc ttggtatttg acgaacacgt tgcttctgcc
     5641 gccttcgagc aggatgccgt ctgaattgaa aaacaggctg tcgaacgcgc cttgtgtttc
     5701 ggcggtttgc cacgcttggt cgaagacggt gcggcaggtg gttttgaagc ggcgcaggta
     5761 gttttgtgcg ggcaggacgg cgggcgaaat gatgacgcgt tgtttgtcgg tcagacggtt
     5821 taaaacggcg cgggacaggc tgatgccgtc tgaagcgagc cgggctttga cgcggaacac
     5881 gccgtcgggc aaatgggcga tgtattgttt gatttgattt tcgcaaccgt cgggcagggg
     5941 caggttgagg gcttgggcgg aggttttcag acggcatagg tggcggtcga gcagggcgca
     6001 ttgcctgttt tccacgcgca gggtttcaaa aatgccgaag tcggggcgca attcgttgag
     6061 gaaacgggct ttccagccgc attcccgata ttcggcggca gggtcgctgt cgatgacgat
     6121 gccggaaccg acaccgtaca cgccttgata aatgccgtct gaaagcggcg tgagcgacaa
     6181 ggtgcggata acgacgttga acgtgccttc aaaccccaag ccgccggaac acgggttcaa
     6241 atagccgatg ctgcccgtat aaagtccgcg cgcttcggct tcgagcgatt cgataatctg
     6301 catactcatt tttttgggcg cgccggtgat gctgccgcag gggaaggcgg cgcggaggat
     6361 gtcggcgaac gaggtgtgcg gcaaggcttg ggcttggatg gtgctggtca tctgccaaac
     6421 gctgccgaaa cgcgatactt taaacggttc gggtacgcat actgtgccgg tttgggcgat
     6481 tttgccgaga tcgttacgca gcaaatcgac aatcatcacg ttttcggcgc ggtttttcgg
     6541 gtctgcttgc aactcggcgg cgcggcgttc gtcttgtccg tcgcccaaaa tcggcgcggt
     6601 gcctttcatc ggttcggtgc tgatggtgcc gtccgaaccg attttgagga agagttcggg
     6661 cgagaaacac agcgtccacg cggattgccc ttgtgcatcg ggcaggtggg acaaaacggc
     6721 ataggggacg ggctggcgca ggcgttggta aagtttgacg ggattgccgt aggcttgcag
     6781 gtgcaggcgg gtagtgtagt tgatttgata ggtgtcgccg cgtcggatgg cttcgtggat
     6841 ttggcggata tggtcgaggt aatcggcttc ggatacggag gattgcggcg tggaaatgcc
     6901 ggcggggagg ccgtctgaat gttgggcaag ccagcttgcg gcatcgatgt cggcgcagtc
     6961 ggcaaaccag tgcatggcaa gattgccgcc gcgttcggaa tcaaccccca tcagcggcaa
     7021 accgaatccg tagtctgcaa acaacaccga atgcagccct ttttgccagc ccgattgcag
     7081 cgcgccgtcc aaagcatcga gttcttcggg acggaaaaaa cggctttcta catgattttg
     7141 atagcgtttt gcgcgaccgc ttacggcatc gtcaaacagg gcgaaatagg gcatggcaat
     7201 tcggggcaaa tgttttgatt atacgctctt tttacacata ttttcagacg attcggcaaa
     7261 tatcggcaaa atgtaatttt atgtagagaa agtggggggc gagggtgtaa aattgtgaaa
     7321 acggattttc atcgtatttc cttttcggtt taaaccccgc cctttagggc ggtagaatca
     7381 gactttattt gggaggggcg taaccccttc caaatcaggg caacacatag ggcgacgctt
     7441 tatgtgtcgt cctgtgtgtt gaaacatttc caacctgaaa tacaataagg agacctttat
     7501 ggcagaccac cagctgcaac cgtttgaaaa cgtagaatta ggcgaaaagc aagatcagct
     7561 ccaagtatag tggattaaca aaaaccagta cagcgttgcc tcgccttggc tcaaagagaa
     7621 cgattctcta aggtgctgaa gcaccaagtg aatcggttcc gtactatctg tactgtctgc
     7681 g
//
LOCUS       DAXHPV010000094         7667 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.094, whole genome shotgun sequence.
ACCESSION   DAXHPV010000094 DAXHPV010000000
VERSION     DAXHPV010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7667)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7667)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7667
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.094"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..638)
                     /locus_tag="ACFM6C_001396"
     CDS             complement(<1..638)
                     /locus_tag="ACFM6C_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158847.1"
                     /translation="MSWNSFGNFMSARSSALAEFGNMVANLVSAKNEKDISKRNEYYK
                     QAGYSALLAFGNLASNIAPGSTSSHIVNGTNASVIASRLSGNISSAIQEHKDGKVNIN
                     RFQNILADLYSLGGLGSTLIEKNGNMQSWGIPLAIAGDIIAATAIATGDTGTISTEEF
                     YNFDNWKGFGYELFEDWSRWVYDWLPDGWNLWKELDRNRSGQYHIYDPLALDL"
     gene            complement(625..1344)
                     /locus_tag="ACFM6C_001397"
     CDS             complement(625..1344)
                     /locus_tag="ACFM6C_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158848.1"
                     /translation="MKNKNYLLVFIVLHIALIVINIVFGYFVFLFDFFAFLFFANVFL
                     AVNLLFLEKNIKNKLLFLLPISIIIWMVIHISMINIKFYKFEHQIKEQNISSITGVIK
                     PHDSYNYVYDSNGYAKLKDNHRYGRVIRETPYIDVVASDVKNKSIRLSLVCGIHSYAP
                     CANFIKFAKKPVKIYFYNQPQGDFIDNVIFEINDGNKSLYLLDKYKTFFLIENSVCIV
                     LIILYLKFNLLLYRTYFNELE"
     gene            complement(1620..2054)
                     /locus_tag="ACFM6C_001398"
     CDS             complement(1620..2054)
                     /locus_tag="ACFM6C_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158849.1"
                     /translation="MDNKKEFINNLTNRYMWIYPLVLNILFLPFYQSYQSFFIALGCL
                     FALVRKMQSLDFKLQNHIVLLNIKSAWADKKVFLIRIVVSWLAVMEIWMCFISESSTW
                     VCGAFCLNSEILEKIFRGFGYSGSLYFLFILMIDLNKLRESI"
     gene            2391..3080
                     /locus_tag="ACFM6C_001399"
                     /pseudo
     CDS             2391..3080
                     /locus_tag="ACFM6C_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611454.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            complement(3212..3727)
                     /locus_tag="ACFM6C_001400"
     CDS             complement(3212..3727)
                     /locus_tag="ACFM6C_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158850.1"
                     /translation="MSAFRKILLIISCLLIASCSFVETIFYMAISPEPVVVDFPLGKK
                     TKRSIELKQKIGKPYAISLGTNFIHYDPKQGERWIDDKLNYPYNISVKIFKVEEDGKK
                     LIIDELLTERSRKLGVGVFGAGGKYSMHIYDFYLPEGEYLFEISDNSEYIPLYDEINN
                     SIRIVVNVRIQ"
     gene            complement(3988..4545)
                     /locus_tag="ACFM6C_001401"
     CDS             complement(3988..4545)
                     /locus_tag="ACFM6C_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FrpA"
                     /protein_id="HFC6158851.1"
                     /translation="MENNKAKSDDNSVSIEFIQDFITASTDVINLSYENFRKNFYTQM
                     STDSTNYAAKHESLGKSVQRELQKTQSQLRQVVRKMQSKYNINNKARAAEISLLRQMQ
                     SQFSRKDVNKNLGNGNTLAQQGSYTKKDGTTAQAGDLLLAADNLHSRLTDKMLSISHV
                     RENTISPFVLGCLKQITINVSHYLK"
     gene            complement(5082..5366)
                     /locus_tag="ACFM6C_001402"
     CDS             complement(5082..5366)
                     /locus_tag="ACFM6C_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158852.1"
                     /translation="MKLALKRSGKYNVYNPLALDLDGDGIETVAAKGFSGSLFDHTNN
                     GIRTATGWIAAYDGFPVRKLNSNGGIISTTDTIFQSLHTWLDHQPNDTCH"
     gene            complement(5363..5656)
                     /locus_tag="ACFM6C_001403"
     CDS             complement(5363..5656)
                     /locus_tag="ACFM6C_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-regulated frpA domain protein"
                     /protein_id="HFC6158853.1"
                     /translation="MNIDDFTPSKIANFFADPDTYSNVLEEVSRFIYSLVPDDANPWK
                     GGEDYIGRGISEWGELLEKWYKQDFLPYLEKNGTNFRNLKIGCLNSLNGQESG"
     gene            complement(5994..6215)
                     /locus_tag="ACFM6C_001404"
     CDS             complement(5994..6215)
                     /locus_tag="ACFM6C_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-regulated frpA domain protein"
                     /protein_id="HFC6158854.1"
                     /translation="MTSANFNINGFGDVKLTPYSPLLGYKAWDSFIGSIQSLSDLIYN
                     VDNNRNKMEITVNNAIQAADSFLSSNWKR"
     gene            complement(7074..7667)
                     /locus_tag="ACFM6C_001405"
                     /pseudo
     CDS             complement(7074..7667)
                     /locus_tag="ACFM6C_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980934.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="iron-regulated protein FrpC"
BASE COUNT         2514 a         1417 c         1177 g         2559 t
ORIGIN      
        1 aggtctaggg cgagggggtc gtagatgtgg tattggcctg aacggtttct gtccaattct
       61 ttccacagat tccagccgtc gggcagccag tcgtataccc aacgagacca gtcttcaaat
      121 agctcatacc caaaaccttt ccagttgtca aaattataaa attcctctgt agatatcgta
      181 ccagtatctc ctgtggcaat agccgttgct gcaattatat ctccagcaat tgctaatgga
      241 atcccccaac tctgcatatt tccattcttc tctattaatg tacttcctaa ccctcccaat
      301 gaatataaat ccgctaaaat attttgaaaa cggttgatat taactttacc atctttatgc
      361 tcctgaatag ctgaagatat atttccagag agacggcttg caatcacaga ggcatttgtt
      421 ccgtttacaa tatgcgatga cgtactacct ggtgcaatat tactagccaa attaccaaat
      481 gctaataatg cactataacc agcttgtttg taatattcat tacgtttcga gatatctttc
      541 tcattttttg cagaaactaa attagcaacc atatttccaa attctgctaa cgcggatgag
      601 cgtgcgctca taaaattacc aaaactattc caactcattg aagtaagtcc tatataaaag
      661 caaattaaat tttaaatata aaataattaa tacgatacaa acactgtttt caataagaaa
      721 aaatgtttta tacttatcta acaagtacaa acttttgttt ccatcattaa tttcaaatat
      781 tacattatct ataaaatctc cttgaggttg attataaaaa taaattttaa caggtttttt
      841 tgcaaatttt ataaaattgg cacatggagc atatgaatga ataccacaaa ccaagcttaa
      901 tcttatggat ttatttttaa catcagatgc aactacatca atataaggtg tttctctaat
      961 taccctacca tatctatgat tatcttttaa tttagcatat ccatttgagt cataaacata
     1021 attataacta tcatgtggtt ttatcacccc agtaatcgag gatatatttt gttcctttat
     1081 ttgatgctca aatttataaa attttatatt tatcatacta atatgaatta ccatccatat
     1141 aataatagaa atcggcaata aaaacaataa tttgtttttt atgttttttt ctaaaaataa
     1201 taaatttaca gcaagaaaga cgtttgcaaa aaacaaaaac gcaaaaaaat caaatagaaa
     1261 aacaaaataa ccaaacacta tattaattac tatcaaggct atatgtaaaa ctataaatac
     1321 tagtaaataa tttttatttt tcatatgtct cattaaataa aatatagctg gtatgattta
     1381 gtgaatatca atttagtggc atagagtgta tactcatcgt attcactctc tcagtcttca
     1441 ggctgcctga aaagcctttg gcggtgactg tttctatgcc gtcgccgtcc aagtctaggg
     1501 cgaggggatc gtagacgtgg tattttccat cacacgcaga aaattttttg cattgtttag
     1561 tatcaccact accaatcatt gttactctcc ttgagtttaa gtcaaacaaa aaatgaaatt
     1621 caaatactct ctcttaactt attgagatca atcatcaata taaataaaaa atataaacta
     1681 ccagaataac caaagccacg aaaaattttt tccaatattt cactatttaa acaaaaagca
     1741 ccgcataccc acgttgatga ttccgaaata aaacacatcc atatttccat tactgccaac
     1801 catgacacta ctatcctaat caaaaatact tttttatctg cccaagcact ttttatattt
     1861 aacaatacaa tatgattttg taatttaaaa tctaagcttt gcatttttct aaccagtgca
     1921 aacaaacaac caagcgcaat aaaaaaagat tggtaggact ggtaaaaagg tagaaataga
     1981 atatttaaga ccaatggata gatccacata tacctatttg ttaaattatt aataaattct
     2041 tttttgttat ccataaaatt tccataaaat attgcgctga tattgcactg agtttattag
     2101 caaacaacgt aaagaaaata tttattatga taagtgtttt ttaagtttca ttttcaaatg
     2161 atggcgcgta ataaaaagtt tcacaaatcc gtttttcaga ctatctaagt atctatttta
     2221 caatctattt caataatcgt tatgtcttaa caactcttct tggcattata gatgctcact
     2281 catatcattt aatgatactc ttgattaatc tttatgcgat ttagcgaaat taaaatttct
     2341 cttttttgtt tgaggctgta ctagattagc agatatgtta cccccgaaat atgaagataa
     2401 cacactgcaa attaaagaaa aaagtacaga aagagctgct ccgttttttt gtactcgaag
     2461 ttaccgcccg ttctgctgcc gatattttgg gtatccatcc caattcggca gtcctgttct
     2521 accgcaaaat ccgtatagtc atcagccatt atctggcctt ggctgccaat gaggttttcg
     2581 agggcgctgt cgagttggac gaaagctatt tcggcggacg gcgtaaaggc aaacgtggtc
     2641 gcggtgcggc aggaaaagtg gttgtcttcg gcattctgaa acgtaacgga cgggtctata
     2701 ccgttgtcgt agataatgcc aagtccgata ctttaatgcc tgttatcaaa cagaaaatca
     2761 tgccggacag tattgtttat accgatagtc tgagcagcta tgacaagctg cacgtaagcg
     2821 gttttatcca ttaccgcatc aaccattcca aggaatttgc tgaccgtcag aaccacataa
     2881 acggcattga gaacttttgg aatcaggcaa aacgcgtctt gcgcaaatag aacggaattg
     2941 atcgcaaatc tttcccgctg ttcttgaaag aatgcgaatt tcgatttaac ttcggcacac
     3001 cgtcccgaca gctaaaaatc ttgcgggatt ggtgtggatt tagggctaat ctagtacagc
     3061 cccgattttt ttatctctag ccgaatacag ttcaacccaa acgtacccgt cttggataca
     3121 cccccttgtt tcagtggcgt accctgctcc gcaaatttta cagttatcgc ataataatca
     3181 gccataagta accccacatt tctagaaaaa tttactgaat tcgtacatta actactattc
     3241 ttatagaatt atttatttca tcgtaaagtg gaatatattc actattatca gaaatctcaa
     3301 ataaatattc cccttccggc aaataaaaat cataaatatg catactgtat tttcccccag
     3361 ctccaaatac tccgacccct aattttctac ttctctctgt aagcaactca tctataataa
     3421 gttttttacc atcttcttcc actttaaata ttttaaccga tatattatat ggatagttta
     3481 acttatcatc aatccacctc tccccctgtt ttggatcata atgtataaaa ttagttccta
     3541 acgatattgc ataaggttta ccaattttct gtttgagttc aatagatctt tttgtttttt
     3601 taccaagagg aaagtctacc acaacaggtt ctgggctaat agccatataa aaaatagttt
     3661 caacaaaact gcagctagca atcaataggc aagatattat taataatatt tttctaaatg
     3721 cagacataat aaaaatttcc aaaaaatcca tatcagaata tactaattat ttgtataatt
     3781 aataaggaag agaaagactc aaaacggcta tgagatttcc gcctgaaaat aatgaaataa
     3841 aagtccatag taatgaataa tagctttatc agccccccct ttaatgcaaa catagagaat
     3901 acttcccttg aagcactatc aatttctact taactaaaac tctagctcta ttttaaaatt
     3961 ttgtcaaaaa tagttaaata cttttattta ttttaaataa tgagatacat ttatggttat
     4021 ttgttttaga cagcctaaaa caaacgggga aatcgtgttt tcccgaacat ggctaatgga
     4081 tagcattttg tccgtgaggc ggctgtgcag gttgtcagca gccaacagca aatcgcctgc
     4141 ttgtgcggtt gtgccgtctt ttttggtgta gctgccttgt tgagccaaag tgttgccgtt
     4201 accaagattt ttgtttacat cttttcgaga aaattggctt tgcatttgcc ttaacaaaga
     4261 tatttctgct gctcgtgctt tattatttat attatattta ctctgcattt ttcttacaac
     4321 ttgtctcaac tgactttgtg ttttttgtaa ttcacgttgt accgattttc ctaaactttc
     4381 atgtttggct gcataattgg tagaatcagt tgacatttgt gtataaaaat ttttacgaaa
     4441 attttcgtaa ctcagattaa ttacatccgt acttgcagtt ataaaatctt gtataaattc
     4501 aatagaaact gaattatcat cagatttggc tttgttattt tccatattga gcctctctta
     4561 atttgaaaaa attaacataa acatttaaaa ataaaacaaa attatataat aaaaaaaata
     4621 atgagaatat aaaggataaa aagagagtta agttatttaa tcggacttgt tctctataaa
     4681 tcataaggca ccaaataagc cataataaat ttagtaaata aaaactgctt atacccaact
     4741 ttcttttctt ggaacctatt attatttcaa ctctggatga aaaaatagaa tttaaaaatt
     4801 tttttctttg atatatcgtt aatatctccc tagtttttct taaaaaaata taatcatata
     4861 tatactacac aacattggta ataaataaat taaaagcgaa aggtaattaa attgataatt
     4921 gtaaattata taataaacaa catacgaaga aaaaattatt atagatgatt tgctatacga
     4981 ataaaaaaat atcctaccta gcccgaacct tcttataatt tgtactatgt gatcattcat
     5041 ttcaatatcc atttaagctt tcaattaatt ttctatattt ttcaatggca tgtatcattt
     5101 ggttgatgat caagccatgt atgcaaagat tggaatatgg tatctgtcgt gctaataatg
     5161 cccccgttac tgtttaattt gcgcacagga aaaccgtcat atgcagcaat ccagcccgtg
     5221 gcggtgcgga tgccgttgtt ggtgtgatca aataagctgc ctgaaaagcc tttggcggcg
     5281 acagtttcta tgccgtcacc gtccaaatct agggcgaggg gattgtaaac gttatatttg
     5341 cctgaacgtt tgagagctaa tttcaaccac tctcttgccc attcagggaa ttcaggcagc
     5401 caatcttcaa atttcggaaa ttggtcccat tcttttcaag ataagggaga aaatcttgtt
     5461 tataccattt ttccagtaac tctccccatt cacttatccc tcgtccaata taatcttcgc
     5521 cccctttcca agggtttgca tcatcaggaa ctaaggaata tataaaccta gatacttctt
     5581 ctaatacatt gctgtatgta tcaggatccg caaaaaagtt tgctatctta cttggtgtaa
     5641 aatcatctat attcattata gattcgccaa gcctctcgtt tccataatcc ttatttaatt
     5701 caattcatgc tgtaaaacag tagaggattt tagcattcta gaattaagga catcatttaa
     5761 accagttttt aatttagttg gtaagaattt gctttgagcc atcgcctctg tttgttgttt
     5821 tatatattgt aatccatcac cagcagcaat gaatatatca ccaattgctt gttgaatatc
     5881 attaggttta aattttcctg tttctcgtat atctcgagat acatttctta aatttaaaaa
     5941 atgttatcga aggatgcaag taaagaagca gtatttgtta ttttgttatt ttgttatctc
     6001 ttccaattac tgcttaaaaa gctatctgca gcttgaatag cattattaac agtaatttcc
     6061 attttatttc tattgttatc cacattatag attaaatcag ataaggattg aatagaacca
     6121 ataaatgaat cccaagcttt atatcccaag agtggtgaat agggtgttaa tttcacatct
     6181 ccaaaaccgt taatattaaa atttgcagat gtcatatctg ctttcctttc aagtaaatta
     6241 aaaaaataac gtgaggaatt aaaattaaga ataaattaat tatcgactca atataatatg
     6301 aatcaattag ctctcttatg gtaaatataa gaggtaaaaa tattaaaaat aaactaataa
     6361 agttcagaaa aatagtaaat ggaatatttt catatggaaa aattctacaa aatacaagta
     6421 atattccatg acatattagc aaatgagtaa aatttattat aaaatatata aatatttccc
     6481 catcgtaaga tatattcaaa taaagacata taaacaatat gaagtatata aaatatattt
     6541 tttggcatct aaaaaataaa cttttagcaa tcatatataa atagcttgta gaataaaaaa
     6601 cgaaaattat taattatcgt aggtgtgcat ttattccaac acggtttcat gcagcttaaa
     6661 aaccaaaaat tctttctccc tttatccttt cttaaaaata gcgttttcaa attctgcaac
     6721 gacaggtttc attcaagtag gactgccgtg attgcatcaa ttgcttcgcg gcatggcatc
     6781 catatcacac aacaggacat ttattctcgg gtaagtccac cttcatcctc ttccgccagc
     6841 aggaacagtt acaggctacc taaaatatgc tctgtgctcg gatagtaaat atttcctttc
     6901 tcactattgt ttgtcattta atcgacagtc tactctttct ctaaaatttc gtcaaaaata
     6961 gttaaatact tttatttatt ttaaataatg atatacattt atggttattt gtttagacag
     7021 cctaaaacaa acggggaaat cgtgttttcc cgaacatggc taatggatag cattttgttc
     7081 gtgaagcggc tgtgcagatt gtcggctgct aaaagtaaat cccccatttt tgcggttgta
     7141 ccgtctgttt tggtgtagct gccttgctga gccaaagtgt taccgttacc gagattttta
     7201 tttacatctt tataggcgag atccaaagat tgaataccca attcttcaag ggtacgcaat
     7261 tcattagctt gggaaatgcc gtcctgattg agatcctgcc atacacgcag ggattggaat
     7321 gcggcgtctg ccgcgttgat gatgttgtcg ccgtttgaat ccaattcggc caaagctgca
     7381 tagccgtgtt tggcaaaaga accgtctgcc agtttggtgt tgtcgccgaa gagttccgcg
     7441 ccgttgtcga tgatgccgtt gccgttcaaa tcgcggacga gtaaaccgtc atcggcagaa
     7501 acccaaccgg tggcggtgcg gatgccttga ttgcggtggt cgaacaatgc acctgcaaag
     7561 cctttggtgg caacggtttc tataccgtct ccgtccaaat ctagggcgag ggggtcgtag
     7621 acatgatatt tgccattgcg ttttttagtt tctttaaccc aaggagc
//
LOCUS       DAXHPV010000095         7667 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.095, whole genome shotgun sequence.
ACCESSION   DAXHPV010000095 DAXHPV010000000
VERSION     DAXHPV010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7667)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7667)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7667
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.095"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            271..1640
                     /locus_tag="ACFM6C_001406"
                     /pseudo
     CDS             271..1640
                     /locus_tag="ACFM6C_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688931.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
     gene            1884..2540
                     /gene="cmk"
                     /locus_tag="ACFM6C_001407"
     CDS             1884..2540
                     /gene="cmk"
                     /locus_tag="ACFM6C_001407"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004127 - (d)CMP kinase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HFC6158855.1"
                     /translation="MNRQKVIAIDGPGASGKGTVAARVAAALGYDYLDTGALYRLTAL
                     YAQKQGVGWHDEENVSELAKKLPAVFSGSRILLGGEDVSDGIRTEAIGMGASAVAQLP
                     KVRAALLQRQRDFLTEKGLVADGRDTGSVVFPQAELKIFLTAESKIRAERRAKQIGIP
                     CEGLAFERILSDIEARDEADRNRKVAPLKQQPDALLLDTSRLTIEETVKKVLDWYREV
                     "
     gene            2696..4381
                     /gene="rpsA"
                     /locus_tag="ACFM6C_001408"
     CDS             2696..4381
                     /gene="rpsA"
                     /locus_tag="ACFM6C_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HFC6158856.1"
                     /translation="MSMENFAQLLEESFTLQEMNPGEVITAEVVAIDQNFVTVNAGLK
                     SESLIDVAEFKNAQGEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEA
                     MENGNILSGIINGKVKGGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKL
                     DKKRNNVVVSRRAVLEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGL
                     LHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYP
                     QGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL
                     EIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGLPGGIDGLV
                     HLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDPFGNFISVND
                     KGSLVKGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVT
                     VDRKNRSIKLSVKAKDAKESREALNSVNAAANANAGTTSLGDLLKAKLSGEQE"
     gene            4392..4706
                     /locus_tag="ACFM6C_001409"
     CDS             4392..4706
                     /locus_tag="ACFM6C_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003744632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HFC6158857.1"
                     /translation="MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLAR
                     GQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKHVPHFKPGKELRERVDLALKEN
                     AN"
     gene            complement(5057..5464)
                     /locus_tag="ACFM6C_001410"
     CDS             complement(5057..5464)
                     /locus_tag="ACFM6C_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HFC6158858.1"
                     /translation="MTYTTAKAAEKIGISAHTLRFYDKEGLLPNIGRDEYGNRCFTDN
                     DLQWLGLLQCLKNTGMSLKDIKRFAECTVIGDDTIEERLSLFENQIENVKCQIAELKR
                     YLDLLEYKLAFYQKAKALGSVKAVNLPQIPETA"
     gene            5612..6721
                     /locus_tag="ACFM6C_001411"
     CDS             5612..6721
                     /locus_tag="ACFM6C_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000842106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004024 - alcohol dehydrogenase (NAD+)
                     activity, zinc-dependent [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0051903 - S-(hydroxymethyl)glutathione
                     dehydrogenase [NAD(P)+] activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-(hydroxymethyl)glutathione dehydrogenase/class
                     III alcohol dehydrogenase"
                     /protein_id="HFC6158859.1"
                     /translation="MKSRAAVAFAPNQPLQIVEIDVEMPRKGEVLIRNTHTGVCHTDA
                     FTLSGSDPEGVFPVVLGHEGAGVVVAVGEGVSSVKPGDHVIPLYTAECGECEFCCSGK
                     TNLCVSVRDTQGKGLMPDGTTRFSYQGQPIYHYMGCSTFSEYSVVAEVSLAKINPEAN
                     HEQVCLLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGAIGLAVVQGARQAKAGRIIAID
                     TNPSKFELAKQFGATDCLNPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRQALES
                     AHRGWGQSIIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGVKGRSELPKMVEDSMKGD
                     IELEPFVTHTMTLDQINEAFELMHEGKSIRAVIHY"
     gene            6730..7557
                     /gene="fghA"
                     /locus_tag="ACFM6C_001412"
     CDS             6730..7557
                     /gene="fghA"
                     /locus_tag="ACFM6C_001412"
                     /EC_number="3.1.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011961786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018738 - S-formylglutathione hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0046294 - formaldehyde catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HFC6158860.1"
                     /translation="MKLIEQHQIFGGSQQVWAHNAQTLQCEMKFAVYLPNNLENRPLG
                     VIYWLSGLTCTEQNFITKSGFQRYAAEHQVIVVASDTSPRGEQVPNDDAYDLGQSAGF
                     YLNATEQPWAANYQMYDYILNELPRLIEKHFPTNGKRSIMGHSMGGHGALVLALRNQE
                     RYQSVSAFSPILSPSLVPWGEKAFTAYLGKDREKWQQYDANSLIQQGYKVQGMRIDQG
                     LEDEFLPTQLRTEDFIETCRAANQPVDVRFHKGYDHSYYFIASFIGEHIAYHAAFLK"
BASE COUNT         2050 a         1861 c         1836 g         1920 t
ORIGIN      
        1 ttcaaattcc ctctctttca tcattattta aatgctatca ttaatataat taacaaaatt
       61 tcatttccat acaccgatgt agaagaataa caaattaatc tatttataaa ctccgattct
      121 tcctcatcgg gttatactca tcagaaatac tcactgaaat atatgccttt tacatggaaa
      181 atcactagac agttgaaaag caatcagtca gttcctgtta aaaaacgcgt gtagaatttc
      241 cgctttatct caatcggaca cggtttcaat atgtcttccc cttcaaatac caatcgtcaa
      301 acttggtcca gccgattaac ctatatcctg accgttgccg gcgcgactgt cggtttcggc
      361 gcgacgtggc gtttcccgta tttggtcggt gaaaacggtg gtggcgcgta tgtgttttta
      421 ttctgtatcg cgatgctggt tatcggcatt ccgatgattt tggtggaaaa tgtcatcgga
      481 cggcgcaaag gcgtgaacgc gctggatgcg ttcggcggtc cgatgaacgg caaacccatt
      541 gctaaaattt ggaaactggt cggctggatg gggctgctcg gcacgttcgg catcatggct
      601 tattacatgg tactcggcgg ctgggtaatc agctatatcg ttaatattat tggaggaaat
      661 ttgaatattt ccagccccat cgacggtgtg gttacaaaag gcttctttgc cgaacacatt
      721 gaaacagccc ttgggaaatt gcgttttata cgctgctttt tgtcgccgtg aaccaatgga
      781 ttttggtcaa aggcgttatc ggcggcattg aaaaagcggc aaaatagctg atgccgctgc
      841 tgtttttgtt cctaatcgcg atggtcgtcc gcaacgttac ccttccgggc gcaatggaag
      901 gggttgcttt ctatctgaaa cctgatttca gcaagattac cgccgaactg ttcgtcttcg
      961 ttttggggca ggtatttttt gccctgagcc tgggtttcgg cgtgatgatt accttgtcca
     1021 gctatttgga taaaaacgaa aatctggtgc aaaccgcagt tatcacggca attaccaata
     1081 ccatcatcgc cgtacttgcg ggctttatga ttttcccgtc gctcttcagc ttcggcgttg
     1141 cccccgattc cggtccgact ttggtgttcc aaagcttgcc gattgtgttc tcacatatgt
     1201 gggcgggacc tgtgttcgcc gtgattttct tctctctgct cctgattgcc gctctgacaa
     1261 cttcgctgac gatttatgaa gtgttgatta cgaccattca ggaaaaaacc aaaatccgcc
     1321 gtaccgccgc aatcacgatt gtattggccg ccatctacgt tttcggcaac atcccgtcta
     1381 ttttgagcta tggcccgtgg aaagacgttt ccgtgttcgg caaaaatatt ttcgatgcct
     1441 tcgactacat cagcggcaac atcttgttta tgctgaccgc gcttggctcg gcattgtttg
     1501 tcggtttcgt gatgaaggat gaagcgaagg aagaattgct ttataaaggc aaccatacga
     1561 cggtcaatat ttggtttgcc tatgtgaaat acctcgtgcc gctggtgatt ttgctgattt
     1621 tcgtcagcaa cctgttttaa tccgcagcaa tcgatgccgt ctgaaggtca tacctctttc
     1681 agacggcatt gcattgatgt ccgccacaat acccgcaacg ccggaatccg aaccggcttg
     1741 ccggcttctg tcggatattt ccgggcaggc ggcgttccgt ctgcttagac aatcgtcctt
     1801 taaaacaggt agaatccgcc ccaacgggaa acacatcctt cagacggcaa aacccatacc
     1861 ccaaaccatc aggaatcccc attatgaaca gacaaaaagt catcgccatc gacggcccgg
     1921 gcgcatcggg caaaggcacg gtcgccgccc gcgtcgccgc cgcattggga tacgattatc
     1981 tcgataccgg cgcactctac cgcctgactg ccctatatgc acaaaaacaa ggcgtgggat
     2041 ggcacgatga agaaaacgtt tccgaactgg caaaaaaact gcccgccgta ttttcaggca
     2101 gccgcatcct gctcggcggc gaagacgttt cagacggcat ccggacagaa gccatcggca
     2161 tgggcgcatc cgcagtcgca cagttgccta aagtccgcgc cgccctgctg caacgccaac
     2221 gcgattttct gaccgaaaaa ggactggttg ccgacggacg ggataccgga tcggtcgtct
     2281 tcccccaggc cgaactcaaa atttttctga cagcagaatc caaaatcagg gccgaacgcc
     2341 gcgccaaaca aatcggcatc ccctgcgaag gtttggcatt cgagcgcatc ctgtccgaca
     2401 tcgaagccag agacgaggca gaccgaaacc gcaaagttgc ccccctgaaa caacagcccg
     2461 atgccctgct tttggacaca agccgcctga ctatagaaga aactgtaaaa aaagtgcttg
     2521 attggtatcg tgaagtttaa attttcaggt ataatcgcac aaattacgtt tcagacggca
     2581 taaaaatccc ccatatgccg tctgaaacct tatgtacccg tctgccctgc caaggacggc
     2641 agatatccac caacccaccc cgcacccctt ggcggtgtac cgaaaagagt tatatatgtc
     2701 tatggaaaat tttgctcagc tgttggaaga aagctttacc ctgcaagaaa tgaacccggg
     2761 tgaggtgatt accgctgaag tagtggcaat cgaccaaaac ttcgttaccg taaacgcagg
     2821 tctgaaatca gaatccctga ttgatgtagc tgaattcaaa aacgctcaag gcgaaattga
     2881 agttaaagtc ggcgacttcg ttaccgttac catcgaatcc gtcgaaaacg gcttcggcga
     2941 aaccaaactg tcccgcgaaa aagccaaacg cgctgccgat tggattgccc tggaagaggc
     3001 catggaaaac ggcaacatcc tgtccggcat catcaacggc aaagtcaaag gcggcctgac
     3061 cgttatgatt agcagcatcc gcgcattcct gccgggttct ttggtcgacg tacgtcctgt
     3121 aaaagacact tctcacttcg aaggtaaaga aattgaattc aaagtgatca aactggacaa
     3181 aaaacgcaac aacgttgttg tgtcccgccg cgccgttctg gaagctacct tgggtgaaga
     3241 acgcaaagcc ctgctggaaa acctgcaaga aggctccgtc atcaaaggca tcgttaaaaa
     3301 cattaccgat tacggtgcat tcgttgactt gggcggcatc gatggtctgt tgcacatcac
     3361 cgatttggca tggcggcgcg tgaaacaccc gagtgaagtc ttggaagtcg gtcaggaagt
     3421 tgaagccaaa gtattgaaat tcgaccaaga aaaacaacgc gtttccttgg gtatgaaaca
     3481 actgggcgaa gatccttgga gcggtctgac ccgccgttat cctcaaggca cccgcctgtt
     3541 cggcaaagta tccaacctga ccgactacgg cgcattcgtc gaaatcgaac aaggcatcga
     3601 aggtttggta cacgtctccg aaatggactg gaccaacaaa aacgtacacc cgagcaaagt
     3661 cgtacaactg ggcgacgaag tcgaagtcat gattttggaa atcgacgaag gccgccgccg
     3721 tatctctttg ggtatgaaac aatgccaagc caatccttgg gaagagtttg ccgccaacca
     3781 caacaaaggc gacaaaatct ccggcgcggt taaatccatt accgatttcg gcgtattcgt
     3841 cggcctgccc ggcggcatcg acggtttggt tcacctgtcc gacctgtcct ggaccgaatc
     3901 cggcgaagaa gccgtacgca aatacaaaaa aggcgaagaa gtcgaagccg tcgtattggc
     3961 aatcgacgtg gaaaaagaac gcatctcctt gggtatcaaa caactggaag gcgatccgtt
     4021 cggcaacttc atcagcgtga acgacaaagg ttctttggtt aaaggttccg tgaaatctgt
     4081 tgacgccaaa ggtgctgtta tcgccctgtc tgacgaagta gaaggctacc tgcctgcttc
     4141 cgaatttgca gccgaccgcg ttgaagattt gaccaccaaa ctgaaagaag gcgacgaagt
     4201 tgaagccgtc atcgttaccg ttgaccgcaa aaaccgcagc atcaaacttt ccgttaaagc
     4261 caaagatgcc aaagaaagcc gcgaagcact gaactccgtc aatgccgccg ccaatgcgaa
     4321 tgccggcacc accagcttgg gcgacctgct gaaagccaaa ctctccggcg aacaagaata
     4381 aggttgcaga catgacaaag tctgagttaa tggttcgttt ggcagaagtg tttgccgcca
     4441 aaaacggcac gcatcttctg gcaaaagacg tagagtacag cgtaaaagtc ttggttgaca
     4501 ccatgactag atcgcttgcc cgaggtcaac gcatcgaaat ccgcggtttc ggcagcttcg
     4561 atttgaacca tcgtcctgcc cgcatcggtc gcaatcccaa aaccggcgag cgtgtggaag
     4621 tacctgaaaa acatgtaccc cacttcaagc ccggtaaaga attgcgcgag cgggtcgact
     4681 tggctttaaa agaaaatgcc aattaaacct tagcatcaaa acgccgctgt tacgcggcgt
     4741 tttttctgtg gtttaacttc atccgctgct tcaatacctt gagccaagca agcaacggat
     4801 tagagcgtgg atttttttat agtggattaa caaaaaccag tacggcgttg cctcgcctta
     4861 gctcaaagag aacaattctc taaggtgctg aagcaccaag tgaatcggtt ccgtactatt
     4921 tacactgtct gcggcttcgt cgccttgtcc tgatttttgt taatccacta tatcattgct
     4981 tacaatccgc tttttaaaca acaaattttt gatttctatt acgaacagga caaaaatcct
     5041 gcttattgca ctaaaactaa gccgtttcag gaatttgcgg caaatttaca gcttttaccg
     5101 agcctaatgc tttcgctttt tggtaaaacg ccaatttgta ttcaagcaaa tctaaatagc
     5161 gttttaattc ggcaatttga cacttcacat tttctatttg attttcaaac aaggaaaggc
     5221 gttcttcaat ggtatcgtcg ccaatgacgg tacattccgc aaagcgtttg atgtctttta
     5281 agctcattcc cgtatttttc aagcattgca ataagcccaa ccattgcaaa tcgttatcgg
     5341 taaaacagcg gttaccgtat tcatcacgtc cgatattggg caacaaacct tctttgtcgt
     5401 aaaaacgtag ggtgtgggcg gagatgccta ttttttcggc ggctttggca gtagtataag
     5461 tcattttccc tccttctaaa caaaaacagt aaaaaacact tgctttagag ttaactctaa
     5521 agtgtaaact gttgctatgt tgctcaggca aggcaacttt gtcaatgaat taagaggaaa
     5581 gacaatggaa atgaaacaag ccgattcaac catcaaatct cgtgcggcgg tggcattcgc
     5641 ccctaaccaa cccttacaaa ttgtggaaat cgacgtagaa atgccgcgta aaggcgaggt
     5701 gttaatccgc aatacccaca ctggcgtgtg ccatactgat gcgtttacgt tatcaggaag
     5761 cgatcctgaa ggcgtattcc ctgtggtgct tggacacgaa ggtgcgggtg tggtcgttgc
     5821 tgtgggcgaa ggtgtgtcaa gcgtaaaacc gggtgatcac gtgattccgc tttacaccgc
     5881 cgaatgtggc gaatgtgagt tttgttgttc aggtaaaacc aacttgtgcg tctcagtgcg
     5941 tgatacacaa ggtaaaggct taatgccgga cggcacgacg cgtttttctt atcaaggtca
     6001 gccaatctat cactatatgg gctgttcgac tttcagtgaa tactccgttg ttgccgaagt
     6061 ttcactggcg aaaatcaacc ctgaagccaa ccatgaacaa gtatgtttgc tcggctgcgg
     6121 cgttaccaca ggtattggtg cggtacataa tacggcaaaa gtgcaagaag gcgactctgt
     6181 tgccgtgttt ggcttaggcg cgattggttt ggcggtggtg caaggtgcgc gtcaagccaa
     6241 agccggccgc attatcgcca ttgataccaa tccatcaaaa tttgagttgg caaaacagtt
     6301 cggtgcaacg gattgtttga acccgaacga ttacgataaa ccgatcaaag atgtgttgtt
     6361 agacattaat aaatggggca ttgaccatac ctttgaatgt atcggcaacg taaacgtaat
     6421 gcgtcaggca ttagaaagtg cacaccgtgg ttggggtcaa tccattatca tcggcgtagc
     6481 aggtgcagga caagaaattt caacgcgtcc gttccagttg gtaacaggtc gtgtttggaa
     6541 aggctctgca tttggtggtg tgaaaggtcg ctctgaactg ccgaaaatgg tggaagattc
     6601 aatgaaaggc gacattgagt tagaaccgtt tgtaacccac acaatgacac tcgatcaaat
     6661 caatgaagcc tttgagttaa tgcacgaagg taaatcgatc cgcgccgtta ttcactacta
     6721 aggtatgcga tgaaactgat tgaacaacat caaatttttg gcggttcgca acaagtttgg
     6781 gcacacaatg cccaaacgct tcaatgcgaa atgaaatttg ccgtctattt gccaaataat
     6841 ctagaaaatc gacctcttgg cgtaatttat tggctttccg gcttgacgtg tacggaacaa
     6901 aatttcatta ccaaatcagg ctttcagcgt tatgcggcag aacatcaagt aattgtggtg
     6961 gcctccgata ccagccctcg cggagagcaa gtgccgaacg atgatgctta cgatttagga
     7021 cagagtgcag gcttttattt gaatgcgacc gaacagcctt gggcggcgaa ttatcaaatg
     7081 tatgattaca ttttgaacga gctgccccgt ctgattgaga aacactttcc taccaacggc
     7141 aaacgttcca ttatgggaca ttcaatgggc ggacacggcg cattggtatt ggcgctgcgg
     7201 aatcaggaac gttatcaaag tgtttctgcc ttttcgccta ttttatcgcc aagcctcgtg
     7261 ccgtggggag aaaaagcctt tactgcttat ttagggaaag accgtgaaaa atggcagcaa
     7321 tatgatgcta actcactcat tcaacaaggc tataaagtgc aaggtatgcg catcgatcaa
     7381 ggcttggaag atgagttttt gccgacacaa ttgcgtaccg aagattttat cgaaacctgc
     7441 cgtgcggcaa accagccggt cgatgtgcgt ttccataaag gctacgatca cagctattac
     7501 ttcatcgcca gttttattgg cgagcatatt gcttatcacg ccgcgttttt gaagtaaacc
     7561 aaagagcgtt cagtgttcaa agcagttttg ggatagccgg cacgagggcg gtaagaagtg
     7621 ccggcataaa cgtatgccgt ctgagccgga aggagccgac tctacgg
//
LOCUS       DAXHPV010000096         7648 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.096, whole genome shotgun sequence.
ACCESSION   DAXHPV010000096 DAXHPV010000000
VERSION     DAXHPV010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7648
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.096"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(107..1030)
                     /gene="era"
                     /locus_tag="ACFM6C_001413"
     CDS             complement(107..1030)
                     /gene="era"
                     /locus_tag="ACFM6C_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HFC6158861.1"
                     /translation="MDIETFLAGERAADGYRCGFVAIVGRPNVGKSTLMNHLIGQKIS
                     ITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDAV
                     VFVVEAMRFTDADRVVLKQLPKHTPVVLVVNKIDKDKAKDRYALEAFVAQVRAEFEFA
                     AAEAVSAKHGLRIANLLELIKPYLPESVPMYPEDMVTDKSARFLAMEIVREKLFRYLG
                     EELPYAMNVEVEQFEEEDGLNRIYIAVLVDKESQKAILIGKGGERLKKISTEARLDME
                     KLFDTKVFLKVWVKVKSGWADDIRFLRELGL"
     gene            complement(1077..1796)
                     /gene="rnc"
                     /locus_tag="ACFM6C_001414"
     CDS             complement(1077..1796)
                     /gene="rnc"
                     /locus_tag="ACFM6C_001414"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HFC6158862.1"
                     /translation="MKDDVLKQQAHAAIQKKLGYAFRDISLLRQALTHRSHHAKHNER
                     FEFVGDSILNYTVARMLFDAFPKLTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLG
                     AGELKSGGFRRPSILADAMEAMFAAVSFDADFNTAEKVVRHLFADRVRRADFQNQAKD
                     GKTALQEALQARRFALPKYRIEEQIGYANDSMFVISCDLGELGFVCRAKGTSRKAAEQ
                     EAAKEALKWLEKKLPLKKKKK"
     gene            1963..2286
                     /locus_tag="ACFM6C_001415"
     CDS             1963..2286
                     /locus_tag="ACFM6C_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2185 domain-containing protein"
                     /protein_id="HFC6158863.1"
                     /translation="MNAFAQALSSALDRCIATNTVAKQNRPVGFLYREAPVFENDSGW
                     RFFSGDETDEYTDDPDNFSIVSLADIAKTNPETAALLSQPEGSAWELAEDGTFQTVAD
                     WQPQD"
     gene            2334..2810
                     /gene="ribH"
                     /locus_tag="ACFM6C_001416"
     CDS             2334..2810
                     /gene="ribH"
                     /locus_tag="ACFM6C_001416"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HFC6158864.1"
                     /translation="MNTIAPNLDGKHLRIGIVQARFTNEIGSEMLKVCCRTLQELGVA
                     DENITVATVPGALEIPIALMNFASSEKFDALIAIGVVIRGETYHFELVSNESGAGVSR
                     VALDYNIPIANAVLTTENDAQAIERIEEKASDAAKVAVECANLVNLLLEEQFEDEE"
     gene            2888..3313
                     /gene="nusB"
                     /locus_tag="ACFM6C_001417"
     CDS             2888..3313
                     /gene="nusB"
                     /locus_tag="ACFM6C_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HFC6158865.1"
                     /translation="MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMPDFAKADE
                     ELFNKLFFGTQTNAADYIQKIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVI
                     INEAIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKRR"
     gene            complement(3394..4428)
                     /gene="pyrC"
                     /locus_tag="ACFM6C_001418"
     CDS             complement(3394..4428)
                     /gene="pyrC"
                     /locus_tag="ACFM6C_001418"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004151 - dihydroorotase activity
                     [Evidence IEA];
                     GO_process: GO:0019856 - pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HFC6158866.1"
                     /translation="MQTLTIIRPDDMHLHLRDGDALKAVAPYTARQMGRAVIMPNLKP
                     PVVSVADALAYKARIMAALPEGSAFEPLMTLYLTDNATPELVREAKAAGIVAFKLYPA
                     GATTNSDSGVTDLFKLIPVLEEMAKQGILFLVHGEVTDPEIDIFDREAAFIGRVMKPV
                     LAQVPNLKVVFEHITTAEAARLVLEAGDNVAATVTPQHLLLNRNDLLVGGVRPHHFCL
                     PVLKRETHRQALVAAVTGEKAHKFFLGTDSAPHAKSAKENACGCAGMFSAMTAVELYA
                     EVFEKAGALDKLEAFASKNGARFYGIPENAGTITLVKQSQTVPASVPYGDGELVPMRA
                     GGEIGWTVQY"
     gene            complement(4644..4790)
                     /locus_tag="ACFM6C_001419"
     CDS             complement(4644..4790)
                     /locus_tag="ACFM6C_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010791287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158867.1"
                     /translation="MPSEMRMSRPTALFLNIVCAACRFKNKPSGVQCRHFGRIAADLF
                     RNGC"
     gene            complement(4791..5015)
                     /locus_tag="ACFM6C_001420"
     CDS             complement(4791..5015)
                     /locus_tag="ACFM6C_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HFC6158868.1"
                     /translation="MNSETLDVTGLKCPLPILRAKKALAQMQQGDVLTVLATDGGAPG
                     DFEAFCRQTGHVLLDASEQDGVFTLVVKHK"
     gene            5124..5735
                     /locus_tag="ACFM6C_001421"
     CDS             5124..5735
                     /locus_tag="ACFM6C_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNP1-like family protein"
                     /protein_id="HFC6158869.1"
                     /translation="MRRTTLLLLALAAGTSLAAGFSQKDTPINTRYRETPEEAAAREF
                     KEHTAKLPPLPDTHSDGWFDIYVDENYGKQPKILLDSLQIMPAPDGSIRYILNIRSDK
                     GYDNLTAEGIFCARFSIRFGNGKPSSYKVFGYGDTVNRRWIQPRNAEWKPIGGTLSRN
                     DALRTVLYQAFCEGGVPADTKGLVQRLKERAGRYAPSIKPHNK"
     gene            complement(5795..6667)
                     /gene="accD"
                     /locus_tag="ACFM6C_001422"
     CDS             complement(5795..6667)
                     /gene="accD"
                     /locus_tag="ACFM6C_001422"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HFC6158870.1"
                     /translation="MSWLDKILPPKIKNRSKDGSSNVPEGLWHKCPSCSATVYSTELQ
                     QNNQVCPKCNHHNPLSARQRLNLLLDEDGREEVAGNVKPIDPLKFKDSKKYPDRLGAA
                     RKLTGEDDALVVMKGMMNGLPVVVAAFEFRFIGGSMGSVVGERFVQGIRRAVADNCPF
                     VCVAASGGARMQEGVNSLMQMTKTSAALHLLTEKRLPFISVLTDPTMGGVSASFAFLG
                     DVVLAEPNALIGFAGPRVIEQTVRETLPEGFQRAEFLLEKGAIDQIVDRRDMKRRISD
                     LITLLCRQDKVSAA"
     gene            complement(6704..7489)
                     /gene="trpA"
                     /locus_tag="ACFM6C_001423"
     CDS             complement(6704..7489)
                     /gene="trpA"
                     /locus_tag="ACFM6C_001423"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HFC6158871.1"
                     /translation="MSRIRQAFAALDGGKALIPYITVGDPDIRTTLALMHGMVANGAD
                     ILELGVPFSDPMADGPVIQRAAERALANGISLRDVLDVVRKFRETDTQTPVVLMGYLN
                     PVHKMGYREFAQEAAKAGVDGVLTVDSPVETIDPLYRELKDNGVDCIFLIAPTTTEDR
                     IKTIAELAGGFVYYVSLKGVTGAASLDTDEVSRKIEYLHQYIDIPIGVGFGISNAESA
                     RKIGRVADAVIVGSRIVKEIENNAGNEAAVVGALVKELKDAVR"
BASE COUNT         1835 a         2340 c         1835 g         1638 t
ORIGIN      
        1 tgcacagata atatcaaccc gtttttaaca aagatattcc cgattgaaac aaaatgccgt
       61 ctgaaacctg ttcggacggc atttgcgtaa agttcagcaa gaaaaactac aaacccagct
      121 cgcgcaggaa gcggatgtcg tccgcccaac cggatttgac tttgacccac actttcaaaa
      181 acactttggt atcaaacagt ttttccatat ccaaccgcgc ttcggtggaa attttcttca
      241 aacgctcccc gcctttgccg attaaaatcg ccttttggct ttccttatcg accaaaacgg
      301 cgatatagat gcggtttaaa ccgtcttcct cttcaaactg ctccacttcg acgttcatcg
      361 cataaggcaa ttcctcgccc aaatagcgga acaatttttc acgcacgatt tccatcgcta
      421 aaaaacgcgc cgatttgtcc gtaaccatgt cttcgggata catcggcacg ctttcgggca
      481 gatacggttt aatcagctcc aacaggttgg caatccgcaa tccgtgtttc gcgctgactg
      541 cctccgctgc cgcaaattca aattcggcgc gcacctgggc aacaaacgcc tccaacgcgt
      601 aacggtcttt cgccttgtcc ttgtcaattt tgttgaccac taaaacgacc ggcgtgtgct
      661 tgggcagttg tttcaacacg actcggtcgg catcggtaaa gcgcatcgcc tccacgacga
      721 aaaccacggc atccacaccg ccgagtgcct cggtaacgtt ttgattcaaa cggtcgttga
      781 gcgcgttgcg gtggtcggtt tgaaaaccgg gcgtatcgac aaacacaaac tgcgcggtat
      841 cgtcggtata aatccccgtt acgcggttgc gcgtcgtctg cgcctttttg ctggtgatgc
      901 tgattttctg accgatgaga tggttcatca gcgttgattt gcccacgttc ggacgaccga
      961 caatcgccac gaagccgcaa cggtatccgt cggcggcacg ttcccctgca aggaaggttt
     1021 caatatccat attcgctttc atatccatat ttcagacggc atattcacgc gccgcctcat
     1081 ttctttttct tcttcagcgg cagcttcttt tccagccatt tcaaagcctc tttcgccgct
     1141 tcctgctccg ccgccttgcg gctcgtccct ttggcacggc acacgaaacc cagttcgccc
     1201 aaatcgcagg aaatgacaaa catactgtcg ttggcataac cgatttgctc ttcgatacgg
     1261 tatttcggca aggcgaaacg gcgcgcctgc aacgcctcct gcaaagcagt tttgccgtct
     1321 tttgcctgat tttgaaaatc ggcgcgccgg acgcgatcgg caaacaaatg gcgcaccacc
     1381 ttttccgccg tgttgaaatc ggcatcgaag ctgacggcag caaacatcgc ctccatcgcg
     1441 tctgccagta tcgaaggccg tctgaagccg ccgctcttca actcgcccgc ccccaagtac
     1501 aggccgtcgc cgacattcat ttccgccgcc atttccgcca gcacgccctc attgaccaga
     1561 cttgcccgca accgcgacaa ctcgccctcg gtcaacttcg gaaacgcgtc aaacagcatc
     1621 cgcgccaccg tataattcaa aatcgaatca ccgacaaact cgaaccgctc gttgtgcttc
     1681 gcatgatggc tcctgtgcgt caaagcctgc cgcaaaagcg aaatatcgcg gaacgcgtag
     1741 cccagtttct tctgtatcgc cgcgtgtgcc tgctgtttca aaacatcgtc tttcattacc
     1801 gtcttccgca aaaaacagcc cgaatgcgtt tccatactcc aaaaatacag aaacacctta
     1861 aggctgcaaa cggcgcacat tgtaccacca aaccgccgcc gtctgccgac aacgcacgaa
     1921 tcgtggtaaa atccgtaagt tttcccccaa cgtattcccg taatgaacgc atttgcacaa
     1981 gcactttcct cggcactcga ccgctgtatc gccaccaaca ccgtcgccaa acaaaaccgg
     2041 cccgtcggct tcctctaccg cgaagccccc gtttttgaaa acgacagcgg ctggcgtttc
     2101 ttcagcggcg acgagaccga cgaatacacc gacgatccgg acaacttcag catcgtcagc
     2161 ctcgccgaca tcgccaaaac caaccctgaa accgccgcac tgctttccca acccgaaggc
     2221 agcgcatggg agcttgccga agacggcaca ttccaaaccg tcgccgactg gcagccgcaa
     2281 gactgaaacc ttcagacggc attccgaaac ctccgaatac caaaggacac ccaatgaaca
     2341 ccatcgcccc caacctcgac ggcaaacacc tccgcatcgg catcgtacag gcacgcttca
     2401 ccaacgaaat cggcagcgaa atgctcaaag tctgctgccg caccctccaa gaattgggcg
     2461 tggcagacga aaacattacc gtcgccaccg tacccggcgc gcttgaaatt cccatcgcgc
     2521 tgatgaactt tgcctcttcc gaaaagtttg acgcactgat tgccatcggc gtcgtcatcc
     2581 gtggcgaaac ctaccatttc gagctggttt ccaacgaatc cggagcaggc gtcagccgcg
     2641 tcgcactcga ctacaatatc ccgattgcca atgccgtcct aaccaccgaa aacgacgcgc
     2701 aggcaatcga acggattgaa gaaaaagcct cggatgccgc caaagtcgcc gtagaatgcg
     2761 ccaacctcgt caaccttctg ctcgaagaac agtttgaaga cgaagaataa caaacagggc
     2821 gtacaccgat gcgccctttc cgtttcagac ggcataccgt gccgcccaac cgtttcaagg
     2881 aaaaattatg aaaacagccc gccgccgttc ccgcgagctt gccgtacaag ccgtttacca
     2941 atcccttatc aaccgcaccg ccgcgcccga aattgctaaa aacatccgcg aaatgcccga
     3001 ctttgccaaa gcggacgaag aattgttcaa caaacttttc ttcggtacgc aaaccaacgc
     3061 agcggactac atccaaaaaa tccgccccct gctcgaccgc gacgaaaaag acctcaatcc
     3121 catcgaacgc gccgtcctgc tgaccgcctg ccacgagctg tccgccatgc ccgaaacgcc
     3181 ctaccccgtc attatcaacg aagccatcga agttaccaaa accttcggcg gcacggacgg
     3241 gcacaaattc gtcaacggca tcctcgacaa actcgctgcc caaatccgcc ccgacgagcc
     3301 taaacgccgt tgacactccg gaaaatccga attggaaaat acataaatgc cgtctgaaaa
     3361 acctttcaga cggcattttg cttgaccgtt caatcaatac tgtaccgtcc agccgatttc
     3421 gccgcccgcg cgcatcggga caagttcgcc gtcgccatag ggaacacttg cggggacggt
     3481 ttggctttgt ttgacgaggg tgatcgtgcc ggcgttttcc ggaatgccgt aaaaccttgc
     3541 gccatttttc gaggcaaagg cttcgagttt gtccaacgcg cctgcttttt caaacacttc
     3601 ggcgtaaagc tcgacggcgg tcatcgcgct gaacataccg gcgcagccgc aggcgttttc
     3661 tttggcggac ttggcgtgcg gcgcggagtc ggtgccgagg aagaatttgt gcgccttctc
     3721 gccggtaacg gcggcaacca atgcctgacg gtgggtttcg cgtttgagta cgggcaggca
     3781 gaaatgatgg gggcgcacgc cgccgaccaa gaggtcgttg cggttgagca ggaggtgttg
     3841 cggggtaacg gtggcggcta cgttgtcgcc tgcttccaaa accaggcggg cggcttcggc
     3901 ggtggtgatg tgttcgaaca cgactttaag attcggcact tgcgccaaaa cgggtttcat
     3961 cacgcgcccg ataaaggcgg cttcgcggtc gaagatgtcg atttcggggt cggttacttc
     4021 gccgtgaacg aggaacaaaa tgccctgttt cgccatttct tccaacacgg ggatgagctt
     4081 gaacaggtcg gttacgccgg aatcggaatt ggtggtcgcg ccggcagggt agagtttgaa
     4141 ggcgacgatg ccggcggctt tggcttcgcg tacaagttcg ggcgtggcgt tatcagtcaa
     4201 ataaagcgtc atcaacggct caaacgcgct gccttcgggc aacgccgcca taatgcgcgc
     4261 tttgtaggca agcgcgtcgg ctacactgac gacaggcggt ttgaggttgg gcataatgac
     4321 ggcgcgcccc atttggcggg cggtataagg ggcaacggct ttgagcgcgt cgccgtcgcg
     4381 caggtgcagg tgcatatcgt cggggcggat aatggtcagg gtttgcatgg ttgttccttt
     4441 ttaggttttg gctgcgtttg aatacccggt cgattccatc cgtttgccgg gggaaagccg
     4501 gttattccgt ccggtcggaa accggttcca ttggatgaaa ggcattttgt ccgactgatt
     4561 gggttgcatc aacggaatct tcaaacacag cctttagatt ttgattgtgc ttgggttttg
     4621 cttctttgcc gacggcaagg cggttaacag ccattccgga acaaatcggc ggcgatacgc
     4681 ccgaaatgcc gacactgcac gccggacggt ttgtttttga aacggcacgc ggcacatacg
     4741 atattcaaaa acaacgccgt cgggcgggac atccgcattt cagacggcat ttatttgtgc
     4801 ttgacgacca gcgtgaacac gccgtcctgt tcggaagcat ccaacagcac atgaccggtt
     4861 tggcggcaaa aagcctcaaa atcccccggt gcgccgccgt cggttgccag aacggtcaac
     4921 acgtcgccct gctgcatttg cgccaaagcc tttttggcac gcaaaatagg caaagggcat
     4981 ttcagcccgg ttacgtctaa agtttcgctg ttcatcgttt gtaccgttta aaaaatggga
     5041 atcgggggga gattataccc cagttgcttg cagccccctt tgccaaccca taaaataacg
     5101 ccgttttcaa tttggagaaa cttatgcgcc gcaccaccct cctgctgctc gcactcgccg
     5161 ctggcacgtc ccttgctgcc ggcttcagcc aaaaagacac gccgatcaac acccgctacc
     5221 gcgaaacgcc cgaagaagcc gccgcccgcg aatttaaaga acataccgcc aaactgccgc
     5281 cgctgcccga tacgcactcg gacggctggt tcgacattta tgtggatgaa aattacggca
     5341 aacagccgaa aatcctgctc gacagcctgc aaattatgcc cgcgcccgac ggcagcatcc
     5401 gctacattct caatatccgc tccgacaaag gctacgacaa cctgactgcc gaaggcatat
     5461 tctgcgcccg cttctccatc aggttcggca acggcaaacc ttcctcctat aaagtgttcg
     5521 gctacggcga cacggtcaac cgccgctgga tacagccccg aaacgccgaa tggaaaccga
     5581 taggcggtac attaagccgc aacgacgcac tgcgcaccgt cctgtatcag gcattctgcg
     5641 agggcggtgt acccgccgac acgaaaggtt tggtacaacg cctgaaagaa cgtgccggac
     5701 gctatgcccc gtcgataaag ccgcacaaca aataaccaga cacaaaaata ccgtctgaaa
     5761 catcggtttc agacggtatt cgattcatca gccatcaagc ggcggaaact ttgtcctgac
     5821 ggcacaacag cgtaatcaaa tcactgatgc gccgcttcat atcgcggcgg tcgacaatct
     5881 ggtcgattgc gcctttttcc agcaggaact cggcgcgttg gaagccttcc ggcagcgttt
     5941 cgcgcaccgt ctgctcaatc acgcgcggac cggcaaaacc gatcagcgcg ttcggttcgg
     6001 caagcacgac atcgcccaaa aatgcgaagc tggcggatac gccgcccata gtcggatcgg
     6061 tcaacaccga tataaatggc aggcgttttt ccgtcagcaa atgcagcgcg gcactggttt
     6121 tcgtcatctg catcaatgag ttcacaccct cctgcatacg cgcaccgccg gaagccgcca
     6181 cacagacgaa cggacaattg tcggcaaccg cccgacggat accttgtacg aatcgttcgc
     6241 ccacaaccga acccatcgaa ccgccgataa agcggaattc aaacgcagca acgacgacgg
     6301 gcaggccgtt catcatcccc ttcatcacca ccagcgcgtc atcttccccg gtcagcttgc
     6361 gtgccgcccc caaacggtcg ggatattttt tactgtcttt aaacttcaaa ggatctatcg
     6421 gtttgacatt tccggcaact tcctccctgc catcctcatc caaaagcagg ttcaggcgtt
     6481 gtcgtgccga caacggattg tggtggttgc atttcggaca aacctgattg ttctgctgca
     6541 actcggtcga ataaacggtt gccgaacaag acggacattt gtgccacaaa ccctcgggaa
     6601 cattggaaga accgtctttg ctgcggtttt tgattttggg tggcaggatt ttatctaacc
     6661 agctcatgga caactcctaa aatatttaga atgcgtgaca gaatcagcgc acggcatcct
     6721 tcaactcttt gaccaaagca ccgacgaccg cagcctcgtt gcccgcattg ttttcaatct
     6781 ctttcacaat ccggctgccg acaatgaccg cgtcggcaac ccggccgatt ttgcgcgcgc
     6841 tttccgcatt gctgatgccg aaaccgacac cgatgggaat atcgatatac tgatgcaaat
     6901 actctatttt acgcgaaacc tcatccgtat ccaaacttgc cgcgcccgtt acgcccttga
     6961 gcgaaacata atagacaaat ccgcctgcca gctcggcaat ggttttaata cggtcttccg
     7021 tcgtcgtcgg cgcaatcagg aaaatacagt cgaccccgtt atccttcagc tcgcgataga
     7081 gcggatcgat ggtttcgaca ggggaatcca ccgtcaacac gccgtccaca cccgcctttg
     7141 cggcttcctg agcaaactcc cgataaccca tcttatgtac agggttcaaa tatcccatca
     7201 aaacaaccgg cgtttgcgtg tcggtttcac ggaattttct gacgacatcc aagacatcgc
     7261 gcagcgaaat cccgtttgcc aacgcccgct ccgccgcacg ctgaataacc ggcccatccg
     7321 ccatcggatc ggaaaacggc acacccaact ccaaaatatc cgcaccgttt gcaaccatgc
     7381 cgtgcatcaa tgccaaagtt gtccgaatat cggggtcgcc caccgtaata tagggaatca
     7441 atgcctttcc gccatccaaa gcggcaaaag cctgccggat tctgctcatt tgtctcttcc
     7501 atcctatcgg caaatatgcc gtaaaacaca atcagtaaat ttttcccagt ataacatttg
     7561 cggtacggat aggcgaatac ggcaaacaga aaccgcgcaa atcagagccg ccgtttgaac
     7621 gaggcggaaa taaacggcaa gcatctcg
//
LOCUS       DAXHPV010000097         7550 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.097, whole genome shotgun sequence.
ACCESSION   DAXHPV010000097 DAXHPV010000000
VERSION     DAXHPV010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7550)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7550)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7550
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.097"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            140..721
                     /locus_tag="ACFM6C_001424"
     CDS             140..721
                     /locus_tag="ACFM6C_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HFC6158872.1"
                     /translation="MEEKNDYTDAASDNRNGQEIEVGIAGAGDRILAALLNQLFTFLV
                     LLVPFAGLIAFAIKNEGRIGGSEEIFGLLLGMTSFWVGLAGILVYTVVQIYYMSRDGQ
                     SLGKKIMRIRVLKTDGRNPGFVGTVLVREIAWSVLVAIIAAVIGLAVGDNGENAINLL
                     AFLANFVLLFMVKRDRRTLYDILADTVVVKLPK"
     gene            complement(783..1637)
                     /gene="folD"
                     /locus_tag="ACFM6C_001425"
     CDS             complement(783..1637)
                     /gene="folD"
                     /locus_tag="ACFM6C_001425"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004488 - methylenetetrahydrofolate
                     dehydrogenase (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HFC6158873.1"
                     /translation="MSAQLINGKEVSQKRLQAVAEAVAQRQQDNLHMPCLAVVLVGGD
                     PASAVYVRNKKTACQKCGIKSLSYELPESTSQEELLALVDRLNADSEVDGILVQLPLP
                     KHLDSQAVLERISPDKDVDGFHPYNVGRLAVKMPLMRPCTPKGVMTLLEAYGIDPKGK
                     KAVVVGASNIVGRPQALELLLARATVTVCHSATENLTDEVAGADILVVGVGIPNFVKG
                     EWIKPGAVVIDVGINRLDDGSLCGDVEFETAKERAAMITPVPGGVGPMTIATLMENTL
                     HAASLHDA"
     gene            1860..1937
                     /locus_tag="ACFM6C_001426"
     tRNA            1860..1937
                     /locus_tag="ACFM6C_001426"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1895..1897,aa:Pro,seq:tgg)
     gene            1962..2038
                     /locus_tag="ACFM6C_001427"
     tRNA            1962..2038
                     /locus_tag="ACFM6C_001427"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1996..1998,aa:Arg,seq:tct)
     gene            2066..2141
                     /locus_tag="ACFM6C_001428"
     tRNA            2066..2141
                     /locus_tag="ACFM6C_001428"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2099..2101,aa:His,seq:gtg)
     gene            2352..2858
                     /gene="rfaE2"
                     /locus_tag="ACFM6C_001429"
     CDS             2352..2858
                     /gene="rfaE2"
                     /locus_tag="ACFM6C_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase"
                     /protein_id="HFC6158874.1"
                     /translation="MVDAWSVPDFESKICPPEALAARLALLPRPLVFTNGCFDILHRG
                     HVTYLAQARSAGAALVLALNTDASVRRLGKGGDRPINPLENRAAVAAALESVDLVTWF
                     DEDTPAALIEAVKPEILVKGGDWAADKIVGAAETLARGGQVFSIPFLHQTSTTKTLAK
                     IRAAEGGK"
     gene            2855..4633
                     /locus_tag="ACFM6C_001430"
     CDS             2855..4633
                     /locus_tag="ACFM6C_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional biotin--[acetyl-CoA-carboxylase]
                     ligase/type III pantothenate kinase"
                     /protein_id="HFC6158875.1"
                     /translation="MTVLKLSHWRVLAELADGLPQHVSQLARMADMKPQQLNGFWQQM
                     PAHIRGLLRQHDGYWRLVRPLAVFDAEGLRELGERSGFQTALKHECASSNDEILELAR
                     IAPDKAHKTICVTHLQSKGRGRQGRKWSHRLGECLMFSFGWVFDRPQYELGSLSPVAA
                     VACRRALSRLGLDVQIKWPNDLVVGRDKLGGILIETVRTGGKTVAVVGIGINFVLPKE
                     VENAASVQSLFQTASRRGNADAAVLLETLLVELDAVLLQYARDGFAPFVAEYQAANRD
                     HGKAVLLLRDGETVFEGTVSGVDEKGILHLDTGDGRQTVVSGEISLRPDDRPVSVPKK
                     REPERFLLLDGGNSRLKWAWVENGTFATVGSAPYRDLSPLGAEWAEKADGNVRIVGCA
                     VCGEFKKAQVQEQLARKIEWLPSSAQALGIRNHYRHPEEHGSDRWFNALGSRRFSRNA
                     CVVVSCGTAVTVDALTDDGHYLGGTIMPGFHLMKESLAVRTANLNRHAGKRYPFPTTT
                     GNAVASGMMDAVCGSVMMMHGRLKEKTGAGKPVDVIITGGGAAKVAEALPPAFLAENT
                     VRVADNLVIHGLLNLIAAEGGESEHT"
     gene            4746..5570
                     /locus_tag="ACFM6C_001431"
     CDS             4746..5570
                     /locus_tag="ACFM6C_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HFC6158876.1"
                     /translation="MKWLFTLLAVLNIAVFGGTVGYKLAVKATGGVPENRAVENTPPA
                     TPAADNAAASVEDTAALLKPGDILTEEQAEQLRLKKEAEQKKLREKKQREEKARREKL
                     AAEKAQAERENGAADALCAAQASLTMDEDDYHRIKGLLGKWSHVASRSVEKRTAQAKP
                     ADKTYRVVLPVSADAENQAAELSAKGFNPIPFDGALSLGVGNSRENAQALQNRLAGAG
                     FGGAHIVEHFAEADRQDDSLSVSRMTVLFTGVNAADAEEIRKITSLYGKLNLKSCK"
     gene            complement(6333..7121)
                     /locus_tag="ACFM6C_001432"
     CDS             complement(6333..7121)
                     /locus_tag="ACFM6C_001432"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990107 - thiazole synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HFC6158877.1"
                     /translation="MLTLYGETFPSRLLLGTAAYPTPEILKQSVRTARPAMITVSLRR
                     AGCGGEAHGQGFWSLLQETGVPVLPNTAGCQSVQEAVTTAQMAREVFETDWIKLELIG
                     DDDTLQPDVFQLVEAAEILIKDGFKVLPYCTEDLIACRRLLDAGCQALMPWAAPIGTG
                     LGAVHAYALNVLRERLPDTPLIIDAGLGLPSQAAQVMEWGFDGVLLNTAVSRSGDPVN
                     MARAFALAVESGRLAFEAGPVEARDKAQASTPTVGQPFWHSAEY"
     gene            complement(7335..7529)
                     /gene="thiS"
                     /locus_tag="ACFM6C_001433"
     CDS             complement(7335..7529)
                     /gene="thiS"
                     /locus_tag="ACFM6C_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HFC6158878.1"
                     /translation="MNIILNGEPAELHGTSVADLIAQTAPQKPFAVAVNTVFVPKGAY
                     AETVLNENDKIDIVRPVVGG"
BASE COUNT         1611 a         1948 c         2254 g         1737 t
ORIGIN      
        1 atgtatggcg taaaggaagc gttttaacgc cgtattggga aaatgtaaag ttctttatcg
       61 ggatttcttt aagtattggc gttttcggtg tcgtggcggt agaatcgggg tcagttaaga
      121 acaattatca ggaacggata tggaagaaaa aaacgactac accgacgcgg catccgacaa
      181 ccgcaacggg caggaaattg aagtcggaat tgccggcgca ggcgaccgga tacttgccgc
      241 gctgctgaac caattgttta cctttttggt tttgttggtg ccgtttgccg gactgattgc
      301 ttttgccatc aagaatgaag gcaggattgg cggcagtgag gaaatattcg ggctgctttt
      361 gggcatgact tccttttggg taggactggc gggcattttg gtttataccg tcgttcaaat
      421 ctactatatg agtcgggacg ggcagtcatt gggtaagaaa atcatgagaa tccgcgtgtt
      481 gaaaaccgac ggccgcaatc ccggttttgt cggcacggtt ttggtacgcg aaatcgcatg
      541 gtcggttttg gttgccatta ttgccgccgt tatcggtctt gcagtaggtg acaacggaga
      601 aaacgccatc aacctgctgg cattccttgc caactttgtc ctgctcttta tggtcaaacg
      661 cgaccgccgc acgctttacg acatactggc ggatacggtt gtcgtcaagc tgcccaaata
      721 aacggacacg gcaaaatgcc gtctgaaagc ctttcagacg gcatttttat cttcagaacc
      781 gctcaagcat cgtgcagtga agccgcgtgc agggtgtttt ccatcaatgt ggcaatcgtc
      841 atcggaccca cgccgccggg aacgggcgta atcatcgccg cccgttcttt tgccgtttca
      901 aattccacgt cgccgcacag gctgccgtcg tccaaacggt tgatgcccac atcgataacg
      961 accgcgccgg gtttgatcca ttcgcctttg acaaagttcg gaatgcccac gccgaccacc
     1021 aaaatatcgg ctccggcaac ctcgtctgtc agattttcgg ttgcgctgtg gcagaccgtt
     1081 accgttgcgc gcgccagcag cagttccaaa gcctgcgggc ggccgacgat attcgacgcg
     1141 ccgaccacga ccgctttttt ccccttcgga tcaatgccgt aagcttccaa aagcgtcatc
     1201 acgcccttgg gcgtacacgg gcgcatcagc ggcattttga ccgccagcct gccgacattg
     1261 taaggatgga agccgtccac gtccttatcc ggcgaaatac gttccaaaac cgcctggctg
     1321 tcgaggtgct tcggcagcgg tagctgaacc agaataccgt ccacttcgga atcggcattc
     1381 aggcggtcga ccagtgccag cagttcttcc tgcgatgttg attcgggcag ctcgtaagac
     1441 agtgatttga tgccgcattt ttggcaggca gttttcttgt tgcggacata aaccgcgctg
     1501 gcagggtcgc ctccgaccaa aaccacggcc aggcaaggca tgtgcagatt gtcctgttgg
     1561 cgttgcgcca ccgcttcggc aaccgcctgc aggcgttttt gcgaaacttc tttaccattg
     1621 atcagttgtg ccgacatatc cgtccttttg ttaaacaggt agaaaatgct gaaaattatc
     1681 gcattttccg tttgttttta cagcaggatg ccgaaaataa atttgccctg aaataaaata
     1741 cggctgtttg gacggattaa atattttttc aaatcaaaaa actatatttt tcatcttggt
     1801 gtcttgaaaa taaatattga cgcatctttc cctgagttgt atagttcgct tcttcaagtc
     1861 ggggcgtagc gcagcccggt tagcgcatct gctttgggag cagagggtcg tgagttcgaa
     1921 tcccaccgcc ccgaccaatc aatcagcacg aatcggcatg agcgcccgta gctcaaccgg
     1981 atagagcacc gaccttctaa gtcgggggtt acaggttcga ttcctgtcgg gcgtgccaag
     2041 aatttgattg aaaaccgttt ttatggtggc tgtagctcag ttggtagagc cccggattgt
     2101 gattccggtt gtcgtgggtt cgagccccat cagccacccc agataaaggc ccgtactttt
     2161 cggtacgggt ctttttccgt ttgcgcgtac tgtccgcgcc gtcgtaccgg tgcggcggta
     2221 tgccgtctga aagccgggcc ggtcatacgg aaaccgcttc agacggcatt tgcgccgccg
     2281 gctttgcctt tcgcatatgc ttctgtatca tgtaggtttt ctgtctttta tggtttttgt
     2341 cggagacttt gatggttgac gcttggtctg ttcctgattt tgaatcgaaa atctgtccgc
     2401 ccgaggcgtt ggcggcgcgt ttggcgttgt tgccgcgccc gctggtgttt accaacggct
     2461 gtttcgacat cctccacagg gggcacgtta cttatctggc gcaggcgcgt tcggcagggg
     2521 cggcgttggt gctggcgttg aataccgatg cttcggtgcg gcgtttgggc aagggcggcg
     2581 accgcccgat taatcctttg gagaaccgtg ccgccgttgc cgccgcgttg gaaagtgtgg
     2641 atttggtaac gtggtttgac gaggatacgc cggcggcgtt gattgaggcg gtcaaacctg
     2701 agattttggt caagggcggc gattgggctg cggataagat tgtcggtgcg gcagaaacgt
     2761 tggcgcgcgg cggtcaggtg ttttcaattc cgtttctgca ccagacttcg acaacgaaga
     2821 ctttggcaaa aatccgtgcg gcagagggcg gaaaatgacg gttttgaagc tttcgcactg
     2881 gcgggtgttg gcggagcttg ccgacggttt gccgcaacac gtctcgcaac tggcgcgtat
     2941 ggcggatatg aagccgcagc agctcaacgg tttttggcag cagatgccgg cgcacatacg
     3001 cgggctgttg cgccaacacg acggctattg gcggctggtg cgcccattgg cggttttcga
     3061 tgccgaaggt ttgcgcgagc tgggggaaag gtcgggtttt cagacggcat tgaagcacga
     3121 gtgcgcgtcc agcaacgacg agatactgga attggcgcgg attgcgccgg acaaggcgca
     3181 caaaaccata tgtgtgaccc acctgcaaag taagggcagg gggcggcagg ggcggaagtg
     3241 gtcgcaccgt ttgggcgagt gtctgatgtt cagttttggc tgggtgtttg accggccgca
     3301 atatgagctg ggttcgctgt cgcctgttgc ggcagtggcg tgtcggcgcg ccttgtcgcg
     3361 tttaggtttg gatgtgcaga ttaagtggcc caatgatttg gttgtcggac gcgacaaatt
     3421 gggcggcatt ctgattgaaa cggtcaggac gggcggcaaa acggttgccg tggtcggtat
     3481 cggcatcaat tttgtcctgc ccaaggaagt agaaaatgcc gcttccgtgc aatcgctgtt
     3541 tcagacggca tcgcggcggg gcaatgccga tgccgccgtg ctgctggaaa cgctgttggt
     3601 ggaactggac gcggtgttgt tgcaatatgc gcgggacgga tttgcgcctt ttgtggcgga
     3661 atatcaggct gccaaccgcg accacggcaa ggcggtattg ctgttgcgcg acggcgaaac
     3721 cgtgttcgaa ggcacggtca gcggtgtgga cgagaagggt atattgcatc tggataccgg
     3781 agacggcagg caaaccgtag tcagcggaga aatcagtttg cgtcccgacg acaggccggt
     3841 ctctgttccg aagaagcggg aaccggaacg ttttttgctg ttggacggcg gcaacagtcg
     3901 gctcaagtgg gcatgggtgg aaaacggcac gttcgcaacc gtcggtagcg cgccgtaccg
     3961 cgatttgtcg cctttgggcg cggagtgggc ggaaaaggcg gatggaaatg tccgcatcgt
     4021 cggttgcgct gtgtgcggag aattcaaaaa ggcacaagtg caggaacagc tcgcccgaaa
     4081 aatcgagtgg ctgccgtctt ccgcacaggc tttgggcata cgcaaccact accgccaccc
     4141 cgaagaacac ggttccgacc gctggttcaa cgccttgggc agccgccgct tcagccgcaa
     4201 cgcctgcgtc gtcgtcagtt gcggcacggc ggtaacggtt gacgcgctca ccgatgacgg
     4261 acattatctc gggggaacca tcatgcccgg tttccacctg atgaaagaat cgctcgccgt
     4321 ccgaaccgcc aacctcaacc ggcacgccgg taagcgttat cctttcccga ccacaacggg
     4381 caatgccgtc gccagcggca tgatggatgc ggtttgcggc tcggttatga tgatgcacgg
     4441 gcgtttgaaa gaaaaaaccg gggcgggcaa gcctgtcgat gtcatcatta ccggcggcgg
     4501 cgcggcaaaa gttgccgaag ccctgccgcc tgcatttttg gcggaaaata ccgtgcgcgt
     4561 ggcggacaac ctcgtcattc acgggctgct gaacctgatt gccgccgaag gcggggaatc
     4621 ggaacatact taaaaaatac accctttttc aacacggggc ggcatccgtc cgaatccgtc
     4681 cggattctgc cgcccgacag actgccgccc aggcgggcgg ggtttcaaac attgaggaaa
     4741 ttctaatgaa atggctcttc acccttttgg cggtactcaa tattgccgta ttcggcggca
     4801 cggtgggcta taaattagcc gttaaagcga cgggcggcgt gccggaaaac cgggccgtcg
     4861 aaaacacgcc ccccgcaacg cccgccgccg acaatgcggc ggcatccgtg gaggatacgg
     4921 cggcactgct caaaccgggc gacatcctga ccgaagagca ggccgagcag ttgcgcttga
     4981 aaaaggaagc ggaacagaaa aaactgaggg agaaaaaaca gcgtgaagaa aaagcccgcc
     5041 gcgaaaaact cgccgccgaa aaggcgcagg cggaacgcga aaacggcgcg gcggatgcct
     5101 tatgcgccgc gcaggcaagc ctcacgatgg acgaagatga ctaccaccgc atcaaaggac
     5161 ttttgggcaa atggtcgcac gttgccagca ggagcgtcga aaaacgcacc gcccaagcca
     5221 aacctgccga caaaacctac cgcgtcgtcc tgcccgtttc cgccgatgcc gaaaatcagg
     5281 cggcggagct gtctgccaaa ggtttcaacc ccataccgtt tgacggcgca ttgagtttgg
     5341 gtgtcggcaa cagccgggaa aacgcccaag ccctgcaaaa ccggcttgcc ggcgccggat
     5401 tcggcggggc gcatattgtc gaacactttg ccgaagccga caggcaggac gattctttga
     5461 gcgtgtcgcg tatgacggtt ttgtttaccg gcgtgaatgc cgccgatgcg gaagaaattc
     5521 gtaaaatcac gtccctatac ggcaaactga acctcaagtc ttgcaaatag gcgcgaaagc
     5581 cggacgataa acgccaaacc caccgcgaag gtgggtttgg cgtttcggtt ttgagtatct
     5641 gatatataaa aagggaatgt atgtctcgta tatgccgact ccaagtgtga aagtgaattg
     5701 tgagggaata cagtgtttaa tggttcggaa tggacgactt ccgagtggtt ttgattatac
     5761 gctaataata ataattatca ataaaaattt aaaaataaat gcggattttt tgtaatacga
     5821 tgaaaaataa acaaattaac ctgtccgccg atgtttgtga ttcgggtcgg caaactttca
     5881 ttgtgtcgga caaatcgggg tcggcagtca tagctgaggg cttcgtgcct gacggaaata
     5941 agcctgccgt gtttgaacat ccgtccgatt tggcgcggac agggttgtca ttcgggggtg
     6001 tttgagcgtg gattcgggga tgcaaaagcg gtaaaaccgt tgcggatgaa ggcttacgga
     6061 cggctttagg tatttttaag tgtattcaaa caacaacaaa acgcttcttc tattgccgta
     6121 tttagggctt gcgcggcagc ctgcacaccg tggaggccga gtgtttcgtt ggttgcggca
     6181 tcgggacggg cggcaaggtt tttcggccgg tttttccatt ttttccgaca aagccgtgat
     6241 gctggggaat ggcggtttgt ccgtttcagg ccgccgccgt tttggaccgc gatgccgtct
     6301 gaagccttca gacggcattt ttgccgcctt tttcaatatt ccgccgaatg ccaaaacggt
     6361 tgtccgactg tcggcgtgct ggcttgcgct ttgtcgcgtg cttcgaccgg tccggcttca
     6421 aatgccagcc gtccggattc gacggcgagt gcaaaagcgc gcgccatatt gaccggatcg
     6481 ccgctgcggg aaacggcggt gttcaaaagc acgccgtcaa agccccattc catcacttgt
     6541 gccgcctgtg agggcaaacc caagcccgcg tcgataatca gcggcgtgtc gggcaggcgt
     6601 tcgcgcagga cgttcaacgc gtaggcatga accgcgccca aacccgtgcc gatcggggcc
     6661 gcccacggca ttaacgcctg acagcccgcg tcgagcaggc ggcggcaggc aatcaggtct
     6721 tcggtgcaat aaggcagcac tttgaagccg tctttaatca ggatttccgc cgcttcgaca
     6781 agttggaaca catccggctg caaggtgtcg tcgtcgccga tgagttcgag tttaatccaa
     6841 tcggtttcaa acacttcgcg cgccatttgc gccgtcgtta ccgcttcctg cacactttgg
     6901 cagcctgccg tgttcggcag gacgggaacg ccggtttctt gaagcagcga ccaaaacccc
     6961 tgaccgtgcg cctcgccgcc gcatcccgcg cggcgcagcg agacggtaat catcgcgggc
     7021 cgggcggttc ggacggattg tttgaggatt tcaggggtcg ggtaggcggc tgtgccgagc
     7081 agcagccgcg aagggaaagt ttctccgtat agggtgagca taatgggttc ctttgtatag
     7141 tggattaaca aaaaccagta cggcgttgcc tcgccttagc tcaaagaaaa cgattctcta
     7201 aggtgctgaa gcactaagtg aatcggttcc gtactatccg tactgtctgc ggcttcgtcg
     7261 ccttgtcctg atttaaagtt aatccaccat aacgttgttt tggggacagg ggtcgtctga
     7321 aaaggcaaaa ccgcctagcc gccgaccacc ggccgcacga tatcgatttt gtcgttttcg
     7381 tttaaaaccg tttccgcata cgcgcctttg gggacgaaaa cggtgttgac cgccacggca
     7441 aagggctttt gcggcgcggt ttgggcgatg aggtcggcaa cgcttgtgcc gtgaagttcg
     7501 gcgggttcgc cgtttaagat gatgttcatg gtttctcgat gtttctgtat
//
LOCUS       DAXHPV010000098         7547 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.098, whole genome shotgun sequence.
ACCESSION   DAXHPV010000098 DAXHPV010000000
VERSION     DAXHPV010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7547
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.098"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..419
                     /locus_tag="ACFM6C_001434"
     CDS             <1..419
                     /locus_tag="ACFM6C_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HFC6158879.1"
                     /translation="EAEWAGSLFGLHKSFGFLTLTVITLRIVWAVANRAKRPQSDSKA
                     AAAGHGILYLLMLAVPVIGMIRQYGSGRGPLKVFGVEVMQGSPEKIEWMANLGNTFHG
                     NLGWLLFAAVVGHVAMVVVHRVQGKDVLYRMTGRVR"
     gene            complement(454..1329)
                     /gene="rsmI"
                     /locus_tag="ACFM6C_001435"
     CDS             complement(454..1329)
                     /gene="rsmI"
                     /locus_tag="ACFM6C_001435"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HFC6158880.1"
                     /translation="MFQKHLQKASDSVVGGTLYVVATPIGNLADITLRALAVLQKADI
                     ICAEDTRVTAQLLSAYGIQGKLVSVREHNERQMADKIVGYLSDGMVVAQVSDAGTPAV
                     CDPGAKLARRVREVGFKVVPVVGASAVMAALSVAGVAGSDFYFNGFVPPKSGERRKLF
                     AKWVRAAFPVVMFETPHRIGATLADMAELFPERRLMLAREITKTFETFLSGTVGEIQT
                     ALSADGNQSRGEMVLVLYPAQDEKHEGLSESAQNIMKILTAELPTKQAAELAAKITGE
                     GKKALYNLALSWKNK"
     gene            1376..1723
                     /locus_tag="ACFM6C_001436"
     CDS             1376..1723
                     /locus_tag="ACFM6C_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HFC6158881.1"
                     /translation="MRLNHKQGEAGEDAALAFLQSQGCTLLARNWHCAYGEIDLIVKN
                     GGMILFVEVKYRKNRQFGGVAYSISPSKLLKLQRSVEYYLQQNRLTNVPCRLDAVLIE
                     GSRPPEWIQNITG"
     gene            1728..2321
                     /locus_tag="ACFM6C_001437"
     CDS             1728..2321
                     /locus_tag="ACFM6C_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008968 - D-sedoheptulose 7-phosphate
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoheptose isomerase"
                     /protein_id="HFC6158882.1"
                     /translation="MTTLQERVAAHFAESIRAKQEAEKVLVEPTVQAAELMLQCLMND
                     GKILACGNGGSAADAQHFAAEMTGRFEKERMELAAVALTTDTSALTAIGNDYGFDHVF
                     SKQVRALGRAGDVLVGISTSGNSANVIEAVKAAHERDMHVIALTGRDGGKIAAILKDT
                     DVLLNVPYPRTARIQENHILLIHAMCDCIDSVLLEGM"
     gene            2385..2993
                     /locus_tag="ACFM6C_001438"
     CDS             2385..2993
                     /locus_tag="ACFM6C_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003694442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HFC6158883.1"
                     /translation="MKLKLHTVRILTAAIFSLALSGCVSAVIGGAAVGAKSAVDRRTT
                     GAQTDDNVMALRIETTARSYLRQNNQTKGYTPQISVVGYNRHLLLLGQVATEGEKQFV
                     GQIARSEQAAEGVYNYITVASQPRSLGDITNDTWNTSKIRATLLGISPTTQARVKIVT
                     YGNVTYVMGILTPEEQAQITQKVSTTVGVQKVITLYQNYVQR"
     gene            3001..3651
                     /locus_tag="ACFM6C_001439"
     CDS             3001..3651
                     /locus_tag="ACFM6C_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158884.1"
                     /translation="MPSEPPSDGIARHPKSTIKMAKKPNKPFRLTPKLLIRVVLLICI
                     TAIGALAIGIVSTFNPNGGKTLQTEPQHTDSPRETEFWLPNGVVGQDAAQPEHHHAAS
                     SEPAQPDGTDESGSGLPSPAAPKKNRVKPQPADTAQTDRQPDDAGTQAENTLKETPVL
                     PTNVPRPEPRKETPEKQAQPKETPKEKETPKENHTKPDTPKNTPPKPHKEILDNLF"
     gene            3691..4470
                     /gene="map"
                     /locus_tag="ACFM6C_001440"
     CDS             3691..4470
                     /gene="map"
                     /locus_tag="ACFM6C_001440"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003677158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HFC6158885.1"
                     /translation="MNGIIIKTPEEIEKMRELGKLVAEALDYIGQFVKPGVTTDEIDK
                     LVYDYHVNVQGGYPAPLHYGNPPYPKSCCTSVNHVICHGIPDDKPLKEGDIINIDLTI
                     KKDGFHGDSSRMFTVGKVSPIAQRLIDVTHASMMAGIEAVKPGATLGDVGYACQQVAE
                     NAGYSVVQEFCGHGIGRGFHEAPQVLHYGKKGQGPVLKPGMIFTVEPMINQGKRHLRI
                     LNDGWTVVTKDRSLSAQWEHEVLVTETGYEILTVSPASGKP"
     gene            4625..4924
                     /locus_tag="ACFM6C_001441"
     CDS             4625..4924
                     /locus_tag="ACFM6C_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HFC6158886.1"
                     /translation="MKIFENIEDVKAIRKKTGLNQIDFWGKVGVTQSGGSRYETGRKM
                     PKPVRELLRLVHIECIDLAKVNKKDMEIAALLKKHHPDLYAELSKQTKSERKKQS"
     gene            5162..5536
                     /locus_tag="ACFM6C_001442"
     CDS             5162..5536
                     /locus_tag="ACFM6C_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HFC6158887.1"
                     /translation="MKLLTTAILSSAIALSSMAAAAGTNNPTVAKKTVSYVCQQGKKV
                     KVTYGFNKQGLTTYASAVINGKRVQMPVNLDKSDNVETFYGKEGGYVLGTGVMDGKSY
                     RKQPIMITAPDNQIVFKDCSPR"
     gene            complement(5723..7189)
                     /locus_tag="ACFM6C_001443"
     CDS             complement(5723..7189)
                     /locus_tag="ACFM6C_001443"
                     /EC_number="1.1.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate:quinone oxidoreductase"
                     /protein_id="HFC6158888.1"
                     /translation="MAEATDVVLVGGGIMSATLGVLLKELEPSWEITLIERLEDVALE
                     SSNAWNNAGTGHSALCELNYAPLGANGIIDPARALNIAEQFHVSRQFWATLVAEGKLE
                     DNSFINAVPHMSLVMNEDHCSYLQKRYDAFKTQKLFENMEFSTDRNKISDWAPLMMRG
                     RDENQPVAANYSAEGTDVDFGRLTRQMVKYLQGKGVKTEFNRHVEDIKRESDGAWVLK
                     TADTRNPDGQLTLRTRFLFLGAGGGALTLLQKSGIPEGKGYGGFPVSGLFFRNSNPET
                     AEQHNAKVYGQASVGAPPMSVPHLDTRNVDGKRHLMFGPYAGFRSNFLKQGSLMDLPL
                     SIHMDNLYPMLRAGWANMPLTKYLLGELRKTKEERFASLLEYYPEANPDDWELITAGQ
                     RVQIIKKDSEKGGVLQFGTEIVAHADGSLAALLGASPGASTAVPLMIRLMHQCFPERA
                     PSWEGRLKELVPGYGIKLNENPERADEIIAYTAKVLDI"
BASE COUNT         1950 a         2287 c         1840 g         1470 t
ORIGIN      
        1 aagaggcgga atgggcgggc agcctgttcg gcctgcacaa atctttcggc ttcctcacgc
       61 tgacggtgat tacattgcgc atcgtgtggg cagttgccaa ccgcgccaag cgtccgcaaa
      121 gcgacagcaa ggctgcggcg gcaggacacg gcattctgta tctgctcatg cttgccgttc
      181 ccgttatcgg catgatccgc caatacggca gcggccgcgg cccgttgaaa gtgttcggcg
      241 ttgaggtgat gcagggttcg ccggaaaaaa tcgagtggat ggcaaacttg ggcaacacgt
      301 tccacggcaa tttgggctgg ctgctgtttg ccgccgtcgt cggacacgtc gccatggtcg
      361 tcgtccaccg tgttcaaggc aaagacgtgc tgtaccgcat gacggggcgt gtccgttgat
      421 tccgttcgca ctatggtgcc ggtccgtccg gcatcatttg tttttccaag acagtgccag
      481 attgtacaaa gctttttttc cctcgcccgt gattttggcg gcaagctccg ccgcctgttt
      541 ggtcggcagc tcggctgtga ggattttcat gatgttttgc gcggactcgg acaagccttc
      601 gtgtttttca tcctgcgccg gataaagcac caacaccatc tcgccgcgcg attggttgcc
      661 gtcggcagac aatgccgtct gaatttcccc aaccgtgccg cttaagaacg tttcaaacgt
      721 tttcgtaatt tcgcgcgcca gcattaatcg gcgttcgggg aacagttccg ccatatcggc
      781 aagcgtcgca ccgatgcggt gcggcgtttc aaacatcacg acgggaaacg ccgcccgcac
      841 ccatttggca aacagtttcc tgcgctctcc cgatttcggc ggtacaaaac cgttgaaata
      901 aaaatcggat cccgccacac cggccacact caaagccgcc atcaccgcgc ttgcgccgac
      961 aacagggaca actttaaacc cgacctcacg cacgcggcgg gcgagtttcg cgcccgggtc
     1021 gcacacggcc ggcgtacccg catcggaaac ctgtgccaca accatgccgt ctgaaagata
     1081 gccgacaatc ttgtccgcca tctgccgttc gttgtgttcg cgcacgctga caagtttgcc
     1141 ctgaatgccg tacgcgctca aaagctgcgc ggtaacgcgc gtgtcttcgg cacagatgat
     1201 gtccgccttt tgcaataccg ccaaagcgcg cagggtaatg tccgccaaat tgccgatggg
     1261 cgtggcaacc acgtataatg tccctccgac gacgctgtcg gaggctttct gcaagtgttt
     1321 ctgaaacata aaaaatgccg tctgaaaaac agacattata aaggttaaac tgattatgcg
     1381 cctaaaccac aaacagggcg aggcaggcga agatgccgcg cttgccttcc tccaatccca
     1441 aggctgcaca ctgcttgccc gcaactggca ctgcgcctac ggcgaaatcg acctgattgt
     1501 caaaaacggc ggcatgattc tgtttgttga agtaaaatac cgcaaaaatc ggcaattcgg
     1561 cggtgtcgca tacagcattt ccccatccaa attattgaaa ctgcaacgaa gtgtagagta
     1621 ttatctgcaa cagaacaggt tgacaaacgt accgtgccgc ctcgacgcgg tactcatcga
     1681 aggcagccgc ccgcccgagt ggatacagaa tattacaggt tgacgatatg acgacattac
     1741 aagaacgcgt tgccgcccat tttgccgaaa gcatccgtgc caagcaagaa gccgaaaaag
     1801 tactggtcga gccgaccgta caggctgccg agctgatgct gcaatgcctg atgaatgacg
     1861 gcaaaatcct ggcgtgcggc aacggcggtt cggctgccga cgcacagcac ttcgccgccg
     1921 aaatgaccgg gcgttttgaa aaagaacgta tggaactcgc cgccgtcgcg ctgaccaccg
     1981 acacctccgc gctgaccgcc atcggcaatg actacggctt cgaccacgtc ttcagcaaac
     2041 aagtacgcgc cctcggacgc gccggcgacg ttctcgtcgg catttccact tccggcaatt
     2101 ccgccaacgt catcgaagcc gtcaaagccg cacacgaacg cgatatgcac gtcatcgccc
     2161 tgaccggccg cgacggcggc aaaatcgccg ccatactcaa agacaccgac gttttactca
     2221 acgttcccta tcctcgaact gcccgtattc aggaaaacca catcctgctg atacacgcca
     2281 tgtgcgactg tatcgactcc gtactgctgg aaggaatgta acccttttca gacggcatgg
     2341 cgcaaagcaa tgccgtctga aacgcccaag aaaggaagcc cccgatgaaa ctcaaactgc
     2401 acaccgtccg catcctgacc gccgccattt tcagccttgc ccttagcggc tgcgtcagcg
     2461 cagtaatcgg cggtgcggcg gtcggcgcga aatccgccgt cgaccgccgc accaccggcg
     2521 cgcaaaccga cgacaacgta atggcgttgc gtattgaaac caccgcccgc tcctacctac
     2581 gccaaaacaa ccaaaccaag ggctacacgc cccaaatctc cgtcgtcggc tacaaccgcc
     2641 acctgctgct gctcggacaa gtcgccaccg aaggcgaaaa acagttcgtc ggtcagattg
     2701 cacgttccga acaggccgcc gaaggcgtgt acaactacat taccgtcgcc tcgcaaccgc
     2761 gctccctcgg cgacatcacc aacgacacct ggaatacctc caaaatccgc gccacgctgc
     2821 tgggcatcag ccccaccacg caggcgcgcg tcaaaatcgt tacctacggc aacgtaacct
     2881 acgttatggg catcctcacc cccgaagaac aggcgcagat tacccaaaaa gtcagcacca
     2941 ccgtcggcgt acaaaaagtc atcaccctct accaaaacta cgtccaacgc tgactcggca
     3001 atgccgtctg aaccgccttc agacggcatt gcccgacacc ccaaaagcac aatcaaaatg
     3061 gcaaaaaaac cgaacaaacc cttcaggctg acccccaaac tcctgatacg cgtcgtattg
     3121 ctcatctgta tcaccgccat cggcgcattg gcaataggca tcgtcagcac attcaacccg
     3181 aacggcggca aaaccctcca aaccgaaccg caacacaccg acagcccccg cgaaaccgaa
     3241 ttctggctgc caaacggcgt agtcggacaa gatgccgccc aacccgaaca ccaccacgcc
     3301 gcctcatccg aacccgcaca gccggacggc acagacgaaa gcggcagcgg actgccgtcc
     3361 cctgccgcac ccaagaaaaa ccgggtcaaa ccgcaacctg ccgacacagc tcaaaccgac
     3421 aggcagccgg acgacgccgg aacacaagct gaaaacacac tcaaagaaac ccccgtactg
     3481 cccacaaacg tcccccgtcc cgaaccccga aaagaaacac ccgaaaaaca ggcgcagccc
     3541 aaagaaacac ccaaagaaaa agaaacgccc aaagaaaacc ataccaaacc ggacaccccg
     3601 aaaaacacgc cgcccaaacc ccataaagaa attctcgaca acctcttctg acccggcacg
     3661 gcaggcacac ccgcaatcca aggaagcatt atgaacggca tcatcatcaa aacccccgaa
     3721 gaaatcgaaa aaatgcgcga gctgggcaaa ctcgtcgccg aagccctcga ctacatcgga
     3781 caattcgtca aacccggcgt aaccaccgac gaaatcgaca aactcgttta cgactaccac
     3841 gtcaacgtcc aaggcggcta tcccgccccc ctgcactacg gcaacccgcc ctaccccaaa
     3901 tcctgctgca cctccgtcaa ccacgtcatc tgccacggca ttcccgacga caagccgctc
     3961 aaagaaggcg acattatcaa catcgacctc accatcaaaa aagacggctt ccacggcgac
     4021 tccagccgta tgtttaccgt cggcaaagtc tcccccatcg cccaacgcct gatcgacgta
     4081 acccacgcct ccatgatggc gggcatagaa gccgtcaaac ccggcgcgac actgggcgac
     4141 gtaggttacg cctgccaaca ggttgccgaa aacgccggct attccgtcgt acaggaattc
     4201 tgcggacacg gcatcgggcg cggtttccac gaagccccgc aagtgttgca ctacggaaaa
     4261 aaaggacagg gccccgttct aaaaccgggt atgattttta ccgtcgaacc gatgatcaac
     4321 caaggcaaac gccacctgcg tatcctcaac gacggctgga cggtggttac caaagaccgc
     4381 tccctctccg cccaatggga acacgaagtc ttggtgaccg aaaccggcta cgaaatcctc
     4441 accgtcagcc ccgcctccgg caaaccctga aaccggacgt atccgcccca taaaaacaaa
     4501 caatgccgtc tgaaagaaac ggcagatatg atatataata taaaaacagg cttgacccgg
     4561 cacattacga aaacaaagca aatcggaatt tgccccgcaa ccagacaaac ttaaaggaag
     4621 ttttatgaaa atatttgaaa atatagaaga tgttaaagcc atccgtaaaa agaccgggct
     4681 gaaccagata gacttctggg gcaaggtcgg cgttacccag tctggaggct cgcgctacga
     4741 aaccggccgc aaaatgccca aacccgtacg cgaactgctc cgcctcgtcc atatcgaatg
     4801 catcgatttg gcgaaagtca acaaaaaaga tatggaaatc gccgccctgt tgaaaaaaca
     4861 ccatcccgac ctgtatgccg aattgtccaa acagaccaag tccgaaagaa aaaaacaaag
     4921 ttaaaccgca acctccggat gcccgaaggt ttttcatttc cgaaaaacgc aaacaatgcc
     4981 gtctgaaaca ccggacaggc cgccgtatcc cgcctgccgc ccctgcctca aaccgccgaa
     5041 ccgcccgaac ccgccttttt acaaacttta tccaatttcc tgtttatttc aggatacgcc
     5101 gacattagaa tgtcaaacag ctcgaaacgg gcaaactcca catccatcca aaggaataaa
     5161 aatgaaactt ctgaccaccg caatcctgtc ttccgcaatc gcgctcagca gtatggctgc
     5221 tgctgccggc acgaacaacc ccaccgttgc caaaaaaacc gtcagctacg tctgccagca
     5281 aggtaaaaaa gtcaaagtaa cctacggctt caacaaacag ggcctgacca catacgcttc
     5341 cgccgtcatc aacggcaaac gcgtgcaaat gcctgtcaat ttggacaaat ccgacaatgt
     5401 ggaaacattc tacggcaaag aaggcggtta tgttttgggt accggcgtga tggatggtaa
     5461 atcctaccgc aaacagccca ttatgattac cgcacctgac aaccaaatcg tcttcaaaga
     5521 ctgttcccca cgttaatcag gcaacaaaaa acagcgtttt cagaaatgaa aacgctgttt
     5581 tttgactgtt ccattattca caaaagggaa aaaacgatta cctgccccgt gtaccaaaac
     5641 ctgccctgcc ggatgaaggg cataaccggc agggacggca tcaacaccat atgggggtac
     5701 ggcttttctt gaaagattcg gcttaaatat ccaacacttt cgcggtatag gcgataattt
     5761 catccgccct ttcagggttt tcgttcaact tgatgccgta acccggtacc agctctttca
     5821 gacgaccttc ccaagacggg gcgcgctcgg ggaagcattg gtgcatcagc cggatcatca
     5881 gcggcacagc ggtcgatgcg cccggcgacg cgcccagcaa tgcggcgagt gagccgtcgg
     5941 cgtgggcgac aatctccgta ccaaactgga gcacgccgcc tttttcggag tcttttttaa
     6001 tgatttggac gcgttgccct gcggtgatga gttcccagtc gtcggggttt gcctcggggt
     6061 agtattccag cagggaggcg aagcgttctt ctttggtttt acgcaattcg cccagcaggt
     6121 atttggtcag cggcatattc gcccagccgg cgcgcagcat aggatagaga ttgtccatat
     6181 ggatggacag cggcaaatcc ataagcgagc cttgcttgag gaagttggaa cggaagcctg
     6241 cgtaagggcc gaacataagg tggcgtttgc cgtccacgtt gcgtgtgtcg aggtgcggga
     6301 cggacatcgg cggcgcgccg acggaagcct gcccgtacac tttggcgttg tgttgttcgg
     6361 cggtttcggg gttgctgttg cggaagaaca ggccggacac ggggaagccg ccgtagcctt
     6421 tgccttcggg gatgccggat ttttgcagca gggtcagcgc gccgccgccc gcgccgagga
     6481 agaggaagcg ggtacggagg gtgagctgcc cgtcggggtt gcgggtatcg gcggttttga
     6541 gcacccacgc gccgtcggat tcgcgtttga tgtcttcgac gtggcggttg aactcggttt
     6601 ttacgccctt gccctgcaaa tatttcacca tttggcgcgt cagccgtccg aaatcgacat
     6661 ccgtaccttc ggcggagtag ttggcggcga cgggttggtt ttcgtcccgg ccgcgcatca
     6721 tcagcggagc ccaatcggaa attttgttcc gatcggtgga aaattccata ttttcaaaaa
     6781 gtttttgggt tttaaacgcg tcataacgtt tttgaagata agaacaatgg tcttcattca
     6841 tcaccaaaga catatgcggc acggcattga tgaaggaatt gtcttccaac ttgccttccg
     6901 cgaccagcgt cgcccaaaac tggcggctga catgaaactg ttcggcaata ttgagggcgc
     6961 gcgccggatc gataatccca tttgcaccca acggcgcata gttcaattca cacagcgcgg
     7021 aatgccccgt gccggcgttg ttccacgcgt ttgacgattc caacgccaca tcttccaagc
     7081 gttcaatcag ggtgatttcc caagacggtt cgagttcttt gagcaaaacg cccaaagtcg
     7141 cgctcataat gccgccgccc accaagacaa cgtctgtcgc ttcagccatg gtttactcct
     7201 aaaaaacagg catcttctgc ccttatggtt atttgccgta ctacaaacgc ctgaatcgca
     7261 aaagcagggg aaaccggcaa tggtgtgtgt ccgagtatgc tgtttcgggg ttggaatgcg
     7321 ttgcaagcat ggcttccgac accgcttcag gggcttgtaa tatgttatcg tgaatgtagt
     7381 ggattttact gggaaatgca aagtttttct gtcgcccgcc aagtcgggaa actgcgaaat
     7441 gaaaaataaa aatagttatt tatctatata tatcaaattt ttaatagata aaaaatcaaa
     7501 attgtttata tattaatttt taaaagattg tcagcatatt gcgttaa
//
LOCUS       DAXHPV010000099         7380 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.099, whole genome shotgun sequence.
ACCESSION   DAXHPV010000099 DAXHPV010000000
VERSION     DAXHPV010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7380)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7380)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7380
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.099"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(86..445)
                     /gene="rnpB"
                     /locus_tag="ACFM6C_001444"
     ncRNA           complement(86..445)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="ACFM6C_001444"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(524..1627)
                     /gene="prfB"
                     /locus_tag="ACFM6C_001445"
     CDS             complement(524..1627)
                     /gene="prfB"
                     /locus_tag="ACFM6C_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HFC6158889.1"
                     /translation="MEAEVINQLNNTLNDLEKRSEDIRVYMDYQGKKDRLEEVIGLSE
                     DPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVEENDEEGFTAVQ
                     EDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDWAGMLFRMYSRYAER
                     KGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRYSPFDSNNKRHTS
                     FASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRITHEPTGIVVQC
                     QNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWGSQIRSYVLDSSR
                     IKDLRTGYEVGNTKAVLDGDLDGFIEASLKQGV"
     gene            complement(1730..2623)
                     /locus_tag="ACFM6C_001446"
     CDS             complement(1730..2623)
                     /locus_tag="ACFM6C_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HFC6158890.1"
                     /translation="MVTFSKIRPLLAIAAAALLAACGTAGNNAARKLVQTAKPAAVVG
                     LALGGGASKGFAHVGIIKVLKENGIPVKVVTGTSAGSIVGSLFASGMSPDRLELEAEI
                     LGKTDLVDLTLSTSGFIKGEKLQNYINRKVGGRQIQQFPIKFAAVATDFETGKAVAFN
                     QGNAGQAVRASAAIPNVFQPVIIGRHTYVDGGLSQPVPVSAARRQGANFVIAVDISAR
                     PGKNISQGFFSYLDQTLNVMSVSALQNELGQADVVIKPQVLDLGAVGGFDQKKRAIRL
                     GEEAARAALPEIKRKLAAYRY"
     gene            2966..3415
                     /locus_tag="ACFM6C_001447"
     CDS             2966..3415
                     /locus_tag="ACFM6C_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HFC6158891.1"
                     /translation="MKIGTTWQTASAMLVLRLFAAYEFLESGLQKWNGENWFSEINDQ
                     FPFPFNLLPDALNWNLAMYAELLLPVLLLLGLATRLSALGLMVVTAVAWAAVHAGSGY
                     NVCDNGYKMALIYIVVLIPLLFQGAGGWSLDTLLKKRFCPQCRLKQD"
     gene            3489..3797
                     /locus_tag="ACFM6C_001448"
     CDS             3489..3797
                     /locus_tag="ACFM6C_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158892.1"
                     /translation="MNKNIAAALAGALSLSLAAGAVAANKPASNATGVHKSAHGSCGA
                     SKSAEGSCGAAGSKAGEGKCGEGKCGATVKKTHKHTKASKAKAKSAEGKCGEGKCGSK
                     "
     gene            3913..4755
                     /locus_tag="ACFM6C_001449"
     CDS             3913..4755
                     /locus_tag="ACFM6C_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 domain-containing protein"
                     /protein_id="HFC6158893.1"
                     /translation="MIQHAGLGYRRDLAEDFLSLSENSPICFIEAAPENWLKMGGWAR
                     KQFDRVAERLPLALHGLSMSLGGQAPLDTDLIDGIKEMMRRYDCTFFSDHLSYCHDGG
                     HLYDLLPLPFTEEMVHHTARRIREVQDRLGCRIAVENTSYYLHSPLAEMNEVEFLNAV
                     AREADCGIHLDVNNIYVNAVNHGLLSPEAFLKNVDADRVCYIHIAGHDVETPELLIDT
                     HGAAVLPTVWDLLELAYAKLPTIPPTLLERDFNFPPFAELEAEVAKIADYQTRAGKEC
                     RRAA"
     gene            4745..5491
                     /locus_tag="ACFM6C_001450"
     CDS             4745..5491
                     /locus_tag="ACFM6C_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2063 domain-containing protein"
                     /protein_id="HFC6158894.1"
                     /translation="MQPETSAQYQHRFAQAIRGGEAADGLPQDRLNVYIRLIRNNIHS
                     FIDRCYTETLQYFDSEEWSRLKEGFVRDAHAQTPYFQEIPGEFLQYCQSLPLSDGILA
                     LMDFEYTQLLAEVAQIPDIPDIHYSNDSKYTPSPAAFIRQYRYDVTDDLHEAETALLI
                     WRNAEDDVMYQTLDGFDMMLLEIMGSSALSFDTLTQTLVEFMPEDDNWKNILLGKWSG
                     WTEQRIIIPSLSAISENMEGNSPGQNHLSA"
     gene            5513..6100
                     /locus_tag="ACFM6C_001451"
     CDS             5513..6100
                     /locus_tag="ACFM6C_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HFC6158895.1"
                     /translation="MPLPDLTDAELIESRKLLLHFARLQLPDHPDLAEDLVQETLLSA
                     YSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQRKVFTTLDDELLDEAFESHFSQN
                     GHWTPEGQPQHWNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQ
                     MCGISTSNYHTIMHRARESLRQCLQIKWFNQENPK"
     gene            6106..6285
                     /locus_tag="ACFM6C_001452"
     CDS             6106..6285
                     /locus_tag="ACFM6C_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HFC6158896.1"
                     /translation="MKKCRDIALLLSKHQDRETTPGEKISIYTHLLFCPHCREYKRQL
                     QTIKISLAKTTRTSK"
     gene            6517..6957
                     /locus_tag="ACFM6C_001453"
     CDS             6517..6957
                     /locus_tag="ACFM6C_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-adhesin E family protein"
                     /protein_id="HFC6158897.1"
                     /translation="MIKETLMRPIFLSFVLLPILITACSTPDKSARWENIGTISNGNI
                     HTYINKDSVRKNGNLMIFQDKKVVTNLKQERFANTPAYKTAIAEWEIHCNNKTYRLSS
                     LQLFDTKNTEISTQSYTASSLRPMSILSGTLTEKQYETVCGKKL"
BASE COUNT         1906 a         1956 c         1668 g         1850 t
ORIGIN      
        1 gttaatccac tataaaaaca caacctaaat aaaaatgccg tctgaaccgt atttcaggtt
       61 tcagacggca tttgcgtgtc ggatgcacac cggacgggcg gtaagccggg ttctgtctcg
      121 gacagtcatt cctctaggca taccgttgcc ggtatgctca agcaacctac ccgaacgctc
      181 ggcgggcagc gtcattgcgt tctgtttggt cttgctccga atggggtttg gcctgccgca
      241 tattgttacc aaatgcgcgg tgcgccctta ccgcaccttt tcacccttgc ctgtactgcc
      301 aaagcagcca tcggcggttt tgctttctgt tccactttcc gtcgcgttac cgcgcccggc
      361 cgttaaccgg cattctaccc tgcggagccc ggactttcct ccccgtatgc cttacgcgat
      421 acgcggcgac tgtctgcccg tcccgtgtgc ggcgcggatt ataacacgaa acgcaaaaat
      481 gccgtctgaa acacaaaatg cttcagacgg catacggttc aaactacacg ccctgtttca
      541 ggctggcttc gataaagccg tccaaatcgc cgtccaatac ggctttggtg ttgcctactt
      601 cgtagcctgt gcgcaagtct ttgatgcgcg aggaatccaa aacatacgaa cggatttggc
      661 tgccccaacc tacatcggat ttaccttctt ccaacgcctg tttctcttcg ttgcgtttgc
      721 gcatttccaa ttcatacagt ttggatttca acatttccat cgcggcagct ttgttggcgt
      781 gttgcgaacg gtcgttttga cactgcacca caatccccgt cggctcgtgg gtaatacgca
      841 cggcggagtc ggttttattg atgtgctgac cacccgcacc cgatgcgcgg taggtatcga
      901 tacgcaaatc ggcggggttg atttcgattt cgatggaatc gtcgatttca gggtaaacga
      961 acacggaggc aaacgaggta tggcgtttgt tgttcgagtc aaacggcgaa tagcgcacca
     1021 agcggtgaac gccggtttcg gtacgcagca aaccataagc gtattcgcct tccacgcgga
     1081 tagtggcgcg gttgatgcct gcgatttcgc cgtcgtcttc ttcgaggatt tcgattttga
     1141 agcctttgcg ctcggcgtag cggctgtaca tacggaacag catacccgcc cagtcttccg
     1201 cttcggtacc gcccgcgccg gcggtgatgt cgataaagca gttgttcggg tcggcgggct
     1261 ggttgaacat ccgtttgaac tccaaatccg ccatctgttt ttccagcccc gccacatctt
     1321 cctgcacggc ggtaaaacct tcttcgtcgt tttcttcgac ggtcatttca atcagcatgc
     1381 ggttgtcttc gatgcccgaa gcgatgttgt cgagcgtcaa cacgatgcct tcgaggattt
     1441 tgcgctcttt gccgatttct tgggcgcgtt tcgggtcgtt ccaaagttcg gggtcttcgg
     1501 aaagaccgat aacttcttcc aatcggtctt tcttgccctg ataatccata taaacgcgga
     1561 tgtcttcgct gcgcttttcc aaatcgttca gggtattgtt gagctggttg attacttcgg
     1621 cttccatgat tcttttgttc tttcaaaatt ttaggggcgt attgtacggg attcgggtat
     1681 ttttttctat ggataaagcc ttctggaaac acgttcggac ggcatagcgt caataacggt
     1741 atgccgccag tttgcgtttg atttcaggca atgcggcacg tgctgcctcc tcgcccaacc
     1801 ggatggcgcg ttttttctga tcgaatccgc cgactgcacc caaatccaaa acctgtggtt
     1861 tgataactac atccgcctgc cccaactcat tttgcaacgc agaaacgctc attacgttca
     1921 gcgtctgatc gagataagag aagaaacctt ggctgatgtt tttgcccgga cgggcggaaa
     1981 tatcgacggc aatcacgaaa ttcgccccct gccgccgggc ggcactgacg ggcacgggct
     2041 gcgacagacc gccgtcaaca tatgtatgcc tgccgatgat aacgggttgg aacacattgg
     2101 gaatggcggc ggaagcgcgc acagcctgcc cggcattccc ctgattgaaa gcgacggcct
     2161 tgccggtttc aaaatcagta gcaacggcgg caaatttgat gggaaactgc tgaatctgcc
     2221 tgccgccgac ttttcggttg atgtaatttt gcagcttttc gcctttgata aaaccactgg
     2281 tggacaaggt taaatcgacc aaatcggttt tgcctaaaat ttcggcttcc aattcgaggc
     2341 ggtcgggcga catacccgat gcaaaaaggc tgccgacaat cgaacctgcc gatgtaccgg
     2401 taaccacctt cacaggaata ccgttttctt tcaaaacctt aataatacct acatgggcaa
     2461 atcctttaga tgcgccgcca ccgagtgcca aaccgaccac tgcggcgggt ttggcggttt
     2521 gcaccagctt gcgggcagca ttatttcccg ccgtgccgca ggcggcaagc aacgcggcgg
     2581 cggcgattgc caaaagcggt ctgatttttg aaaacgttac catattttcc attcctttat
     2641 atatcacacc ccgtcaaaaa gagggattgc ttttcttaac aacccccttt gacagccaag
     2701 caaatgggga ctttgttaag tcatcatcaa aattaatatt tctttttttc ctttacggaa
     2761 attatatttg aaggcatact atccaaggtg ggaattatct cacaacaccg ccgttatcca
     2821 aatatcccgc ctttttccct ttctttccat caaaatactt tctttttata ttcattaact
     2881 tgttaaatca ttggctgccg ggtgtcagtt tttccgacaa aatccgtcta atggggtatc
     2941 aacagaacca aaacaggaac acttaatgaa aatcggaaca acttggcaga cggcatccgc
     3001 tatgctggtt ttgcgtctgt ttgccgcata tgaatttttg gaatcgggtt tgcaaaaatg
     3061 gaacggggag aattggtttt ccgaaatcaa cgatcagttt ccattcccgt tcaacttgct
     3121 gccggacgcg ttaaactgga atctcgccat gtatgcggag cttttactgc ccgtactgtt
     3181 gcttttgggt ttggcaacgc gtctgtcggc attagggctg atggtcgtta ccgccgtcgc
     3241 ttgggctgcg gttcacgccg gttcgggtta caatgtctgc gacaacggtt ataaaatggc
     3301 tttaatttat atcgtggtat taatcccgct gcttttccag ggtgcgggcg gatggtcgct
     3361 ggatacgctg ctgaaaaaac ggttttgccc ccaatgccgt ctgaagcaag attgattcag
     3421 tcgtggaatc tgactttaaa cattccaacc ttatctcgtt aacttgatat tctgaaaagg
     3481 aaatagaaat gaacaaaaac attgctgccg cactcgccgg tgctttatcc ctgtctttgg
     3541 ccgccggtgc agttgctgcc aacaaaccgg caagcaacgc aacaggcgtt cataaatccg
     3601 cccatggctc ttgcggcgcg tccaaatctg ccgaaggttc gtgcggcgcg gctggttcta
     3661 aagcaggcga aggcaaatgc ggcgagggca aatgcggtgc gaccgtaaaa aaaacccaca
     3721 aacacaccaa agcatctaaa gccaaggcca aatctgccga aggcaaatgc ggcgaaggca
     3781 aatgcggttc taaataatcc caccccttca aaccaagccg cgtttttcag taaaatgcgg
     3841 cttttttaac ggcaaacaaa gattttttaa caagcacatc attcttttgt gccatccgaa
     3901 ccgggtaaaa atatgattca acacgcaggc ttgggctacc gccgcgactt ggcggaagac
     3961 tttctctcgc tttccgaaaa cagcccgata tgctttatcg aagccgcacc ggaaaactgg
     4021 ctgaaaatgg gcggctgggc gcgcaaacag tttgaccgtg tggcggaacg gctgccgctg
     4081 gcgttgcacg gattgtctat gtcgctgggc gggcaagcac cgctggatac tgatttgata
     4141 gacggcatca aagaaatgat gcgccgttac gattgcacgt ttttctccga ccatttgagc
     4201 tactgccacg acggcggtca tctttacgat ttgttgccgc tgccctttac cgaggaaatg
     4261 gtgcatcata cggcgcggcg tatccgcgaa gtgcaagacc gtttgggctg ccgcatcgcc
     4321 gtggaaaaca cgtcctacta tctgcattcc ccgcttgccg agatgaacga ggttgagttc
     4381 ctcaacgcgg ttgcacgtga ggccgattgc ggcattcatc tggacgtgaa caatatctac
     4441 gtcaacgccg tcaatcacgg cctgttgtcg ccggaggctt ttttgaaaaa cgttgacgca
     4501 gatcgcgtgt gctatatcca tattgccgga catgacgtgg aaacgccgga attgttgatt
     4561 gatacacatg gcgcggcagt tttgccgact gtttgggact tgctcgaact tgcctatgcc
     4621 aagctgccga cgattccgcc caccctgttg gaacgcgatt ttaatttccc gccttttgcc
     4681 gaactcgaag ccgaagtcgc caaaatcgcc gattatcaaa cgcgtgccgg aaaggaatgc
     4741 cgccgtgcag cctgaaacct ccgcccaata ccagcaccgt ttcgcccaag ccatacgcgg
     4801 gggcgaagcc gcagacggtc tgccgcaaga ccgactgaac gtctatatcc gcctgatacg
     4861 caacaatatc cacagcttta tcgaccgctg ctataccgaa acgctgcaat actttgacag
     4921 cgaagaatgg agccgtctga aagaaggttt cgtccgcgac gcgcacgccc aaacgcccta
     4981 ttttcaagaa atccccggcg agttcctaca atattgccaa agcctgccgc tttcagacgg
     5041 cattttggca ctgatggatt ttgaatatac ccaattgctg gcagaagttg ctcaaattcc
     5101 ggatattccc gacattcatt attcaaatga cagcaaatac acaccctccc ctgcggcctt
     5161 tatccggcaa tatcgatatg atgttaccga tgatttgcat gaagcggaaa cagccttgtt
     5221 aatatggcga aacgccgaag atgatgtgat gtaccaaaca ttggacggct tcgatatgat
     5281 gctgctggag ataatgggtt cctccgcgct ttcgtttgac accctcaccc aaacccttgt
     5341 cgaatttatg cctgaggacg ataattggaa aaatattttg cttgggaaat ggtcaggctg
     5401 gactgaacaa aggattatca tcccctcctt gtccgccata tccgaaaata tggaaggcaa
     5461 ttccccgggc caaaaccatc tatccgcata aaattacctt gttcccgata ctatgccgct
     5521 acccgacctg accgatgccg aattaataga gtcgcgtaaa ctgcttctgc attttgcgcg
     5581 gcttcagttg cccgaccacc ctgatttggc tgaagattta gtgcaggaaa cattgctgtc
     5641 cgcatacagc gcaggcgaca gttttcaagg cagggcactt gtcaacagct ggctttttgc
     5701 catattgaaa aacaaaatta ttgacgcatt acgtcaaatc ggaaggcaga ggaaagtctt
     5761 taccacactg gatgacgagc tactggatga agcatttgaa agccattttt cccaaaacgg
     5821 gcattggacg ccggaagggc agccgcaaca ttggaacact ccggaaaaat cattaaacaa
     5881 caacgaattc caaaaaattc tgcaaagctg cctatacaac ttgcctgaaa acaccgcacg
     5941 ggtatttacc ctgaaggaaa tactcggttt ttcatccgac gaaatacaac aaatgtgcgg
     6001 tatcagcacg tccaactacc acaccattat gcaccgcgcc cgagaatcat tgcgccaatg
     6061 cctgcaaatc aaatggttca accaagaaaa cccgaagtaa acgttatgaa aaaatgccgc
     6121 gatatcgccc tgcttctttc caaacatcag gaccgggaaa ccaccccggg cgagaagatt
     6181 tccatataca cacacctgct gttctgccca cattgccgag aatataaaag acagcttcaa
     6241 accatcaaaa tatcactggc aaaaacaacc agaacttcaa aataaatgcc gtctgaaaag
     6301 gcttcagacg gcataagctg acggaaacaa atcaaaccga tttactgtta tcggcagttc
     6361 atccataata cacgcttcaa aagcagcata ttcctccata cggaatatat aaatacgcaa
     6421 aacacgaagg ctgcatcaat ttgctttatt tgccttattt cacagacggc gctacccctc
     6481 ccgcccaacc cgttctttct gaatgagcag atttcaatga ttaaggaaac cctaatgcgc
     6541 ccaatcttcc tatctttcgt tttactccct attttgataa ccgcctgcag cacaccggac
     6601 aagtctgccc gatgggaaaa tatcggcaca atctcaaacg gcaatattca tacatatatc
     6661 aataaagaca gcgtgagaaa aaacggaaat ctgatgattt tccaagataa aaaagttgtt
     6721 accaatctaa aacaagaacg ttttgccaac acccccgcat acaagactgc cattgccgag
     6781 tgggaaatcc actgcaacaa caaaacatac cgcttaagtt cgctacagtt gtttgataca
     6841 aaaaacacgg aaatttccac acaaagctac acagcctctt ccctccgccc gatgagcatc
     6901 ctgtccggga cattaaccga aaaacaatat gaaaccgtat gcggaaaaaa actctgattg
     6961 caacttatat acaaacttac ccacaaacct tatcataaaa atgccgtctg aaatactgaa
     7021 atatcagcat ttcagacggc attttgccat tccctgaaaa ttatccacaa agttatccac
     7081 attatttttt aaaaccggct tccatccgaa atatagtgga ttaacaaaaa tcaggacaag
     7141 gcgacgaagc cgcagacagt acagatagta cggcaaggcg aggcaacgcc gtactggttt
     7201 aaagttaatc cactatataa actcgctata caatttcact atccaaacgt aaattgttcc
     7261 attgatacac aaaacttctt acccccataa ttttgataaa gcatttctta cattcccggc
     7321 tccgtcccgt aaccaacaca gcctctaaaa aataatcgct tgttttgaca ccgatacact
//
LOCUS       DAXHPV010000100         7372 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.100, whole genome shotgun sequence.
ACCESSION   DAXHPV010000100 DAXHPV010000000
VERSION     DAXHPV010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7372
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.100"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..1770
                     /locus_tag="ACFM6C_001454"
     CDS             <1..1770
                     /locus_tag="ACFM6C_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF637 domain-containing protein"
                     /protein_id="HFC6158898.1"
                     /translation="IKTTIHNETVSSSKSALWQKQAGRGSNIETLQLPSFTGPVAPVL
                     SAPGGYIVDIPKGNLKTQIETLTKQPEYAYLKQLQVAKNINWNQVQLAYDKWDYKQEG
                     MTPAAAAVVVIVVTVLTYGALSAPAAAGTAGAAGAGAGGAAAGTAAGTGVAAGTAATT
                     GVAAGTSAAAITTAAGKAALASLASQAAVSLINNKGDINHTLKELGKSSTVRQAATAA
                     VTAGVLQGISGLNTQAAEAVSKHFHSPAAGKLTANLINSTAAASVHTAINGGSLKDNL
                     EANILAALVNTAHGEAASKIKGLDQHYVAHKIAHAVAGCAAAAANKGKCQDGAIGAAV
                     GEIVGEALVKNTDFSDMTPEQLDLEVKKITAYAKLAAGTVAGVTGGDVNTAAQTAQNA
                     VENNAVKAVVTAAKVVYKVARKGLKNGKINVRDLKQTLKDEGYNLADNLTTLFDETLD
                     WNDAKAVIDIVVGTELNRANKGEAAQKVKEVLEKNRPYIPNKGAVPNMSTYMKNNPFG
                     KQLAQISEKTTLPTQQGQSVFLVKRNQGLLKTGDRFYLDGQHKNHLEVFDKNGNFKFV
                     LNMDGSLNQMKTGAAKGRKLNLK"
     gene            1779..2156
                     /locus_tag="ACFM6C_001455"
     CDS             1779..2156
                     /locus_tag="ACFM6C_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158899.1"
                     /translation="METLNDIKKILINVGLYQGFDLTDPKVSEEVNHETANMKWIKDY
                     TSDGNWDNEFKEDLKNFLDYMEVCQLALNDKNFKIASNSLFMAMIYAGNLSLIFDSIK
                     TDISTLLSAEYKKNSFSWPSLDE"
     gene            2434..2808
                     /locus_tag="ACFM6C_001456"
     CDS             2434..2808
                     /locus_tag="ACFM6C_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158900.1"
                     /translation="MKNFNVVKESLRELGIKQGFDLYEKATTEKLNSEDPLDLQWLSN
                     YSSDWNDELEEDFDSFFQHMKEYQYAIDNEDIKSACSSLCEAMLYVGNIKNFFEFLKS
                     DMIRLLRGESKTTDFQWPQFDE"
     gene            2894..4648
                     /locus_tag="ACFM6C_001457"
     CDS             2894..4648
                     /locus_tag="ACFM6C_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF637 domain-containing protein"
                     /protein_id="HFC6158901.1"
                     /translation="MPSEKLTIFQTAFVMQVNIQIPYILPRCVRAEDTPYACYLKQLQ
                     VTKDVNWNQVQLAYDKWDYKQEGLTGAGAAIIALAVTVVTSGAGTGAVLGLNGAAAAA
                     TDAAFASLASQASVSFINNKGDVGKTLKELGRSSTVKNLVVAAATAGVADKIGASALN
                     NVSDKQWINNLTVNLANAGSAALINTAVNGGSLKDNLEANILAALVNTAHGEAASKIK
                     QLDQHYITHKIAHAIAGCAAAAANKGKCQDGAIGAAVGEIVGEALVKNTDFSGMTASE
                     IEKAKANITAYAKLVAGTASAVVGGDVNTAANAAQIAVENNTLYPRCVGAKCDEFQKE
                     QQKWIRENPEEYREVLLLQTGFIPIIGDIQSFVQAQTAADHLFALLGVVPGIGESIQA
                     YKVAKAAKNLQGMKKALDKAATVATAQGYVSKTKIKIGQTELRVTAATDKQLLKAIGE
                     GRDTTGKMTEQLFDSLAKQNGFRVLSGGKYGGNNGFDHVWQAADGSVVLIVESKQIRN
                     GTVQLNPNGAGGYTQMSEDWIKQVANSLPDGSPAKAAVFKAEREGKLKTAIAGVDRQT
                     GKAVILSVKVPSKTNIRR"
     gene            4651..5586
                     /locus_tag="ACFM6C_001458"
     CDS             4651..5586
                     /locus_tag="ACFM6C_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 49 family protein"
                     /protein_id="HFC6158902.1"
                     /translation="MGHNMMTTQKWYEHITNVIIGNTANFNSGCPEAIDYVDERKGVP
                     LAAMRHILMYTEAAASHAYLFEHDLNKFKQYAYVAGKLGVLLSVNAEDPEPFFFPCDM
                     LNIQNPMFLMLMSDSPQLREFLVRNIDNIANDTEAFVNRYDLNRHMIYNTLLMVEGKQ
                     LDRLKQRSEKVLVHPTPSKWLQKRLYDYRFFLAFAEQDAEAMKAALEPLFDKKTARMA
                     AKETLSYFDFYLQPQIVTYAKIASMHGFDLGIDQEIAPRDLIVYDPLPAAEYQDIFDF
                     MKQYDLSYPYEYLQDWIDYYTFKTDKLVFGNAKRE"
     gene            6150..6353
                     /locus_tag="ACFM6C_001459"
     CDS             6150..6353
                     /locus_tag="ACFM6C_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158903.1"
                     /translation="MLSLEIQQEGFTIGGGLVLGGCAGAHLARKEPLILTGKTGAGAS
                     AIANASIGYQWTVNLSEPKEGAK"
     gene            6917..>7372
                     /locus_tag="ACFM6C_001460"
     CDS             6917..>7372
                     /locus_tag="ACFM6C_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158904.1"
                     /translation="MLTKLKILLFLFLFVFVLAINLLFFFFSSDIESFGNYQFEYVYD
                     KGWPANYILVMKDGNEGNFDKIISGLVLEYYKEDDNIYFSYIDGQGFASDSCYYKPEI
                     LYGKIILNKNHIININSMEKNNFLSEDKIMKGTRNWLADPKNKCNIQTLD"
BASE COUNT         2339 a         1440 c         1692 g         1901 t
ORIGIN      
        1 atcaaaacca cgatccacaa cgaaaccgtg agcagcagca aatctgctct atggcaaaaa
       61 caggcaggac ggggcagtaa catcgaaacc ttgcaattgc cgagtttcac cggtcccgtt
      121 gcgcccgtac tgtccgcacc cggcggttac attgtcgata ttcccaaagg caatctgaaa
      181 acccaaatcg aaaccctcac caaacagccc gagtatgctt atttaaaaca gcttcaagtt
      241 gcgaaaaaca tcaactggaa tcaggtgcag cttgcttacg ataaatggga ctacaaacag
      301 gagggcatga cacccgcagc agcagctgtc gtcgttatcg tcgtaaccgt attgacctac
      361 ggcgcactgt ccgccccggc agccgccgga acggcgggcg cggcaggcgc aggagcggga
      421 ggagccgcag caggaacggc agccggaact ggagtagcag caggaacggc agccacaacc
      481 ggagtagcag caggcacatc agctgcagct atcaccacag ccgcaggcaa agccgcactg
      541 gccagtctcg ccagccaagc cgcagtttcc ctcatcaaca acaaaggaga cataaaccat
      601 accctgaaag aactgggcaa aagcagcacc gtcagacagg ccgccaccgc cgccgtaacc
      661 gcaggcgtac tgcagggcat aagcgggctg aacacccaag cagccgaagc cgtcagcaaa
      721 cattttcaca gtcccgcagc aggcaaactg accgctaacc tgatcaacag caccgctgcc
      781 gcaagtgtcc ataccgccat caacggcggc agcctgaaag acaatctgga ggcgaatatc
      841 cttgcggctt tggtaaatac cgcgcatggg gaggcggcga gtaagatcaa aggactggat
      901 cagcactatg tcgcccacaa aatcgctcat gccgtagcgg gctgtgcggc tgcagcggcg
      961 aataagggca aatgtcagga cggcgcgatc ggtgcggctg tgggtgagat tgtcggggag
     1021 gctttggtta aaaataccga ttttagcgat atgaccccgg aacaattaga tctggaagtt
     1081 aagaaaatta ccgcctatgc caaacttgcg gcaggtacag ttgcaggcgt aacgggagga
     1141 gatgtcaata ctgctgcaca aaccgcacaa aacgcggtag aaaataatgc ggttaaagct
     1201 gttgtaactg ctgcaaaagt ggtttataag gtagccagaa aaggattaaa aaacgggaaa
     1261 atcaacgtta gagatttaaa acagacgttg aaagacgaag gttataattt agccgacaac
     1321 ctgaccacct tattcgacga aacattggat tggaacgatg ccaaagccgt tattgatatt
     1381 gtcgtcggaa cagagctgaa tcgcgctaat aaaggggaag cggcacaaaa ggtcaaggaa
     1441 gttttagaaa aaaatcgtcc ttatatccct aataaaggtg ctgtaccgaa tatgagtaca
     1501 tacatgaaaa ataatccttt tggaaaacag ctggctcaaa tttcagaaaa gacaacgctt
     1561 ccgacgcagc aagggcagtc tgtcttcttg gtaaaaagaa accaagggtt attaaaaacc
     1621 ggtgataggt tttatttaga tggccaacat aaaaatcatt tagaggtttt tgataaaaat
     1681 gggaacttta agtttgttct aaatatggat ggttcgctta accaaatgaa aactggggca
     1741 gcaaaaggtc gtaaattaaa cttaaaatag gaaattttat ggaaacattg aatgatataa
     1801 aaaaaatctt gattaatgtg gggctttatc aagggtttga tttgacagat ccaaaagtat
     1861 cagaagaagt taatcatgaa acagctaata tgaaatggat taaagattat acttcagacg
     1921 ggaattggga taatgaattt aaggaggatt taaaaaactt tttagattat atggaagtat
     1981 gccaattagc cctaaacgat aaaaatttca aaattgccag taattcttta tttatggcta
     2041 tgatttacgc aggtaatcta tctcttatat ttgattcaat aaaaactgat atatcaacat
     2101 tattgagtgc tgagtataaa aagaatagtt tttcatggcc atctcttgat gaatagaaag
     2161 caagttgtag cctgcatgaa atctaaaacc catgcataag gtgtgggctt cagtatacgc
     2221 gttccatgat ttacggccat atgccgtctg aaaagctcaa ttttttcaga cggcatttgt
     2281 tatgaaagta aatatttaga ttccctgtat actgtttaga ctcgtgtgtg ctgagtaagc
     2341 tgtagtctgc atgaaaccta aaactcgctc aaaattaagc taagacatta gcagggcaag
     2401 ggcgaaaatt gaatcttaaa taaggtgatt cagatgaaaa attttaatgt agtaaaagaa
     2461 agtttaagag agttaggaat taaacaagga tttgatcttt atgagaaagc cacaactgaa
     2521 aaattgaata gtgaagatcc tcttgactta caatggcttt ctaactattc atctgattgg
     2581 aatgatgaat tagaagaaga ctttgattct ttttttcagc atatgaagga atatcaatat
     2641 gctattgaca atgaagacat taaatctgca tgtagttcac tatgtgaagc tatgctctat
     2701 gttggtaata ttaaaaattt ttttgagttt ctcaaaagcg atatgattag actgttgaga
     2761 ggtgaaagta aaacaacaga ctttcaatgg ccgcaatttg atgaatagca gcaagctgta
     2821 gcctgcatga aacctaaaat ccatgcgtaa ggtgtgtgct tcagcacgca cgcgttccat
     2881 gatttacggc tcaatgccgt ctgaaaagct cacaattttt cagacggcat ttgttatgca
     2941 agtaaatatt cagattccct atatactgcc cagatgcgtg cgtgctgaag acacccccta
     3001 cgcttgctat ttgaaacagc tccaagtcac caaagacgtc aactggaacc aggtacaact
     3061 ggcgtacgac aaatgggact ataaacagga aggcttaacc ggagccggag cagcgattat
     3121 cgcactggcc gttaccgtgg tcacctcagg cgcaggaacc ggagccgtat tgggattaaa
     3181 cggtgcggcc gccgccgcaa ccgatgcagc atttgcctct ttggccagcc aggcttccgt
     3241 atcgttcatc aacaacaaag gcgatgtcgg caaaaccctg aaagagctgg gcagaagcag
     3301 cacggtgaaa aatctggtgg ttgccgccgc taccgcaggc gtagccgaca aaatcggcgc
     3361 ttcggcattg aacaatgtca gcgataagca gtggatcaac aacctgaccg tcaacctggc
     3421 caatgcgggc agtgccgcac tgattaatac cgctgtcaac ggcggcagcc tgaaagacaa
     3481 tctggaagcg aatatccttg cggctttggt gaatactgcg catggagagg cagccagtaa
     3541 aatcaaacag ttggatcagc actacattac ccacaagata gcccatgcca tagcgggctg
     3601 tgcggcagcg gcggcgaata agggcaagtg tcaggatggt gcgataggcg ctgcagtcgg
     3661 tgagattgtt ggtgaggctt tggttaagaa taccgatttc agcggtatga ctgcttctga
     3721 aattgaaaaa gctaaagcga atattactgc gtatgcaaaa ctggttgccg gcactgcgtc
     3781 tgccgttgta ggcggggatg tgaatacagc ggcgaatgcg gcacagatag cggtggagaa
     3841 taatactttg tatcctagat gcgttggtgc aaagtgtgat gaatttcaaa aggaacaaca
     3901 aaaatggata cgtgaaaatc ctgaagaata tcgagaagtt ttgcttcttc agacaggatt
     3961 tattccaatt atcggtgata tacagagttt tgtacaagca cagaccgctg ccgatcacct
     4021 gtttgctttg ctgggtgtgg ttccgggtat cggtgaatcg atacaggcct ataaagtagc
     4081 gaaagcggca aaaaatttac aaggcatgaa aaaagccttg gacaaggcag caaccgttgc
     4141 cactgcacag ggctatgtca gtaaaaccaa aatcaaaatc ggtcaaactg aattaagggt
     4201 tactgcagca actgacaaac aattgctgaa agctattggc gaaggaaggg acacgacagg
     4261 taaaatgacc gagcagttat ttgactcttt agctaaacaa aatggcttca gagtgctttc
     4321 gggcggcaaa tacggcggaa ataacggttt tgatcatgta tggcaggctg ccgatggtag
     4381 tgtcgttttg attgtagaaa gtaagcagat taggaacggt acggtacagc tgaatccgaa
     4441 tggtgcgggt ggatatacgc agatgagtga ggattggatt aaacaagttg caaatagctt
     4501 acctgatggt agtcctgcta aagctgctgt cttcaaagca gagcgggaag gcaaattaaa
     4561 aacagcaata gcaggcgttg atcgtcaaac aggtaaggcc gttattcttt ctgtcaaagt
     4621 tccttctaaa accaatataa ggagataaca atggggcaca atatgatgac cacccaaaaa
     4681 tggtatgagc atattactaa tgtaatcata ggcaatactg ctaatttcaa tagcggttgc
     4741 cctgaagcta tagattatgt agatgaaaga aaaggtgtgc cgcttgcagc gatgagacat
     4801 attttaatgt atactgaagc tgcggcttcc catgcctatc tatttgaaca tgatcttaat
     4861 aaattcaagc aatatgctta tgttgcagga aagctggggg ttttgctgag tgtaaatgct
     4921 gaagaccccg aacccttctt ctttccctgt gacatgctca acattcaaaa tccgatgttt
     4981 ctgatgctga tgagcgacag cccacagctg cgcgagtttc tggtgcgcaa tatcgacaac
     5041 atcgccaacg atacagaagc cttcgtaaac cgatacgacc tcaaccgtca tatgatttac
     5101 aatactctgc tgatggtgga gggtaagcag cttgatcggt tgaaacaacg tagcgagaaa
     5161 gtcttggtgc accccacccc tagcaaatgg ctgcaaaagc ggttgtacga ttaccgcttc
     5221 ttcctcgctt tcgccgaaca ggatgccgag gcgatgaaag ccgccttaga gccgcttttc
     5281 gataaaaaaa ccgcgcgtat ggctgccaaa gaaacattgt cctatttcga tttctacctg
     5341 cagccgcaaa tcgttaccta cgccaaaatc gcatccatgc acggtttcga tttgggcata
     5401 gatcaagaaa tcgcaccgag ggatttgatt gtttacgatc cgctgccggc agccgaatac
     5461 caggacatct tcgattttat gaaacagtac gacttgtctt acccgtatga atatctgcag
     5521 gattggatag attactatac gttcaaaacc gataagctgg tatttggtaa cgcgaagcga
     5581 gagtgagccg taaaactctg agctcctgtt ttatagatta caactttagg ccgtcttaaa
     5641 gctgaaagat tttcgaaagc tataaattga agcccttcca cagtacatag atctgtgttg
     5701 tggcggggct ttaccacgct gattgccgga gaagaactca acctgctggc aaaacaaggc
     5761 atgagatctt tgcaataaca tgagttgaga cctttgcaaa aaagcccttc cccgacatcc
     5821 gaaacccaaa cacaggattt cggctgtttt cgtaccaaat acctcctaat tttacccaaa
     5881 tatcccctta atcctccccg gatacccgat aatcaggcat ccgggctgcc ttttaggcgg
     5941 cagcgggcgc atttagcctg ttggccgctt tcaacaggtt caaacacatc gccttcagat
     6001 ggctttgcgc actcactttg tcatttccaa tgttccaagt acacctacta cgataagagg
     6061 aagagagctt gaaggaaaac ttattttaga agttcctgct caggtcaatc caattccaca
     6121 atctgtatta agggcggcac aagaagaaaa tgttatcatt agagatacaa caggaaggat
     6181 ttacaatagg tggtggttta gtattaggtg gttgtgcagg tgcacatctt gcaagaaaag
     6241 aaccattgat actaacaggg aaaacagggg caggtgcgtc agcaattgca aatgcaagca
     6301 ttggatatca atggactgtc aatttgtcag agccaaaaga aggagctaaa taataatgca
     6361 ttcccactat atatttggta ttttgatgat ttcatatgtt ttcgcaatgt tatttaattt
     6421 tataatatca tataaaatat ttaaagaaga aaaattaatt aatggttttt ttgattttct
     6481 acttaaatca agctacctta actttaaata tttcaatata ttatttggaa aagaaaaaat
     6541 ctcaaatatt ttttatttga aattattaag aattaatctg gcgttggggg tttttatctt
     6601 atccttaata attataaata ttttttgttt gtagtaaaaa tatggtacag atatgtacag
     6661 ctagctttgt ttcagtaagg tataactgta tataatactc agatttttca cgttgggcta
     6721 tacatggaaa tatatctgtg attaaagatg ttaatggtaa gtatcgatta gcacctgaaa
     6781 agcatgattt taaaatgcat tcctttgggg ggagaaaaaa gtaatgtaaa aacaatattt
     6841 agaaatatgg aaactataat tggtagccca gggtaagggg tacctttcag gattgaattt
     6901 aaaggagagg taaatattgt taactaagtt gaaaattttg ctatttttgt tcttatttgt
     6961 ttttgtattg gctattaatt tgcttttctt cttttttagt tcggatatcg agagtttcgg
     7021 gaactatcag tttgaatatg tttacgataa aggttggcct gctaattata ttttagtcat
     7081 gaaagatgga aatgaaggga attttgataa aataatatcc ggattggttt tagaatatta
     7141 taaggaggat gataacattt atttttctta tattgacggg caaggatttg cttcagactc
     7201 ttgctattac aaaccggaaa ttttatatgg aaaaattatt ttaaataaaa atcatatcat
     7261 taatattaat agcatggaaa aaaataattt tctttcagaa gataaaataa tgaagggaac
     7321 aagaaattgg ctagcagacc ctaaaaataa atgtaatata cagactctag ac
//
LOCUS       DAXHPV010000101         7353 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.101, whole genome shotgun sequence.
ACCESSION   DAXHPV010000101 DAXHPV010000000
VERSION     DAXHPV010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7353)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7353)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7353
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.101"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(446..553)
                     /locus_tag="ACFM6C_001461"
     CDS             complement(446..553)
                     /locus_tag="ACFM6C_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspA"
                     /protein_id="HFC6158905.1"
                     /translation="MPSETLPIIGMWFQTVFVLFSVYSAKIGMVVFIVD"
     gene            complement(567..1019)
                     /gene="rplI"
                     /locus_tag="ACFM6C_001462"
     CDS             complement(567..1019)
                     /gene="rplI"
                     /locus_tag="ACFM6C_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HFC6158906.1"
                     /translation="MQIILLEKIGGLGNLGDIVTVKNGYARNFLIPTGKAKRATEANM
                     KEFEARRAELEAKQAEILADARVRQEKLDGQTVTVAQKAGVDGRLFGSVTNADIAAAI
                     VAAGIEAVKANVRLPNGPLKAVGEYEVEVALHTDAVAKITVAVVAATE"
     gene            complement(1036..1266)
                     /gene="rpsR"
                     /locus_tag="ACFM6C_001463"
     CDS             complement(1036..1266)
                     /gene="rpsR"
                     /locus_tag="ACFM6C_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009120066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HFC6158907.1"
                     /translation="MARQSFKRRKFCRFTAEKIQEVDYKQVDLLKDFISENGKIIPAR
                     ITGTKAFYQRQLAVAVKRARFLALLPYTDQHK"
     gene            complement(1273..1575)
                     /gene="priB"
                     /locus_tag="ACFM6C_001464"
     CDS             complement(1273..1575)
                     /gene="priB"
                     /locus_tag="ACFM6C_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030894 - replisome [Evidence IEA];
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HFC6158908.1"
                     /translation="MGFNNLVSLAVLIEKVFPIRYTPAGIPVLDIILKHESWQEENGQ
                     QCLVQLEIPARILGRQAEEWQYRQGDCATVEGFLAQKSRRSLMPMLRIQNIQEYKG"
     gene            complement(1576..1944)
                     /gene="rpsF"
                     /locus_tag="ACFM6C_001465"
     CDS             complement(1576..1944)
                     /gene="rpsF"
                     /locus_tag="ACFM6C_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HFC6158909.1"
                     /translation="MRHYEIVFIVHPDQSEQVPAMVERYKTMIAEANGKIHRLEDWGR
                     RQLAYPINKIHKAHYVLMNIETTPEVVEELETAFRFNDAVLRHLTIKTKHAVTESSPM
                     LGGEKAKNLLSGASEEAVAQ"
     gene            complement(2100..3050)
                     /gene="trxB"
                     /locus_tag="ACFM6C_001466"
     CDS             complement(2100..3050)
                     /gene="trxB"
                     /locus_tag="ACFM6C_001466"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADPH) activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0019430 - removal of superoxide radicals
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HFC6158910.1"
                     /translation="MSQHRKLIILGSGPAGYTAAVYAARANLNPVIITGIAQGGQLMT
                     TTEVDNWPADADGVQGPELMARFLAHAERFGTEIIFDQINAVDLQKRPFTLKGDMGEY
                     TCDALIVATGASAKYLGLPSEEAFAGKGVSACATCDGFFYKNQDVAVVGGGNTAVEEA
                     LYLANIAKTVTLIHRRSEFRAEKIMIDKLMKRVEEGKIILKLESNLQEVLGDDRGVNG
                     ALLKNNDGSEQQIAVSGIFIAIGHKPNTDIFKGQLEMDEAGYLKTKGGTADNVGATNI
                     EGVWAAGDVKDHTYRQAITSAASGCQAALDAERWLGSQNI"
     gene            3189..5351
                     /locus_tag="ACFM6C_001467"
     CDS             3189..5351
                     /locus_tag="ACFM6C_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HFC6158911.1"
                     /translation="MQQKIRFQIEGMTCQACASRIEKVLNKKDFVESAGVNFASEEAQ
                     VVFDDSKTSVADIAKIIEKTGYGAKEKTEDTLPQPEAEHHIGWRLWLLFTINVPFLIG
                     MAGMMIGRHDWMIPPLWQFALASVVQLWLAVPFYKSAWASIKGGLANMDVLVTIGTVS
                     IYLYSVYMLFFSPHAAYGMAHVYFEVGVMVIGFVSLGKFLEHRTKKSSLNSLGLLLKL
                     TPTQVNVQRNGEWKQLPIDQVQIGDLIRANHGERIAADGIIESGSGWADESHLTGESN
                     PEEKKAGGKVLAGALMTEGSVVYRATQLGSQTQLGDMMNALSEAQGSKAPIARVADKA
                     AAVFVPAVVGIALLTFIVTWLIKGDWTVALMHAVAVLVIACPCALGLATPAAIMVGMG
                     KAVKHGIWFKDAAAMEEAAHVDAVVLDKTGTLTEGRPQVAAVYCVPDSGFDEDALYRI
                     AAAVEQNAAHPLARAIVSAAQARGLDIPTAQNAQTVVGAGIAAEVKGAGLVKAGKAEF
                     AELTLPKFSDGVWEIASVVAVSVNGKPIGAFALADALKADTAEAIGRLKKHNIDVYIM
                     SGDNQGTVEYVAKQLGIAHAFGNMSPRDKAAEVQKLKAAGKTVAMVGDGINDAPALAA
                     ANVSFAMKGGADVAEHTASATLMQHSVNQLADALLVSQATLKNIKQNLFFAFFYNILG
                     IPLAALGFLNPVIAGAAMAASSVSVLSNALRLKRVKID"
     gene            5407..7293
                     /gene="uvrC"
                     /locus_tag="ACFM6C_001468"
     CDS             5407..7293
                     /gene="uvrC"
                     /locus_tag="ACFM6C_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HFC6158912.1"
                     /translation="MPSESVFQMIDMNTENRSPEQFDIPLFLKNLPKLPGVYRFFDEG
                     GKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTITRSEAEALILENNFI
                     KALSPKYNILFRDDKSYPYLMLSGHQYPQMAYYRGTLKKPNQYFGPYPNSNAVRDSIQ
                     VLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCTAPCVGHISEEDYRDSVREAATFLNGK
                     TDELTRTLQHKMQAAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNPNNPNDIDLLA
                     LAVSDGIVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHYLGKSKPDI
                     IISNFPMPDALKEALESEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQRRLQQSSQ
                     QHRIDELAKILGMDSDGLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYRRYNITT
                     AKPGDDYAAMREVLTRRYGKMQEAEANGETVKWPDAVLIDGGKGQIGVAVSVWEELGL
                     HIPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQTVRDESHRFAITGHRK
                     KRDKARVTSSLSDIPGVGSKRRQALLTRFGGLRGVIAASREDLEKVEGISKALAETIY
                     NHLH"
BASE COUNT         1839 a         1955 c         1835 g         1724 t
ORIGIN      
        1 attttgcaaa ggtctcaaac ggtatttccg ccataatgac cggcatacaa gccgcaacct
       61 ttgcaatcat atatataagt tattaaattt ttaggatgta ttttgacaat ctgttgattt
      121 caactgcttg caagggaaaa ggccattatt tttcggtcaa tcaggaagtt atcctattga
      181 acattttgaa acaaagtatg ttatcagcac catattgaaa cacagccaaa ttttatgccc
      241 gataccattt tcaaaataaa taatcccctg attttcacag atttctcaaa atcagaaaag
      301 tttttgtcaa ttgaatattt tggctgtgtt ttagtaatct gttgatttca attatttgca
      361 agggaaaaga caattatttt ttcggttagg aagagaccta tcctattgag tatattgaag
      421 ccaggtacgc tgtactggtt taaatttaat ccactataaa aacaaccatc ccgatttttg
      481 cagaatatac ggaaaacaaa acaaataccg tctgaaacca cattccgata atcggcaggg
      541 tttcagacgg catctgataa tttcaattac tcggttgcgg caacgacggc aacggtaatt
      601 ttagcaacgg catcagtgtg caaagccact tccacttcgt actcgccaac ggctttcaga
      661 ggaccgttcg gcagacgtac atttgctttc acggcttcga tgccggcagc aacgattgca
      721 gcagcaatgt cggcattggt aacggaaccg aacaggcgac cgtccacacc ggctttttga
      781 gcaacggtaa cggtttgacc gtccaatttt tcctgacgga ctcgggcatc tgccaaaatt
      841 tcagcctgtt tggcttccaa ttctgcacgg cgtgcttcaa actctttcat attcgcttcg
      901 gtcgcacgtt ttgccttacc cgtaggaatc aaaaagttgc gggcatagcc gtttttaacg
      961 gttacgatgt cgcccaagtt gcccaaaccg ccgatttttt ctaacagaat aatttgcatg
     1021 attcaatctc caaaattatt tgtgttggtc ggtgtaaggc agcagagcca ggaagcgtgc
     1081 gcgttttacg gcaacagcca attggcgttg gtagaatgct ttcgttcctg tgatgcgtgc
     1141 aggaatgatt ttaccgtttt cagagataaa gtcttttagc aaatcaactt gtttgtaatc
     1201 gacttcttgg attttttcag ccgtgaaacg gcagaatttt ctacgtttga atgattgacg
     1261 agccattgtc gtttaacctt tatattcttg aatattttgt atcctgagca tcggcatcag
     1321 ggaacgtctg cttttttgag ccaaaaaacc ttcgactgtt gcgcagtcgc cttgccgata
     1381 ctgccactct tccgcctgcc tgcctaaaat ccgtgccgga atttccaatt ggacaaggca
     1441 ttgctgcccg ttttcctcct gccacgattc gtgctttaaa ataatatcta aaacagggat
     1501 tccggcaggc gtatatcgaa tagggaaaac cttttcaatt aacacggcaa gcgaaacaag
     1561 attattgaat cccaattatt gggcgaccgc ttcttcagac gcgccgctca acaggttctt
     1621 agccttttca ccacccaaca taggggatga ttcggtaacg gcgtgtttgg ttttgatggt
     1681 tagatggcgc aatacggcat cattgaagcg gaatgcggtt tccagctctt caaccacttc
     1741 gggagtggtt tcgatgttca tcaaaacgta atgggcttta tggattttgt taatcgggta
     1801 agccagttgg cggcgacccc aatcttccaa acggtgaatc ttaccgtttg cttcggcaat
     1861 catggttttg taacgttcaa ccatagcagg cacttgctcg ctttgatcag gatgaacgat
     1921 aaacacgatc tcgtaatgac gcatgttatc tccttatgga tggtaaaaac agccttctgc
     1981 catgcgaaag cagaaggcaa ggttcaaaga gcaggcatta tattggggtt tgccgacgga
     2041 atcaaggatt tggtgcgaaa aatttgcatt ccgccgaaaa tttcggtttc agacggcatt
     2101 caaatgtttt ggctgcccag ccagcgttcc gcgtccaaag ccgcctgaca gccggaagcc
     2161 gcgctggtaa tcgcctgacg gtaggtatgg tcttttacgt cgcccgccgc ccatacgcct
     2221 tcgatattgg ttgcgccgac attgtccgcc gtgccgcctt tggttttcag gtaaccggct
     2281 tcgtccattt ccaactgacc tttgaaaata tcggtattcg gcttgtgccc gatggcgata
     2341 aaaatgccgc tgacggcaat ttgttgctca gaaccgtcgt tgttttttaa taatgcgccg
     2401 tttacgcccc gatcgtcgcc cagtacttct tgcaggttgc tttccagctt gaggatgatt
     2461 ttgccctctt ccacgcgttt catcagtttg tcgatcatga ttttttcggc acggaactcg
     2521 ctgcggcggt ggatcagggt aacggttttg gcgatattgg caaggtagag tgcctcttca
     2581 actgccgtat tgccgccgcc aactacggca acatcttggt ttttgtagaa gaaaccgtcg
     2641 caggtggcac aagcggaaac gccttttcct gcaaacgctt cctcactcgg caaaccgagg
     2701 tatttggcgg acgcgcctgt tgcgacaatc agggcatcgc aagtgtactc gcccatatcg
     2761 cctttgagtg taaacgggcg tttttgcaga tcgacggcgt tgatttggtc aaaaatgatt
     2821 tccgttccga aacgttcggc gtgggcgaga aaccgcgcca tcaattccgg cccttgcacg
     2881 ccgtcggcat cggcaggcca gttgtccact tcggtggtgg tcatcagttg cccgccttgc
     2941 gcgatacctg taataatgac ggggtttaaa ttggcacgcg cggcatagac ggcggcggtg
     3001 tatccggcgg ggccggaacc caaaataatc agtttgcggt gttgggacat tgtttttcct
     3061 ttgctgtgtc aagttttcgg attctactcg aattatcggc gcgtttgaga aatttcgacc
     3121 ataccggcgc tcagacggca tcccgcagcc ttaactgccg tctgaatatc aaagcaggaa
     3181 tcacgcttat gcaacaaaaa atccgtttcc aaatcgaagg catgacctgc caggcctgcg
     3241 cttcgcgcat tgaaaaagtg ttgaacaaaa aagattttgt cgaatcggcg ggggtaaact
     3301 tcgccagcga agaggcgcag gtagtgtttg acgacagcaa aacctcagta gccgacattg
     3361 ccaaaatcat tgagaaaacc ggttacggcg cgaaggaaaa aacggaagat acattgccgc
     3421 aacccgaagc agaacaccat atcggctggc ggctgtggct gctgttcacc atcaacgtcc
     3481 cgttccttat cggcatggcg gggatgatga tcggcagaca cgattggatg attccgccgt
     3541 tgtggcagtt cgcattggcg agtgtggtgc aactttggct ggcggtgcca ttttacaaaa
     3601 gcgcgtgggc gagcattaag ggcggactgg cgaatatgga cgtgctggtt accatcggca
     3661 cggtctcgat ttacctgtat tccgtctata tgctgttttt cagcccgcac gcggcgtacg
     3721 gtatggcgca tgtgtatttt gaagtgggcg tgatggtgat tggttttgtg tcactgggca
     3781 aatttttgga acaccgtacc aaaaaatcca gcctcaacag cttgggcttg ctgctcaaac
     3841 ttacaccaac ccaagtcaac gtgcaacgca acggcgaatg gaaacagctt cccatcgacc
     3901 aagtgcaaat cggcgacctt atccgcgcca accacggcga acgcattgcc gcagacggca
     3961 tcattgaaag cggcagcggt tgggcggacg agagccatct taccggcgaa tccaatcctg
     4021 aagaaaaaaa ggcgggcggc aaagtgttgg cgggcgcgtt aatgaccgaa ggcagtgtgg
     4081 tgtaccgcgc cacgcagctc ggcagccaaa cccagctcgg cgacatgatg aacgcgctct
     4141 ctgaagcaca aggcagtaaa gcaccgattg cgcgcgtggc ggacaaggcg gcggcggtgt
     4201 tcgtgcctgc cgtcgtgggc atcgcgttgt tgacttttat tgttacttgg ctgattaagg
     4261 gcgattggac ggttgcgctg atgcacgccg tcgccgtttt ggtgattgcc tgcccgtgtg
     4321 cgctcggtct ggctacaccc gccgcgatta tggtcggcat gggcaaagcg gtgaaacacg
     4381 gtatttggtt taaagacgcg gcggcaatgg aagaagccgc ccacgtcgat gccgtcgtgc
     4441 tggacaaaac cggcacactg accgaaggca ggccgcaggt tgccgccgtt tattgcgttc
     4501 ccgacagcgg ctttgacgaa gacgctttgt accgcatcgc cgccgccgtc gaacaaaacg
     4561 ccgctcatcc gctcgcccga gccatcgttt ccgccgccca agcgcgcggt ttggacattc
     4621 ctaccgcaca aaacgcccaa accgttgtcg gcgcaggcat tgccgccgaa gtaaaaggcg
     4681 cgggtttggt aaaagcaggc aaagccgaat ttgccgaact gaccttgccg aagttttcag
     4741 acggcgtttg ggaaatcgcc agtgtggttg ccgtatctgt aaacggcaaa cctatcggcg
     4801 cattcgcact cgccgacgcg ttgaaagccg ataccgccga agccataggc cgtctgaaaa
     4861 aacacaatat cgatgtctat attatgagcg gcgacaacca aggcacggtc gaatatgtcg
     4921 ccaaacaact gggcatcgca cacgccttcg gcaatatgag tccgcgcgac aaggctgccg
     4981 aagtacagaa actcaaagcc gccggcaaaa ccgtggcgat ggtcggcgac ggcatcaacg
     5041 acgcacccgc gctcgccgcc gccaacgtca gcttcgccat gaaaggcggt gcggacgttg
     5101 ccgaacatac cgcctccgcc acgctgatgc agcattcggt caaccagctc gccgatgcac
     5161 tgttggtatc gcaggcgact ttgaagaaca tcaagcaaaa cctgtttttc gccttcttct
     5221 acaatatctt gggcattcca ctcgccgcac tcggcttttt aaaccccgtc atcgcaggcg
     5281 cggcaatggc ggcaagctcg gtttccgtgt tgagcaacgc cttgcgcctg aaacgggtaa
     5341 aaatcgattg accgcatata actcgcccga cagcttttcc gaacggataa ggctgccgtt
     5401 gtcgatatgc cgtctgaatc cgtttttcaa atgattgata tgaatacaga aaaccgttct
     5461 ccggaacaat tcgacatccc gctcttcctc aaaaacctgc ccaagctgcc gggcgtgtac
     5521 cgtttttttg acgaaggcgg caaagtctta tacgtcggca aagcggtcaa cctcaagcgg
     5581 cgcgtgtccg gctatttcca aaaaaacgac cattcgccgc gcatcgcatt gatggtaaaa
     5641 caggtgcatc atatcgaaac caccatcacg cgttccgaag ccgaagcact gattctcgaa
     5701 aacaacttca tcaaagcctt atcgccgaaa tacaatattc ttttccgcga tgacaaaagc
     5761 tatccttatt tgatgctcag cggccatcaa tatccgcaaa tggcgtatta ccgcggcacg
     5821 ctgaagaagc caaatcaata tttcggcccg tatcccaaca gcaacgccgt gcgcgacagt
     5881 attcaagtgt tgcaaaaagt ctttatgctg cgtacctgcg aagacagtgt attcgagcac
     5941 cgcgaccgtc cttgtctgct ttaccaaatc aaacgctgca ccgcgccttg tgtaggccac
     6001 atcagcgaag aagattatcg cgacagcgtg cgtgaagcag caactttcct caatggcaaa
     6061 accgacgaac tgacgcgtac cctgcaacac aaaatgcagg ccgccgccgc gaatctgcaa
     6121 tttgaagaag ccgcccgtta ccgcgaccaa atccaagcac tcggcattat gcagagtaat
     6181 cagttcatcg acagcaaaaa cccgaacaac cccaacgata tcgatttgct cgcgctggcg
     6241 gtttcagacg gcatcgtctg cgtacactgg gtcagcatac gcggtgggcg gcacgtcgga
     6301 gacaaaagtt tcttccccga caccaaaaac gatcccgagc caaatgggca agactatgcc
     6361 gaagccttcg tcgcccaaca ctatctgggc aaaagcaaac ctgacatcat catcagcaac
     6421 ttccccatgc ccgacgcatt gaaagaagcc ctagagagcg aacacggcaa acaaatgcaa
     6481 tttgtcacca agaccatagg cgaacgcaaa gtttggttga aaatggcgga gcaaaacgca
     6541 caaatggcga ttgcacaacg ccgcctgcaa caaagcagcc agcaacaccg catcgacgaa
     6601 ctcgccaaaa tcctcggtat ggattcagac ggcctcaacc gcctcgaatg tttcgacatc
     6661 agccacaccc aaggcgaggc cactattgcg tcctgcgttg tgtacgatga gcaaaacatc
     6721 cagccctcgc aataccgccg ctacaacatc accaccgcca aaccgggcga cgactacgcc
     6781 gccatgcgcg aagtgttgac gcgccgttac ggcaaaatgc aggaggccga agccaacggc
     6841 gagaccgtca aatggccgga tgccgtgtta attgacggcg gcaaagggca aatcggcgta
     6901 gccgtatcgg tatgggaaga actcgggctg cacatccctt tggtcggcat tgccaaaggc
     6961 ccggagcgca aagccggtat ggaggagctc atactgcctt ttaccggcga agtcttccgc
     7021 ctgccgccca acagcccggc cttgcatcta ttgcaaaccg tacgcgatga atcgcaccgt
     7081 ttcgccatta ccggtcaccg caaaaaacgc gacaaagccc gcgttacctc ctccttaagc
     7141 gacatccccg gcgtaggcag caaacgccgc caagccctgc tcacccgctt cggcggtctg
     7201 cgcggcgtga ttgccgccag ccgcgaggac ttggaaaaag tggaaggcat cagcaaggca
     7261 ttggcggaaa cgatttacaa tcatctgcat tagcatgctg tcaaagacaa aatccgtctg
     7321 taaaaaatat gatacagcag gtcggtatac cga
//
LOCUS       DAXHPV010000102         7352 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.102, whole genome shotgun sequence.
ACCESSION   DAXHPV010000102 DAXHPV010000000
VERSION     DAXHPV010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7352
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.102"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(108..2711)
                     /gene="pepN"
                     /locus_tag="ACFM6C_001469"
     CDS             complement(108..2711)
                     /gene="pepN"
                     /locus_tag="ACFM6C_001469"
                     /EC_number="3.4.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HFC6158913.1"
                     /translation="MSKTVRYLKDYQTPAYRILETDLHFDIAEPQTVVKSRLTVEPQR
                     VGEPLVLDGSAKLLSVKINGAAADYMLEGETLTIADVPSERFTVEVETEILPAENKSL
                     MGLYASAGNLFTQCEPEGFRKITFYIDRPDVMSKFTTTIVADKKRYPVLLSNGNKIDG
                     GEFSDGRHWVKWEDPFAKPSYLFALVAGDLAVTEDYFTTMSGRNVKIEFYTTEADKPK
                     VGFAVESLKNAMKWDETRFGLEYDLDIFMVVAVGDFNMGAMENKGLNIFNTKFVLADS
                     RTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRA
                     VRRIENIRLLRQHQFPEDAGPTAHPVRPARYEEMNNFYTMTVYEKGAEVVRMYHTLLG
                     EEGFQKGMKLYFQRHDGQAVTCDDFRAAMADANGINLDQFALWYSQAGTPVLEAEGRL
                     KNNIFELTVKQTVPPTPDMADKQPMMIPVKIGLLNRNGEAAAFDYQGKRATEAVLLLT
                     EAEQTFQFEGVTEAVVPSLLRGFSAPVHLNYPYSDDDLLLLLAHDSDAFTRWEAAQTL
                     YRRAVAANLAALSDGIGLPKHEKLLAAVEKVISDDLLDNAFKALLLGVPSEAELWDGT
                     ENIDPLRYHQAHEALLDTLAAHFLPKWHELNRQAAKQENQSYEYSPEAAGWRTLRNVC
                     RAFVLCADPAHIETVAEKYGEMAQNMTHEWGILSAVNGNESDTRNRLLAQFADKFSDD
                     ALVMDKYFALIGSSRRSDTLQQVQTALQHPKFSLENPNKARSLIGSFSRNVPHFHAED
                     GSGYRFIADKVIEIDRFNPQVAARLVQAFNLCNKLEPHRKNLVKQALQRIRAQEGLSK
                     DVGEIVGKILD"
     gene            complement(2923..3717)
                     /locus_tag="ACFM6C_001470"
     CDS             complement(2923..3717)
                     /locus_tag="ACFM6C_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HFC6158914.1"
                     /translation="MNTILAFDIETVPDVQGIRTLYELPSSLPDDEVVLFAQQKRRAQ
                     TGGDFMQHHLHQVVAISCCMRWGQDKVHVGTIGEMDDGEEVVIAKFFELIEKHTPQLV
                     SWNGGGFDLPVLHYRSLIYGINAARYWDMGDGDFGDSRDFKWNNYISRYHQRHCDLMD
                     LLALYQPRANVPLDDMAKLCGFPGKLGMDGSKVWEAFHAGKLKEIRNYCETDAVNTYL
                     MYLRFCLVSGRFDADEYEMEIKRIRNYLSAQTEDKPHWSEFVQAWK"
     gene            complement(4467..5336)
                     /locus_tag="ACFM6C_001471"
     CDS             complement(4467..5336)
                     /locus_tag="ACFM6C_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase"
                     /protein_id="HFC6158915.1"
                     /translation="MKFIFFVLYVLQFLPFALLHKIADLTGSLAYFLVKPRRRIGEIN
                     LAKCFSEWSEEKRKTVLKQHFKHMAKLMLEYGLYWYAPAGRLKSLVRYRNKHYLDDAL
                     AAGEKVIILYPHFTAFEMAVYALNQDVPLISMYSHQKNKMLDEQILKGRNRYHNVFLI
                     GRTEGLRALVKQFRKSSAPFLYLPDQDFGRNDSVFVDFFGIQTATITGLSRIAALANA
                     KVIPAIPVREADNTVTLHFYPAWKSFPSEDAQADAQRMNRFIEERVREHPEQYFWLHK
                     RFKTRPEGSPDFY"
     gene            complement(5387..5923)
                     /gene="ruvC"
                     /locus_tag="ACFM6C_001472"
     CDS             complement(5387..5923)
                     /gene="ruvC"
                     /locus_tag="ACFM6C_001472"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HFC6158916.1"
                     /translation="MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPADAS
                     LADRIAVIVRHIGEVVAVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLP
                     VSEYTALQVKQAVVGKGKAAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHG
                     LAAKLNPSGMQVKRGRFQ"
     gene            complement(5926..6165)
                     /locus_tag="ACFM6C_001473"
     CDS             complement(5926..6165)
                     /locus_tag="ACFM6C_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fis family transcriptional regulator"
                     /protein_id="HFC6158917.1"
                     /translation="MPHTLPDISQCIRQNLEQYFKDLNGTEPCGVYDMVLHQVEKPLL
                     VCVMEQCGGNQSKASVMLGLNRNTLRKKLIQHGLL"
     gene            complement(6196..7206)
                     /gene="dusB"
                     /locus_tag="ACFM6C_001474"
     CDS             complement(6196..7206)
                     /gene="dusB"
                     /locus_tag="ACFM6C_001474"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HFC6158918.1"
                     /translation="MHIGGYFIDNPIALAPMAGITDKPFRRLCRDFGAGWAVCEMLTS
                     DPTLRNTRKTLHRSDFADEGGIVAVQIAGSDPQQMADAARYNVSLGAQLIDINMGCPA
                     KKVCNVQAGSALMQNEPLVAAILEAVVKAAGVPVTLKTRLGWHDDHKNLPVIAKIAED
                     CGIAALAVHGRTRTQMYKGEAAYDLIAETKCRLNIPVWVNGDITSPQKAQAVLKQTAA
                     DGIMIGRGAQGRPWFFRDLKHYAEHGVLPPALSLAECSAAILNHVRAMHAFYGETAGV
                     RIARKHIGWYIDEMPDGEQTRREINRLDSAAAQYDMLAGYLERLAGKTDRWACAYRQN
                     AV"
BASE COUNT         1655 a         1938 c         1926 g         1833 t
ORIGIN      
        1 atatgacttt gcggccgttt tgccattgcg taataaaacg atggggaagt gatgataaaa
       61 cgtgtgtgta actatatcag acggcattgt ttttctgttt gacggcctca atccaaaatt
      121 ttgccgacga tttcgcccac gtctttcgac aatccttcct gcgcccgaat gcgctgcaat
      181 gcttgtttca ccaagttttt gcggtgcggc tcgagcttgt tgcagaggtt gaacgcctgc
      241 accaaacggg cggcgacctg cgggttgaag cggtcgattt cgatgacttt gtcggcgatg
      301 aagcggtagc cgctgccgtc ttctgcgtga aaatgcggga cgttgcggct gaagctgccg
      361 atgagcgaac gggctttgtt ggggttttcg aggctgaatt tcggatgctg caaggcggtt
      421 tgaacctgtt gcagggtgtc gctgcggcgg cttgagccga taagggcgaa atatttgtcc
      481 atcaccagcg cgtcgtctga aaacttgtcg gcaaactgcg ccagcaggcg gttgcgcgta
      541 tcgctttcgt tgccgttaac ggcggacagg atgccccatt cgtgggtcat gttttgcgcc
      601 atttcgccgt atttttcggc aacggtttcg atgtgcgcgg ggtcggcgca caggacgaag
      661 gcgcggcaga cgttgcgcag cgtgcgccag ccggcagctt cggggctgta ctcgtagctt
      721 tggttttcct gcttcgccgc ctgacggttc aattcgtgcc atttcggcag gaagtgggcg
      781 gcaagcgtgt ccaacaaggc ttcgtgcgcc tgatggtagc gcaacgggtc gatgttttcc
      841 gtgccgtccc acagctcggc ttcagacggc acgcccaaaa gcagggcttt gaaggcgttg
      901 tccaagaggt cgtctgaaat gactttttcg acggcggcaa gcagtttttc gtgtttcggc
      961 aacccgatgc cgtctgaaag cgcggcaagg ttggcggcga cggcgcggcg gtagagcgtt
     1021 tgggcggctt cccagcgcgt gaaggcgtcg ctgtcgtggg cgagcaggag cagcaggtcg
     1081 tcgtcgctgt acggatagtt caggtgcacc ggcgcgctga agccgcgcag cagcgaggga
     1141 acgacggctt cggtcacgcc ttcgaactgg aaggtttgtt cggcttcggt cagcagcaat
     1201 acggcttcgg tcgcgcgttt gccctgatag tcgaatgccg ccgcttcgcc gttgcggttc
     1261 agcagcccga ttttgacggg aatcatcatc ggctgcttgt ccgccatatc gggcgtaggc
     1321 ggcacggttt gtttgacggt taactcgaaa atattgtttt tcagacggcc ttcggcttcc
     1381 aaaacgggcg tgcccgcctg gctgtaccac aaggcgaact ggtcgagatt gatgccgttc
     1441 gcgtccgcca tcgccgcgcg gaaatcgtcg caggtcacgg cctgcccgtc gtggcgttgg
     1501 aaatagagct tcataccttt ttggaagccc tcttcgccga gcaaggtgtg atacatccgc
     1561 accacttccg cgcctttttc ataaacggtc atggtgtaga aattgttcat ctcctcatat
     1621 cgggcggggc gcaccggatg tgcggtcgga cctgcgtctt cggggaactg gtgctggcgc
     1681 aaaaggcgga tgttttcgat gcggcgcacg gcgcggctgg cgcggtcgcc ggaaaattct
     1741 tggtcgcgga acacggtcag cccttccttc agcgaaagct ggaaccagtc tcggcaggtt
     1801 acgcggttgc ccgtccagtt gtggaaatat tcgtgtccga ccacggattc gatgccttca
     1861 aaatcggtat cggtggcggt gcggctgtcg gcaaggacga acttggtgtt aaagatgttc
     1921 aaacccttgt tttccatcgc acccatattg aaatcgccca cggcgacgac catgaaaata
     1981 tccaagtcgt attccaagcc gaagcgcgtt tcgtcccact tcatcgcgtt tttcaaggat
     2041 tccacggcaa agccgacctt gggcttgtcc gcttcggtgg tgtaaaactc gattttgacg
     2101 tttctgccgc tcatggtggt gaaatagtct tccgttaccg ccaaatcgcc cgcaaccaaa
     2161 gcaaacagat agctcggttt ggcaaacggg tcttcccatt tcacccaatg gcggccgtct
     2221 gaaaactcgc cgccgtcgat tttgttgccg ttagagagca aaacgggata gcgttttttg
     2281 tccgcgacga tggtggtcgt gaacttggac atgacatccg gacggtcgat atagaacgtg
     2341 attttgcgga agccctccgg ctcgcactgg gtaaacaggt taccggcgga cgcatacagc
     2401 cccatcagcg atttgttttc cgccggcagg atttcggttt ccacttcgac ggtgaagcgt
     2461 tcggacggca cgtctgcaat cgtcagcgtc tcgccttcca acatataatc cgccgccgcg
     2521 ccgttgattt tgacggacaa gagtttcgcc gaaccgtcca acaccagcgg ctcccctacc
     2581 ctctgcggct caaccgtcaa acgcgacttc acgacggttt gcggttcggc aatatcgaaa
     2641 tgcaggtcgg tttcgagaat gcggtaggca ggcgtttggt aatctttcag ataacggacg
     2701 gttttgctca tttttttctt tcaatattgt ttggtttgac tggaaaaggc ttcagacagc
     2761 acggatacag cttttaaagc ggattaacaa aaatcaggac aaggcgacga agccacagac
     2821 agtacagata gtacgggctg taccggtttg aatttaatcc accatatgcc gtctgaaacc
     2881 gaaacggcgg cacaagcgta ccgccttcgg acagcaggtt ttctatttcc acgcttggac
     2941 aaattctgac caatgcggtt tatcttctgt ttgggcggaa agatagtttc tgatccgctt
     3001 gatttccatt tcgtattcgt ccgcgtcgaa tctgccgctg accagacaga aacgcagata
     3061 catcaaatac gtattcacgg catcggtttc gcaataattg cggatttcct tcaatttacc
     3121 ggcatggaat gcctcccaga ccttgctgcc gtccataccc aatttacccg gaaaaccgca
     3181 cagtttcgcc atatcgtcca gcggcacatt cgccctcggc tggtaaagcg cgagcaaatc
     3241 catcaaatcg cagtggcgtt ggtggtaacg gctgatgtag ttgttccact tgaaatcgcg
     3301 gctgtcgccg aaatctccgt cgcccatatc ccaatagcgc gcggcgttga tgccatatat
     3361 cagggagcgg taatgcagaa ccggcagatc gaaaccgccg ccgttccaac tgaccagttg
     3421 cggcgtatgt ttttcaatca actcgaaaaa tttagcaatg accacttcct cgccgtcatc
     3481 catctcgccg atggtgccga catgtacttt atcctgcccc caacgcatac agcacgaaat
     3541 cgccacaacc tgatgaagat gatgctgcat aaaatctccg cccgtctgag cacggcgttt
     3601 ttgctgggca aacagcacca cttcgtcgtc gggcagcgag gacggcagct cgtacaatgt
     3661 tcggataccc tggacatcag gtacggtttc aatatcgaaa gccaaaatcg tattcatggc
     3721 agtaccttgc attcaaaaac agacttgcgc ctattgtgtc attaaaaggc ggataaaaaa
     3781 agaggcaacc ccccacagga ttgccccaat acctcaaatc agagatttac gcttcacaaa
     3841 caatacaggc tttcgcctgc ggctttaccc gcgtagctca actctacgcc ggcaaacttt
     3901 cgtttcaccg tttccaatga aaccccgacc aatcgcaaga ctgaccggaa aatcctttca
     3961 tacggcattt cctgcctgtc gtgtaattcc atgtagcgaa atgtacgcca ttttctacgc
     4021 ttcgccaagc attttttaca atataaatgt caaaacatta attttataaa attgctgaaa
     4081 atattaaata tatggatttt tattttttat atttcaataa atataaattt aattttgatt
     4141 tatatttaaa tttaagcata aaatttcaaa tattaaaggt aatatgaaag gcgtatatta
     4201 aatatttatt tataacgcta tgtttttaaa gaaaattaat tttaatatat taactagatt
     4261 gtctgcatat attcatgggt ttgcggtatt tttttcacaa cctgcttcga attttccgac
     4321 caagtcttaa aaatattgtt tttgaaatac ttaaatagca gcgattataa aatgaaatct
     4381 gttcatataa tctgccattt cgcatttaaa aaaacaatca ggagtttcga ctcgaaacgc
     4441 ctgatatgtt ttgtaatttt acgtagtcag taaaaatcgg ggctgccttc cggtcgggtt
     4501 ttgaaacgct tgtgcagcca aaaatactgc tcgggatgtt cgcgcacgcg ttcctcgata
     4561 aaacggttca tgcgctgcgc gtcggcttgc gcatcttcac tcggaaagga tttccaagca
     4621 gggtagaaat gcaatgtaac cgtattgtct gcctcgcgga cgggaatggc gggtatcact
     4681 tttgcatttg caagcgcggc aatgcggctc aatccggtaa tcgttgccgt ctgaataccg
     4741 aagaaatcca caaaaaccga atcgttgcgt ccgaaatcct gatcgggcag atacagaaac
     4801 ggcgcgctgc ttttgcggaa ctgtttgacg agggcgcgca gcccttcggt gcgcccgata
     4861 aggaagacgt tgtgatagcg gttgcggcct ttcaaaatct gttcgtccaa catcttgttt
     4921 ttttgatgag aatacatact gatcagcggg acatcctgat taagcgcgta caccgccatc
     4981 tcgaacgcgg tgaagtgcgg atacagaatg atgacttttt cccccgccgc cagcgcgtcg
     5041 tccaaataat gcttattgcg gtagcgcacc agcgatttca aacgtccggc aggcgcgtac
     5101 caatataaac cgtattccaa catcagtttc gccatgtgtt tgaaatgctg tttcaacacg
     5161 gttttacgct tttcctcact ccattcggaa aaacattttg ccaaattgat ttcgccgata
     5221 cggcggcgcg gtttgaccag aaagtaggca agcgaacccg tcaggtcggc aatcttgtgc
     5281 agcagcgcaa acggcagaaa ctgcaaaaca tacagtacaa aaaatataaa tttcatctcg
     5341 atacacattt tcttttcaga cggcaaaata caaatgccgt ctgaaactat tgaaacctgc
     5401 cgcgcttgac ctgcatcccc gaaggattga gtttggcggc aagcccgtgg ttgcgtaagg
     5461 cgtgggtcag cgcgacggca agaccgtccg ccgcatccgc ctgcggcgtt cccgaaagcc
     5521 ccagcatctg caccaccata tgctgcacct gttctttcgc cgccttgcct ttgccgacta
     5581 ccgcctgttt gacctgcaag gccgtgtatt ccgaaacggg cagcttatgg ctgaccaatg
     5641 ccgccaatgc cgcgccccta gcctgaccca gcatcagcgt cgatgcagga ttgacgttga
     5701 cgaacacctg ttccactgcc gcctgttgag gcttgtaaac ggcaacgact tcgccgatat
     5761 gccgcacaat cacggcaatc ctgtctgcca gagacgcatc ggcaggcgtt ttgatgcagc
     5821 cggaggcaac ataaaaatga tcccgccccc tgacatcgat gatgccgaaa cccgttacgc
     5881 ggctgcccgg gtcaatgccc aagatacgga cggttgccga catattcaca acaaaccgtg
     5941 ttgaatcagt tttttacgca aggtattgcg gttcagcccc agcatcacgg aggctttgga
     6001 ctggttgccg ccgcattgct ccatcacgca caccagcagc ggtttttcca cctgatgcaa
     6061 gaccatatcg tacacgccgc aaggttcggt accgttcagg tctttgaaat attgttccaa
     6121 attttgtctg atacattggg aaatatcggg aagggtatgg ggcataatcg cgctttcaaa
     6181 aggataatcg ggtgttcaga cggcattttg gcggtaggcg cacgcccaac ggtcggtttt
     6241 tccggcaagt ctttcaagat aacctgcaag catgtcgtat tgcgccgccg cactgtccaa
     6301 gcggttgatt tcacgacgtg tctgttcgcc gtcgggcatt tcgtcgatgt accagcctat
     6361 gtgtttgcgt gcaatgcgca caccggcggt ctcaccataa aacgcgtgca tggcgcggac
     6421 gtggttcaaa atggcggcac tgcattctgc caaactcaag gcaggcggta aaacaccgtg
     6481 ttcggcgtaa tgtttcaaat cgcggaagaa ccacggtctg ccttgcgcgc cgcgccctat
     6541 catgatgccg tctgcggcgg tttgtttaag gacggcttgg gctttttgcg gcgaagtaat
     6601 gtcgccgttg acccaaaccg ggatgttcag acggcatttg gtttcggcaa tcaggtcgta
     6661 agccgcttcg cctttgtaca tttgcgtgcg cgtgcgtccg tggacggcaa gggcggcaat
     6721 gccgcaatct tcggcgattt tggcgatgac gggcaggttt ttgtggtcgt cgtgccaacc
     6781 caaacgggtt ttgagggtaa cgggtacgcc cgccgccttg accaccgctt ccaaaatggc
     6841 ggcaaccagc ggctcgttct gcatcagcgc gctaccggct tggacattgc agactttttt
     6901 agcgggacag cccatgttga tgtcgataag ctgcgcccca aggctgacgt tgtaacgcgc
     6961 ggcatccgcc atctgctgcg gatcgcttcc ggcaatctgc acggcaacaa tgccgccttc
     7021 atcggcaaaa tcgctgcggt gcaaggtttt tctagtattt ctgagcgtcg ggtcgctggt
     7081 cagcatttcg cacaccgccc aacctgcgcc aaaatctcgg caaagtcggc ggaacggttt
     7141 gtcggtaatg cccgccatcg gcgcaagtgc gatggggttg tcgataaaat agccgccgat
     7201 gtgcataatg ggtccgcgtt tcaaaaaagt gcgacattgt acatttttta agcaggattt
     7261 ccaatctccg gacgcgcccg cgattggggc gggcaccgtt ttatggcata atccgcacac
     7321 agatttcctg ccccgccact cacaggcggg ca
//
LOCUS       DAXHPV010000103         7325 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.103, whole genome shotgun sequence.
ACCESSION   DAXHPV010000103 DAXHPV010000000
VERSION     DAXHPV010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7325)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7325)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7325
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.103"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(190..2052)
                     /gene="hscA"
                     /locus_tag="ACFM6C_001475"
     CDS             complement(190..2052)
                     /gene="hscA"
                     /locus_tag="ACFM6C_001475"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HFC6158919.1"
                     /translation="MALLQISEPGMSAAPHRHRLAAGIDLGTTNSLVATVRSGSAACL
                     PDAEGRVTLPSVVRYLENGGIEVGKTALSAQKTDPLNTVSSAKRLIGRTLADLHQNTH
                     YLPYRFGDNQRVIELHTLQGVKTPVEVSAEILKTLKSRAEETLGGDLVGVVITVPAYF
                     DDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDNASEGTFVVYDLGGGTFDVSVL
                     QLTKGLFEVKATGGNSALGGDDFDHRLFCRLLEQNGLSQLNEQDSQLLLSLVRAAKEQ
                     LTTQTEARIQATLSDGMAIDTSISRAEFHNLTQHLVMKTLEPVKQALKDAGVGKNEVK
                     GVIMVGGSTRMLHVQQAVATFFGQTPLNNLNPDEVVALGAAIQANVLAGNKTDGEWLL
                     LDVTPLSLGLETYGGLAEKIIPRNSTIPTARAQDFTTFKDGQTAMTIHVVQGERELVA
                     DCRSLAKFTLRGIPPMAAGAARIRVTFQIDADGLLSVSAQEQSTGVHAQIEVKPSYGL
                     DDDTITQMLKDSMSNAAEDMAARARAEAVVEAESLTDAVNAALELDSDLLDAEELQQI
                     RQGIADLQGRLKDGKAEDIRAAAAKLGSITDNFAAKRMNRNIQRALTGQSVDNI"
     gene            2223..3095
                     /gene="hpnD"
                     /locus_tag="ACFM6C_001476"
     CDS             2223..3095
                     /gene="hpnD"
                     /locus_tag="ACFM6C_001476"
                     /EC_number="2.5.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016767 - geranylgeranyl-diphosphate
                     geranylgeranyltransferase activity [Evidence IEA];
                     GO_process: GO:0016117 - carotenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="presqualene diphosphate synthase HpnD"
                     /protein_id="HFC6158920.1"
                     /translation="MKGLDYCRQKAEESRSSFLSGFRFLTQEKRDAVTVLYAFCRELD
                     DVVDECSNPDVAQATLNWWRGDLDKVFGGAMPEHPVNQALRQVKETFKLPKYELEALI
                     DGMQMDLVRARYGSFEELKLYCRRVAGVVGCLIARILGFSDGKTLEYADKMGLALQLT
                     NIIRDVGEDARRGRIYLPMEEMQRFDVPASVILQCSPTGNFAELMAFQIKRARETYRE
                     AVSLLPAADKKAQKVGLVMAAVYYELLNEIDRDGAQNVLKYKIALPSPRKKRIALKTW
                     LFGFKPRPGTPERA"
     gene            3174..4487
                     /gene="hpnE"
                     /locus_tag="ACFM6C_001477"
     CDS             3174..4487
                     /gene="hpnE"
                     /locus_tag="ACFM6C_001477"
                     /EC_number="1.17.8.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxysqualene dehydroxylase HpnE"
                     /protein_id="HFC6158921.1"
                     /translation="MMNTPHPRPKIAVIGAGWAGLSAAVTLARHADVTLFEAGRQAGG
                     RARALAGNTDGFGFLDNGQHILLGAYRGVLRLMKTIGSDPRAAFLRVPLHWHMHGGLQ
                     FRALPLPAPLHILGGVLLARRAPTAFKAKLLADMSDLQKSARLGQPDTTVAQWLKQRN
                     VPRAAVMQFWQPLVWGALNTPLETASLRVLCNVLSDGVLTKKSGSDYLLPKQDLGAIV
                     AEPALADLQRLGADIRLETRVCRLNTLPDGKVLVNGEAFDAAVPATAPYHAAALLPEG
                     TPEHVQTAYQNLRYHAITTVYLRYAEPVRLPAPLTGLADGTVQWLLCRGRLGLPENEV
                     SAVISVSDRVGAFTNRAWADKVHADLKRILPHLGEPEAVRVITEKRATTAADAPPPDL
                     SWLHRHRIFPAGDYLHPDYPATLEAAVQSGFAAAETCLQSLSDAV"
     gene            4571..5290
                     /locus_tag="ACFM6C_001478"
     CDS             4571..5290
                     /locus_tag="ACFM6C_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HFC6158922.1"
                     /translation="MATLSNKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLE
                     KVYDAIVEAGHPEPFAIRFDLMSAEEKEFNQFAATIAEATQGKLDGIVHCAGYFYALS
                     PLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGETPKAYWGGF
                     GASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSHPGEAKSERKSYGDVL
                     PAFVWWASTESKGRSGEIVYL"
     gene            5455..6126
                     /locus_tag="ACFM6C_001479"
     CDS             5455..6126
                     /locus_tag="ACFM6C_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsgG/HfaB family protein"
                     /protein_id="HFC6158923.1"
                     /translation="MKTVSTAVVLAAAAVSLTGCATESSRSLEVEKVASYNTQYHGVR
                     TPISVGTFDNRSSFQKGIFSDGEDRLGSQAKTILVTHLQQTNRFNVLNRTNLNALKQE
                     SGISGKAHNLKGADYVVTGDVTEFGRRDVGDHQLFGILGRGKSQIAYAKVALNIVNVN
                     TSEIVYSAQGAGEYALSNREIIGFGGTSGYDATLNGKVLDLAIREAVNSLVQAVDNGA
                     WQPNR"
     gene            6136..6504
                     /locus_tag="ACFM6C_001480"
     CDS             6136..6504
                     /locus_tag="ACFM6C_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4810 domain-containing protein"
                     /protein_id="HFC6158924.1"
                     /translation="MNPKTLSRLSLCAAVLALTACGGNGQKSLYYYGGYPDTVYEGLK
                     NDDTSLGKQTEKMEKYFVEAGNKKMNAAPGAHAHLGLLLSRSGDKEGAFRQFEEEKRL
                     FPESGVFMDFLMKTGKGGKR"
     gene            6501..7148
                     /locus_tag="ACFM6C_001481"
     CDS             6501..7148
                     /locus_tag="ACFM6C_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF799 domain-containing protein"
                     /protein_id="HFC6158925.1"
                     /translation="MKPLILGLAAVLALSACQVQKAPDFDYTSFKESKPASILVVPPL
                     NESPDVNGTWGVLASTAAPLSEAGYYVFPAAVVEETFKQNGLTNAADIHAVRPEKLHQ
                     IFGNDAVLYITVTEYGTSYQILDSVTTVSAKARLVDSRNGKELWSGSASIREGSNNSN
                     SGLLGALVSAVVNQIANSLTDRGYQVSKTAAYNLLSPYSHNGILKGPRFVEEQPK"
BASE COUNT         1621 a         2125 c         2031 g         1548 t
ORIGIN      
        1 gaatcgttct ctttgagcta aggcgagcca acgctgtacc ggtttaaatt taattcacta
       61 tacacgccct tgatgacggt tttcatcgaa tagacaatgc ctgacttttc catatcgatg
      121 tttttcaagt gttttcgagc cttcagacgg catcaggtta tatctatgcc gtctgaaacc
      181 gtttaagtat caaatattat cgacactctg gcctgtcaac gcgcgttgga tgttgcggtt
      241 catgcgtttg gcggcgaaat tgtcggtaat actgccgagt ttggcggcgg cggcacggat
      301 gtcttcggct tttccgtctt tcagacggcc ttgcaaatcg gcgatgcctt gccgaatctg
      361 ttgcaattct tcggcatcca gcaaatcgct gtccaactcg agggcggcgt tgacggcatc
      421 ggtcaggctt tcggcttcga ccacggcttc ggcacgggcg cgtgccgcca tatcttcggc
      481 ggcattgctc atgctgtctt tgagcatttg ggtgatggtg tcgtcgtcca agccgtagga
      541 aggtttgact tcgatttgcg cgtgtacgcc ggtgctttgc tcttgggcgg aaacggacag
      601 cagcccgtcc gcatcgattt ggaaggttac gcggatacgc gccgcacccg ccgccatagg
      661 cggaatgccg cgcagagtga atttggcaag gctgcggcag tcggcaacca gttcgcgttc
      721 gccttgtacg acgtgtatcg tcatcgcggt ctgaccgtct ttgaaggtgg taaagtcctg
      781 cgcgcgcgcg gtggggatgg tggaattgcg cgggatgatt ttttccgcca agccgccgta
      841 ggtttccaaa ccgagcgaca aaggtgtaac gtccagcagc agccattcgc cgtcggtttt
      901 gttgcctgcg aggacgtttg cctgtatggc ggcgccgagc gcgacgactt cgtcgggatt
      961 gaggttgttc agcggggttt gtccgaagaa ggtggcgact gcctgttgaa cgtgcagcat
     1021 acgggtcgaa ccgccgacca taatcacgcc tttgacttcg tttttaccga caccggcatc
     1081 tttcaacgcc tgtttgaccg gctcgagcgt tttcatcacc aaatgctgcg tcaggttgtg
     1141 gaactcggcg cgactgatgc ttgtgtcgat tgccatgccg tctgaaagcg tcgcctgaat
     1201 gcgcgcttcg gtttgcgtgg ttaattgttc tttggcggcg cggacgagcg agagcaggag
     1261 ttggctgtct tgttcgttga gttgggagag tccgttttgt tcgagcaggc ggcagaacag
     1321 ccggtggtcg aaatcgtcgc cgcccaacgc gctgttgccg ccggtggctt tgacttcaaa
     1381 caggcctttg gtcagttgca atacggatac gtcgaatgta ccgccgccca agtcgtacac
     1441 gacaaacgta ccttccgagg cgttgtccag cccgtaggcg attgcggcgg cggtaggttc
     1501 gttgagcagg cgcaatacgt tcaaacccgc cagacgcgcg gcatctttag tggcctggcg
     1561 ttgcgcatcg tcgaaatagg cgggaacggt aatcaccacg ccgaccaaat cgccgcccaa
     1621 ggtttcttcg gcgcgcgatt taagggtttt gaggatttcc gccgacactt cgacaggcgt
     1681 tttcaccccc tgcagcgtat gcagttcgat aacgcgttga ttgtcaccga aacggtaagg
     1741 caggtaatgc gtattttgat gcagatcggc aagcgtccgc ccgataaggc gtttggcgga
     1801 gctgacggtg ttcagcgggt cggttttttg ggcggacagg gcggttttgc cgacttcaat
     1861 gccgccgttt tccagatagc ggacgacgga aggcagggta acgcgccctt cggcatcggg
     1921 cagacaggcg gcactgccgc tgcggacggt ggcgaccaag ctgttggtcg tacccaaatc
     1981 gatgcctgcc gccaaacggt gtcggtgcgg ggcggcggac atacccggtt ctgaaatctg
     2041 caaaagagcc ataaattctg cctgtcggtg cggtgtgtaa aggaaggaag tcggcatttt
     2101 aacagaattc gcgccgatag ttgagcaaac cgctaaggat tgggtcgtgc cgccgaaatt
     2161 gccctctacc gccaaatgcc gataaaatcc gcctttccct cccatcatta ggaatataaa
     2221 tcgtgaaagg actcgactat tgccgccaaa aagcagaaga aagccgctcc agttttttgt
     2281 cgggcttccg tttcctgact caggaaaaac gggatgcggt aacggtttta tatgcttttt
     2341 gccgcgaatt ggacgatgtg gttgacgaat gttccaaccc cgatgttgca caggcgacat
     2401 tgaactggtg gcgcggcgat ttggacaagg tattcggcgg cgcgatgccg gaacaccccg
     2461 tcaatcaggc cttgcggcag gttaaggaaa ccttcaagct gccgaaatat gaactggaag
     2521 ccttaatcga cgggatgcag atggatttgg ttcgggcgcg ttacggcagt tttgaagaat
     2581 tgaaactgta ctgccgccgt gttgcaggtg tagtcggctg cctgattgcg cggattttgg
     2641 ggttttcaga cggcaaaacg ctggaatacg ccgacaagat gggacttgcg ctgcaactga
     2701 ccaacatcat ccgcgatgtc ggcgaagacg cgcgcagggg acggatttac ctgccgatgg
     2761 aggaaatgca gcggtttgat gtccccgcaa gcgtgatttt gcaatgcagc ccgacgggca
     2821 attttgccga attgatggcg ttccaaatca aacgcgcccg tgaaacctac cgcgaagccg
     2881 tatcgctgct gccggctgcc gataaaaaag cccaaaaagt cggactggtt atggcggcgg
     2941 tttattacga gctattgaac gaaatcgacc gggacggcgc gcaaaacgtc ctcaaataca
     3001 aaatcgccct cccttcgccg cgcaaaaaac gcattgccct gaaaacctgg ttattcggat
     3061 tcaaaccgcg ccccggcacg ccggaacggg cataaggcgc ataccgcccg cccttcagga
     3121 aaacccaacc cccgccgccc cgaaaaacgg ggtttcaacc attggaggaa taaatgatga
     3181 acacgccgca tccgcgcccg aaaatcgccg tcatcggcgc aggctgggca ggactgtccg
     3241 ccgccgtcac cttggcgcgg cacgccgacg ttaccctgtt tgaagccggc cggcaggcgg
     3301 gcggcagggc gcgcgcactg gccggaaata ccgacggttt cggttttttg gacaacgggc
     3361 agcacatttt gctcggcgca taccggggcg tgttgcgcct gatgaaaacc atcggttcgg
     3421 atccccgtgc cgcctttttg cgcgtaccgc tgcactggca tatgcacggc ggtttgcagt
     3481 tccgcgccct ccccctgccc gcgccgctgc atattttggg cggcgtgctg cttgcccggc
     3541 gtgcaccgac tgcattcaaa gccaaactgc ttgccgatat gtccgatttg cagaagtccg
     3601 cacgcctcgg acagcccgac acgacagtgg cgcaatggct gaaacagcgg aacgtgccgc
     3661 gtgccgccgt gatgcagttt tggcagccct tggtttgggg cgcgctcaac acgcctttgg
     3721 aaaccgcaag cctgcgcgtg ttgtgcaacg ttttgtccga cggcgtgctg acgaaaaaat
     3781 ccggcagcga ctatctccta cccaagcagg atttgggcgc aatcgtcgcc gaacccgcct
     3841 tggcggatct tcaacggctc ggcgcggaca tccgcctcga aacgcgcgta tgccgtctga
     3901 acaccctccc ggacgggaaa gtgctcgtca acggcgaagc tttcgatgcc gccgtccccg
     3961 ccaccgcgcc ctaccacgcc gccgcgctcc tgcccgaagg cacgcccgaa cacgttcaga
     4021 cggcatatca aaaccttcgc taccacgcca tcaccaccgt ctatctgcgc tacgccgaac
     4081 ccgtccgcct gcccgccccg ctgaccggcc ttgccgacgg cacggtgcaa tggctgcttt
     4141 gccggggcag gctcggactg cctgaaaacg aagtgtccgc cgtcatcagc gtttccgacc
     4201 gcgtcggcgc gtttacaaac cgagcgtggg cggacaaagt tcacgccgac ctcaaacgca
     4261 tccttccgca tttgggcgaa cccgaagccg tgcgcgtcat caccgaaaaa cgcgccacaa
     4321 ccgcagccga tgccccgccg ccggatttgt cgtggctgca ccggcaccgc atcttccccg
     4381 ccggcgacta cctccacccg gactaccccg ccacgctcga agccgccgta caatcaggtt
     4441 tcgcggcggc ggaaacctgc ctgcaaagcc tgagcgatgc cgtctgaaaa cgccggctgg
     4501 tatcgggacg ctttacaagg tgcggcaaaa cgctaaaata cccccgaccg accaccaaaa
     4561 aggaaaaagt atggcgacac tgtccaacaa aaccatctta gttaccggcg catcgcaagg
     4621 tctgggcgaa caggtcgcca aagcctatgc ggcggcaggc gcaaccgtga ttctggtggc
     4681 acgccatcag aaaaaactgg aaaaagtcta tgacgcgatt gtcgaagccg gacaccccga
     4741 acccttcgcc atccgtttcg acctgatgag tgcggaagaa aaagaattca atcagttcgc
     4801 cgccaccatt gccgaagcca cgcaaggcaa actggacggc atcgtccact gcgccggcta
     4861 tttttacgcc ctctcgccgc tggatttcca aaccgtcgcc gaatgggtca accaataccg
     4921 catcaacacc gtcgcaccta tggggctgac ccgcgccctg ttcccgctgc tgaagcagtc
     4981 gcccgacgcg tccgtcatct tcgtcggcga aagccacggc gaaacaccca aagcctactg
     5041 gggcggcttc ggcgcgtcca aagccgcgtt gaactacctg tgcaaagtcg ccgccgacga
     5101 atgggaacgc ttcggcaacc tgcgcgccaa cgtcctcgtc cccggaccca tcaattcccc
     5161 gcaacgcatc aaatcccatc cgggcgaagc caaaagcgaa cgcaaaagct acggggacgt
     5221 gctgcccgca tttgtctggt gggcaagtac cgaaagcaaa gggcggagcg gcgaaatcgt
     5281 ttacctctaa atccggaaaa ggcaggcatc ccgcccgcgc cgcgattccg tttgaaaaat
     5341 atccgtactt tccgcgcgca tccgtcccgc acagacaaac accttgactt aaatttacat
     5401 aaggacaata atgataaccc gttatttcct taacttgacc ttagggtaaa ttttatgaaa
     5461 accgtttcca ccgccgttgt ccttgccgcc gctgccgttt cactgaccgg ctgtgcgacc
     5521 gaatcctcac gcagtctcga ggtagagaaa gtcgcctcct acaatacgca atatcacggt
     5581 gttcgtaccc cgatttccgt cggaacattc gacaaccgct ccagcttcca aaaaggcatt
     5641 ttctccgacg gggaagaccg tttgggcagc caggcaaaaa ccattctagt aacgcacctg
     5701 caacagacca accgcttcaa cgtactgaac cgcaccaatt tgaacgcatt aaaacaggaa
     5761 tccggcattt ccggcaaagc gcataacctg aaaggcgcag attatgtcgt taccggcgat
     5821 gtaaccgaat tcggacgcag agatgtcggc gatcatcagc tcttcggcat tttgggtcgc
     5881 ggcaaatcgc aaatcgccta tgcaaaagtg gctctgaata tcgtcaacgt caatacttcc
     5941 gaaatcgtct attccgcaca gggcgcgggc gaatacgcac tttccaaccg tgaaatcatc
     6001 ggtttcggcg gcacttccgg ctacgatgcg actttgaacg gcaaagtttt agacttggca
     6061 atccgcgaag ccgtcaacag cctggttcag gctgttgaca acggcgcatg gcaacccaac
     6121 cgttaaggag aaatgatgaa tccgaaaacc ttgagccgtt tgtcgctgtg tgcggcggtc
     6181 ttggctctga ccgcctgcgg cggcaacggg caaaaatccc tgtattatta cggcggctat
     6241 cccgataccg tctatgaagg tttgaaaaac gacgacactt cgttgggcaa gcagaccgaa
     6301 aagatggaaa aatactttgt ggaagccggc aacaaaaaaa tgaatgccgc cccgggtgcg
     6361 cacgcccatc tgggactgct gctttcccgt tcgggagaca aagagggcgc gttccgccag
     6421 tttgaagaag agaaaaggct gtttcccgaa tcgggcgtat ttatggactt cctgatgaaa
     6481 accggtaaag gaggcaagcg atgaaacctt tgattttagg gcttgccgcc gtgttggcgc
     6541 tgtctgcctg ccaagttcaa aaagcgcccg atttcgacta cacgtcattc aaggaaagca
     6601 aaccggcttc aattttggtg gttccgccgc tgaacgaatc gcccgatgtc aacggaacat
     6661 ggggtgtact ggcttcgacc gccgctccgc tttccgaagc cggctattac gtcttccccg
     6721 ccgcagtcgt ggaggaaacc ttcaaacaaa acggcttgac caatgccgcc gatattcacg
     6781 ccgtccggcc ggaaaaactg catcagattt tcggcaatga tgcggttttg tacattacgg
     6841 ttaccgaata cggcacttca tatcaaattt tagacagcgt gacgaccgta tccgccaaag
     6901 cacggctggt cgattcccgc aacggaaaag agttgtggtc gggttcggcc agcatccgcg
     6961 aaggcagcaa caacagcaac agcggcctgt tgggggcttt ggtcagcgca gtggtcaatc
     7021 agattgccaa cagcctgacc gaccgcggtt atcaggtttc caaaaccgcc gcatacaacc
     7081 tgctgtcgcc ctattctcac aacggcatct tgaaaggtcc gagattcgtt gaagagcagc
     7141 ccaaataagc atatgccgtc tgaacctctc cgagcttcag gcggcatatg cgaatcttga
     7201 tacttgcaag ccgcaccgcc caaaatcggg cagccggttt caatatccga acaaggttcg
     7261 ggttctgtat tttgcagaac ccgaaccttt tattcaaatt taaacttaat tccggcgtgg
     7321 ttgta
//
LOCUS       DAXHPV010000104         7204 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.104, whole genome shotgun sequence.
ACCESSION   DAXHPV010000104 DAXHPV010000000
VERSION     DAXHPV010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7204)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7204)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7204
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.104"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(63..147)
                     /locus_tag="ACFM6C_001482"
     tRNA            complement(63..147)
                     /locus_tag="ACFM6C_001482"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(111..113),aa:Leu,seq:caa)
     gene            424..1077
                     /locus_tag="ACFM6C_001483"
     CDS             424..1077
                     /locus_tag="ACFM6C_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HFC6158926.1"
                     /translation="MFSVPRSFLPGVFVLAALAACKPQDNSAAQAASSSASASAAENA
                     AKPQTRGTDMRKEDIGGDFTLTDGEGKPFSLSDLKGKVVILSFGFTHCPDVCPTELLT
                     YSDTLKQLGGQAKDVKVVFVSIDPERDTPEIIGKYAKQFNPDFIGLTATGDQNLPVIK
                     QQYRVVSAKVNQKDDSENYLVDHSSGAYLIDKNGEVAIFSPYGSEPETIAADVRTLL"
     gene            1156..1809
                     /gene="hisG"
                     /locus_tag="ACFM6C_001484"
     CDS             1156..1809
                     /gene="hisG"
                     /locus_tag="ACFM6C_001484"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HFC6158927.1"
                     /translation="MQDNALTIALSKGRIFEETLPLLAAAGIVPTEEPEKSRKLIIGT
                     NHENIRLVIVRATDVPTYVRYGAADFGIAGKDVLIEHGGTGLYRPLDLEIAKCRMMVA
                     VRKGFDYEAASQPGCRLKIATKYPEIAASHFAGKGVHVDIIKLYGSMELAPLVGLSDA
                     IVDLVSTGNTLKANGLEAVEHIVDISSRLVVNKAALKTKYALLEPIIQAFGGAVKAK"
     gene            1913..2812
                     /locus_tag="ACFM6C_001485"
     CDS             1913..2812
                     /locus_tag="ACFM6C_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HFC6158928.1"
                     /translation="MVAKIKKFSDSTLSVLNNGERRFYVYCLTDLKKDKILYIGKGCG
                     NRIFEHEWVASRSQDPVSGEIIDRKLKAISKCKKLGRYIISYHLTEVEALAAESALIH
                     FVKSVLGKKLKNKIAGHGPGGISVEELDRRFGFSSLPLNEINPDGLILAIKIHNAFDL
                     DTDEELDYLFDNQDDANLKSRTLGNWVIGKDVASKVKYVIGVHTGLQNAVVSAYEVDG
                     FETMVEETKNGRKQSRYRFRTTSRSEEVLAKLGLQQKCLPELKFGSGGEKAYIRPKTE
                     TETEQENIQTTPNPKIKKEKTKS"
     gene            2809..4098
                     /gene="hisD"
                     /locus_tag="ACFM6C_001486"
     CDS             2809..4098
                     /gene="hisD"
                     /locus_tag="ACFM6C_001486"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HFC6158929.1"
                     /translation="MKKLNTQSPDFQAGLKALLAFETAQNPETERIVADICADVQKRG
                     DAALIEYTNKFDQTNAKSIDDLILTQADLKAAFERIPNDVQTALQTAALRVESYHQRQ
                     KMESWSYTDEDGTLLGQQITPLDRVGIYVPGGKAAYPSSVIMNAMPAHVAGVKEIIMV
                     VPTPKGERNDIVLAAAYVAGVTKVFTVGGAQAVAALAYGTETIPQVDKITGPGNAFVA
                     AAKRRVFGVVGIDMVAGPSEILVIADGTTPADWVAMDLFSQAEHDEIAQAILIGTSQA
                     YLDEVEAAMDRLIETMPRRDIIEASLGNRGAMILAKDLDEACEIANYISPEHLELSVE
                     NPQEWAKKIRHAGAIFMGRYTGESLGDYCAGPNHVLPTSRTARFSSPLGTYDFQKRSS
                     LIQVSEQGAQKLGETASVLAHGESLTAHARAAEFRMK"
     gene            4144..5241
                     /gene="hisC"
                     /locus_tag="ACFM6C_001487"
     CDS             4144..5241
                     /gene="hisC"
                     /locus_tag="ACFM6C_001487"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HFC6158930.1"
                     /translation="MKSVRSFIRDDIQAMSAYQIADVPPGFAKLDSMESPVHPFAGHE
                     TLLQEWQARLAAAPIHLYPNPSGSGLQEALRSAFDIPDCADIALGNGSDELIQFITML
                     TAKPGAAMLAAEPSFVMYRHNAALYGMDYVGVPLNGDFTLNLPAVLEAVRKHRPALTF
                     IAYPNNPTGVCFTRAEIEAVIEASDGIVVVDEAYGAFNGDSFLPQAGSIPNLIVMRTV
                     SKIGFAGLRIGYAAGCPEVIGELQKILPPYNMNQLSLTTAKLALQHYGIISANIDSLK
                     NERERMFAELGKICRLNTFPSQANFITIRVPDADLLFDTLKQNRILVKKLHGAHPLLE
                     HCLRITVGSPAQNDAVLNIIRQLYCQPTDFL"
     gene            5238..6155
                     /gene="hisB"
                     /locus_tag="ACFM6C_001488"
     CDS             5238..6155
                     /gene="hisB"
                     /locus_tag="ACFM6C_001488"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HFC6158931.1"
                     /translation="MNLTKTQRQLHNFLTLAQEAGSLSKLAKLCGYRTPVALYKLKQR
                     LEKQAEDPDARGIRPSLMAKLEKHTGKPKGWLDRKHRERTVPETAAESTGTAETQIAE
                     TASAAGCRSVTVNRNTCETQITVSINLDGSGKSRLDTGVPFLEHMIDQIARHGMIDID
                     ISCKGDLHIDDHHTAEDIGITLGQAIRQALGDKKGIRRYGHSYVPLDEALSRVVIDLS
                     GRPGLVYNIEFTRALIGRFDVDLFEEFFHGIVNHSMMTLHIDNLSGKNAHHQAETVFK
                     AFGRALRMAVEHDPRMAGQTPSTKGTLTA"
     gene            6250..7119
                     /locus_tag="ACFM6C_001489"
     CDS             6250..7119
                     /locus_tag="ACFM6C_001489"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HFC6158932.1"
                     /translation="MSANEYAQIGWIGLGQMGLPMVTRLLDGGIEVGVYNRSPDKTAP
                     ISAKGAKVYGNTAELVRDYPVIFLMVSDYAAVCDILNGVRDGLAGKIIVNMSTISPTE
                     NLAVKALVEAAGGQFAEAPVSGSVGPATNGTLLILFGGSEAVLNPLQKIFSLVGKKTF
                     HFGDVGKGSGAKLVLNSLLGIFGEAYSEAMLMARQFGIDTDTIVEAIGGSAMDSPMFQ
                     TKKSLWANREFPPAFALKHASKDLNLAVKELEQAGNTLPAVETVAASYRKAVEAGYGE
                     QDVSGVYLKLAEH"
BASE COUNT         1880 a         2126 c         1723 g         1475 t
ORIGIN      
        1 tagtcttatc tatttcatta aacagcaata gacaaaaaaa ataaccgctc caaaagcggt
       61 tgtggtgccc agggtcggac tcgaaccgac acaccttgcg gcgggggatt ttgagtcccc
      121 tgcgtctacc aatttcgcca cctgggctgg tgaagaagtc gtcattataa tggcttttga
      181 aattctgtaa accttttttt tgaaattatt ttatctgttt ttattttatt tttgatttta
      241 aatagaattt ttattatttt aatcttactg ttctttccgc tccaaagatt ctgtatgatt
      301 cggcaattcc tgccgtgcag acaacgtaaa aaaatactac attaaatctg ccaaacgcgt
      361 taagatggaa atattcaaat tccgtacgaa tcaggttttg ctatttattc ttgggagatt
      421 gtcatgtttt ccgtaccgcg ttcctttttg ccgggcgttt tcgtacttgc cgcgcttgcc
      481 gcctgcaaac ctcaagacaa cagtgcggcg caagccgctt cttcaagtgc atccgcgtca
      541 gctgcggaaa atgcggcaaa gccgcaaacg cgcggtacgg atatgcgtaa ggaagacatc
      601 ggcggcgatt tcacgctgac cgacggcgaa ggcaagcctt tcagcctgag cgatttgaaa
      661 ggcaaggtcg tgattctgtc tttcggcttt acgcactgtc ccgatgtctg cccgacagag
      721 cttttgacgt acagcgacac gttgaagcag ttgggcgggc aggctaagga cgtgaaagtg
      781 gtgttcgtca gcatcgatcc ggaacgcgac acgcctgaaa tcatcggcaa gtatgccaaa
      841 cagttcaatc cggactttat cggtctgacg gcaacgggcg accaaaacct gccggtcatc
      901 aagcagcaat accgcgtggt ttctgccaaa gtcaatcaaa aagacgacag cgaaaactat
      961 ttggtcgacc actcttccgg tgcgtatctc atcgacaaaa acggtgaggt tgccattttc
     1021 tcgccttacg gaagcgagcc ggaaacgatt gctgccgatg taaggaccct gctctgataa
     1081 aaccgtatgc cgtctgcacc gtcggcgcct gttcagacgg cattattgtt tcaaccgaca
     1141 aaggacatcc acaccatgca ggataatgct ttgaccatcg ccttatccaa ggggcgcatt
     1201 tttgaggaga cgctgccgct gcttgccgct gccggcattg ttccgactga agagcctgaa
     1261 aaatcgcgca agctgattat cgggacgaac catgaaaaca tccgccttgt cattgtccgc
     1321 gcaaccgatg tgccgactta tgtccgctac ggcgcggcgg acttcggcat tgcgggcaaa
     1381 gacgtgctga tcgaacacgg cggcacgggg ctttaccggc ctttggattt ggagattgcc
     1441 aagtgccgca tgatggttgc tgtgcgtaaa gggtttgatt acgaagcagc ttcgcaaccc
     1501 ggatgccgtc tgaagattgc cacaaagtat cctgaaatcg cggcatccca ttttgccggc
     1561 aagggtgtcc atgtggacat tatcaaactg tacggctcga tggaacttgc gccgctggtc
     1621 ggcttgagcg atgcgattgt ggacttggtt tcgacgggca acaccttgaa ggcaaacggc
     1681 ttggaagcag tcgaacacat cgtcgacatt tccagccgcc tggtggtcaa caaggctgct
     1741 ttgaaaacga aatacgcgct gctggagccg attattcagg cgttcggcgg cgcagtgaag
     1801 gcgaagtaag catccatttg aataaagatg cgttttcaga cgaccctatc cgttcccgcc
     1861 gacaggtcgt ctgaaaatat caccggcagt aaactgtata ggagaagtta aaatggttgc
     1921 aaaaataaaa aaattctcag attcaaccct ttccgttttg aataacggcg agcgtcggtt
     1981 ttatgtctat tgtctgaccg acctgaaaaa agacaaaatc ctctacatcg gcaaaggctg
     2041 cggtaatcgt atcttcgagc atgaatgggt tgctagtcgt tcacaagacc cagtctccgg
     2101 cgagattatc gatcggaaac tcaaagccat ctccaaatgc aagaaactcg gtcgctatat
     2161 catcagctat catctgactg aagtcgaagc actcgccgcc gaatctgcct taattcattt
     2221 tgttaaatct gtcttgggta aaaaactcaa aaataaaatt gccgggcatg gtccgggtgg
     2281 tattagcgta gaagaactag atcgccgctt tggattctct tctctcccac ttaacgagat
     2341 taaccccgac gggctgattc tcgccatcaa aatccacaat gctttcgatt tagatactga
     2401 cgaagaatta gactaccttt tcgacaacca agacgatgcc aacctcaaat cgcgtacgtt
     2461 gggcaactgg gttatcggta aagatgttgc ttcaaaagtg aaatacgtta tcggcgttca
     2521 caccggtctg caaaacgctg ttgtcagtgc atacgaagtg gacggttttg aaacaatggt
     2581 tgaggaaacc aaaaacggta gaaaacaatc ccgttaccgt ttccgcacta cctctcgtag
     2641 cgaagaggta ttagccaaac tcggtctgca acaaaaatgc ctgcccgaat tgaagtttgg
     2701 tagcggggga gaaaaagcgt atatcagacc caaaacagag acagaaactg aacaagagaa
     2761 tattcagacg acccccaatc caaaaataaa aaaggaaaaa accaaatcat gaaaaaactc
     2821 aacacccaat cgcccgattt ccaagccgga ctcaaagccc tgctggcttt tgaaaccgcg
     2881 caaaaccccg aaaccgaacg catcgtcgcc gacatttgcg ccgacgtgca aaagcgcggc
     2941 gatgcggctt tgattgaata caccaacaaa ttcgatcaga caaacgctaa aagcatcgat
     3001 gatttaatac ttacgcaagc cgatttgaaa gcggcgttcg agcgcattcc gaacgacgtt
     3061 cagacggcat tgcagaccgc cgccctccgt gtcgaaagct accaccaacg ccaaaaaatg
     3121 gaatcgtgga gctacaccga tgaagacggc acgctgttgg gacaacagat taccccgctt
     3181 gaccgcgtcg gcatttacgt ccccggcggc aaggcggcat atccgagttc cgtcatcatg
     3241 aacgccatgc ccgcccacgt cgcaggcgtg aaagaaatta ttatggtcgt gccgacaccg
     3301 aaaggcgaac gcaacgacat cgtgcttgcc gccgcatacg tcgccggcgt aaccaaagtc
     3361 ttcaccgtcg gcggcgcgca ggcggttgcc gccctcgcct acggcacgga aaccatcccc
     3421 caagtcgata aaatcaccgg tccgggcaac gccttcgtcg ccgccgccaa acgccgcgtg
     3481 ttcggcgtgg tcggcatcga catggtggcg gggccgtctg aaatcttggt catcgccgac
     3541 ggcacgacac ctgccgattg ggtggcgatg gatttgttca gccaggccga acacgacgaa
     3601 attgcccaag ccatcttaat cggcacgtcg caagcgtatc tcgacgaagt agaagccgct
     3661 atggacaggc tcatcgaaac catgccgcgc cgcgacatca tcgaagcctc gctcggcaac
     3721 aggggcgcga tgatactcgc caaagacttg gacgaagcct gcgaaatcgc caactacatt
     3781 tcccccgaac acttggaatt gtcagtcgaa aatccgcagg aatgggcgaa aaaaatccgc
     3841 cacgccggcg cgattttcat gggacgctac accggcgaaa gcctcggcga ctactgcgcc
     3901 ggcccaaacc atgtgttgcc caccagccga accgcccgct tttcctcgcc tttggggaca
     3961 tatgatttcc aaaaacgctc cagcctgatt caggtttcgg aacagggcgc gcaaaaatta
     4021 ggcgaaaccg ccagcgtgct ggcacacggc gaaagcctga ccgcccacgc ccgcgcggca
     4081 gagttccgta tgaaataatg ccgaaacggc gtacaggcat attccaacca ttaaggaaac
     4141 acgatgaaat ccgtccgctc cttcatccgc gacgacatac aagctatgtc ggcatatcag
     4201 attgccgacg ttccgcccgg ctttgccaaa ctcgattcga tggaaagtcc cgtccaccct
     4261 tttgccggac atgaaacgct gttgcaggaa tggcaggcac ggcttgccgc cgcgcccatc
     4321 catctttacc ccaatccctc cggcagcggt ttacaggaag cattacgttc ggcgttcgac
     4381 attcccgact gcgccgacat cgcgctgggc aacggctcgg acgagctgat acagttcatc
     4441 acgatgctga ccgccaaacc gggcgcggca atgttggcag ccgaacccag tttcgtcatg
     4501 taccgccaca acgccgcgct gtacggcatg gattatgtcg gcgttccact gaacggagat
     4561 ttcaccctca acctgcccgc cgtcctcgaa gccgtcagga agcaccgccc tgccctgacc
     4621 tttatcgcct accccaacaa ccccaccggc gtatgtttca cgcgtgccga aatcgaagcc
     4681 gtcatcgaag cttcagacgg catcgtcgtc gtcgacgaag cctacggcgc attcaacggc
     4741 gacagcttcc tgccgcaggc gggcagcatt cccaacctca tcgtcatgcg taccgtcagc
     4801 aaaatcggtt ttgccggact gcgtatcggc tatgcggcag gctgtcccga agtcatcggc
     4861 gaactgcaaa aaatcctgcc gccctacaat atgaaccaac tgagcctgac caccgccaaa
     4921 ctcgccctgc aacactacgg catcatctct gccaacatcg acagcctgaa aaacgaacgc
     4981 gaacggatgt tcgccgaatt gggcaaaata tgccgtctga acacctttcc aagtcaggca
     5041 aacttcatta ccatacgcgt acccgatgcc gatttgttgt ttgacacgct caaacaaaac
     5101 cgcatcttgg ttaaaaaact gcatggcgcg cacccgcttt tggaacactg cctgcgcatt
     5161 accgtaggca gccccgcaca aaacgatgcc gttctcaaca tcattcgcca actttactgc
     5221 caaccaacgg atttcctatg aatttgacta aaacacaacg ccaactgcac aactttctga
     5281 ccctcgccca agaagcaggt tcgctgtcca agctcgccaa actctgcggc taccgcaccc
     5341 ccgtcgcact ctacaaactc aaacaacgcc ttgaaaagca ggcagaagac ccagatgcac
     5401 gcggcatccg tcccagcctg atggcaaaac tcgaaaaaca caccggcaaa cccaaaggct
     5461 ggctcgacag aaaacaccgc gaacgcactg tccccgaaac cgccgcagaa agcaccggaa
     5521 ctgccgaaac ccaaattgcc gaaaccgcat ctgctgccgg ctgccgcagc gttaccgtca
     5581 accgcaatac ctgcgaaacc caaatcaccg tctccatcaa cctcgacggc agcggcaaaa
     5641 gcaggctgga taccggcgta cccttcctcg aacacatgat cgaccaaatc gcccgccacg
     5701 gcatgattga catcgacatc agctgcaaag gcgacctgca catcgacgac caccacaccg
     5761 ccgaagacat cggcatcaca ctcggacaag caatccggca ggcactcggc gacaaaaaag
     5821 gcatccgccg ttacggacat tcctacgtcc cgctcgacga agccctcagc cgcgtcgtca
     5881 tcgacctttc cggccgcccc ggactcgtgt acaacatcga atttacccgc gcactaatcg
     5941 gacgtttcga tgtcgatttg tttgaagaat ttttccacgg catcgtcaac cacagtatga
     6001 tgaccctgca catcgacaac ctcagcggca aaaacgccca ccatcaggcg gaaaccgtat
     6061 tcaaagcctt cgggcgcgcc ctgcgtatgg cagtcgaaca cgacccgcgc atggcaggac
     6121 agaccccctc gaccaaaggc acgctgaccg cataaaaaac cataccgtct gaaacaccct
     6181 caggcttttc agacggtatc ggaacagata agattacact acactacaaa cagaaaagga
     6241 gtaaacatca tgtccgcaaa cgaatacgca caaatcggct ggataggctt agggcaaatg
     6301 ggtctgccta tggtaacgcg gctcttggac ggcggcatcg aagtcggcgt atacaaccgc
     6361 tcgcccgaca aaactgcccc catctccgcc aaaggcgcaa aagtttacgg caacaccgcc
     6421 gaactcgtcc gcgactatcc cgtcattttc ctgatggttt ccgactatgc cgccgtgtgc
     6481 gacatcctga acggagtccg cgacggattg gccggcaaaa tcatcgtcaa catgagcacc
     6541 atctccccga ccgaaaacct cgccgtcaaa gcacttgtcg aagccgcagg cggacagttt
     6601 gccgaagcac ccgtttccgg atcggtcggg cccgccacca acggcacgct gctgattctg
     6661 ttcggcggca gcgaagccgt tttaaacccg ctgcaaaaaa tattttccct cgtcggcaaa
     6721 aaaaccttcc atttcggcga tgtcggcaaa ggttcgggcg cgaaactcgt cttgaactcg
     6781 ctcttgggca ttttcggcga agcgtacagc gaagcgatgc tgatggcgcg gcagttcggc
     6841 atcgataccg acaccatcgt cgaagccatc ggcggctcgg caatggactc gcccatgttc
     6901 caaaccaaaa aatccctgtg ggcaaaccgc gaattcccgc ccgccttcgc cctcaaacac
     6961 gcctccaaag acctcaacct cgccgtcaaa gagcttgaac aggcaggcaa caccctgccc
     7021 gccgtcgaaa ccgttgctgc cagctaccgc aaagcagtcg aagccggcta cggcgaacag
     7081 gacgtttccg gcgtttacct gaaactggca gaacactgac ttccctttcc aaacaatatg
     7141 ccgtctgaaa tattttcaga cggcattttt atcgccccac gcttaaaatc agtcccgatt
     7201 atga
//
LOCUS       DAXHPV010000105         7134 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.105, whole genome shotgun sequence.
ACCESSION   DAXHPV010000105 DAXHPV010000000
VERSION     DAXHPV010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7134)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7134)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7134
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.105"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            446..973
                     /locus_tag="ACFM6C_001490"
                     /pseudo
     CDS             446..973
                     /locus_tag="ACFM6C_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239390.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Replication initiation factor family protein"
     gene            1047..1349
                     /locus_tag="ACFM6C_001491"
     CDS             1047..1349
                     /locus_tag="ACFM6C_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158933.1"
                     /translation="MGYRVGINCFDTRLQADDYLLSSLPPTVTQDGKIIRPERVGDKW
                     ILNGKPVTLSYPECSNFEQIKQGSYVGSTVLILFVVIYGFRLLINFLKDIGKVGTD"
     gene            1696..3327
                     /locus_tag="ACFM6C_001492"
     CDS             1696..3327
                     /locus_tag="ACFM6C_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IgG-binding virulence factor TspB family
                     protein"
                     /protein_id="HFC6158934.1"
                     /translation="MFIILGRNFLKIILCFSFFVSKFALASVNAPGKFDRVEVYDDGR
                     YLGIRGSDDKRRRIWKGVFDRESGRYLTSEAQDLKVRHVSTGASSTGKVSSVVSSSVS
                     RAGVLAGVGKLARLGAKLSTRAVPYVGTALLAHDVYETFKEDIQARGYQYDTETDKFV
                     KGYEYSNCLWYEDERRINRTYGCYGVDSSIMRLMSDYSRFPEVKELMESQMYRLARPF
                     WNWHKEELNKLSSLDWNNFVLNSCTFDWNGGDCSVNKGDDFRNGANFSLIRNPKYKEE
                     MDAKKLEEILSLKVDANPDKYIKATGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVV
                     ATFGRDSQGNTTVDVQVIPRPDLTPGSAEAPNAQPLPEVSPAENPANNPNPNENPGTS
                     PNPEPDPDLNPDANPDTDGQPGTRPDSPAVPGRTNGRDGKDGKDGKDGGLLCKFFPDI
                     LACDRLPESNPAEDLNLPSETVNVEFQKSGIFQDSAQCPAPVTFTVTVLDSSRQFAFS
                     FENACTIAERLRYMLLALAWAVAAFFCIRTVSREV"
     gene            4272..4556
                     /locus_tag="ACFM6C_001493"
     CDS             4272..4556
                     /locus_tag="ACFM6C_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2523 domain-containing protein"
                     /protein_id="HFC6158935.1"
                     /translation="MKLLAALIPLLMSVAGRILTALGLMAVTYSGVDRLVAHFQQAIT
                     NSITGAPQAMLQLFYISGGGTVLNILFGAIAFILSFKQMTKLATSIGKKK"
     gene            4557..5744
                     /locus_tag="ACFM6C_001494"
     CDS             4557..5744
                     /locus_tag="ACFM6C_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zonular occludens toxin domain-containing
                     protein"
                     /protein_id="HFC6158936.1"
                     /translation="MAEICLITGTPGSGKTLKMVSMMAGDEMFKPDENGIRRKVFTNI
                     KGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPENIGSIVIVDEAQDVWPARSA
                     GSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMGMRTLLEW
                     KICADDPVKMASSAFSSIYTLDKKVYDLYESAEVHTVNKVKRSKWFYTLPVIVLLIPV
                     FVGLSYKMLSSYGKKQEEPAAQESAATEQQAVLPDKTEGEPVNNGNLTADMFVPTLTE
                     KPESKPIYNGVRQVKTFEYIAGCVQGGRTGCTCYSHQGTALKEVTELMCKDYVKNGLP
                     FNPYKEESQGQEVRQSAQQHSDRAQVATLGGKPLQNLMYDNWQERGKPFEGIGGGVVG
                     SAN"
     gene            5959..6915
                     /locus_tag="ACFM6C_001495"
     CDS             5959..6915
                     /locus_tag="ACFM6C_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003694155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110-like element ISNgo3 family transposase"
                     /protein_id="HFC6158937.1"
                     /translation="MNIIGLDISKDTIDATLHKTNGSIHYIKFKNNDDGLKQFRLWIK
                     GNRIRKAYIGMEATGIYYEKAADMLSSYYTVYVINPLKIKDYGKSRFNRTKTDKADSN
                     LIADYIKRHQDTLIPYQIPKNKALQKLINLKNQLHQHQKQIKNRLHSTEEDFIRNIHQ
                     DLIDTIQDKMEQVKIAISEQIKKQTDNNHYRNLQTIPSIGKDTASVLYAQLTEKHFKT
                     ANQFVSYAGLSPAIIQSGTSVRGRGRLSRYGNRRLKSTLYMPALCAYRFNAFPKLINN
                     LKKAGKPKMVIIVAIMRKLAKLAYYIVKTGQPYDAERHRLNQ"
BASE COUNT         2161 a         1477 c         1728 g         1768 t
ORIGIN      
        1 atatgatgcg ctctatcaaa ggggcgcatt aattttctta acattcccct ttgacagcca
       61 agtgaaaggg gcttttttat gtcagcagta aatgtaatat tttcctgttc ttattggaga
      121 atatttaaaa aatcagattc ttgtgttttg tgtttttatc agttcagaca tggcgaaccg
      181 cataaactca ttaatcaaga gaatttttca aagctttatc aggcgttcga ttatatagat
      241 tcggttggtt cgaattttcc agtgattatc acaacggatg gttgtggtct tttttgttga
      301 tctttaaaag tttgtcagga tttggctttc ggtcgttgac cgtcgtacgc gctttagcgc
      361 ggaaaactgg aaacggctga aagccccccc cttgactaac agggggggag cgaaattaaa
      421 aaccaattcc aagagtagtg aacgaatgag tgaagttgaa tatttctcac actttatatc
      481 ggacggaaaa gggaagcttt tagaaattcc gcagcgaaga ggtaagcaag acggggtttt
      541 tgttgattgg atttcattca cattccatga agatacttta ctgaaagttt ccggttgccc
      601 tttattttct gatgctgaat acatgtatgt attaagcaga aagctggaag aaattctagg
      661 ttttggcata acgcgcaaat gcaaatcaag gggcaacaaa ttctatgaat ccatgtatag
      721 gttaggttcg gatgatgttg attatggaga ggtgcatttc ggaggtcagc gcaatactgt
      781 tttagttgag ttgaaaggta ctggttgcag cgttgcaagt ccgggttggg agttgaggct
      841 aaagcagttt ctcgatgatt cggtaaggac aagaataacg cgaattgacc tagcacttga
      901 tttttttgat ggagagtaca cgccggatca ggcgttgtta gatcacgata atggtttttt
      961 tgataacagc aatcaaaggc ttcaagatgg cttggagcat gatcaaatct gtcaaataaa
     1021 cagagtgaag aaaaaggggc gcataaatgg gctatcgtgt cggcataaat tgttttgata
     1081 caagattgca ggcagacgac tatttattgt cgtcccttcc tcctactgtt acccaggacg
     1141 gaaaaatcat caggccggaa agggtgggcg ataaatggat tttgaacgga aagccggtta
     1201 cgttgtctta tccggaatgt tccaattttg agcagataaa gcaaggttct tatgtcggtt
     1261 cgacggttct aattctgttt gtagtcattt acggtttcag gcttctgatt aattttttaa
     1321 aagacatagg caaggttggg actgattgat gattatagat ttctggtttc ttctcggttt
     1381 cttcttggct ttgtctgttg cttggctgtt ttggtaacgg ttggtagaat cggcttttta
     1441 gagtgtttta aaaggtccga attatgttta tttctgaata tcatttagtt aaatttcaaa
     1501 ctgattcaca tatttataga gatttaccac aagcgttaat ttattatagg gaattgatta
     1561 gaaaaggggt ttttaaaact tcgttttcat ttgatatttt taggaatttc tttcatcgtt
     1621 atgatagaga ttttatagaa attcaattcc ctgattcttc tacattatta attaaattag
     1681 atgaagcaaa atgttatgtt tattatccta gggcgaaatt ttttaaagat tatcctatgc
     1741 tttagttttt ttgtatctaa atttgcattg gcatcagtaa atgctccggg taaatttgat
     1801 agggttgaag tttatgatga tggcagatat ttaggtattc gaggttcaga tgacaaaaga
     1861 agaagaattt ggaaaggtgt atttgataga gaatcgggaa gatatttaac ttcagaagct
     1921 caagatttaa aagttaggca tgtatctact ggagcatcaa gtacgggtaa agttagttcg
     1981 gttgtatctt catcagtttc ccgcgctggc gtattggcgg gggtcggcaa acttgcccgc
     2041 ttaggcgcga aattaagcac aagggcggtt ccctatgtcg gaacagccct tttagcccat
     2101 gacgtatacg aaactttcaa agaagacata caggcacgag gctaccaata cgacaccgaa
     2161 accgacaaat ttgtaaaagg ctacgaatat agtaattgcc tttggtacga agacgaaaga
     2221 cgtattaata gaacctatgg ctgctacggc gttgacagtt cgattatgcg ccttatgtcc
     2281 gattacagca gattccccga agttaaagaa ttgatggaaa gccaaatgta taggctggca
     2341 cgtccgtttt ggaattggca taaagaagaa ctgaataaat taagttcttt ggattggaat
     2401 aattttgttt taaatagttg cacatttgat tggaacggcg gagattgttc ggtcaataaa
     2461 ggtgatgatt tcagaaatgg ggctaatttt tcccttatcc gcaatccgaa atacaaagaa
     2521 gaaatggatg ccaaaaagct ggaagagatt ttatcgttga aagtcgatgc caatcccgac
     2581 aaatacataa aggcaaccgg ttatcccggt tattccgaaa aagtagaagt cgcacccgga
     2641 acaaaagtga atatgggtcc cgtcacggac aggaacggga atcccgttca ggttgtcgca
     2701 acattcggca gggattcgca aggcaacacc acggtggatg ttcaagtaat cccgcgtccc
     2761 gacttgaccc ccggaagcgc ggaagcaccg aacgcacagc cgctgcccga agtatcgccc
     2821 gccgaaaacc ccgcaaacaa cccgaacccc aatgagaacc ccggcacgag ccccaatccc
     2881 gaacccgacc ccgatttgaa tcccgatgca aatcccgata cggacggaca gcccggcaca
     2941 agacccgatt cccccgccgt tccgggacgc acaaacggca gggacggcaa agacggaaag
     3001 gacggcaaag atggcggcct tttgtgcaaa ttcttccccg acattctcgc ttgcgacagg
     3061 ctgcccgagt ccaatccggc agaagattta aatctgccgt ctgaaaccgt caatgtagag
     3121 tttcagaaat caggaatctt tcaagattcc gcacagtgtc ccgcacctgt cactttcaca
     3181 gtgactgtgc ttgattcaag caggcagttc gcgttcagct ttgagaacgc atgtaccata
     3241 gccgaacggc taaggtacat gcttctcgcc cttgcttggg cggttgccgc ctttttttgt
     3301 atccgcacag tatctcgtga agtctagcag gcgcagcacc gccgggcttc agtaacttgt
     3361 accaaggcag ggggaggacg tccagaaaga tttgtaaaga cggctttatc gtctttataa
     3421 atctttttgg ataccccttg ccgccccgcc aaaagaacac attctgccgc aagggcaggt
     3481 ggtaaggcgc gcgccttttg cgccgttccc cctgcccccg cggcgtcgca agtgagactg
     3541 ggggtgcggg ggctagtccc cgcaaagcct ttcagcttcg gaagccacgg ccgaaaggca
     3601 ggcgcagcac tgccggtctg agcggaagcc aggctacagg caggcgcagc accgccgagc
     3661 taggcggaag ccaggctaca ggcaggcgaa gcaccgccgg ttgggcggaa gccacggccg
     3721 aaaggcaggg cgaagcaccg ccaggcttag gcggaagcca cggccgaaag gcaggcgaag
     3781 taccgccggt ctgggcggaa gccatggtaa aaggcaggcg aagcaccgcc gggcttcagt
     3841 aacctttgtt caggcagggg gaggatgtcc gtaaagaatc gtaaaggcgg ggttttttcg
     3901 cctttatgat tctttatgga taccccttgc cgctcggaca aagaaataca ctctgccgca
     3961 agggcaggtg gtaaggcgcg cgccttttgc gccgtccccc tgcccccgcg gcgtcgcaag
     4021 tgagactagg gggtgtgggg gactagtccc ccgcaaagcg ttcagcttcg gaaactttgg
     4081 ccgaaaggca ggcgaagcag cgcactttgc gacgaatgtc gcaaatagcc gagaagcgcg
     4141 gggggattgg cgataagcgc gaggggggtg tccccacagc gccgccgcgc cgcgaatgcg
     4201 gcgcaaaatc tttcagatta agaaacattt gtttaatgag gcaaccgtgc cttttaagaa
     4261 agggatagca aatgaaattg ttggccgcat tgattccgct tttgatgagc gtggcaggcc
     4321 gtatattgac tgcattaggc ttgatggcgg taacctattc aggggtggat agattggtag
     4381 cccattttca gcaggcgata accaatagca taacgggcgc gcctcaagcg atgttgcagc
     4441 ttttttatat aagcggcggt ggaaccgttc ttaatatcct gtttggtgcg atcgccttta
     4501 ttctgtcatt taaacaaatg acaaaactag caacctcaat cgggaagaaa aaataaatgg
     4561 cagagatctg tttgataaca ggcacgcctg gttcagggaa aacattaaaa atggtttcca
     4621 tgatggcagg cgatgaaatg tttaagcctg atgaaaacgg catacgccgt aaagtattta
     4681 cgaacatcaa aggcttgaag ataccgcaca cctacataga aacggacgcg aaaaagttgc
     4741 cgaaatcgac agatgagcag ctttcggcgc atgatatgta cgaatggata aagaagcccg
     4801 aaaatatcgg gtctattgtc attgtagatg aagctcaaga cgtatggccg gcacgctcgg
     4861 caggttcaaa aatccctgaa aatgtccaat ggctgaatac gcacagacat cagggtattg
     4921 atatatttgt tttgactcaa ggccctaagc ttctagatca aaatcttaga acgcttgtac
     4981 ggaaacatta ccacatcgct tcaaacaaga tgggtatgcg tacgctttta gaatggaaaa
     5041 tatgcgcgga cgatcccgta aaaatggcat caagcgcatt ctccagtatc tatacactgg
     5101 ataaaaaagt ttatgacttg tacgaatcag cggaagttca taccgtaaat aaggtcaagc
     5161 ggtcaaagtg gttttacact ctgccagtaa tagtattgct gattcccgtg tttgtcggcc
     5221 tgtcctataa aatgttgagc agttacggaa aaaaacagga agaacccgca gcacaagaat
     5281 cggcggcaac agaacagcag gcagtacttc cggataaaac agaaggcgag ccggtaaata
     5341 acggcaacct taccgcagat atgtttgtcc cgacattgac ggaaaaaccc gaaagcaagc
     5401 cgatttataa cggtgtaagg caggtaaaaa cctttgaata tatagcaggt tgtgtacaag
     5461 gcggaagaac cggatgcacc tgctattcgc atcaagggac agcattgaaa gaagtgacgg
     5521 agttgatgtg caaggactat gtaaaaaacg gcttgccgtt taacccatac aaagaagaaa
     5581 gccaagggca ggaagttcgg caaagcgcac agcaacattc ggacagggcg caagttgcca
     5641 cgttgggcgg aaagccgctg caaaatctta tgtatgataa ttggcaggag cgaggaaaac
     5701 cgtttgaagg aatcggcggg ggcgtggtcg gatcggcaaa ctgaagaaaa cggcaagaga
     5761 gaaaaaagac ccataaaccg tttgaatata gacggcttac gggtctttgt ttcgcgcaaa
     5821 gcaaaggcta aggcagtcag gcagcaaatc ccgcaatgta tcaaaacaga cgcgtagaaa
     5881 tgccggctgc ctttatccat cctcaaaatt gaatatcatc ctagccgtat caaggctgta
     5941 taaataagga aaataccaat gaatataatc gggctggaca tctcaaagga caccatagac
     6001 gcaacattgc ataaaacaaa cggaagtatc cattacatta aatttaagaa taatgatgat
     6061 ggattaaaac agtttagatt gtggataaag ggaaacagaa tcagaaaagc ctatatcggc
     6121 atggaggcaa caggcatcta ttacgaaaag gcagcagata tgctttcttc ctactatact
     6181 gtttacgtta ttaatccctt aaaaatcaag gactacggaa aaagcaggtt taaccgtacc
     6241 aaaaccgaca aagcagattc aaacctgata gcagactaca taaaaaggca tcaagataca
     6301 ttgataccgt atcagatacc caaaaacaaa gcactgcaaa aactgattaa ccttaaaaat
     6361 caattacatc aacatcagaa gcaaattaaa aaccgtcttc atagcactga agaagacttc
     6421 ataaggaaca tacatcaaga cttgatagat accatacagg acaagatgga acaggtaaaa
     6481 atagccatat ccgaacaaat caaaaaacaa acggacaata accattaccg caatcttcaa
     6541 accatcccga gcataggcaa agacaccgca tcagttcttt atgcgcaact gacagaaaaa
     6601 cattttaaaa ccgcaaacca gtttgtatcc tatgccggat taagtcccgc catcatacaa
     6661 tcagggacaa gcgtaagagg tcggggcaga ttgagccgat acggaaacag acgattaaaa
     6721 agtacgctgt atatgcccgc cctttgtgct taccgtttta acgcatttcc gaaattaata
     6781 aataatctga aaaaagcggg taagccaaag atggtaatca tcgttgccat catgcgcaaa
     6841 ctggcgaagc tcgcctatta cattgttaaa accggccagc cttacgatgc ggaaagacac
     6901 cgattgaatc aataaaattc aacaaaatta aacggttacg cgaatatatt tgtgtaaccg
     6961 tgcatttgca tatcgtaaat aaacgtaaat aaaaataaca atataaatca gtatattgca
     7021 actttgtttt ttattttgtg ttgacgggca acatatcatc tgcgcgggaa tgacgaatcc
     7081 atccatacgg aaacctgcac cacgtcattc ccacgaaagt gggaatctag gacg
//
LOCUS       DAXHPV010000106         7118 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.106, whole genome shotgun sequence.
ACCESSION   DAXHPV010000106 DAXHPV010000000
VERSION     DAXHPV010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7118)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7118)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7118
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.106"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(16..771)
                     /locus_tag="ACFM6C_001496"
     CDS             complement(16..771)
                     /locus_tag="ACFM6C_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formylglycine-generating enzyme family protein"
                     /protein_id="HFC6158938.1"
                     /translation="MKYVRLLFLCAALAGTQAAAAEMVQIEGGSYRPLYLKKDTGLIK
                     VKPFKLDKYPVTNAEFAEFVNSHPQWQKGRIGSKQAEPAYLKHWMKNGSRSYAPKAGE
                     LKQPVTNVSWFAANAYCAAQGKRLPTIDEWEFAGLASATQKNGSNEPGYNRTILDWYA
                     DGGRKGLHDVGKGRPNYWGVYDMHGLIWEWTEDFNSSLLSSGNANAQMFCSGASIGSS
                     DSSNYAAFLRYGIRTSLQSKYVLHNLGFRCTSR"
     gene            complement(896..2041)
                     /gene="nirK"
                     /locus_tag="ACFM6C_001497"
     CDS             complement(896..2041)
                     /gene="nirK"
                     /locus_tag="ACFM6C_001497"
                     /EC_number="1.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0050421 - nitrite reductase (NO-forming)
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper-containing nitrite reductase"
                     /protein_id="HFC6158939.1"
                     /translation="MKRQALAAMIASLFALAACGGEPAAQAPAASAEAASSAAQAAAE
                     TPAGELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGD
                     VPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFK
                     ALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGA
                     QGLQPFDMDKAVAEQPEYVVFNGHVGSIAGDNALKAKAGETVRMYVGNGGPNLVSSFH
                     VIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGSYTLVDHSIFRAFNKG
                     ALGQLKVEGAENPEIMTQKLSDTAYAGNGAAPAASAPAASAPAKSDY"
     gene            2412..4667
                     /locus_tag="ACFM6C_001498"
     CDS             2412..4667
                     /locus_tag="ACFM6C_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric-oxide reductase large subunit"
                     /protein_id="HFC6158940.1"
                     /translation="MGQYKKLWYLLFAVLAVCFTILGYMGSEVYKKAPPYPEQVVSAS
                     GKVLMTKDDILAGQSAWQSTGGMEVGSILGHGAYQAPDWTADWLHRELSAWLDLTAQQ
                     TYGKKFDEVSPEEQAVLKTRLADEYRNQSRIKEDGSVVISDTRVKAIESILPYYHGVY
                     GDDPALQTTREHFAMKNNTLPSQEAREKLFDFFFWTSWSASTNRPDETFTYTNNWPHE
                     PLINNVPTTENYMWSFTSVVLLLMGIGLLMWGYSFLTKHEEVEVPSEDPISKIQLTPS
                     QKALGKYVFLTVALFVVQVLLGGLTAHYTVEGQGFYGIDEALGFEMSDWFPYALTRTW
                     HIQSAIFWIATGFLTAGLFLAPIVNGGKDPKFQRAGVNFLYIALFIVVGGSYAGNFFA
                     LTHILPPEFNFWFGHQGYEYLDLGRFWQLLLMVGLLLWLFLMLRCTVSAFKEKGVDKN
                     LLAIFVASMVGVGVFYAPGLFYGEKSPIAVMEYWRWWVVHLWVEGFFEVFATAAFAFV
                     FYNMGFVRRSTATASTLAAAAIFMLGGVPGTLHHLYFSGSTSASMAIGACFSALEVVP
                     LVLLGREAYEHWSYQHLSDWAKRLRWPLMCFVAVAFWNMIGAGVFGFLINPPISLFYI
                     QGLNTSAVHAHAALFGVYGFLALGFVLLVARYLKPNAQFDDKLMTWGFWLLNGGLVGM
                     IAISLLPVGVIQAYASITHGLWYARSEEFLQMEILDTLRWVRTAADLVFIGGAICVAI
                     QATKIVFGRDK"
     gene            4846..5379
                     /locus_tag="ACFM6C_001499"
     CDS             4846..5379
                     /locus_tag="ACFM6C_001499"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004602 - glutathione peroxidase activity
                     [Evidence IEA];
                     GO_function: GO:0043295 - glutathione binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HFC6158941.1"
                     /translation="MGIYDFQMKDAEGNAVDLSGYRGKVLLIVNTATRCGLTPQYEAL
                     QKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANT
                     APLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNRDGEVVERF
                     APSVTPEEIEADIRALL"
     gene            complement(5442..6629)
                     /locus_tag="ACFM6C_001500"
     CDS             complement(5442..6629)
                     /locus_tag="ACFM6C_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HFC6158942.1"
                     /translation="MTEPTSRRRFLKTCTAAAGAGLLQACGTAPASNNAPSAPSHPVA
                     KARTVYPKPPRHSNSADNLLRIVASSGFAEDTNRVNTALTRLYNAGFTVTNQQAGSRR
                     FQRFAGTDAQRAADFQEVASGRVATPKVLMGLRGGYGAARILPHIDFASLGARMREHG
                     TLFFGFSDVCAVQLALLAKGNMMSFAGPMAYSDFGKPAPGAFTMDAFIKGATQNRLTV
                     DVPYIQRADVETEGILWGGNLSVLASLAGTPYMPDIDGGILFLEDVGEQPYRIERMLN
                     TLYLSGILKKQRAIVFGNFRMEKIRDVYDPSYDFSAVANHVSRTAKIPVLTGFPFGHI
                     ADKITFPLGAHARIRMNGNSGYSVAFEGYPTLDASALTLDTLLPPPDLPIFPESGVAD
                     ISE"
     gene            complement(6669..7073)
                     /locus_tag="ACFM6C_001501"
     CDS             complement(6669..7073)
                     /locus_tag="ACFM6C_001501"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HFC6158943.1"
                     /translation="MTAQPCPICTAQNEDVLLQTPKLRVIAVHNDSGSPAFCRVIWHE
                     HIAEMTDLSAAERGELMEMVYKVEAAMRQVFRPAKINLASLGNVVPHLHWHIIARFEN
                     DASFPAPIWANPVRKHGMTLPQDWTEQLKKLL"
BASE COUNT         1589 a         1726 c         1986 g         1817 t
ORIGIN      
        1 ctataattga aggggttatc ggcttgtgca acggaagccc aagttgtgca agacatattt
       61 ggattgcagg ctggtacgga tgccgtagcg gaggaaggcg gcatagttgg acgagtcgct
      121 cgacccgata gacgcgccgc tgcaaaacat ttgcgcgttg gcattgccgg aagaaagcag
      181 gctgctgttg aaatcttccg tccattccca aatcagcccg tgcatatcat aaacgcccca
      241 gtagttcggg cggcctttgc cgacatcgtg caggcctttc cgtccgccgt cggcatacca
      301 atcgagaata gtgcggttgt agccgggttc gtttgagccg tttttctgcg tggcggaagc
      361 aagtccggca aattcccatt cgtcaatggt cggcaggcgt ttgccttgtg cggcgcaata
      421 ggcgttggcg gcaaaccagg aaacattggt taccggttgt tttaattcgc ccgccttcgg
      481 cgcatagctg cggctgccgt ttttcatcca atgcttcagg taagcgggtt ctgcctgttt
      541 ggaaccgatc ctgccttttt gccattgggg gtggctgttg acaaattcgg caaactcggc
      601 attggtaacg ggatatttat ccagtttgaa cggtttgact ttaatcaggc cggtatcttt
      661 tttcagataa agcgggcggt agctgccgcc ttcgatttga accatttcgg cagccgccgc
      721 ttgagtgccg gcgagtgccg cacagagaaa gagtaaccgg acatacttca taaagcctcc
      781 tgacaggcgg ttaaaatcaa tcttccgaaa ggaaagattg gttgttaaaa aaccactgcc
      841 gtgcgtaatg aagtacggcg gcagtggttc gtttgcctaa aaatgggtgt tcaatttagt
      901 aatcgctttt tgcaggagca gaagctgcgg gagcggaagc agcaggagct gcaccgttac
      961 cggcgtaagc ggtatcactc aatttttgag tcatgatttc agggttttct gcaccttcta
     1021 ctttcaattg acccagtgcg cctttgttga atgcgcggaa gatagagtgg tcaaccaaag
     1081 tgtagctgcc cgggatgtcg actttgaatt cgacgatggc agagccgccg gcaggaacga
     1141 tggtactttg tacgttttcg ttaatcagtt tgccgccttc aacataaact ttgtcgaaga
     1201 tttcaccgat tacgtggaag gaagacacca agttcgggcc gccgttaccg acgtacatac
     1261 gcacggtttc gcctgctttg gctttcagcg cgttatcgcc ggcgatagaa cctacatgac
     1321 cgttgaatac gacgtattca ggctgttcgg caacggcttt gtccatatcg aacggttgca
     1381 gaccttgcgc gccttttttg cctttggtgt agaagtcgcc ttggacgatg tagaactctt
     1441 tatccacttt cggcagacct tctttaggct cgaccaaaat cagaccgtac ataccgttgg
     1501 cgatgtgcat accgaccggc gcgacggcgc agtggtagat gtacaggcca ggttgcaggg
     1561 ctttgaagct gaatgtggaa gtacggcccg gagcggtaaa ggttgcggcc gcgccgccac
     1621 cttggccggt agctgcatgg aagtcaacgt tatggggaac ggtagaagaa ggattgttag
     1681 agaattctac ttctacggta tcaccttcgc gtacgcgaat catacggccc ggaacgtcgc
     1741 cgtcaaatgt ccagtagcgg tattccaccc cgtcgtccat tttcatggtt ttttcgacgg
     1801 tttccatttt tacgcgtact ttggcaggat agtcgcggtc gattgcggga ggtacttcag
     1861 gagcgtgggt ggtaactgca tcgatgacgg gcagttcgcc tgcaggcgtt tcggcggcag
     1921 cttgtgcggc ggaacttgcg gcttctgcgg aagcggcagg ggcttgcgcg gcaggttcgc
     1981 cgccgcaggc ggctaatgcg aataaggaag caatcattgc agctaaggct tggcgtttca
     2041 taatgttttc cttttgtaag aaaagtagag gaattggtta agaacttggt gtgattatgc
     2101 gtttgcccca ttgggggcat tttgatttaa gtcaaataat tcataaaata tgaacttaaa
     2161 atgatacttc taatacttta tagctactaa aaattacaat aaataggctg atttgcttaa
     2221 gggcttcggc aaatcaggca aaggcagggt agttgccgac taaagaataa tgatagttat
     2281 tatcatatat gtatttgttt tatatgtgag tttctttgaa caaatgttta tttgcgcggt
     2341 aaaccgtgct acaatcttta acattcatat tttgtgaatt ttaatccact atattaaaag
     2401 gagctctcaa aatgggacag tacaagaagc tgtggtactt gctgtttgcc gttctggcgg
     2461 tatgctttac cattcttggc tatatgggca gcgaggttta taagaaagcc ccgccttacc
     2521 ccgaacaggt cgtttccgca tcaggcaaag tgctgatgac gaaagacgat attttggcag
     2581 gtcagtctgc gtggcagagt accggcggta tggaagtcgg ttcgattctg ggtcacggcg
     2641 catatcaggc tccggactgg acggcggact ggctgcatcg tgagttgtcc gcttggttgg
     2701 atttgaccgc gcaacagact tacggcaaaa aattcgatga agtttcccct gaagaacaag
     2761 ccgttctgaa aacccgactg gctgacgaat accgcaacca aagccgtatt aaagaagacg
     2821 gcagcgtcgt catcagcgat acgcgcgtga aagccatcga aagcatcctg ccttattacc
     2881 acggtgttta cggcgatgat cccgcgctgc aaaccacccg cgaacacttt gcaatgaaaa
     2941 acaacacatt gccaagccaa gaagcgcgtg aaaaactgtt cgacttcttc ttctggactt
     3001 cttggtctgc ttcgaccaac cgtcctgacg agacgttcac ttataccaac aactggccgc
     3061 acgagccttt gatcaacaac gtaccgacca ctgaaaacta tatgtggtca ttcaccagcg
     3121 ttgttcttct gctgatgggc atcggtttgc tgatgtgggg ttattccttc ttgaccaaac
     3181 acgaggaagt ggaagtgccg tctgaagacc cgatttccaa aatccaactg accccttcgc
     3241 aaaaagcatt gggcaaatac gtcttcctga cggtcgccct gtttgtggta caagtattgc
     3301 tgggcggact gaccgcgcac tacaccgtcg aaggccaggg tttctacggc atcgacgaag
     3361 cgttgggctt tgaaatgtcc gactggttcc cttatgccct gacccgtact tggcacatcc
     3421 aatcagccat cttctggatt gcaaccggct ttttgacggc aggtttgttc ctcgcgccga
     3481 ttgtcaacgg cggtaaagat cccaagttcc aacgtgccgg cgtaaacttc ctctatatcg
     3541 ccctcttcat cgtggtcggc ggttcttacg cgggcaactt cttcgcgttg acgcacatcc
     3601 ttcccccgga atttaacttc tggttcggac accaaggtta cgaatacctc gatttgggac
     3661 gtttctggca actcctgctg atggtcggcc tgctgttgtg gctgttcctg atgttgcgtt
     3721 gcacggtttc cgccttcaaa gaaaaaggcg tggacaaaaa cctgctggca atctttgtcg
     3781 cttctatggt cggtgtgggc gtattctacg caccgggact gttctatggc gagaaatccc
     3841 cgattgccgt aatggaatac tggcgttggt gggtggttca cctgtgggtg gaaggcttct
     3901 ttgaagtatt tgccactgcc gccttcgcat ttgtcttcta caatatgggc tttgtccgcc
     3961 gcagtaccgc cacagcttct actctggccg ctgccgccat ctttatgttg ggcggcgttc
     4021 cgggtacgct gcaccacctg tacttctccg gctctacctc cgcctctatg gcaatcggtg
     4081 cctgcttctc cgctttggaa gtcgtgccgc tggtgttgct gggccgtgaa gcatacgagc
     4141 attggtctta ccaacacctg tccgactggg cgaaacgcct gcgttggccg ctgatgtgct
     4201 tcgtggcagt cgccttttgg aatatgatcg gtgccggtgt attcggtttc ctgattaacc
     4261 cgccgatttc cctgttctat atccaaggtt tgaatacttc tgctgttcat gcgcacgccg
     4321 ccttgttcgg tgtgtacggt ttcttggcat tgggcttcgt attgctggtt gcccgttatt
     4381 tgaaaccgaa cgcgcagttt gacgacaaac tgatgacttg gggcttctgg ctgctcaacg
     4441 gcggcttggt cggtatgatt gccatcagcc tgttgccggt tggcgtgatt caggcatacg
     4501 cctccatcac gcacggcctg tggtatgcac gcagcgaaga gttcctgcaa atggaaatcc
     4561 tcgacacctt gcgttgggta cgtacggcag ctgacttggt ctttatcggc ggtgcaatct
     4621 gcgttgccat ccaagccact aaaatcgtat tcggccgcga caaataagtt ttgcggtatg
     4681 aaatgagcaa ctgcacccgt tttcgggtgc agttttttat tgcggattgg gacgggaatg
     4741 gaaaaggatg tggatttttt attttaatcg gctatacaat tgctgctttc atgccgtctg
     4801 aagcacgttt cagatggcat cggtttacat cagataagga taaaaatggg tatttacgat
     4861 tttcaaatga aagatgcgga aggcaatgcg gttgatttgt caggctatcg cggcaaggtt
     4921 ctgctgattg tcaacacggc aacgcgttgc ggtctgaccc cgcaatacga ggctttgcag
     4981 aagctgtatg cacaatatac cgcagaaggc ttggagattt tggattttcc gtgcaaccag
     5041 ttccgcgaac aggctcccga aagcagcgga gaaattgccc aagtgtgtat gatgaagttt
     5101 ggcacgaagt ttaagatttt cgacaaaatc gaagtcaatg gagcaaatac cgcgcccttg
     5161 tatgcctacc tgaaatccgt caaaccgcaa gataaaggca atcatctgtt taaagatttc
     5221 gtgttgaagc tcgcagcttt gggagagaag cgcgacgaag gcgacatcaa atggaacttt
     5281 accaaattcc tcgtcaaccg cgacggcgaa gtggtcgagc gttttgcgcc tagtgttacg
     5341 cccgaagaaa tcgaagccga tattcgggca ttgctgtaat ctgccgccgt cttgggaaat
     5401 gccgtctgaa ggcttcagac ggcatttgtc cgtttgcggg tttattccga aatatcggca
     5461 acaccgcttt cggggaagat gggcaaatcc ggcggtggga gcagggtatc caaagtcagg
     5521 gcggacgcat cgagtgtcgg gtagccttca aacgcgaccg aataaccgct gtttccgttc
     5581 atacggattc gggcgtgcgc gcctagaggg aaagtgattt tgtcggcaat gtgtccgaac
     5641 gggaagcccg tcagcacggg gattttcgcc gtgcgcgaaa catggttggc aacggcagaa
     5701 aaatcataag acggatcata gacatctcga attttttcca tacggaaatt gccgaacacg
     5761 atggcgcgct gtttcttcaa aatacccgaa agatacagcg tattgagcat acgttcgatg
     5821 cggtagggct gttcgccgac atcttcgagg aacaaaatgc cgccgtcgat gtcgggcata
     5881 taaggcgtgc cggcgagcga ggcgaggacg cttaagttgc cgccccacaa tatgccttcg
     5941 gtttcgacat cggcgcgttg gatataagga acatcaacgg tcaggcggtt ttgggttgca
     6001 cccttgataa aggcatccat cgtaaacgca ccgggggcgg gtttgccaaa atcgctataa
     6061 gccatcgggc cggcaaaact catcatattg ccttttgcca acaatgccag ctggacggcg
     6121 catacgtcgc tgaatccgaa aaacagcgtg ccgtgttcgc gcatccttgc gccgagcgaa
     6181 gcaaaatcga tatgcggcag aatccgcgcc gcaccgtaac cgccgcgcaa gcccatcagc
     6241 actttaggcg tggcgacgcg gccggaagcg acctcttgga aatcggcggc acgttgtgcg
     6301 tccgtaccgg caaaccgttg gaaacggcgg ctgcccgcct gttggttggt tacggtaaaa
     6361 ccggcattgt aaaggcgggt taaggctgtg ttgacgcggt tggtgtcttc ggcaaatcct
     6421 gacgaagcga caatacgcag aagattgtcg gcagagttgg aatggcgtgg tggtttgggg
     6481 tacacggttc gggctttcgc aacaggatga gagggcgcgg atggggcatt gtttgaagca
     6541 ggcgcagtac cgcaagcctg aagcagcccc gcgccggcgg cggcggtgca ggttttcagg
     6601 aaacggcggc gggaggtcgg ttcggtcata atttcccttt catacggttt cagacggcat
     6661 cggcgggctt aaagcagctt tttaagctgt tccgtccaat cttgcggcag ggtcataccg
     6721 tgtttccgga cggggtttgc ccaaatcggc gcggggaaag acgcatcgtt ttcaaagcgg
     6781 gcgataatat gccaatgcag gtgcggcacg acattgccca agctggcgag gttgattttt
     6841 gccggccgga acacttggcg catagcggct tcgactttgt acaccatttc catcaattcg
     6901 ccgcgttccg ctgccgaaag gtcggtcatt tcggcgatgt gttcatgcca gataacacgg
     6961 cagaatgcag gcgaaccgct gtcgttatgg acggcgatga cgcgcagctt gggggtttgc
     7021 agcaaaacgt cttcattttg cgccgtgcag atggggcagg gttgggcggt catttttcct
     7081 tattcctgaa agtgtttaaa aaacggtagg ataatttc
//
LOCUS       DAXHPV010000107         7089 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.107, whole genome shotgun sequence.
ACCESSION   DAXHPV010000107 DAXHPV010000000
VERSION     DAXHPV010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7089
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.107"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            152..781
                     /locus_tag="ACFM6C_001502"
     CDS             152..781
                     /locus_tag="ACFM6C_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CadD family cadmium resistance transporter"
                     /protein_id="HFC6158944.1"
                     /translation="MIQNVVTSIILYSGTAVDLLIILMLFFAKRKSRKDIINIYLGQF
                     LGSVSLILLSLLFAFVLDYIPSKEILGLLGLIPIFLGIKVLLLGDSDGEAIAKEGLRK
                     DNKNLIFLVAMITFASCGADNIGVFVPYFTTLNLANLIVALLTFLVMIYLLVFSAQKL
                     AQVPSVGETLEKYSRWFVAVVYLGLGIYILIENNSFDILWTVSGQEKIL"
     gene            937..2613
                     /locus_tag="ACFM6C_001503"
     CDS             937..2613
                     /locus_tag="ACFM6C_001503"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArnT family glycosyltransferase"
                     /protein_id="HFC6158945.1"
                     /translation="MLTYTPPDARPPAKTHEKPWLLMLMAFAWLWPGVFSRDLWNPAE
                     PAVYTAVEALAGSPTPLVAHLFGQTDFGIPPVYLWVAAAFKHLLSPWAADSYDAARFA
                     GVFFAVVGLTSCGFAGFNFLGRHHGRSVVLILIGCIGLIPVAHFLNPTAAAFAAAGLV
                     LHGYSLARRRVIAASFLLGTGWTLMSLAAAYPAAFALMLPLPVLMFFRPWQSRRLMLT
                     AVASLAFALPLMTVYPLLLAKTQPTLFAQWLDYHVFGTFGGVRHVQTAFSLFYYLKNL
                     LWFALPALPLAVWTVCRTRLFSTDWGILGVVWMLAVLVLLAVNPQRFQDNLVWLLPPL
                     ALFGAAQLDSLRRGAAAFVNWFGIMAFGLFAVFLWTGFFAMNYGWPAKLAERAAYFSP
                     YYVPDIDPIPMAVAVLFTPLWLWAITRKNIRGRQAVTNWAAGVTLTWALLMTLFLPWL
                     DAAKSHAPVVRSMEASLSPELKRELSDGIECIDIGGGDLHTRIVWTQYGTLPHRVGDV
                     QCRYRIVRLPQNADASQGWQTVWQGARPRNKDSKFALIRKIGENILKTTD"
     gene            2715..3320
                     /locus_tag="ACFM6C_001504"
     CDS             2715..3320
                     /locus_tag="ACFM6C_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HFC6158946.1"
                     /translation="MMTLYSGITCPFSHRCRFVLYEKGMDFEIKDVDIYNKPEDLAVM
                     NPYNQVPVLVERDLVLHESNIINEYIDERFPHPQLMPGDPVMRGRGRLVLYRMEKELF
                     NHVQVLENPAATNKEQAKAREAIGNGLTMLAPSFSKSKYILGEDFSMIDVALAPLLWR
                     LGHYDVKLGKSAAPLLKYAERIFQREAFIDALTPAEKAMRK"
     gene            3389..3781
                     /locus_tag="ACFM6C_001505"
     CDS             3389..3781
                     /locus_tag="ACFM6C_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HFC6158947.1"
                     /translation="MTTSTKPYILRALCEWCSDNAFTPHILVWVNEHTRVPMQYVRDN
                     EIMLNIGATATQNLQIDNDWISFSARFGGKAHDIWIPVGHVLSLFARETGEGMGFELE
                     KYRPDTPPENTSAETAPRPAKKGLKLVK"
     gene            complement(3810..3959)
                     /locus_tag="ACFM6C_001506"
     CDS             complement(3810..3959)
                     /locus_tag="ACFM6C_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158948.1"
                     /translation="MPSEPHIAGSDGIFNVPISNRQGQHGFDTPKRVLPINGFRLRPI
                     GQNAV"
     gene            complement(3980..4426)
                     /locus_tag="ACFM6C_001507"
     CDS             complement(3980..4426)
                     /locus_tag="ACFM6C_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010356294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HFC6158949.1"
                     /translation="MSLKIRLTEDMKTAMRAKDQVSLGTIRLINAAVKQFEVDERTEA
                     DDAKITAILTKMVKQRKDSAKIYTDAGRQDLADKENAEIEVLHRYLPQMLSAGEIRTE
                     VDAAVTETGAAGMADMGKVMGVLKTRLAGKADMGEVNKILKAVLTA"
     gene            complement(4558..4770)
                     /gene="rpsU"
                     /locus_tag="ACFM6C_001508"
     CDS             complement(4558..4770)
                     /gene="rpsU"
                     /locus_tag="ACFM6C_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011484193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HFC6158950.1"
                     /translation="MPAIRVKENEPFEVAMRRFKRAVEKTGLLTELRAREAYEKPTTE
                     RKRKKAAAVKRLQKRLRSQQLPPKMY"
     gene            complement(5059..6909)
                     /gene="ltgA"
                     /locus_tag="ACFM6C_001509"
     CDS             complement(5059..6909)
                     /gene="ltgA"
                     /locus_tag="ACFM6C_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase LtgA"
                     /protein_id="HFC6158951.1"
                     /translation="MYLPSMKHSLPLLAALVLAACSSTNTLPADKTPADNIETADLSA
                     SVPTRPAEPEGKTLADYGGYPSALDAVKQKNDAAVAAYLENAGDSAMAENVRNEWLKS
                     LGARKQWTLFAQEYAKLEPAGRAQEVECYADSSRNDYTRAAELVKNTGKLPSGCTKLL
                     EQAAASGLLDGNDAWRRVRGLLAGRQTTDARNLAAALGSPFDGGTQGSREYALLNVIG
                     KEARKSPNAAALLSEMESGLSLEQSSFAWGVLGHYQSQSLNVPAALDYYGKVADRRQL
                     TDDQIEWYARAALRARRWDELASVISHMPEKLQKSPTWLYWLARSRAATGNTQEAEKL
                     YKQAAATGRNFYAVLAGEELGRKIDTRNNVPDAGKNSVLRMAEDGAIKRALVLFRNSR
                     TAGDAKMRRQAQAEWRFATRGFDEDKLLTAAQTAFDHGFYDMAVNSAERTDRKLNYTL
                     RYISPFKDTVIRHAQNVNVDPAWVYGLIRQESRFVMGAQSRVGAQGLMQVMPATAREI
                     AGKIGMDAAQLYTADGNIRMGTWYMADTKRRLQNNEVLATAGYNAGPGRARRWQADTP
                     LEGAVYAETIPFSETRDYVKKVMTNAAYYAALFGAPHIPLKQRMGIVPAR"
BASE COUNT         1400 a         1879 c         1931 g         1879 t
ORIGIN      
        1 agcaccttag agaatcgttc tctttgagct aaggcgaggc aacgccgtac tggtttttgt
       61 taatccacta tattttgatg gggttgaagt tgacatctac aaagtttaat gtttgaatac
      121 attaaaaaaa tatatttgaa tgagatgttt tatgattcaa aatgtcgtta cttcaataat
      181 cctgtattct gggacagccg tagacttact tattatccta atgttatttt ttgccaaaag
      241 aaaaagtaga aaagacatca ttaacatcta tttaggacaa tttctaggct ctgttagcct
      301 gatattgcta agtttgcttt ttgcatttgt cttagattat attcctagta aagagatttt
      361 aggtttgctc ggcttgattc caattttcct aggcatcaaa gttttgctgt taggagattc
      421 tgatggagag gctattgcca aagagggttt gcgcaaagat aataaaaacc tgatttttct
      481 agtcgctatg attacttttg caagttgtgg tgctgacaat attggtgtct ttgtcccata
      541 ttttactacc ttaaatttag caaatttgat agtggcttta cttacctttc tagtcatgat
      601 ttatctcttg gttttttctg cccaaaaatt ggcacaagtc ccttctgttg gagaaacttt
      661 ggaaaaatat agcagatggt ttgttgccgt tgtttattta ggattgggga tatatatcct
      721 gattgaaaac aacagttttg atatactatg gactgtgtcg ggccaggaaa aaatattatg
      781 aaaaagatag tatctgcaaa gactgccatg tgcagtcttt tttgttgccg gtctttttgt
      841 gtctgatgct gtcggatttt atctgatgcc gtctctgcac gacctttgtg cgaatatttg
      901 ctacacttgg caatccgtcc attttttctc acgcttatgc tgacctacac tccgcccgat
      961 gcccgcccgc ccgccaaaac ccacgaaaaa ccgtggctgc tgatgctgat ggcgtttgcc
     1021 tggttgtggc ccggcgtgtt ttcccgtgat ttgtggaatc ctgccgaacc tgccgtctat
     1081 accgccgtcg aagcactggc aggcagcccc acccccttgg ttgcccatct gttcggtcaa
     1141 accgatttcg gcataccgcc cgtgtatctt tgggttgccg ccgcgttcaa acatttgctg
     1201 tcgccgtggg ctgccgactc atacgatgcc gcacgctttg caggcgtgtt tttcgccgtt
     1261 gtcggactga cttcctgcgg ctttgccggt ttcaactttt tgggcagaca ccacgggcgc
     1321 agcgtcgtcc tgattctcat cggctgtatc gggctgattc cagttgccca tttcctcaac
     1381 cccactgccg ccgcctttgc cgccgccgga ctggtgctgc acggttattc tttggctcgc
     1441 cggcgcgtga ttgccgcctc tttcctgctc ggtacgggtt ggacgctgat gtcgttggca
     1501 gcagcttatc cggcagcatt tgcgctgatg ctgcccttgc ccgtgctgat gtttttccgt
     1561 ccgtggcaaa gcaggcgttt gatgttgacg gcagtcgcct cgcttgcctt tgccctgccg
     1621 cttatgaccg tttacccact gctcttggca aaaacgcagc ccacgctgtt cgcgcaatgg
     1681 ctcgactatc acgttttcgg tacattcggc ggcgtgcggc acgttcagac ggcattcagt
     1741 ttgttttact atctgaaaaa cctgctttgg tttgcattgc ccgcgctgcc gctggcggtt
     1801 tggacggtat gccgcacgcg cctgttttcg accgactggg ggattttggg cgtcgtctgg
     1861 atgcttgccg ttttggtgct gcttgccgtc aatccgcagc gttttcagga taacctcgtc
     1921 tggctgcttc cgccgcttgc cctgttcggc gcggcgcaac tggacagcct gaggcgcggc
     1981 gcggcggcgt ttgtcaactg gttcggcatt atggcgttcg gactgtttgc cgtgttcctg
     2041 tggacgggct ttttcgccat gaattacggc tggcccgcca agcttgccga acgcgccgcc
     2101 tatttcagcc cgtattacgt tcccgacatc gatcccattc cgatggcggt tgccgtactg
     2161 ttcacaccct tgtggctgtg ggcgattacc cggaaaaaca tacgcggcag gcaggcggtt
     2221 accaactggg cggcaggcgt taccctgacc tgggctttgc tgatgacgct gttcctgccg
     2281 tggctggacg cggcgaaaag ccatgcgccg gtcgtccgga gtatggaggc atcgctttcc
     2341 ccggaattga aacgggagct ttcagacggc atcgagtgta tcgacatagg cggcggcgac
     2401 ctgcacacgc ggattgtttg gacgcagtac ggcacattgc cgcaccgcgt cggcgatgta
     2461 caatgccgct accgtatcgt ccgcttgccc caaaatgcgg atgcgtcgca aggctggcag
     2521 acggtctggc agggtgcgcg cccgcgcaac aaagacagta agttcgcact gatacggaaa
     2581 atcggggaaa atatattaaa aacaacagat tgagccgaat ttctggatta agtgccggaa
     2641 atcgcgtata attgcgcgat taaaccttta taaatcagcc gttttgcagg catcacacag
     2701 gagcgacaat tattatgatg accctctatt ccggcattac ctgccccttc agccaccgct
     2761 gccgcttcgt tttgtacgaa aaaggtatgg attttgaaat caaagacgtc gatatttaca
     2821 acaaacccga agacctcgcc gtcatgaatc cgtataacca agttcccgtg ctggtcgagc
     2881 gcgatttggt gctgcacgag tccaacatca tcaacgaata catcgacgaa cgcttccctc
     2941 atccgcagct tatgcccggc gatcccgtta tgcgcggccg gggccgactg gtgctgtacc
     3001 gtatggaaaa agaattgttc aaccacgtcc aagtgttaga aaaccccgcc gccaccaaca
     3061 aggaacaggc aaaagcgcgc gaagccatcg gcaacggtct gaccatgctt gccccttcgt
     3121 tcagcaaaag caaatacatc ctcggcgaag atttttctat gattgatgtc gcccttgctc
     3181 cgctgctgtg gcggctcggc cactacgatg tcaaactggg caaaagtgcc gcgccgctgc
     3241 tcaaatacgc cgagcgcatc ttccagcgcg aagcctttat cgacgcgctg acacctgcgg
     3301 aaaaggcgat gcgcaaataa gtttgaaatg cctgtaaaac ctgacggttt caggcatttc
     3361 tatattcagg cacattatgg ggagcattat gactacttcc accaaaccct acattctccg
     3421 cgccctctgc gaatggtgca gcgacaacgc ctttacccct cacatccttg tctgggtcaa
     3481 cgaacacacg cgcgtcccca tgcagtacgt ccgcgacaac gaaattatgc tcaacatcgg
     3541 cgcgaccgcc acgcaaaacc ttcaaatcga caatgattgg atcagttttt ccgcccgttt
     3601 cggcggaaag gcacacgaca tatggatacc tgtcggacac gtcctcagcc ttttcgcacg
     3661 ggagaccggc gaaggtatgg ggtttgaatt ggagaagtac cgacccgata cgccgcctga
     3721 aaacacctct gccgaaaccg cgccccggcc cgccaaaaaa ggcttgaaat tggtcaaata
     3781 aatctatgcc gtctgaacgg aatcgtgttt cagacggcat tttgtccgat ggggcgcaaa
     3841 cggaatccgt ttatcggcaa aacccgtttc ggtgtatcga aaccgtgttg cccctgccga
     3901 ttcgatattg ggacattgaa aatgccgtct gaacctgcga tatggggttc agacggcatt
     3961 tttccttata ttcatacaat caggcggtca gtacggcttt cagaattttg ttgacttcgc
     4021 ccatatcggc tttgccggcg aggcgggttt tcaatacgcc catcactttg cccatatccg
     4081 ccatacctgc cgcgccggtt tcggtaacgg cggcatcgac ctcggtacgg atttcgccgg
     4141 cggaaagcat ttggggaagg tagcggtgca gtacctcgat ttcggcgttt tctttgtctg
     4201 ccaagtcctg ccgccccgcg tcagtataga ttttcgcgct gtctttgcgc tgtttgacca
     4261 ttttggtcag gatggcggtg attttggcat cgtcggcttc ggtgcgttcg tccacttcaa
     4321 actgtttgac ggcggcgttg ataaggcgga tggtgccgag ggaaacttgg tctttggcgc
     4381 gcatagccgt tttcatgtct tcggtaaggc ggattttcag gctcataatg ttctcgctgg
     4441 gatgtcggat ggaaacggcg ggtttcgatg ccgtctgaaa agcaaaacac accgcagagc
     4501 aggtcttgcg gtgtgtcctc atatcacagg gctgacctgt aatctatact tgaatgttta
     4561 gtacattttg ggcggcagtt gttggctgcg caggcgtttt tgcaggcgtt ttacggctgc
     4621 cgcttttttg cgtttgcgtt cggtagtcgg tttttcgtag gcttcgcggg cgcgcagctc
     4681 ggtcagcagg ccggtttttt ctacggcgcg tttgaaacgg cgcatagcga cttcaaatgg
     4741 ttcattctct tttacgcgga ttgcaggcat tttatttcct ttaataaatt cggttgtttc
     4801 atctgcccat catatcggtg gaaagggtag ggcagacggt gttgtaggtt ttccgtatcg
     4861 ctgtgccttt cggcggcggg atacgcgccg tgacggaaac atcacctcct aacgggtcgg
     4921 cttgtgccgt gtcaagctgc ttgaaaaagc aggaaaaaca attttcggat tgtcttatat
     4981 ttatggttcg ccgtcaatgc cgttcgggat aaaaatgccg tctgaaaggc cgggcgagct
     5041 tcagacggca tcggtacgtc agcgggcggg aacaatgccc atacgctgtt tgagcgggat
     5101 gtgcggcgcg ccgaagaggg cggcgtagta ggcggcattg gtcatcactt ttttgacata
     5161 gtcgcgcgtt tcggaaaacg ggatggtttc ggcatatacc gcgccttcga ggggcgtgtc
     5221 cgcctgccat cgacgcgccc tgccggggcc ggcgttgtag cctgcggtgg cgaggacttc
     5281 gttgttttgc aggcggcgtt tggtgtccgc catataccac gtccccatac ggatattgcc
     5341 gtcggcggtg taaagttgtg cggcatccat accgattttg ccggcgattt cgcgcgcggt
     5401 ggcaggcata acctgcatca gcccctgcgc gcctacgcgg gattgcgcgc ccataacgaa
     5461 gcggctttcc tgacgaatca gcccgtaaac ccacgccgga tcgacattaa cattttgcgc
     5521 gtggcggatt accgtgtctt taaacggcga aatgtagcgc aaggtgtagt tgagtttgcg
     5581 gtcggtgcgt tccgcgctgt tgaccgccat atcgtaaaaa ccgtggtcga acgcggtttg
     5641 cgcggcggtc agcagcttgt cttcatcgaa gccgcgtgtg gcgaaacgcc attccgcctg
     5701 agcctgacgg cgcattttcg catcgccggc ggttcggctg tttcggaaca gcaccagcgc
     5761 gcgcttaatc gcgccgtctt ccgccatacg gaggacgctg tttttgccgg catcgggcac
     5821 attgttgcgc gtatcgattt tgcgccccaa ctcttccccc gccagcaccg cataaaaatt
     5881 cctgcccgtc gctgccgcct gtttgtaaag tttttccgcc tcttgcgtgt tgcccgttgc
     5941 ggcgcgactg cgtgccagcc agtagagcca ggtcgggctt ttttgcagtt tttcgggcat
     6001 atgcgagatt acggaagcca gctcgtccca acgtcgggcg cgcaaggcgg cgcgggcgta
     6061 ccactcgatt tggtcgtcgg tcagttggcg gcggtcggca actttgccgt aatagtccaa
     6121 ggcggcaggc acattgaggc tttgcgactg ataatgcccc aatacgcccc acgcgaaact
     6181 gctctgttcg aggcttaaac cgctttccat ttcggacagc agggcggcgg cattcggcga
     6241 tttgcgtgct tctttgccga tgacgttcaa cagggcatat tcgcgcgaac cttgtgtacc
     6301 gccgtcaaac gggctgccca atgcggcggc aaggttgcgt gcgtctgtgg tttggcggcc
     6361 ggccagcagt ccgcgcacgc gcctccaggc gtcgttgccg tccaacaagc cggatgcggc
     6421 tgcctgttcc aacagtttgg tgcagcccga aggcagtttg cccgtatttt tgaccagttc
     6481 ggcggcacgc gtatagtcgt tgcggctcga atcggcgtag cattcgactt cttgggcgcg
     6541 ccctgccggt tcgagtttgg cgtattcctg tgcaaacagc gtccactgtt tgcgtgcgcc
     6601 caaagacttc agccactcgt tgcggacatt ttccgccatc gcactgtcgc cggcgttttc
     6661 caaataggcg gcgacggcgg catcgttttt ctgtttcact gcatccagtg cggacgggta
     6721 gccgccgtaa tctgccaacg tttttccttc gggttcggca gggcgggtgg gaacgcttgc
     6781 cgaaaggtcg gcagtttcta tattgtctgc cggggtcttg tcggctggca gtgtgtttgt
     6841 cgaagaacac gcggcaagca ccagggccgc cagcagcggc agggaatgct tcatagaggg
     6901 taggtacatc ggatttcctt aagaatcgga accctgaacg gtcagggttg gaaaagacaa
     6961 aatgccgtct gaacaggcgt ttgcatgaat tatatgccga aactgcaccg gctttggaat
     7021 gtttccgaca taatttatat ttttcaatca tttgccgttt tggtgcgaac cgctgccttt
     7081 gcccgtttc
//
LOCUS       DAXHPV010000108         7085 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.108, whole genome shotgun sequence.
ACCESSION   DAXHPV010000108 DAXHPV010000000
VERSION     DAXHPV010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7085)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7085)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7085
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.108"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(39..254)
                     /locus_tag="ACFM6C_001510"
                     /pseudo
     CDS             complement(39..254)
                     /locus_tag="ACFM6C_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981065.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0009289 - pilus [Evidence IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
     gene            complement(283..612)
                     /locus_tag="ACFM6C_001511"
     CDS             complement(283..612)
                     /locus_tag="ACFM6C_001511"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HFC6158952.1"
                     /translation="MGSLIIEDLQEGFGKEAVKGKEITVHYTGWLENGTKFDSSLDRR
                     QPLTITLGVGQVIKGWDEGFGGMKEGGKRKLTIPSEMGYGAHGAGGVIPPHATLIFEV
                     ELLKVYE"
     gene            complement(783..1010)
                     /locus_tag="ACFM6C_001512"
     CDS             complement(783..1010)
                     /locus_tag="ACFM6C_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2061 domain-containing protein"
                     /protein_id="HFC6158953.1"
                     /translation="MLKTLTFAALHFTTALSVTYVLTGSIGVSGAVALVEPLINTVVF
                     YSGLTKTSTALPRLAVLFVLSAASSPCPDFC"
     gene            1133..2086
                     /locus_tag="ACFM6C_001513"
     CDS             1133..2086
                     /locus_tag="ACFM6C_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HFC6158954.1"
                     /translation="MNHKKIVVLDADTLPGRVFHFDFPHELAVYGTTGADETAERVHD
                     AHVVITNKVMISADIIAANPQLELIAVSATGVNNVDIGAAEAAGVAVCNVRAYGNESV
                     AEHAFMLMIALMRNLPAYQRDVAAGLWEKSPFFCHYGAPIRDLNGKTLAVFGRGNIGR
                     TLAGYAQAFGMGVVFAEHKHASAVREGYVSFEDAVRAADVLSLHCPLNAQTENMIGEN
                     ELRQMKPGAVLINCGRGGLVDENALLAALKYGQIGGAGVDVLTEEPPRGGNPLLNARL
                     PNLIVTPHTAWASREALDRLFDILLANIHAFVKGEAQNRVV"
     gene            complement(2161..4218)
                     /gene="metG"
                     /locus_tag="ACFM6C_001514"
     CDS             complement(2161..4218)
                     /gene="metG"
                     /locus_tag="ACFM6C_001514"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HFC6158955.1"
                     /translation="MTRKILVTSALPYANGSIHLGHMVEHIQTDVWVRFQKLRGHECH
                     YCCADDTHGTPVMLAAQKQGIAPEDMIAKVREEHLADFTGFFIGYDNYYSTHSPENKQ
                     FSQDIYRALKANGKIESRVIEQLFDPEKQMFLPDRFVKGECPKCHAQDQYGDNCEVCG
                     TTYSPTELINPYSAVSGAKPELRESEHFFFKLGECADFLKAWTSGNNPHDGKPHLQAE
                     ALNKMKEWLGEGEETTLSDWDISRDAPYFGFEIPDAPGKYFYVWLDAPVGYMASFKNL
                     CDRIGVDFDEYFKADSQTEMYHFIGKDILYFHALFWPAMLHFSGHRAPTGVYAHGFLT
                     VDGQKMSKSRGTFITAKSYLEQGLNPEWMRYYIAAKLNSKIEDIDLNLQDFISRVNSD
                     LVGKYVNIAARASGFIAKRFEGCLKDVADSALLAKLTAQSEAIAECYESREYAKALRD
                     IMALADIVNEYVDANKPWELAKQEGQDERLHEVCSELINAFTMLTAYLAPVLPKVAEN
                     AAKFLNLEAITWANTRETLGKHSINKYEHLMQRVEQKQVDDLIEANKQSIQTTPAPAA
                     EESKYEKVAEQASFDDFMKIDMRVAKVLNCEAVEGSTKLLKFDLDFGFEKRIIFSGIA
                     ASYPNPAELNGRMVIAVANFAPRKMAKFGVSEGMILSAATADGKLKLLDVDAGAQPGD
                     KVG"
     gene            complement(4293..6131)
                     /gene="glmS"
                     /locus_tag="ACFM6C_001515"
     CDS             complement(4293..6131)
                     /gene="glmS"
                     /locus_tag="ACFM6C_001515"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:1901137 - carbohydrate derivative
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HFC6158956.1"
                     /translation="MCGIVGAIRAHHNVVDFLTDGLKRLEYRGYDSSGIAVNTDGKIK
                     RVRRVGRVQLMEDAAREKGISGGIGIGHTRWATHGGVTEPNAHPHISGGMIAVVHNGI
                     IENFESERKRLEGLGYRFESQTDTEVIAHSINHEYAQNGGRLFEAVQEAVKRFHGAYA
                     IAVIAQDKPDELVVARMGCPLLVALGDDETFIASDVSAVIAFTRRVAYLEDGDIALLA
                     SDGIKRLTDKNGLPAERKVKVSELSLASLELGPYSHFMQKEIHEQPRAIADTAEVFLD
                     GGFIPENFGKNAKSVFESIRSVKILACGTSYYAALTAKYWLESIAKIPADVEIASEYR
                     YRSVIADPDQLVITISQSGETLDTMEALKYAKSLGHRHSLSICNVMESALPRESSLVL
                     YTRAGAEIGVASTKAFTTQLVALFGLAVTLAKVRGLVSEEDEARYTEELRQLPGSVQH
                     ALNLEPQIAAWAQQFAKKTSALFLGRGIHYPIALEGALKLKEITYIHAEAYPAGELKH
                     GPLALVDENMPVVVIAPNDSLLDKVKANMQEVGARGGELFVFADLDSNFNATEGVHVI
                     RAPRHVGKLSPVVHTIPVQLLSYHVALARGTDVDKPRNLAKSVTVE"
     gene            6413..6931
                     /locus_tag="ACFM6C_001516"
     CDS             6413..6931
                     /locus_tag="ACFM6C_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158957.1"
                     /translation="MKQMLLAVGVVAVLAGCGKDAGGYEGYWREKSDKKEGVIAVKKE
                     KGNYFLNKINVFTGKEESLLLSEKDGALSINTGIGEIPIKLSDDGKELYVERRQYVKT
                     DAAMKDKIIAHQKKCGQTAQAYLDARKALPSNQTYQQHQAAIEQLKRRFEAEFDELEK
                     EIKCNGKPTLLF"
BASE COUNT         1487 a         1683 c         2125 g         1790 t
ORIGIN      
        1 ctcgtcggta cggaaactta tcgggtaaaa aggtttctct agtttggtgt cgattttctt
       61 gtcggtgctg ttgacggcag gtgcttggtc tcgatcttct tgtcgctgtc ggcggtaacg
      121 tcgtcggagt tggtgccggt gccggtgcgc gtaaccggct gtccgcagaa ccattttacc
      181 gaaccgtctt gacgcttggc ccacagggag agttttttgt ctttgatttc gttgtttacg
      241 ttgcttgaag ccattatgtc agacggtatt gcccgggcag ctttattcgt acactttcag
      301 cagctcgact tcaaatatca aagtggcgtg cggaggaatc acgccgcccg cgccgtgtgc
      361 gccgtagccc atttccgaag ggatggtcag cttgcgtttg ccgccttcct tcatgccgcc
      421 gaagccttcg tcccagcctt tgatgacttg tccgacaccg agcgtaatgg tcagcggctg
      481 gcggcggtcg aggctggagt cgaatttggt gccgttttcc agccaacctg tgtaatgcac
      541 ggtaatctct ttgcctttaa ctgcttcttt tccgaagcct tcctgcaaat cttcaataat
      601 caggctgccc atatctgtcc tttcgttgct tgttggtcaa aacggcaagg gtaacatacc
      661 gtccggcgaa gtcaaatacc gccaatcgtc agccgcaccg gtgcagcggg aacagcagtt
      721 gttgtttgcc cgttttgttt ttttcgtaac ggttccatgc tttttcatgg aaatatagtg
      781 gattaacaaa aatcagggca aggcgacgaa gccgcagaca gtacaaatag tacggcaagg
      841 cgaggcaacg ccgtactggt ttttgttaat ccactataga aaacgacggt gttgattagg
      901 ggttcgacca gcgcgaccgc gccagatacg cctatactgc ccgtcagcac ataggttaca
      961 ctgagggcgg tggtgaaatg cagtgcggca aaagtcaggg ttttaagcat catcctctcc
     1021 cgaattgaaa atttacggag agatgataaa gattatcatc aggccgtgcc ggtttaaatt
     1081 tgctatttac tgttagtgta aataaatcaa tttttaagta aggatagaaa tgatgaatca
     1141 caaaaagata gtcgttctgg atgcggatac tttgcccggc agggtttttc attttgattt
     1201 tccgcacgag ctcgcagttt acggtacgac aggtgcggat gaaacggcag aacgggtgca
     1261 cgacgcacat gttgtcatta ccaataaggt aatgatttcc gccgacatta ttgcggctaa
     1321 tccgcagttg gagctgattg ccgtcagtgc gaccggtgtg aacaatgtcg atattggggc
     1381 ggcggaggcg gcgggcgttg cggtatgcaa tgtccgcgcc tacggaaacg aatcggttgc
     1441 ggaacacgcc tttatgctga tgattgcgtt aatgcggaat ctgcctgcct atcagcgtga
     1501 tgttgcggcc ggtttgtggg aaaagtcgcc gtttttctgc cattacggcg cgccgattcg
     1561 ggatttgaac ggcaaaacgc tggcggtttt cggacgcggc aatatcggac ggacgcttgc
     1621 cggatacgcg caggcattcg gtatgggggt ggtgtttgcc gaacacaaac acgcgtccgc
     1681 tgtgcgcgaa ggctatgttt cctttgaaga tgcggtacgg gctgctgatg tgttgtcgct
     1741 gcactgtccg ctaaacgccc aaactgaaaa tatgataggc gaaaacgaat tgcggcagat
     1801 gaagcctggc gcggttttaa tcaattgtgg gcgcggcggg ctggtggatg aaaacgcgct
     1861 gcttgccgca ctcaaatacg ggcagatcgg cggggctggt gtcgatgttt tgacggagga
     1921 gccgccaagg ggcggcaatc ccctgctgaa tgcacgactt cccaatctga ttgttacgcc
     1981 gcataccgcg tgggcgagcc gcgaggcttt ggacaggctg ttcgatatat tgttggcgaa
     2041 cattcacgcc tttgtgaaag gcgaggcgca aaaccgggta gtttgagctt gtcgggataa
     2101 cgaaaaacaa tgccgtctga acgcccaaag ggttcagacg gcattttttg agatttctac
     2161 ttaaccgact ttgtcgcccg gttgcgcgcc tgcatccaca tccaagagct tcagtttccc
     2221 gtctgccgtg gcagcggaga gaatcatgcc ttcggatacg ccgaattttg ccattttgcg
     2281 cggggcgaag ttggcgacgg cgatgaccat gcggccgttc aattcggcag gatttgggta
     2341 agacgcggcg atgccggaga agatgatgcg tttttcaaaa ccgaaatcga ggtcgaattt
     2401 taagagtttg gtgctgcctt cgacggcttc gcagttcaat actttggcga cgcgcatatc
     2461 gattttcata aagtcgtcga agctcgcctg ttcggcgact ttttcgtatt tgctctcttc
     2521 ggcggcaggc gcgggggtcg tctgaatgct ttgtttgttg gcttcgatta aatcgtccac
     2581 ttgtttttgc tccactcgtt gcattaaatg ttcgtatttg ttgatggagt gtttgcccaa
     2641 ggtttcgcgt gtatttgccc aagtgatggc ttccaaattc aggaatttgg cggcattttc
     2701 ggccactttc ggcaacacgg gggcgaggta ggcggtcagc atggtaaagg cgttgatgag
     2761 ttcgctgcat acttcgtgca ggcgttcgtc ttggccttct tgtttggcga gttcccaagg
     2821 tttgttggca tcaacgtatt cgttgacaat gtctgccaag gccatgatgt cgcgcagggc
     2881 tttggcgtat tcgcggcttt cgtagcattc ggcaatggct tcgctttgtg cggtcagttt
     2941 tgccagcaat gcgctgtcgg caacgtcttt cagacagcct tcaaagcgtt tggcgatgaa
     3001 acctgaggcg cgggcggcga tgttgacgta tttgccgacg aggtcgctgt tgacgcggct
     3061 gataaagtct tgcaggttca aatcgatgtc ttcgattttg ctgttgagtt tggcggcgat
     3121 gtagtagcgc atccactcgg ggtttaaacc ttgttccaga taggatttgg cggtgataaa
     3181 cgtgccgcgc gatttggaca ttttttgtcc gtctacggtc aaaaagccgt gtgcgtacac
     3241 gccggtcggg gcgcggtggc cggagaaatg cagcatggca ggccagaaca gggcgtggaa
     3301 atagaggatg tctttgccga tgaagtggta catctcggtt tggctgtcgg ctttgaagta
     3361 ttcgtcaaaa tcgacgccga tgcggtcgca caggttttta aacgacgcca tgtagccgac
     3421 gggcgcgtcc agccagacgt agaagtattt gcccggcgcg tcggggattt caaaaccgaa
     3481 atacggcgcg tcgcgggaaa tatcccagtc ggacagggtg gtttcttcac cttcgcccag
     3541 ccattctttc attttgttga gggcttcggc ttgcagatgg ggcttgccgt cgtgcgggtt
     3601 gttgccggaa gtccatgctt tgaggaagtc ggcgcattct cccagtttga agaagaagtg
     3661 ttcggattcg cgcaattcgg gtttggctcc ggatacggcg gaatacgggt tgatcagttc
     3721 ggtcggggaa taggtcgtgc cgcagacttc gcagttgtcg ccgtattggt cttgggcgtg
     3781 gcatttcggg cattcgcctt tgacgaagcg gtcgggcagg aacatttgtt tttcggggtc
     3841 gaaaagctgc tcgatgacgc ggctttcgat tttgccgttg gctttcagtg cgcggtaaat
     3901 gtcttgggaa aactgtttgt tttcagggga atgggtgctg taataattgt cgtagccgat
     3961 gaaaaaaccg gtaaagtcgg cgaggtgttc ttcgcgcact ttggcaatca tgtcttcggg
     4021 cgcaatgcct tgtttttgcg cggcaagcat cacgggcgtg ccgtgggtgt cgtcggcgca
     4081 gcagtagtgg cactcgtggc cgcgcagttt ttgaaagcgc acccaaacgt cggtttggat
     4141 gtgttcgacc atgtggccga ggtggatgct gccgttggca tagggcaggg cggaggtaac
     4201 gaggattttg cgtgtcatat tgtgctttgc aaacaaaggg taaaggcgga ttataccgca
     4261 aatcagacgg catgttcgca aacaatccgg acttattcga ccgtaacgga tttcgccagg
     4321 ttgcgcggtt tgtctacatc ggtgccgcgt gcgagggcga catggtagga aaggagctgc
     4381 acggggatag tatgcacgac gggggacagt ttgccgacgt ggcgcggtgc gcggataacg
     4441 tgcacacctt cggtggcatt aaaattgctg tcgaggtcgg caaagacgaa aagttcgccg
     4501 ccgcgcgcgc cgacttcctg catattggct ttgactttgt ccaacaggct gtcgttgggt
     4561 gcgatgacga cgacgggcat gttttcgtcc accaaggcaa gcggcccgtg cttcagttcg
     4621 ccggcaggat aggcttcggc gtggatgtag gtgatttcct tcagttttaa cgcgccttcg
     4681 agggcaatcg ggtaatggat gccgcgcccc aaaaacagcg cgctggtttt cttggcaaac
     4741 tgttgcgccc aggcggcaat ttgcggttcg aggtttaaag cgtgctgcac gctgccggga
     4801 agctggcgga gttcttcggt gtaacgtgct tcgtcttctt cggaaaccaa accgcgcact
     4861 ttcgccagcg ttaccgccaa accgaacagc gcaaccagct gcgtggtaaa tgctttggtt
     4921 gaggcgacgc cgatttccgc accggcacgg gtataaagca cgaggctgct ttcgcgcggc
     4981 agggcggatt ccatcacgtt gcagatggag aggctgtggc ggtgtcccaa ggattttgcg
     5041 tatttcaacg cctccatcgt gtccagcgtt tcgccggatt gggaaatggt aatgaccagt
     5101 tgatccggat cggcaatcac gctgcggtat cggtattcgc tggcgatttc gacatcggct
     5161 gggattttgg cgatggattc caaccaatat ttggcggtca gtgcggcgta ataggacgtg
     5221 ccgcaggcaa ggattttgac gctgcggatg ctttcaaaca cgcttttggc gtttttgccg
     5281 aagttttcgg ggatgaagcc gccgtcgagg aaaacctccg ccgtgtctgc aatcgcgcgc
     5341 ggctgctcgt ggatttcctt ttgcataaag tggctgtacg gtcccagttc caaagaggcg
     5401 agcgagagtt cggatacctt gactttgcgt tcggcaggca ggccgttttt atcggtcagc
     5461 cgtttgatgc cgtctgaagc cagcagcgcg atgtcgccgt cttcgaggta cgccacgcgg
     5521 cgcgtaaagg cgatgacggc ggatacgtcc gaagcgataa aggtttcatc gtcgcccaaa
     5581 gcgaccaaaa gcgggcagcc catacgcgcc acaactaatt catcaggctt gtcttgggca
     5641 ataaccgcga tggcgtatgc gccgtggaaa cgtttgaccg cttcttgtac cgcttcaaac
     5701 agcctgccgc cgttttgcgc gtattcgtga ttgatgctgt gtgcgatgac ttcggtatcc
     5761 gtttgcgatt caaaacggta tcccaaacct tccaaacgtt tgcgttcgct ttcaaagttt
     5821 tcgatgatgc cgttgtgtac gaccgcaatc ataccgccgc tgatgtgcgg gtgggcgttc
     5881 ggctcagtaa cgccgccgtg tgtcgcccaa cgcgtatgtc cgatgccgat gccgccgctg
     5941 atgccttttt cgcgtgccgc gtcctccata agctgcacgc gtccgacgcg gcgcacacgt
     6001 ttgattttgc cgtcggtgtt gacggcaatg cctgatgagt cataaccccg gtattcgagg
     6061 cgtttaaggc cgtcggtcag aaaatcgacg acgttgtgat gggcgcggat ggcgccgacg
     6121 ataccgcaca taactgttcc ttagtatccg gttgaaaaaa aacaggcgcg gacggcttcc
     6181 gtgccgcacc ttcctcttcg gattataaac cgcctcccgc gccggaaaac agcaaaatgc
     6241 cgtctgaagg cttgggcttg ctcaaaaaag ggagggattt ccccgcctga ccggggtggg
     6301 cgttcagacg gcattgcctg ctgctggttt atagtttttg caaatcaata ttgacaagct
     6361 gaaaaaaaaa aacaatatac tcgctcggtc ttaatgttaa cggagtatgg aaatgaaaca
     6421 aatgctttta gccgtcggcg tggtggcagt gttggcgggc tgcggcaagg atgccggcgg
     6481 ttacgagggt tattggcgcg aaaagtcgga caaaaaagag ggcgtgattg ccgtcaaaaa
     6541 agaaaaaggc aattacttcc ttaataaaat caacgtattt acaggcaagg aggagtcttt
     6601 gcttttgtct gaaaaagacg gcgcgctttc gataaacacg gggatagggg aaatcccgat
     6661 caaactttcc gacgacggga aagagctgta tgtcgaacgc aggcagtatg tcaaaaccga
     6721 tgcggcgatg aaggacaaaa tcatcgccca tcagaaaaag tgcggacaaa cggcacaggc
     6781 atacctcgac gcgcgaaagg cgttgccgtc aaaccaaacg tatcagcagc atcaggcggc
     6841 gatcgagcag ttgaaacggc ggtttgaagc cgagttcgac gaattggaaa aagaaatcaa
     6901 atgcaacggc aaaccgacat tgttgtttta gcgtaggaca accgggagga tgccgccgtc
     6961 cgaatcggat gtgtggtttt cgtaccggta cgggcgggca ggaatgtccg ctttttttgt
     7021 tcggacgcgt ttgaatatcc gtccgattcc gtccgtttgc aaagggtatt tttgttcggg
     7081 cggaa
//
LOCUS       DAXHPV010000109         7013 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.109, whole genome shotgun sequence.
ACCESSION   DAXHPV010000109 DAXHPV010000000
VERSION     DAXHPV010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7013)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7013)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7013
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.109"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(76..1503)
                     /locus_tag="ACFM6C_001517"
     CDS             complement(76..1503)
                     /locus_tag="ACFM6C_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HFC6158958.1"
                     /translation="MRHLPLFSLMLFPASVYAADLDGANLNLLWSLPFALILLSIALG
                     PLFFSHTWHHHYGKITAFWTLLFLIPFSLVFGASAGIHTVAHALVEEYIPFILLLLAL
                     YTISGGILVWGDLNGTPKLNTALLAVGTALASIMGTTGAAMLMIRPLLKANQNRTRRV
                     HIVIFFIFLVANIGGGLTPLGDPPLFLGFLKGVDFMWTVKHMFAPVLISTAVLLTAFY
                     FIDNRFFKQESIAQDTPAQQQQEKPEKIAIFGKWNFLLLSGVVGAVLMSGLWKPEHPG
                     FEILGSRYALQNLVRDVILIALTAVSMAITPKQVRAGNEFNFEPIAEVGKLFLGIFIT
                     IFPVLSILKAGEAGALGGVVSLVHDTAGHPINVMYFWMSGILSAFLDNAPTYLVFFNM
                     AGGDAQALMTGTLFHSLLAVSMGSVFMGALTYIGNAPNFMVKAIAEQRGVPMPTFFGY
                     MMWSVAFLTPVFIVHTLIFFVFKLL"
     gene            complement(1861..2220)
                     /locus_tag="ACFM6C_001518"
     CDS             complement(1861..2220)
                     /locus_tag="ACFM6C_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaN family protein"
                     /protein_id="HFC6158959.1"
                     /translation="MIRYLLIACGGISLLLGIIGIFLPLLPTTPFVLLSAACWAKASP
                     RFHRWLHRHRYFGPMVHNWEQNGAVPRKAKIFAISMMTASCLMMFWQFPQRWWVGAVS
                     SIFCSLVAIWMWRRPES"
     gene            complement(2217..2822)
                     /locus_tag="ACFM6C_001519"
     CDS             complement(2217..2822)
                     /locus_tag="ACFM6C_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1415 domain-containing protein"
                     /protein_id="HFC6158960.1"
                     /translation="MTIMNINTSENKDAVAEHTGQWLEKAVIGLNLCPFAKAPHVKNL
                     VRIAISEAKHLDGFLEDLDEELQRLGNTPATELETTLLVHPTLFPDFGVFNDMLDIAD
                     TAIIENGLEGIIQIAPFHPDFQFEGTDSDDIGNYTNRSPYPTLHLIREDSIAKAAQAF
                     PDASAIFERNIALLEKMGHEGWAKLGITSCPYPHNKKNISK"
     gene            complement(2869..3351)
                     /locus_tag="ACFM6C_001520"
     CDS             complement(2869..3351)
                     /locus_tag="ACFM6C_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HFC6158961.1"
                     /translation="MPQLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLK
                     QLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFAL
                     TGETDYLLQAFFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLLKE
                     "
     regulatory      3555..3652
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            3863..4963
                     /gene="gcvT"
                     /locus_tag="ACFM6C_001521"
     CDS             3863..4963
                     /gene="gcvT"
                     /locus_tag="ACFM6C_001521"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004047 - aminomethyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HFC6158962.1"
                     /translation="MITLKTTPFHQAHQDAGAKLVDFAGWELPIHYGSQIAEHEAVRT
                     DAGMFDVSHMLVTDVAGANAKAFFRKLIANDVAKLAFVGKALYSALLNDNGGVIDDLI
                     VYRTNEAETQYRIVSNGATREKDTAQFHKVGQEFGVSFNPRYDLGMLAVQGPKAIEKL
                     LTVKPEWADVVNNLKPFQGADLGNDWFVARTGYTGEDGVEVILPGTEAVAFFKALQQA
                     GVQPCGLGARDTLRMEAGMNLYGNDMDDDTSPLEAGMGWTVDLKDESRDFVGKAALVA
                     LKEKGVAVKQVGLLLDKGGILRAHMEVLTDKGQGETTSGVFSPSLKQSIAIARVPKDF
                     DGDTAKVLIRGKEVDVRVLKLPFVRNGQKQFD"
     gene            5125..5511
                     /gene="gcvH"
                     /locus_tag="ACFM6C_001522"
     CDS             5125..5511
                     /gene="gcvH"
                     /locus_tag="ACFM6C_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005960 - glycine cleavage complex
                     [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HFC6158963.1"
                     /translation="MSNNIPAELKYVASHEWLRLEEDGTITVGITHHAQELLGDIVFV
                     ELPEVGANLAAEEQAGVVESVKAASDVYAPIAGEVVAVNEDLPSAPETANSDSYGAGW
                     FFKIKPVNPADYDGLLTAEQYAGEVD"
     gene            5663..6910
                     /gene="hemA"
                     /locus_tag="ACFM6C_001523"
     CDS             5663..6910
                     /gene="hemA"
                     /locus_tag="ACFM6C_001523"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HFC6158964.1"
                     /translation="MQLTAVGLNHQTAPLSIREKLAFAAAALPKAVRNLARSNAATEA
                     VILSTCNRTELYCVGDSEEIIRWLADYHSLPIEEIRPYLYALDMQETVRHAFRVACGL
                     DSMVLGEPQILGQIKDAVRVAQEQESMGKKLNALFQKTFSVAKEIRTDTAVGENSVSM
                     ASASVKLAEQIFPDIGDLNVLFIGAGEMIELVATYFAAKSPRLMTVANRTLARAQELC
                     DKLGVNAEPCLLSDLPAILHDYDVVVSSTASQLPIVGKGMVERALKQRQSMPLFMLDL
                     AVPRDIEAEVGDLNDAYLYTVDDMVNIVQSGKEARQKAAAAAETLVSEKVAEFVRQQQ
                     GRQSVPLIKALRDEGEKARKQVLENAMKQLAKGATAEEVLERLSVQLTNKLLHSPTQT
                     LNKAGEEDKDLVHAVAQIYHLDK"
BASE COUNT         1782 a         1695 c         1969 g         1567 t
ORIGIN      
        1 tgtcggaagg gaaaaatatt gatttgatta tgccggaatt taaaatgccg tctgaatgtt
       61 cagacggcat agcgtttaca gcagtttgaa aacgaaaaag ataagggtat gtacgatgaa
      121 gacgggtgtc aggaaggcga ccgaccacat catatagccg aagaaagtcg gcatcggtac
      181 gccgcgctgt tcggcaatgg ccttgaccat gaagttcggt gcgttgccga tgtaggtcag
      241 tgcgcccatg aataccgaac ccatagaaac cgccagcagc gaatgaaaca gggtacccgt
      301 catcaaggct tgggcatcgc cgcccgccat attgaaaaaa acgagataag tgggcgcgtt
      361 atccaagaat gccgacaata tgccgctcat ccaaaaatac atcacattaa tcggatgacc
      421 tgccgtatcg tgaaccagcg ataccacccc gcccagcgcg cctgcctcgc ctgctttcag
      481 aatgctcagg acgggaaaga tggtgatgaa gatgccgagg aagagtttgc ccacttcggc
      541 gatgggttca aagttgaatt cgttgcctgc gcggacttgt ttgggcgtga ttgccataga
      601 tacggcggtc aatgcaatca ggatgacatc gcggacgagg ttttgcaggg cgtaacggct
      661 gccgaggatt tcaaatcccg ggtgttcggg tttccaaagg ccggacatta gaaccgcgcc
      721 gaccacgccc gaaagcagga ggaagttcca tttgccgaag atggcgattt tttcgggttt
      781 ttcctgttgt tgttgtgccg gcgtatcttg tgcaatgctt tcctgtttga agaaacggtt
      841 gtcgatgaaa tagaaggcgg tcaacaggac agcggtgctg atcaggacgg gggcgaacat
      901 atgtttgacc gtccacatga aatctacgcc tttgaggaag ccgaggaaga gtggggggtc
      961 gcccaaaggg gtcagaccgc cgccgatgtt tgcaaccagg aaaatgaaga agatgacgat
     1021 gtgcacgcgg cgggtacggt tttggttggc tttcagcagc ggacgaatca tcagcattgc
     1081 tgcgccggtc gttcccatga tagaggcaag tgccgtaccg acggcaagca gggcggtgtt
     1141 gagcttgggt gtgccgttca agtcgcccca aaccaaaatg ccgcctgaaa tggtgtacag
     1201 ggcaagcagc agcaggatga aggggatgta ttcttcaacg agtgcgtgtg cgacggtatg
     1261 gataccggcg gacgcgccaa aaaccaaact gaacgggatg aggaagagca atgtccaaaa
     1321 ggcggtgatt ttgccgtaat ggtgatgcca ggtatgcgaa aaaaacaagg gacccaatgc
     1381 gatagacagc aaaatcaggg caaagggcag gctccacagc aggtttaggt ttgcgccgtc
     1441 caaatctgcg gcgtaaaccg atgcggggaa aagcattagt gaaaacaggg gtaggtggcg
     1501 catcgtgttt cctcgattca agcactgcct tgcgcggcgc gtgggagtga tacaggcacc
     1561 gtgccgcccg gacataggcg gactgtgctg cctgtttgtt tttgaaaaaa gttttccgat
     1621 tgattgtaaa gtaaataatc aggataaacc agtttcccaa accggaaggc ggcgggaagg
     1681 cggattgctg tgcttgggaa tatatgttct ttttgataaa taattttatt taaaacaaat
     1741 aaatatatgt ctttaataaa taatctatcg aaaacgaaaa atgaatttat tttaacatat
     1801 atttgcaatg aaacaggttt gccccccgtt tgtttgccct tatccctttc agtacggcat
     1861 tcaagattcg ggcctgcgcc acatccatat ggcgacaagg gaacaaaaaa tcgatgaaac
     1921 cgccccgacc caccagcgtt ggggaaactg ccaaaacatc atcaggcagg atgcggtcat
     1981 catactgatg gcgaaaatct tggctttgcg cggcactgcg ccgttttgtt cccagttatg
     2041 aaccatcggg ccgaaatagc ggtgccggtg cagccagcgg tgaaagcgcg gggatgcctt
     2101 tgcccagcag gcggcggaga gcagtacgaa cggcgtggtc ggcaacagcg gcagaaaaat
     2161 gccgatgatt cccaacagca gggagatgcc gccgcaggca attaaaagat aacgtatcat
     2221 tttgaaatat ttttcttatt gtgcggataa gggcaggatg tgataccgag ttttgcccag
     2281 ccttcatgtc ccattttttc cagcagggcg atattgcgtt cgaatattgc cgaagcgtcg
     2341 gggaaggctt gtgcggcttt ggcaatgctg tcttcgcgta tcagatgcag tgtcggatag
     2401 ggagaacggt tggtgtagtt gccgatgtcg tccgaatccg tgccttcaaa ttggaaatcg
     2461 ggatgaaacg gggcgatttg gatgatgcct tccaagccgt tttcaataat ggcggtatcg
     2521 gcaatatcga gcatatcgtt gaatacgccg aaatcgggga atagggtcgg gtgaaccagc
     2581 agggtggttt ccagttcggt ggcgggtgta ttgcccagtc gctgcagttc ttcgtccaag
     2641 tcttccaaaa aaccgtcaag gtgtttggct tcgctgatcg cgatgcggac aaggttttta
     2701 acgtgggggg ctttggcaaa gggacacagg ttcagaccga tgacggcttt ttccaaccat
     2761 tgtccggtgt gttcggcaac agcatcttta ttttcggaag tattgatatt cattattgtc
     2821 atgtaaatgt gtttgcagat tgcacgtgcg ggaaaatcgg gaagggcact attccttcag
     2881 caggtggttg agcggcaggg atgtggtgtg tttgatttct tttaaaacaa agctcgattg
     2941 ggcatcctgt acgccgtggt gggacaggag cgtatccaaa acaaaatggg aaaacgcgtt
     3001 catatcggta aaaaacgcct gaagcaggta gtcggtttcc cctgtcaggg cgaagcagct
     3061 caagacttca ggccattttc gaaccgatgc ggcaaagtct tcccgcgcgt cttttgcttt
     3121 gcggatggaa acgcggataa atgcctgaag ccccaggttg acggattccg gagacagcag
     3181 cgcggcatat tggcggacga tgccggcatc ttccaactgc ttcagacggc gcaggcacgg
     3241 agaaggcgaa agtgcgacac gttcggacag ttcgacattg gtcagcctgc cgttttcctg
     3301 gagaacctgt aagattttaa tatcggtttt gtctaaagtg agttggggca tatttgcgtt
     3361 ccgttttaag gaattcggat tgtctgtccg tatgtttgcg gcaatccgca cagatggaga
     3421 ccatattaac atataaaaag ttataccgtc atccgggaca aattttgttt tcggaaaatc
     3481 atgtgaaaac agaggcggtc ggtttgcatc tcttttaaga cggcttgccc aaaccgccga
     3541 ttcaagacat aatcgggaaa tgtgcaggag agtgttacac ccaactacaa tgtaaccacc
     3601 gaaggcgcag acacccttaa atcgctcagg tatcagggac tgcacattga aacaaacaat
     3661 ctggagagcg gcgttggaat aacgtccacc gaaggggaga aggccgtctg aaccaccatt
     3721 cagacaaccg cgcaaagcag tgagcagact ggtttgccat catgcggata cggccgaaaa
     3781 tctcaggttc aaggacagat agggtcatcc gcgcacaggt gcgcgggtgg catctgaaca
     3841 aaaaatccgg agaaacttga gaatgattac tctgaaaacc accccatttc atcaagccca
     3901 tcaagatgca ggcgcgaagc tggtcgattt tgccggctgg gagctgccca tccattatgg
     3961 ttcgcaaatc gccgaacacg aagccgtgcg caccgacgcc ggtatgtttg acgtatccca
     4021 tatgctcgtt accgacgtag caggcgcaaa tgccaaagcc tttttccgca aactgattgc
     4081 caacgacgtt gccaaactcg cttttgtcgg caaagccctt tattccgctt tgctcaacga
     4141 caacggcggc gtgattgacg acttaatcgt ttaccgcacc aacgaagccg aaacccaata
     4201 ccgcatcgtg tccaacggcg cgactcgcga aaaagatacg gcacaattcc acaaagtcgg
     4261 acaagagttc ggcgtttctt tcaatccgcg ctacgacctc ggcatgctcg ccgtacaagg
     4321 cccgaaagcc atcgagaaac tcctgaccgt caaacccgaa tgggcagatg tcgtcaacaa
     4381 cctcaaaccg ttccaaggcg cggatttggg caacgactgg tttgtcgccc gcaccggcta
     4441 taccggcgaa gacggcgtgg aagtcatcct gcccggcact gaagccgtcg cattcttcaa
     4501 agccctgcaa caagccggcg tacagccctg cggcctcggc gcgcgcgata ccctgcgcat
     4561 ggaagccggt atgaacctct acggcaacga tatggacgac gataccagcc cgctcgaagc
     4621 aggcatgggc tggacggttg acttgaaaga cgaaagccgc gacttcgtcg gtaaagccgc
     4681 attggtggca ttgaaagaaa aaggcgttgc cgtcaaacaa gtcggtttgc tgctcgacaa
     4741 aggcggcatc ctgcgcgcgc atatggaagt gttgaccgac aaaggccaag gcgaaaccac
     4801 cagcggcgta ttctcgccca gcctgaagca atccatcgcc atcgcccgcg tgccgaaaga
     4861 ctttgacggc gataccgcca aagttctgat tcgcggcaaa gaagtggacg tacgcgtact
     4921 gaagctgccg tttgtgcgca acggacagaa acagtttgat tgatgcggtt tcagacggca
     4981 ttttcatttc atatgccgtc tgaaagcagg ttttaattgt tgtccgatac ggacgtttgt
     5041 agaaagcatt gaacaaggca tctgtggata ttgattcatg cagatgccgt ctgaaaataa
     5101 cccctatcaa tggagtatca aaccatgagc aacaacatcc cggccgaact gaaatacgtt
     5161 gccagccatg aatggctgcg ccttgaagaa gacggtacga ttaccgtcgg cattacccac
     5221 cacgcgcaag agctgttggg cgacatcgtg ttcgtcgagc tgcccgaagt cggcgcgaac
     5281 cttgccgctg aagagcaagc cggtgtggtt gagtctgtaa aagccgcgtc cgacgtgtac
     5341 gcaccgattg caggcgaagt cgttgccgtc aacgaagatt tgccaagtgc tccggaaact
     5401 gccaacagcg attcttacgg cgcaggctgg ttcttcaaaa tcaaacctgt caatcctgcc
     5461 gattacgacg gtctgctgac tgccgaacaa tacgcgggcg aagtagatta aaccgcccgg
     5521 ctgcccgacg gcaaccgccg gacaaacgga aactgcacct tcagacggca tttttgcggt
     5581 cggaggtgca gttttttgtc cgtgttttaa ggaagcagtt aggctataat aacggtctat
     5641 attcatcttt accgattttt tcatgcaact taccgctgtc ggactcaatc atcaaaccgc
     5701 acctttaagc atacgggaaa agctggcgtt tgccgccgcc gccctgccta aagccgtccg
     5761 caatcttgcc cgaagcaatg cggcaacgga ggcggtaatc ctttctacct gcaaccgcac
     5821 cgagctttac tgcgtcggtg attcggaaga aatcatccga tggcttgccg attaccacag
     5881 tttgccgatt gaagaaatcc gtccgtatct gtacgcgctg gatatgcagg agactgtgcg
     5941 ccatgctttc cgcgtcgcct gcggcttgga ttcgatggtg ttgggcgagc cgcagatttt
     6001 aggacagatt aaggatgcgg tcagggttgc tcaagagcag gaaagtatgg gtaagaaact
     6061 caatgccctg ttccaaaaaa ccttttccgt tgctaaagag atccgtaccg ataccgctgt
     6121 cggcgagaac tcggtttcca tggcttccgc ttccgtcaag ttggcagagc agattttccc
     6181 cgacatcggc gatttgaatg tcttgtttat cggtgcgggt gagatgattg agttggttgc
     6241 tacttatttt gccgccaaaa gtccccggct gatgacggtt gccaaccgga cgctggcgcg
     6301 tgcacaggag ttgtgcgaca agctcggtgt caacgccgaa ccgtgcctgc tgtccgatct
     6361 gcctgccatt ctgcacgatt acgacgtagt ggtttcttca acggcaagcc agcttccgat
     6421 agtcggcaaa ggcatggtgg agcgtgcatt gaaacaaagg cagagtatgc cgttgttcat
     6481 gcttgatttg gcagtgccgc gtgacattga agcggaagtc ggcgatttga atgatgccta
     6541 tctttatact gtggacgata tggtcaatat cgtccaaagc ggcaaggagg caaggcagaa
     6601 ggccgccgcc gccgccgaaa cgctggtgtc cgagaaggtt gccgaatttg tcaggcagca
     6661 gcagggcagg cagagcgtcc ccttgattaa agccttgcgg gacgagggcg agaaagcgcg
     6721 caagcaggtg ttggaaaatg cgatgaaaca gcttgccaaa ggcgcaacgg cagaagaggt
     6781 tttggaacgg ctgtccgtcc aactgaccaa caagctgctg cattcgccga cccaaacttt
     6841 gaataaggcg ggggaagaag ataaggattt ggttcacgcc gtcgcgcaga tttatcattt
     6901 ggacaaataa cggtgcgccg gaaaaggatg cgtctgaagg ggtttcagac ggcatatttg
     6961 tgtgccgcct gacaacatcg tgaaatccca cattatatcg atgtaatcac aaa
//
LOCUS       DAXHPV010000110         6970 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.110, whole genome shotgun sequence.
ACCESSION   DAXHPV010000110 DAXHPV010000000
VERSION     DAXHPV010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6970)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6970)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6970
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.110"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            409..615
                     /locus_tag="ACFM6C_001524"
                     /pseudo
     CDS             409..615
                     /locus_tag="ACFM6C_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311098.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015129 - lactate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015727 - lactate transport [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
     gene            615..812
                     /locus_tag="ACFM6C_001525"
                     /pseudo
     CDS             615..812
                     /locus_tag="ACFM6C_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003757319.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(1004..2407)
                     /gene="mtrE"
                     /locus_tag="ACFM6C_001526"
     CDS             complement(1004..2407)
                     /gene="mtrE"
                     /locus_tag="ACFM6C_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit MtrE"
                     /protein_id="HFC6158965.1"
                     /translation="MDTTLKTTLTSVAAAFALSACTMIPQYEQPKVEVAETFKNDTAD
                     SGIRAVDLGWHDYFADPRLQKLIDIALERNTSLRTAVLNSEIYRKQYMIERNNLLPTL
                     AANANDSRQGSLSGGNVSSSYKVGLGAASYELDLFGRVRSSSEAALQGYFASTANRDA
                     AHLSLIATVAKAYFNERYAEEAMSLAQRVLKTREATYKLSELRYKAGVISAVALRQQE
                     ALIESAKADYAHAARSREQARNALATLINQPIPDDLPAGLPLDKQFFVEKLPAGLSSE
                     VLLDRPDIRAAEHALKQANANIGAARAAFFPSIRLTGSVGTGSAELGGLFKSGTGVWS
                     FAPSITLPIFTWGTNKANLDAAKLRQQAQIVAYEAAVQSAFQDVANALAAREQLDKAY
                     DALSKQSRASKEALRLVGLRYKHGVSGALDLLDAERSSYSAEGAALSAQLTRAENLAD
                     LYKALGGGLKRDTQTDK"
     gene            complement(2462..5665)
                     /gene="mtrD"
                     /locus_tag="ACFM6C_001527"
     CDS             complement(2462..5665)
                     /gene="mtrD"
                     /locus_tag="ACFM6C_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit MtrD"
                     /protein_id="HFC6158966.1"
                     /translation="MAKFFIDRPIFAWVISIFIIAAGIFGIKSLPVSQYPSVAAPTIT
                     LHATYPGASAQVMEDSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENL
                     AQVEVQNKLSEVLSTLPATVQQYGVTVSKARSNFLMIVMLSSDVQSTEEMNDYAQRNI
                     VPELQRIEGVGQVRLFGAQRAMRIWVDPKKLQNYNLSFADIGSALSAQNVQISAGSIG
                     SLPAVRGQTVTATVTAQGQLGTAEEFGNVILRANTDGSNVYLKDVARVGLGMEDYSSS
                     TRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEIS
                     IEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLT
                     MFAMVLVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISV
                     FVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCATMLKTIPKGHHEEKKG
                     FFGWFNKKFNSWTHGYEGRVAKVLRKTFRMMVVYIGLAVVGVFLFMRLPTSFLPTEDQ
                     GFVMVSVQLPAGATQERTNATLAQVTQLAKSIPEIENIITVSGFSFSGSGQNMAMGFA
                     ILKDWNERTAPGSDAVAIAGKLTGMMMGTLKDGFGIAVVPPPILELGNGSGLSINLQD
                     RNNTGHTALLAKRNELIQKMRASGLFDPSTVRAGGLEDSPQLKIDINRAAAAAQGISF
                     ADIRTALASALSSSYVSDFPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPL
                     STIATVSWENGTEQSVRFNGYPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSLEW
                     GGQSREEAKGGSQTLILYGLAVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVT
                     GRNLFEGLLGSVPSFANDIYFQVGFVTVMGLSAKNAILIIEFAKDLQAQGKSAVEAAL
                     EAARLRFRPIIMTSFAFILGVVPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVP
                     LFYVVVRKFFKETAHEHEMAVKHAAEAGITGSDDSQH"
     gene            complement(5677..6915)
                     /gene="mtrC"
                     /locus_tag="ACFM6C_001528"
     CDS             complement(5677..6915)
                     /gene="mtrC"
                     /locus_tag="ACFM6C_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit MtrC"
                     /protein_id="HFC6158967.1"
                     /translation="MAFYAFKAMRAAALAAAVALVLSSCGKGGDAAQGGQPAGREAPA
                     PVVGVVTVHPQTVALTVELPGRLESLRTADVRAQVGGIIQKRLFQEGSYVRAGQPLYQ
                     IDSSTYEAGLESARAQLATAQATLAKADADLARYKPLVAAEAVSRQEYDAAVTAKRSA
                     EAGVKAAQAAIKSAGINLNRSRITAPISGFIGQSKVSEGTLLNAGDTTVLATIRQTNP
                     MYVNVTQSASEVMKLRRQIAEGKLLAADGVIAVGIKFDDGTVYPEKGRLLFADPAVNE
                     STGQITLRAAVPNDQNILMPGLYVRVLMDQVAVDNAFVVPQQAVTRGAKDTVMIVNAQ
                     GGMEPREVTVAQQQGTNWIVTSGLKDGDKVVVEGISIASITGAKKVTPKEWAPSENQA
                     AAPQSGVQTASEAKTASEAE"
BASE COUNT         1613 a         1956 c         1836 g         1565 t
ORIGIN      
        1 atcaaacatc aaattggact gaccaatcag ggcggattct aatgacacgc cgttcccgcc
       61 gtcaacggca tttacctcgc accgcccccg aaacacagga aaaaactaca ccaaactaca
      121 atttttgttt atgcaaatat ttgttttgac aggatttaaa cgaaagctcc gattcaaatc
      181 tgccgaaccg cccaaaaata tatagtggat taacaaaaat caggacaagg cgacgaagcc
      241 gcagacagta cagatagtac ggtaaggcga ggcaacgccg tactggttta aatttaatcc
      301 actctattga cctgaatatt aaagtttcgc aaagtaatgc aacgttgctt taattggttt
      361 gaccactatt gccgacgatt agaaaaatat tttcagagat gttcaattat ggaaacttgg
      421 gttcaaaact acacggcaat cggcggcagc ctgtatctga ctgccgccgc cgcactctta
      481 cccatcgtct ttttctttgc cgcgctgacc gtcctgaagc tgaaaggcta tcaggcgggg
      541 ctttatacgc tgctgattgc gcttgccgtt gccgtattcg gcttcgggat gccggcgggt
      601 atggcggttt cttccctgcc gccgcagccg cattgaccca acgcccctac gccacgctgg
      661 atttgaccgc gcattacaaa atcggcaaat ccacccgcat cggtttggac tttgaaaacg
      721 tgttcaacaa acgctaccgc cctatgcccg acattcacgt ttacggcacg ccgcgcagcc
      781 tgaccgcaac cgtcaaacat atagtggatt aacaaaaatc aggacaaggc gacgaagccg
      841 cagacagtac aaatagtaca acttggtgct tcagcacctt agagaatcgt tctctttaag
      901 ctaaggcgag ccaacgccgt actggttttt gttaatccac tataaagaaa gaaatgccgt
      961 ctgaaacctt atcgtttcag acggcatttt attgcccgac cggttatttg tcggtttggg
     1021 tatcccgttt caatccgccg ccgagtgcct tgtacaaatc ggcaaggttt tcggcgcggg
     1081 tcagttgtgc cgacaaagcc gcaccttccg ccgaatagct gctgcgttcc gcatcgagca
     1141 aatcaagcgc gccggatacg ccgtgtttgt aacgcagacc gaccaaacgc aacgcttctt
     1201 tagaggcgcg gctttgtttg cttaaagcgt cataggcttt atccagctgc tcgcgcgccg
     1261 ccaatgcgtt tgccacgtct tgaaaggcgg attggacggc ggcttcatag gcaacgattt
     1321 gtgcctgttg gcgcagcttg gctgcatcaa ggttggcttt gttcgtgccc caggtaaaaa
     1381 tcggcagggt aatagacggc gcaaacgacc aaacgcccgt gccgcttttg aacagcccgc
     1441 ccaattcggc agaacccgta ccaacgcttc cggtcaggcg gatggatggg aaaaaggcgg
     1501 cgcgtgccgc accgatattg gcgtttgcct gtttgagcgc gtgttcggca gcacggatat
     1561 cgggacggtc gagcaatact tcggaactca aaccggccgg cagtttttca acaaaaaact
     1621 gcttgtccaa cggcaaaccg gcgggcaggt cgtcgggtat cggttggtta atcaaggttg
     1681 ccaaggcatt gcgcgcctgt tcgcggctgc gcgcggcatg ggcataatcg gctttggcgg
     1741 attcgatgag ggcttcctgc tggcgtaagg cgacggcgga aatcacgcct gccttgtaac
     1801 gcaattcaga cagcttgtag gttgcttcgc gcgttttcaa gacacgctgc gccaaagaca
     1861 tcgcttcttc ggcataacgt tcgttgaaat aggctttggc aacggtggca atcaggctca
     1921 aatgtgccgc atcgcggttg gcggtgctgg caaaatagcc ttgcagtgct gcctcgctgc
     1981 tgctgcggac gcgtccgaac aggtcgagtt cgtaagatgc cgcacccagt ccgactttgt
     2041 agctgctgct tacattgccg ccgctcaagc tgccttggcg cgagtcgttc gcattggcgg
     2101 caagcgtggg caggaggttg ttgcgctcaa tcatgtattg tttgcggtag atttcgctgt
     2161 tcaatacggc ggtacgcaaa ctggtattgc gctcgagtgc gatgtcgatc agcttttgca
     2221 ggcgcgggtc ggcaaaatag tcatgccaac ccaaatcgac cgcacggatg ccgctgtcgg
     2281 cggtatcgtt tttgaacgtt tcggcaactt cgactttggg ctgctcgtat tggggaatca
     2341 tggtgcaggc ggataatgcg aaggctgctg caacagaagt caaggtggtt ttcaatgtag
     2401 tatccataaa aaagtcctga tgccgtctga aaacccgtgg gcgttcagac ggcatggttg
     2461 cttaatgttg gctgtcgtcc gaaccggtga tgcccgcttc ggcggcgtgt tttactgcca
     2521 tttcgtgttc gtgcgcggtt tctttgaaga atttgcgcac caccacatag aaaagcggaa
     2581 caaggaacac ggacaagagc gtgccgatga gcatccccca gaatacggtc gtgccgatgg
     2641 cgcgctggct ggcagaactt gcaccaccgg caatatacag gggaaccacg cccaaaataa
     2701 aggcgaacga ggtcatgata atcggacgga aacgcaggcg ggcggcttcc aaagcggctt
     2761 cgaccgcgct tttcccttgc gcttgaaggt ctttggcaaa ctcgataatc aaaatcgcgt
     2821 ttttcgcact caaacccatc acggtaacga aaccgacttg aaagtagatg tcgttggcga
     2881 acgagggaac gctgcccaac agtccttcaa acaggttgcg cccggttacg cccgcagccg
     2941 caccgatcaa acccaacgga atcacaagga tgaccgccag cggaatcgac cagctttcat
     3001 aaagcgcggc aagtaccaaa aatacggctg caaccgccaa accgtacaaa atcagggttt
     3061 gcgagccgcc ttttgcctct tcgcgcgact gtccgcccca ctccaggctg taaccgccgc
     3121 ccaattcgtc aaccattttt tgaaccgccg ccatagcctg cccggtggaa acgccggttg
     3181 caggcgaagc ggacagcttc atcgaaggat aaccgttgaa gcgtacgctc tgttccgtac
     3241 cgttttccca agaaacagta gcaatggtgg aaagcggtac ggcgacgccg gatttgttcg
     3301 gcacggtcag gttcaaaata tcggcaggct gcatacgggc atcctcgtcg gcctgcacca
     3361 tcacgcgttg cagacggcct tggttcggga agtcgctgac ataagacgaa ctcagcgcgc
     3421 ttgccaatgc ggtgcggatg tcggcaaacg aaatgccttg cgccgccgcg gcggcacggt
     3481 tgatgtcgat tttcaactgc ggcgagtctt ccaaaccgcc ggcacggacg gtgctggggt
     3541 caaacaaacc gctggcacgc attttctgaa tcaactcgtt gcgcttcgcc agcaatgcgg
     3601 tatggccggt attgttgcgg tcttgcaggt tgatgctcag acccgaaccg ttgcccaact
     3661 ccagaatcgg aggcgggacg acggcgatgc caaaaccgtc tttaagcgtc cccatcatca
     3721 tacccgtcag cttgccggca atcgcaacgg catcgctgcc gggcgcggta cgctcgttcc
     3781 aatctttcaa tatggcaaaa cccatcgcca tattctgacc gctgcccgaa aagctgaagc
     3841 cggaaacggt aatgatgttt tctatttcag gaatgctttt cgccagttgg gtaacttgcg
     3901 ccaaagtcgc attggtgcgc tcttgggtcg ctcctgcagg cagttgcacg ctgaccatga
     3961 cgaagccttg gtcttcggtc ggcaggaatg aagtcggcag gcgcataaac aggaacacgc
     4021 ccacaaccgc caagccgata tagacaacca tcatgcggaa agtcttacgc agcactttgg
     4081 caacccggcc ttcgtaaccg tgcgtccaac tgttgaattt cttgttaaac cagccgaaga
     4141 aacctttttt ctcttcgtga tgccctttcg ggattgtctt caacattgtg gcacacaaag
     4201 caggggtaag ggtcagcgca aggaaggcgg agaatgcgat tgatgacgcc atcgtcaggg
     4261 caaactgttt gtaaatattg cccgtcgccc cgctgaacat cgccaacggt acgaacacgg
     4321 aaatcagaac ggcggtaata ccgatgaccg cgcccgaaat ctgacccatc gcttttttgg
     4381 tcgcttcttt gggcggcaag ccttcacccg ccataatgcg ctcgacgttt tcaaccacca
     4441 caatcgcgtc atcgaccacg atgccgatga ccaaaaccat cgcaaacatg gtcagtacgt
     4501 taatcgacat gcccatataa gagatgaagg cgaaaccgcc caacagcgaa atcggtacga
     4561 cgatggtcgg aatcagcgta taacggatgt tttgcaggaa gagatacatt acgacaaaca
     4621 ccagcaccat cgcttcgatt aaagtgtgaa tcactttttc aatcgaaatt tcgacgaatt
     4681 tggaagtatc gtaaggggtt ttccagctca taccctgagg aaagtatttt tccaacgtcg
     4741 ccatgcgttc tttaaccgcc tttgccgtcg ccatcgcatt gccgctgttg gacagcatca
     4801 ccgccatacc ggtggtattt acaccgttca gacgggttga ggaagaatag tcttccatac
     4861 ccagtccgac ccttgccaca tccttcaggt aaacattaga accgtcggta ttggcgcgga
     4921 ggatgacgtt gccgaattct tctgccgtac ccaactgccc ttgcgccgtt acggtagccg
     4981 taaccgtctg tccgcgaacg gcgggaagcg aaccgataga acccgctgaa atctggacgt
     5041 tctgggcgga cagcgcgctg ccgatatcgg caaacgacaa attgtagttt tgcagtttct
     5101 taggatcaac ccaaatccgc atcgcgcgtt gcgcgccgaa caggcgtacc tgccccacgc
     5161 cttcgatacg ctgcaactcg ggaacgatat tacgctgcgc gtagtcgttc atctcttcgg
     5221 ttgactgcac atccgacgaa agcatcacaa tcatcaggaa attggaacgc gccttggata
     5281 cggttacgcc gtattgctgg acggttgccg gcagcgtgct caatacttcg gaaagcttgt
     5341 tctgcacttc cacctgcgcc agattctcgt cggtatcggg cgtaaaggtc aggctcacgc
     5401 tgccgctgcc gctcgaatcg gcggaagtgg acatataatc caaaccttcc acgccgttca
     5461 tattccgctc gatcacggaa agcacgctgt cttccattac ctgcgcggac gcacccggat
     5521 aagtggcgtg caaagtaatg gtcggggcgg cgacagacgg atattgcgaa acaggcaggc
     5581 ttttgatgcc gaaaataccc gccgcaataa tgaaaatcga aataacccac gcaaaaatag
     5641 ggcggtcgat aaaaaattta gccatcgatg ccttccttat tccgcttcag aagcagtttt
     5701 ggcttcagat gccgtctgaa cgccggattg aggcgcggcg gcttggtttt cagacggcgc
     5761 ccattctttg ggcgttacct ttttcgcacc cgttatactg gcgatactga tgccttccac
     5821 aaccaccttg tccccgtcct tcagacccga cgtaacaatc caattcgtac cctgctgttg
     5881 cgcaaccgtt acctcgcggg gttccatacc gccttgggca ttcacaatca tcacggtatc
     5941 tttcgcaccg cgcgttaccg cctgctgcgg cacaacaaat gcgttatcca ccgccacttg
     6001 gtccatcagc acgcgcacat acaggccggg catcaggata ttctgatcgt tcggtacggc
     6061 ggcgcgcagg gtaatctgac cggtcgattc gttgacggcc ggatcggcaa acagcaggcg
     6121 gcctttttca gggtaaactg tgccgtcgtc aaatttgatg ccgaccgcaa tcacaccatc
     6181 cgccgccagc agtttgcctt cggctatctg acggcgcaat ttcatcactt cggatgcaga
     6241 ctgggtaacg ttcacataca tcggattggt ttggcggatg gttgccagca cggtcgtatc
     6301 gcccgcattc aacagcgtac cttcggaaac tttggactga ccgataaagc cggaaatcgg
     6361 cgcggtaatg cgcgaacggt tcagattaat gccggcagat ttgattgccg cctgtgctgc
     6421 tttgacacct gcctcggcag aacgtttcgc cgttaccgca gcatcgtatt cctgccggct
     6481 gacggcttcg gcggcaacca aaggcttgta tcgcgccaaa tccgcatccg ctttggcaag
     6541 cgttgcctga gccgttgcca gttgcgcgcg cgcgctttcc agacctgctt cataagtgga
     6601 actgtcgatc tgatacagcg gctgtccggc acggacataa ctgccttctt ggaacaggcg
     6661 tttttggatg atgccgccga cttgggcgcg gacatcggcg gtacgcagcg attccaaacg
     6721 ccccggcaac tcgacggtca atgcgacggt ttgcggatgg acggttacga caccgacgac
     6781 gggcgcaggg gcttcccgac cagcaggctg cccgccctgc gccgcgtctc cgcctttacc
     6841 gcaagacgac agtaccaatg caacggcggc agccaacgcg gccgcacgca tcgccttaaa
     6901 agcataaaaa gccattattt atcctatctg tctggtttga tgtaaagggt tttgccaatc
     6961 aacaggcatt
//
LOCUS       DAXHPV010000111         6832 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.111, whole genome shotgun sequence.
ACCESSION   DAXHPV010000111 DAXHPV010000000
VERSION     DAXHPV010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6832)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6832)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6832
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.111"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(76..1422)
                     /gene="mnmE"
                     /locus_tag="ACFM6C_001529"
     CDS             complement(76..1422)
                     /gene="mnmE"
                     /locus_tag="ACFM6C_001529"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HFC6158968.1"
                     /translation="MSDNVPTIAAVATAPGRGGVGVIRISGKNLLPMAQALCGKTPKP
                     RTATYADFTDADGQAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELG
                     ARLAEPGEFTKRAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLV
                     EDLITLRMLVEATLDFPEEDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLN
                     VVLVGAPNVGKSSLLNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRE
                     TDDVVERIGIERSRKAVSEADVALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSD
                     LHAHAAGRFGTGAETVIALSAKTGDGLDALKRTLLREAGWQGESEGLFLARTRHVNAL
                     KAAQEELSLAALCGNHQIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK"
     gene            1553..1708
                     /locus_tag="ACFM6C_001530"
     CDS             1553..1708
                     /locus_tag="ACFM6C_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158969.1"
                     /translation="MEKRNTYAFLLGIGSLLGLFHPAKTAIRPNPADDLKNIGGDFQR
                     AIEKARK"
     gene            1705..2133
                     /locus_tag="ACFM6C_001531"
     CDS             1705..2133
                     /locus_tag="ACFM6C_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2335 domain-containing protein"
                     /protein_id="HFC6158970.1"
                     /translation="MTENAQDKARQAVETVVKSPELVEQILSDEYVQIMIARRFHSGP
                     LPPSDLAQYNDIISNGADRIMAMAEKEQAVRHETIRQDQTFNRRGQLYGFISVILILL
                     FAVFLVWSGYPATAASLAGGTVVALAGAFVIGRSRDQGKN"
     gene            2267..6595
                     /gene="app"
                     /locus_tag="ACFM6C_001532"
     CDS             2267..6595
                     /gene="app"
                     /locus_tag="ACFM6C_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_168458961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesion and penetration autotransporter App"
                     /protein_id="HFC6158971.1"
                     /translation="MKTTDKRTTETHRKAPKTGRIRFSPAYLAICLSFGIFPQAWAGH
                     TYFGINYQYYRDFAENKGKFAVGAKDIEVYNKKGELVGKSMTKAPMIDFSVVSRNGVA
                     ALVGDQYIVSVAHNVGYRDVDFGAEGRNPDQHRFTYKIVKRNNYKKDETHPYEKDYHN
                     PRLHKFVTEAAPIDMTSDMDGNKYTDRTKYPERVRIGSGWQFWRNDQDKGDQIAGAYH
                     YLTAGNTHNQGGAGGGWSSLSGDVRQAGNYGPIPIAGSSGDSGSPMFIYDAEKQKWLI
                     NGVLRTGNPWAGKENTFQLVRKSFFDEILEKDLRTSFYSPSGNGAYTITDKGDGNGIV
                     KQQTGRPSEVRIGLKDDKLPAEGKDDVYQYQGPNIYLPRLNNGGNLYFGDQKNGTVTL
                     STNINQGAGGLYFEGDFTVSPENNETWQGAGVHISEDSTVTWKVNGVANDRLSKIGKG
                     TLHVQAKGENQGSISVGDGKVILDQQADENNKKQAFSEIGLVSGRGTVQLNADNQFNP
                     DKLYFGFRGGRLDLNGHSLSFHRIQNTDEGAMIVNHNQDKESTVTITGNKDIATTGNN
                     NSLDSKKEIAYNGWFGEKDTTKTNGRLNLVYQPAAEDRTLLLSGGTNLNGNITQTNGK
                     LFFSGRPTPHAYNHLNDHWSQKEGIPRGEIVWDNDWINRTFKAENFLIKGGQAVVSRN
                     VAKVEGDWHLSNHAQAVFGVAPHQSHTICTRSDWTGLTNCVEKTITDEKVIASLTNTD
                     ISGNVSLANHAHLNLTGLATLNGNLTAGGDTHYEVTHNATQNGNLSLVGNAQATFNQA
                     TLNGNTSASGNASFNLSDHAAQNGDLTLSGNAKANVSHSAFNGNVSLADKAVFHFENS
                     RLTGQISGGKDTALHLKDSEWMLPSGTELGNLNLDNATITLNSAYRHDAAGAQTGSAT
                     DAPRRRSRRSRRSLLSVTPPTSAESRFNTLTVNGKLNGQGTFRFMSELFGYRSDKLKL
                     AESSEGTYTLAVNNTGNEPVSLDQLTVVEGKDNKPLSENLNFTLQNEHVDAGAWRYQL
                     IRKDGEFRLHNPVKEQELSDKLGKAEAKKQAGKDNAQSLDALIAAGRDAVEKTESVAE
                     PARQAGGENVGIMQAEEEKKRVQADKDSALAKQREAETRPATTAFPRARRARRDLPQP
                     QPQPQPQPQRDLISRYTNSGLSEFSATLNSVFAVQDELDRVFAEDRRNAVWTSGIRDT
                     KHYRSQDFRAYSQQTNLRQIGMQKNLGSGRVGILFSHNRTENTFDDGIGNSARLAHGA
                     VFGQYGIGRFDIGISAGAGFSSGSLSDGIGSKIRRRVLHYGIQARYRAGFGGFGIEPH
                     IGATRYFVQKADYRYENVNIATPGLAFNRYRAGIKADYSFKPAQHISITPYLSLSYTD
                     AASGKVRTRVNTAVLAQDFGKTRSAEWGVNAEIKGFTLSLHAAAAKGPQLEAQHSAGI
                     KLGYRW"
BASE COUNT         1804 a         1994 c         1697 g         1337 t
ORIGIN      
        1 caaacggatc ggattcccgt ttttatggga taacggaatg ttcagccgga caccgccacg
       61 atgctttcga tccgtttatt ttccgatgca gaatctcgaa aaaatcacgc cgagcaggtc
      121 gtccgccgta aactcgcccg tgatttcgcc gcatgcgacc tgcgccagcc gcaagtgttc
      181 ggcaaacagc tcgatttgat ggttgccgca caatgccgcc agcgacaatt cttcctgcgc
      241 tgctttgagt gcgttgacgt gccgcgtccg cgccaaaaac agcccttcgc tttcgccctg
      301 ccaaccggcc tcgcgcaaca acgtccgttt cagcgcgtcc aagccgtcgc cggttttcgc
      361 cgacagcgcg atgacggttt ctgcgcccgt accgaacctg cctgccgcgt gtgcgtgcaa
      421 atcggatttg ctgtggattt cgatgcgttt caactccggc ggcaacgcgt ccaaaatcgc
      481 ccgtgtcttt tcattcaaac cctcgcgcgg atcgaccaac accagcgcga catcggcttc
      541 ggatacggct ttgcggctgc gttcgatgcc gatgcgttcg accacgtcgt ccgtctcgcg
      601 caaacctgcc gtatcgacaa tatgcactgg aacgccgtca atcaggatac gttccctgac
      661 cgcgtcgcgc gtcgttccgg caatatcggt aacaatcgcc acttcgtcgc ccgccagcgc
      721 gttcaacagg ctggatttgc cgacattcgg cgcgccgacc aatacgacat tcagaccttc
      781 gcgcaaaatc gcgccctgct gcgcgttggc aagcacatca tccacggcgc ggcgcaagcc
      841 gtccaatttg ccgcgcgcat ccgctgcttc gagaaaatca atgtcttcct cgggaaaatc
      901 cagcgtcgct tcgaccagca tccgcaaggt aatcaaatct tcgaccagac cgtgtatccg
      961 ccgcgaaaaa tcgcccttga gcgagcgcaa cgccagacgc gccgccgaac ggctggatgc
     1021 gtcaatcaaa tccgccacgc cctccgcctg tgccaagtcc agtttgtcgt ttaaaaacgc
     1081 acgcttcgta aactcgcccg gctcggcaag gcgcgcgccc agttccaaac agcggttcag
     1141 cagcatatcc atcaccaccg gcccgccgtg tccctgaagc tcgatgacat cttcgcccgt
     1201 aaaacttgcc ggtgcggcaa aaaacagcaa aagcccgcta tcgattgcct gtccgtccgc
     1261 gtccgtaaaa tcagcatagg ttgcggtacg cggtttaggc gttttcccgc acaaagcttg
     1321 cgccatcggc agcaggtttt tccccgatat gcgtatcacg cccacgccgc cgcgtccggg
     1381 cgcggtagcg actgccgcaa tcgttggaac gttatccgac ataaaacccc cgaaaattca
     1441 aaacagccgc gattatagca aatgccgtct gaagtccgac ggtttggctt tcagacggca
     1501 taaaaccgca aaaatgcttg ataaatccgt ccgcctgacc taatataacc atatggaaaa
     1561 acgaaacaca tacgccttcc tgctcggtat aggttcgctg ttgggcctgt tccatcccgc
     1621 aaaaaccgcc atccgcccca atcccgccga cgatctcaaa aacatcggcg gcgattttca
     1681 acgcgccata gagaaagcgc gcaaatgacc gaaaacgcac aggacaaggc gcggcaggct
     1741 gtcgaaaccg tcgtcaaatc cccggagctt gtcgagcaaa tcctgtccga cgagtacgtg
     1801 caaataatga tagctcggcg tttccattcg ggaccgttgc cgccgtccga cttggcgcaa
     1861 tacaacgaca ttatcagcaa cggggcagac cgcattatgg caatggcgga aaaagaacaa
     1921 gccgtccggc acgaaaccat acggcaagac caaaccttca acaggcgcgg gcaactgtac
     1981 ggcttcatca gcgtcatcct gatactgctt tttgccgtct tcctcgtatg gagcggctac
     2041 cccgcaaccg ccgcctccct tgccggcggc acagtggttg ccttggcggg tgctttcgtg
     2101 attggaagaa gccgagacca aggcaaaaat taatgacaaa tcctagggcg tgcttcatat
     2161 ccgcccgaac gccgaaccgc acatataggc acatcccgcg cgccgcccgg aagcggaagc
     2221 cgcgccctcc caaacaaacc cgaatcccgt cagataagga aaaataatga aaacaaccga
     2281 caaacggaca accgaaacac accgcaaagc cccgaaaacc ggccgcatcc gcttctcgcc
     2341 tgcttactta gccatatgcc tgtcgttcgg catttttccc caagcctggg cgggacacac
     2401 ttatttcggc atcaactacc aatactatcg cgactttgcc gaaaataaag gcaagtttgc
     2461 agtcggggcg aaagatattg aggtttacaa caaaaaaggg gagttggtcg gcaaatcaat
     2521 gacaaaagcc ccgatgattg atttttctgt ggtatcgcgt aacggcgtgg cggcattggt
     2581 gggcgatcaa tatattgtga gcgtggcaca taatgtaggt tatcgcgatg ttgattttgg
     2641 tgcagagggg cgaaatcccg atcaacatcg ttttacttat aaaattgtga aacggaataa
     2701 ttataaaaag gatgaaacgc atccttatga gaaagactac cacaaccccc gtttgcataa
     2761 atttgttacg gaagccgccc cgatcgatat gacttctgat atggacggca acaaatatac
     2821 agataggacg aaatatcccg aacgcgtccg tatcggctcc gggtggcagt tttggcgaaa
     2881 cgatcaagac aaaggagacc aaattgccgg cgcatatcat tacctgacag caggcaatac
     2941 acacaatcaa ggcggagcag ggggcggctg gtcaagcctg agcggcgatg tgcgccaggc
     3001 aggcaattac ggtcccattc ctattgcggg ctcaagcggc gacagcggtt cgcccatgtt
     3061 tatttatgat gcggaaaaac aaaaatggtt gattaacggc gttttgagga caggtaaccc
     3121 ttgggcgggg aaagaaaata cattccaact ggtacgcaag tctttttttg atgaaatcct
     3181 tgaaaaagat ttacgtacat cgttttatag cccatcgggc aatggtgcat acaccattac
     3241 ggacaaaggc gacggcaacg gcattgtcaa acaacaaaca ggaagaccat ctgaagtccg
     3301 aatcggcttg aaagacgaca aattgcctgc cgaaggtaaa gacgatgttt accaatacca
     3361 aggtccaaat atatacctgc ctcgtttgaa taacggtgga aacctgtatt tcggagacca
     3421 aaaaaacggc actgttacct tgtccaccaa catcaaccaa ggcgcgggcg gtttgtattt
     3481 tgaaggtgac tttacggtct cgcctgaaaa taacgaaacg tggcaaggcg cgggcgttca
     3541 tatcagtgaa gacagtaccg ttacttggaa agtcaatggc gtggcaaacg accgcctgtc
     3601 caaaatcggc aaaggcacgc tgcacgttca agccaaaggg gaaaaccaag gctcgatcag
     3661 cgtgggcgac ggtaaagtta ttttagatca acaagcagat gaaaataata aaaaacaagc
     3721 ctttagtgaa atcggcttgg tcagcggcag gggtacggtg caactgaatg ccgataatca
     3781 gttcaacccc gacaaactct atttcggctt tcgcggcgga cgtttggatt tgaacgggca
     3841 ttcgctttcg ttccaccgta ttcaaaatac cgatgaaggg gcgatgattg tcaaccacaa
     3901 tcaagacaaa gaatccaccg ttaccattac aggcaataaa gatattgcta caaccggcaa
     3961 taacaacagc ttggatagca aaaaagaaat tgcctacaac ggttggtttg gcgagaaaga
     4021 tacgaccaaa acgaacgggc ggctcaacct tgtttaccag cccgccgcag aagaccgcac
     4081 cctgctgctt tccggcggaa caaatttaaa cggcaacatc acccaaacaa acggcaaact
     4141 gtttttcagc ggcagaccga caccgcacgc ctacaatcat ttaaacgacc attggtcgca
     4201 aaaagagggc attcctcgcg gggaaatcgt gtgggacaac gactggatca accgcacatt
     4261 taaagcggaa aatttcctga ttaaaggcgg acaggcggtg gtttcccgca atgttgccaa
     4321 agtagaaggc gattggcatt tgagcaatca cgcccaagca gttttcggtg tcgcaccgca
     4381 tcaaagccac acaatctgta cacgttcgga ctggacgggt ctgacaaatt gtgtcgaaaa
     4441 aaccattacc gacgaaaaag tgattgcttc attgaccaat accgacatca gcggcaatgt
     4501 cagccttgcc aatcacgctc atttaaatct cacagggctt gccacactca acggcaatct
     4561 gaccgcaggc ggagacacgc actatgaggt tacgcacaac gccacccaaa acggcaacct
     4621 tagcctcgtg ggcaatgccc aagcaacatt taatcaagcc acattaaacg gcaacacatc
     4681 ggcttcgggc aatgcttcat ttaatctaag cgaccacgcc gcacaaaacg gcgatctgac
     4741 gctttccggc aacgctaagg caaacgtaag ccattccgca ttcaacggca atgtctccct
     4801 agccgataag gcagtattcc attttgaaaa cagccgcctt accggacaaa tcagcggcgg
     4861 caaggatacg gcattacact taaaagacag cgaatggatg ctgccgtcag gcacggaatt
     4921 aggcaattta aaccttgaca acgccaccat tacactcaat tccgcctatc gccacgatgc
     4981 ggcaggggcg caaaccggca gtgcgacaga tgcgccgcgc cgccgttcgc gccgttcgcg
     5041 ccgttcccta ttatccgtta caccgccaac ttcggcagaa tcccgtttca acacgctgac
     5101 ggtaaacggc aaattgaacg gtcagggaac attccgcttt atgtcggaac tcttcggcta
     5161 ccgcagcgac aaattgaagc tggcggaaag ttccgaaggc acttacacct tggcggtcaa
     5221 caataccggc aacgaacccg taagcctcga tcaattgacg gtagtggaag ggaaagacaa
     5281 caaaccgctg tccgaaaacc ttaatttcac cctgcaaaac gaacacgtcg atgccggcgc
     5341 gtggcgttac caactcatcc gcaaagacgg cgagttccgc ctgcataatc cggtcaaaga
     5401 acaagagctt tccgacaaac ttggcaaggc agaagccaaa aaacaggcgg gaaaagacaa
     5461 cgcgcaaagc cttgacgcgc tgattgcggc cgggcgcgat gccgtcgaaa agacagaaag
     5521 cgttgccgaa ccggcccggc aggcaggcgg ggaaaatgtc ggcattatgc aggcggagga
     5581 agagaaaaaa cgggtgcagg cggataaaga cagcgccttg gcgaaacagc gcgaagcgga
     5641 aacccggccg gctaccaccg ccttcccccg cgcccgccgc gcccgccggg atttgccgca
     5701 accccaaccg caaccccaac cccaaccgca gcgcgacctg atcagccgtt ataccaatag
     5761 cggtttgagt gaattttctg ccacgctcaa cagcgttttc gccgtacagg acgaattgga
     5821 ccgcgtgttt gccgaagacc gccgcaacgc cgtttggaca agcggcatcc gggacaccaa
     5881 acactaccgt tcgcaagatt tccgcgccta cagccaacaa accaacctgc gccaaatcgg
     5941 tatgcagaaa aacctcggca gcgggcgcgt cggcatcctg ttttcgcaca accggaccga
     6001 aaacaccttc gacgacggca tcggcaactc ggcacggctt gcccacggcg ccgttttcgg
     6061 gcaatacggc atcggcaggt tcgacatcgg catcagcgcg ggcgcgggtt ttagcagcgg
     6121 cagcctttca gacggcatcg gaagcaaaat ccgccgccgc gtgctgcatt acggcattca
     6181 ggcacgatac cgcgccggtt tcggcggatt cggcatcgaa ccgcacatcg gcgcaacgcg
     6241 ctatttcgtc caaaaagcgg attaccgcta cgaaaacgtc aatatcgcca cccccggcct
     6301 tgcgttcaac cgctaccgcg cgggcattaa ggcagattat tcattcaaac cggcgcaaca
     6361 catttccatc acgccttatt tgagcctgtc ctataccgat gccgcttcgg gcaaagtccg
     6421 aacgcgcgtc aataccgccg tattggctca ggatttcggc aaaacccgca gtgcggaatg
     6481 gggcgtaaac gccgaaatca aaggtttcac gctgtccctc cacgctgccg ccgccaaagg
     6541 cccgcaactg gaagcgcaac acagcgcggg catcaaatta ggctaccgct ggtaacaccg
     6601 gatatgccga aaggggtttg acgatgccac cgtgcgctgt caaacccttt ttctgccgcc
     6661 gccttgtgcc tgctccattg tctgataacc gtcaaattga tttttagccc atgtttggtg
     6721 ggtcggggaa atctatatct tcgtccgtgc cgaaatagtc tgagaccttt gcaaaattcc
     6781 tttccctccc gacagccgaa accccaacac aggttttcag ctgttttcag ct
//
LOCUS       DAXHPV010000112         6654 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.112, whole genome shotgun sequence.
ACCESSION   DAXHPV010000112 DAXHPV010000000
VERSION     DAXHPV010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6654)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6654)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6654
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.112"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(119..1411)
                     /locus_tag="ACFM6C_001533"
     CDS             complement(119..1411)
                     /locus_tag="ACFM6C_001533"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HFC6158972.1"
                     /translation="MAVFPLSAKHRKYALRALAVSIILVSAAYIASTERTERVRPQRV
                     EQNLPPLSWGGSGVQTAYWVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLR
                     HLRADQSVHVLVGGDGGAREVQFFTDEDGERNLVALEKKGGIWRRSASEADMKVLPTL
                     RSVVVKTSARGSLARAEVPVEIRESLSGIFAGRFSLDGLKEGDAVRLIYDSLYFHGQQ
                     VAAGDILAAEVVKGGTRHQAFYYRSDKEGGGGGNYYDEDGRVLQEKGGFNIEPLVYTR
                     ISSPFGYRMHPILHTWRLHTGIDYAAPQGTPVRASADGVITFKGRKGGYGNAVMIRHA
                     NGVETLYAHLSAFSQAQGNVRGGEVIGFVGSTGRSTGPHLHYEARINGQPVNPVSVAL
                     PTPELTQADKAAFAAQKQKADALLARLRGIPVTVSQSD"
     gene            1489..2457
                     /locus_tag="ACFM6C_001534"
     CDS             1489..2457
                     /locus_tag="ACFM6C_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158973.1"
                     /translation="MKLTLAIPSLNLDKDETRIPLCLHAFNKILQYGSLHRQSCTASA
                     FYARYLWCGRLAERAAQSLNMPSETVALATPVWQKMGMHQANVLTAEYLDVGTDEAER
                     LCRDLSAFYGDIPWRFVPVLPELWLVSLPRAYRWGAKPVLDLGGLLGADDQPDGEDAL
                     EWLRVQTEIQMWLAAHPVNHNRKKRGLPELNGLWLWDSLHGSSQGGTLFADTVWSRFH
                     PDRRALPDNFRAYEETAAHLPDTHHILFMDDLRLTALTGDRERYAAILQQWEERWFAP
                     LYEAVRIGKIKRLDIATDGQHGGTLTFKPADRWKFWRGAKTFDGIW"
     gene            complement(2658..4124)
                     /locus_tag="ACFM6C_001535"
     CDS             complement(2658..4124)
                     /locus_tag="ACFM6C_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="surface lipoprotein assembly modifier"
                     /protein_id="HFC6158974.1"
                     /translation="MVIFYFCGKTFMPARNRWMLLLPLLASAAYAEETPREPDLRSRP
                     EFRLHEAEVKPIDREKVPGQVREKGKVLQIDGETLLKNPELLSRAMYSAVVSNNIAGI
                     RVILPIYLQQAQQDKMLALYAQGILAQADGRVKEAISHYRELIAAQPDAPAVRMRLAA
                     ALFENRQNEAAADQFDRLKAENLPPQLMEQVELYRKALRERDAWKVNGGFSVTREHNI
                     NQAPKRQQYGKWTFPKQVDGTAVNYRLGAEKKWSLKNGWYTTAGGDVSGRVYPGNKKF
                     NDMTAGVSGGIGFADRRKDAGLAVFHERRTYGNDAYSYTNGARLYFNRWQTPKWQTLS
                     SAEWGRLKNTRRARSDNTHLQISNSLVFYRNARQYWMGGLDFYRERNPADRGDNFNRY
                     GLRFAWGQEWGGSGLSSLLRLGAAKRHYEKPGFFSGFKGERRRDKELNTSLSLWHRAL
                     HFKGITPRLTLSHRETRSNDVFNEYEKNRAFVEFNKTF"
     gene            complement(4366..6489)
                     /locus_tag="ACFM6C_001536"
                     /pseudo
     CDS             complement(4366..6489)
                     /locus_tag="ACFM6C_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_180374912.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
BASE COUNT         1416 a         1981 c         1688 g         1569 t
ORIGIN      
        1 gtacaggaat gacagcagtg cttccttggc ttaattttat tttaatcaac tgcaaatgcc
       61 gtctgaaaac cggtttgcag attttcagac ggcattgttt tcgtcgccgg ttcaaacttc
      121 aatccgattg cgacacggta accggtatgc cgcgcaagcg cgcaagcagc gcgtccgcct
      181 tctgtttctg cgcggcaaac gccgccttgt ccgcctgcgt caattcgggt gtcggcaatg
      241 cgactgaaac aggattgacg ggctgcccgt tgatgcgtgc ctcgtaatgc aggtgcggcc
      301 cggtcgaacg cccggtcgaa ccgacaaaac cgatgacctc gccgccgcgc acattgcctt
      361 gtgcctgcga aaacgcgctc aagtgcgcgt acagcgtttc cacgccgttg gcgtggcgta
      421 tcatcaccgc gttgccgtat ccgcccttcc ggcctttaaa ggtaatcacg ccgtcggcgg
      481 aagccctgac cggcgttccc tgcggtgcgg cataatcgat gcccgtgtgc agccgccaag
      541 tgtgcaggat ggggtgcatg cggtagccga acggcgaaga aatgcgcgta tagaccagcg
      601 gctcgatgtt gaagccgcct ttttcctgca acaccctgcc gtcttcatcg taataattgc
      661 cgccccctcc gccttccttg tccgaacggt aatagaacgc ctgatgcctt gtgccgccct
      721 taacgacttc agccgccaaa atatcgcccg ccgccacctg ctgcccgtgg aaatacaggc
      781 tgtcgtaaat caggcgcacg gcatcgcctt ccttcaaacc gtcaaggctg aagcggccgg
      841 cgaaaatccc gcttaaggat tcgcggattt cgacgggcac ttccgcccgc gccagcgaac
      901 cgcgcgccga cgttttgacc acgaccgaac gcagcgtcgg caaaaccttc atatccgcct
      961 cagaagccga ccgccgccat atgccgcctt tcttttccaa agcgaccaga ttgcgctcgc
     1021 cgtcttcgtc ggtaaaaaac tgcacttcgc gcgcgccgcc gtcgccgccg accaaaacat
     1081 gaaccgactg gtcagcacgc aaatgccgca aatcggcttc gccgccatat ttttccgtga
     1141 ttcgggcaat ctcgtcccgc gccatacccg aacgcgccag cacgtccgcc agcgagtcgc
     1201 ccggctgcac cgcctcctgc acccaatatg ccgtctgaac accgctgccg ccccaagaca
     1261 gcggcggcag attttgttcc acgcgctgcg gtctgacgcg ctccgtcctc tctgtcgaag
     1321 caatgtatgc cgctgacacc aaaataatcg aaacggcaag cgcgcgcagc gcgtatttcc
     1381 gatgttttgc cgaaagtggg aagacagcca tattgttcct ttttgacggc gtttgcgccg
     1441 aatcctctat aatgttgcgc ctgacctgca tttctgaaac gtcaaacgat gaaactcacc
     1501 ctcgccattc cctcgctcaa tttggataaa gacgaaaccc gaatacctct ctgcctgcac
     1561 gccttcaaca aaatcctgca atacggctcg ctgcaccgcc aaagctgcac ggcttcggca
     1621 ttttacgcgc gttatttgtg gtgcggcaga ctggcggaac gcgcggcgca aagcctgaat
     1681 atgccgtctg aaaccgtcgc gctcgccacg cccgtctggc aaaagatggg gatgcatcag
     1741 gcaaatgtgc tgacggcgga atatttggat gtcggtacgg atgaagcgga acggctctgc
     1801 cgcgatctgt cggcgtttta cggcgatatt ccgtggcgtt tcgttcccgt cctgcccgaa
     1861 ttatggctgg tttcccttcc ccgcgcgtac cgctggggcg cgaagcccgt tttggacttg
     1921 ggcggactgt tgggtgcgga cgatcaaccg gacggggaag acgcgttgga atggctgcgc
     1981 gtccaaaccg aaatccaaat gtggctggcg gcgcaccccg tcaaccataa ccgcaagaaa
     2041 cgcgggctgc ccgagttgaa cggcttatgg ctttgggaca gtctgcacgg aagcagtcaa
     2101 ggcggcacgc ttttcgccga tacggtttgg agccgtttcc accccgaccg ccgcgcattg
     2161 cccgacaact tccgcgccta tgaagaaacg gcggcacacc tgcccgacac gcaccatatc
     2221 ctgtttatgg acgatttgcg cctgaccgcc ctgacagggg acagggagcg gtatgcggca
     2281 atattgcagc agtgggaaga acgctggttc gcaccgcttt acgaagccgt ccgcatcggc
     2341 aaaatcaaac ggctggacat cgccacggac ggacaacacg gcggtacgct gaccttcaaa
     2401 cccgccgaca ggtggaaatt ttggcgcggc gcgaaaacct ttgacggaat ctggtgaacc
     2461 cgcccgccgc aaccgcgaca atgccgtctg aagcccgaat cgggtttcag acggcatttt
     2521 acctcgcatc gccgttatgc cggaaaaacc ggaatgcgtt tccgcacacg cggcggcacg
     2581 caaagcaccg cccgaaagcc gccgatgccc gccgtgatac cgccgccggc agggtttcct
     2641 ccgaaaagga acagcaatca gaacgtttta ttaaactcga caaacgcccg atttttctcg
     2701 tattcgttga acacatcgtt actccgcgtt tcgcggtgcg acaacgtcag gcgcggcgtg
     2761 atgcctttga aatgcaatgc ccggtgccaa aggctcaagg atgtgttcaa ttctttatcc
     2821 ctgcgccttt cccctttaaa accgctgaaa aagccgggtt tttcataatg ccgtttcgcc
     2881 gcgccgaggc gcaacagcga agacaggccg ctgccgcccc attcctgccc ccaggcaaag
     2941 cgcaggccgt aacggttgaa attgtcgccc cggtcggcgg ggttgcgctc gcggtaaaaa
     3001 tccaaaccgc ccatccaata ttggcgcgca ttccggtaaa acaccagcga attggaaatt
     3061 tgcaaatggg tattgtcgga acgcgcccgg cgcgtattct tcaaacgccc ccactccgcc
     3121 gaagacaacg tttgccattt cggggtttgc caacggttga aataaaggcg tgcgccgttg
     3181 gtgtaagaat aagcgtcgtt gccgtaggtg cggcgttcgt ggaacactgc cagcccggca
     3241 tctttgcgcc ggtcggcaaa accgatgccg ccggaaacgc ctgccgtcat atcgttgaat
     3301 ttcttattcc ccggataaac cctgccggac acgtcgccgc ccgccgtcgt gtaccagccg
     3361 tttttcagcg accatttttt ctccgcgccg agccggtaat tgaccgccgt gccgtccacc
     3421 tgtttcggga aagtccattt gccgtactgc tgccgtttcg gggcttggtt gatattgtgt
     3481 tcgcgggtga cgctgaagcc gccatttacc ttccacgcat cgcgttcgcg caatgccttg
     3541 cggtacagct cgacctgctc catcagctgc ggcggcaggt tttccgcctt caggcggtcg
     3601 aactggtctg ccgccgcctc gttctgcctg ttttcaaaca atgccgccgc caaacgcata
     3661 cggacggcgg gcgcgtcggg ttgggcggca atcaattccc ggtaatggga aatcgcctcc
     3721 ttcaccctac cgtctgcctg cgccaaaatc ccttgtgcat aaagtgccaa catcttatcc
     3781 tgctgcgcct gttgtaggta aattggcaaa ataacgcgga taccggcaat attgtttgaa
     3841 accactgcgg aatacatcgc gcgggacaac aattcgggat ttttcagcag ggtttctccg
     3901 tcaatctgca aaacttttcc tttttcccgc acctgccccg gtaccttctc cctgtcgatt
     3961 ggtttgacct ccgcttcatg aagcctgaac tcgggacggc ttctcaaatc cggttcgcgc
     4021 ggtgtttctt cggcatatgc cgcgcttgcc aataaaggca gcagcagcat ccatctgttt
     4081 cgtgcaggca taaatgtctt cccacaaaaa taaaaaataa ccattatcaa tcggcggatt
     4141 gtatcagttt tttatgccgc tgttccaaac cctgccgccc gatgccgcga caatgccgtc
     4201 tgaagccaga atcgggtttc aaacggcggc aaaaaaccgg cggttttccg ccggtttcat
     4261 catgatgccc cgcccttcgg ggcggcaggg ttcggattgg tttgcggggc ggcgcgcggg
     4321 gccgtgccgg tgtgccgcct gtgcgtcaaa acatttcccg acgcatcaaa acagccattt
     4381 gagcgacaat gcggcttctt tgtcgccgtc cgtccttttg ccgtatccga tgcgtgcgga
     4441 catatggcct ttccaaccgg cttcaatgcc gaaccgccct tcgagcgccg tcctgcctgc
     4501 cagcgtctgt ttttcgccgt ccatttccac gccgaaagat tttgacctgt gcaaaacatt
     4561 aaaagcggca aaaggctgaa gattgacacc attacgcaaa gcaaaacggg tttttgcccg
     4621 aatgccggcg cggctttgcc actgaccgct gccgagcagt ccgaccgccg tcccctcgct
     4681 gtcggtaaag ccgccgttta cgcccaagta ggtaaactga gcctgcggtt gcaggtaaaa
     4741 ccgcacatta ttgccttttc cgacaacgcc ttccgccaca agcgcgttgt agccgccttc
     4801 gacagaagcc gtccaacctt tggttttgta gcgttccgca cggttttcat cattgatgcg
     4861 atgtttgaaa cgttggtatt gcaaccagcc gtccaaatac gcacccgttt gtttatcgcg
     4921 caactgatgc cacgcagcat aaacaccccc gccataacca tgcaaataac tgcctgccgc
     4981 accgcctttg ccgttgactg atgcgtgctg gccggccctg ccgcccatca cgccgattgc
     5041 cagtcggctg ccttcatttt gccgtacaaa cacctcgccg ccgatttgca cgcctttgcg
     5101 ccgcccgtcc gcagccgcgc cgccccgtat attttgatgc gaccgaccgc cgatgaagcg
     5161 cagccacaat ttttgacggg acggatcggc ggcatacacg tcgtcgcccc tgtcggcggc
     5221 acgcagccca aacaaagtat ttgccgcata agcctgttgg gcatataaaa ccgcttccgc
     5281 ctcggggata gccaaacgct gcacgcccaa gcaaaatccg ccttcgcatt gcttgagcaa
     5341 taattcgtac agtccctgcc ggtaattttg tttaaacgca aacgaattag agtctgcctt
     5401 ttccgccgca atcagtttgc gcccgtcgag cgttttcaga ttttccggcc ggcgttccaa
     5461 aaccacgccg gattttccgc tgactttttc ttcaaaggtc agggcgggtt cgtccgactc
     5521 ccgcacgtcg tagccgaaca ggaaatccgc accgccctga tacgctttat ggacggtcag
     5581 tttttcatct ttcgtgttca ggcggatgcg ggcattatcg gaagtttcca gcatatggat
     5641 gtcggaatgg cggcgcggtt cccaaaggga atctttcagc gtcatcttgg tcagttccaa
     5701 cacctgtccg gcgacgtggg atttgttttc gattttgacg tgtaattttt tattgaagat
     5761 gttgttgaga ctagtctgtg atgtattact atgaggagtg agtacggaat cttctaccaa
     5821 tttattaatt aaatcgggca tcgtctgttt gagcgtacta aattttgttc caaactgtgc
     5881 tatatacgcc tcctcagtcc gttttttatt ttctgcccaa gcttccggtc ttgttttgta
     5941 taaatcctgt aattgacttt taaccgcctg ctttaaatca gccccatact tctctgtaat
     6001 atattttttg acaacgggca tattatcgac ggcgaggatg ccgctattgt aatttttacc
     6061 ttggatattg atttcgtcat acccatattc ggatgaattt tgatcggttt taccgctgga
     6121 aaaataatgg gaagtgccgg gtttcggctt gtctgaaaat gaaaaatcgg catcgtcgcc
     6181 gattttggta gaacgagtat ttgaaccaag ctgagctctg aacataccga agcaatcaaa
     6241 agatatgctg cacgggccgc gccaaacgtg ggaatttctg tcttccgccg cttctaaaat
     6301 aaatttgttt ttaatctcgg cttctttgac gggatcgtac gcatccgaac ctcaaacata
     6361 tggcgtgcaa aacagcgata aaacagataa tgttaataga ttaacccgac cgcttgcttg
     6421 cttgcttgct tgcttgcttg cttgcttgct tgcttgcttg cttgcttgct tgcttgcttt
     6481 cagtgtcatg agaaattttc ctttgtcaag tgttaaaatt ataatgatta tatactacat
     6541 tatactacat cgcaatgaaa aatcaggaaa agcaaaaaac cctccgccgt cattcccgcg
     6601 aaagcgggaa tctagaattt taatgcggca agaatttatc aagaaaaacc gaag
//
LOCUS       DAXHPV010000113         6634 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.113, whole genome shotgun sequence.
ACCESSION   DAXHPV010000113 DAXHPV010000000
VERSION     DAXHPV010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6634)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6634)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6634
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.113"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            133..1500
                     /locus_tag="ACFM6C_001537"
     CDS             133..1500
                     /locus_tag="ACFM6C_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HFC6158975.1"
                     /translation="MPDLHTEFSRLLPADEIAELSPTLLKDQRNRFTSAPDIILQPRS
                     VESVQTIMRFCYEHRIPVTPQGGNTGLCGAAVSENGVLLNLSKLNRIRSINLSDNCIT
                     VEAGSVLQTVQQAAEASNRLFPLSLASEGSCQIGGNIACNAGGLNVLRYGTMRDLVIG
                     LEVVLPNGELVSHLHPLHKNTTGYDLRHLFIGSEGTLGIITAATLKLFARPSDKATAW
                     VGIPDIESAVRLLTETQAHFAERLCSFELIGRFAAELSSEFSKFPLPTHSEWHILLEL
                     TDSLPDSNLDDRLVEFLYKKGFTDSVLAQSEQERIHMWALRENISASQRKLGTSIKHD
                     IAIPIGRVADFVRRCAKDLEQNFKGIQIVCFGHLGDGSLHYNTFLPEILSNEVYRYEN
                     DINDAVYRNVLACNGTIAAEHGIGIIKKQWLDKVRTPAEIALMKSIKQHLDPYNIMNP
                     GKLLP"
     gene            1541..2041
                     /locus_tag="ACFM6C_001538"
     CDS             1541..2041
                     /locus_tag="ACFM6C_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfbM family protein"
                     /protein_id="HFC6158976.1"
                     /translation="MTATYQLVDNEKLALLKNTDTEWQELFEELEDLEDEAAVCLDID
                     KMWDVLHFVLTGTSAENPLKGNLLSESIVGTAPISDDDGYAAYIESAQIHEIISALEG
                     FDIKSAMEHFSMQVCKEHHIYPDIWDYEDEIYDIKEEITDYFYKIGNFYKTARHSNSN
                     VLVSIY"
     gene            complement(2469..2915)
                     /gene="smpB"
                     /locus_tag="ACFM6C_001539"
     CDS             complement(2469..2915)
                     /gene="smpB"
                     /locus_tag="ACFM6C_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HFC6158977.1"
                     /translation="MAIANNKKAFHDFFIEDRIEAGLVLEGWEVKAIRAARVQLKESY
                     IYWKKEAFYLVGCHITALPTASTHIKPDAVRPRKLLLNQSEINKLIGKTERAGYTIVP
                     LDLHFSRGKIKMEIGLAKGKKQHDKRQSMKEADWKREKQRLIKHTR"
     gene            complement(2970..3980)
                     /gene="waaF"
                     /locus_tag="ACFM6C_001540"
     CDS             complement(2970..3980)
                     /gene="waaF"
                     /locus_tag="ACFM6C_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HFC6158978.1"
                     /translation="MSIKILIISPSWIGDCVMTQPLFRRLKELHPGCTIDVFAPKWSM
                     AVFERMPEVNEILENPFGHGALELKRRWRVGRDLGRRGYDQVIVLPGSLKSAVIALAT
                     GIGKRTGYVGESRYFLLNDIRRLDKERLPLMVDRYTALAHQSQEDFDGHSGFPEFSID
                     ERRREISVETFGLNLGKPVLAFCPGAEFGPAKRWPAKHFAELGKHYLAAGWQVWLFGS
                     QKDDEIAEEINCLSDGMCVNLCGKTDLSQAMDLLSLADTVVCNDSGLMHLAAALGRKV
                     VAVYGSSSPTHTPPLSDRAKIVSLHLECSPCFKRECPLGHTDCLNRLYPEKIVQAVEE
                     AV"
     gene            complement(4111..4186)
                     /locus_tag="ACFM6C_001541"
     tRNA            complement(4111..4186)
                     /locus_tag="ACFM6C_001541"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4151..4153),aa:Asn,seq:gtt)
     gene            complement(4377..5129)
                     /locus_tag="ACFM6C_001542"
     CDS             complement(4377..5129)
                     /locus_tag="ACFM6C_001542"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HFC6158979.1"
                     /translation="MITLPSLNNLPSKWDEIRHCLETRVFECGVMPHPNLTECEAGQF
                     DRDFWDNIGCAPEEYVRIRRAIRLLEARYPDSLNELVCAAIATPLGEMLAVFGNKGLC
                     LLEFVGQKHLEQEIAAVQKALRGRFVFREDERTQLLRQELDLYFKGRLKTFATPLEQI
                     GTEFQKQAWDALLAIPYGETRSYKEQAQRLGNPKAVRAVAAANGQNKVSILIPCHRVI
                     GSDGKLTGYAGGLNRKQFLLALERGEVQTALF"
     gene            5440..5964
                     /locus_tag="ACFM6C_001543"
     CDS             5440..5964
                     /locus_tag="ACFM6C_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
                     /protein_id="HFC6158980.1"
                     /translation="MQTRILSAVLLAFSTTAFAGGAFTLQFDNPSEDGGFTQNQFLSA
                     PYGFGCSGDNASPALSWKNPPAGTKSFVLTVYDKDAPTGLGWMHWVVADIPADVRRRN
                     ATSLQLSRCASIADDQSAAISAVISLRICRIRLTPSYTAKPMPSCCNHANMPQSAASA
                     ALCGTSSSASTAAA"
     gene            5925..6104
                     /locus_tag="ACFM6C_001544"
     CDS             5925..6104
                     /locus_tag="ACFM6C_001544"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158981.1"
                     /translation="MRHFFIRQYRSRIIKRRAHTPGIRQLYRIAHCLSRPVLCGEPFY
                     GFLFESNPLRLIEAV"
     gene            6118..6270
                     /locus_tag="ACFM6C_001545"
     CDS             6118..6270
                     /locus_tag="ACFM6C_001545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158982.1"
                     /translation="MTSNVCPPANATASPAAILNSRLAHRSFLLPRRTISTADSYTAT
                     LRYKAV"
BASE COUNT         1726 a         1935 c         1480 g         1493 t
ORIGIN      
        1 ctgctgccga agctgcaaaa taagcatttt ccgcttgcaa aaaagcagga tacgttcagt
       61 atcctgcttt tttgattttt cagacggcat cagattccct tcctcaatct tctccctacc
      121 cttccgacaa acatgcctga ccttcatacc gaattttccc gactcctgcc ggcagatgaa
      181 attgccgaac tttctccgac gcttttaaaa gaccagcgca accgctttac gtctgcacca
      241 gacatcattt tgcagccgcg cagcgttgaa agcgtgcaaa ccattatgcg tttttgttac
      301 gaacaccgca ttccggttac gccgcaaggc ggcaataccg gtttgtgcgg cgcggcagta
      361 tcggaaaacg gcgtattgct gaacctttcc aaactcaacc gcatccgcag catcaatttg
      421 tcagacaact gcataaccgt cgaagcaggt tccgtactcc aaaccgtcca acaggcagcc
      481 gaagcctcaa acaggctgtt tccactcagt ctcgccagcg aaggctcgtg ccaaatcggc
      541 ggcaacatcg cctgcaatgc cggaggtttg aacgtattgc gttacggcac gatgcgcgac
      601 ctggttatcg gtttggaagt cgtcctcccc aacggcgagc tggtttccca tctccatccc
      661 ctgcataaaa acaccaccgg ctacgacctg cgccatctgt ttatcggcag cgaaggcaca
      721 ctgggcatca tcactgccgc cacgctcaag ctttttgccc gtccctcgga caaggcaacg
      781 gcatgggtcg gcatacccga catcgaatcc gccgtccgcc tgctgaccga aacccaagct
      841 cactttgccg aacgcctatg cagttttgag ctgatcggcc gttttgccgc cgagttgtct
      901 tccgaattca gcaaattccc cctgccgaca cattcagaat ggcatatttt acttgagttg
      961 accgactcat tacccgacag caatcttgat gatcggcttg tcgaatttct ttataaaaaa
     1021 ggatttaccg acagcgtatt ggcacaaagc gaacaagaac gtatccatat gtgggcattg
     1081 cgcgaaaaca tctccgcatc gcaacgcaaa ctgggcacca gcatcaaaca cgatattgcc
     1141 attcctatcg gacgcgttgc cgactttgtc cgccggtgcg ccaaagattt ggaacagaat
     1201 tttaaaggca tacaaatcgt ctgcttcgga catcttggcg acggcagcct gcactacaat
     1261 actttcctgc ccgaaatcct cagcaatgaa gtctatcgtt acgaaaacga catcaacgac
     1321 gcagtttatc gcaacgttct tgcctgcaac ggcacgattg ccgccgaaca cggcataggt
     1381 atcatcaaaa aacagtggct ggacaaagta cgcacgcctg ccgaaatcgc cctgatgaaa
     1441 agcatcaaac aacaccttga tccatataac attatgaatc cgggcaaact gcttccgtaa
     1501 ataactgatt caaaatgaaa ttataggaaa tatcatggga atgacagcaa cctatcaact
     1561 ggtcgataat gaaaaactgg ctttgcttaa aaacaccgat accgaatggc aagaattgtt
     1621 tgaagaactg gaagatttgg aggatgaggc tgccgtctgc ctcgacatcg ataaaatgtg
     1681 ggatgttttg cattttgtac tgaccggaac aagtgcagaa aatcccttaa agggcaatct
     1741 gttatccgaa tcaatcgtcg gaacggcacc catttcggac gacgacggat acgccgctta
     1801 tatcgaatcc gcccaaatcc atgaaatcat ctcagctttg gaaggcttcg acataaaaag
     1861 cgcaatggag catttcagta tgcaggtgtg caaagagcat catatctacc ccgacatttg
     1921 ggattatgaa gatgaaattt atgatataaa agaagaaatt accgactact tttacaaaat
     1981 cggcaatttt tacaaaaccg cccggcattc aaatagcaat gtactggtca gcatttacta
     2041 aatatatttc aaacatcacg gaaactttaa tgaagacaaa gtacggaatc gcactcaagg
     2101 aaacctaggt atttcaacct gggagaccat catgagtaaa agttacagaa aacacccctt
     2161 ttcccctata accacggcag tcagcgaaaa acaggacaaa cgccttgtca accggaaact
     2221 acggagaata gcgcgcgaat gtctgaaaca aggaaaagaa ccaccccacc atatcagggc
     2281 agtcagcaac gtttacgatt tcgccaaaga cgggcatttc cgtttttccg cttcccgtca
     2341 tccgcatctt ttacgcaaat agaaaacagg gcaaccgccc tgtttttccg tttcgtattt
     2401 caacaccatt gttcaaacaa ccgtcagacg gcattgttca aacgccgtct gaaaccgcat
     2461 cccccccatc agcgcgtatg cttaatcaac cgctgtttct cgcgtttcca atccgcctct
     2521 ttcatactct gacgtttgtc gtgctgtttc ttaccttttg ccaaaccgat ttccatcttg
     2581 atttttccgc gcgaaaaatg caaatccagc ggcacgatgg tgtagccggc acgttcggtt
     2641 ttgccgatta atttgttgat ttccgactgg ttcaacaaga gcttgcgcgg acgtacggca
     2701 tctggtttaa tgtgtgtcga ggctgtgggc aaagccgtaa tatggcagcc gaccagataa
     2761 aacgcttctt ttttccaata gatataactc tctttaagct gtacgcgcgc ggcgcggatt
     2821 gctttgactt cccagccttc caagaccaaa ccggcttcaa tccggtcttc aatgaaaaaa
     2881 tcgtgaaatg cttttttatt gttcgcaata gccataaaca tcctatcaat atccgccgtc
     2941 agacggcata aacccgaaaa cagaacccat cataccgcct cttcaaccgc ctgcacaatc
     3001 ttctcgggat acagcctgtt gaggcagtcg gtatgcccca gcggacattc ccgcttaaaa
     3061 cagggcgaac attccaagtg caggctgacg attttcgccc tgtcgctcaa aggcggcgta
     3121 tgcgtcgggc tggaagaacc gtaaaccgcc accaccttcc tgcccaatgc cgccgccaag
     3181 tgcatcagcc cgctgtcgtt gcacacgacc gtgtccgcca acgacaacaa atccattgcc
     3241 tgcgacaaat cggttttgcc gcacaaattg acacacatac cgtctgaaag gcagttgatt
     3301 tcctcggcga tttcatcatc tttttgcgaa ccgaacaacc aaacctgcca acccgccgcc
     3361 agataatgtt tgcccaactc ggcaaaatgc tttgccggcc aacgctttgc cggcccgaat
     3421 tccgcacccg gacaaaaagc cagaacaggc tttccaagat tcaaaccgaa agtttcgaca
     3481 gaaatttccc gccgccgttc atcaatggaa aactcgggga atcccgaatg cccgtcaaaa
     3541 tcttcctgac tctgatgcgc gagagccgta tatcgatcca ccatcaaagg cagacgttcc
     3601 ttatccagcc tgcgtatatc gttcaacaga aaataacggc tttcaccgac ataacccgtc
     3661 cttttaccga tacctgtcgc cagcgcgatg actgccgact tcaaagaacc cggcaacaca
     3721 ataacctgat cgtatccgcg ccgccccaaa tccctgccga cccgccagcg gcgtttcaac
     3781 tccaacgcac cgtgtccgaa cggattctca agaatttcat tcacttccgg catacgctcg
     3841 aacaccgcca tcgaccactt cggcgcgaac acatcaatcg tgcaaccggg gtgaagttcc
     3901 ttcaaacggc ggaacaaggg ctgggtcatc acgcagtcgc ctatccaact gggagaaata
     3961 atcaggattt tgatggacat aacaagaaac cgaaatcaga caggcggaat tttaccgcga
     4021 aaccgttgga aaacctatct cgccgcattc cgaacgccgg acgtgcaaat atgaaaaagc
     4081 ccgaacattc aagttcgggc ttcaaaattc tggctccccg acctgggctc gaaccaggga
     4141 cctgcggatt aacagtccgt cgctctaccg actgagctat cggggaatgg ggcgtattat
     4201 agcgtccgga aaaaatgtgt caatccttaa ttttggaaaa atgggcgaca aaacgacaag
     4261 catatgaatc agaaagacat taagaccgat gccttaaaag gattgccgtt gtatgaattt
     4321 ccacagccgt catcacacca tatttaagcc cgatgagccg ttctgccctc ccccgcttaa
     4381 aacaatgccg tctgaacttc gccgcgttcc aaagccagta aaaactgttt gcggttcaac
     4441 ccgcccgcgt agccggtcag tttgccgtcg ctgccgatga cgcggtggca gggaatcagg
     4501 atagatacct tgttctgccc gttggcggcg gcaacggcgc ggacggcttt ggggttgccc
     4561 aaacgctgcg cctgctcctt gtagctgcgc gtttcgccgt aaggaatcgc caagagcgcg
     4621 tcccatgcct gcttttgaaa ctcggtgcca atctgctcca aaggcgtggc aaaggttttc
     4681 agacgaccct tgaagtataa gtccaattcc tgccgcaaaa gttgcgtccg ctcatcctcc
     4741 cgaaacacaa accgtccgcg caaggctttt tggacggcgg caatttcctg ttccaaatgc
     4801 ttctgtccga caaactccag cagacacaat cccttatttc cgaacaccgc cagcatctcg
     4861 cccaaaggcg tggcaatggc ggcacacacc agctcgttca aactgtcagg ataacgcgct
     4921 tccaacaaac ggatggcgcg gcggatgcgg acatattctt caggcgcgca gccgatattg
     4981 tcccaaaaat cccgatcgaa ctgcccggct tcgcattccg tcaaattggg atgcggcata
     5041 acgccgcact caaaaacccg ggtttcgagg caatggcgga tttcatccca ttttgacggc
     5101 aggttgttta aggaaggcag ggtaatcatt cgtttgctcc gtatctctat catggatttg
     5161 gcggcaaaat ccccgatttc cgccattccc gcacgccgat gcaggaacgg gctatgacgt
     5221 aaatcttgag ggttgggttg cggcaatgcc taaatatgcg atatttctaa agcctcaggg
     5281 aaaggaatta aagacttcag acgacctgca aagggtcgtc tgaaaccacg atttttgcat
     5341 ttgcgcattt cggcacatca tccaaccgtt tcggcacatt cctgccgccg ttgacagcct
     5401 ataatgaatc cacttattca tcaagcaaag gaatcatcta tgcaaacccg catcctctcc
     5461 gccgtactgc tggctttttc aaccactgcc tttgccgggg gcgcattcac gctgcaattc
     5521 gacaacccgt ccgaagacgg cggcttcacg caaaaccagt ttttgagcgc gccttacggc
     5581 ttcggctgtt caggcgacaa tgcttcgccc gcgctgtcgt ggaaaaatcc gcccgccggg
     5641 acaaaaagtt tcgtcctgac cgtttacgat aaagacgcgc cgaccggact gggctggatg
     5701 cactgggtgg tcgccgacat tcccgccgat gtccgccgcc gcaacgcgac ctcgttgcaa
     5761 ttaagccgct gcgccagcat cgccgacgac cagtccgcag ccatatcggc ggtaatcagt
     5821 ttgcggattt gccgcatcag gttgacgcct tcgtacacgg caaaaccgat gccgtcatgc
     5881 tgcaaccacg ccaacatgcc gcaaagcgcg gcctccgcag cattgtgcgg cacttcttca
     5941 tccgccagta ccgcagccgc ataatcaaac gccgcgccca tacgcccgga atacggcagc
     6001 tttaccgcat cgcacactgc ctgagccgtc ccgtattgtg cggcgaacct ttctacggtt
     6061 tcctgttcga aagcaatcca ttgcgcctga tagaggccgt ctgaatcggg aatattgatg
     6121 acgtcaaacg tctgcccgcc tgccaacgca accgcctcac ccgccgcaat cctcaattcg
     6181 cgcctcgccc accgcagctt cttgcttccg cgccgcacga taagcacagc cgattcatat
     6241 accgccacgc tgcggtacaa ggcggtatga tgttgcacga tgccgcctaa agcacccaat
     6301 cgttcgcgtg tatgaaagta atttgacggc actattatct ccaacacgca gggccgcaca
     6361 taaggcgcag ccctgtttac cctgatttgg aaggggttac ttcccaaaaa taaaccaaaa
     6421 tcccactgcc ccgaatggcc gggtttcaac catattccgt cggtgtgcct gcaacttgac
     6481 tccctcccct gtgggggagg gttggggaga gggtaaaacg gggcagatac agacaatatt
     6541 tccgttaccg ccccgatgcc ctctccctag ccctctccca cgaaagaggg aatggattgc
     6601 cgtttaaata aaaaaatcta cataaaaatc aatg
//
LOCUS       DAXHPV010000114         6390 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.114, whole genome shotgun sequence.
ACCESSION   DAXHPV010000114 DAXHPV010000000
VERSION     DAXHPV010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6390
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.114"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(84..3161)
                     /locus_tag="ACFM6C_001546"
     CDS             complement(84..3161)
                     /locus_tag="ACFM6C_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HFC6158983.1"
                     /translation="MNQNHFSLKILTVMLLSAYGGSFADGVVPVSDGNTVSLDTVNVR
                     GSHALSGKTEKTRSYTIDRMSTATGMRIAGKDTPQSVSVITRSRLDDKAVHTLEEAMK
                     NTTGVNVVRDSGLQTRFLSRGFYIDQIGEDGITVNVAGRSGYTAKIDVSPSTDLAVYD
                     HIEVVRGATGLTQSNSEPGGTVNLIRKRPTASFKHTGELTADHRGSRRAVLDVSGSLN
                     KANTLRGRLVGAEEYKKSFKDRVWGRKHMVYGIAEADAGDSSVLTLGGMYQKSREVPD
                     FSGIILSCENQKTAPFSSTPACNRPLQLPRNTYLGEDWSRLSADKYNLFSGFKHVFDN
                     GWQLNAEVSYTKNESDAKVGQFFLKNEHAAGLSDEDAVGFLTEKNEVIPFEPKDKALE
                     KLKAYRDETAKEYRERKDDFVKNRFDNTAFEQYRSRRAAERKAGFDECMSAPFALDFI
                     CQGSWGDLGVDADKSEFVDKALAKEGIFNNAAQRFPNSLYDSSFNRKATANRRYSYMP
                     LRHTKDDRQWGIKLDLTGTYGLFGREHDFFVGYAYGDEKIRSEYLEIYERRHRVRPNT
                     GATHGVYAGSCQEEPDGDLSSPLVRGHKEPDWQAYDEKGNRTVYAEECRNAKKIKTEP
                     KLDAEGKQVYYYDEYSGSRTPVYVDVYELDEKGNKIQETNPDGSPVFTGFSGTVPVWK
                     TVKVADDHVPALYNYAKYLNTNKTHSLTASTRFNVTGRLHLLGGLHYTRYETSQTKDM
                     PVRYGQPASDFQTASSIKADQDHYTAKMQGHKLMPYAGITYDLTPQQSIYGSYTKIFK
                     QQDNVDVSAKTVLPPLVGTNYEVGWKGAFLQGRLNASFALFYLEQKNRTVVDFGYVPR
                     AGGKQGSFQTVAKPIGKVVSRGAEFELSGELNEDWKVSYNKSRYKNAAEVNAERLAKN
                     TGADPYNFSNFTPVHIFRFGTSFHIPNTGLTVGGGVSAQSGTSSLYNIRQGGYGLIDG
                     FVRYELGKHAKLSLIGTNLNGRTYFENNYNRTRGANNFYGEPRTVSMKLDWQF"
     gene            3435..4214
                     /locus_tag="ACFM6C_001547"
     CDS             3435..4214
                     /locus_tag="ACFM6C_001547"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004324 - ferredoxin-NADP+ reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP reductase"
                     /protein_id="HFC6158984.1"
                     /translation="MAASPEAKFTEEKILWVKHHTPKLITFAISRPESYRFKAGQFSR
                     LGFYEGEGFIWRAYSIVSAEYADTLEYFAVLIQDGPMSARFAKMQQGDTILLDKNATG
                     FLLPERFPDGKDLVMLCTGSGIAPFLSILEQPEIRQRFDTVNLIHSVSFPEELIFNDR
                     LAALSEHPLVGEYGHSFHFVPVTTRAANPSGLSGKRIPELLKNSSIEQALHTKFTPES
                     TRFMICGNPEMVKDTFQTLLDMGYAMHRNRIPGQIMMENGF"
     gene            4227..4367
                     /locus_tag="ACFM6C_001548"
     CDS             4227..4367
                     /locus_tag="ACFM6C_001548"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158985.1"
                     /translation="MSDAFGWTVKPTRHENRVGKNAVWKNSDGIFGHITCKRQHIPTQ
                     TD"
     gene            complement(4425..5810)
                     /locus_tag="ACFM6C_001549"
     CDS             complement(4425..5810)
                     /locus_tag="ACFM6C_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PolC-type DNA polymerase III"
                     /protein_id="HFC6158986.1"
                     /translation="MIVASRWPLLEKAFLRFGMPVAVVDLESTGGNLYEDRVTEVALV
                     KFEQGRVVRHEWLVNPQKPIPQFVAGLTGISDGMVADAPVFAEIAGELFSVLKGCVLV
                     AHNSRFDYTFLKHEFHRAGIGFSSPALCSVQLSRCLYPQFYKHSLDSIIERLGIVVED
                     RHRAMADVSALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLREQLYGLPDG
                     MGVLACFDGGGKVNYIGTFERVYSEVSALLDSGKAPFDWCNTEEVRFFPALGSLHAYK
                     IKAELVGRYHSGCYVSAKNLLKTFTTVRFEKGSDGMLNAKTAALKNGVTDNPPTGLFA
                     NKKAARRALSLWAETYGLCPAAAGILPDGYAEDEPCPVYVSGRCDKACGRSDEQVLAF
                     AHKLPVLDWGKMHEVEITETDPLTGEKVVLHGMGGALEMDDGFWYFDKDLLDAFKAKF
                     KTDRKNIKEIG"
     gene            5928..6004
                     /locus_tag="ACFM6C_001550"
     tRNA            5928..6004
                     /locus_tag="ACFM6C_001550"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5962..5964,aa:Arg,seq:acg)
     gene            6022..6096
                     /locus_tag="ACFM6C_001551"
     tRNA            6022..6096
                     /locus_tag="ACFM6C_001551"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6055..6057,aa:Glu,seq:ttc)
BASE COUNT         1627 a         1810 c         1347 g         1606 t
ORIGIN      
        1 cgccccgata gacctgcctc cataaaaatg ccgtctgaaa cataccctgt ttcagacggc
       61 atccgcaaaa ctacggtttt caattaaaac tgccaatcca gtttcatgct gacagtgcgc
      121 ggctctccgt agaagttgtt tgcgccgcgc gtacggttgt agttgttctc aaaataagtg
      181 cgtccgttta agttcgtacc gatgaggctc aatttggcgt gtttgcccaa ttcgtaacgg
      241 acgaaaccgt ctatcagccc gtagccgccc tgacggatgt tgtacaggct gcttgtgccg
      301 ctttgtgcgg acacgccgcc gccgacggtc agccccgtat tcggtatatg gaagctcgtt
      361 ccgaaacgga atatgtgcac gggtgtgaaa ttgctgaagt tgtacgggtc tgcgcctgtg
      421 tttttggcga ggcgttcggc gttgacttcg gcggcgtttt tgtagcggct cttgttgtag
      481 gagactttcc aatcttcgtt caactcaccc gacaactcga attccgcacc cctgctgacc
      541 actttgccta tcggtttggc aacggtttgg aacgacccct gcttgccgcc tgctctggga
      601 acatagccaa aatcgacgac cgtgcggttt ttctgttcga ggtaaaacaa tgcgaacgaa
      661 gcattcagcc gtccttgcaa gaacgcgcct ttccagccta cctcatagtt tgtgccgacc
      721 aaaggcggta aaacggtttt ggcactgaca tcgacattat cctgctgttt gaagattttg
      781 gtataacttc cgtaaatact ctgttgcggt gtcaaatcat aggtaatgcc tgcatagggc
      841 atcaatttat gaccttgcat cttggccgta taatggtcct gatccgcctt aatgctcgat
      901 gccgtctgaa aatcgcttgc cggctgccca tagcggacag gcatatcttt ggtttgcgag
      961 gtttcatagc gcgtgtagtg cagcccgccc aaaaggtgca gtcggccggt tacgttgaaa
     1021 cgcgtgctgg cagtcagcga atgggttttg ttggtgttga ggtatttggc gtagttatac
     1081 agcgcaggaa catggtcatc ggccacttta acagttttcc aaaccggcac cgtaccggaa
     1141 aaaccggtaa agacaggcga gccgtcggga ttggtctcct gaatcttgtt gcctttttcg
     1201 tccagctcat atacatcgac atataccggt gtccggctgc cgctgtattc gtcatagtaa
     1261 tacacctgct tgccttcggc atcgagcttg ggctcggttt ttattttctt ggcattcctg
     1321 cattcttcgg cataaacggt acggttgcct ttttcatcgt acgcctgcca atcgggttct
     1381 ttatgccccc tgaccaaagg agaagacaaa tcaccgtccg gctcctcctg acaacttccc
     1441 gcatacacgc cgtgcgttgc ccctgtattc ggacgtactc tgtggcggcg ttcgtagatt
     1501 tccagatatt cggaacgtat cttttcatcg ccgtaggcat agccgacaaa gaaatcatgc
     1561 tcccgcccga acagcccata tgtgccggtc aggtcaagtt taattcccca ttggcggtcg
     1621 tctttggtat gccgcaacgg catataactg tatcgtcggt tggcggtagc cttccgatta
     1681 aaggaagagt catacaggct gtttggaaaa cgttgtgccg cattattaaa gatgccttcc
     1741 ttcgcaaggg ctttatcgac aaattccgac ttgtcggcat caacacccag atccccccaa
     1801 gaaccttgac agataaagtc cagcgcaaaa ggggcactca tacactcgtc aaaaccggct
     1861 ttgcgttctg cggcacggcg gctgcgatac tgttcgaaag cagtattatc gaaacggttt
     1921 ttaacaaaat cgtctttgcg ctcacggtat tccttggcgg tttcgtcacg atatgctttc
     1981 agtttctcca atgccttatc tttcggctcg aacgggatga cttcgttttt ttcggtcaaa
     2041 aagcctaccg catcctcatc tgacaaaccc gccgcatgtt cgtttttcag aaaaaactgc
     2101 cccaccttcg catcggattc attcttggta taagacactt cggcattgag ctgccaaccg
     2161 ttgtcaaaca catgtttgaa acctgagaaa aggttgtatt tgtcagcact caaccgcgac
     2221 caatcctccc ccaaataagt gttgcgcggc agttgcaaag gccggttgca ggcaggcgtt
     2281 gaactgaacg gggcagtttt ctgattttca caggacaaaa taatgcccga aaaatcagga
     2341 acctccctac tcttctgata catgccgccc aaagtaagca cactgctgtc gcccgcatcg
     2401 gcttcggcaa tgccgtaaac catatgtttc ctgccccaaa cgcggtcttt aaacgatttt
     2461 ttatactctt ccgcacccac caaccttccg cgtaaggtat tcgccttatt caggctgcct
     2521 gaaacatcca acactgcacg ccggctgccg cgatggtcgg cggtcagctc tccggtatgt
     2581 ttgaaagaag cggtaggtcg cttacggatc aaattgacgg ttccacccgg ctctgaattg
     2641 gattgggtca accccgttgc accccgtaca acttcaatat ggtcataaac cgccaaatcg
     2701 gtactcggag acacgtcgat tttcgccgta tatcccgaac ggcctgcaac attgacggta
     2761 ataccgtctt caccaatctg atcaatatag aaaccgcgtg acaaaaaccg cgtctgcaag
     2821 cctgaatcgc gcacaacgtt gacacccgtc gtgtttttca ttgcctcttc aagcgtatgc
     2881 accgccttat cgtcaaggcg gctgcgcgtg atgacgctga ccgactgcgg cgtatccttg
     2941 cccgcaatcc tcatacctgt ggcggtggac atccgatcta tcgtataaga acgggtcttc
     3001 tcggtcttgc ccgacagagc atgagagccg cgtacattga ccgtatccag actgacggta
     3061 ttgccgtctg aaacaggcac aacaccgtct gcaaaagaac caccgtaagc cgataacagc
     3121 ataacggtca gaattttaag tgaaaaatga ttttgattca tagagacctc tgtaatatgc
     3181 aagtgtgcaa atcgtccaaa ggccctcaca actgttttga ttttttatat taattgaaaa
     3241 aaagtaattc tcaattaaat ttatagatgg gattgtattc ccattttgac aaaaaacaaa
     3301 ctgctcctta ccgtttattt caaaaaacga taatattgta ttgaaaaata tccgaattta
     3361 aatacagatc gtcaatgcgg aaaaaaacac ccaaattggc tataatcccg acaaacacac
     3421 tcaaggacaa caacatggca gcctcgcccg aagcaaaatt cactgaagaa aagattttgt
     3481 gggtcaaaca ccacacgccg aaactcatca ctttcgccat cagccgtccc gaatcctacc
     3541 gttttaaagc cggacagttc tcccgactcg gtttctacga aggggaaggc tttatttggc
     3601 gtgcctactc catcgtttcc gcagaatatg cagacacgct cgaatatttt gccgtactca
     3661 tccaagacgg ccccatgtcg gcccgtttcg ccaaaatgca acagggcgac accatcctgc
     3721 tcgataaaaa tgccaccggc ttcctcctgc ccgaacgctt ccccgacggc aaggatttgg
     3781 tgatgctctg caccggctcc ggcatcgccc ccttcctttc cattctcgaa caacctgaaa
     3841 tccgacagcg tttcgatacc gtcaacctga tacattccgt atcttttccc gaagaattga
     3901 ttttcaacga ccggctcgcc gcattgtccg aacatcccct ggtaggcgaa tacggacact
     3961 cgttccattt cgtccctgtt accacccgtg ccgccaaccc ctcgggctta agcggaaaac
     4021 gcattccgga actcttaaaa aacagcagca tcgaacaggc gctgcatacc aagttcaccc
     4081 cggaatccac acggtttatg atttgcggca acccggaaat ggtcaaagat actttccaaa
     4141 cgctgcttga catgggttac gccatgcacc gcaaccgcat tcccggtcaa atcatgatgg
     4201 aaaacggctt ctaaaaacca ccctgcttgt ccgatgcctt cggatggacg gtcaaaccga
     4261 cacggcacga aaaccgcgtc ggcaaaaatg ccgtctggaa aaattcagac ggcatcttcg
     4321 gacacattac ctgcaaacgg caacacattc caacccaaac cgattaggca atcaatacga
     4381 acggctgttt acatacttac cggctttcat caaccggtat cgatttaacc gatttcctta
     4441 atatttttcc tgtccgtttt aaacttcgcc ttaaacgcat ccagtaaatc tttatcgaaa
     4501 taccaaaacc cgtcatccat ttccaatgcg ccgcccattc catgcagaac aactttttcc
     4561 cccgttaaag gatcggtttc ggtaatttcc acctcatgca tttttcccca atccaaaaca
     4621 ggcaacttgt gtgcaaacgc caaaacctgt tcgtcagaac ggccacacgc cttatcgcat
     4681 cggcctgaaa catatacggg acaaggctca tcctctgcat aaccgtccgg aaggataccg
     4741 gctgcggcag gacacaatcc gtatgtttcc gcccacaacg acaaagcccg tctcgctgcc
     4801 tttttattgg caaataatcc ggtaggcgga ttatccgtca caccgttttt caaagccgct
     4861 gttttcgcat tcaacatgcc gtctgaacct ttttcaaacc tgacggtcgt aaatgtttta
     4921 agcagatttt tggcagatac ataacaaccc gaatgataac gtccgaccaa ttccgcttta
     4981 atcttatatg catgcaggct gcccaatgca ggaaaaaaac ggacttcctc cgtattgcac
     5041 caatcaaacg gggcttttcc ggaatccaat aaagccgaaa cctcgctata tacccgttca
     5101 aacgtaccga tgtaatttac ttttcctccg ccgtcgaaac aggccagcac ccccataccg
     5161 tcaggcaaac cgtacaactg ttccctcaac cgttcgggca gcgcggcagg cagcggtttc
     5221 ggattcatca aacggaaaca ctgcctgatc catgcctcaa ccccgtgttc cgacagactg
     5281 tattccaaat aatcacacaa tgccgataca tccgccatcg cacgatgcct gtcttccaca
     5341 acaatcccca acctttcgat gatactgtcc aggctgtgct tgtaaaattg cggatacaga
     5401 caccgggaca gctgcacact gcacaaagca ggcgatgaaa atccgatacc cgcacgatga
     5461 aactcatgct ttaaaaacgt atagtcgaaa cggctgttat gtgcaaccag cacacaaccc
     5521 ttcaataccg aaaacaactc gccggcaatc tctgcaaaaa caggcgcatc ggcaaccatg
     5581 ccgtctgaaa tccccgtcag ccccgccaca aactgcggaa tcggtttttg aggattaacc
     5641 agccactcat gcctcaccac ccttccctgc tcaaacttga ccaaagccac ttcggttacc
     5701 ctgtcttcat acagattgcc gcccgtcgat tccaaatcga ccacggcaac cggcattcca
     5761 aaccgtaaaa acgccttttc cagcaagggc caacgggaag caacaatcat tttattctct
     5821 ttaaattcaa acaacaaacc gatattttac acttttaagg catttcatcc aacaaaacaa
     5881 ttgacagaat ccgatgatta ccctaaaatt caaatctttc ttgcagtgca cccgtagctc
     5941 agttggatag agtatctggc tacgaaccag agggtcgggc gttcgaatcg ctccgggtgc
     6001 gccagtaaga aaatacaata tgcgcccatc gtctagcggt taggacatcg ccctttcacg
     6061 gcggtaaccg gggttcgatt ccccgtgggc gtgccaaatt ccaaatcccc gagattatcc
     6121 ctcggggatt ttttattgcc tcggcaactc gttaccatat ctttacctac ccccttcatc
     6181 agaatctcag acgtaatcga atcatattca aacctttgcc gtgcaaaccg atatcccata
     6241 accggatgcg gtgtccgtcc aacattttac ccgattgaaa cgcctgatat attgcacccc
     6301 atcaacgtgg cattactttt cttaacaatc ccctttgaca gcaactgact agggcttttt
     6361 tatgccatca tcaaatttat agtggattaa
//
LOCUS       DAXHPV010000115         6322 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.115, whole genome shotgun sequence.
ACCESSION   DAXHPV010000115 DAXHPV010000000
VERSION     DAXHPV010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6322
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.115"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..96)
                     /locus_tag="ACFM6C_001552"
     CDS             complement(<1..96)
                     /locus_tag="ACFM6C_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_060537127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6158987.1"
                     /translation="MRKSRLSRYKQNKLVELFVAGVTARTAAELVG"
     gene            163..465
                     /locus_tag="ACFM6C_001553"
     CDS             163..465
                     /locus_tag="ACFM6C_001553"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158988.1"
                     /translation="MKDFDEVCEKWEKSFKENGKEIEYNQKYSRIYGEVRGAGFNGDI
                     GEKLHRCAVMEWAENETVKLAQKWEQEQKKQQIQQKKETEKSPKHKASRDDWEMER"
     gene            complement(547..2634)
                     /locus_tag="ACFM6C_001554"
     CDS             complement(547..2634)
                     /locus_tag="ACFM6C_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003700725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase domain-containing ABC transporter"
                     /protein_id="HFC6158989.1"
                     /translation="MDYLSRLSFGFNKKLPVILQTEVAECGLACLTSILSYYGFHTDL
                     RTLRQKYTLSLKGANLADIMRFGNEMNLTPRALRLELDELSNLQLPCILHWNLNHFVV
                     LCSISKDSIVIMDPAVGMRKIKMDEVSQKFTGIALELFPNTHFEEKKETKKIKILSLL
                     RGISGLKRSLIQMLILAISLEVFALVSPFFMQWVIDHVIVTADKNLLLTLTLGFGLLA
                     ILQQLISLLQAWVGMHLSTTLNLQWKANIFKRLLDLPNDYFSKRHLGDVISRFGSIDH
                     IQETLTSTFFVLVLNSLMAVFTFVLMTIYSTQLSLIVLLTLVLYILIRWLAYYPLRNA
                     TEENIVHEAKQNSYFMETIRGIQSVKLFDKHYQRHGTWMSLFVNTVNTKLTTDKLSAL
                     FEFSNKLLFSMENIIIIYLGASAILDGSFTVGVLMAFLAYKGQFESRTASLVDQYIQI
                     KMLGLHAERLADITLNETETEIIKYNHIPKLDNEQLVLKVENVSFRYADNEPYLFENI
                     NLEFKDNEAVVLTGQSGRGKSTLLNILTGSLKPETGTVSINGHDIYQVSPSFIRGLSG
                     IVRQDDVLFAGSIGENISFFDESPNMELIEQCAKMAQIHDDILKMPMGYETLIGDMGN
                     ILSGGQKQRVILARALYKRPKILFLDEASSHLDVENEQKINHNLKSLGIMKIMVAHRQ
                     ETIQSADKILNLG"
     gene            complement(2637..3902)
                     /locus_tag="ACFM6C_001555"
     CDS             complement(2637..3902)
                     /locus_tag="ACFM6C_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HFC6158990.1"
                     /translation="MSHLFRKEVFVAQQNKWTGQVILTRPFSFLFLTFCAFLIALCII
                     IFLIFGSYTNKTTVEGQLLPTMGVVRVYSSDIGTITHKFVENGNFVKAGEPLFKLSTS
                     RFGEKGNVQAKLAAEANLKKTLALQELERLKRIHQNEQKNVHNNIHRLNNQLENIKQQ
                     ITGQNRQIRLVEKTLNKNKFLASQGAVSQQDKMTAESHLLEQRSRLESLKREQNNAIR
                     ELDEQKITLSSLPERHKTELSQLNRAITEMNQEILDFDLKSEQTIRASKSGYISTINV
                     DIGQQVEPSKLLLSIVPEQTELVANLYIPSKAVGFIKPKDKVVLRYQAYPYQKFGHAT
                     GEIISVARTALGKQELSGLGIIFTNPTLLNEPAYLVKVKLEKQTIKAYGENKPLQIGM
                     ILEADILHERKKLYEWVLDPLYSISGKIN"
     gene            complement(3947..4084)
                     /locus_tag="ACFM6C_001556"
     CDS             complement(3947..4084)
                     /locus_tag="ACFM6C_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158991.1"
                     /translation="MNTETIYATVFCILAATISGLLVKFNVIKIETSINSKFMLLGIS
                     I"
     gene            complement(5124..5360)
                     /locus_tag="ACFM6C_001557"
     CDS             complement(5124..5360)
                     /locus_tag="ACFM6C_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin transporter"
                     /protein_id="HFC6158992.1"
                     /translation="MKELHTSELVEVSGGKFHISAQGGGNLGKKDMVAVGKIGASYSP
                     NNSGVEFSVSKQFGYVQGLGVQFSKPTFGISKKW"
BASE COUNT         2021 a         1123 c         1091 g         2087 t
ORIGIN      
        1 gcctactaac tctgctgccg ttcttgcagt tacacctgcg acaaatagct caacgagttt
       61 attttgttta taccggctta gacgactttt tctcataggg ataattctaa cttaatttga
      121 atttccctag ttatctagga cagcccctta aaaaatatcc ctttgaaaga ttttgatgaa
      181 gtttgtgaaa agtgggagaa atcctttaaa gaaaatggaa aagaaattga atataatcaa
      241 aaatattcaa gaatttatgg tgaagttcgt ggagctggct ttaatggcga tatcggagaa
      301 aagctacatc gttgtgccgt gatggaatgg gctgaaaatg agaccgtgaa attagcccaa
      361 aaatgggaac aagagcagaa aaaacaacaa attcaacaga aaaaggaaac tgaaaaatcg
      421 ccaaaacaca aagccagtcg tgatgattgg gaaatggaac gttaaaccgc tattttcatg
      481 tattctatta aattatttga aaaaagactt cactttttgt taaagaaaaa tgaagtcttg
      541 ttctgttcaa cctaaattca gaattttatc tgccgattga attgtttctt ggcggtgtgc
      601 aaccattatt ttcataatac caagactttt taggttatgg ttaatttttt gttcattttc
      661 tacatctaaa tggctacttg cttcgtctaa aaatagaatt ttgggtcgtt tatacaatgc
      721 acgagccaag ataactctct gcttttgtcc acctgataag atatttccca tatcgccaat
      781 caaggtctca tagcccattg gcattttaag tatatcgtca tgtatttgtg ccatttttgc
      841 acattgttca atgagctcca tatttgggct ttcatcaaaa aatgaaatat tttccccaat
      901 agaacctgca aaaaggacat catcttggcg aacaatcccg ctcaatcccc taataaagga
      961 tggagaaact tgatatatat catgcccatt aatactaact gtaccagttt caggttttag
     1021 gctacctgtt aaaatgttta acaaagtgga cttcccccga ccagattgtc ctgttaaaac
     1081 aactgcttca ttatctttaa attccaaatt aatgttttca aaaagatatg gctcattatc
     1141 agcatatctg aatgagacgt tttcaacttt aagaaccagt tgttcattat ctaatttagg
     1201 tatatgatta tacttaataa tttcagtttc tgtttcattt aaagtaatgt cagccaaacg
     1261 ttcagcatga agccctaaca ttttgatttg gatgtattgg tcaacgagag aagctgttct
     1321 gctttcaaat tgccctttat aagccaaaaa agccatcaga acaccgactg taaatgaacc
     1381 atctaaaatt gcgcttgcac caagataaat tatgataata ttttccatgc taaacaacag
     1441 tttatttgaa aattcaaata aagcagagag tttatctgtt gtcagcttgg tattgactgt
     1501 attcacaaat aggctcatcc aagtgccatg tctttgataa tgtttatcaa ataatttaac
     1561 tgattggata ccacgaatgg tttccatgaa atatgagttt tgtttggctt catgaacaat
     1621 attttcttct gttgcatttc ttaatgggta atatgcaagc caacgaatta gtatgtacaa
     1681 aacaagtgtt aaaagaacaa tcagcgataa ttgagtgctg taaattgtca ttaacacgaa
     1741 agtaaaaaca gccattaagc tatttaaaac taaaacaaaa aaagtagaag ttagtgtttc
     1801 ttggatatga tctattgaac caaatcttga aatcacatct cctaaatgtc gtttactgaa
     1861 atagtcatta ggtaagtcaa gtaacctttt aaatatattg gctttccatt gtaaattaag
     1921 agttgtagat aggtgcatac ctacccatgc ttgtaacagg ctaattaact gttgcaggat
     1981 agccagtaaa ccaaatccca aagtaagggt cagtaataaa tttttatcag cagttacaat
     2041 gacatggtct attacccatt gcataaagaa tggactaacc aatgcaaaga cttccaaaga
     2101 aatagctaat ataagcattt gaattaaaga acgttttaag cctgaaatcc cccttaatag
     2161 agataatatt ttgattttct ttgtttcttt tttctcttca aaatgggtat tggggaataa
     2221 ttctagggca atccctgtga atttttgtga aacttcgtcc attttgattt ttcgcatacc
     2281 gacagcaggg tccataatga cgatactgtc tttggaaatg gaacaaagta caacaaaatg
     2341 gtttaagttc caatggagaa tgcagggtag ttgtaaattt gacagctcat ctaactctaa
     2401 acgcaaagct cgtggcgtta aattcatttc attgccaaat ctcatgatgt ctgcaagatt
     2461 tgcgcccttt aatgacaggg tgtatttttg gcgtaacgtt cttaaatcag tgtgaaagcc
     2521 ataataggac aagatggatg tcaggcatgc taaaccacat tcagcaactt ctgtttgcag
     2581 aatgacaggt agctttttgt taaatccaaa ggacagtctt gataaataat ccatttttaa
     2641 ttgatttttc ctgaaatgct gtaaagtggg tcaagtaccc attcgtacaa tttttttcgt
     2701 tcatggagaa tatctgcttc taaaatcatg ccaatttgaa gcggcttgtt ttctccgtat
     2761 gctttaatcg tttgtttttc caatttaact ttcacaagat aggcaggttc atttaataag
     2821 gttgggttag tgaaaatgat acctaaacct gatagctctt gtttaccgag agcagttctg
     2881 gcaactgaaa taatttctcc tgtggcatgt ccaaattttt ggtaagggta cgcttggtaa
     2941 cgtaaaacaa ctttatcttt cggtttaata aaaccaacag ctttactggg tatgtaaaga
     3001 ttggcgacca attcagtttg ttcagggaca atgcttaaca gcaatttaga cggttcaact
     3061 tgttgcccta tatcaacatt aattgttgaa atataacctg atttactagc tcgtatggtt
     3121 tgttcggatt tcaaatcaaa atccaaaatt tcttggttca tttccgtaat cgcacggttg
     3181 agttggctca attcggtttt atggcgttca ggcaggctgc ttaatgtgat tttctgttca
     3241 tcaagttccc tgattgcatt attttgttca cgttttaggc tctccaaacg tgagcgttgt
     3301 tccaataaat ggctttcggc ggtcatctta tcttgttggg atactgcgcc ttgactggct
     3361 aaaaacttgt tcttgttaag ggttttttcc actaaacgaa tttgacgatt ttgccctgta
     3421 atttgctgtt taatattctc taattgattg tttaaacgat gaatgttgtt atgaacattt
     3481 ttttgctcat tttgatgaat gcgctttaaa cgttccaatt cttgtaatgc caaagttttt
     3541 ttaaggttgg cttctgctgc caatttggct tgtacgtttc ctttttcgcc aaaacgcgat
     3601 gtggaaagtt tgaacaatgg ttcgccagct ttgacaaagt taccattttc aacaaattta
     3661 tgcgtaatcg tgccgatatc ggaagagtaa acacgaacca cccccatagt tggaagtaat
     3721 tgaccttcaa cggttgtttt attggtatag ctaccaaaaa tcaaaaagat aatgatacac
     3781 agagcaatga gaaaagcgca aaaagtcaga aataaaaaag agaatggacg ggtcaagata
     3841 acctgacctg tccacttatt ttgttgggct acaaagactt cttttcggaa taagtgggac
     3901 atttattatt atttcttaaa aaaaatggat agaaaaacac caataattaa atacttatgc
     3961 ctaataacat gaatttgcta ttgattgatg tttctatttt aattacatta aatttaacca
     4021 ataatccaga aatggttgca gctaaaatgc aaaagacagt ggcgtaaatg gtttcagtat
     4081 tcataatttt tctctttcaa aattgttcaa tctaaataga aaaaggtaac ttcaatacat
     4141 attgctgtaa ctgaaattac cttttcctta atgatgtaat tatcttatgg cttcatcatg
     4201 ccacgaccga tattgtatcc gccagcagca gagaaaatac cagctccaat tgcgccaacc
     4261 cagcctactg gtcctgtcca cttgttccgt tgagctacaa agacttctgg tctgaaaaat
     4321 gagtgattgt tagacatgtg tacttattta tgtttctttg attgggataa atttgtaaaa
     4381 acaaaaaaaa gcaagttgtt attatagaag aacttaaaat gcttaacata ctcattgagg
     4441 tttgtaccac ataatgagat acgagataat ttgttgggag taaaatcaaa aaaaagatta
     4501 aatatttaaa ataatcacta tattttttca ttatttgttc ctttttgtat ttaagttctt
     4561 atgaaaaact agggtatttt gaatagaaaa tatcaaaata ccctagtttt attaaggaat
     4621 attaccacca acaagtgctt ccatattgta cagcaccagt gattgcacca ccaatagctc
     4681 cgaatttcgc acctggaata gcaccaatac cacctgcaaa tgaaccaaca attgccccac
     4741 cagctgctcc acctaatgca ctaccaatgg tattttttga gaaatcacgc cagttacaag
     4801 cagcaccaga aacttgttaa atttcattca aagtcaaaac ttgcataata ttcacctttg
     4861 ttaagtgtgg ttgagaaaaa agtaaatttt catcgttact cattatttgc aatcatgcat
     4921 atactgtaac caagcactat attcagttgg atcatagttt ttcctactgg gttgtctgat
     4981 atgactattg gcactattgg cacaattggg attagcaact ttattgtgag tacctaatgg
     5041 attgatattt cctgtaaagt ggctattgca tgcgcttaat gagcatagat ttattaatgt
     5101 cagaaaggat aaaacaaaaa atcttaccat tttttactaa taccaaaagt aggtttcgaa
     5161 aactgtacac caagaccttg tacatatcca aattgcttgc taacagaaaa ctctactcca
     5221 ctattgttag gggaatagga agcaccaatt ttaccaacag caaccatatc ttttttacct
     5281 aggttgccgc caccctgtgc agagatatgg aatttgccac ctgacacttc aactaattca
     5341 gaggtgtgta actctttcat gattttctcc tgtaaagaag tatggttgga aatgtaaatc
     5401 agaattaacc tttcttaagt ttaatttaat actttttttt gcaagtattt tattttaaat
     5461 taaatcaata ttttaaaaat atttacttgt atactgaaaa agaaactcct aatggtggag
     5521 tggggctttt gtttaagtaa gcattgaaaa aatttaaatt tcccattatg attaacttaa
     5581 tgcaaaagct ttttcaggac gtacaaacca gcgaacgggc gttctgatgt gggcaggttg
     5641 gttgtcgcta accaatttca gtagctcaat cgtcagattg gtatccgacc ctatcaagct
     5701 aaggagaggc tgcggctact acacaaagca cctgaattat tgggtgcttt tgtcttttta
     5761 tggcattgta ccaatttgtg taccacgagg gcttgttcgc ccaaacgcgg taacaactga
     5821 atacacactt tccccctcaa cttctttgcg ttctaaaacg actgtcccaa tccgagaata
     5881 gacaatcata ggacgatgat tgccccttac atcactaaat tcactaaaaa tttttgcgcc
     5941 tgattgaaaa atcatttcca cataaaaggg ttacacctgt ttcatcgtgg cttaatccaa
     6001 accgcgttaa atctgctttg tgttctgcca aaatgtgaat cacaccaaag ccgtgattaa
     6061 cctttttgtg ttcgccgtgt tttaaaacaa tttgacctgc cgggaagtct gctctattgt
     6121 tcggacaata gggggaatat accaattact ttaactacat cattttttga catttttctt
     6181 gcctttcaat ttaaaatcca aaatcatact gccataattt agcaatccaa aaaaatttag
     6241 gcagcagtaa tggtttcgta ttttagaaaa cgaaacttgg tttggtgttt tgaagcattt
     6301 cagtacacaa acatggaatt tt
//
LOCUS       DAXHPV010000116         6316 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.116, whole genome shotgun sequence.
ACCESSION   DAXHPV010000116 DAXHPV010000000
VERSION     DAXHPV010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6316
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.116"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            112..486
                     /locus_tag="ACFM6C_001558"
     CDS             112..486
                     /locus_tag="ACFM6C_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158993.1"
                     /translation="MSAVGRERNFAKVSYRELVERQLAVRHADLELGLSRAREQEPFV
                     IHVSDLLDKAGIEYAVRMDKDFQTTFNLEYPNTNYDTFKRVVRQMISAYYCVCNDGDE
                     LEISSNRPDGYAVRIVFGDVPV"
     gene            498..764
                     /locus_tag="ACFM6C_001559"
     CDS             498..764
                     /locus_tag="ACFM6C_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158994.1"
                     /translation="MDFEFGFRTLWPIATAAFWFWVNGISGRLKEADKRIDDLKEELH
                     AVKLSYHTKQDAQADRKNIAASLERIENKLEKVNEKLDRKADKS"
     gene            761..958
                     /locus_tag="ACFM6C_001560"
     CDS             761..958
                     /locus_tag="ACFM6C_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158995.1"
                     /translation="MKDPILEALARIENKTDQTLKNQKEMQAEIAQIRQDTKRTALTF
                     GALGGGVITVGWELLKAKMGL"
     gene            961..1467
                     /locus_tag="ACFM6C_001561"
     CDS             961..1467
                     /locus_tag="ACFM6C_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HFC6158996.1"
                     /translation="MAHPQEIREKLRRLYVSGEQTLETAALMCEIPQATARAWKRADK
                     EKGDDWDKMRAAYTLAGGGIEDLSRAMLAGFMVQYNSTMTMLQDSSTEDLPPSDRAKL
                     LASLADAFTKTVSANARVMPETSKLATALELIEFLMAFVQEKHPKHLPAFVEVLEPFG
                     AEVEKKFG"
     gene            complement(1464..1976)
                     /locus_tag="ACFM6C_001562"
     CDS             complement(1464..1976)
                     /locus_tag="ACFM6C_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6158997.1"
                     /translation="MTGFISNAFIGLKEAGSLLKGFNQLKTEAEVAQKTIELNQIIAG
                     IQTDLFEAQSSYTAAISRIDELEKELVAVKNWSTEKQRYQLYELALGSFVYRLKAEMA
                     NSEPIHDICPQCYEQGVKSILQFNGYEGAFHKYSCSRCQTIILGERLKSDVEVFSVGG
                     SRYGRLTDGY"
     gene            1988..3610
                     /gene="terL"
                     /locus_tag="ACFM6C_001563"
     CDS             1988..3610
                     /gene="terL"
                     /locus_tag="ACFM6C_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HFC6158998.1"
                     /translation="MKTKEFLKSLAELAASLRQVIEAEVDGFDASPKAITARRAKVFD
                     PVGGYEYFVNTYFPHYIRSPEKSELHAFLFSRLPEIIRSPKGENEAVGAPRGEGKSTQ
                     VTQLFTLWCIVTGQKHYAVIVMDSIDQAYPMLEAIKAELEFNPRLKTDFPEVCGQGRV
                     WQAGTIVTANDVKVQVAGSGKKLRGLRHGPYRPDLTVLDDIENDEQVRNPEQRDKLNA
                     WLTKTVLPLGGVGQKYDVIYIGTILHYDSVLNRTLNNPFWRGVKFKAMKRWPDRMDLW
                     DRWEELFRNDGETVAEAFYQANKDEMERGAVTSWAARGVLALMKIRARDGHATFDSEY
                     QNDPVSGEDAPFAKSMKFWNDLPSDLVYFGALDPSLGKAGASRDPSAIVIGGYQRSMG
                     RLYVVEAQIKKRLPDLIIEDVICLHRQYRCKLWFVETVQFQEFLKDELVKRSAARGIP
                     VPARAVKPVSDKLLRIETLQPHMANGLILLNESQQTLIQQFRHFPKADHDDGPDAVHM
                     LWSGAVANCVPIEWQSPTDNDFDDEIKSKWSR"
     gene            3610..5178
                     /locus_tag="ACFM6C_001564"
     CDS             3610..5178
                     /locus_tag="ACFM6C_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 domain-containing protein"
                     /protein_id="HFC6158999.1"
                     /translation="MAKKDNKTKIQKPEAALQTDAAQITATGRVIAEHPSNFITPQKM
                     RALFEDAESGDIRAQHELFADIEERDSDIAANMGTRKRALLTLNWRVAPPRNATPEEE
                     KLSDQAYEMMDSLPTLEDLIMDLMDAVGHGFSALEVEWVFSDGLYLPRNFIHRPQSWF
                     KWDKDNGLLLRTRENPEGEALWPLGWVVHTQKSRSVQQARNGLFRTLSWLYMFKHYAV
                     HDFAEFLELYGMPIRIGKYGAGATKEEKNTLLRAVAEIGHNAAGIMPEGMEIELHNAA
                     SGTMATSNPFLQMADWCEKSAARLILGQTLTSGADGKSSTNALGNIHNEVRRDLLVSD
                     AKQVAQTITSQIIGPFLQINYPNADPNRVPKFEFDTREPKDIAVFADAIPKLVDVGVQ
                     IPESWVRDKLVIPDVQEGEAVLVRQVPDNPINRTALAALSAHTVPSKATGRHQEILDG
                     ALDDALVEPDFNSQLNPMVRQAVAALNACNSYEEADAALNALYPNLDNAKLRTYMQQA
                     LFISDILGQDHARA"
     gene            5165..6148
                     /locus_tag="ACFM6C_001565"
     CDS             5165..6148
                     /locus_tag="ACFM6C_001565"
                     /inference="COORDINATES: protein motif:HMM:NF016148.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor head protein"
                     /protein_id="HFC6159000.1"
                     /translation="MPAPDLGFALSLPPKKAIEWLESKKVTAESYRNLTASEIAKVYT
                     IARMTDLDMLNDIKTSMVESAKSGQSFDDWRKGILNLLSNKGWLHPNGHNGKDIIDPA
                     TGEVFGSPRRLETIYRTNMQTAYNAGQYQGYMANIDARPYWMYDAVGDSRTRPAHSAI
                     DGLVYRYDDPFWATFYPPNGYNCRCSVIALSERDVERQGRIVGQSTADNLVETHKIYN
                     KKGDTYLTLAYKAPDGSLYTTDRGFDYNAGRMNYRPDLDKYDRALAHQFAKAEMGGAD
                     FKTSFKQLEKEFYEVKQRLNIDGKPDKEQKIKIRNALSRQLETFAKFPKIP"
     gene            6179..>6316
                     /locus_tag="ACFM6C_001566"
     CDS             6179..>6316
                     /locus_tag="ACFM6C_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HFC6159001.1"
                     /translation="MSTFFQQTAQAMIAKHIDRFPLLKLDQVIDWHPIEHYLNRQRTR
                     YL"
BASE COUNT         1650 a         1554 c         1717 g         1395 t
ORIGIN      
        1 gtccggatgc ctgattatcg ggtatccggg caggattaag ggggtatttg ggtaaaatta
       61 ggcggtattt ggggcgaaaa cagctgaaaa cagccgaaaa cctgtgtttg gatttcggct
      121 gtcgggaggg aaaggaattt tgcaaaggtc tcctaccgtg aattagttga acgtcagttg
      181 gctgtgcgcc atgccgattt ggaattgggc ttaagccgcg cacgcgaaca agagccgttt
      241 gtcattcatg tttccgacct gttggataag gcaggcattg agtacgcggt acgcatggat
      301 aaggattttc agacgacctt taaccttgaa tatccaaata caaactacga cacctttaag
      361 cgtgtagtta ggcagatgat ttcggcgtat tactgcgttt gtaatgatgg agatgaactc
      421 gaaatttcca gcaatcgccc tgacggttac gccgtccgta tcgtattcgg cgatgtgccg
      481 gtttaaaggg gttttaaatg gactttgaat ttggtttcag aaccctgtgg ccgattgcga
      541 cggcggcatt ttggttttgg gtcaacggca tttcaggccg tctgaaagag gcggacaagc
      601 gtatcgatga ccttaaagag gagctgcacg cggtcaagct ctcgtaccac accaagcagg
      661 atgcccaagc cgaccgcaaa aatatcgcag cgtctttgga gcgcatcgaa aacaagttgg
      721 aaaaagtaaa cgaaaaactg gacaggaaag cggacaaatc atgaaagacc cgattttgga
      781 agccttggcg cgtattgaaa acaaaactga tcagacgctg aaaaatcaga aggaaatgca
      841 ggcggaaatt gcacaaatcc gccaagacac gaaacgcacg gcccttacat tcggcgcact
      901 gggcggcggc gtgattacgg tcggctggga attgcttaaa gcgaaaatgg gactgtaatt
      961 atggctcacc cgcaagaaat ccgtgaaaag ttacgtcggc tctatgtgag cggcgagcaa
     1021 actttggaaa cggcggcctt gatgtgcgaa atcccgcagg ccactgcgcg tgcgtggaaa
     1081 cgtgcggata aggaaaaagg cgacgactgg gataagatgc gcgccgccta cactttggcc
     1141 ggcggcggta ttgaggattt gagccgcgcg atgttggccg gttttatggt gcagtacaac
     1201 agcacgatga cgatgctgca ggattcgagc accgaagatt tgccgccgtc cgaccgcgcc
     1261 aagctgttgg ccagcctggc cgatgcgttt accaaaaccg tatcagccaa tgcgcgtgtg
     1321 atgccggaaa cgtcaaaact ggcgacggct ttggaattga ttgagttctt gatggcattt
     1381 gtgcaagaaa aacaccccaa acatttgcct gcctttgtcg aggtattgga gccgtttggg
     1441 gcggaagtgg agaagaagtt tggttaatag ccgtctgtca atctcccata acgtgatcct
     1501 cctactgaaa atacttcaac atctgacttt aaacgctctc ccaatattat ggtttggcaa
     1561 cgggaacagg aatatttatg aaaagcacct tcatacccat tgaattgaag aatcgatttg
     1621 acaccctgct cgtaacattg gggacaaata tcatgaattg gctcgctgtt cgccatctcc
     1681 gctttcaatc gatagacgaa agaaccaaga gcaagttcat acaattggta gcgttgcttc
     1741 tctgtagacc aattttttac tgccaccagt tctttttcca actcatctat acggctaatt
     1801 gccgccgtat aagaagattg ggcttcaaat aaatcagttt gaataccagc aatgatttga
     1861 ttaagttcga tggttttttg cgctacctct gcctctgttt tgagctggtt aaaccctttt
     1921 aaaagtgatc ctgcttcttt taggcctata aatgcgttag aaatgaatcc agtcattata
     1981 aatactcatg aaaacaaaag aattcctcaa atcccttgcc gaactggccg ccagcctgcg
     2041 ccaagtcatc gaagcggaag tggacggctt cgatgcgtcg ccaaaggcta ttactgcacg
     2101 ccgtgccaag gtatttgacc cggtaggcgg ttacgaatat ttcgtgaata cctacttccc
     2161 ccattatatc cgctcgcctg aaaaatccga actgcatgcg tttttgttca gccgtctgcc
     2221 ggagattatc cgctccccca aaggggaaaa tgaggcggta ggtgcgccgc gcggcgaagg
     2281 taaatcgacg caggttaccc agttgtttac gctgtggtgt attgtgaccg gccaaaaaca
     2341 ttatgcggtc atcgtgatgg acagtatcga ccaggcgtat ccaatgctcg aagccattaa
     2401 ggcagaactt gagtttaacc cgcgcctgaa aaccgacttt ccggaagtat gcgggcaagg
     2461 ccgtgtatgg caggccggta cgattgtgac ggccaatgac gttaaagttc aagtggccgg
     2521 tagcggtaaa aagctgcgcg gtttgcgtca cggcccttac cgtcctgact taactgtttt
     2581 ggacgatatt gagaatgacg aacaagtccg caaccccgaa cagcgcgaca agctcaatgc
     2641 gtggctgact aagactgtat tgcctttggg cggtgtcggt cagaaatacg atgtgattta
     2701 tatcggcacg attttgcatt acgacagcgt acttaaccgc actttgaata acccgttttg
     2761 gcggggtgtt aagtttaagg cgatgaaacg ctggcccgac cgcatggact tgtgggacag
     2821 atgggaggaa cttttccgaa acgacggcga gacggtggcc gaggcgtttt atcaggcaaa
     2881 caaagacgag atggagcgcg gcgcagtcac ttcttgggcg gcgcgtggcg tactcgcgct
     2941 gatgaaaatc cgcgcccgtg acggtcatgc gacatttgac agcgaatatc aaaacgaccc
     3001 agtcagtggc gaagatgcgc cgtttgccaa gtcgatgaag ttttggaacg acctgccgtc
     3061 cgatttggtg tatttcggtg cgctcgaccc gtcgctgggt aaagcggggg cgagccgtga
     3121 cccgtcggca atcgtcatcg gcggctatca gcggtcaatg ggcaggcttt atgtcgtgga
     3181 ggcgcaaatc aaaaaacgtc tgcccgacct gattatcgaa gacgttatct gcctgcaccg
     3241 tcaatatcgt tgcaaactgt ggtttgttga gacggtgcag tttcaggagt ttttaaaaga
     3301 cgagctggtc aagcgcagcg cggcgcgtgg aatacctgtc ccggcgcggg cggtcaagcc
     3361 ggtatcggac aagctcttgc ggattgagac tttgcagcct cacatggcga acggtttgat
     3421 tctgttgaat gagagccaac aaacgctgat acagcagttc cgccattttc caaaggctga
     3481 tcatgatgat ggtcctgatg ccgtgcatat gctctggtcg ggggcggtgg cgaattgtgt
     3541 gccgatagaa tggcaaagcc ctaccgataa cgattttgat gacgagataa aaagtaaatg
     3601 gagccgataa tggcaaaaaa ggacaataaa actaaaatcc aaaagcccga ggctgcattg
     3661 cagacggatg cggctcaaat tacggcgacc ggtcgggtta tcgccgagca tccgtccaat
     3721 tttattacgc cgcaaaagat gcgggccctc ttcgaggacg cagaaagcgg cgacatccgc
     3781 gcccaacacg agcttttcgc ggacattgag gagcgcgaca gcgacatcgc ggcaaatatg
     3841 ggtacgcgca aacgcgcgct gctgacgctc aactggcgcg tcgccccgcc gcgaaatgcg
     3901 acgcccgaag aagaaaagct gtccgaccaa gcctacgaaa tgatggacag cctgcctacc
     3961 ctcgaagacc tgattatgga tttgatggac gcggtagggc acggattttc tgcgttggag
     4021 gtcgagtggg tattttcaga cggcctttac ctaccccgaa actttatcca ccgcccgcaa
     4081 agctggttca aatgggacaa agacaacggg ctgctgctgc gtacccgcga aaatccggaa
     4141 ggcgaagcgt tgtggccgct gggctgggtc gttcataccc aaaaatcgcg cagcgtccag
     4201 caggcgcgca acgggctttt ccgcacgctt tcctggctgt atatgttcaa acactacgcc
     4261 gtccacgatt ttgccgagtt tttggagctg tacggcatgc ccatccgtat cggcaaatac
     4321 ggcgcgggcg caaccaaaga ggaaaaaaac accctgcttc gagcggtggc ggaaatcggt
     4381 cacaacgcgg caggcatcat gccagaaggt atggaaatcg agctgcacaa cgctgcaagc
     4441 ggtacgatgg caaccagcaa tccgtttttg cagatggccg actggtgcga aaaatcggcg
     4501 gcgcggctga ttttggggca aacgctaacc agcggtgcgg acggaaaatc cagcaccaac
     4561 gcgctgggca atatccacaa cgaggtacgc cgcgatttgc tggtgtcgga cgcaaaacag
     4621 gtggcgcaaa ccatcacaag ccaaatcatc ggaccgttcc tgcaaatcaa ctatcccaat
     4681 gccgacccaa accgcgtgcc gaaatttgaa tttgacacgc gcgagccgaa agacatcgcg
     4741 gtctttgccg acgctatccc gaaactggtg gatgtcggcg tacaaatccc cgaaagctgg
     4801 gtgcgcgaca aactggtcat tccagatgtg caggagggtg aggctgtgtt ggtgcggcag
     4861 gtaccggaca atccgataaa cagaactgca ttggcggctt tatccgccca caccgtacca
     4921 tctaaggcta cgggcaggca tcaggaaata ttggacggcg cgttggatga cgcgctggtt
     4981 gagcccgatt tcaattctca gctcaacccg atggtgcgtc aggcggttgc cgcacttaat
     5041 gcttgcaaca gctacgagga ggcagatgcc gcactgaatg cgctttatcc gaatttggac
     5101 aacgcgaaac tgcgtaccta tatgcagcag gccttgttta tcagcgatat tttgggacaa
     5161 gaccatgccc gcgcctgatt tgggatttgc cttaagtctg ccgccaaaaa aggcaatcga
     5221 gtggctggaa agtaaaaagg ttacggcgga gagctaccgc aatctgacag cctccgaaat
     5281 tgccaaagtc tatacgattg cccgcatgac cgacttggat atgctcaacg acatcaaaac
     5341 ttcgatggtt gaatcggcaa aaagtggaca gtcgtttgac gattggcgaa aaggtatctt
     5401 gaatctgctc agcaacaagg gctggctgca tccgaacggg cataacggta aggatatcat
     5461 cgacccagcc accggcgagg tattcggttc gccgcggagg ttggagacga tttaccgtac
     5521 caacatgcaa actgcctaca acgccggtca atatcaagga tatatggcaa atattgatgc
     5581 acgaccttat tggatgtatg acgcggtagg cgacagccgc acccgtccgg cgcattcggc
     5641 aatagacggg ctggtgtacc gctacgacga cccgttttgg gcaacgtttt acccgcccaa
     5701 cggctacaac tgccgctgct cggtcatcgc tctgtcggag cgggatgtgg aacgccaggg
     5761 gcggattgtc gggcaaagca cggcggacaa tctggtcgag acccataaaa tctacaacaa
     5821 aaaaggcgat acttatctga cccttgccta taaagcaccg gatggcagtc tgtacacgac
     5881 cgatcgagga tttgattaca acgccggacg aatgaactac cgccccgatt tagacaagta
     5941 cgaccgtgcg ttggcgcatc aatttgccaa agcggaaatg ggtggtgcgg attttaaaac
     6001 cagctttaaa cagcttgaaa aagagtttta tgaagtcaag caacgtttga atattgatgg
     6061 caagcccgat aaagagcaga aaatcaaaat ccgaaacgcg ctatcaagac agcttgagac
     6121 ctttgcaaaa ttccccaaaa tcccctaaat tcccaccatg acatttagga gatttctcat
     6181 gagcaccttc ttccaacaaa ccgcccaagc catgattgcc aaacacatcg accgcttccc
     6241 actattgaag ttggaccagg tgattgattg gcacccgatc gaacactacc tgaaccgtca
     6301 aagaacccgt tacctt
//
LOCUS       DAXHPV010000117         6177 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.117, whole genome shotgun sequence.
ACCESSION   DAXHPV010000117 DAXHPV010000000
VERSION     DAXHPV010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6177)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6177)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6177
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.117"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..125
                     /locus_tag="ACFM6C_001567"
     CDS             <1..125
                     /locus_tag="ACFM6C_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFC6159002.1"
                     /translation="LLPSGQNIHRHQPESFNTEYHPDFWVNSLQDLVPIIDSNT"
     gene            173..367
                     /locus_tag="ACFM6C_001568"
     CDS             173..367
                     /locus_tag="ACFM6C_001568"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159003.1"
                     /translation="MTKYYSWGVNGFPPYVFDTIWKRWKLNGRGGGYRVRHPGRHNRR
                     GQSGKAAAAQKPRDLDSISD"
     gene            491..1666
                     /locus_tag="ACFM6C_001569"
     CDS             491..1666
                     /locus_tag="ACFM6C_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HFC6159004.1"
                     /translation="MLNTFLSPWPCFTQEEADAVSKVLLSNKVNYWTGSECREFEKEF
                     AAFAGTRYAVALANGTLALDVALKAMGIGAGDDVIVTSRTFLASASCIVNAGANPVFA
                     DVDLNSQNISAETVKAALTPNTKAVIVVHLAGMPAEMDGIMTLAKEHDLWVIEDCAQA
                     HGAKYKGKSVGSIGHVGAWSFCQDKIMTTGGEGGMVTTNDKTLWEKMWSYKDHGKSYD
                     AVYHREHAPGFRWLHESFGTNWRMMEMQAAIGRIQLKRLPEWTACRQAHAAKLAESLG
                     KFKSIRLVEVADYIGHAQYKFYAFVKPEHLKDGWTRDRIVNELNARKVPCYQGSCSEV
                     YLEKSFDDTPWRPKERLKNAVELGDTSLMFLVHPTLTDDEIAFCKKHIEAVLAEATR"
     gene            1714..3624
                     /gene="pglD"
                     /locus_tag="ACFM6C_001570"
     CDS             1714..3624
                     /gene="pglD"
                     /locus_tag="ACFM6C_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-dependent dehydratase PglD"
                     /protein_id="HFC6159005.1"
                     /translation="MTLETLIALPRNIKKICFLIHDFLMIFIAFWFTQSLKADYSNEW
                     FDPANWQSFLLTAPLTIGLFVRMGLYRAVTRFISFRILSTALAGSLASAVLFFLNTLI
                     FEERLRLALPIVYFLLLFVSVTGSRMVLRGLLSEHPKKQMIPVIIYGAGRSGRQLLEA
                     VKQIREYSAVAFVDDNPKLWHTVIYDLAVYQPDAIAFLIERYGVEKILLAIPGATQEQ
                     RRRIISKLEAYPCEVLTIPGMKDLMDGKISIGTLKKISVSDLLGRDSVAPDNRLMSAD
                     IEGKTVMVTGAGGSIGSELCRQIIRRRPEKLLLFELSEFALYAVEKELRETCIQKRLD
                     TEILPFLGSVQNRTLLEHVMTAFSVATVYHAAAYKHVPMVEFNTVEGIRNNIFGTLEC
                     ALAATTSGVRTFVLISTDKAVRPTNTMGASKRMAELCLQALAAEPGQKTRFSMVRFGN
                     VLGSSGSVVPLFEKQIAEGGPLTLTHPDITRYFMTIPEAAQLVIQAGAMGTGGDVFVL
                     DMGESVKIIDLARQMITLSGLKPKTPEQPDGDIEILITGLRPGEKLYEELLIGDNVRK
                     TGHPRIMTADEAMLPWHELSVLLDRIRAACDRYDQQAIRTLLINAPTGFTPSDGICDL
                     LWVRETHRKNAV"
     gene            3680..4972
                     /locus_tag="ACFM6C_001571"
     CDS             3680..4972
                     /locus_tag="ACFM6C_001571"
                     /EC_number="2.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--pyruvate transaminase"
                     /protein_id="HFC6159006.1"
                     /translation="MQFSAFGEKFTQHSGILQLMDDLGDALKSDKPVNMLGGGNPARI
                     PEIDRAFADIFSKLAAEHAVENIGNYSNPQGDAALIDALTAFLNREYGWNLTADNIAL
                     TNGSQNAFFYLFNLFGGKFKLSDGTSAEKAILLPLAPEYIGYADVHVEGQHFVSVKPK
                     IENVEHEGEAGFFKYRVDFDALENLPELKAGKIGAICCSRPTNPTGNVLTDGEMARLD
                     ALAREHGIPLIIDNAYGMPFPNIIYSDVTLNWHENIILCFSLSKVGLPGVRTGIIVAA
                     PEVVKAVSSLNAIVNLAPTRFGAAIAAPLLESGEMKRLADQVIRPFYRNQAQTAVSLL
                     KRELGAYPMKIHKPEGAIFLWLWFENLPVSSQTLYEMLKAEGTLIIPGEHFFVGIDTQ
                     DYPHAGECIRMSIAQDAQTLEKGIAAIGKTVRKLYDNV"
     gene            complement(5024..5860)
                     /locus_tag="ACFM6C_001572"
     CDS             complement(5024..5860)
                     /locus_tag="ACFM6C_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HFC6159007.1"
                     /translation="MIDLHCHSTVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIA
                     EARAEADRLGLRLINGVEISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRLE
                     AIAAKLEKKGIGGAYDGALALAANKEMVSRTHVAEFLIRAGHVKNKQQAFTKYLGDGK
                     SCAVRHEWATLEDCVSAVNGAGGMAVIAHPMRYDLSATAKRNLFEEFKNLGGAGIEVH
                     SGNCCKNDRLNYAFLAERFGMLASAGSDFHRLNDFSSGILGACPELPENCRPVWAHFS
                     RH"
BASE COUNT         1470 a         1878 c         1561 g         1268 t
ORIGIN      
        1 gattgcttcc ctccggacag aacatccacc gccaccagcc tgaaagtttt aacacagaat
       61 atcatcccga cttttgggtt aactcccttc aagatttagt tcctataatt gattcaaata
      121 cttaaccatt acataatcaa acatgcactc acaatattaa aaggactatt tcatgacaaa
      181 atattattca tggggcgtaa acggctttcc gccctacgtt ttcgacacca tttggaaacg
      241 atggaagttg aatgggcgcg ggggcggtta tcgtgtgcga catcccggac ggcataaccg
      301 tcgcgggcaa tccggcaaag ccgctgccgc gcaaaaaccc cgagacctcg acagcataag
      361 cgattaaaat acacccccgt acagaccgat tttgacaaca cctgcggcgc gcgcccgatt
      421 cttcggaaca cgcccccttc agacggcata gggtcggaaa tgccgtctga aaaccgacgg
      481 acaaaccatc atgctgaaca ctttcctttc cccgtggccc tgcttcaccc aagaagaagc
      541 cgatgccgtt tccaaagtcc tgctgtccaa caaagtcaac tactggacgg gcagcgaatg
      601 ccgcgaattt gaaaaagaat ttgctgcttt cgccggcacg cggtacgccg tcgcccttgc
      661 caacggcacg ctggcactcg atgtcgcgct caaagcaatg ggcataggcg cgggcgacga
      721 tgtgattgtt acctcgcgca ccttccttgc ctccgcatcc tgcatcgtta acgcaggcgc
      781 aaaccccgtg tttgccgacg tggatttgaa cagccaaaac atcagcgcgg aaaccgtcaa
      841 agccgcgctg acgccgaata ccaaagccgt catcgtcgtc caccttgccg gtatgcctgc
      901 cgaaatggat ggcattatga ctttggcaaa agaacatgat ttgtgggtga ttgaagactg
      961 cgcccaagcg cacggcgcaa aatacaaagg caaatccgtc ggctctatcg gacacgtcgg
     1021 cgcgtggtcg ttctgccaag acaaaatcat gaccaccggc ggcgaaggcg gtatggttac
     1081 gaccaacgac aaaaccctgt gggaaaaaat gtggtcgtac aaagaccacg gcaaaagcta
     1141 cgatgccgtg taccaccgcg aacacgcgcc cggtttccgc tggctgcacg aaagtttcgg
     1201 cacaaactgg cgtatgatgg aaatgcaggc ggcaatcggg cgcatccagc tcaaacgcct
     1261 gcccgaatgg actgcctgcc gtcaagcgca cgccgccaag ctggcggaaa gcctaggcaa
     1321 attcaaaagt atccgcttgg ttgaagtcgc cgactacatc ggacacgcgc aatataagtt
     1381 ctacgccttc gtcaaacccg aacacctcaa agacggctgg acgcgcgacc gcatcgtgaa
     1441 cgaactgaac gcacgcaaag tcccctgcta tcaaggcagc tgctccgaag tctatttgga
     1501 aaaatctttc gacgacacgc cttggcggcc gaaagagcgt ttgaaaaatg ctgtcgaact
     1561 gggcgacacc agcctgatgt tcttggtgca cccgacgctg accgacgacg aaatcgcgtt
     1621 ctgcaaaaaa cacatcgaag ccgtattggc agaagccaca cgataaccct tcagacggca
     1681 tatgccgcct gaaagcacat accgccccac gatatgactc tggaaaccct gatcgccctg
     1741 ccgcgcaaca tcaagaaaat ctgtttcctc atacacgatt ttctgatgat tttcattgca
     1801 ttctggttca cccaaagcct aaaggccgac tactcgaacg aatggttcga ccctgccaac
     1861 tggcagtctt tcctattgac cgcgccgttg accatcggcc tgttcgtcag aatggggctc
     1921 taccgtgccg ttacacgctt catcagcttc cgcatcctct ccaccgcgct ggcaggcagc
     1981 ctcgcctccg ccgtattgtt cttcctcaac acattgattt ttgaagaaag gctgcgcctc
     2041 gccctgccga ttgtctattt cttactgctg tttgtttccg tgaccggctc gcgtatggtt
     2101 ttgcgcggac tgttgtccga acaccccaaa aaacagatga tccccgtcat catttacggc
     2161 gcgggacggt cgggcagaca actgcttgag gccgtcaaac agatacgcga atattccgcg
     2221 gtcgcctttg tggacgacaa ccccaagctt tggcacaccg tcatctacga ccttgccgtt
     2281 taccagcccg atgccatcgc cttcctcatc gaacgctacg gcgtggaaaa aatcctgctc
     2341 gccatccccg gcgcgaccca ggaacaacgc cgccgaatca tcagcaaact ggaagcctat
     2401 ccctgcgaag tgttgaccat tcccggaatg aaagacctga tggacgggaa aatcagcatc
     2461 ggcacgctca aaaaaatctc cgtgtccgac ctgctcgggc gtgattccgt cgcgcccgac
     2521 aaccgcctca tgagtgccga catcgaaggc aaaaccgtca tggtaaccgg cgcgggcggc
     2581 tccatcggtt cggaactctg ccgccagatt atccgccgcc gccccgaaaa gctgctgctg
     2641 tttgagttat ccgaattcgc cctgtacgcc gtcgaaaaag aattgcgcga aacctgcatc
     2701 caaaaacgcc tcgacaccga aatcctgccc tttctcggtt cggtgcaaaa ccgcacgctg
     2761 ctcgaacacg tcatgaccgc cttttccgtt gcgaccgtct atcacgccgc tgcctacaaa
     2821 cacgtcccca tggtcgaatt caacaccgtc gaaggcatac gcaacaacat tttcggcaca
     2881 ctcgagtgcg cgcttgccgc cacgacatcg ggcgtaagaa ctttcgtcct catctccacc
     2941 gacaaagccg tccgccccac caacaccatg ggtgccagca aacgcatggc ggaactctgc
     3001 cttcaggcac tcgccgccga acccggacaa aaaacccgct tcagcatggt acgtttcggc
     3061 aatgttttag gttcgtccgg ctccgttgtc ccgctgtttg aaaaacagat tgcagaaggc
     3121 ggcccgctta ccctgaccca ccccgacatc acacgttatt tcatgaccat acccgaagcc
     3181 gcccaactcg tcatacaggc aggcgcgatg ggtacgggcg gcgacgtatt cgtcctcgat
     3241 atgggcgaat ccgtcaaaat catcgacctt gcccgccaaa tgattacctt aagcggcctc
     3301 aaacccaaaa cacccgaaca acccgacggc gacatcgaaa tcctcattac cggactgcgt
     3361 cccggcgaaa aactctacga agagctgctc atcggcgaca acgtccgcaa aaccggccat
     3421 ccgcgcatta tgacggctga cgaggcgatg ctgccgtggc acgagctctc tgtcctgctc
     3481 gaccgcatcc gtgcggcctg cgaccgttac gaccagcagg caatccgcac cctgctcatc
     3541 aacgccccga ccggctttac cccaagcgac ggtatctgcg acctgctttg ggtacgagaa
     3601 acacacagaa aaaatgccgt ctgaaccttc agacggcata acgtacaaac caacctgcct
     3661 gacacacacg gagtttgata tgcagttttc ggcattcggc gaaaaattca cgcaacacag
     3721 cggcatcctg caactgatgg acgacctcgg cgacgcgctc aaaagcgaca agcccgtcaa
     3781 tatgctcggc ggaggcaacc cggcacgcat tccggaaatc gatcgggcgt tcgccgacat
     3841 attctccaaa ctggcggcgg aacacgccgt cgaaaacatc ggcaactact ccaatcccca
     3901 aggcgatgcc gcgctgattg acgcgctgac cgccttcctc aaccgcgaat acggctggaa
     3961 tttgaccgcc gacaatatcg cgctgaccaa cggttcgcaa aacgcgtttt tctatttatt
     4021 caacctcttc ggcggcaaat tcaagctttc agacggcaca tccgcagaaa aagccatttt
     4081 gttgccgctc gcgcccgaat acatcggcta tgccgacgta catgtcgaag ggcagcactt
     4141 cgtttctgtc aagcccaaaa tcgaaaacgt cgaacacgaa ggcgaagcag gcttcttcaa
     4201 ataccgcgtg gactttgacg cactggaaaa cctgcccgaa ctcaaagcgg gcaaaatcgg
     4261 cgcgatttgc tgttcgcgcc cgaccaaccc gaccggcaat gtgttgaccg acggcgaaat
     4321 ggcacgtttg gacgctttgg cgcgtgaaca cgggattccg ctgattatcg acaacgccta
     4381 cggaatgccg ttccccaaca tcatttacag cgacgtaacg ctgaattggc acgaaaacat
     4441 catcctctgc ttcagccttt ccaaagtcgg cctgccgggc gttcgcaccg gcatcattgt
     4501 cgccgcgccc gaagtcgtca aagccgtcag cagcctgaac gcgattgtga accttgcccc
     4561 cacgcgcttc ggcgcggcca tcgccgcccc gctactggaa agcggcgaga tgaaacggct
     4621 tgccgaccaa gtcatccggc cgttttaccg caatcaggcg caaaccgccg tctcgctgct
     4681 caagcgcgag ctgggcgcgt acccgatgaa aatccacaaa cccgaaggcg cgattttcct
     4741 gtggctctgg tttgaaaacc tacccgtttc ttcgcaaacc ctgtacgaaa tgctcaaagc
     4801 cgaaggtacg ctgattattc cgggcgagca tttcttcgtc ggcatcgaca cacaggatta
     4861 cccgcacgcg ggcgagtgca tccgcatgag catcgcgcag gacgctcaaa cgctggaaaa
     4921 aggcattgcc gccatcggta aaaccgtccg aaaactgtac gacaacgttt aaaccgcaaa
     4981 aaatgccgtc tgaaagcctt tcagacggca tttttatccg cattcaatgt cgggagaaat
     5041 gcgcccacac cggcctgcag ttttccggca gttcgggaca cgcgccgagg atgccgctgc
     5101 tgaagtcgtt taaacggtgg aagtcgctgc ccgcactggc gagcatgccg aagcgttctg
     5161 ccaaaaatgc gtagttgagg cggtcgtttt tgcagcagtt gccgctgtgg acttcgatgc
     5221 ccgcgccgcc gaggttttta aattcttcaa acagattgcg cttggcggta gcggacaaat
     5281 catagcgcat cggatgggcg atgactgcca tgccgcccgc gccgttgacg gcggagacgc
     5341 agtcttccag cgtcgcccat tcgtgtcgga cggcgcagga tttgccgtcg cccaagtatt
     5401 tggtgaacgc ctgctgcttg tttttgacat gtcccgcccg gatgaggaac tcggcgacgt
     5461 gggtgcggct gaccatttct ttgtttgccg ccagcgcgag cgcgccgtcg tatgcgccgc
     5521 cgatgccttt cttttcgagc ttggcggcga tggcttcgag gcgtttcaga cggccttgcc
     5581 gcacttgcgc caacaggttt tgcaggtttt cgtcttgttc gtcaaagtct aagccgacaa
     5641 cgtgtatggt acgcccgcgc cacgttacgg agatttccac gccgttaatc aggcgcaaac
     5701 cgagcctgtc ggcttcggca cgcgcttcgg cgatgccgcc ggtgtggtca tggtcggtca
     5761 acgccagcag cgtgcagccg ttttgatgcg cgaggcgcac gacttcggcg ggggaaagca
     5821 taccgtcgga aacggtggaa tggcagtgca ggtctatcat ggggtgttat atgtgtggtg
     5881 aatgaaggtc ggggggcaat attgtcgggc agtgtggcgg cggcggtcat tttaaaaaac
     5941 aggtgtatgg caaatgcaaa gaaaaagtcc ctataccgtc attcccgcgc aggcgggaat
     6001 ccagactttg atttattgga aatgtttaag gttaaccgct atttcaaact tccggattcc
     6061 cgcctgcgcg ggaatgacga tagggatgtt ttcaatttta atctactata aaagactgtc
     6121 tgaaaacgtg gttttatagt gaattaaatt taaaccggta cagcgttggc tcgcctt
//
LOCUS       DAXHPV010000118         6146 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.118, whole genome shotgun sequence.
ACCESSION   DAXHPV010000118 DAXHPV010000000
VERSION     DAXHPV010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6146)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6146)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6146
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.118"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(275..709)
                     /locus_tag="ACFM6C_001573"
     CDS             complement(275..709)
                     /locus_tag="ACFM6C_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HFC6159008.1"
                     /translation="MAFGSMNSGDDSPMSDINVTPLVDVMLVLLIVFMITMPVLTHSI
                     PLELPTASEQTNKQDKQPKDPLRLTIDANGGYYVGGDSASKVEIGEVESRLKAAKEQN
                     ENVIVAIAADKAVEYDYVNKALEAARQAGITKIGFVTETKAQ"
     gene            complement(712..1374)
                     /gene="exbB"
                     /locus_tag="ACFM6C_001574"
     CDS             complement(712..1374)
                     /gene="exbB"
                     /locus_tag="ACFM6C_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HFC6159009.1"
                     /translation="MNLKLVFESGDPVLIGVFVLMLLMSIVTWCLVVLRCIKLYRARK
                     GNAAVKRHMRDTLSLNDAVEKVRAVDAPLSKLAQEALQSYRNYRRNEASELAQALPLN
                     EYLVIQIRNSMAQIMRRFDYGMTALASIGATAPFIGLFGTVWGIYHALINIGQSGQMS
                     IAAVAGPIGEALVATAAGLFVAIPAVLAYNFLNRGTKILTQDLDAMAHDLHVRLLNQK
                     DS"
     gene            complement(1440..2282)
                     /locus_tag="ACFM6C_001575"
     CDS             complement(1440..2282)
                     /locus_tag="ACFM6C_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HFC6159010.1"
                     /translation="MDKERILTPAVVFSVALLHLAMVALLWQAHKLPVIESGNVIEFV
                     DLGDFGGGDGAPEGAGAPAAPEPQPEPEPPKPVEPPKPVLKPVVTKKADADIQQPKEE
                     PKPEEKPKPEEKPKPEPKPEAKPVPKPAEKPVEKPSEKPAEHPSNASAKADSEQGNGE
                     DKGTGTKGDGTGRGEGSGKGSGGVKGEHGEGAGSSKGNPLRANGSIPRPAYPTLSMEN
                     DEQGTVVLSVLVSPGGHVESVKIVKSSGFSRLDNAARKAAQNGHFQANAWTEFKVPVK
                     FELN"
     gene            2537..3175
                     /locus_tag="ACFM6C_001576"
     CDS             2537..3175
                     /locus_tag="ACFM6C_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HFC6159011.1"
                     /translation="MFQNFDLGVFLLAVLPVLLAITVREVARGYTARYWGDNTAEQYG
                     RLTLNPLPHIDLVGTIIVPLLTLMFTPFLFGWARPIPIDSRNFRNPRLAWRCVAASGP
                     LSNLAMAVLWGVVLVLTPYVGGAYQMPLAQMANYGILINAILFALNIIPILPWDGGIF
                     IDTFLSAKYSQAFRKIEPYGTWIILLLMLTGVLGAFIAPIVRLVIAFVQMFV"
     gene            complement(3627..4427)
                     /locus_tag="ACFM6C_001577"
     CDS             complement(3627..4427)
                     /locus_tag="ACFM6C_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HFC6159012.1"
                     /translation="MKKTIFNITKMDCPSEEQLIRMRLKDVSDIYELQFDIAGRCLTV
                     YHDNQDTTILQVLEPLNFDSHIISTEVIVDKIVFNKPDEHLEKRLLYQVLMINFVFFI
                     IECSVGIFANSMGLIADSLDMLADSFVYILALSAIGMTLAYKKRVAFLAGITQIILAL
                     FGVIEVIRRFIGAEQLPNYQLMIGTAFLALIANWLCLYLLSKNQNKEIHIKASMIFTS
                     NDIIINIGVIAAGALTLLTHSSYPDLIIGMIVFVIVLFGARNILKLAK"
     gene            complement(4563..5069)
                     /locus_tag="ACFM6C_001578"
     CDS             complement(4563..5069)
                     /locus_tag="ACFM6C_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159013.1"
                     /translation="MDFFDFFAQGKYKKIATEQGLDRKYFIFHYIVCNLSAISSFCLM
                     KVIHSYTILCLLIMIIGIAFGFILRNRVLSIVKNKQNFLSDMFPLEMPFFSRVYKIPI
                     LARFLNRGMKWLYLQNFFCLVMICFSISLILNEERGWMPYFICYWFGLCYPANTYYVF
                     LSRDYKHI"
     gene            complement(5406..6047)
                     /locus_tag="ACFM6C_001579"
     CDS             complement(5406..6047)
                     /locus_tag="ACFM6C_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GrxB family glutaredoxin"
                     /protein_id="HFC6159014.1"
                     /translation="MKLYIYDHCPFCVRARMAAGLFGADVEEAVLANDDEATPIGMIG
                     AKQVPVLQKEDGSFMGESLDIVRHFDREDRLKDEVRPEIRAWLDKVGGYNDKLVQPRV
                     IKIGLPEFATPEAVKYFTDKKEKSIGSFSANLNKTAQYLERINADLQELENLMDGASD
                     GINGGIGMEDILVFPVLRNLTVVRGIAFPRKTMDYLIGMSEKSGVPLYFDRAL"
BASE COUNT         1641 a         1540 c         1270 g         1695 t
ORIGIN      
        1 cggcttcgtt gccttgtcct gatttttgtt aatccactat aaaaattaga aatgcacatt
       61 ttcattattc tcgcgcaggc aggactccag acttacccat ttcagtaatg tttgaaaata
      121 aaagaaaaat cagatgtttg tattcccgcc tgcgcagaaa tggagacggc gctctgtcgt
      181 ctcatttttg ttttaatcaa ctatatatag ctgattaaac ataagaaatg ccgtctgaaa
      241 gactttcaga cggcattcgt tcaagcgtcg aactttattg cgccttggtt tcggttacaa
      301 aaccgatttt ggtgattcct gcctgacggg cggcttctaa agctttgttt acataatcgt
      361 attccaccgc cttgtctgcc gcaatcgcca caatcacgtt ttcattctgc tccttggcgg
      421 ctttcagacg gctttccact tccccgattt ccactttgct tgcagaatcc ccgccgacat
      481 aatagccgcc gttcgcatca atcgtcaggc gcagggggtc tttaggctgt ttgtcctgct
      541 tgtttgtctg ctcggacgcg gtcggcagtt ccaaagggat ggaatgcgtc agcaccggca
      601 tagtaatcat aaacacaatc agcaacacca gcatcacgtc caccaacggc gtaacgttga
      661 tgtcggacat cggagaatcg tcgccggaat tcatcgaacc aaatgccata atcagctatc
      721 cttttgatta agcaggcgga cgtgcaaatc gtgcgccatc gcatccaaat cctgggtcag
      781 tatttttgtg ccgcgattga ggaagttgta tgccaacacc gccggaatcg ccacgaacaa
      841 acccgccgcc gtcgccacca gtgcctcgcc aatcgggccg gcaaccgccg caatactcat
      901 ctgcccgctt tgcccgatat tgatcagggc gtggtaaatc ccccaaaccg tgccgaacag
      961 cccgataaac ggcgcggtcg cgccgatgga ggcaagcgcg gtcatcccgt aatcaaaccg
     1021 gcgcataatc tgcgccatac tgttgcggat ttgaatgacc aaatactcgt tcaacggcaa
     1081 agcctgcgcc agttcggacg cttcgtttcg gcggtagttg cggtaagact gcaatgcctc
     1141 ttgcgccagt ttggacaaag gcgcatcgac ggcgcgcact ttttcgaccg cgtcgttcag
     1201 cgacaaagta tcgcgcatat gccgtttgac ggcggcattc cctttgcgcg cccgatacag
     1261 cttgatgcag cgcaagacaa ccaaacacca cgttacgata ctcatcaaca gcatcaacac
     1321 aaacacaccg atcaggacgg gatcgcccga ttcaaatact aatttcaaat tcataatgat
     1381 tccaacactg aaaaaaccaa tcaaacatcc aagctgccgc aaaccgctgc ggcaaccgcc
     1441 taattcaatt caaacttgac ggggacttta aactccgtcc aggcattggc ttgaaaatgc
     1501 ccgttttgcg ccgccttgcg tgccgcattg tccaaccgag aaaaaccact gcttttcacg
     1561 attttaacgg actcgacatg accgcccgga gaaaccaaaa cgctcaaaac aaccgtaccc
     1621 tgctcgtcat tctccataga aagcgtggga taagccgggc gcggaatgct gccgttggcg
     1681 cgtaaaggat tgcctttgct gctgccggct ccttccccgt gttcgccttt gacaccgccg
     1741 ctacctttac cgctgccttc tccgcgcccc gttccgtctc ctttggtacc ggttccctta
     1801 tcttccccat taccctgctc gctgtctgct ttggcagaag cattgctggg atgttcggca
     1861 ggtttttcag acggcttctc gaccggtttt tccgccggtt tcgggacagg cttcgcttcc
     1921 ggcttaggct ctggtttcgg tttttcttcg ggtttcggct tttcttcagg tttcggctct
     1981 tccttaggct gctgaatatc cgcatccgcc tttttcgtaa ccaccggctt caaaaccggc
     2041 ttgggcggct cgacaggttt gggcggctca ggctcaggtt gcggctcagg cgcagcaggc
     2101 gcacctgcgc cttcgggtgc accgtcccct ccgccaaaat cacccaaatc gacaaattcg
     2161 ataacatttc ctgactctat cacgggcagc ttgtgcgcct gccagagcaa tgccaccatt
     2221 gccaaatgca gcagtgcgac ggaaaacacg actgcggggg ttaaaattcg ttctttatcc
     2281 ataattcggg cataataata gcaacaattc ctatttgcaa cctattttta caatttttgg
     2341 tcatatgaat gtctgttccg ttcacaggca aaccgtgttt aaacgctgta ttacagcaaa
     2401 tcatcagata acgggccggc agaaaaaatg attccgtctg atttcttatt ccaataaaat
     2461 caggttagat gatatattgc cgcttctgtc tgtcagccgt ttcgggctgc acaccacatc
     2521 tgttcaaagg aaaaccatgt ttcaaaattt tgatttgggc gtgtttctgc ttgccgtcct
     2581 gcccgtgctg ctcgccatta ccgtcaggga ggtggcgcgc ggctatacgg cgcgctactg
     2641 gggagacaac actgccgaac aatacggcag gctgacactg aaccccctac cccatatcga
     2701 tttggtcggc acaatcatcg taccgctgct tactttgatg ttcacgccct tcctgttcgg
     2761 ctgggcgcgt ccgattccta tcgattcgcg caacttccgc aacccgcgcc ttgcctggcg
     2821 ttgcgttgcc gcgtccggcc cgctgtcgaa tctggcgatg gctgttctgt ggggcgtggt
     2881 tttggtgctg actccgtatg tcggcggggc gtatcagatg ccgttggctc aaatggcaaa
     2941 ctacggtatt ctgatcaatg cgattctgtt cgcgctcaac atcatcccca tcctgccttg
     3001 ggacggcggc attttcatcg acaccttcct gtcggcgaaa tattcgcaag cgttccgcaa
     3061 aatcgaacct tatgggacgt ggattatcct actgctgatg ctgaccgggg ttttgggtgc
     3121 gtttattgca ccgattgtgc ggctggtgat tgcgtttgtg cagatgttcg tctgactggc
     3181 tttcagacgg cataaacgct ccagaaaacg cggcaggaca tattgccctg ccgcgttttc
     3241 ctgtagtgta atcttatttt tttcatcatt attagaacca ggttgcatga taataccttt
     3301 cattaactga aacactgatt aagaaactcc agtctgtcta atgatgaggt tttcacatcg
     3361 ccaaaacttg ccaatcaaat gctggattta ttgccgtctg agatttggtc aaatccaaag
     3421 gcgacattct tagaccctgt gtgtaaatca ggggtatttt tgcgtgaaat cgtcaaacgc
     3481 ttggatgaag gcttgaccaa tcaaatacca gataaacaaa ctcgcattaa ccacatttta
     3541 aaaaatcaag tttttggaag tactgccacg tatgtaggta gctttgaccg atatttgcat
     3601 aaaaactcct ttgctggtga aaggaattat tttgccaatt ttaaaatatt tctggcacca
     3661 aatagtacaa tgacaaagac aatcatgcca atgattaaat caggatagct agaatgagtc
     3721 aataacgtca atgctcccgc cgctatcaca ccgatattga tgataatgtc attggatgta
     3781 aaaatcatgc tggctttgat atggatttct ttattttgat ttttgctcag tagatataag
     3841 cacagccagt ttgcaatcaa tgccaaaaat gccgtgccaa tcatcagttg ataattgggc
     3901 agctgctcag caccgataaa acgcctaatc acttctatca ccccaaataa cgccaatatt
     3961 atctgcgtta tccccgccaa aaatgccaca cgttttttat acgccagcgt cataccaatg
     4021 gctgatagcg ccaatatata gacaaagctg tccgccagca tatctagact atcagcaatc
     4081 agccccatag aattagcaaa aataccaacc gaacactcta tgataaaaaa cacaaagtta
     4141 atcatgagca cttgatataa taatcttttt tctaagtgct catcaggctt gttaaacact
     4201 atcttatcaa caatcacttc ggtggaaatg atatgactat caaaattaag cggttcaagt
     4261 acttgtaaaa tcgttgtatc ttgattatcg tgatagacgg ttaagcaccg cccagcaata
     4321 tcaaactgta attcataaat atcagacaca tcttttaaac gcatgcgaat gagctgttct
     4381 tcggacgggc agtccatttt ggtaatgtta aaaatggtct ttttcatcta tttagttcct
     4441 tgttttgatc aggttggctc aaataaatct gtgtttatat tgctgcttgg taatttttgg
     4501 atggtttgag taaattgatt aggttaaaat ttacctttgg aagtaccgcc acgcataata
     4561 gtttagatat gtttataatc tctggataaa aaaacgtaat aagtgtttgc tggataacaa
     4621 agtccaaacc aatagcagat aaaataaggc atccaccccc tttcttcatt aaggataaga
     4681 gatatcgaga aacaaatcat aactaaacag aaaaaatttt ggagataaag ccatttcatt
     4741 cccctattca agaatctggc caagataggt attttgtata ctctagaaaa gaaaggcatt
     4801 tccaagggaa acatatcaga taaaaaattt tgtttatttt ttactataga tagaacccta
     4861 tttctcaaga taaatccaaa tgcaatgcca attatcatta ttaataaaca aaggatagta
     4921 taactatgga taaccttcat taaacaaaaa gaagaaatgg cagataaatt acatacgata
     4981 tagtggaata taaaatattt acggtctaaa ccttgttcag ttgcaatttt tttatactta
     5041 ccttgcgcaa aaaaatcaaa gaaatccatt aaactatctt tcacattaga aatttaaaag
     5101 ctaaataata cgacaaacaa tgtgaagtac tattcatggt ttatttaaaa aataatacta
     5161 ttctgaacat tatttagata cagaaattaa caaattagaa ctaaacaagc ttttaaatac
     5221 tttaatttta ttggaaagct ataaaaggaa ctataacttt acacactagt cacttctttt
     5281 taagaggcaa aagggattgg gaaggtcgtc ttggagataa gcactggtat ttcggccaat
     5341 ggtaaataga gtttacctca aatagggtag aacctccttc atctgtcagt taataacagc
     5401 cacttttaca atgccctgtc gaaataaagt ggcacgcccg atttttcact cataccgatt
     5461 aaataatcca tcgtcttccg agggaacgcg atgccgcgca ccacggtcag attcctcaaa
     5521 acggggaaaa ccaaaatatc ctccataccg attccgccgt tgatgccgtc tgaagcaccg
     5581 tccatcaaat tttccaactc ttgcaaatct gcgtttatcc gttcgaggta ttgggcggtt
     5641 ttattcaaat tggcggaaaa gctgccgatg cttttctctt ttttgtctgt aaaatatttc
     5701 accgcttccg gcgttgcaaa ttcaggcagc ccgattttga tcacgcgcgg ctgcaccagt
     5761 ttgtcgttgt atccgcccac cttgtccagc cacgcccgta tctcggggcg gacttcgtct
     5821 ttcagacggt cttcgcggtc gaaatgccgc acaatgtcca aactctcgcc cataaacgaa
     5881 ccgtcttctt tttgcaggac gggcacttgt ttcgcaccga tcataccgat cggcgttgcc
     5941 tcgtcgtcgt ttgccagcac ggcttcttca acgtccgcgc caaacagccc ggcagccatc
     6001 cgcgcacgca cgcaaaacgg gcaatggtcg taaatataca gtttcatcaa aatattcctc
     6061 gtcaacctgt cggtaccggc taccttaaca ccccgcgcca cccgaaacaa gtttatcttc
     6121 ccgcctatgc accgtaaata aataag
//
LOCUS       DAXHPV010000119         6071 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.119, whole genome shotgun sequence.
ACCESSION   DAXHPV010000119 DAXHPV010000000
VERSION     DAXHPV010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6071)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6071)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6071
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.119"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(205..417)
                     /locus_tag="ACFM6C_001580"
     CDS             complement(205..417)
                     /locus_tag="ACFM6C_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HFC6159015.1"
                     /translation="MELGYTPYNLRTLRNRCKLTQAELAQIVGVKHYIQVGRWEAEPD
                     TETRRADMPLEKWRQFLDWTEKTNAV"
     gene            complement(429..710)
                     /locus_tag="ACFM6C_001581"
     CDS             complement(429..710)
                     /locus_tag="ACFM6C_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159016.1"
                     /translation="MNRAALFNRYPEWIIGQDGASRFITHCRYPRLIAKIHRQTDSEC
                     PGGHYRHSENGITLYDFIFFDGKPADEARFAAVLTETCRRAVKKICETK"
     gene            complement(757..960)
                     /locus_tag="ACFM6C_001582"
     CDS             complement(757..960)
                     /locus_tag="ACFM6C_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159017.1"
                     /translation="MNIIEQEMKHSSLRKVDAEIAKIIADAHKINAESVKIAQESRWY
                     PMMAATGLVTAIAAVLALIFKFA"
     gene            complement(1040..1612)
                     /locus_tag="ACFM6C_001583"
     CDS             complement(1040..1612)
                     /locus_tag="ACFM6C_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HFC6159018.1"
                     /translation="MGKPGKSSRPSALLSARWQDIDLTARLWHIPAADMKTKHPFTVP
                     LSDWAVEILRELHTQTGDNIHLFPGIRPRRKPAPHPDHISIKFAHNAIRRLGYDGSTP
                     GKSKHTMHGFRHLFTNISLTAGKDTLTTDLALGHISRAALQRAGFSSLHHYLTADSYR
                     LQERRELAEWYSRRHRQAYEAAAQNTCNKT"
     gene            complement(1587..1931)
                     /locus_tag="ACFM6C_001584"
                     /pseudo
     CDS             complement(1587..1931)
                     /locus_tag="ACFM6C_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003701232.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
     gene            complement(1924..2799)
                     /locus_tag="ACFM6C_001585"
     CDS             complement(1924..2799)
                     /locus_tag="ACFM6C_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3102 domain-containing protein"
                     /protein_id="HFC6159019.1"
                     /translation="MNTEIEIIATDKVSNQAAMRSVLVMEQWGNGETYSEERWVERGR
                     QAVRQTMEGMFELGRALIILKEHTEHGRFMEIVKSQFGLGIAETSRLMSATRRFATPQ
                     MQKAAPKLMDLGKSKLLELLVEEDVTLVGLAEGEEVNGMTFDDVDRMTVRELRVALRE
                     SRENLAAKDEVMKTKTAKIDELAEKLAKKQTVVREPKAEDVGSELAMQLTSLEVGIRS
                     QVSRLKDLFDQLNAHSEAHGISHQAKMVGTLNQIILDCEQLRESYALPTEAPTDNVPE
                     WLGGETGEGDESGND"
     gene            complement(2844..3134)
                     /locus_tag="ACFM6C_001586"
     CDS             complement(2844..3134)
                     /locus_tag="ACFM6C_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HFC6159020.1"
                     /translation="MAESKRVQRLLRVFIALDEHPIIGLSNKDLSVGLGLTPSQVSRD
                     IDDLVASGLVIKLENGNYAYGIKTLQIAERFRQQHERLQSKIAEIGKRVDVD"
     gene            complement(3146..3349)
                     /locus_tag="ACFM6C_001587"
     CDS             complement(3146..3349)
                     /locus_tag="ACFM6C_001587"
                     /inference="COORDINATES: protein motif:HMM:TIGR04111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HFC6159021.1"
                     /translation="MLSQWERAIYGYTVEKLKENFAQNGQTLAQWARENGFKPRDVYL
                     VVGGQRKGNYGKGHEIAKKLGLK"
     gene            3439..3816
                     /locus_tag="ACFM6C_001588"
     CDS             3439..3816
                     /locus_tag="ACFM6C_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6159022.1"
                     /translation="MISKSLFGNRLKEKRKFLGLTQAQAAEKAGIERETWGKYERGVF
                     MPSGDVLLSFLNMGIDVSSLFAAEQGIRPSENSEISKEESELLGYYRQASDNGKFVIL
                     SVAKGAEKKAAENTQVSATHKTA"
     gene            3845..4090
                     /locus_tag="ACFM6C_001589"
     CDS             3845..4090
                     /locus_tag="ACFM6C_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159023.1"
                     /translation="MFDFEQQIKWGERAEEIVKEAATQNNIEIPEPLASALAKAVKVH
                     YLSQAGVFSLVEAYADTVNPTEKEVDYQAIGKELFEK"
     gene            4324..4473
                     /locus_tag="ACFM6C_001590"
     CDS             4324..4473
                     /locus_tag="ACFM6C_001590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159024.1"
                     /translation="MAKKTTKTIHYLRAQQNHSLFDLEVALRRVLSAAPTVQDTQIEQ
                     YNQLT"
     gene            4489..5292
                     /locus_tag="ACFM6C_001591"
     CDS             4489..5292
                     /locus_tag="ACFM6C_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159025.1"
                     /translation="MDPKDVKGNSIGGLLIHIGSGTKDEHIRTMSNRPVQQDDHGGTQ
                     APPSGYSFLRKEAFLYIVGHHVIFCGHGFLSASTVASYLSLLSNKLRENNPDIVQFNI
                     EFKAVGNCDKLSLIQQHGVKSILLDASAYQLSRNRLYQDSRSTIAKALGKVGSVFTSE
                     LSDEELEAQSEIHINLEVLLNGNSRASIEAQSLMQEQAEEIIDDETVNQGFSITTQQG
                     EVIQPSDVKLSKSVRIGRYDEANSLLPDSAFTAISEYFLELQSRNLTEQ"
     gene            5289..5771
                     /locus_tag="ACFM6C_001592"
     CDS             5289..5771
                     /locus_tag="ACFM6C_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159026.1"
                     /translation="MKKYLPLLRFLLIACISAFLAWKGQPFVHGNEKAVDLIINVFAI
                     LAGFLIAIMTLFSDMRFDEDANWRQIQIREGVQEQRYIKHSLLFYTYLAVLVCVFIVI
                     LLAHKEEYKNGPAIFWLERSYLFLACISIFYSVFLPGNLIKSRKEEFKKLMEKKKPKI
                     "
     gene            5861..>6071
                     /locus_tag="ACFM6C_001593"
     CDS             5861..>6071
                     /locus_tag="ACFM6C_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase 108 family protein"
                     /protein_id="HFC6159027.1"
                     /translation="MSDKFNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGY
                     NGSMRAMTREQAIRDLCKIPFPPDSR"
BASE COUNT         1459 a         1388 c         1503 g         1721 t
ORIGIN      
        1 tatttggggc gaaaacagct gaaaacctgt gtttgggttt cggctgtcgg gagggaaagg
       61 aattttgcaa aggtctcaga gtgagtttat tttggggcgg cggcaggtcg ggggcaagcg
      121 gcgtggggct tggttgtggt ttttaggttt gggggtgggt aaaaaatgcc gtacccggcg
      181 ggcaggcttc gcactctgaa ggtttcagac ggcgtttgtt ttttctgtcc aatcgaggaa
      241 ctgccgccat ttttccagcg gcatatcggc ccgccgcgtt tcggtatcgg gttcggcttc
      301 ccagcggcct acctgtatgt agtgcttcac cccgacgatt tgcgccaact cggcctgtgt
      361 cagtttgcag cggttgcgca gggtgcgaag gttgtaaggc gtgtagccga gttccatgtc
      421 gttgcggttt attttgtttc gcatattttt ttgactgccc ggcggcaggt ttcggtaagg
      481 acggcggcaa atcgggcttc gtctgccggt tttccgtcga aaaaaataaa atcgtaaagg
      541 gtgatgccgt tttcggaatg gcggtaatgc ccgcccgggc attcgctgtc tgtctgcctg
      601 tggattttgg caatcaggcg gggatagcgg caatgggtaa tgaaacggct tgcgccgtct
      661 tgcccgataa tccattcggg gtagcggttg aatagtgcgg ctctgttcat tttgttcggg
      721 ttgttcgggg gataaagccc ctcgcggggc ttgtggtcag gcaaatttga atatcagtgc
      781 caacacggcg gcgatggcgg taaccagccc ggtggccgcc atcatgggat accatcggga
      841 ttcttgggct atttttacgg attcggcgtt gattttgtgc gcgtctgcaa tgattttggc
      901 gatttcggca tctacttttc tcagactgga gtgtttcatt tcttgttcga ttatgttcat
      961 cgtacttcct ttcgtttttg gcggttgccg ccgcttgtcg gatggtagga tgtctgccat
     1021 gtgtatatat tgataccttt taggttttat tgcaagtgtt ttgggcggcg gcttcgtatg
     1081 cttggcggtg gcggcggctg taccattcgg cgagttcgcg ccgctcttgg aggcggtagc
     1141 tgtcggcggt caggtagtgg tgcaggcttg agaagccggc gcgttggagg gcggcgcggc
     1201 tgatgtggcc gagggcgagg tctgttgtga gggtgtcttt tccggcggtc aggctgatgt
     1261 tggtgaagag gtggcggaat ccgtgcattg tgtgtttgga tttgccgggg gtgctgccgt
     1321 catagcccag tcgtcggatg gcgttgtggg cgaatttgat gctgatgtgg tcgggatggg
     1381 gggcgggttt gcgccgtggg cggatgccgg ggaaaaggtg gatgttgtcg ccggtctgtg
     1441 tgtgcagctc tcggagtatt tctaccgccc agtccgacag tgggacggta aaggggtgtt
     1501 tggtcttcat gtcggcggcg gggatgtgcc ataaccgggc ggtgaggtcg atgtcttgcc
     1561 agcgggcgga aagcagtgcg gagggacggg atgacttccc cggtttcccc atcaatccgc
     1621 gccgcctcga tttttccgtt ggcgcgcagc atttccaccg cctgccgcac cgacatcaac
     1681 cgcttgccgt tgcgcctcat cgcctccacc aaaaccgccg aaatcaattt ggcttcttcc
     1741 ggtttaagct ccgtcttgcc cgcatcgctg cgccgtttgc gcgtcggctt gacgctgacc
     1801 gcctccagct tgcggtataa cgtggcaagg ctgatgccca attcctgcgc ctgctgctta
     1861 agatatgcag agcgtgcgcc gcgttccatt gcttccgcct gattctcgac tgccttaaga
     1921 cgctcaatca ttgccggatt catcgccttc tcccgtttca ccgcccaacc attccggcac
     1981 attgtctgtc ggtgcttcag tcggcagggc atagctttcg cgcagttgct cgcagtccaa
     2041 aataatttga ttgagcgtgc cgaccatctt tgcctgatgg ctgatcccgt gtgcctcact
     2101 gtgcgcatta agttggtcga acaaatcttt cagacggctc acttgactgc ggataccgac
     2161 ctcaaggctt gttaactgca tcgccaactc gctgcctacg tcttccgcct tcggctctct
     2221 gacaacggtt tgcttcttag ccagcttctc ggccagctca tcaattttgg ctgttttggt
     2281 tttcatcact tcgtctttgg cggcgaggtt ttcgcggctt tcgcgcaggg cgacgcgcag
     2341 ctcgcgcacc gtcattcggt ccacatcgtc aaaggtcatg ccgttgactt cttccccttc
     2401 ggccaaaccc accagcgtaa cgtcttcttc gaccagcagc tcaagcagct tcgacttgcc
     2461 caaatccatc agcttcggcg cggctttctg catttgcggg gtcgcaaagc ggcgagtggc
     2521 tgacatcaga cgtgatgttt ctgcgatacc cagcccaaat tggcttttca caatttccat
     2581 aaaccgtccg tgttccgtat gctcttttaa aataatcagc gcacgtccca gttcgaacat
     2641 gccttccatc gtctgccgta ctgcttgacg accgcgttca acccaacgct cttcgctata
     2701 agtctcgccg ttaccccact gctccatcac cagcacactg cgcatcgctg cctgattgct
     2761 tactttgtcg gttgcgataa tttcaatttc tgtattcatt ttttatctcc aaagtttccg
     2821 acgtcggaaa ctttcaaaat ccgttaatcc acatcgaccc gcttgccgat ttcggcaatc
     2881 ttgctttgca gccgttcatg ctgctgcctg aaccgctctg cgatttgcag ggttttgatg
     2941 ccgtaggcgt agttgccgtt ttcaagtttg atgaccaatc ccgaggcaac caaatcatca
     3001 atatccctgc tgacttgcga tggcgtcagc cccagtccga ccgataaatc cttattgctc
     3061 agaccgataa tcggatgctc gtcaagcgcg ataaagaccc tcaatagccg ttgtaccctt
     3121 ttactttctg ccatccgcat cctccttatt tcagtcccag cttcttggca atttcatgcc
     3181 ccttgccgta attgcctttg cgctgtccgc cgaccaccag atacacatcg cgcggcttaa
     3241 agccgttctc tcttgcccac tgcgccagcg tttggccgtt ttgggcaaaa ttttctttta
     3301 gtttttcaac agtatagcca tagatagccc tttcccattg tgataaaata gtgaactatt
     3361 tatgcactag aaattaatta gtgcattacc aatgcgtgaa ttatgagatt ttaaaatctc
     3421 ttttacaagg attattttgt gatttctaaa tctctttttg gtaatcgttt gaaagaaaaa
     3481 agaaagtttt tagggcttac ccaagcacaa gctgctgaaa aagcaggtat tgagcgcgaa
     3541 acatggggca aatacgaacg tggcgtattt atgcctagtg gagatgtatt gctctctttt
     3601 ttgaatatgg gaatagatgt gagcagctta tttgctgctg aacagggaat taggccgtct
     3661 gaaaattctg aaattagtaa ggaagagtca gagttattag ggtattaccg ccaagccagc
     3721 gataacggca aatttgtcat tctcagtgtg gcaaaaggcg cagagaaaaa agcagccgaa
     3781 aatactcaag tttcagccac gcataaaaca gcgtgatttt taaatccaaa atggagacag
     3841 tcttatgttt gactttgaac aacaaatcaa atggggtgag cgagcggaag aaatcgttaa
     3901 agaggcagcc acccagaaca atatcgaaat tcccgaacct ttggcttcgg cattagctaa
     3961 ggcggtaaaa gtgcattatc taagccaagc tggtgtgttt tctttggtag aagcctatgc
     4021 agacacggta aatccaactg aaaaagaagt agattaccaa gcaatcggca aagagctatt
     4081 tgaaaaataa aaaatgccgt ctgaaatttt cagacggcat ttaggacact ccgacagtcg
     4141 ggctgctccg gtgttctgaa acggatatta agcaattgaa gcggccgtgc attttaaaac
     4201 gcattaaaaa ctaccccgac atacaggtca tcgggcaggt ggttcaggtg ttgaaagatt
     4261 tgaattgatg ccgtctgaat ttattttttc gacacagata ttaaaagaga aaggactgta
     4321 caaatggcaa aaaaaactac taaaactatt cattatttac gtgcgcagca aaaccatagc
     4381 ttgttcgatt tagaggtagc attaagaagg gttttgtcag ctgctcctac tgttcaagat
     4441 acacaaattg aacaatacaa tcagcttacc taaatcatgc atagaacttt ggatcctaaa
     4501 gatgtaaaag gcaattcaat tggtggatta ctgatacaca ttggcagcgg tacaaaagat
     4561 gaacatatcc gcactatgag caatagacct gtacagcaag atgatcatgg tggaacacaa
     4621 gctcctccaa gtggatattc ctttttgcgt aaagaggctt ttttgtatat tgttggacac
     4681 catgtaattt tttgcggaca tggttttttg tcagcatcaa cggttgcttc ttatttaagt
     4741 ttacttagca ataaattgag agagaacaat ccggatattg ttcaatttaa tattgaattc
     4801 aaagcagtag gcaattgcga caagttgtca ttgatacaac aacatggggt aaaaagtatt
     4861 cttttagatg cttcggcata tcaattatcc agaaacagac tgtatcaaga tagccgttca
     4921 accattgcta aagcattagg gaaagttggt agtgtattta caagcgaatt gagtgatgag
     4981 gaattggaag cacaatccga aattcatatc aatttagaag tcttgctaaa cggtaattcg
     5041 agagccagta ttgaagcgca atcgctgatg caggagcagg cagaggaaat tattgatgat
     5101 gaaacggtta atcaaggatt ttccattacc acgcaacaag gtgaagtgat tcagccctct
     5161 gatgtaaaac tgtctaaatc tgttagaata ggacgatacg atgaagccaa ctcgttactc
     5221 cctgactcgg catttacagc aatcagtgaa tatttcctag aactccaaag cagaaactta
     5281 actgaacaat gaaaaaatat ctgcccttac tacgtttttt gttgattgct tgtatatcag
     5341 catttttagc atggaaaggg caaccttttg ttcatgggaa cgagaaggcc gttgatttaa
     5401 ttattaacgt atttgcaatc ttagccggtt ttttaattgc cattatgaca ttgtttagtg
     5461 atatgaggtt tgatgaagat gcaaattggc gacaaattca aattcgtgaa ggcgtacaag
     5521 aacaacggta tataaaacat tccttacttt tttacacata tcttgccgta ttagtttgtg
     5581 tttttattgt catcttgttg gctcataaag aagaatacaa aaatggacca gccatttttt
     5641 ggcttgaacg gagctattta tttttagcct gtatttccat tttttattct gtattcttac
     5701 ctgggaattt aattaaaagc cgaaaagaag agtttaaaaa attaatggaa aagaagaaac
     5761 ccaaaatcta gaacgagttt taaccccctt taaaatccca ttcagacgac cttttctaaa
     5821 atccctgtat tgatttttaa ttcaatacag ggatttttcc atgtcagaca agttcaacca
     5881 attcatcaac cgcgtcctct ctcacgaggg tggttacgcc aaccatccca aagaccccgg
     5941 cggcgaaacc aattggggca tcactaagcg caccgcacag gcaaacggct acaacggctc
     6001 catgcgtgcc atgacgcgtg aacaggcaat cagagacctt tgcaaaattc ctttccctcc
     6061 cgacagccga a
//
LOCUS       DAXHPV010000120         6028 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.120, whole genome shotgun sequence.
ACCESSION   DAXHPV010000120 DAXHPV010000000
VERSION     DAXHPV010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6028)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6028)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6028
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.120"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            164..1276
                     /gene="nadA"
                     /locus_tag="ACFM6C_001594"
     CDS             164..1276
                     /gene="nadA"
                     /locus_tag="ACFM6C_001594"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HFC6159028.1"
                     /translation="MQTAARRSFDYDMPLIQTPTSACQIRQAWAKVADTPDRETADRL
                     KDEIKALLKEKNAVLVAHYYVDPLIQDLALETGGCVGDSLEMARFGAEHEAGTLVVAG
                     VRFMGESAKILCPEKTVLMPDLEAECSLDLGCPEEAFSAFCDQHPDRTVVVYANTSAA
                     VKARADWVVTSSVALEIVSYLKSRGEKLIWGPDRHLGDYIRRETGADMLLWQGSCIVH
                     NEFKGQELAALKAEHPDAVVLVHPESPQSVIELGDVVGSTSKLLKAAVSRPEKKFIVA
                     TDLGILHEMQKQAPDKEFIAAPTAGNGGSCKSCAFCPWMAMNSLGGIKYALTSGRNEI
                     LLDRKLGEAAKLPLQRMLDFAAGLKRGDVFNGMGPA"
     gene            1328..2836
                     /gene="nadB"
                     /locus_tag="ACFM6C_001595"
     CDS             1328..2836
                     /gene="nadB"
                     /locus_tag="ACFM6C_001595"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008734 - L-aspartate oxidase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HFC6159029.1"
                     /translation="MQTDCDVLIAGNGLAALTLALSLPESFRIVILCKNRLDDTASRH
                     AQGGIAAAWSGEDDIEKHVADTLEASAGLCDEAAVRTILSQGKPAIEWLLAQGVAFDR
                     NYDGLHLTREGGHTCRRIAHVADYTGEAVMQSLLAQIRRRPHIRVCERQMALDIQTES
                     GVACGLIVLDRRTQETYLIRARHTVLAGGGLGQIYAATTTPPECTGDAIAMAIRAGCA
                     VENLEFIQFHPTGLARSSENGRTFLISEAVRGEGGILTNQAGERFMPHYDRRAELAPR
                     DIVARAIAAEIAKQTPDFVSLDISRQPEAFVRRHFPSIHRHCLSQCGLDITRQAIPVR
                     PVQHYTCGGIQTDPCGRTSLPQLYALGETACTGLHGANRLASNSLLECVVTARLAAQT
                     IADGQAFQAKTSPRPSENPSAEAGIFADDLQNTFSRPVLQTFNQRHLGILRSDTGLRR
                     AIAQLRLWKQNQAEPHTASEYENRNLLECSLAVAQAAYRRRQNIGAHFNSDC"
     gene            complement(3012..3677)
                     /gene="pgmB"
                     /locus_tag="ACFM6C_001596"
     CDS             complement(3012..3677)
                     /gene="pgmB"
                     /locus_tag="ACFM6C_001596"
                     /EC_number="5.4.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008801 - beta-phosphoglucomutase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-phosphoglucomutase"
                     /protein_id="HFC6159030.1"
                     /translation="MTFTAVLFDLDGVITDTAEYHYRAWKKLAEELGIGIDRKFNEQL
                     KGVSRDDSLKRILAHGGKTVGEAEFAELTRRKNDNYVEMIQAVKPEDVYLGILPLLEA
                     LKANGKKIALASASKNGPFLLERMGLTHFFDTVADPAAVAHSKPAPDIFLAAAEGVGA
                     DIRRCIGIEDAAAGVAAIKAAGALPIGVGKAEDLGSDIALVSDTAELTYAYLQNVWAQ
                     SGR"
     gene            complement(3689..5947)
                     /locus_tag="ACFM6C_001597"
     CDS             complement(3689..5947)
                     /locus_tag="ACFM6C_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 65 protein"
                     /protein_id="HFC6159031.1"
                     /translation="MYTRIMEISPWTLRSAKLEKEHKRLQESLTSLGNGYMGMRGSFE
                     ETYSADSHLGTYIAGVWFPDKTRVGWWKNGYPKYFGKAINALNFSKVKIFVDGQEVDL
                     AKNDVAGFSVELDMQHGVLRRSFTVFGVRFDVCKFLSVAQKELALIRWEAVSVDGKTH
                     QVRIDSIIDADVKNEDSNYEEKFWQVLDKGVSDSLSYIAAQTVANPFGVEQFIVNAEQ
                     TFAGSFKALGGRQTDWQVSNSFEAEVGGTPETFEKRVIVTTSRDYQGLEAVKAAGRAL
                     SEKIAGVAFETLLDAHKAGWLHRWEIADVVIEGSDEAQQGIRFNLFQLFSTYYGEDAR
                     LNIGPKGFTGEKYGGATYWDTEAYAVPLYLALAEPEVTRNLLQYRRNQLPQAQHNARE
                     QGLAGALYPMVTFTGIECHNEWEITFEEIHRNGAIPYAIYNYTNYTGDESYLAKEGLE
                     VLVEVSRFWADRVHFSKRRGKYMIHGVTGPNEYENNINNNWYTNTLAAWVLDYTREAL
                     AKYPRPDLNVRAAELEKWADISANMYRPHDEELGVFVQHDGFLDKDIRPVSALSPDDL
                     PLNQKWSWDKILRSPFIKQADVLQGIYFFGDRFNMDEKRRNFDFYEPMTVHESSLSPC
                     IHAILAAELGKEEKAVEMYQRTARLDLDNYNNDTEDGLHITSMTGSWLAIVQGFAQMK
                     TWGGTLSFAPFLPSAWTGYAFHINYRGRLIKVAVGKENVVFTLLKGEPLELQVYGKDI
                     TLNGSHTVTLEK"
BASE COUNT         1253 a         1688 c         1756 g         1331 t
ORIGIN      
        1 caaagcggtt tgtcggaacg aagcgggtcg gttttacggt atcgcaaacc tgttttcaga
       61 cgaccttgct tattatactc aatttgagca taatataaaa atatttcaaa atataaacgg
      121 caaatcttta tgccgtctga aaaaccagcc ataaggaagt ctcatgcaaa ccgccgcccg
      181 ccgctcgttc gattacgata tgcccctcat ccaaaccccg acttccgcct gccaaatccg
      241 tcaggcgtgg gcgaaggttg ccgacacgcc cgaccgcgag acggcagatc gtctgaaaga
      301 cgaaatcaag gctttgctga aggagaaaaa cgcggtcttg gtggcgcatt attatgttga
      361 tccgctgatt caggatttgg ctttggaaac gggcggatgc gtgggcgatt ctctggaaat
      421 ggcacgcttc ggcgcggaac acgaagccgg tacgctggtg gtggcgggcg tgcgtttcat
      481 gggagagagc gcgaaaatcc tctgccctga aaaaacggtg ctgatgcctg atttggaagc
      541 ggaatgttct ttggatttgg gttgcccgga agaggcgttt tcggcgtttt gcgaccaaca
      601 ccccgaccgc acggtggtgg tgtacgccaa cacttccgcc gccgtgaaag cgcgtgccga
      661 ttgggtggta acgtcttcgg tggcgttgga aatcgtgtcg tatctgaaat cgcgcggcga
      721 gaagctgatt tgggggcccg accgccacct cggcgactac atccgccgcg aaacgggcgc
      781 ggatatgctg ttgtggcagg gttcgtgcat cgtccacaac gaatttaaag ggcaggagct
      841 ggcggcgttg aaggcggaac accccgatgc ggtggtgctg gttcatcccg aatcgccaca
      901 aagcgtcatc gaactgggcg acgtggtcgg ctcgaccagc aaactgctga aagctgccgt
      961 atcacgcccc gaaaaaaaat tcatcgtggc gaccgatttg ggcatcctgc acgaaatgca
     1021 aaagcaggcg cccgacaaag aatttatcgc cgcgccgacg gcgggcaacg gcggaagttg
     1081 caaaagctgc gcgttctgcc cgtggatggc gatgaattcg ctgggcggca tcaaatacgc
     1141 cctgacaagc ggacgtaacg aaatcctgtt ggacaggaag ctgggcgaag ccgccaaact
     1201 gcctttgcag cgtatgctcg acttcgcggc aggactcaaa cgcggggatg tgttcaacgg
     1261 catggggccc gcctgatttg ccgtccatat tgccgtttca gacgacctct ccaacaagga
     1321 caacaccatg caaaccgatt gcgacgtatt gattgccgga aacgggctgg cggcactgac
     1381 gctcgccctg tcgctgcctg aatcgttccg catcgtcatt ttgtgcaaaa accggctgga
     1441 cgacaccgcc agccgtcatg cgcaaggcgg gattgcggcg gcgtggtcgg gagaggacga
     1501 catcgaaaaa cacgtcgccg atactttgga agcgagcgca ggtttgtgcg acgaagccgc
     1561 cgtccgcacc atcctgtcgc agggcaaacc ggcaatcgaa tggctgctgg cgcagggcgt
     1621 ggcgttcgac cgaaattatg acggcctgca cctgacgcgc gaaggcgggc acacctgccg
     1681 ccgaatcgcc cacgtcgccg actacacggg cgaagccgtc atgcagagcc tgcttgccca
     1741 aatacgccgc cgcccgcaca tccgcgtttg cgagcggcag atggcgttgg acattcaaac
     1801 cgaatcaggt gtggcgtgcg gactgatcgt ccttgaccgc cgaacgcaag aaacctacct
     1861 catccgcgcc cgccataccg tactcgcagg cggcggcttg ggacagattt acgccgccac
     1921 caccacgccg cccgaatgca cgggcgacgc catcgccatg gcgatacgcg caggctgtgc
     1981 agttgagaac ctcgaattta tccaattcca ccccacaggc ttggcaagat cgtctgaaaa
     2041 cggccgtacc ttcctgattt ccgaagccgt gcgcggcgaa ggcggcatcc tgaccaacca
     2101 agcgggcgaa cggtttatgc cgcattacga ccgccgcgcc gaactcgcgc cgcgcgacat
     2161 cgttgcccgc gccatcgccg ccgaaatcgc caaacaaact ccagacttcg tctcgctcga
     2221 catcagccgc caacccgaag cgttcgtccg ccggcatttt ccgtccatcc atcggcactg
     2281 tttatcccaa tgcggcctgg acatcacgcg ccaagccatc cccgtccgcc ccgtgcaaca
     2341 ctacacctgc ggcggcatcc aaaccgaccc ctgcggcaga acctccctgc cgcagctcta
     2401 cgccttaggc gaaaccgcct gcaccggctt gcacggagcc aaccgcctcg ccagcaactc
     2461 cctgctcgaa tgtgtcgtta ccgccagact tgccgcccaa accatcgcgg acggacaagc
     2521 attccaagcc aaaacgtctc caaggccgtc tgaaaacccc tccgccgaag caggcatctt
     2581 tgcagacgac cttcaaaaca cattcagccg ccccgtcctg caaacgttca accaacgcca
     2641 tctcggcatc ctacgcagcg ataccggcct gcgccgcgcc atcgcccaac tgcggctttg
     2701 gaagcaaaac caagccgaac cgcacaccgc gtccgaatac gaaaaccgca acctgctcga
     2761 atgcagcctc gccgtcgccc aagccgcata caggcggaga cagaacatcg gcgcgcattt
     2821 taatagtgat tgttaaggtt ggctggttag aaaaaatcgt tcaaatgaat tttaatagca
     2881 tggttaagag attggcattc agtttttagg gttgcgtaag ttgggttatc aatctgttct
     2941 aaaagcagaa aggccgtctg aaacactgtt cagacggcct tttacttcct tgacacttta
     3001 tctgacgcgt tttacctgcc cgactgtgcc cacacgtttt gcaggtaggc gtaggtcagc
     3061 tcggcggtat cggacaccag cgcgatgtcg ctgcccaagt cttcggcttt gcccacgccg
     3121 ataggcaagg cgccggcggc tttgatggcg gcgacacctg cggcagcgtc ttcaatgccg
     3181 atgcagcggc ggatgtccgc gcccacgccc tcggcggcgg cgaggaagat gtcgggggcg
     3241 ggtttggaat gcgcgacggc ggcagggtcg gcgacggtgt cgaagaagtg ggtcagcccc
     3301 atgcgttcga gcaggaaggg gccgttttta ctggcggacg caagggcgat ttttttgccg
     3361 tttgctttta atgcttccag cagcggcaaa atgccgagat acacgtcttc gggtttgact
     3421 gcctgaatca tctcgacgta gttgtcgttt ttgcggcggg tcagttcggc gaactcggct
     3481 tcgccgacgg ttttgccgcc gtgtgcgagg atgcgtttga gcgaatcgtc gcgcgacacg
     3541 cctttgagct gctcgttaaa cttgcggtct atgccgatgc ccagttcttc ggcgagcttt
     3601 ttccatgcgc ggtagtggta ttcggcggtg tcggtgatga cgccgtcgag atcgaagagc
     3661 actgcggtaa acgtcatttt gcgccccctt atttttccaa cgtgacggta tggctgccgt
     3721 tgagcgtgat gtctttgccg tacacctgca attcgagcgg ttcgcctttg agcagggtga
     3781 agacgacgtt ttctttgccg acggcgactt taatcagacg gcctcggtag ttgatgtgga
     3841 aggcgtagcc tgtccacgca ctcggcagga acggtgcgaa gctgagtgtg ccgccccaag
     3901 ttttcatttg ggcgaaacct tggacgatgg cgagccacga gccggtcatg gaggtaatgt
     3961 gcaggccgtc ttcggtgtcg ttattgtagt tgtccaagtc cagacgggcg gtgcgctggt
     4021 acatttccac ggctttttct tctttgccca gttcggcggc aaggatggca tgaatacacg
     4081 gcgacaacga gctttcatgc acggtcatcg gttcgtagaa gtcgaagttg cgacgttttt
     4141 cgtccatatt gaaacggtcg ccgaagaagt agatgccttg caagacgtcc gcctgtttga
     4201 tgaagggcga acgcaggatt ttgtcccacg accatttctg gttgagcggc aaatcgtcgg
     4261 gcgaaagcgc ggacactggg cggatgtctt tatcaaggaa gccgtcgtgt tggacgaata
     4321 cgccgagttc ttcgtcatga ggacggtaca tattcgcgct gatgtccgcc catttttcca
     4381 actcggcggc acgcacgttc aaatccggac gcgggtattt cgccaaggct tcgcgggtgt
     4441 agtccaatac ccaagcggca agggtgttgg tgtaccagtt gttgttgatg ttgttttcgt
     4501 attcgttcgg gccggttacg ccgtgaatca tgtatttacc cctgcgtttg gagaagtgga
     4561 cgcggtccgc ccagaagcgg gacacttcga ccaagacttc caagccttct ttggcaagat
     4621 agctttcgtc gccggtgtag ttggtgtagt tgtagatggc gtaaggaatc gcgccgttgc
     4681 ggtggatttc ctcgaaggtg atttcccatt cgttgtggca ctcgatgccc gtaaacgtta
     4741 ccatcggata gagtgcgccc gccaagccct gttcgcgcgc gttgtgctgc gcctgcggca
     4801 gttggttgcg gcggtattgc agcaggttgc gggtaacttc gggttccgcc agtgcgaggt
     4861 aaagcggcac ggcgtaggct tcggtgtccc aataggtcgc gccgccgtat ttttcgccgg
     4921 taaagccttt cgggccgatg ttcaggcgcg cgtcttcgcc gtagtaggtg gagaacagtt
     4981 ggaacaggtt gaagcggatg ccctgctgcg cttcgtcgct gccttcgatg accacgtcgg
     5041 cgatttccca acggtgcagc cagcctgctt tgtgcgcgtc cagcaaggtt tcaaacgcaa
     5101 cgcctgcgat tttttccgac aaggcgcggc ctgcggcttt cactgcttcc aagccctgat
     5161 aatcgcggct ggtggtaaca atcacgcgtt tttcaaaggt ttcgggcgtg ccaccgactt
     5221 cggcttcaaa agaattggag acctgccagt cggtttgtct gccgccgagg gctttaaagc
     5281 tgccggcgaa ggtttgctcg gcgttgacga taaattgttc cacgccgaaa gggttggcaa
     5341 cggtttgggc ggcaatgtag gagagactgt ctgaaacgcc tttgtccaat acctgccaga
     5401 atttttcttc gtagttggag tcttcgtttt tcacgtcggc atcgatgatg gaatcgatgc
     5461 ggacttggtg ggttttgccg tcaacggata cggcttccca gcggatgaga gccagctctt
     5521 tttgtgcgac ggacaggaat ttgcacacat cgaaacgcac gccgaatacg gtgaacgagc
     5581 ggcgcaacac gccgtgctgc atatcgagtt cgacggagaa gccggcaaca tcgtttttcg
     5641 ccaagtccac ctcttgacca tcgacaaaga ttttgacttt gctgaaattg agcgcgttga
     5701 tggctttgcc gaaatatttg gggtagccgt ttttccacca gccgacgcgg gttttgtcgg
     5761 gaaaccacac accggcgatg taggtaccca agtggctgtc ggcggaatag gtttcctcaa
     5821 agctgccgcg catacccata tagccgttgc ccaaactggt caggctctct tgcagccgtt
     5881 tgtgttcttt ttccagcttt gccgaacgca gcgtccaagg gctgatttcc ataattcttg
     5941 tgtacattta tgaagctcct gtttggattg atttgaggga atggtgaaat cttatagtgg
     6001 attaacaaaa atcaggacaa ggcgacga
//
LOCUS       DAXHPV010000121         5980 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.121, whole genome shotgun sequence.
ACCESSION   DAXHPV010000121 DAXHPV010000000
VERSION     DAXHPV010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5980)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5980)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5980
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.121"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(45..968)
                     /gene="truB"
                     /locus_tag="ACFM6C_001598"
     CDS             complement(45..968)
                     /gene="truB"
                     /locus_tag="ACFM6C_001598"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HFC6159032.1"
                     /translation="MNTGKPQKRAVNGVLLLDKPEGLSSNTALQKARRLFRAEKAGHT
                     GVLDPLATGLLPVCFGEATKFAQYLLDADKAYTATLKLGEASSTGDAEGEIIAAARAD
                     ISLAEFQTACQALTGNIRQVPPMFSALKHEGKPLYEYARKGIVIERKARDITVYAIDI
                     AEFDSPKAVIDVRCSKGTYIRTLSEDIAKHIGTFAHLTALRRTETAGFTIAQSHTLEA
                     LANLDETERDSLLLPCDVLVAHFPQTVLNDYAVHMLQCGQRPRFEENLPFNTPVRVYT
                     ENGRFVGLAEYQKEICRLKALRLMNTAASAA"
     gene            complement(1001..1372)
                     /gene="rbfA"
                     /locus_tag="ACFM6C_001599"
     CDS             complement(1001..1372)
                     /gene="rbfA"
                     /locus_tag="ACFM6C_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HFC6159033.1"
                     /translation="MRKPQRGYARQDRVKEQIMRELAELVRTGLKDPRAGFITVNEVE
                     VTRDYSHATVFYTILNQDAREITEEVLEHARGHLRSELAKRIKLFKIPELHFKYDESL
                     ERGLNLSALIDQVAAEKPVED"
     gene            1563..2807
                     /gene="clpX"
                     /locus_tag="ACFM6C_001600"
     CDS             1563..2807
                     /gene="clpX"
                     /locus_tag="ACFM6C_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HFC6159034.1"
                     /translation="MSNENRTCSFCGKSKSHVKHLIEGENAFICDECVSNCIEILHED
                     GNDGTPSESAGGEPEESGKLPTPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHP
                     KAGANVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQ
                     IITKLLGKCDFDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT
                     VASVPPQGGRKHPNQEFINVDTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSK
                     DENADITKLFGIVEPEDLIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVK
                     QYQALFGMENVELEFEEGALRSIAWQAMERKTGARGLRSIVERCLLDTMYRLPDLQGL
                     KKVVVGKAVIEEGKEPELVFES"
     gene            complement(2872..4065)
                     /locus_tag="ACFM6C_001601"
     CDS             complement(2872..4065)
                     /locus_tag="ACFM6C_001601"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HFC6159035.1"
                     /translation="MQNYLTPNFAFAPMIPERASGSRVWDTEGREYIDFSGGIAVNAL
                     GHCHPALVDALNAQMHKLWHISNIYTTRPAQELAQKLVANSFADKVFFCNSGAEANEA
                     ALKLARKYARDRFGGGKSEIVACINSFHGRTLFTVSVGGQPKYSKDYAPLPQGITHVP
                     FNDIAALEAAVGEQTCAVIIEPIQGESGILPATAEYLQTARRLCDRHNALLILDEVQT
                     GMGHTGRLFAYEHYGIVPDILSSAKALGCGFPIGAMLATEKIAAAFQPGTHGSTFGGN
                     PMACAVGSRAFDIINTPETLNHVREQGQKLQTALLDLGRKTGLFSQVRGMGLLLGCVL
                     DEAYRGRASEITAAALKHGVMILVAGADVLRFAPSLLLDDEDTAEGLRRLEHVLTEFA
                     AANRP"
     gene            4469..4969
                     /locus_tag="ACFM6C_001602"
     CDS             4469..4969
                     /locus_tag="ACFM6C_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159036.1"
                     /translation="MNAMPQTAAQNETLHICSIIVDDAQDFSPMLLDAGRDDTLISES
                     MIPQIRTVAALIAAERHDFSRSSPAEFTDAADFFAARILVLGVRRFHLDVSLLQILKT
                     ANSRARRFAEKHRLFFTPAQAELSLNKHKNRRLLTVETEHEVENKGNPVANSLAFVRK
                     LHTLPL"
     gene            5054..5608
                     /locus_tag="ACFM6C_001603"
     CDS             5054..5608
                     /locus_tag="ACFM6C_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159037.1"
                     /translation="MKKIIASALIATFALAACQDDTQARLEQQQKQIEALQQQLAQQA
                     DDTVYQLTPEAVKDTIPAEAQANGNNGQPVTGKDGQQYIYDQSTGSWLLQSLVGAAAG
                     AFIGNALANKFTRAGNQDSPVARRARAAYHQSARPNARTSRDLNTRSLRAKQQAAQAQ
                     RYRPTTRPPANYRRPAMRGFGRRR"
     gene            5622..5891
                     /locus_tag="ACFM6C_001604"
     CDS             5622..5891
                     /locus_tag="ACFM6C_001604"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159038.1"
                     /translation="MPSEELSDGIFAFVRDIVMLPFDFQTAFCFQAFDVGMAILNLRA
                     LAGRHCHAAVGFSDGIISNSQAVGRAFLPTVARAGFGGQECPPCI"
BASE COUNT         1413 a         1602 c         1625 g         1340 t
ORIGIN      
        1 tatcaacaca ttattcaaac acagcccgta tttttaaccg ccgttcaggc ggcggatgcc
       61 gccgtgttca tcaggcgcaa ggcttttaga cggcatattt ccttttgata ttccgccagg
      121 ccgacaaagc ggccgttttc cgtgtaaacg cgtaccggcg tgttgaaagg caggttttcc
      181 tcgaaacgcg gtcgttgccc gcattggagc atatggacgg cataatcgtt taaaacggtt
      241 tggggaaaat gggcaaccaa tacgtcgcag ggcagcagca ggctgtcgcg ttctgtttcg
      301 tccaagtttg ccaaggcttc gagcgtgtgg ctttgggcga tggtaaagcc ggcggtttcg
      361 gtgcggcgca gggcggtcag gtgggcgaac gtgccgatgt gtttggcgat gtcttcgctg
      421 agggtgcgga tataggtgcc tttgctgcaa cgcacgtcga tgacggcttt gggtgagtca
      481 aactcggcaa tatcgatggc gtaaacggta atgtcgcgcg ccttgcgttc gatgacgatg
      541 cctttgcggg cgtattcgta cagcggtttg ccttcgtgct tgagggcgga aaacatcggc
      601 ggcacttggc ggatgttgcc tgtcagggct tggcaggccg tctgaaattc ggctaaggaa
      661 atatcggcgc gtgcggcagc gatgatttcg ccttcggcat cacccgtgct gctggcttcg
      721 ccgagtttca gcgtggcggt gtaggctttg tcggcatcca gcaggtattg ggcgaacttg
      781 gtcgcttcgc cgaagcagac gggcaaaagc ccggttgcca aagggtcgag cacgccggta
      841 tgtccggctt tttcggcacg gaacaaacgc cgcgcttttt gcagcgcggt gttgctggaa
      901 aggccttcgg gtttgtccaa gagcaaaaca ccgttgacgg cacgtttttg gggtttgcct
      961 gtattcatgg ttcgatgttc ggacggcatg ggcatatccg tcagtcttca accggttttt
     1021 ccgccgctac ttggtcgata agggcggaca ggttcaaacc gcgttccaag gattcgtcgt
     1081 atttgaaatg cagttcgggg attttgaaca gcttgatgcg tttggccaat tcgctgcgga
     1141 ggtgtccgcg cgcgtgttcc agcacttctt ccgtaatttc gcgcgcgtct tggtttaaaa
     1201 tggtgtagaa cacggtggcg tggctgtaat cgcgggtaac ttcgacttcg ttgacggtaa
     1261 tgaagccggc gcgcgggtct ttcagtccgg tacggacgag ttcggcaagc tcgcgcataa
     1321 tttgttcttt gacacggtct tggcgggcat agccgcgttg gggttttctc atgaatatcc
     1381 tcagatttca gatttggttt cagacggcat ttttgccgcc ggggcggttg cgaaagggcg
     1441 tattatagcc taatcggcgg gattttaagg taatacattg ataagaacgg atatagttat
     1501 tatacttggc aacccgaacg gcacgtgccg ttttctgtaa cgcatacatt gtaaagaaag
     1561 ccatgtccaa cgaaaaccgt acctgttcct tttgcggaaa atccaaatca cacgtcaaac
     1621 atttaattga gggcgaaaac gcctttatct gtgacgaatg cgtctcaaac tgtattgaaa
     1681 tattgcatga agacggaaat gacggcacgc cttcggaaag tgccggaggg gagccggaag
     1741 aatccggcaa gctgcccacg cccgccgaaa tcgtcgccaa cctcaacgac cacgttatcg
     1801 gtcaggaaca agccaagaaa gccttggcgg tgtcggtgta caaccattac aaacgcctgc
     1861 gccacccgaa agccggagct aatgtcgaat tgtcgaaatc caacatcctg cttatcggcc
     1921 cgaccggatc gggtaaaacc ctgctggcgc aatctttggc gcgcaaactg gatgtgccgt
     1981 tcgtgatggc agatgcaacc acgctgaccg aagcaggtta tgtcggcgaa gatgtcgaac
     2041 agattattac caaactgttg ggcaaatgtg atttcgatgt cgaaaaagcc caacgcggca
     2101 tcgtctatat cgacgaaatc gataaaattt cacgcaaaag cgacaatccg tccatcacgc
     2161 gtgacgtgtc cggcgaaggc gtgcaacaag ccttgctgaa actgattgaa ggtacggtgg
     2221 ccagcgttcc gccccaaggc ggccgcaagc atccgaatca ggaatttatc aacgtcgata
     2281 ccaccaacat cctgtttatc tgcggcggcg cgtttgcagg cttggaaaaa gtcatccgcc
     2341 agcgtactga aaaaggcggt atcggtttcg gtgcgtccgt tcacagcaag gacgaaaatg
     2401 ccgacattac caagctgttc ggcatcgtcg aaccggaaga tttaatcaaa ttcggtctga
     2461 ttccggaatt aatcggacgt ttgcctgtga ttgcaacgtt agaagaactg gatgaggacg
     2521 cgctgattaa tattttgacc gagccgaaaa acgctttggt caagcagtat caagccttgt
     2581 tcggtatgga aaatgtcgag ttggaatttg aagaaggcgc attgcgttcc attgcgtggc
     2641 aggcaatgga gcgcaaaacc ggcgcgcgcg gcctgcgttc catcgtcgaa cgctgcctgc
     2701 tcgatacgat gtaccgcctg cctgatttgc aaggcttgaa aaaagtggtg gtcggtaagg
     2761 cagtcatcga agagggcaag gaaccggaat tggtgttcga gtcctgatgg caaacaaaac
     2821 cgcttcggaa cgttgaacca cgtttccgaa gcggtttttt gtttttgatg cctaggggcg
     2881 gtttgcggcg gcaaattccg tcagcacgtg ttccaaacgc cgcaaacctt ccgccgtatc
     2941 ctcatcgtcc aacagcagcg aaggcgcgaa acgcaatacg tccgcacccg caaccaaaat
     3001 catcacgccg tgtttcaagg cggcggcggt gatttcggat gcgcgtccgc gataggcttc
     3061 gtccaacacg cagccgagca gcagtcccat gccgcgaacc tgtgagaaca agcctgtttt
     3121 cctgcccaaa tccagcaatg ccgtctgaag tttctgcccc tgttcacgga catggtttaa
     3181 agtttcgggc gtattgatga tgtcgaatgc gcggctgccg accgcacacg ccatcgggtt
     3241 gccgccgaaa gtcgagccgt gcgtgcccgg ttggaaggcg gcggcaatct tttctgtcgc
     3301 cagcatcgcg ccgatcggaa agccgcagcc caaggctttt gccgaactca aaatatcggg
     3361 aacaatgccg taatgttcat aggcaaacag cctgcccgta tgccccatcc cggtttgaac
     3421 ttcgtccaaa atcaacaacg cattgtgccg gtcgcacaga cggcgcgcgg tttgcaaata
     3481 ttccgcagtg gcgggcagga tgccgctttc gccctgtatc ggctcgatga tgaccgcgca
     3541 ggtctgttcg ccgacggcag cttccagcgc ggcaatatcg ttgaacggaa cgtgcgtaat
     3601 gccttgcggc agcggtgcat aatccttgct gtatttcggc tggccgccga cggacacggt
     3661 aaacagcgtg cgcccgtgga aactgttgat acaggcgacg atttcgcttt tgcctccgcc
     3721 gaaacggtcg cgcgcatatt tccttgccag cttcaacgcc gcctcattcg cctccgcgcc
     3781 cgagttgcag aaaaaaacct tgtcggcaaa actgtttgca accaattttt gcgccaattc
     3841 ctgcgccgga cgcgtcgtat agatattgga aatgtgccac agcttgtgca tctgcgcgtt
     3901 taaagcatcg acaagggcag ggtggcagtg tcccagcgca ttgacggcga taccgcctga
     3961 aaaatcaata tattcacgcc cttccgtatc ccaaacgcgg ctgcctgaag cgcgttcggg
     4021 aatcatcggg gcaaaggcga aattgggggt cagatagttt tgcataattg ctcctgattg
     4081 cggttttgct cgggattatg caccgttttt caaagcagat aaagggaaat tgccgacaat
     4141 atcgggcagc ggtaaaaata aaccgaaata ttttcaatcg gatagatgaa aaatcaaaaa
     4201 aatttcgata aaatgcttga ggcgcggcag cgttttgatt tagaatctcc ccaatatttt
     4261 tatcttcaga cggcatttca tcatgcaagg caaaaaattt acaaccgctt attgctattg
     4321 gtaccacaca gacgtgcggt acttttttgc gcttgcttga aatccatccc atacgcaaaa
     4381 caggccgctc gaaaacgggg cggctttttt gttaccttca cacaggtcgc ccgattcggc
     4441 aacacacgac agaatcagga aaatgaccat gaatgcaatg ccccaaaccg ccgcacaaaa
     4501 cgaaaccctg cacatttgca gcattattgt cgatgatgca caggattttt cccccatgct
     4561 tctcgatgca gggcgggacg acacacttat cagcgaatcg atgattccgc aaatccgcac
     4621 tgttgccgcc ctgatagccg ccgaacggca cgacttcagc cgcagcagcc ccgccgagtt
     4681 taccgatgcc gccgattttt ttgccgcacg gattctcgta ttgggcgtgc gacgcttcca
     4741 tctggacgta tcgctgcttc agattttgaa aaccgccaac agccgcgccc gccgctttgc
     4801 cgaaaaacac cgcctgtttt tcacacccgc acaagccgaa ttgagcctga acaaacacaa
     4861 aaaccgccgc ctgctgaccg tagaaaccga acacgaagtt gaaaacaaag gcaacccagt
     4921 cgccaacagc ctcgcatttg tccgcaaact gcacaccctg cccctgtaaa catcacgatt
     4981 tgtcggcaga atgcttgcca aaattcccga cggcgataca ataaaaccga ttttccaccc
     5041 aaacaggaca cacatgaaaa aaatcatcgc ctccgcgctt atcgcaacat tcgcactcgc
     5101 cgcctgccaa gacgacacgc aggcgcggct cgaacagcag cagaaacaga ttgaagccct
     5161 gcaacagcag ctcgcacagc aggcagacga tacggtttac caactgactc ccgaagcagt
     5221 caaagacacc attcctgccg aagcacaggc aaacggcaac aacgggcaac ccgttaccgg
     5281 taaagacggg cagcagtata tttacgacca atcgacagga agctggctgc tgcaaagcct
     5341 ggtcggcgcg gcggcaggcg cgtttatcgg caacgcgctg gcaaacaaat tcacacgggc
     5401 aggcaaccaa gacagtcccg tcgcccggcg cgcgcgtgca gcctaccatc agtccgcacg
     5461 ccccaatgcg cgcaccagca gggatttgaa cacgcgcagc ctccgtgcaa aacaacaggc
     5521 ggcgcaggcg cagcgttacc gcccgacaac gcgcccgccc gccaattacc gccgccccgc
     5581 tatgcgcggt ttcggcagga ggcggtaaac ccggcgcacc aatgccgtct gaagagcttt
     5641 cagacggcat ttttgcattt gttagggaca ttgttatgtt gccgtttgat tttcagacgg
     5701 cattttgttt ccaagcgttt gatgtcggga tggcaattct gaatttacgt gcgttggcag
     5761 ggcggcattg tcatgccgcc gttgggtttt cagacggcat catatcgaac agtcaagccg
     5821 tagggcgagc attcttgccc accgttgcaa gggcgggatt tggtgggcag gaatgcccac
     5881 cctgcatctg aaacccttcc gtgtcattcc cgtgcaggaa ggaatctaga tatttgaatt
     5941 tacggaaatt ttcaatcgtt gccaaagcgg aaaagggttt
//
LOCUS       DAXHPV010000122         5968 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.122, whole genome shotgun sequence.
ACCESSION   DAXHPV010000122 DAXHPV010000000
VERSION     DAXHPV010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5968)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5968)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5968
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.122"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            71..1609
                     /gene="murJ"
                     /locus_tag="ACFM6C_001605"
     CDS             71..1609
                     /gene="murJ"
                     /locus_tag="ACFM6C_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HFC6159039.1"
                     /translation="MNMLGALAKVGSLTMVSRVLGFVRDTVIARAFGAGMATDAFFVA
                     FKLPNLLRRVFAEGAFAQAFVPILAEYKETRSKEATEAFIHHVAGMLSFVLVIVTALG
                     ILAAPWVIYVSAPGFAKDADKFQLSIDLLRITFPYILLISLSSFVGSVLNSYHKFSIP
                     AFTPTFLNVSFIVFALFFVPYFDPPVTALAWAVFVGGILQLGFQLPWLAKLGFLKLPK
                     LNFKDAAVNRVMKQMAPAILGVSVAQISLVINTIFASYLQSGSVSWMYYADRMMELPS
                     GVLGAALGTILLPTLSKHSANQDTEQFSALLDWGLRLCMLLTLPAAVGLAVLSFPLVA
                     TLFMYREFTLFDAQMTQHALIAYSFGLIGLIMIKVLAPGFYARQNIKTPVKIAIFTLI
                     CTQLMNLAFIGPLKHVGLSLAIGLGACINAGLLFFLLRRHGIYRPGKGWAAFLAKMLL
                     ALAVMCGGLWAAQAYLPFEWVRVGGMRKAGQLCILIAVGGGLYFASLAALGFRPRHFK
                     RVES"
     gene            1712..2668
                     /locus_tag="ACFM6C_001606"
     CDS             1712..2668
                     /locus_tag="ACFM6C_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheT family hydrolase"
                     /protein_id="HFC6159040.1"
                     /translation="MILTPPDTPFFLRNGNADTIAAKFLQRPAPAYRRELLPDSTGKT
                     KVAYDFSDGISPDAPLVVLFHGLEGGSGSHYAVELMLAVRSRGWNGVVVHFRSCGGVA
                     NTAPVFYHLGDTAEIAFTLDTLAARYREIYAVGVSLGGNALAKYLGEQGKKALPHAAA
                     AVSAPVDAEAAGSRFDSGITRLLYTRYFLRTLIPKARSLQGFQTTFAAGCKTLGEFDD
                     RFTAPLHGFADRHDYYRQTSCKPLLKHVAKPLLLLNAANDPFLPPEALPTPDEVSEAV
                     TLFQPAHGGHVGFVSSTGGRLHLQWLPQTVLSYFDSFRTNRR"
     gene            2717..3499
                     /gene="trpC"
                     /locus_tag="ACFM6C_001607"
     CDS             2717..3499
                     /gene="trpC"
                     /locus_tag="ACFM6C_001607"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004425 - indole-3-glycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006568 - tryptophan metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HFC6159041.1"
                     /translation="MTDILNKILATKAQEVAAQKAAVNAEHIRALAAEAAPVRSFIDS
                     IRGKHRLNLPAVIAEIKKASPSKGLIRPDFRPPEIARAYENAGAACLSVLTDEPYFQG
                     SPEYLKQAREAVSLPVLRKDFIIDEYQVYQARAWGADAVLLIAAALEQEQLERFEAVA
                     HELGMTVLLELHDETELEKCRNLTTPLWGVNNRNLRTFEVSLDQTLSLLPALEGKTVV
                     TESGITGKADVEFMQSRGVHTFLIGETFMRADDIEAEVGKLF"
     gene            3565..5865
                     /gene="recQ"
                     /locus_tag="ACFM6C_001608"
     CDS             3565..5865
                     /gene="recQ"
                     /locus_tag="ACFM6C_001608"
                     /EC_number="5.6.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HFC6159042.1"
                     /translation="MHRPTAKQILHEVFGYPEFRGKQEAIVNALAVGESLMVLMPTGG
                     GKSLCYQIPALMREGVAVVVSPLIALMNDQVASLHVAGIEAAAVNSGTSADGAREIAD
                     KLAQGRLKLLYVAPERLVTDRFLRFLDQQTVSLFAIDEAHCVSQWGHDFRPEYQRLGI
                     LAERYPNVPRIALTATADAATRADIKHYLHLDDAPEFVSSFDRPNIYYQVIEKNNGKK
                     QLLDFIRKEMTGQSGIVYCLSRKKVEDVARFLRENGLNAIPYHAGLSMDVREENQRRF
                     THEDNIIVVATVAFGMGIDKPDVRFVAHLDMPQSVEHFYQESGRAGRDGLPAASWLCY
                     GLNDWVLLRERIAEGNSDEVQKQIEMQKLDAMLAVCETAACRRVLLLKHFGEASEPCG
                     HCDNCLHPPVRFDGTVLVQKLLSCVYRAGQRFAAGYITNLLRGKSDDWIRGNRHEQLS
                     TFGIGTELSDKEWRSVIRQCISLGYLTVNITRYQALQLTEAAKKVLKGETEVMLRPLK
                     RDKPAARTLKDNWLRTEREERLWQALRVWRMKQAEAEGIPAYMIFGDKTLRDLVEKMP
                     QNLNGLHDIYGLGEAKTERFGHGILEVCRNAAGFSRDAVIRPQTEREQQLRQKLEAWR
                     YEQARAENCGLHAVLSDESLADMLADTPETETDLEGVHGLGSVRAAKYGRDILAVCRP
                     FSDGIDETAKHKRRLMRALIQWCNETAKHEQSEPYRILSKAALRAIAAKQPEGLAELA
                     AVYGVGEEKAARYGAAVLAVLERNAV"
BASE COUNT         1297 a         1778 c         1635 g         1258 t
ORIGIN      
        1 aatttaatcc actatcaaag tctgatcctg ccgccctaaa gggcggggtt tcaaccgaaa
       61 aggaaatacg atgaatatgc tgggagcttt ggcaaaagtc ggcagcctga cgatggtgtc
      121 gcgcgttttg ggatttgtgc gcgatacggt cattgcgcgc gcattcggcg cgggcatggc
      181 gacggatgcg ttttttgtcg cgttcaaact gcccaacctg cttcgccgcg tgtttgcgga
      241 gggggcgttt gcccaagcgt ttgtgccgat tttggcggaa tataaggaaa cgcgttctaa
      301 agaggcgacg gaggctttta tccaccatgt ggcggggatg ctgtcgtttg tgctggtcat
      361 cgttaccgcg ctgggcatac ttgccgcgcc ttgggtgatt tatgtttccg cacccggttt
      421 tgccaaagat gccgacaaat ttcagctctc catcgatttg ctgcggatta cgttccccta
      481 tatcttattg atttcacttt cctcttttgt cggctcggta ctcaattcct atcataaatt
      541 cagcattccg gcgtttacgc ccacgttcct gaacgtgtcg tttatcgtat tcgcgctgtt
      601 tttcgtgccg tatttcgatc ctcccgttac cgcgctggct tgggcggttt ttgtcggcgg
      661 tattttgcag ctcggctttc agctcccttg gttggcgaaa ctgggttttt tgaaactgcc
      721 caaactgaat ttcaaagatg cggcggtcaa ccgcgtcatg aaacaaatgg cgcctgcgat
      781 tttgggcgtg agcgtggcgc agatttcttt ggtgattaac acgattttcg cgtcttatct
      841 gcaatcgggc agcgtttcat ggatgtatta cgccgaccgc atgatggagc tgcccagcgg
      901 cgtgctgggg gcggcactcg gtacgatttt gctgccgact ttgtccaaac actcggcaaa
      961 ccaagatacg gaacagtttt ccgccctgct cgactggggt ttgcgcctgt gcatgctgct
     1021 gacgctgccg gcggcggtcg gactggcggt gttgtcgttc ccgctggtgg caaccttgtt
     1081 tatgtaccga gaattcacgc tgtttgacgc gcagatgacg cagcacgcgc tgattgccta
     1141 ttctttcggc ttaatcggtt tgattatgat taaagtgttg gcacccggct tctatgcgcg
     1201 gcaaaacatc aaaacgcccg tcaaaatcgc catcttcacg ctcatctgca cgcagttgat
     1261 gaaccttgcc tttatcggcc cactgaaaca cgtcggactt tcgcttgcca tcggtctggg
     1321 cgcgtgtatc aatgccggat tgttgttctt cctgttacgc agacacggca tttaccgccc
     1381 cggcaagggt tgggcggcat ttttggcgaa aatgctgctc gcactcgccg taatgtgcgg
     1441 cggcctgtgg gcggcgcagg cttacctgcc gtttgaatgg gtacgcgtcg gcggaatgcg
     1501 gaaagcgggg cagctctgca tcctgattgc cgtcggcggc ggactgtatt tcgcctctct
     1561 ggcggctttg ggcttccgtc cgcgccattt caaacgcgtg gaaagctgac cggagcgccg
     1621 ccttttgccg gcaaacgctt tttccgcgcg tccgtgccgg acgggctgcc gcatcatcaa
     1681 tgccatctga aaacagaaaa accgatacct tatgattttg acaccgccgg acacaccgtt
     1741 tttcctccgc aacggcaatg ccgatacgat tgccgccaaa ttcctgcaac gccccgcacc
     1801 cgcataccgc cgcgagctgc ttcccgacag cacgggtaaa accaaagtcg cctacgactt
     1861 ttcagacggc atttcgcccg atgcgccgct ggtcgtgctg tttcacggtt tggagggcgg
     1921 cagtggcagc cattacgcgg tcgaactgat gctcgcggta cgcagccgcg gttggaacgg
     1981 cgtagtcgtc catttccgca gctgcggcgg cgtagcgaac accgccccgg tgttctacca
     2041 cttgggcgat accgccgaaa tcgcctttac tttggacacg ctcgccgcgc gttaccgtga
     2101 aatatacgcc gtcggcgtat cgctgggcgg caacgcgctg gcaaaatatt tgggcgaaca
     2161 gggcaaaaag gcattgccgc acgccgctgc cgccgtatcc gcccccgtcg atgcagaggc
     2221 ggcaggcagc cgcttcgaca gcggcatcac gcggctgctc tacacgcgct acttcctccg
     2281 caccctgata cccaaagcac gttcgctcca aggctttcag acgacatttg ccgcagggtg
     2341 caaaacactg ggtgagtttg acgaccgttt caccgcaccg ctgcacggct ttgccgaccg
     2401 gcacgactac taccgccaaa cttcctgcaa accgctgctc aaacacgttg ccaaaccgct
     2461 gctcctgctc aatgccgcca acgacccctt cctgccgccc gaagcgctgc cgacaccgga
     2521 cgaagtgtcc gaagccgtta ccctgttcca gccggcacac ggtggtcatg tcggctttgt
     2581 cagcagcacc ggcggcaggc tgcacctgca atggttgccg cagaccgtcc tgtcctattt
     2641 cgacagcttc cgtacaaaca ggcgttaacg gtttgatgct aatattcccc tttcccagac
     2701 gaatacggaa cccgacatga ccgacatcct caataaaatc cttgccacca aagcacagga
     2761 agttgccgcc caaaaagccg ccgtcaacgc cgaacacatc cgcgcacttg ccgcagaagc
     2821 cgcgcccgtc cgcagcttca tcgattcgat acgcggcaaa caccgcctaa acctgcccgc
     2881 cgtcattgcc gaaatcaaaa aggcaagccc gagcaaaggc ctgatccgtc cggacttccg
     2941 accgcccgag attgcccgcg cctatgaaaa cgccggggcg gcgtgtttgt ccgtactgac
     3001 cgacgaaccc tatttccaag gttcgcccga atacctcaaa caggcgcgcg aagccgtatc
     3061 gctgcccgtg ctgcgcaaag acttcatcat cgacgaatat caggtttatc aggcgcgcgc
     3121 atggggggcg gatgccgtcc tgctgattgc cgcagcactg gaacaggaac aattggaacg
     3181 ctttgaagcg gtggcgcacg aattgggcat gaccgtcctg ctcgagctgc acgacgaaac
     3241 cgaattggaa aaatgccgca acctgaccac gccgttgtgg ggcgtaaaca accgcaacct
     3301 gaggactttt gaagtctccc tcgaccaaac cctgtcgctg ctgcccgcac tggaaggcaa
     3361 aaccgtcgtt accgaaagcg gcattacggg caaggcggat gtggaattta tgcaatcgcg
     3421 cggcgtgcac accttcctga ttggcgaaac gttcatgcgt gccgacgata ttgaggcgga
     3481 agtgggcaaa ctcttctaaa tctcgatttc agacggcata ttgccgccga ccaatcgaca
     3541 cccattaccg gacacggaac catcatgcac cgacccaccg ccaaacagat tctgcacgaa
     3601 gtattcggtt atcccgaatt tcgcggcaag caggaggcta tcgtcaatgc tttggcagtc
     3661 ggcgagagtt tgatggtgct gatgccgacg ggcgggggca agtctttgtg ttaccagatt
     3721 ccggcgctga tgcgcgaagg cgtggcggtt gtcgtatcgc cgctgattgc gctgatgaac
     3781 gaccaagtgg ccagcctgca tgtggccggc atcgaagcgg cggcagtcaa cagcggcaca
     3841 tcggcagatg gggcgcgcga gattgccgac aagcttgccc aaggccgtct gaaactgctt
     3901 tatgtcgcac cggaacgcct agttaccgac cgctttttgc gttttctcga ccaacaaacc
     3961 gtcagcctgt tcgccattga cgaggcgcac tgcgtcagcc agtggggaca cgatttccgc
     4021 cccgaatatc aacggctcgg tatacttgcc gaacgctatc cgaacgttcc gcgcatcgcc
     4081 ctgaccgcca ccgccgatgc cgccacgcgc gccgacatca agcattatct gcacttggac
     4141 gatgcgcccg aatttgtctc cagctttgac cgcccgaata tttattatca ggttatcgaa
     4201 aaaaacaacg gcaaaaaaca attgctggat ttcatccgca aagaaatgac ggggcaaagc
     4261 ggcattgtgt attgcctaag ccgcaaaaag gttgaagatg tggcgcggtt tttgcgtgaa
     4321 aacggattaa acgcgattcc gtatcatgcc ggtctgagta tggacgtgcg cgaggaaaac
     4381 caacgccgct ttacgcatga agacaatatt atcgtggtgg cgaccgtggc gttcggcatg
     4441 ggcatagaca aacccgacgt gcgctttgtc gcccatctcg atatgcccca gagtgtcgaa
     4501 catttctatc aggagtcggg gcgcgccggt cgggacgggc tgcctgccgc gagctggctg
     4561 tgttacggtt tgaacgattg ggtgttgctg cgcgaacgga ttgccgaagg caacagcgac
     4621 gaggtgcaaa agcaaatcga aatgcaaaaa ctcgatgcca tgcttgccgt ctgcgaaacc
     4681 gccgcctgcc gccgcgtact gctgctcaaa catttcggcg aagcatccga accctgcggc
     4741 cattgcgaca actgcctgca tccgcccgta cggtttgacg gcacggtgtt ggtgcaaaaa
     4801 ttactcagct gcgtgtaccg cgccggacaa cgttttgccg ccggttacat caccaacctt
     4861 ttgcgaggta aaagcgacga ttggatacgc ggcaaccggc acgaacaact gtccacattc
     4921 ggcatcggta cggagttgtc cgacaaagaa tggcgcagcg tcatccgcca gtgtatcagc
     4981 ctcggctacc tcaccgtcaa cattacccga tatcaggcat tgcaactgac cgaagccgcc
     5041 aaaaaagtcc tcaaaggcga aaccgaagtg atgctgcgtc cgctcaagcg cgacaagccc
     5101 gccgcccgca ccctcaaaga caactggctg cgtaccgaac gcgaagaacg cctgtggcag
     5161 gcattgcgcg tttggcgtat gaaacaggca gaagccgaag gcatccccgc ctatatgatt
     5221 ttcggcgaca aaaccctgcg cgaccttgtc gaaaaaatgc cgcaaaacct caacgggctg
     5281 cacgacatct acggcttggg cgaagccaaa accgaacgtt tcggacacgg catactcgaa
     5341 gtctgccgca acgccgccgg cttcagccgc gacgcggtca tccgtccgca aaccgaacgc
     5401 gaacaacaac tgcgtcaaaa actcgaggcc tggcggtatg aacaggcaag ggcggaaaac
     5461 tgcggcctgc atgccgtcct ctccgacgaa agccttgccg atatgcttgc cgatacgccc
     5521 gaaaccgaaa ccgacctcga aggcgtacac ggcttgggca gcgtacgcgc cgccaaatac
     5581 ggacgggaca tcctcgccgt ctgccgtccg ttttcagacg gcatcgatga aaccgccaaa
     5641 cacaaacgcc gcctgatgcg cgccctgatc caatggtgca acgaaacggc aaaacacgaa
     5701 cagtccgaac cctaccgcat tctcagcaaa gccgccctac gcgccattgc cgccaaacag
     5761 ccggaaggtt tggcggagct tgccgccgta tacggcgtag gcgaagaaaa agccgcacgt
     5821 tacggtgcgg cggtgttggc ggtattggaa cgaaatgccg tctgaagccc gttaccaagt
     5881 ttcagacggc attgcctcta tttaaaaatt cctgttttta tagtggatta acaaaaatca
     5941 ggacaaggcg gcgagccgca gacagtac
//
LOCUS       DAXHPV010000123         5947 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.123, whole genome shotgun sequence.
ACCESSION   DAXHPV010000123 DAXHPV010000000
VERSION     DAXHPV010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5947
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.123"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            22..405
                     /locus_tag="ACFM6C_001609"
     CDS             22..405
                     /locus_tag="ACFM6C_001609"
                     /EC_number="2.7.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004143 - ATP-dependent diacylglycerol
                     kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HFC6159043.1"
                     /translation="MEPSSYAAEKKGKGGIRRVINAFGYSIDGIAAAYRYEAAFRQVL
                     WLNVLLVCAAFFWVSETAIRLPLIIASFVSVIVELFNTAVEAAVDHTSTEKHELAKRA
                     KDAGSAAQLFAMLMLAAVWLSALFG"
     gene            519..992
                     /locus_tag="ACFM6C_001610"
     CDS             519..992
                     /locus_tag="ACFM6C_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016531 - copper chaperone activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HFC6159044.1"
                     /translation="MKKLLAAVMMAGLAGAVSAAGVHVEDGWARTTVEGMKIGGAFMK
                     IHNDEAKQDFLLGGSSPVADRVEVHTHINDNGVMRMREVEGGVPLEAKSVTELKPGSY
                     HVMFMGLKKQLKEGDKIPVTLKFKNAKAQTVQLEVKIAPMPAMNHGHHHGEAHQH"
     gene            1118..2221
                     /gene="mnmA"
                     /locus_tag="ACFM6C_001611"
     CDS             1118..2221
                     /gene="mnmA"
                     /locus_tag="ACFM6C_001611"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HFC6159045.1"
                     /translation="MNTTANTTNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWED
                     DDNDEYCSIKQDSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDV
                     LCNAEIKFKCFLDYAVGQGADTIATGHYARKEVRNGVHYLLKGLDRNKDQSYFLYRLK
                     PFQLERAIFPLGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTD
                     NGKMVTPEGKTVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDH
                     PLLYTRSLVMNDLSFTLPERPKAGRYTCKTRYRMADAPCELRYLDEETAELVFDEPQW
                     AVTPGQSAVLYDGDICLGGGIIQSTDKPVIITR"
     gene            2292..3962
                     /locus_tag="ACFM6C_001612"
     CDS             2292..3962
                     /locus_tag="ACFM6C_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HFC6159046.1"
                     /translation="MEKIWLDSYEQGVNAEIDITQYGSVSDVFCQSVKKFAGQPAFQN
                     MGKTLTYAETGKLATDFASYLQNVLKLPRGERVAIMLPNVLQYPIALFGILQAGLVAV
                     NTNPLYTPRELEHQLKDSGATAIIVLENFANTLELVLPRTQIKHVIVASVGEMFGLLK
                     GSLINFVIRKIKKMVPEYRIRETISFQTALKEGAKHVFQPVALNREDTALLQYTGGTT
                     GVAKGAVLSHGNICANMLQAKEWIKNQLREGKETVIAALPLYHIFALTVNLMIFANAG
                     SKIVLITNPRDMKGFIGELKKQRVNVFIGVNTLFNAMVNRPDFAEVDFSGLRLTLGGG
                     MATQKAVAEKWKKITDTPIVEAYGLTEASPGVCCNPLNIESYSGSIGLPVSSTEVELR
                     DANGKEVPVGQPGELWVRGPQVMKGYWNRPEETAKAIDARGFLETGDIAVMDEKGWLK
                     LVDRKKDLIVVSGFNVYPNEIEEVIAHHGKVMEVACIGVPDEKTGEALKVFVVRKDPS
                     LTKEELIAFCRTELTAYKVPKNIEFRDELPKSNVGKILRRELRQSTGK"
     gene            4074..5708
                     /locus_tag="ACFM6C_001613"
     CDS             4074..5708
                     /locus_tag="ACFM6C_001613"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HFC6159047.1"
                     /translation="MTKFIFVTGGVVSSLGKGIAAASIAAILESRGLNVTMLKLDPYI
                     NVDPGTMSPFQHGEVFVTDDGAETDLDLGHYERFIDSTMTRRNSFSTGQVYENVIAKE
                     RRGDYLGGTVQVIPHITDEIKRRIHEGAAGYDVAIVEIGGTVGDIESLPFLEAIRQMR
                     SQLGRNNTLFAHLSYVPYIAAAGEIKTKPTQHTVKEMLSIGLQPDILICRMDRTMPAD
                     ERRKIALFCNVEERAIVGSYDVDSIYECPEMLHDQGIDNIITEQLQLNVQQADLTAWK
                     KIVHAIQNPKHTVKIAMVGKYVDLTESYKSLIEALKHAGVHTETDVQITFVDSESIEK
                     NNGDVSMLKDMDAILVPGGFGSRGVEGKIAAVRYARENNVPYLGICLGMQIALIEYAR
                     DVAGLKGANSTEFDLKCAAPVVALIDEWQTADGSVETRDESADLGGTMRLGAQEVELK
                     TGSLAAKIYGSGHIRERHRHRYEVNNNYVPTLEQAGLVIGGVSAGRERLVETIELPNH
                     PWFFACQFHPEFTSNPRKGHPLFTAFVKAALNNKKA"
BASE COUNT         1554 a         1613 c         1504 g         1276 t
ORIGIN      
        1 gaacattttg aaaggatacc gatggaacct tcctcctacg cggcagaaaa aaaaggcaaa
       61 ggcggcatca ggcgcgtcat taacgcattc ggctattcga tagacggcat cgccgccgcc
      121 taccgttacg aagcggcatt ccgtcaggtt ttgtggctga acgtactgct ggtgtgcgcg
      181 gcattttttt gggtttccga aaccgccatc cgcctgccgt tgattatcgc gtcttttgtg
      241 tcggtcattg tcgaactgtt caacaccgcc gtcgaagctg ccgtcgatca tacttcgacc
      301 gaaaaacacg agctggccaa acgcgccaaa gacgcaggtt ctgccgcaca attgttcgcg
      361 atgctgatgt tggcggcggt ttggctgtct gccctgttcg ggtaaaacgc ttgcagcagg
      421 atttgtaatc ctttaggatt agtatgtggt atttattatt cacttaatcc actataagat
      481 taagcacatt ccccgtctga tattcaagga gcagaaagat gaaaaaatta ttggcagccg
      541 tgatgatggc aggtttggca ggcgcggttt ccgcggccgg agtccacgtc gaggacggct
      601 gggcgcgcac caccgtcgaa ggtatgaaaa taggcggcgc gttcatgaaa atccacaacg
      661 acgaagccaa acaagacttt ttgctcggcg gaagcagccc cgttgccgac cgcgtcgaag
      721 tgcataccca catcaacgac aacggcgtga tgcggatgcg cgaagtcgaa ggcggcgtgc
      781 ctttggaggc gaaatccgtt accgaactca agcccggcag ctatcacgtg atgtttatgg
      841 gtttgaaaaa acaattaaaa gagggcgaca agattcccgt taccctgaaa tttaaaaacg
      901 ccaaagcgca aaccgtccaa ctggaagtca aaatcgcgcc gatgccggca atgaaccacg
      961 gtcatcacca cggcgaagcg catcagcact aatctgctga aaatgtttga aatgccgtct
     1021 gaaaaagccc gggctttcag acggcatttt tatgaccgcc tttaaaatgt gttaaaatct
     1081 gcctttaaaa accgccgttt ccaaccatat tctacgcatg aatacgacag caaacaccac
     1141 caatatcatc gtcgggctct ccggcggtgt cgattcttcc gtaaccgccg ccctgctcaa
     1201 gcagcagggt tatcaagtgc gcggtgtgtt catgcagaac tgggaagacg acgacaacga
     1261 cgaatattgc agcatcaaac aggattcgtt cgatgccatc gccgttgccg atattatcgg
     1321 catcgatatc gacatcgtta atttcgccgc gcaatataaa gacaaagtct ttgcttattt
     1381 tcttcaggaa tacagtgcgg ggcgcacgcc gaatccggat gtgttgtgca acgccgaaat
     1441 caaattcaaa tgctttttgg actacgccgt agggcagggc gcggatacca tcgccaccgg
     1501 ccactatgcg cgcaaagaag ttcgcaacgg cgtgcattac ctgctcaaag gtttggatcg
     1561 aaacaaagac caaagctatt tcctctaccg cctcaagcct ttccaactcg aacgcgcgat
     1621 ttttccgttg ggcggtttgg aaaaacccga agtgcgccgc cttgccgccg agttcaaact
     1681 gccgaccgcc gccaaaaaag acagcacggg catctgcttc atcggtgaac gcccgtttcg
     1741 cgagtttctg caaaaatacc tgccgaccga caacggtaaa atggttacgc ccgaagggaa
     1801 aaccgtcggc gaacacgtcg ggctgatgtt ctacacgctc ggacagcgca aaggtttggg
     1861 catcggcggc gcgggcgaac cgtggtttgt tgcggctaaa gatttgacga aaaacgaact
     1921 gattgtcgtg caaggacacg accatccgct gctctatacc cgcagccttg tgatgaacga
     1981 tttgagtttc acgcttcccg aacgcccgaa ggcaggacgc tatacctgca aaacgcgtta
     2041 ccgtatggcg gacgcgcctt gtgagttgcg ctatttggat gaagaaaccg ccgagctggt
     2101 gtttgacgaa ccgcaatggg cggttacgcc gggccagtct gccgtgctgt acgacggcga
     2161 catctgtttg ggcggcggca ttatccaatc aaccgacaaa cccgtcatca tcacacgata
     2221 aaggtaatgc cgtctgaaac ggttttcaga cggcattgtt ccgctcaatt ccactttaaa
     2281 gaccgatacc tatggaaaaa atctggttag acagttacga acagggcgtg aatgccgaaa
     2341 tcgacatcac gcaatacggt tccgtcagcg atgtattttg ccaaagtgtc aagaaatttg
     2401 ccggccaacc tgcttttcaa aacatgggca agacgctgac ttatgccgaa accggcaaac
     2461 tggcaacaga ttttgcttct tatctgcaaa acgtcctgaa gctgccgcgc ggcgaacgtg
     2521 ttgccattat gctgcccaac gtattgcaat acccgattgc ccttttcggc attttgcagg
     2581 caggtttggt agcggtgaac accaatccgc tctatacccc gcgcgagctg gagcatcagt
     2641 tgaaagacag cggcgcgacc gccatcatcg ttttggaaaa tttcgccaac acgctggagc
     2701 tggtgctgcc gcgcacgcag atcaaacacg tcatcgtagc ctccgtcggc gaaatgttcg
     2761 ggctgcttaa aggttcgctg atcaatttcg tcatccggaa aatcaagaaa atggtgcccg
     2821 aataccgtat tcgggaaacc atttcctttc agacggcatt gaaagagggg gcgaagcacg
     2881 ttttccaacc tgtcgcatta aaccgcgaag ataccgcgct gttgcaatac acgggcggca
     2941 cgacaggtgt tgccaaaggg gcggtgctga gccacggcaa catctgcgcc aatatgcttc
     3001 aggcaaaaga atggattaaa aaccagttgc gtgagggaaa agaaaccgtt atcgccgcct
     3061 tgccgctgta ccatattttt gccttaaccg tgaatctgat gatttttgcc aatgccggct
     3121 cgaaaattgt cctgattacc aacccgcgcg atatgaaagg ctttatcgga gaactgaaaa
     3181 aacagcgggt taatgtattt atcggcgtga acacgctgtt taacgcgatg gttaaccgtc
     3241 ctgattttgc cgaagtcgat ttttcaggat tgcggctgac tttgggcggc ggtatggcga
     3301 cccaaaaagc cgttgccgaa aaatggaaaa aaatcaccga cacgcccatc gtcgaagcct
     3361 acggtctgac cgaagccagc cccggcgtgt gctgcaaccc cttaaacatc gaatcataca
     3421 gcggcagcat cggtttgccc gtctcgtcca ccgaagtcga actgcgcgac gcaaacggca
     3481 aagaagtccc cgtcgggcag ccgggcgaat tgtgggtgcg cggcccgcaa gtcatgaaag
     3541 gctattggaa ccgtcccgaa gaaaccgcta aagccataga cgcgcgcggt ttcttggaaa
     3601 ccggcgatat tgccgtcatg gacgaaaaag gctggttgaa gctggttgac cgtaagaaag
     3661 acctcattgt tgtttctggt tttaatgttt atccgaacga aatcgaggaa gtcatcgcgc
     3721 atcacggcaa agtgatggaa gtcgcctgta tcggcgttcc cgacgaaaaa accggagaag
     3781 ctctcaaagt gtttgtcgtc agaaaagatc cgtctttgac gaaagaagaa cttatcgcct
     3841 tttgccgcac cgaattaacc gcatataaag taccgaaaaa tatcgaattc cgcgacgagt
     3901 tgcccaagtc caacgtcggc aaaatcctgc gccgcgagtt gcggcaaagt actgggaaat
     3961 aaagaaaaga tgccgtctga aaacagccgt ccaccgttca gacggcatcc gtccgtttgc
     4021 cagaaccgcg cgcttcaagt taaaatcgca cattccaaca tgggtattcc atcatgacca
     4081 aattcatttt cgtaaccggc ggcgttgtct cctcactggg taaaggtatc gccgccgctt
     4141 ctattgccgc tatcctcgaa tcgcgcggct tgaacgttac catgctcaag cttgatcctt
     4201 atatcaacgt cgatcccggc acgatgagcc cgtttcaaca cggcgaagtg ttcgtaaccg
     4261 acgacggcgc ggaaaccgac ctcgacttag gacactacga acggtttatc gattccacga
     4321 tgacccgccg caacagcttc agcacggggc aggtgtacga aaacgtcatc gccaaagaac
     4381 gacggggcga ctacctcggc ggcacggttc aagtcatccc gcacattacc gacgaaatca
     4441 aacgccgcat ccacgaaggc gcggcaggtt acgatgtggc gattgtcgaa atcggcggca
     4501 cggtcggcga catcgaatcg ctgccgtttt tggaagccat ccgccagatg cgaagccagt
     4561 tgggacgcaa caacaccctg ttcgcccact tgagctacgt cccctacatc gccgctgcag
     4621 gcgaaatcaa aaccaagccg acccagcaca ccgttaaaga aatgttgagc atcggtttgc
     4681 aacccgacat cctgatttgc cgtatggaca ggacaatgcc tgcggacgaa cgccgcaaaa
     4741 tcgccttgtt ctgcaacgtg gaagaacgcg cgattgtcgg cagctacgat gtggacagca
     4801 tctacgaatg ccccgaaatg ctgcacgacc aaggcatcga caacatcatt accgagcagt
     4861 tgcagcttaa tgtgcagcag gcggatttga ccgcgtggaa aaaaatcgtc cacgccatcc
     4921 aaaacccgaa acacaccgtc aaaatcgcca tggtcggcaa atacgtcgat ttgaccgaat
     4981 cctacaaatc actgattgaa gccttgaaac acgcaggtgt tcacaccgaa accgacgtac
     5041 aaattacctt tgttgacagc gaaagcatcg agaaaaacaa cggcgacgtt tctatgctca
     5101 aagatatgga cgccatcctc gttcccggcg gtttcggttc gcgcggcgtg gaaggcaaaa
     5161 tcgccgctgt gcgctatgcc cgcgaaaaca acgtgccata cttgggcatc tgcctcggta
     5221 tgcagattgc gctgatcgaa tacgcccgcg acgtggcagg tttgaaaggt gcgaattcca
     5281 ccgagttcga cctcaaatgc gccgcccccg tcgttgccct gattgacgaa tggcaaactg
     5341 ccgacggcag cgtcgaaacc cgcgacgaat ccgccgattt gggcggcacc atgcgtttgg
     5401 gcgcgcaaga agtcgaattg aaaacaggca gcctcgccgc caaaatctac ggcagcggac
     5461 acatccgcga acgccaccgc caccgctacg aagtcaacaa caactatgtt cctacgctgg
     5521 aacaggcagg tttggtcatc ggcggcgtat ccgccggacg cgaacgcttg gtcgaaacca
     5581 tcgaactgcc gaaccatcct tggttcttcg cctgccagtt ccaccccgag tttacctcca
     5641 atccgcgcaa agggcatcct ttgttcaccg cgtttgtcaa agctgcgttg aacaataaaa
     5701 aagcctgata aagcgttact tgatgatcaa aatgccgtct gaaagcctga atgaagactt
     5761 tcagacggca ttttcgcaaa tcggggatta taaaagccat caatttaatt tttatggttt
     5821 tatctaatat ttaccaactg aatattgtta agcggggcgt gaaactcaag ttgagacctt
     5881 tgcaaaattc cccaaaatcc cctaaattcc caccaagaca tttaggagca ccttcttccg
     5941 gcaaacc
//
LOCUS       DAXHPV010000124         5742 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.124, whole genome shotgun sequence.
ACCESSION   DAXHPV010000124 DAXHPV010000000
VERSION     DAXHPV010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5742)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5742)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5742
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.124"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(128..889)
                     /locus_tag="ACFM6C_001614"
     CDS             complement(128..889)
                     /locus_tag="ACFM6C_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159048.1"
                     /translation="MDANKEPNWEKRLENLRQTRRMKAVPTYAPLSRPSETGTDAPVP
                     KLDDESRARVLKAYLKKWQEEHNAAVADCGEEVETDPMIVLQENWLNAQASLQMSVSE
                     KHIESRRRIRFDAKKDSAEFETGQIEGGENADAAESGTAADGVAENGEGGAEEALMPV
                     QINILNPKAVNRREVFCLSEQELTERLIKRLRPHLTDTVNGIIRTAVQKQMAVFTYQL
                     QQMLHEQAGAVVEDVLEHDVRKILNDIKYELKYKR"
     gene            989..1240
                     /locus_tag="ACFM6C_001615"
     CDS             989..1240
                     /locus_tag="ACFM6C_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159049.1"
                     /translation="MSSIEQRLEYLEEANDVLRMQNHVLSTAFKALIRALPAETAEVA
                     VESIQLAFEDALAELSYEDSPHTDLFHDVTYAFFREKER"
     gene            1292..2098
                     /locus_tag="ACFM6C_001616"
     CDS             1292..2098
                     /locus_tag="ACFM6C_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HFC6159050.1"
                     /translation="MNMKKWIAAALACSALALSACGGQGKDAAAPAANPDKVYRVASN
                     AEFAPFESLDSKGNVEGFDVDLMNAMAKAGNFKIEFKHQPWDSLFPALNNGDADVVMS
                     GVTITDDRKQSMDFSDPYFEITQVVLVPKGKKISSSDDLKNMNKVGVVTGYTGDFSVS
                     KLLGNDNPKIARFENVPLIIKELENGGLDSVVSDSAVIANYVKNNPTKGMDFVTLPDF
                     TTEHYGIAVRKGDEATVKMLNDALEKVRESGEYDKIYAKYFAKEDGQAAK"
     gene            2405..3928
                     /locus_tag="ACFM6C_001617"
     CDS             2405..3928
                     /locus_tag="ACFM6C_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase"
                     /protein_id="HFC6159051.1"
                     /translation="MTVIKQEDFIQSICDAFQFISYYHPKDYIDALYKAWQKEENPAA
                     KDAMTQILVNSRMCAENNRPICQDTGIATVFLKVGMDVQWDADMSVEEMVNEGVRRAY
                     TWEGNTLRASVLADPAGKRQNTKDNTPAVIHMSIVPGDKVEVTCAAKGGGSENKSKLA
                     MLNPSDNIVDWVLKTIPTMGAGWCPPGILGIGIGGTPEKAVLMAKESLMSHIDIQELQ
                     EKAASGAELSTTEALRLELFEKVNALGIGAQGLGGLTTVLDVKILDYPTHAASKPIAM
                     IPNCAATRHVEFELDGSGPVELTSPRVEDWPDLTYSPDNGKRVDVDKLTKEEVASWKT
                     GDVLLLNGKILTGRDAAHKRLVDMLNKGEELPVDFTNRLIYYVGPVDPVGDEVVGPAG
                     PTTATRMDKFTRQMLEQTDLLGMIGKSERGAAACEAIADNKAVYLMAVGGAAYLVAKA
                     IKSSKVLAFPELGMEAIYEFEVKDMPVTVAVDSKGESIHATAPRKWQAKIGIIPVES"
     gene            4026..5438
                     /gene="trkA"
                     /locus_tag="ACFM6C_001618"
     CDS             4026..5438
                     /gene="trkA"
                     /locus_tag="ACFM6C_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HFC6159052.1"
                     /translation="MKILILGNGQVGSTVAQNLAAIPNNDVTVIDIDEKALQETGSRL
                     DVQTVFGNGASPFTLERAGAEDADLLLALSRSDETNIVACKVAADLFNIPGRIARVRS
                     SEYLEYLSPKLENNENGSLSIFGITETISPEQLVTEQLAGLIDCPGALQVLRFADDRV
                     RMVIIQARRGGLLVGRSIADIAQDLPDGADCQICAVYRNNRLIVPAPQTVIIEGDEIL
                     FAAAAENIGAVIPELRPKETSTRRIMIAGGGNIGYRLAKQLEHAYNVKIIECRPRRAE
                     WIAENLDNTLVLQGSATDETLLDNEYIDEIDVFCALTNDDESNIMSALLAKNLGAKRV
                     IGIVNRSSYVDLLEGNKIDIVVSPHLITIGSILAHIRRGDIVAVHPIRRGTAEAIEVV
                     AHGDKKTSAIIGRRISGIKWPEGCHIAAVVRAGTGEVIMGHHTETVIQDGDHIIFFVS
                     RRRILNELEKLIQVKMGFFG"
BASE COUNT         1447 a         1722 c         1396 g         1177 t
ORIGIN      
        1 cggcttcgtc gccttgtcct gatttttgtt aatccactat attaatattt tgcgcctgtt
       61 ctatgatgct ttcaagtcgg gtgagaatgc aaatgccgtc tgaaacggct ttcagacggc
      121 atggcaatca gcgtttgtat tttaactcgt acttgatgtc gttgaggatt ttgcggacat
      181 cgtgttccaa cacgtcttcg actaccgcac ccgcctgctc gtgcagcatc tgctggagct
      241 gataggtaaa aaccgccatc tgcttttgca ccgccgtacg gatgataccg ttgacggtat
      301 cggtcagatg cgggcgcagg cgtttgatca gccgttcggt cagctcctgt tcggacaggc
      361 agaacacttc gcgccggttg acggctttcg ggttcagaat attgatttgg acgggcatca
      421 acgcttcttc cgcaccgcct tcgccgtttt ccgcaacccc gtctgccgcc gtacccgatt
      481 ctgccgcatc ggcgttttcc ccgccttcaa tctgtccggt ttcaaattcg gcactgtctt
      541 ttttggcatc aaaccggatt ctccgccgcg attcgatgtg tttttccgaa accgacattt
      601 gcagggaagc ctgcgcgttg agccagtttt cctgaaggac gatcatcggg tcggtttcga
      661 cttcctcgcc gcaatcggca acggcggcat tgtgttcctc ctgccatttt ttcagatacg
      721 ccttcaacac acgggctcgg ctctcatcgt ccagtttcgg cacaggcgcg tccgttccgg
      781 tttcagaggg gcgggacagc ggcgcgtaag tcggcactgc cttcatacgg cgcgtctgac
      841 gcaggttttc caaacgtttt tcccaattcg gctctttatt cgcatccatt ttcggcttcc
      901 ggttcttaat ctttgcaggc agacaaaccc gcgcccaaag cgcggtttga tataatggcg
      961 cattttaaca gattcgcgag gatacatcat gagcagcatc gaacagcgtt tggaatatct
     1021 ggaagaggcg aacgacgtgc tgcgtatgca gaaccacgtc ctgtccaccg ccttcaaagc
     1081 cctaatccgc gcccttcccg ccgaaaccgc cgaagtcgcg gtcgagtcga ttcagcttgc
     1141 ttttgaagac gcactggcgg aattgagcta tgaggacagc ccgcatacgg atttgttcca
     1201 cgacgttact tatgcgtttt tccgtgaaaa ggaacgttaa ttttatgtta aactgatttt
     1261 ttaggctttt tgattaccga aaggaatttt gatgaatatg aaaaaatgga ttgccgccgc
     1321 ccttgcctgt tccgcgctcg cgctgtctgc ctgcggcggt cagggcaaag atgccgccgc
     1381 acctgccgca aaccccgaca aagtgtaccg cgtggcttcc aacgccgagt ttgccccctt
     1441 tgaatcttta gactcgaaag gcaatgtcga aggtttcgat gtggatttga tgaacgcgat
     1501 ggcgaaggcg ggcaatttta aaatcgaatt caaacaccag ccgtgggaca gccttttccc
     1561 cgccttgaac aacggcgatg cggacgttgt gatgtcgggc gtaaccatta ccgacgaccg
     1621 caaacagtct atggacttca gcgacccgta ttttgaaatc acccaagtcg tcctcgttcc
     1681 gaaaggcaaa aaaatatctt cttccgacga tttgaaaaac atgaacaaag tcggcgtggt
     1741 aaccggctac acgggcgatt tctccgtatc caaactcttg ggcaacgaca acccaaaaat
     1801 cgcgcgcttt gaaaacgttc ccctgattat caaagaactg gaaaacggcg gcttagattc
     1861 cgtagtcagc gacagcgcgg tcatcgccaa ttatgtgaaa aacaatccga ccaaagggat
     1921 ggacttcgtt accctgcccg acttcaccac cgaacactac ggcatcgcgg tacgcaaagg
     1981 cgacgaagca accgtcaaaa tgctgaacga tgcgttggaa aaagtacgcg aaagcggcga
     2041 atacgacaag atttacgcca aatattttgc aaaagaagac ggacaggccg caaaataagc
     2101 ccgcccgtcc gaacacaatg ccgtctgaag ccctttcaga cggcattgtt catcaatcgg
     2161 cctacaatga actgcctgct gatttctccc taccgcaaag caacaggcaa agattacaaa
     2221 tatcaaaatc cgagtaaaac agtattttat taaaacaaat tgataatcaa gagattagaa
     2281 ttatgtattg tctttaccgt acaaacgctg gcactatttc aacctgataa aaaacagcct
     2341 tcaaaaaggt tgtttaaaac agcagcagac acttaccgcc acaaccttga aaaggaacac
     2401 aatcatgacc gtcatcaaac aggaagactt tatccaaagc atttgcgatg ccttccaatt
     2461 catcagctac taccatccca aagactacat cgacgcgctc tataaagcgt ggcagaagga
     2521 agaaaacccc gccgccaaag acgcgatgac gcagattttg gtcaacagcc gcatgtgtgc
     2581 cgaaaacaac cgccccatct gccaagacac aggtatcgca accgtgtttt tgaaagtcgg
     2641 tatggatgtg cagtgggatg cggacatgag cgtggaagaa atggttaacg aaggcgtgcg
     2701 ccgcgcctac acttgggaag gcaacaccct gcgcgcctct gtcctcgccg atccggccgg
     2761 caaacgtcaa aacaccaaag acaacacccc cgccgtcatt catatgagca tcgtgccggg
     2821 cgacaaagtc gaagtaacct gcgcggcaaa aggcggcggt tctgaaaaca aatccaaact
     2881 cgccatgctc aacccttccg acaacatcgt cgattgggta ttgaaaacca ttccgaccat
     2941 gggcgcgggc tggtgtcctc ccggcatctt gggcatcggc atcggcggta cgcctgaaaa
     3001 agccgtgttg atggcaaaag agtccctgat gagccacatc gacatccaag aattgcagga
     3061 aaaagccgcg tccggcgcag aattgtccac caccgaagcc ctgcgcctcg aactctttga
     3121 aaaagtcaac gcgctgggca tcggcgcaca aggcttgggc ggactgacca ccgtgttgga
     3181 cgtgaaaatc ctcgattatc cgacccatgc cgcctccaaa ccgattgcca tgattccgaa
     3241 ctgcgccgcc acccgccacg tcgagttcga attggacggc tcaggccctg tcgaactcac
     3301 atcgccgcgc gtcgaagact ggcccgattt gacttacagc cccgacaacg gcaaacgcgt
     3361 cgatgtcgat aagctgacca aagaagaagt ggcaagctgg aaaaccggcg acgtattgct
     3421 gctgaacggc aaaatcctca ccggccgcga tgccgcacac aaacgcctcg tcgatatgct
     3481 caacaaaggc gaagaattgc ccgtcgattt caccaaccgc ctgatttact acgtcggtcc
     3541 cgtcgatccg gtcggcgatg aagtcgtcgg tccggcaggt ccgaccacag ccacccgcat
     3601 ggacaaattc acccgccaaa tgctcgaaca aaccgacctc ttgggcatga tcggcaaatc
     3661 cgagcgcggc gcggcggcgt gcgaagccat cgccgacaac aaagccgtgt acctcatggc
     3721 agtcggcggc gcggcgtatc tcgtggcaaa agccatcaaa tcttccaaag tcttggcgtt
     3781 ccccgaattg ggcatggaag ccatttacga atttgaagtc aaagacatgc ccgtaaccgt
     3841 cgccgtagat agcaaaggcg aatccatcca cgccaccgcc ccgcgcaaat ggcaggcgaa
     3901 aatcggcatc atccccgtcg aatcttgagg caccatgccg tctgaacaca aaatctgcct
     3961 tcagacggca tttccgcccc cggttgcggt acaatccacc atttcattac tcggcgaccc
     4021 acaccgtgaa aatcctcatt ttaggcaacg gacaggtagg ttctaccgtc gcacaaaacc
     4081 ttgccgccat acccaacaac gacgtaaccg ttatcgacat cgacgaaaaa gcattgcagg
     4141 aaacaggcag ccgcctcgat gtccaaaccg ttttcggcaa cggcgcatcc cccttcacat
     4201 tagaacgcgc cggcgcggaa gatgccgact tgctgctcgc gctctcccgc agcgacgaaa
     4261 ccaacatcgt cgcctgcaaa gttgccgccg acctgttcaa catccccggc cgcatcgcgc
     4321 gcgtccgttc cagcgaatac ctcgaatacc tcagccccaa gctcgaaaac aacgaaaacg
     4381 gcagcctttc catattcggc ataaccgaaa ccatcagccc cgaacagctc gttaccgaac
     4441 agcttgccgg cctgatagac tgcccgggcg cattgcaggt tttacgtttt gcagacgacc
     4501 gcgtgcggat ggtcatcata caggcgcggc gcggcggact gcttgtcgga cgcagcattg
     4561 ccgacatcgc ccaagatttg cccgacgggg ccgactgcca aatctgcgcc gtttaccgca
     4621 acaaccgcct catcgtcccc gcgccgcaaa ccgtcatcat cgaaggcgac gaaatcctgt
     4681 ttgccgccgc cgccgaaaac atcggcgcgg tcatacccga attgcgcccc aaagaaacca
     4741 gcacccgccg catcatgatt gccggcggcg gcaacatcgg ctaccgtctc gccaagcagc
     4801 tcgaacacgc atacaacgtc aaaatcatcg aatgccggcc gcgccgtgcc gaatggatag
     4861 ccgaaaacct cgacaacacc ctcgtcctgc aaggttcggc aaccgacgaa accctgctcg
     4921 acaacgaata catcgacgaa atcgacgtat tctgcgccct gaccaacgac gacgaaagca
     4981 acattatgtc cgcccttttg gcgaaaaacc tcggcgcgaa gcgcgtcatc ggcatcgtca
     5041 accgctcaag ctacgtcgat ttgctcgaag gcaacaaaat cgacatcgtc gtctcccccc
     5101 acctcatcac catcggctcg atactcgccc acatccggcg cggcgacatc gttgccgtcc
     5161 accccatccg gcgcggcacg gcggaagcca tcgaagtcgt cgcacacggc gacaaaaaaa
     5221 cttccgccat catcggcagg cgcatcagcg gcatcaaatg gcccgaaggc tgccacattg
     5281 ccgccgtcgt ccgcgccgga accggcgaag tcattatggg acaccatacc gaaaccgtca
     5341 tccaagacgg cgaccacatc atctttttcg tctcgcgccg gcgcatcctg aacgaactgg
     5401 aaaaactcat ccaagtcaaa atgggctttt tcggataaac cgccccattc cggacatatt
     5461 gccgccaagc ggtatggaag cggaaataat ggtaggtggg cttcagacgg catccgccct
     5521 ccccgtcatt cccgcgtaag cgggaatcca gaccttggga tagcggcaat attcaaaggt
     5581 tataaaagac ccgtcattcc cgcgcaggcg ggaatccaga ccttgggata gcggcaatat
     5641 tcaaaggtta tctgaaaatt tagaggttct agattcccgc tttcgcggga atgacgaaaa
     5701 gttgcgggaa tccagaacgt cgggcaacgg caatattcaa aa
//
LOCUS       DAXHPV010000125         5665 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.125, whole genome shotgun sequence.
ACCESSION   DAXHPV010000125 DAXHPV010000000
VERSION     DAXHPV010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5665)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5665)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5665
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.125"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            72..998
                     /gene="fabD"
                     /locus_tag="ACFM6C_001619"
     CDS             72..998
                     /gene="fabD"
                     /locus_tag="ACFM6C_001619"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HFC6159053.1"
                     /translation="MSFAFFFPGQGSQSLGMMNGFAEHAIVKNTFAEASAILGQDLWA
                     MINGSDAEIIGQTVNTQPIMLAAGVAVYRAYLEAGGKTPAAVAGHSLGEYTALVAAGA
                     LDFTDAVKLVRLRAELMQSAVPQGVGAMAAILGLEDEQVRQICTESAQGEVVEAVNFN
                     SPGQVVIAGNAAAVERAMTAAKEAGAKRALPLPVSVPSHCSLMKPAADKLAEALKTVE
                     IKQPQIRVIHNADVAAYDDADKIKDALVRQLYSPVRWTETVNALVSDGIAESAECGPG
                     KVLAGLAKRINKAAACSALTDAGQVAAFIETH"
     gene            1137..3002
                     /gene="msbA"
                     /locus_tag="ACFM6C_001620"
     CDS             1137..3002
                     /gene="msbA"
                     /locus_tag="ACFM6C_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005319 - lipid transporter activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006869 - lipid transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A export permease/ATP-binding protein
                     MsbA"
                     /protein_id="HFC6159054.1"
                     /translation="MIEKLTFGLFKKEDARSFMRLMAYVRPYKIRIVAALIAIFGVAA
                     TESYLAAFIAPLINHGFSAPAAPPELSAAAGILSTLQNWREQFTYMVWGTENKIWTVP
                     LFLIILVIIRGICRFTSTYLMTWVSVMTISKIRKDMFAKMLTLSSRYHQETPSGTVLM
                     NMLNLTEQSVSNASDIFTVLTRDTMIVTGLTIVLLYLNWQLSLIVVLMFPLLSLLSRY
                     YRDRLKHVISDSQKSIGTMNNVIAETHQGHRVVKLFNGQAQAANRFDAVNRTIVRLSK
                     KITQATAAHSPFSELIASIALAVVIFIALWQSQNGYTTIGEFMAFIVAMLQMYAPIKS
                     LANISIPMQTMFLAADGVCAFLDTPPEQDKGTLALQRVEGRISFRNVDVEYRSDGIKA
                     LDNFNLDIRQGERVALVGRSGSGKSTVVNLLPRFVEPSAGNICIDGIDIADIKLDCLR
                     AQFALVSQDVFLFDDTLFENVRYSRPDAGEAEVLSALQAANLQSLIDSSPLGLHQPIG
                     SNGSNLSGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLMENRTGI
                     IVAHRLTTIEGADCIIVMDDGKIIEQGTHEQLMSQNGYYTMLRNISNKDAAVRTA"
     gene            3102..4667
                     /gene="guaA"
                     /locus_tag="ACFM6C_001621"
     CDS             3102..4667
                     /gene="guaA"
                     /locus_tag="ACFM6C_001621"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HFC6159055.1"
                     /translation="MTQDKILILDFGSQVTQLIARRVREAHVYCELHSFDMPLEEIKA
                     FNPKGIILSGGPNSVYESDYQADTGIFDLGIPVLGICYGMQFMAHHLGGEVSPGNQRE
                     FGYAQVKTIDSELTRGIQDDAPNTLDVWMSHGDKVSKLPDGFAVIGDTPSCPIAMMEN
                     AEKRFYGIQFHPEVTHTKQGRALLNRFVLDICGAQPSWTMPNYIEEAVAKIREQVGSD
                     EVILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVMDMFARNLGVKVI
                     HVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAKEKKLTNAKWLAQGTIYPDVIES
                     AGAKTQKAHAIKSHHNVGGLPENMKLKLLEPLRDLFKDEVRELGVALGLPREMVYRHP
                     FPGPGLGVRILGEVKKEYADLLRQADDIFIQELRNTTDENGTSWYDLTSQAFAVFLPV
                     KSVGVMGDGRTYDYVVALRAVITSDFMTAHWAELPYSLLGRVSNRIINEVKGINRVVY
                     DVSGKPPATIEWE"
     gene            4729..5475
                     /gene="fabG"
                     /locus_tag="ACFM6C_001622"
     CDS             4729..5475
                     /gene="fabG"
                     /locus_tag="ACFM6C_001622"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein]
                     reductase (NADPH) activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HFC6159056.1"
                     /translation="MSTQDLSGKIALVTGASRGIGAAIADTLAAAGAKVIGTATSESG
                     AAAISERLAQWGGEGRVLNSAEPETVENLIADLEKTFGKLDILVNNAGITRDNLLMRM
                     KEEEWDDIMQVNLKSVFRASKAVLRGMMKQRAGRIINITSVVGVMGNAGQTNYAAAKA
                     GLIGFSKSMAREVGSRGITVNCVAPGFIDTDMTRALPEETRQAFTAQTALGRFGDAQD
                     IADAVLFLASDQAKYITGQTLHVNGGMLMP"
BASE COUNT         1370 a         1822 c         1384 g         1089 t
ORIGIN      
        1 tttcgttccg cccgaacttt ttgtaaaact cgggcagaat acctgattat ccaaccaaat
       61 aaaggaatac catgtctttt gccttctttt ttcccggaca aggttcccaa agcctcggta
      121 tgatgaacgg ctttgccgaa cacgccatcg tcaaaaacac atttgccgaa gcctccgcca
      181 tattggggca ggacttgtgg gcgatgatta acggcagcga tgccgaaatc atcggtcaaa
      241 ccgtcaacac ccagcccatt atgctcgccg ccggcgttgc cgtttaccgc gcctatttgg
      301 aagcgggcgg caaaacgcct gccgccgttg ccggacacag cctcggcgaa tacaccgcac
      361 tcgttgccgc cggcgcattg gattttaccg atgccgtcaa actcgtgcgc ctgcgcgccg
      421 aactgatgca gtccgccgta ccgcaaggcg tgggcgcaat ggcggcgatt ctcggcttgg
      481 aagatgaaca ggtcaggcag atttgcaccg aatccgcaca gggcgaagtg gtcgaagccg
      541 tcaacttcaa ctcgcccgga caagtcgtga ttgcaggcaa tgccgccgcc gtcgagcgcg
      601 ccatgaccgc cgccaaagaa gccggtgcca aacgcgccct gccgctgccc gtgtccgtac
      661 cttcccattg cagcctgatg aaacccgccg ccgacaaact tgccgaagcc ctgaaaaccg
      721 ttgaaatcaa gcagccgcaa atccgcgtca tccacaatgc tgacgttgcc gcctacgatg
      781 atgccgacaa aatcaaagac gcgctcgtcc gccagcttta cagccccgta cgctggacag
      841 aaaccgtcaa cgcccttgtt tcagacggca ttgccgaatc cgccgaatgc ggcccgggca
      901 aagttttggc gggcttggca aaacgcatca acaaagccgc cgcgtgcagc gcgctgaccg
      961 atgccggaca ggttgccgcc tttatcgaaa cgcactgact tcgttccgca aaaagcagcc
     1021 tgcatgcctc aggctgcttt tcacgtccga acggcaaaca gccgcatatt tgcgctataa
     1081 ttgatgacga ccaaaccacc gacagcggct gccgttgcag ttcccgccct accgatatga
     1141 tagaaaaact gactttcgga ctgtttaaaa aagaagacgc gcgcagcttt atgcgcctga
     1201 tggcatacgt ccgcccctac aaaatccgca tcgttgccgc cctgattgcc attttcggcg
     1261 ttgccgccac cgaaagctac cttgccgcct tcatcgcccc cctgattaac cacggctttt
     1321 ccgcacccgc cgcgccgccc gagctgtctg ccgccgccgg catcctttcc accctgcaaa
     1381 actggcgcga acagtttacc tatatggttt gggggacgga aaacaaaatc tggaccgtcc
     1441 cgctcttcct catcatcctc gtcatcatcc ggggcatctg ccgctttacc agcacctatc
     1501 tgatgacttg ggtctccgtg atgaccatca gcaaaatccg caaagatatg tttgccaaaa
     1561 tgctgaccct ttcctcccgc taccatcagg aaacgccgtc cggcaccgta ctgatgaata
     1621 tgctcaacct gaccgaacag tcggtcagca acgccagcga catcttcacc gtcctcacgc
     1681 gcgacacgat gatcgttacc ggcctgacca tcgtcctgct ttacctcaac tggcagctca
     1741 gcctcatcgt cgtcctgatg ttccccctgc tctccctgct ctcgcgctac taccgcgacc
     1801 gtctgaaaca cgtcatttcc gactcgcaaa aaagcatagg cacgatgaac aacgtgattg
     1861 ccgaaaccca tcagggacac cgcgtcgtca agctgttcaa cgggcaggcg caggcggcaa
     1921 accggttcga cgcggtcaac cgcaccatcg tccgcctcag caaaaaaatc acgcaggcaa
     1981 cggcggcgca ttccccgttc agcgaactga ttgcctcgat cgccctcgcc gtcgtcatct
     2041 tcatcgccct gtggcaaagc caaaacggct acaccaccat cggcgaattt atggcattca
     2101 tcgtcgccat gctgcaaatg tacgccccca tcaaaagcct tgccaacatc agcatcccta
     2161 tgcagacgat gttcctcgcc gccgacggtg tatgtgcatt tctcgacacc ccgcccgaac
     2221 aggacaaagg cacactcgcg ctgcagcgtg tcgaagggcg catcagcttc cgcaacgtcg
     2281 atgtcgaata ccgttcggac ggcatcaaag ccctcgacaa cttcaacctc gacatcagac
     2341 aaggcgaacg cgtcgccctg gtcggacgtt ccggcagcgg caaatccacc gtcgtcaacc
     2401 tgctgccccg ctttgtcgaa ccgtctgccg gcaacatctg catagacggt atcgacatcg
     2461 ccgacatcaa actcgactgc ctgcgcgccc aattcgccct cgtctcccaa gacgtattcc
     2521 tgtttgacga caccctgttt gaaaacgtcc gatacagccg tcccgacgcg ggcgaagccg
     2581 aagtcctgtc cgccctccaa gccgccaacc tgcaaagcct gattgacagt tccccgctcg
     2641 ggctgcacca gcccatcgga tcgaacggca gcaacttgtc cggcggacag cggcaacgcg
     2701 tcgctattgc ccgcgccatt ttgaaagacg cgccgatatt attattggac gaagccacca
     2761 gcgcattgga caacgaatcc gaacgcctcg tccaacaagc gctcgaacgc ctgatggaaa
     2821 accgcaccgg catcatcgtc gcccaccgcc tgaccaccat cgaaggggcc gactgcatca
     2881 tcgtaatgga cgacggcaaa atcatcgaac aaggcacaca cgaacaactg atgtcccaaa
     2941 acggctacta cacgatgtta cgcaatatct caaacaaaga tgccgccgtc cggacggcat
     3001 aaacaaaatg ccgtctgaaa tggtacaatc gccccgaccc tttcagacgg catcatatcc
     3061 gccgacccat ccgattatct tcaatcactg taaaacccat tatgacccaa gacaaaatcc
     3121 tcatccttga cttcggttcg caagttaccc agctcatcgc ccgccgcgtg cgcgaagccc
     3181 acgtttactg cgagctgcat tccttcgata tgcctttgga agaaatcaaa gccttcaatc
     3241 cgaaaggcat catcctttcc ggcggcccca attccgttta cgaatccgac tatcaagccg
     3301 ataccggcat ttttgatttg ggcattccag ttttgggcat ctgctacgga atgcagttta
     3361 tggcgcacca cttgggcggc gaagttagcc cgggcaacca acgcgaattc ggttatgcgc
     3421 aagtcaaaac catcgacagc gagctgacac gcggcattca agatgatgcg ccaaacacgc
     3481 tcgacgtatg gatgagccac ggcgacaaag tgtccaaact gcccgacggt ttcgccgtca
     3541 tcggcgacac cccgtcctgc ccgattgcca tgatggaaaa cgccgaaaaa cgattctacg
     3601 gcatccagtt ccaccccgaa gttacccaca ccaaacaagg ccgcgccctg ttgaaccgct
     3661 ttgtcttgga tatttgcggc gcacaaccga gctggacgat gccgaactac atcgaagaag
     3721 ccgttgccaa aatccgcgaa caagtcggca gcgacgaagt gattttaggt ttgtcaggcg
     3781 gcgtagactc ttccgtagcc gccgcgctga ttcaccgcgc catcggcgac caactgacct
     3841 gcgtgttcgt cgatcacggt ttgttgcgcc tgaacgaagg caaaatggtg atggatatgt
     3901 tcgcccgcaa cttgggtgtg aaagtgattc acgtcgatgc cgaagggcag tttatggcga
     3961 aactcgccgg cgttaccgac cctgagaaaa aacgcaaaat catcggcgcg gaatttatcg
     4021 aagtatttga tgccaaagag aaaaaactca ccaacgccaa atggctggcg caaggcacga
     4081 tttaccccga cgtaatcgaa tccgcaggcg cgaaaaccca aaaagcccac gccatcaaat
     4141 cgcaccacaa cgtcggcggt ctgcccgaaa atatgaagct caagctgctt gagccgttgc
     4201 gcgacttgtt taaagacgaa gtgcgcgaac tgggcgttgc tttgggtctg ccgcgcgaaa
     4261 tggtgtaccg ccatccgttc cccggccccg gtttgggcgt gcgcatcttg ggcgaagtga
     4321 aaaaagaata cgccgactta ttgcgtcaag cagacgatat tttcatccaa gaattacgca
     4381 acaccaccga cgaaaacggc acatcttggt acgacctgac cagccaggca tttgccgtat
     4441 tcctgcctgt gaaatccgtc ggcgtaatgg gcgacggacg cacttacgac tacgtcgtcg
     4501 cactgcgcgc agtcatcacc agcgacttca tgaccgcaca ctgggcagaa ctgccttact
     4561 cactgctcgg acgcgtgtcc aaccgcatca tcaacgaagt caaaggcatc aaccgcgtgg
     4621 tgtacgatgt cagcggcaaa ccgcctgcca ccatcgagtg ggaataacca gcaaacaggg
     4681 ctgcaccgtc cggcgcagtc tttcgattat cggaaaaaag gaaaaaatat gagcacacaa
     4741 gatttaagcg gcaaaatcgc tttggtaacc ggcgcatcgc gcggtatcgg tgcagcaatt
     4801 gccgacacac tggcggcagc cggtgccaaa gtcatcggta cggcgaccag tgagagcggt
     4861 gcggcggcga ttagcgagcg gttggcgcaa tggggcggcg aaggccgcgt attaaattcc
     4921 gccgaacccg aaaccgtcga aaacctgatt gccgacctcg aaaaaacgtt cggcaaactc
     4981 gatattctgg tcaacaacgc cggcatcacc cgcgacaacc tcctgatgcg catgaaagaa
     5041 gaagagtggg acgacatcat gcaggtcaac ctcaaatccg tgttccgcgc ttctaaagcc
     5101 gtcttgcgcg gcatgatgaa gcagcgcgcc ggccgtatca tcaacatcac atccgtcgtc
     5161 ggcgtgatgg gcaatgccgg tcaaaccaac tatgccgcgg caaaagcagg cttaatcggt
     5221 ttctccaaat ccatggcgcg cgaagtcggc agccggggca ttaccgtcaa ctgcgtcgcc
     5281 cccggcttta tcgataccga tatgacccgc gccctgccgg aagaaacccg ccaagccttt
     5341 accgcccaaa ccgccttggg cagattcggc gacgcgcaag acattgccga tgcggttttg
     5401 ttcctcgctt ccgatcaggc gaaatacatt accggccaga cgctgcacgt caacggcggc
     5461 atgctgatgc cctgacggac agccgtgccg acaatgccgt ctgaagccct ttcagacggc
     5521 atttgcattc ccaaacaaaa tgaacacaca ccacaccctg ccctgcccct gcggttcagg
     5581 cacaagctga gacctttgca aaactccttt ccctcccgac agccgaaacc caaacacagg
     5641 ttttcgtcta ttttcgcccc aaata
//
LOCUS       DAXHPV010000126         5658 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.126, whole genome shotgun sequence.
ACCESSION   DAXHPV010000126 DAXHPV010000000
VERSION     DAXHPV010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5658)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5658)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5658
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.126"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            98..814
                     /locus_tag="ACFM6C_001623"
     CDS             98..814
                     /locus_tag="ACFM6C_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HFC6159057.1"
                     /translation="MNFENDDIIHAPTTSSLILEERHDSELFRVYALILDGITDQVLL
                     PGKKLTESELCRQMVCSRNTVRGALSLLAHDKIVDLQPNRGAFVHVPDLKEMQDVFNA
                     RIEMETMILNILADLPDLETRLKPLYAMIRREEEASGRGDRVGWNRLSNAFHVELARL
                     VGNDVLFDIMNTLCARSSLIVAVAGVHREEKHAINTHTHSEHREILDLLLAGRRNRVV
                     KILRRHLGNCMERLEKTLED"
     gene            963..1865
                     /locus_tag="ACFM6C_001624"
     CDS             963..1865
                     /locus_tag="ACFM6C_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine exporter LysO family protein"
                     /protein_id="HFC6159058.1"
                     /translation="MDSLMTLLSVLVPMFAGFFIRVPKPYLPALDKVLSVLVYAVLLL
                     IGVSLSRVEDLGSRLDDMALTVLWLFVCTVGANLLALAVLGKLFPWRIKGKGKGVSVG
                     VSGSVGQLGCVLLGFAFGKLMRDIWMPSESAGMYCLMLLVFLIGVQLKSSGVSLRQVL
                     VNRRGIRLSVWFMLSSLSGGLLFAASTDGVSWTKGLAMASGFGWYSLSGLVMTEAYGA
                     VWGSIMLLNDLARELFALAFIPLLMKRFPDAAVGVGGATSMDFTLPVIQGAGGLEVVP
                     VAVSFGVVVNIAAPFLMVVFSTLG"
     gene            1908..2681
                     /locus_tag="ACFM6C_001625"
     CDS             1908..2681
                     /locus_tag="ACFM6C_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family DNA-binding transcription
                     regulator"
                     /protein_id="HFC6159059.1"
                     /translation="MKPKIQRHGEILSLVRRHQFMSVDELAAALDVTPQTIRRDIREL
                     EEAGSLKRHHGGASSGGNLPEGLPADRQTRCQNEKNAIARLIAEHIPDGSSLFVSIGT
                     TMEAVVSELVRRRGSLRVITNNIHAASIASARTDYTVIITSGVVRPLDGGITGVATVD
                     FINQFKVDYAVMSTHGVESDGSLLDDDYKEVSVMQAMIANARVRFLGVDHSKFRSNAL
                     VRLGDITAFDKVFTDRLPDTAMQKMLKEAGVECLIADAV"
     gene            2793..4481
                     /locus_tag="ACFM6C_001626"
     CDS             2793..4481
                     /locus_tag="ACFM6C_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004819 - glutamine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006425 - glutaminyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase/YqeY domain fusion
                     protein"
                     /protein_id="HFC6159060.1"
                     /translation="MLNKDQFADNHFIRTFIEEDLKSGKHETIQTRFPPEPNGYLHIG
                     HAKSICLNFGLAYIYDGLCNLRFDDTNPEKENDEYVNAIKEDVEWLGFHWAGEPRFAS
                     NYFDQLYDYAVGLVKDGKAYVDDLTPEEMREYRGTLTEAGKNSPYRDRSIEENLDLFT
                     RMKNGEFPDGSKTLRLKIDMASGNINMRDPVIYRIRRAHHHNTGDKWCIYPMYDYTHC
                     ISDAIEGITHSLCTLEFEAHRPLYDWVLDNIPAPHATRPRQYEFSRLELLYTITSKRK
                     LNQLVVEKHVSGWDDPRMPTISGMRRRGYTPEGLRLFAKRAGISKSENIVDMSVLEGA
                     IREELENSAPRLMAVLNPLKVTLTNFETGRTQSRRAAFHPNHEEMGDREVPVSQTIYI
                     EADDFAENPPKGFKRLIPGGEVRLRHGYVIKCDEVVKDEAGNVLELKCSIDHDTLGKN
                     PEGRKVKGVIHWVSAEHAAEIKVRLYDRLFTVERPDAVRGEDGEYLPFTDFLNPESVK
                     EITAYAEPAAKDLPAESRWQFERIGYFVTDRKDHGKDTPVFNRTVTLKDSWQPK"
     gene            4574..5530
                     /gene="gshB"
                     /locus_tag="ACFM6C_001627"
     CDS             4574..5530
                     /gene="gshB"
                     /locus_tag="ACFM6C_001627"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004363 - glutathione synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HFC6159061.1"
                     /translation="MKVLFIADPMASFKTYKDTTYAMMREMAKRGWRLFHTLSSGLSV
                     KNGLVVADASAFEFLGAQDDHDKNWFAAADKVQTALKAFDAVIMRTDPPFDMQYLYAT
                     QLLTLAEQQGAKVFNSGQSMRDFNEKLAILNFSRFTAPTLVTTRSADVRAFLKEHGDI
                     IIKPLDGMGGMGIFRLTEKDPNIGSILETLMQLDSRTIMAQRYIPEIVHGDKRILIIG
                     GEVVPYALARIPQNGETRGNLAAGGRGVAQELSERDREIAETLAPELKRRGILLAGLD
                     VIGSNLTEVNVTSPTGFQEIMKQKGFDVAAMFADAVAAWSVR"
BASE COUNT         1309 a         1545 c         1567 g         1237 t
ORIGIN      
        1 aatttgtgca atgctttaat tcctctgaca cgatttgaaa cacagccgcc ttaaaacatc
       61 ttaaaaaatt tgaaagcgta aaaatacgga aaacatcatg aactttgaaa acgacgacat
      121 tatccatgcg ccgaccacgt cttccctgat tctcgaagag cggcacgatt cggagctgtt
      181 ccgtgtttac gccctgattt tggacggcat taccgatcag gtgctgctgc ccggcaaaaa
      241 gctgaccgaa tccgaacttt gccgtcagat ggtgtgttcg cgcaacaccg tccgcggcgc
      301 gctgtcgctt ttggcgcacg acaagattgt cgatttgcaa cccaacaggg gcgcgttcgt
      361 ccacgttccc gatttgaaag aaatgcagga tgtgttcaat gcgcgcatcg aaatggagac
      421 gatgattttg aatatcctcg cagatttgcc ggatttggaa acgcgcctca agccgcttta
      481 tgcgatgata aggcgcgaag aagaggcttc cggcaggggc gaccgcgtcg gctggaaccg
      541 cctgtccaat gccttccacg tcgaactggc gcgcctggtg ggcaacgatg tgctgttcga
      601 cattatgaac acgctgtgcg cgcggtcttc cctgattgtc gccgtggcgg gcgtgcatcg
      661 cgaggaaaaa cacgccatca atacgcatac gcattccgaa caccgcgaaa tcctcgacct
      721 gctgctggcg ggcaggcgca accgcgtggt caaaatcctg cgccgccatt tgggcaactg
      781 tatggaacgc ttggaaaaga ctttggaaga ttgaatgccg gagcggataa gccgcctgaa
      841 ccttcaggcg gttttttaat ggcgaacctg atgccgtctg aaatatggat gcgggtatct
      901 gcaattttca gacggcaatt tttaaaccgc atatatcatg cggcaataaa ggaggtcagg
      961 agatggacag cctgatgaca ttgctttcgg tattggtacc gatgttcgcc ggatttttta
     1021 tccgtgtgcc caagccttac ctgcccgctt tggacaaggt gctgtcggtt ttggtgtatg
     1081 ccgtgctgct gctgatcggc gtatcgttgt cgcgcgtgga ggatttgggt tcgcggttgg
     1141 acgatatggc gttgacggtt ctgtggctgt ttgtttgtac ggtcggggcg aacctgcttg
     1201 ctttggcagt gttgggaaag ttattcccgt ggcggataaa ggggaaaggg aagggcgttt
     1261 cggtcggcgt gtcgggcagt gtggggcagc tcggatgcgt gctgctcgga tttgcattcg
     1321 gcaaactgat gcgcgatatt tggatgccgt ctgaaagcgc gggcatgtat tgtctgatgc
     1381 tgctggtgtt cctcatcggc gtacagctca aaagcagcgg cgtatcgttg cggcaggttt
     1441 tggtcaaccg caggggtatt cggttgtcgg tctggtttat gctttcatct ctttcgggcg
     1501 ggctgctgtt tgccgcatcg acagacggtg tgtcgtggac gaaaggtttg gcgatggctt
     1561 ccggcttcgg ttggtattcc ctctcgggtt tggtcatgac cgaggcttac ggcgcggtat
     1621 ggggcagcat catgctgctg aacgatttgg cacgagagct gtttgcactg gcatttatcc
     1681 cgctgctgat gaagcgtttt ccggatgcgg cggtgggggt tggcggtgcg accagtatgg
     1741 attttacatt gcccgtgatt cagggtgcgg gcggtttgga agtcgtgccg gtagcggtca
     1801 gcttcggcgt ggtggtcaat attgccgccc cgtttctgat ggtggtgttt tccacgctgg
     1861 gctgaacacg gtaaaatcgg catcccgatg caaggaggca gaaaacgatg aaaccgaaaa
     1921 tccaaaggca cggagagatt ttaagccttg tccgccggca tcagtttatg tcggtggacg
     1981 agcttgccgc cgcattggac gttaccccgc agacgatacg ccgcgacatc cgcgagttgg
     2041 aggaggccgg cagcctgaaa cgccatcacg gcggcgcatc ttcgggcgga aacttgccgg
     2101 agggcctgcc cgccgaccgc caaacccggt gtcaaaacga aaaaaacgcc attgcccggc
     2161 tgattgcgga acacatcccc gacggttcgt cgctgtttgt cagtatcggc acgacgatgg
     2221 aggccgtggt gtcggagctg gtcaggcggc gcggcagcct gagggtgatt accaacaata
     2281 tccacgccgc ctcgattgct tcggcgcgga cggattatac ggtcattatc acttctggag
     2341 tcgtccgtcc tttggacggc ggtattaccg gcgtggcaac cgtcgatttt atcaaccagt
     2401 tcaaagtcga ttatgccgtg atgagtacgc acggcgtgga aagcgacggt tcgcttttgg
     2461 acgacgacta caaagaagtc agcgtgatgc aggcgatgat tgccaacgcg cgcgtccgct
     2521 tcctcggcgt ggatcacagc aaattccgca gcaacgcgct ggtcaggctt ggcgacatta
     2581 cggcgtttga caaagtattt accgaccggc tgcccgatac cgcgatgcag aagatgctga
     2641 aagaggcggg ggtggaatgc ctgattgccg atgccgtctg aacgctatgt caaagcgcgc
     2701 aagtcgggta caataaacac atcatcaaac cgcttcagac ggcataagga accgccccaa
     2761 tgccgtctga agccatctgt tcaaagaaaa ctatgctcaa taaagaccaa tttgcggaca
     2821 accattttat ccgcaccttc atcgaagaag acctcaaaag cggcaaacac gaaaccatcc
     2881 aaacccgttt tccgccggag cccaacggct acctgcacat cggacacgcc aaatccatct
     2941 gcctgaactt cggtttggcg tatatttacg acggcttgtg caacctgcgt tttgacgata
     3001 ccaaccccga aaaagaaaac gacgaatacg tcaacgccat caaagaagac gttgagtggc
     3061 tcggtttcca ttgggcgggc gagccgcgtt tcgcttccaa ctatttcgac cagctttatg
     3121 actacgccgt cggtttggtt aaagacggca aagcgtatgt cgatgatttg acgccagaag
     3181 aaatgcgcga ataccgcggt acgctgaccg aagcaggcaa aaacagccct tatcgcgacc
     3241 gcagtatcga agaaaacctc gacctgttca cgcgcatgaa aaacggtgag ttccccgacg
     3301 gcagcaaaac cctgcgcctg aaaatcgaca tggcatccgg caacatcaat atgcgcgatc
     3361 cggtcatcta ccgcatccgc cgcgcccatc accacaacac cggcgacaaa tggtgcatct
     3421 atccgatgta cgactacacg cattgtattt ccgatgccat cgaaggcatc acgcattcct
     3481 tgtgtacgct tgagtttgaa gcccatcgtc cgctgtatga ctgggtgttg gacaacatcc
     3541 ccgcgccgca cgccacacgt ccgcgccaat acgagttttc acgcttggag cttttgtaca
     3601 ccattacctc caaacggaaa ttgaatcagt tggttgtgga aaaacacgtt tccggctggg
     3661 acgatccgcg tatgccgacc atttccggta tgcgccgacg cggctacacg cccgaagggc
     3721 tgcgcctgtt tgccaaacgc gccggtattt ccaaatctga aaacatcgtc gatatgagcg
     3781 tgttggaagg cgcgattcgc gaagagttgg aaaattccgc cccacgcctg atggcggtgt
     3841 tgaacccgct caaagtaacc ctgaccaact ttgaaaccgg cagaacccaa agccgccgtg
     3901 ccgcgttcca tccgaaccac gaagaaatgg gcgatcgcga agtacctgtt tcacaaacca
     3961 tttacatcga agccgacgac tttgccgaaa atccgcccaa aggcttcaaa cgcctgattc
     4021 ccggcggcga agtacgcttg cgccacggct atgtcatcaa gtgcgatgaa gtcgtcaaag
     4081 acgaagcagg caatgtgctt gaactcaaat gcagcatcga ccacgacacc ttgggcaaaa
     4141 atccagaagg ccgtaaagtt aaaggcgtga ttcattgggt ttccgccgaa cacgccgccg
     4201 aaatcaaagt ccgtctgtac gaccgcctct ttaccgtcga gcgtcccgat gccgtgcgcg
     4261 gcgaagacgg cgaatacctg ccgttcaccg atttcctcaa tccggaatcc gtcaaggaaa
     4321 tcaccgccta cgccgaacct gccgccaaag atttgccggc agaaagccgt tggcagttcg
     4381 agcgtatcgg ctacttcgta accgaccgta aagaccacgg caaagacacg ccggtgttta
     4441 accgcacggt cacgctgaaa gattcttggc agcctaagta aaaccccatc cttgccgtct
     4501 gaatattgtt cggacggcat ttcccctttg cccgcgaaat gcggcacatt cggcacaccg
     4561 gaaaggaaat atgatgaaag tcctctttat cgccgacccg atggcaagtt tcaaaaccta
     4621 caaagacacc acctacgcca tgatgcgcga gatggcaaaa cgcggctggc ggctgtttca
     4681 taccttgagc agcggattgt cggttaaaaa cggtctggtg gttgctgatg cgtctgcttt
     4741 tgagtttctc ggcgcacaag acgaccacga caaaaactgg tttgccgccg ccgacaaagt
     4801 tcagacggca ttgaaagcat ttgatgccgt gattatgcgt accgatccgc cgttcgatat
     4861 gcaatacctc tacgccacac agcttctgac gctggcggag cagcagggcg cgaaggtctt
     4921 taacagcgga cagtcgatgc gtgacttcaa tgaaaaactg gcgattttga acttcagccg
     4981 ctttaccgcg cccacgctgg taacgacccg ttccgccgat gtccgcgcat ttttgaaaga
     5041 acacggcgac atcatcatta aaccgctcga cggcatgggc ggtatgggca tcttccgcct
     5101 gaccgaaaaa gaccccaaca tcggcagcat cctcgaaacc ctgatgcagc ttgattcccg
     5161 caccattatg gcgcaacgct acattcccga aatcgtacac ggtgacaaac gcatcctgat
     5221 tatcggcggc gaagtcgtcc cctatgcttt ggcgcgtatt cctcaaaacg gcgaaacacg
     5281 cggcaacctt gcggcaggcg ggcgcggcgt ggcgcaggaa ttgagcgaac gcgaccgcga
     5341 aattgccgaa acgctcgccc ccgaactcaa acggcgcggc atcctgctgg ccggtttgga
     5401 cgttatcggc agcaacctga ccgaagtcaa cgtaaccagc ccgaccggat tccaagaaat
     5461 tatgaaacaa aaaggcttcg atgtggcggc aatgtttgcc gatgccgttg ccgcgtggtc
     5521 ggtacgttaa accgatgccg tctgaaaggc ttttgcttca caaccgcctg gtttgatcgg
     5581 gcaggcaggg ttttccctca gtcggcagag atacgcttaa taccgtacgg acaccccgcc
     5641 gccccgtttt cagacggc
//
LOCUS       DAXHPV010000127         5625 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.127, whole genome shotgun sequence.
ACCESSION   DAXHPV010000127 DAXHPV010000000
VERSION     DAXHPV010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5625
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.127"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            114..635
                     /locus_tag="ACFM6C_001628"
     CDS             114..635
                     /locus_tag="ACFM6C_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NosR"
                     /protein_id="HFC6159062.1"
                     /translation="MSCFSIKRMSAFRARITAFFAAFVFLTAALPAYAERLPDFLAKI
                     QPSEIFPGADRYGKPEGKPMVARVYKGDEQLGLVYITTDAVNTRGYSSKPIDTLMALA
                     NDGTIAGAKLVDHHEPIMLIGIPHLPAPGRAIRLNWLPAYIKPNFISTNRLRLKGLPT
                     VLQPSKGTGAGVP"
     gene            524..1723
                     /locus_tag="ACFM6C_001629"
     CDS             524..1723
                     /locus_tag="ACFM6C_001629"
                     /inference="COORDINATES: protein motif:HMM:TIGR04247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide reductase family maturation
                     protein NosD"
                     /protein_id="HFC6159063.1"
                     /translation="MASGVYQTKLYIDKPITIEGPADRSATIEGDRSGRTIAVHAPDV
                     TLRNLTVTRSGMSLPAMDAGIYLEETAPRALIEHNNILDNSVGVYLHGSAEAMVRENK
                     IVGDATLRVNERGNGVTVWNAPGAQVVGNDISKGRDGIFSNTSTHNTYKNNRFSDLRF
                     AVHYMYTNDSEVSGNISVGNNMGYVLMFSERLKVFDNIAVGSRDQGIMLNYVNYSDIH
                     DNIINKAGKCVFAYNANYDKLSANHFENCQIGIHFTAAIEGTSLHDNSFINNESQVKY
                     VSTRFLDWSEGGHGNYWSDNSAFDLNGDGFGDSAYRPNGIIDQVIWRAPVARLLMNSP
                     AISIVKWAQAQFPAVLPGGVVDSKPLMKPYAPKIQTRYQAMKDELLKEAETRQSEWGR
                     AGNGSLN"
     gene            1781..2395
                     /locus_tag="ACFM6C_001630"
                     /pseudo
     CDS             1781..2395
                     /locus_tag="ACFM6C_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709597.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
     gene            2412..2543
                     /locus_tag="ACFM6C_001631"
                     /pseudo
     CDS             2412..2543
                     /locus_tag="ACFM6C_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688339.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            2540..3034
                     /locus_tag="ACFM6C_001632"
     CDS             2540..3034
                     /locus_tag="ACFM6C_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide reductase accessory protein NosL"
                     /protein_id="HFC6159064.1"
                     /translation="MKKTLLAIVAVSALSACRQAEEGPPPLPRQISDRSVGHYCSMNL
                     TEHNGPKAQIFLNGKPDQPVWFSTIKQMFGYTKLPEEPKGIRVIYVTDMGNVTDWTNP
                     NADTEWMDAKKAFYVIDSGFIGGMGAEDALPFGNKEQAEKFAKDKGGKVVGFDDMPDT
                     YIFK"
     gene            complement(3122..4783)
                     /locus_tag="ACFM6C_001633"
     CDS             complement(3122..4783)
                     /locus_tag="ACFM6C_001633"
                     /EC_number="1.5.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004174 -
                     electron-transferring-flavoprotein dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein-ubiquinone
                     oxidoreductase"
                     /protein_id="HFC6159065.1"
                     /translation="MTESITRDSMQYDVVIVGAGPSGLSAAIKLKQLAEQNGREISVC
                     VVEKGSEAGAHSLAGAVIDPIALNELIPDWKEKGAPLTRTVTQDKVLFLTEKKAFNLP
                     ITPNFDNHGNYIVSLGEVVRWLAEQAENLGVEIYPGFAAAEVLYHKDGSVKGIATGNM
                     GVGKNGEPTDSFQPGMELWARQTLFAEGCRGSLSKQIIERFKLDQNSQPQTYGLGIKE
                     VWEVPSEQHQPGLVMHSAGWPLDSKTYGGAFVYHFDDNKVAVGFVVGLDYQNPYLSPF
                     EEFQRFKTHPEIRKTFEGGRRIAYGARSLIEGGFQSLPKLSFKGGVLVGDAAGFLNMP
                     RIKGIHTAMKSAMLAAEAVFPLLENLEEVEGFDSGKEAADYQQRFEQSWLYQELYAAR
                     NVRPSFKWGVYLGSIYTGIDQMIFRGKAPWTLKHHGKDNEQLKKAAACKPIDYPKPDG
                     VLTFDRLSSVFLANLAHEENQPDHLVLNNPQTMIDVNYKEYASPETRYCPADVYEIVE
                     ENGNPRLQINAANCVHCKTCDIKDPTQNITWICPEGASGPNYGGM"
     gene            complement(4913..5462)
                     /locus_tag="ACFM6C_001634"
                     /pseudo
     CDS             complement(4913..5462)
                     /locus_tag="ACFM6C_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689233.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
     gene            complement(5407..5580)
                     /locus_tag="ACFM6C_001635"
                     /pseudo
     CDS             complement(5407..5580)
                     /locus_tag="ACFM6C_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
BASE COUNT         1321 a         1533 c         1439 g         1332 t
ORIGIN      
        1 tcccgtatgc ggattggttt taagatttgt aaatttgatt tgcatcaaaa aatcgccgat
       61 agatgattca tataatatca atattaaaga gtatcggtat atcggggata gtcatgtcct
      121 gtttttcaat caaacgtatg tccgcgtttc gggcgcggat aacagcgttt tttgccgcct
      181 ttgtcttttt gacggcggca ctgcccgctt atgcggagcg tctgcctgat tttctggcga
      241 aaatacagcc ttcggaaatt tttccgggtg cggaccgtta cggcaagccg gaaggtaagc
      301 ctatggttgc ccgcgtttac aaaggcgatg agcagttggg cttggtctat atcacgaccg
      361 atgcggtcaa tacgcgcggt tattcgagca aaccgatcga tacgctgatg gctttggcaa
      421 atgacggcac gatagccgga gcgaaactgg tcgatcatca cgaaccgatt atgctgatcg
      481 gtatcccgca tttgcccgcg cccgggcggg cgatacgctt aaactggctt ccggcgtata
      541 tcaaaccaaa ctttatatcg acaaaccgat tacgattgaa gggcctgccg accgttctgc
      601 aaccatcgaa ggggacagga gcgggcgtac catagccgta cacgcgccgg acgtaacgct
      661 ccgcaacctg accgttaccc gttccggtat gagcctgcca gcaatggatg ctggtattta
      721 tctcgaagaa accgccccgc gcgccctgat tgaacacaac aatattttgg ataattcggt
      781 cggcgtctat ctgcatggtt ctgccgaagc gatggtacgc gagaataaaa tcgtcggcga
      841 tgcgactttg cgcgtgaacg agcgcggcaa cggcgttacc gtttggaacg cgcccggcgc
      901 gcaggtcgtc ggcaacgaca tttccaaagg gcgggacggc attttttcca acaccagcac
      961 gcacaacacc tataaaaaca accgcttcag cgatttgcgt ttcgccgtcc actatatgta
     1021 caccaacgac agcgaagtca gcggcaatat ttccgtgggc aacaatatgg gctatgtgct
     1081 gatgttttcc gagcggctca aagtgtttga caatatcgcc gtcggcagcc gcgatcaggg
     1141 cattatgctc aactatgtca actattccga tattcacgac aacattatca acaaggcggg
     1201 caagtgcgtt tttgcctaca atgccaacta cgataaactg tccgccaatc attttgaaaa
     1261 ctgccaaatc ggcatacact ttaccgccgc catcgaaggc acgtccctgc atgacaattc
     1321 ctttatcaac aacgaaagcc aggtcaaata cgtcagcacg cgctttctcg actggagcga
     1381 gggcggacac ggcaactatt ggagcgacaa cagcgcgttc gatttgaacg gcgacggctt
     1441 cggagacagc gcgtaccgtc ccaacggcat tatcgaccaa gtcatctggc gcgcaccggt
     1501 tgcacgcctt ctgatgaaca gtcccgcaat cagcatcgtc aaatgggcgc aggcgcagtt
     1561 tcccgccgtt ttgcccggag gcgtggtgga cagcaaaccg ctgatgaagc cttatgcccc
     1621 caaaattcaa acccgttatc aggcgatgaa ggacgagctg ctcaaagaag ccgaaacgcg
     1681 gcagtcggaa tggggcaggg cgggaaacgg ttctttgaac tagtctgctt cagacggcat
     1741 ccggattcaa atgccgtctg aaaacacaaa aggaacaacc atgaccacac atcatgtcga
     1801 attgaggaag gtaaccaaac gcttcggcgc gcaaaaagcc gtcaaccaag tcgatttggt
     1861 tttgaaggca ggagaaagcg tcgggcttgc cggacacaac ggtgcgggca agtccaccat
     1921 tatgaagctg atactcgggc tgattacccc gaccgaaggc gaagtgatgc ttttgggcga
     1981 acgtaccggc agcaaagcgg gggcgcggct tcgcagccaa atcggctacc tgcccgaaac
     2041 tgttgcgttg cacccttcgc tgaccggcat cgaaacgctg gatttttatg ccaaacttaa
     2101 aaaacagccg ctcacgcaga atcgggggct gctcgagcgc gtcggcattt cacaggcggc
     2161 acaccgccgc gtcggcactt attctaaagg gatgcgccaa cgccttgcct tggcacaagc
     2221 cctgctgggc gagcccaaag tcctgctgtt tgacgaaccg acaaccggcc tcgaccctgc
     2281 atcaaggcaa atgttttacg aagtcgtgcg cgaactcaac gggcgcggcg cgaccgtatt
     2341 gctcagtacc cacgcccttg ccgagttgga cgggcacgcc gaccgcatta tcgtggatta
     2401 aatttaatcc actatatgcg ggtatggcgg gtttgagcgg acaaatcagc ctgaccgtcc
     2461 ccgttttgct gaccgctcag gttttatggg ttatcattcc gcttgttttg gcagccggaa
     2521 tttttagaaa gcgacaaata tgaaaaaaac cctgttggca attgttgccg tttccgcctt
     2581 aagtgcctgc cggcaggcgg aagagggacc gccgccttta ccccggcaga ttagcgaccg
     2641 ttcggtcgga cactattgca gtatgaacct gaccgaacac aacggcccca aagcccagat
     2701 tttcttgaac ggcaaacccg atcagcccgt ttggttctcc accatcaagc agatgttcgg
     2761 ctataccaag ctgcccgaag agcctaaagg catccgcgtg atttacgtta ccgatatggg
     2821 caatgttacc gattggacga atcccaatgc cgacacggag tggatggatg cgaaaaaagc
     2881 cttttacgtc atcgacagcg gctttatcgg cggtatgggt gcggaagacg cgctgccgtt
     2941 cggcaacaaa gagcaggctg agaaatttgc aaaggataaa ggcggtaagg ttgtcggttt
     3001 cgacgatatg cctgatacct atattttcaa ataatattga aaaaaccggc cgaaacttta
     3061 aaaacgagtt tcggtcggtt tttcttttct tgttcggtat agtgtcggca ggaaagaacc
     3121 ttcacatccc gccgtaattc ggcccgctcg cgccttcggg gcaaatccaa gtgatgtttt
     3181 gcgtcgggtc tttgatatcg caggttttgc agtgcacgca gtttgccgcg ttgatttgca
     3241 ggcgcggatt gccgttttct tcaacaattt cgtacacgtc ggccggacaa tagcgcgttt
     3301 cgggcgaggc gtattctttg tagttcacgt ctatcatcgt ttgcggattg ttcagcacca
     3361 aatggtcggg ctggttttct tcgtgcgcga gattggcaag gaagacgctg ctcaagcggt
     3421 cgaaggtcaa cacgccgtcg ggtttcggat aatcaatcgg cttgcacgcg gcggcttttt
     3481 tgagctgctc gttgtctttg ccgtgatgtt tcaaggtcca cggggctttg cctctgaaaa
     3541 tcatctgatc gatgccggtg tagattgagc cgaggtaaac gccccatttg aatgacggac
     3601 ggacattgcg cgcggcgtaa agctcttgat acagccagct ttgttcaaaa cgttgctgat
     3661 aatccgccgc ctctttgccg ctgtcgaaac cctccacttc ttcaaggttt tccaacaagg
     3721 ggaacacggc ttcggcggcg agcatggcgg atttcatcgc ggtatgaatg cctttgatgc
     3781 gcggcatatt gaggaaaccc gccgcatcgc cgaccaaaac gccgcctttg aacgagagct
     3841 tcggcaaact ttgaaaaccg ccttcaatca gcgaacgcgc accgtaagca atgcggcggc
     3901 cgccttcaaa ggttttgcgg atttcgggat gggttttgaa acgttggaac tcttcaaacg
     3961 gcgacagata aggattttga tagtccaaac cgaccacgaa gccgacggca actttgttgt
     4021 cgtcgaaatg gtaaacaaac gcgccgccgt aggttttgct gtccagcggc cagcctgcgc
     4081 tgtgcatcac caaaccgggc tgatgctgtt cggacggcac ttcccaaact tctttaatgc
     4141 ccaagccgta agtttgcggc tggctgtttt ggtcgagttt gaagcgttcg atgatttgtt
     4201 tggaaagcga acctcggcag ccctcggcaa acagggtttg ccgtgcccaa agctccatgc
     4261 cgggctggaa tgaatcggtc ggctcgccgt ttttgcccac gcccatattg ccggttgcaa
     4321 tgcctttgac cgaaccgtct ttgtgataca gcacttcggc agcggcaaag cccggataaa
     4381 tttccacgcc caaattttcc gcctgctccg ccaaccagcg cacgacttcg cccaagctga
     4441 cgatgtagtt gccgtgattg tcgaaattgg gggtaatggg cagattgaac gcttttttct
     4501 ccgtcaggaa caacaccttg tcctgcgtta ccgtgcgcgt cagcggcgcg cctttttctt
     4561 tccagtcggg aatcaactca ttcagcgcaa tcgggtcaat gaccgcgccc gccagcgaat
     4621 gcgcgcccgc ctccgaacct ttctccacca cgcaaacgct gatttcgcgc ccgttctgtt
     4681 cggcaagctg cttgagtttg atggcggcgg acaaacccga tgggcctgcg ccgacaatca
     4741 cgacatcgta ttgcatactg tcgcgggtga tggattctgt catggcggtt cctgtgtatt
     4801 tattattgaa ttgcaaatcc gtaattatac aacgggaaca tatagttacc aaatacaaca
     4861 aaggtcgtct gaaaaccata ttttcggttt tcagacgacc tttgtcgaaa tttcaataag
     4921 cacgccacca ttttacctgt ccgaccgcaa actccgtctg acgtttcgga ctgcgtgtga
     4981 aaaacgcctt atccccgccg gcatccctcc ctttcggcac aaccgccaaa atcttacctg
     5041 ccaaatttcc ctcacgggtt tgccaagcat ccaaaaactg cgccctgctc atcgaaacat
     5101 gacccagcga cgggtcggca agcaaaaccg tattgccgtc tataccgcgc aataccgaga
     5161 aatgatcatc cttgcggtat ttcagataca cgatgacggg gatttgcaac tgtgcaagct
     5221 gctcgaaaga cagggcatag cctttcgcct caaaacccaa atcaggcatg atgcgccgca
     5281 tatcctcaaa cgacgcgcgc atctgctcct tatccagctt tttcaacacg tcctcttccg
     5341 tcagcttttg cccgtgaaaa ttgttcaaaa gccgtcgcca ccgaagccgc cccgcaggaa
     5401 aaatccaaat cctgctttac aatattgaaa tcgcgccttt ctttccaact ctgcactttg
     5461 atttttccat aagcaacagg attatagtgg attaaattta aaccagtacg gcgttgcctc
     5521 gccttgccgt actatctgta ctgtctgcgg tttcgtcgcc ttgtcctgat ttttgttaat
     5581 ccactatagg tttccgtgcg gacgtgttca gattcccgcc ttcgc
//
LOCUS       DAXHPV010000128         5612 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.128, whole genome shotgun sequence.
ACCESSION   DAXHPV010000128 DAXHPV010000000
VERSION     DAXHPV010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5612)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5612)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5612
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.128"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            158..964
                     /locus_tag="ACFM6C_001636"
     CDS             158..964
                     /locus_tag="ACFM6C_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4198 domain-containing protein"
                     /protein_id="HFC6159066.1"
                     /translation="MKKTLTLLAVSALFATSAHAHRVWVETAHTHGGEYLKADLGYGE
                     FPELEPIAKDRLHIFSKPMQLVTEKGKENMIQRGTYNYQYRSNRPVKDGSYLVIAEYQ
                     PTFWSKNKAGWKQAGIKEMPDASYCEQTRMFGKNIVNVGHESADTAIITKPVGQNLEI
                     VPLDNPANIHVGERFKVRVLFRGEPLPNATVTATFDGFDTSDRSKTHKTEAQAFSDST
                     DDKGEVDIIPLRQGFWKANVEHKADFPDQSVCQKQANYSTLTFQIGHSHH"
     gene            complement(1022..2287)
                     /locus_tag="ACFM6C_001637"
     CDS             complement(1022..2287)
                     /locus_tag="ACFM6C_001637"
                     /EC_number="1.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HFC6159067.1"
                     /translation="MSEALAKETLNPFEIARKQVKTACDRLKTDPAVYEILKSPTRVL
                     EVNFPVKLDDGTVKTFTGYRSQHNNAVGPYKGGVRFHPGVNLDEVKALSIWMTIKCCV
                     AGIPYGGGKGGITLDPRDYSEAELERIARAYSEAISPLIGEKIDIPAPDVNTNGKIMS
                     WMVDAYENVVKHSAPGVFTGKPVEFGGSLARTEATGYGVNLAAVQALEKLGKDVKGAT
                     YAIQGFGNVGYHTGYYAHQSGAKIVAVSTVDVAIYNENGLDMEALFKEFQEKGFITNE
                     AGYGKEISNAELLALEVDVLAPCALENQLTSENAGKVRATIVVEGANGPTTPEADVIL
                     RQNGVLVVPDILANCGGVVVSYFEWVQNLQGYYWEFDEVQEKETVVLRRAFRDIWNLA
                     QEYDVDLRTASYMMSIRRVEKAMKLRGWY"
     gene            2694..3404
                     /locus_tag="ACFM6C_001638"
     CDS             2694..3404
                     /locus_tag="ACFM6C_001638"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008967 - phosphoglycolate phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HFC6159068.1"
                     /translation="MNAAIEHVQAVAFDLDGTLCDSVPDLAAAAEAMLEQLGMKPLPA
                     KVVESYVGDGIGKLVHRVLTNDRDREADSELWEKGFVSYMKYYRDHLSVFTRPYPETE
                     AGLALLKSLGIPLAVITNKNEILAVELLKQLGLADYFSLILGGDSLPEKKPSPLPLRH
                     AAEVLGIDVANMVMVGDSRNDIIAAKAAGCLSVGVTFGYGDMTLLSQDDATRPDWIIG
                     SLPEIYENLQPQKNKDEE"
     gene            3477..3938
                     /gene="recX"
                     /locus_tag="ACFM6C_001639"
     CDS             3477..3938
                     /gene="recX"
                     /locus_tag="ACFM6C_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HFC6159069.1"
                     /translation="MKPQKSLRARAMDILSRQEVSRIGLKRKLAPYAESEEELENVLN
                     EFAERNWQSDLRYAEAYIRSKSRKHGSLRLKQALAQQGIDEETSRNLLPDRSSEKQAA
                     IAVLRKKFKHPAADLKEKQKQARFLAYRGFDADTVQTALKHAWDENWEDGC"
     gene            4012..4173
                     /locus_tag="ACFM6C_001640"
     CDS             4012..4173
                     /locus_tag="ACFM6C_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159070.1"
                     /translation="MSGQPEKNHNPLLEDERKNPVYRMGQAVAGFMLVVWAGVLALVF
                     FLVFRFWLS"
     gene            4326..4808
                     /locus_tag="ACFM6C_001641"
     CDS             4326..4808
                     /locus_tag="ACFM6C_001641"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - fatty acyl-CoA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HFC6159071.1"
                     /translation="MTQQRQLPSHELIMSELMMPDTANFSGNVHGGELLLLLDQVAYS
                     CASRYSGNYCVTLSVDKVLFKEPIHIGDLVTFYAAVNYTGRTSMEIGIRVEAQNIRTG
                     EIRHTNSCYFTMVAVKDGKPVPVPPLEILTDRQRCRYEKAKKRRDISLQASEDMSCGC
                     "
     gene            complement(5015..>5612)
                     /locus_tag="ACFM6C_001642"
     CDS             complement(5015..>5612)
                     /locus_tag="ACFM6C_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010791153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="murein hydrolase activator EnvC"
                     /protein_id="HFC6159072.1"
                     /translation="LSIGQIVKVKPAGYAAPKTSAVESRPAVPAAVQTPVKPAAQPPV
                     QSAPQPAAPAAENKAVPAPAPQSPAASPSGTRSVGGIVWQRPTQGKVVADFGGNNKGV
                     DIAGNAGQPVLAAADGKVVYAGSGLRGYGNLVIIQHNSSFLTAYGHNQKLLVGEGQQV
                     KRGQQVALMGNTDASRTQLHFEVRQNGKPVNPNSYIAF"
BASE COUNT         1448 a         1643 c         1305 g         1216 t
ORIGIN      
        1 tcgttctctt tgagctaagg cgaggcaacg ccgtactggt ttttgttaat ccactataca
       61 aaaagacagt tttcagacag caaatccgtc ttcacacgat acctattttg ttataacata
      121 acaaaatctt taacccacac gagacaaagg ctgcaccatg aagaaaacat tgacactgct
      181 cgccgtttcc gccctatttg ccacatccgc ccacgcccac cgcgtctggg tcgaaaccgc
      241 ccacacgcac ggcggcgaat accttaaagc cgacttgggc tacggcgaat ttcccgaact
      301 cgaacccatc gccaaagacc gcctgcacat cttcagcaaa ccgatgcagc tggttaccga
      361 aaaaggcaag gaaaacatga ttcaacgcgg cacatacaac taccagtacc gaagcaaccg
      421 tcccgttaag gacggcagtt acctcgtcat cgccgaatat cagcctactt tctggtcaaa
      481 aaacaaagca ggctggaaac aggcgggcat caaagaaatg cctgacgcaa gctattgcga
      541 acaaacccga atgttcggca aaaacatcgt caacgtcgga cacgaaagcg cggacaccgc
      601 catcatcacc aaaccggtcg gacaaaactt ggaaatcgtc ccgctggaca atcccgccaa
      661 cattcacgta ggcgaacgct tcaaagtccg cgttctgttc cgtggcgaac cgctgcccaa
      721 tgccaccgtt accgccacct ttgacggctt cgacaccagc gaccgcagca aaacgcacaa
      781 aaccgaagca caggctttct ccgacagcac agacgacaaa ggcgaagtgg acatcatccc
      841 cttgcgccaa ggcttctgga aagccaatgt cgaacacaaa gccgacttcc ccgatcaaag
      901 cgtgtgccaa aaacaggcga actactcgac tttaaccttc caaatcggcc attcgcacca
      961 ttaatcccgc ccgcacaaaa atgccgtctg aaggcttcag acggcatttt ttgttcaaac
     1021 atcaatacca accgcgcagt ttcatcgctt tttcaacacg gcggatactc atcatgtaag
     1081 acgcggttcg caaatcgaca tcatactctt gcgccaagtt ccatatatcg cggaacgcac
     1141 ggcgcaggac aacggtttct ttctcttgaa cttcgtcaaa ctcccagtag tagccttgca
     1201 ggttttgtac ccattcaaaa taggatacca ccacgccgcc gcagtttgcc aaaatatcag
     1261 gaacgaccaa tacgccgttt tgacgcagga taacgtctgc ctctggagta gtcgggccat
     1321 ttgcgccttc gaccacgatt gtcgcgcgga ctttaccggc attttcagaa gtcagttggt
     1381 tttccagtgc gcaaggggca agtacgtcca cttccagagc caaaagttcg gcattgctga
     1441 tttctttacc gtagccggct tcattggtga tgaagccttt ttcttggaac tctttaaaca
     1501 aagcttccat atccaaaccg ttttcgttgt agatggcaac gtcaacagta gaaacggcaa
     1561 cgattttcgc accggattga tgcgcgtaat aacctgtgtg gtagccgaca ttaccgaaac
     1621 cttgaatggc gtaagtggca cccttcacgt ccttgcccag tttttccaaa gcttggacgg
     1681 cggcgaggtt cacgccgtaa ccggtagcct cggtacgcgc caaagagccg ccgaactcaa
     1741 ccggttttcc ggtaaatacg cccggcgcgg aatgtttcac cacgttttca taagcatcca
     1801 ccatccacga cataattttg ccgttggtat tcacatcggg ggcgggaata tcgattttct
     1861 cgccaatcag cggagaaatg gcttcggaat aagcgcgagc gatgcgttcc agttccgcct
     1921 cggaataatc gcgcggatcc aaggtaatac cgcctttgcc gccgccgtaa ggaatgccgg
     1981 ccacgcagca tttgatggtc atccaaatcg acagggcttt gacttcgtcc agattcacac
     2041 cgggatggaa gcgcacgccg cctttatagg ggccgacggc gttgttgtgt tgcgaacggt
     2101 agcccgtgaa ggttttgacc gtgccgtcgt cgagtttgac ggggaaattg acttccaaca
     2161 cgcgggtcgg actcttcagg atttcataaa cggccggatc ggttttcagc cggtcgcagg
     2221 cggttttgac ctgtttgcgc gcgatttcaa acggattgag ggtttctttt gcaagggctt
     2281 cagacatttt gcttcctttt cacaaaaaga ttttcagggg cgtgcatttc gctcattact
     2341 ataaccaatt tcccgacaaa atgtaatagc gtgtagtcga cataagcccg atttgattaa
     2401 tctatatatg attttatttt tcaagccgca cggaatcagc ccggactccg cctgaaaaag
     2461 cagcgcgcgc gtccgaaaaa taaatgtcaa attaaataaa gatataggca tccttttatt
     2521 ttttaaaaat ttaattggaa catcgccggg atttcaaacc cttgcccgat tccgccccga
     2581 aatccgaaaa caccgcctgc aaaacctgtt gcgattgtta acaatctata cattagaagc
     2641 cctgtgcaaa cgatgttaaa ataaaccctt tcaacccgac aggaaatcag attatgaatg
     2701 cagccatcga acacgtccaa gccgtcgcct tcgatttgga cggcacactg tgcgattccg
     2761 tccccgacct tgccgccgcc gcagaagcga tgttggagca actcggtatg aaaccgctgc
     2821 ccgccaaagt ggtcgaaagc tatgtgggcg acggcatcgg caaactggtt caccgcgtcc
     2881 tcaccaacga ccgcgaccgc gaagccgatt ccgaactgtg ggaaaaaggt ttcgtgtcct
     2941 atatgaaata ctaccgcgac catttgagcg tcttcacccg cccctatccc gaaaccgaag
     3001 ccgggctggc attgctcaaa tctttgggca tcccgctggc agtcattacc aacaaaaacg
     3061 aaatccttgc cgtcgaactg ttgaaacagc tcggacttgc cgactacttc agcctgatac
     3121 tcggcggcga cagcctgccc gagaaaaaac ccagccccct gccgctgcgg catgccgccg
     3181 aagttttggg tatcgatgtt gcaaacatgg ttatggtcgg cgactcgcgc aacgacatca
     3241 tcgccgccaa agccgccggc tgcctgagcg tcggcgttac cttcggttac ggcgatatga
     3301 cgctgctctc gcaagacgat gcgacccgcc ccgactggat tatcggctcg ctgcccgaaa
     3361 tttacgaaaa cctgcaaccg cagaaaaata aagacgaaga ataaaacaat ctgttcagac
     3421 ggcatcggaa tccgtttccc atgccgtctg aatctttccg tgccgaaacc gccgccatga
     3481 aaccgcaaaa atccctacgc gcccgcgcga tggacatcct ctcgcgccaa gaagtcagcc
     3541 gcatcggtct gaaacgcaaa cttgcaccgt acgccgaaag cgaagaggag ttggaaaacg
     3601 tgttaaacga atttgccgaa cgcaactggc agtcggattt gcgctatgcc gaagcctata
     3661 tccgcagcaa aagccgcaaa cacggttcat tgaggctgaa acaggctttg gcgcaacagg
     3721 gcatagatga agaaaccagc cgcaacctgc ttcccgaccg ctcaagcgaa aaacaggccg
     3781 ccatagccgt gttgcgtaaa aaattcaaac accccgccgc cgacctcaaa gaaaaacaaa
     3841 aacaggcgcg tttcctcgcc tatcgcggat tcgatgccga taccgttcag acggcattga
     3901 aacacgcttg ggacgaaaat tgggaagacg gctgctgacc ttccttcttg aatctttttg
     3961 cacggcaaca taaccttacg cccgtttcca acttttccga ttgagaacaa aatgtccgga
     4021 caacccgaaa aaaatcataa ccccctcctt gaggacgaac gcaagaaccc cgtgtaccgc
     4081 atggggcagg cagttgccgg attcatgctc gtcgtttggg caggcgtatt ggcactcgtg
     4141 tttttcctgg tcttccgttt ttggctttcc taaacaaaat gccgtctgaa ggcttcagac
     4201 ggcatcggcg gcccatttct gcagactatc ccgccatagc tttttttagc ttgaattcca
     4261 cttccccatt ccctaaaatt ttcccacacc catttcaaaa caccctttct taaaacaggt
     4321 acactatgac acaacaacgc caactgcctt cccacgaact cattatgtcc gaactgatga
     4381 tgccggacac cgccaatttc agcggcaacg tacacggcgg cgaactcctg ctcctgctcg
     4441 accaagtcgc ctattcctgc gccagccgtt acagcggcaa ttattgcgtt accctgtcgg
     4501 ttgacaaagt cctgtttaaa gaacccatcc acatcggcga tttggttacc ttttacgccg
     4561 ctgtcaacta cacgggacgc acctcgatgg aaatcggcat ccgtgtcgaa gcacaaaaca
     4621 tccgcaccgg cgaaatccgc cataccaaca gctgctactt cacgatggtt gcggtcaaag
     4681 acggcaaacc cgtccctgtc cctccgctgg aaatcctgac cgaccgccaa cgctgccgct
     4741 acgaaaaagc caaaaaacgc agagacatca gcctgcaagc ctctgaagac atgtcctgcg
     4801 gctgctgacg gcggactatg ccgtctgaaa gacaggcaca tcgcgccatc cgtttctact
     4861 gcaaacggat gaaatcaagc aaatacccaa acacagtcaa acaaatttat atgccccgtc
     4921 ccttccgaat gatttgaaaa cacagccgcc aaaaacaaaa atgccgtctg aaaacctttc
     4981 agacggcatt tccaacttga tttcaggcag aaagtcagaa cgcgatatag ctgttcggat
     5041 taaccggttt gccgttttgc cgcacctcga aatgaagctg cgttctggaa gcgtcggtat
     5101 tgcccatcaa agcgacctgc tgcccgcgtt tgacctgctg gccttcgccg accagcaatt
     5161 tttggttgtg cccgtatgcg gtcaggaagg aagaattatg ctggatgatg accagattgc
     5221 cgtatcccct caaaccggaa cctgcataaa ccactttgcc gtcagccgcc gccaaaacgg
     5281 gctgtcccgc attaccggca atatcgacac ccttgttgtt gccgccgaaa tcggcaacca
     5341 ctttaccttg cgtcggacgc tgccaaacaa tgccgccgac cgaacgcgtg ccggaaggcg
     5401 aagcggcagg agattgcggg gcgggcgcgg gaaccgcttt attttccgca gcgggcgcgg
     5461 caggttgcgg cgcggactgc acaggcggtt gcgcggcggg tttcacaggg gtttgcacgg
     5521 cagccggtac ggcgggcctg ctttctacgg ctgaggtttt cggtgcggca tatcctgccg
     5581 gtttgacttt aacaatctga ccgatgctca ac
//
LOCUS       DAXHPV010000129         5572 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.129, whole genome shotgun sequence.
ACCESSION   DAXHPV010000129 DAXHPV010000000
VERSION     DAXHPV010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5572)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5572)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5572
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.129"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(45..1007)
                     /gene="mafA"
                     /locus_tag="ACFM6C_001643"
     CDS             complement(45..1007)
                     /gene="mafA"
                     /locus_tag="ACFM6C_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin MafA"
                     /protein_id="HFC6159073.1"
                     /translation="MQARLLIPILFSVFILSACGTLTGIPSHGGGKRFAVEQELVAAS
                     ARAAVKDMDLQALHGRKVALYIATMGDQGSGSLTGGRYSIDALIRGEYINSPAVRTDY
                     TYPRYETTAETTSGGLTGLTTSLSTLNAPALSRTQSDGSGSRSSLGLNIGGMGDYRNE
                     TLTTNPRDTAFLSHLVQTVFFLRGIDVVSPANADTDVFINIDVFGTIRNRTEMHLYNA
                     ETLKAQTKLEYFAVDRTNKKLLIKPKTNAFEAVYKENYALWMGPYKVSKGIKPTEGLM
                     VDFSDIRPYGNHTGNSAPSVEADNNHEGYGYSDEVVRQHRQGQP"
     gene            complement(1191..1910)
                     /gene="pyrH"
                     /locus_tag="ACFM6C_001644"
     CDS             complement(1191..1910)
                     /gene="pyrH"
                     /locus_tag="ACFM6C_001644"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HFC6159074.1"
                     /translation="MTQQIKYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVK
                     MGVQVGIVVGGGNIFRGVSAQAGSMDRATADYMGMMATVMNALALKDAFETLGIKARV
                     QSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVML
                     KATNVDGVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGI
                     AKEGSLKRVITGEDEGTLVHC"
     gene            complement(2127..2981)
                     /gene="tsf"
                     /locus_tag="ACFM6C_001645"
     CDS             complement(2127..2981)
                     /gene="tsf"
                     /locus_tag="ACFM6C_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003795802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HFC6159075.1"
                     /translation="MAEITAKMVADLRAATGLGMMECKKALVEAEGNFDKAEEILRIK
                     SGAKAGKLAGRTAAEGVLAYAINGNVGALVEVNCETDFVAKDAGFVEFANFVAKTAAE
                     KKPASVEELSELVEAERKAIIAKLGENMSVRRFQVIDTANQLVAYIHGALATEGVLVE
                     YKGSEDVARKIGMHIVAAKPQCVSEAEVDAETVEKERHIYTEQAIASGKPADIAAKMV
                     EGRIRKFLAEITLNGQAFVMNPDQTVAQFAKENGTEVISFVRYKVGDGIEKAVVDYAA
                     EVAAAAKV"
     gene            complement(3111..3839)
                     /gene="rpsB"
                     /locus_tag="ACFM6C_001646"
     CDS             complement(3111..3839)
                     /gene="rpsB"
                     /locus_tag="ACFM6C_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HFC6159076.1"
                     /translation="MSQITMRQMIEAGVHFGHQTRFWNPKMAQYIFGARNKIHIVNLE
                     KTLPMFQDAQEAVRRLVANKGTVLFVGTKRQARDIIREEATRAGMPFVDYRWLGGMLT
                     NYKTVKQSIKRLEEKTAALENAAESGFSKKEILEMQRDVEKLERSLGGIKNMKGLPDA
                     IFVIDTGYQKGTLVEAEKLGIPVIAVVDTNNSPDGVKYVIPGNDDSAKAIRLYCRGIA
                     DAVLEGKNQALQETVAAAQEAAAE"
     gene            complement(4016..4249)
                     /locus_tag="ACFM6C_001647"
     CDS             complement(4016..4249)
                     /locus_tag="ACFM6C_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012779540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159077.1"
                     /translation="MWHIVAIGYLFVAVMFSAAQPSIARALIYLVFWAVLPTVFTVFV
                     VTVRRRNRLMKQQEQAEFEQQRAQRQKDSGTKP"
     gene            4327..4908
                     /locus_tag="ACFM6C_001648"
     CDS             4327..4908
                     /locus_tag="ACFM6C_001648"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HFC6159078.1"
                     /translation="MRNEEKRALRRELRGRRSQMGRDVWAAATVKINHLLKRYIKKGR
                     KIGVYWPMGKELRLDGFVRVAQKRGAKLYLPYIEPRSQRMWFTPYPESGMERERIRGR
                     AKLNVPQFAGRKIRVHGLSVLLVPLVGIDREGYRLGQAGGYYDATLAAMKYRLQAKTV
                     GVGFACQLVGTLPREAHDLPLDGFVSEAGILCF"
     gene            4969..5559
                     /locus_tag="ACFM6C_001649"
     CDS             4969..5559
                     /locus_tag="ACFM6C_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HFC6159079.1"
                     /translation="MSEKIILPVLSLGGVRLEPLDVHHETGLREAVCDGEVWKLGVTS
                     APHPDRVADYIGTALATRLAFAVVDEEAGRVVGTTAYYHFEPQIPRLDIGFTWYAASA
                     RRTRINTCCKIMLLDYAFDVLACRCVGWRTDILNLASQRAIERLGAEKDGVLRMYMLR
                     KDGSVRDTVVYSMLREDWCKNREILTGRLAGYGVQV"
BASE COUNT         1238 a         1274 c         1551 g         1509 t
ORIGIN      
        1 ttcattttgt tttccttggt agcaagcggt tatggtagtg tgaatcaagg ttgtccttgt
       61 ctatgttgtc gcactacttc atcgctgtat ccatacccct catgattgtt atcagcctct
      121 acggatgggg cggagttacc cgtatgattg ccgtatggcc ggatatcgga gaaatcgacc
      181 attaatcctt ctgtcggttt aattcctttg cttactttat acggccccat ccacaatgcg
      241 taattttctt tatagacagc ttcaaacgca ttggtttttg gtttgatgag caatttttta
      301 ttggttctgt ctactgcgaa atattccagt tttgtttggg ctttcagtgt ttcggcattg
      361 tataggtgca tttcggttct gttgcgtatc gttccaaata cgtcgatgtt aataaacaca
      421 tctgtatcgg cattggcagg agaaacaacg tctatgccgc gcaggaaaaa tacggtctgc
      481 accaagtggg aaagaaaggc agtgtcgcgc gggttagtcg tcaaggtttc atttcgataa
      541 tcccccatcc cgccaatatt taagcccaga ctgctcctac ttccgctacc gtctgattgg
      601 gtgcgcgaga gtgcaggggc attaagtgta gataaagaag tggttaaacc tgtcaaaccg
      661 cctgatgttg tttcagcggt ggtttcgtaa cgtggatagg tgtaatcggt acggacggca
      721 gggctgttta tgtattcgcc acgaatcagt gcatcaatgg agtagcgacc tcctgtcaaa
      781 ctgcctgaac cttggtcgcc catagttgca atgtacaatg caacttttcg tccgtgtaat
      841 gcctgtaaat ccatgtcttt aacggcagct ctggcagaag cggccacaag ttcttgttcg
      901 accgcaaagc gtttacctcc gccatgcgat ggaatacctg tcagtgtccc gcaggcggat
      961 aaaataaaaa ctgaaaaaag aataggtatc agcagccgtg cttgcataga ttttctcctt
     1021 tgatgaaaaa caaattgtat caaaattgta aatatagtgg attaaattta aaccagtacg
     1081 gcaaggcgag gcaacgccgt actggtttaa atttaatcca ctataatctc catataataa
     1141 atggctgtct gaagcccata tgcgactata tctgccgaca ctatggtcaa tcagcagtga
     1201 accagcgttc cctcgtcttc gccggtaatg acgcgtttga gcgagccttc tttggcgatg
     1261 ccgaagacga cgatattgag cttgcgttcg cggcagaggg cgaaagcggt cgcgtccatg
     1321 actttgaggt ttttcaacaa ggcttcgtca aaagtaatgg tttcgtagcg tgtggcggac
     1381 gggtcttttt tcgggtctgc ggtgtataca ccgtcgacgt tggtggcttt gagcatcacg
     1441 tcgcagttca tttccgcacc gcgcaatgcg gcggcagtgt cggtcgtgaa gaacgggtta
     1501 ccggtaccgg cggcaaaaat cacgactttg ccttcttcca aatattggat ggctttgggg
     1561 cgggcgtagg tttcggcgat ttgctgcata gacagtgcgg attgtacgcg cgctttgatg
     1621 cctaaagttt caaatgcgtc tttgagtgcc aacgcgttca tcacggtcgc catcatgccc
     1681 atgtagtcgg cggtggcgcg atccatgctg cctgcttggg cggatacgcc ccggaaaata
     1741 ttgccgccgc cgacaacaat accgacttgc acgcccattt taacgacttc ggcaatttcg
     1801 ccgacagttt gaacgatggt atcgtgattg atgccgaacg gatcggaacc catcagggat
     1861 tcgccggaga gtttcagtaa tacgcgtttg tatttgattt gctgtgtcat ggataccttg
     1921 ctttcttgaa tgtcgtcggt cggagttggg tcgtctgaat ttcaaacggt cggaatatta
     1981 atgatagggt gtgtcggttt attattgttt tgttttaaga cggtctgaat attcggtcgt
     2041 cttaaaatag gtaccgtaaa cggttttctc aaaaaaaagc accctgattc gtttggaatc
     2101 caggtgcttt ctttttcata agtgccttac actttggcgg ctgcggctac ttcggctgcg
     2161 tagtcgacaa cggctttttc gatgccatcg cctactttgt agcgtacgaa gctgatcact
     2221 tcagtgccgt tttctttagc gaattgggca acagtttgat cggggttcat cacgaatgct
     2281 tggccgttca gagtgatttc agccaagaat ttacggatgc ggccttcaac cattttagcg
     2341 gcgatgtcgg caggtttgcc ggaagcgatg gcttgctcgg tgtagatgtg gcgttctttt
     2401 tcaacggttt cggcatctac ttcggcttcg cttacgcatt gtggtttagc ggcaacaata
     2461 tgcataccga ttttgcgtgc tacgtcttca gagcctttgt actcaaccaa tacgccttcg
     2521 gtcgccaatg cgccgtggat gtaggcaacc agttggttgg cagtgtcgat cacttggaag
     2581 cgacggacag acatattctc gcccaatttg gcgatgatgg ctttgcgttc tgcttcaacc
     2641 agttcgctca gttcttcaac agaagccggt tttttctcgg cagcagtttt cgcaacgaag
     2701 ttggcaaatt ctacgaagcc cgcgtcttta gcaacgaagt cggtttcgca gtttacttcg
     2761 accaatgcgc cgacattgcc gttgatcgcg taagccaata cgccttcggc agcggtacgg
     2821 ccggccagtt taccggcttt cgcaccggat ttgatacgca ggatttcttc ggctttgtcg
     2881 aagttgcctt cggcttcaac caaggctttt ttgcattcca tcatgcccaa gccggtagcg
     2941 gcgcgcaggt cggcaaccat ttttgcagta atttctgcca ttttgaatct cctagatttt
     3001 tgggaaatac ggaaaggatt ttccgcattc gggaatcgtg tgccgcgaac ggacgttcag
     3061 acggcatatt tgagaaaagg ggcataacgc ccctcttcat gtatactgaa ttactcggca
     3121 gcagcttctt gggcagcggc tacggtttct tgcagcgctt ggtttttgcc ttccaaaact
     3181 gcgtcagcga tgccgcggca gtacaggcgg atggctttgg cggagtcgtc gttgccgggg
     3241 atgacgtatt tcacgccgtc agggctgttg ttggtatcga ctacggcgat aacggggatg
     3301 cccagttttt cagcctcgac cagagtacct ttttggtagc cggtatcgat aacgaaaatc
     3361 gcgtcgggca ggcctttcat gtttttgata ccgcccaaag aacgttccag tttttcaaca
     3421 tcgcgttgca tttccagaat ttcttttttg ctgaaaccgc tttcggcagc attttccaag
     3481 gctgcggttt tttcttccag gcgtttgatg gattgcttaa cggttttgta gttggtcagc
     3541 ataccgccca accagcggta atcaacgaaa ggcataccgg cacgggtcgc ttcttcgcgg
     3601 atgatgtcgc gggcttggcg tttggtacct acgaacaata ctgtaccttt gttggcaacc
     3661 aaacggcgta cggcttcttg cgcgtcttgg aacatcggca gggttttttc caagtttacg
     3721 atatggattt tgttgcgtgc gccgaaaatg tattgtgcca ttttcgggtt ccagaaacgg
     3781 gtttggtggc cgaagtggac accggcttca atcatctgac gcatagtaat ttgagacatt
     3841 ttgatttcct tgaaagggtt aagggcacac attcaatcgc atagaacttg ataggcgatg
     3901 cctattgtca agcacccttc ggcgaaagtg ggcataagtt ttaaaaaata aaagagtgtt
     3961 tccgaaatgg aaaactgacg gattatagcg gataagaggc cgtctgaaaa gggattcagg
     4021 gttttgtgcc gctgtctttt tgccgttgtg cacgctgctg ttcgaattct gcctgttcct
     4081 gctgcttcat caagcggttg cggcggcgga cggttacgac gaagaccgtg aacacggtgg
     4141 gcagaaccgc ccaaaaaacc aaataaatca aggcgcgcgc aatactcggc tgcgcggcgg
     4201 aaaacatcac ggcaacaaaa agatagccga tggcgacgat gtgccacatt gtgtgcgtcc
     4261 tgtttgaatg ttaacaaaat cgttataatc gcaacattct accgcaatcc tgaaaggccg
     4321 tctgaaatga ggaacgagga aaaacgcgcc ctgcgccgcg aattgcgcgg gcggcgttcg
     4381 caaatggggc gggacgtgtg ggcggcggca acggtaaaaa tcaaccacct gctcaaacgt
     4441 tatattaaaa aagggcggaa aatcggcgtg tattggccga tgggcaagga attgcgtttg
     4501 gacggctttg tccgtgtcgc acaaaaacgc ggcgcaaaac tttatctgcc ttatatcgaa
     4561 ccgcgttcgc agcggatgtg gtttacgccg tatcctgaaa gcggaatgga acgggagcgc
     4621 atacggggca gggcgaagtt gaacgtgccg cagtttgcag ggcgcaaaat ccgcgtgcac
     4681 ggtttgtcgg tattgctcgt cccgcttgtc ggcatagacc gcgaaggcta ccgcttgggg
     4741 caggcaggcg gctattacga tgcgacgctt gcagcgatga aataccgttt gcaggcaaaa
     4801 accgtgggcg tgggctttgc ctgccaactg gtcggcacgc tgccgcgcga ggcgcacgac
     4861 ctgccgctgg acggttttgt gtcggaggcg gggatattgt gtttttagcc gttcagacgg
     4921 cattccgggc ggaaatgccg tctgaaggcg gaatattggg agaaaaggat gtcggaaaag
     4981 ataatactgc cggtcttgtc attgggcggc gttcggctcg aaccgttgga tgtgcatcat
     5041 gaaacgggtt tgcgcgaggc ggtttgcgat ggggaggttt ggaagctggg ggtaacgtcc
     5101 gcgccccatc cggatagggt ggcagactat atcgggacag cattggcaac gcgtttggcg
     5161 tttgcggttg tcgatgaaga ggcgggcagg gtggtcggga caacggcgta ttatcatttt
     5221 gaaccgcaga ttccgcgttt ggatatcgga ttcacatggt atgcggcatc ggcacggcgg
     5281 acacggataa acacctgttg caaaatcatg ctgttggatt acgcatttga tgttttggct
     5341 tgccgttgcg tgggatggcg cacggatatt ctgaaccttg cctcgcaacg tgccatcgaa
     5401 cggctgggtg cggaaaaaga cggcgtgctg cgtatgtata tgctccgtaa agacggcagt
     5461 gtgcgcgata cggtcgtgta cagtatgctg agggaagatt ggtgcaaaaa cagggaaatc
     5521 ctgaccggca ggttggcagg gtatggcgtg caggtgtgag gcagtatttt ca
//
LOCUS       DAXHPV010000130         5553 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.130, whole genome shotgun sequence.
ACCESSION   DAXHPV010000130 DAXHPV010000000
VERSION     DAXHPV010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5553)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5553)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5553
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.130"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(254..2050)
                     /locus_tag="ACFM6C_001650"
     CDS             complement(254..2050)
                     /locus_tag="ACFM6C_001650"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017146933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HFC6159080.1"
                     /translation="MNTVSNYLSALREAMKAQGLDALVIPSADPHLSEYLPEHWQARR
                     ELSGFTGSVGTFVLTTDEAGVWVDSRYWEQAAKQLAGSGIELQKSGQVPPYNEWLAAN
                     LPENAAVGIPSDMVSLTGKRTLAQSLTAKNIRIEHPDDLLDQVWTSRPAIPAETVFVH
                     DPAYVSETAAEKLARVRAVMAEKGADYHLVSSLDDIAWLTNLRGSDVPFNPVFVSYLL
                     IGKDNAVLFTDRCRLNAEAAAALQTAGITVEPYAQVADKLAQIGGALLIEPNKTAVST
                     LVRLPESVRLIEGINPSTLFKSCKSEADIARIREAMEHDGAALCGFFAEFEDIIGNGG
                     SLTEIDVDTMLYRHRSVRPGFISLSFDTIAGFNANGALPHYSATPESHSTISGNGLLL
                     IDSGAQYKGGTTDITRVVPVGTPTAEQKRDNTLVLKAHIALAEAVFPENIPSPLIDAI
                     CRKPLWQAQCDYGHGTGHGVGYFLNVHEGPQRIAFAAPATPETAMKKGMVTSIEPGLY
                     RPGKWGIRIENLAANQAVAAPQETEFGSFLCFETLTLCPIDTRLIDTALMTDGEIDWV
                     NRYHAEVRRRLEPLTEGAAKAWLIKRTEPLAR"
     gene            2106..2447
                     /locus_tag="ACFM6C_001651"
     CDS             2106..2447
                     /locus_tag="ACFM6C_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159081.1"
                     /translation="MPSEKHNHLIKSPACCKTDGLIGWCVFARKKRCKVVCCKILGIK
                     CRFMPFFGSNMENIVKFEHEVLIVCVGRYLDYVTIRVFIKISLPGGILFLKTVGFGFV
                     WGQSRPNWSNR"
     gene            2508..3761
                     /locus_tag="ACFM6C_001652"
     CDS             2508..3761
                     /locus_tag="ACFM6C_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NRAMP family divalent metal transporter"
                     /protein_id="HFC6159082.1"
                     /translation="MSEQHISTWKSKINALGPGIMMASAAVGGSHLIASTQAGALYGW
                     QIALIIILTNLFKYPFFRFSAHYTLDTGKSLIEGYAEKSRVYLWVFLILCIISATINA
                     GAVAIVTAAIVKMAIPSLMFDAGTVAALIMASCLIILVSGRYRALDRVSKIIIVTLSI
                     ATLAAAGIAMSRGMQMQPDFIEPTPWTLAGLGFLIALMGWMPAPIEISAINSLWVTEK
                     QRINPSEYRDGIFDFNVGYIASAVLALVFLALGAFVQYGNGEAVQMAGGKYIGQLINM
                     YAVTIGGWSRPLVAFIAFACMYGTTITVVDGYARAIAEPVRLLRGKDKTGNAEFFAWN
                     IWVAGSGLAVIFWFDGVMANLLKFAMIAAFVSAPVFAWLNYRLVKGDKRHKLTAGMNF
                     LAIVGLLYLTGFAVLFLLNLSGLLA"
     gene            3916..5427
                     /gene="lysS"
                     /locus_tag="ACFM6C_001653"
     CDS             3916..5427
                     /gene="lysS"
                     /locus_tag="ACFM6C_001653"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009313040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HFC6159083.1"
                     /translation="MSEQNHPQIEPQLDENQIIALRREKLHNIRQQRNAYPNDFKRDS
                     FAADLHAQYGEIGKEELDPQAVPVKVAGRMMLKRQMGKASFATIQDVTGQIQLYLNNK
                     GVSQEVLDDFNHWDLGDIVGAEGTLFKTNHGELTVRVSDIRLLSKSLRPLPDKHKGLS
                     DQETKYRQRYVDLIANEESRNTFIKRSQIIQSVRNFMVGEHYLEVETPMMHPIPGGAT
                     AKPFVTHHNALDIPLYLRIAPELYLKRLVVGGLERVFEINRSFRNEGMSVRHNPEFTM
                     IEFYEAFSDYERMMQMAEDIIRNASCTVNGTANITYNGKEVDLESPFERLTILEAIKK
                     YNPHYTDEQLNDAEWLKKEIVKHGESLPPSPGIGSLQLALFEGCAEGKLWNPTFIIDY
                     PVEVSPLARASDTKQGLTERFELFVVGRELANGYSELNDPEDQAERFKAQVAQKDAGD
                     DEAMHYDADYIRAMEFGLPPTGGCGIGIDRLVMLLTDSQTIRDVILFPQMRPE"
BASE COUNT         1208 a         1415 c         1610 g         1320 t
ORIGIN      
        1 cggaatatag cggattaaca aaaaccagta cggcgttgtc gcgccttagc tcaaagagaa
       61 cgattctctc aggtgctgaa gcaccgagtg aatcggttcc gtactattcg tactgtctgc
      121 ggcttcgtcg ccttgtcctg atttttgtta atccactata tttgcttgcg gcaagatgaa
      181 aacggtgcgg gatgttttgg gaaaccaatg ccgtctgaag ggctttcaga cggcattttt
      241 tgcgccgtgc tgtttaacgc gccagcggtt cggtgcgttt gatcagccac gcttttgccg
      301 cgccttcggt cagcggctcg aggcggcggc ggacttcggc gtggtagcgg ttgacccagt
      361 cgatttcgcc gtcggtcatg agggcggtgt ctatcaggcg ggtgtcgatg gggcagaggg
      421 tcagggtttc aaaacagagg aagctgccga attcggtttc ttgaggggcg gcgacggctt
      481 ggttggcggc aaggttttca atgcggatgc cccattttcc cgggcggtag agtccgggtt
      541 cgatggaggt aaccatgcct tttttcatgg cggtttcggg cgtggcgggg gcggcgaagg
      601 cgatgcgctg cgggccttcg tggacgttga ggaaatagcc tacgccgtgt ccggtgccgt
      661 ggccgtagtc gcattgcgcc tgccacaggg gtttgcggca aatcgcatca atcagcggcg
      721 aggggatgtt ttctgggaac acggcttcgg caagcgcgat atgggctttg agaacgaggg
      781 tgttgtcgcg tttttgttcg gcggtgggtg tgccgacagg gacgacgcgg gtgatgtcgg
      841 tcgtgccgcc tttgtattgc gcgccggagt cgatgagcag cagcccgttg ccgctgatgg
      901 tgctgtggct ttcgggcgtt gcgctgtaat gcggcagtgc gccgttggcg ttgaagcctg
      961 cgatggtgtc gaaactcaat gaaatgaagc ctgggcgcac gctgcggtgg cgataaagca
     1021 tggtgtccac gtcgatttcg gtcaggctgc cgccgttgcc gatgatgtct tcaaactcgg
     1081 cgaagaaacc gcacaacgcc gcgccgtcgt gttccatcgc ttcgcggatg cgggcgatgt
     1141 cggcttcgga tttgcaggat ttgaacagcg tggacgggtt gattccctcg ataaggcgca
     1201 cgctttcggg caggcgcaca agcgtgctga cggcggtttt gttcggttcg ataagcaacg
     1261 cgccgccgat ttgcgcgagt ttgtcggcaa cttgggcgta aggctcgacc gtgatgcctg
     1321 cggtttgcag cgcggcggcg gcttcggcat tcagacggca tcggtcggta aacaggacgg
     1381 cgttgtcttt gccaatcaat agataggaca cgaaaacggg attgaaaggc acgtcgctgc
     1441 cgcgcaggtt ggtcagccag gcgatgtcgt cgagcgagga aaccaagtgg taatccgcgc
     1501 ctttttccgc catcacggcg cgcacgcggg cgagtttttc ggcggcggtt tcggagacgt
     1561 aggcggggtc gtggacgaac acggtttcgg cggggatagc gggacggctt gtccacactt
     1621 ggtcaagcag atcgtccggg tgttcgatgc ggatgttttt ggcggtcagg gattgcgcca
     1681 aagtgcgttt gccggtgagc gagaccatat cggaagggat gccgacggcg gcgttttcgg
     1741 gcaggtttgc cgcgagccat tcgttatacg gcggcacttg cccgcttttt tgcagttcga
     1801 tgccgctgcc cgcaagctgc ttggcggctt gttcccaata gcggctgtcc acccatacgc
     1861 ccgcttcatc ggtggtcagg acaaacgtgc cgaccgagcc ggtaaagccc gacaattcgc
     1921 gccgcgcctg ccaatgttcg ggcaggtatt cggacaggtg ggggtcggcg gaagggatga
     1981 cgagtgcatc caagccttgc gccttcatgg cttcgcgcaa tgcggacagg taattcgata
     2041 cggtattcat aacagttcct ccaatcgggt tttgcggctt cagacggcat ggacggaaat
     2101 ctgaaatgcc gtctgaaaaa cataaccatc ttatcaaatc gccagcctgc tgcaaaacgg
     2161 acgggctgat cggatggtgc gtgtttgcgc gaaaaaagcg atgtaaggtt gtttgttgta
     2221 aaattttagg cataaaatgt cgttttatgc ctttttttgg aagtaatatg gaaaatatag
     2281 tcaagtttga gcatgaagtt ctaatagtgt gtgttggcag gtatttggat tacgttacaa
     2341 tacgtgtttt catcaaaatt tccctaccgg gcggtatcct gtttttgaag acggtaggat
     2401 ttgggtttgt ttgggggcaa tcccgcccaa attggagcaa tagatagggc tgtgtccgaa
     2461 tatgcggctc tgtgtgttga aacacagtta aaaatacgga agactttatg tccgaacaac
     2521 atatttcgac ttggaaaagt aaaatcaacg cattgggtcc ggggatcatg atggcttcgg
     2581 cggcggtcgg cggttcgcac ctgattgcct cgacgcaggc gggcgcgctt tacggctggc
     2641 agatcgcgct catcatcatc ctgaccaacc tcttcaaata cccgtttttc cgcttcagcg
     2701 cgcattacac gctggacacg ggcaagagcc tgattgaagg ttatgccgag aaaagccgtg
     2761 tttatttgtg ggttttcctg attttgtgca tcatttccgc cacgattaac gctggcgcgg
     2821 tcgccatcgt aaccgccgcc atcgtcaaaa tggcgattcc ctcgctgatg tttgatgccg
     2881 gcacggttgc cgccttgatt atggcatcct gcctgattat tttggtgagc ggacgttacc
     2941 gcgctttgga tcgcgtttcc aaaatcatca tcgttacttt gagtatcgcc acgcttgccg
     3001 ccgccggcat cgctatgtcg cgcggtatgc agatgcagcc cgattttatc gagccgacac
     3061 cgtggacgct tgccggtttg ggcttcctga tcgcgctgat gggctggatg cccgcgccga
     3121 ttgaaatttc cgccatcaat tctttgtggg taaccgaaaa acaacgcatc aatccttccg
     3181 aataccgcga cgggattttt gatttcaacg tcggttatat cgccagtgcg gttttggctt
     3241 tggttttcct tgcactgggc gcgtttgtgc aatacggcaa cggcgaagca gtgcagatgg
     3301 cgggcggcaa atatatcggg caattgatca atatgtacgc cgttaccatc ggcggctggt
     3361 cgcgcccgct ggtggcgttt atcgcgtttg cctgtatgta cggcacgacg attaccgtcg
     3421 tggacggcta tgcccgtgcc attgccgaac ccgtgcgcct gctgcgcgga aaagacaaaa
     3481 cgggcaacgc cgaattcttt gcctggaata tttgggtggc gggcagcggt ttggcggtga
     3541 ttttttggtt tgacggcgta atggcgaatc tgctcaaatt tgcgatgatt gccgcctttg
     3601 tgtccgcccc cgtgtttgcc tggctcaact accgcctggt caaaggagac aaacggcaca
     3661 agcttaccgc cggtatgaat tttcttgcca ttgtcggctt gctctacctg accggatttg
     3721 ccgttttgtt cctgttgaac cttagcggac ttttggcata ggtttcaaaa tctgaatgcc
     3781 gtctgtaata ttttcagacg gcattgccct ttcctagaaa aaaacaccga catcgcgtaa
     3841 aatatgcaca aattttgtga ttcaatcagg tcgtctgaaa cagattgcgc ctgatttatt
     3901 ttttcggaaa ataccatgag cgaacaaaac catccgcaaa tcgagccgca gttggacgaa
     3961 aaccaaatta tcgccctgcg ccgtgaaaaa ctgcacaaca tccgccaaca gcgcaacgcc
     4021 taccctaacg atttcaaacg cgacagcttt gccgccgatt tgcacgccca atacggcgaa
     4081 atcggcaaag aagaactcga cccgcaggcc gttcccgtca aagtggccgg ccgcatgatg
     4141 ctgaagcgtc aaatgggcaa agccagcttc gccaccattc aagacgttac cggtcaaatc
     4201 cagctttatc tgaacaacaa aggcgtgagt caggaagttt tggacgattt caaccattgg
     4261 gatttgggcg atatcgtcgg cgcggaaggt actttgttca aaaccaacca cggcgaattg
     4321 accgtgcgcg tgtccgacat ccgcctgttg tccaaatcct tgcgtccgct gccggacaaa
     4381 cacaaaggct tgagcgatca ggaaaccaaa taccgccaac gctatgtcga tttgattgcc
     4441 aacgaagaat cgcgcaatac ctttatcaaa cgcagccaaa tcatccaatc cgtgcgtaat
     4501 tttatggtgg gcgagcatta tctcgaagtc gaaaccccga tgatgcaccc gattcccggc
     4561 ggcgcgacgg caaaaccctt cgttactcat cacaatgcct tagatattcc gctttacctg
     4621 cgtatcgcgc ctgagctgta tttgaaacgc ctggttgtcg gcggcttgga acgcgtgttt
     4681 gaaatcaacc gcagcttccg caacgaaggc atgtccgtgc gccacaaccc cgaatttacg
     4741 atgattgaat tttacgaagc cttctccgac tacgaacgta tgatgcagat ggcagaagac
     4801 atcatcagaa acgcatcgtg cacagtaaac ggtacggcaa acatcactta caacggcaaa
     4861 gaagtcgatt tggaaagccc gtttgagcgt ctgaccatcc tcgaagccat caaaaaatac
     4921 aatccgcact acaccgacga gcagttgaac gatgcggaat ggctgaaaaa agaaatcgtc
     4981 aaacacggcg aaagcctgcc gccgtccccg ggcatcggca gcctgcaact cgcgctgttt
     5041 gaaggttgcg ccgagggcaa gctgtggaac ccgactttca tcatcgatta cccggtcgaa
     5101 gtttccccat tggcgcgcgc ttcggatacc aaacaaggtc tgaccgaacg tttcgaattg
     5161 ttcgttgtcg gccgcgaact ggcaaacggc tattccgagt tgaacgaccc cgaagaccaa
     5221 gccgaacgct tcaaagcgca agtggcgcaa aaagacgcgg gcgacgacga agcgatgcac
     5281 tacgatgccg actacatccg cgcgatggag ttcggtctgc cgccgacagg cggttgcggc
     5341 atcggtatcg accgcttggt aatgctgctg accgattcgc aaaccatccg cgatgtgatt
     5401 ctgtttccgc agatgcgccc cgagtaatca taaaaacagt tgaaatggca atgccgtctg
     5461 aacccgattg gattcagacg gcattttgta tggcaggatt gatagtgaat taacaaaaat
     5521 caggacaagg cggcgagccg cagacagtac aaa
//
LOCUS       DAXHPV010000131         5551 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.131, whole genome shotgun sequence.
ACCESSION   DAXHPV010000131 DAXHPV010000000
VERSION     DAXHPV010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5551
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.131"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(43..810)
                     /locus_tag="ACFM6C_001654"
     CDS             complement(43..810)
                     /locus_tag="ACFM6C_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HFC6159084.1"
                     /translation="MSSNKASFFTRLRRLCRLTVWLFKTGKNLRGIDGGCPESRNRAV
                     IELGRGVLAALDIGLEVGRPAPEHPNGVLVAANHVSWLDIFAMSAVYPSSFIAKQEIK
                     SWPVLGKMGQNAGTVFINRNSRRDIEPINRAVCETLQRGQNVSFFPEARTSSGLGLLP
                     FKAALFQSAIDAGAKVLAVALRYYDETGKRTARPSYADVGLPTCLWRIVSMKKLTIKV
                     DFVCVADAAESEDRYALKDKIEESIRAVVADDADIAV"
     gene            complement(898..1725)
                     /gene="mutM"
                     /locus_tag="ACFM6C_001655"
     CDS             complement(898..1725)
                     /gene="mutM"
                     /locus_tag="ACFM6C_001655"
                     /EC_number="3.2.2.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008534 - oxidized purine nucleobase
                     lesion DNA N-glycosylase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase"
                     /protein_id="HFC6159085.1"
                     /translation="MPELPEVETTLRGIAPHIEGKTVEAVVLRQLKLRWQINPDLGEI
                     LSGRQVLSCGRRAKYLIVRFQTGILLIHLGMSGSLRIFTPSDGRIGRPDRHDHVDIVF
                     SDGTVMRYRDPRKFGAILWYEGIEEHHPLLEKLGPEPLSEAFCADYLYARLKAQKRAV
                     KLALMDNAVVVGVGNIYANESLFRAGISPHRPANRLKKKECALLVETVKAVLRRAIET
                     GGSTLRDFVDSDGKSGYFQQEYTVYGRHNQPCPQCGGLVVKETLGQRGTFYCPNCQK"
     gene            complement(1777..2442)
                     /locus_tag="ACFM6C_001656"
     CDS             complement(1777..2442)
                     /locus_tag="ACFM6C_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HFC6159086.1"
                     /translation="MDAWFEDTAMGRYVAKLEQDFFGRYLDSYRFSGMCAVQVGGPWL
                     SLSEDVVCVPRDMSMSAENMALADVSADMLLFPHTLEGGVSSQILSEAHRILKPCGRL
                     MLTGFNPYSLWGFSRWFDGERLPEKRFCLPLPELKRRLADAGFDIEFGKFMVYLPPVS
                     SLGQIRFWRFMEKAGDRWWPQCAAVYGLVLVKRAAGVTPLPEWDGYLGGKALAAGAAR
                     VAD"
     gene            2621..4597
                     /locus_tag="ACFM6C_001657"
     CDS             2621..4597
                     /locus_tag="ACFM6C_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HFC6159087.1"
                     /translation="MSKLKTIVLTASGLSVCSGSLYAQNTSSHQIGLAIMRLNSSILD
                     LHPTKQYFQSGSLWGELRQGFQMGEVNPELVRRHESKFIASRSYFDRVVNRSRPYMYH
                     IANEVKKRNMPAEAALLPFIESAFVTKAKSHVGASGLWQFMPATGRHYGLEKTPVYDG
                     RHDVYAATDAALNYLQYLYGLFGDWPLAFAAYNWGEGNVGRAINRARAQGLEPTYENL
                     RMPNETRNYVPKLLAVRNIIAAPQSFGMNISDIDNKPYFQAIEPDRPLDNEAIARLAG
                     ITQSELLALNPAFNVPAFIPKSKRKLLLPVASVQTFQSNYLNAAPDSLFSWEVYTPAA
                     KTSLSDISTATGMSIADIKRLNNLNGNLVNAGRSILVAKNGKTLQTASESVVSIDIDN
                     TPDTYRSNMPAGTVNVGIARIRPAAAQTADITVAPLPQKTVRTEPDPLVRIAEPALAT
                     AAAQPQTEKQTAMPSETQTATLAQIIPQNDMQAADELMQLVARNNLRRQAEETISAVI
                     GTPDTVAEHNISASPQHTVAADGKRRARLETRVAKAADGEAEISPLHASIHRVVEGDT
                     LFNIAKRYNVSVADLIVANNIKGNTIQKGQVLRLAQAAPAQTRIEKVSYTARKGDTFK
                     SIAARFNIHIDDIRRLNPNLNTINPGQRVKLIGS"
     gene            4665..5357
                     /locus_tag="ACFM6C_001658"
     CDS             4665..5357
                     /locus_tag="ACFM6C_001658"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_function: GO:0140098 - catalytic activity, acting on
                     RNA [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase"
                     /protein_id="HFC6159088.1"
                     /translation="MKLIKYLQYQGIGSRKQCQWLIAGGYVFINGTCMDDTDADIDSS
                     SVETLDIDGEAVTVVPEPYFYIMLNKPEDYETSHKPKHYRSVFSLFPDNMRNIDMQAV
                     GRLDADTTGVLLITNDGKLNHNLTSPSRKIPKLYEVTLKHPTGETLCETLKNGMLLHD
                     ENETVCAADAVLENPTTLLLTITEGKYHQVKRMIAAAGNRVLHLHRRRFAHLETENLK
                     PGEWKFIECPKF"
BASE COUNT         1447 a         1792 c         1200 g         1112 t
ORIGIN      
        1 tccacaaaag cgaatcatac tgccacattc cgacaaccgg tttcagacag cgatatccgc
       61 atcgtcggcg acaacggcac ggatgctttc ttcgatttta tcttttaaag cataacggtc
      121 ttcgctttcc gccgcatccg ccacgcaaac gaaatcgact tttatcgtca attttttcat
      181 agacacgatg cgccacaggc aggtcggcaa accgacatcg gcatatgagg gacgagccgt
      241 cctttttccc gtttcgtcat aataacgcag cgcgaccgcc aaaacctttg cccccgcatc
      301 gatggcggat tggaacagcg cggctttgaa cggcaaaagc cccaatccgg aggaagtccg
      361 cgcttcgggg aaaaaactga cgttttgacc gcgttgcaag gtttcgcaga cggcgcggtt
      421 aatcggttcg atgtcgcgcc gcgaattgcg gttgatgaac accgttcccg cgttctgccc
      481 catcttgccc aataccggcc agcttttgat ttcctgcttg gcgataaagc tgctcggata
      541 aaccgcgctc atcgcgaaaa tatccagcca ggacacgtgg ttggcggcaa ccaagacacc
      601 gttcggatgt tcgggtgcgg gtctgcccac ctccaatccg atatccaaag ccgccaaaac
      661 ccccctgccc aactcgatta ccgcccgatt gcgcgactcg gggcagccgc cgtcaatacc
      721 gcgcaggttt ttgccggttt tgaatagcca gaccgtcaag cggcacaagc ggcgcagacg
      781 tgtaaaaaat gaagctttat ttgaagacat gaacaattct ttcccgataa tcggtgtttg
      841 ttgttgaaac gttcggacgg cataccgata aaatgccgtc tgaaaccgtt ttcagcccta
      901 tttctgacaa ttcgggcagt aaaacgtgcc gcgctgcccc aaagtttctt tcacaaccaa
      961 accgccgcac tgggggcacg gctgattgtg ccgcccgtac accgtatatt cctgttggaa
     1021 gtagccgctt ttgccgtcgc tgtccacaaa gtccctcagc gtactgccgc ccgtttcaat
     1081 ggcgcgccgc aacaccgctt tgacggtttc aaccaaaagc gcacactctt tctttttcag
     1141 gcggttggca ggacggtggg gcgaaatgcc cgccctaaac aggctctcgt tggcataaat
     1201 attgcccaca ccgaccacga ccgcattgtc catcagggca agtttgaccg cgcgcttctg
     1261 cgccttcagc cttgcataca gataatccgc acaaaatgcc tccgacaaag gctccggccc
     1321 cagtttttcc agcagcggat gatgctcttc aattccctca taccaaagta tcgcgccgaa
     1381 ctttcgcgga tcgcggtaac gcatgaccgt gccgtctgaa aacacaatat cgacgtgatc
     1441 gtgtctgtcc ggcctgccga tacgtccgtc cgacggcgta aaaatccgca agctgcccga
     1501 catccccaag tgaatcagca aaatccccgt ttggaaacgg acaatcagat acttcgcccg
     1561 cctgccgcag gacaaaacct gccgaccgga caaaatctcc cccaaatcgg gattaatctg
     1621 ccagcgcagc ttcaattggc gcaataccac ggcttccacc gttttccctt caatatgcgg
     1681 cgcgatgccg cgcaacgtcg tttccacttc cggcaattca ggcataaccc ctcccgacat
     1741 ttcttctgac agatgccgtc tgaaagacgg ctgtccctaa tccgcaaccc ttgccgcacc
     1801 cgccgcaagg gctttgccgc ccaaataccc gtcccactcg ggcaggggcg ttacgcccgc
     1861 cgcccttttg accaaaacca aaccgtacac tgcggcacat tgcggccacc aacggtcgcc
     1921 cgccttttcc ataaaccgcc aaaagcgtat ttgcccgagc gacgaaacgg gcggcagata
     1981 caccataaat ttcccaaatt caatatcgaa accggcatcg gcaagccgcc ttttcaactc
     2041 gggcaacggc agacaaaacc gtttttccgg caggcgttcg ccgtcaaacc aacggctgaa
     2101 tccccagagc gaatacggat tgaaacccgt cagcatcaag cgcccgcacg gtttcaatat
     2161 ccggtgcgct tccgacagga tttgcgaaga aacaccgcct tcaagcgtat gcggaaaaag
     2221 cagcatatcc gcagaaacat ccgccaaagc catattctcc gccgacatcg acatatctcg
     2281 cggcacacag acaacatctt cagacaggct cagccacgga ccgcccacct gaaccgcaca
     2341 cattcccgaa aaacggtatg aatccagata ccgcccgaag aaatcctgtt ccaattttgc
     2401 aacataccgc cccatcgccg tatcttcaaa ccatgcatcc atattgcgtc cgtttcaaac
     2461 agattgcctg ccgatattct attccaaaca ggatttctgt caaaaaacac atcggccgcc
     2521 catttccgaa tccgcataaa gttcctgtaa aacttgacgc tttttcagtc aaacagtacc
     2581 atcggacgat aaaatatgtt tattccgccg aatataaatc atgtccaaac tcaaaaccat
     2641 cgtcctgact gcctcgggtc tctccgtctg ttccggctca ctatacgctc aaaacacctc
     2701 ttcacaccaa atcggtttgg cgattatgcg cttaaactct tcaatactcg acctgcaccc
     2761 gacaaaacaa tatttccaat ccggcagcct gtggggcgag ctgcgccaag gcttccagat
     2821 gggcgaagtc aatcccgaac tggtacgccg ccacgaaagt aaattcatcg caagccgcag
     2881 ctatttcgac agggtcgtca accggagccg accctatatg taccatattg ccaatgaagt
     2941 caaaaaacgc aatatgcccg ccgaagccgc cctgcttccc ttcatcgaaa gcgcgttcgt
     3001 caccaaagcc aaatcgcatg tcggcgcatc gggcctgtgg cagtttatgc ccgctaccgg
     3061 caggcattac ggcttggaaa aaacaccggt ttacgacggc aggcacgacg tttacgccgc
     3121 caccgatgcc gcactcaact acctgcaata cctctatgga ctgttcggcg actggccgct
     3181 cgcctttgcc gcctacaact ggggtgaagg caacgtcgga cgcgccatca accgcgcccg
     3241 cgcccaaggg ctcgaaccga cctacgaaaa cctgcgtatg cccaacgaaa cgcgcaacta
     3301 tgttcccaag ctgctcgccg tgcgcaacat cattgccgcc ccccaatctt tcggcatgaa
     3361 tatcagcgac atagacaata aaccctattt tcaggcaatc gaaccggacc gtccgctcga
     3421 caacgaagcc atcgcccggc ttgccggcat cacgcaaagc gagctgctcg ccctaaaccc
     3481 cgcattcaac gtccccgcgt tcatccccaa aagcaaacgc aaactgctgc ttcctgtcgc
     3541 atccgtccaa accttccaaa gcaactacct caacgccgca cccgacagcc tgttttcatg
     3601 ggaagtctat acgcctgccg ccaaaaccag cctgtccgac atctcgacgg caaccggcat
     3661 gagcattgcc gacatcaaac gcctcaacaa cctgaacggc aaccttgtca acgcaggacg
     3721 cagcatcctt gtcgccaaga acggcaaaac ccttcagacg gcatcggaat ccgtcgtttc
     3781 catcgacatc gacaatacgc ccgacaccta ccgttccaat atgccggcag gcacggtgaa
     3841 cgtcggcatt gcccgaatcc gacccgccgc cgcacagaca gcggacatta ccgtcgcacc
     3901 tttgccgcag aaaaccgtcc gtacggaacc cgatcccctt gtccgtattg ccgaacctgc
     3961 ccttgcgaca gccgcagcgc aacctcaaac cgaaaaacag accgccatgc cgtctgaaac
     4021 ccaaaccgca acactcgcgc agatcatccc ccaaaacgac atgcaggcgg cagacgaact
     4081 catgcagctt gttgcccgaa acaacctgcg ccgacaggct gaagaaacca tctccgccgt
     4141 catcggcacg cctgacacag ttgccgaaca caacatttcc gcatctccgc aacataccgt
     4201 tgccgccgac ggcaaacgcc gggcacgttt ggaaacgcgc gtagccaaag ctgccgacgg
     4261 cgaagccgaa atctccccgc tccatgccag catccaccgc gttgtagaag gcgacaccct
     4321 gttcaacatt gccaaacgct acaacgtcag cgtagccgac ctgattgtcg ccaacaacat
     4381 caaaggcaac accatccaaa aaggacaggt actccgcctg gcgcaggcag cccctgccca
     4441 aacccgtatt gaaaaagtat cctacaccgc gcgcaaaggc gacaccttca aaagtatcgc
     4501 cgcgcgcttc aatatccata tcgacgacat ccgccggctc aatcccaacc tgaacaccat
     4561 caatccggga cagagggtca aactgattgg aagctgattc ggatacggca catgacagga
     4621 ctttctcagt cccgtctttt tcatcccaca tttcccatac catcatgaaa ctcatcaaat
     4681 acctgcaata tcaaggcata ggaagccgca agcagtgcca atggctgatt gctggcggtt
     4741 atgttttcat caacggaacc tgcatggacg acaccgatgc agacatcgat tcctcatccg
     4801 tcgaaacgtt ggatattgac ggggaagcag taaccgtcgt tcccgaaccc tatttctaca
     4861 tcatgctcaa caagcctgaa gattacgaaa cttcgcacaa acccaagcac taccgcagcg
     4921 tattcagcct gttccccgac aatatgcgga acatcgatat gcaggcggtc ggcaggctgg
     4981 atgcggatac gaccggcgta ttgctgatta ccaacgacgg caaactgaac cacaacctga
     5041 cttcgccgag cagaaaaatt cccaagctat acgaagtaac gctcaaacac cccacaggag
     5101 aaacgctctg cgaaaccttg aaaaacggca tgctgctcca cgacgaaaac gaaaccgttt
     5161 gtgccgccga tgccgttttg gaaaacccga ccaccctgct gctgaccatt accgaaggaa
     5221 aataccacca agtcaaacgc atgatcgccg ccgccggcaa ccgcgtgcta caccttcatc
     5281 gtcggcgatt cgcacatttg gaaacagaaa acctcaaacc cggggaatgg aaatttatcg
     5341 aatgtccaaa attctgaaat aacatccaag aattccattt atattcatcc acatactcat
     5401 taaatatatg gtttaaccca atttaacgca aaaaatcaat ttacgatata atccatttgt
     5461 ctgagtaacg cctgttcaag caggcttatg agtaagacgt tttccccgta atgtgttttg
     5521 ccatctatac ttctcccctt gtatagatgg t
//
LOCUS       DAXHPV010000132         5541 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.132, whole genome shotgun sequence.
ACCESSION   DAXHPV010000132 DAXHPV010000000
VERSION     DAXHPV010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5541
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.132"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(77..277)
                     /locus_tag="ACFM6C_001659"
     CDS             complement(77..277)
                     /locus_tag="ACFM6C_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159089.1"
                     /translation="MIGRLFRIFFFFALAALIIKRLFSRRQKRALCEVAKISAWVLLG
                     SAAATLFWYLVMLYFKHIPDSY"
     gene            437..1576
                     /locus_tag="ACFM6C_001660"
     CDS             437..1576
                     /locus_tag="ACFM6C_001660"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HFC6159090.1"
                     /translation="MSQNASVGIVTPQKIPFEVPLVLENGKTLPRFDLMIETYGELNA
                     EKNNAVLICHALSGNHHVAGKHSAEDKYTGWWDNMVGPGKPIDTERFFVVGLNNLGGC
                     DGSSGPLSINPETGREYGADFPVVTVKDWVKSQAALADYLGIEQWAAVIGGSLGGMQA
                     LQWTISYPERVRHALVIASAPKLSTQNIAFNDVARQAILTDPDFNEGHYRSRNTVPAR
                     GLRIARMMGHITYLAEDGLGKKFGRDLRSNGYQYGYGVEFEVESYLRYQGDKFVGRFD
                     ANTYLLMTKALDYFDPAADFGNSLTRAVQDVQAKFFVASFSTDWRFAPERSHELVKAL
                     IAAQKSVQYIEVKSAHGHDAFLMEDEAYMRAVAAYMNNVYKGCQQ"
     gene            1573..2154
                     /gene="metW"
                     /locus_tag="ACFM6C_001661"
     CDS             1573..2154
                     /gene="metW"
                     /locus_tag="ACFM6C_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine biosynthesis protein MetW"
                     /protein_id="HFC6159091.1"
                     /translation="MNLRDDLQLIYDRIPEGSRVLDLGCGDGELLAALVEHKKCSGYG
                     IEIDTDSVIAAMSRGVNVIQADLEEGLTAFNDQSFDVIVLSQTIQAMQNTEKILRCLM
                     RVAKQAIVSFPNFGYWRNRVQIALGGHMPVSERMPYHWYDTPNIHWCTLKDFDLLCAK
                     NNIRVLERAVMTGNRQVKHFPNLLGSLAFYRVG"
     gene            complement(2176..2282)
                     /locus_tag="ACFM6C_001662"
                     /pseudo
     CDS             complement(2176..2282)
                     /locus_tag="ACFM6C_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus and C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            2376..3212
                     /locus_tag="ACFM6C_001663"
     CDS             2376..3212
                     /locus_tag="ACFM6C_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NMB0938 family lipoprotein"
                     /protein_id="HFC6159092.1"
                     /translation="MKNTTSSLLLWLAAIMLAACSPSKNDKTKEVGASAASSSASSAS
                     SQTDLQPAASAPDNVKQAESAPPSNCTGLHPASGIDDLMQQIAEHIDSDCLFALSHHE
                     LETRFGLPGGGYDNIQRLLFPDIRPEDPDYHQKIILAIEDLRYGKRTISRQAQDALME
                     QERRLREATLLLIQGSQETRGQGEEPKRTRYFEVSATPAYSSRHNNGLGGNFQYIGQL
                     PGYLKIHGEMLENQSLFRLSNRERNPDKPFLDIHFDENGKITRIVVYEKNIYFNPNLG
                     RR"
     gene            complement(3262..3822)
                     /gene="efp"
                     /locus_tag="ACFM6C_001664"
     CDS             complement(3262..3822)
                     /gene="efp"
                     /locus_tag="ACFM6C_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HFC6159093.1"
                     /translation="MKTAQELRAGNVFMVGNDPMVVQKTEYIKGGRSSAKVSMKLKNL
                     LTGAASETIYKADDKFDVVILSRKNCTYSYFADPMYVFMDEEFNQYEIEADNIGDALK
                     FIVDGMEDQCEVTFYEGNPISVELPTIIVREVEYTEPAVKGDTSGKVMKTARLVGGTE
                     IQVMSYIENGDKIEIDTRTGEFRKRA"
     gene            complement(3865..5013)
                     /gene="earP"
                     /locus_tag="ACFM6C_001665"
     CDS             complement(3865..5013)
                     /gene="earP"
                     /locus_tag="ACFM6C_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0106361 - protein-arginine
                     rhamnosyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P maturation arginine
                     rhamnosyltransferase EarP"
                     /protein_id="HFC6159094.1"
                     /translation="MNTPPFVCWIFCKVIDNFGDIGVSWRLARVLHRELGWQVHLWTD
                     DVSALRALCPDLPDVPCVHQDIHVRTWYAEAADIDTAPVPDVVIETFACDLPENVLHI
                     IRRHKPLWLNWEYLSAEESNERLHLMPSPQEGVQKYFWFMGFSEKSGGLIRERDYCEA
                     VRFDSGALRKRLMLPEKNAPEWLLFGYRSDVWAKWLEMWRQAGSPMTLLLAGTQIIDS
                     LKQSGVIPQDALQNDGDVFQTASVRLVKIPFVPQQDFDKLLHLADCAVIRGEDSFVRA
                     QLAGKPFFWHIYPQDENVHLDKLHAFWDKAHGFYSPETASVHRRLSDDLNGGEALSAT
                     QRLECWQTLQQHQNGWRQGAEDWSRYLFEQPSAPEKLAAFVSKHQKIR"
     gene            complement(5032..5310)
                     /locus_tag="ACFM6C_001666"
     CDS             complement(5032..5310)
                     /locus_tag="ACFM6C_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159095.1"
                     /translation="MSRNLLVRWLVVCLIPLATLAVFAANPPEDKPQHLINGIILACE
                     ATFLFKFVLFDTIKHHLKQEFDLKRQTMLLFIPIILLIVYLFHYFGAF"
     gene            complement(5321..>5541)
                     /locus_tag="ACFM6C_001667"
     CDS             complement(5321..>5541)
                     /locus_tag="ACFM6C_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003699853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159096.1"
                     /translation="QTDAPGFQYARACCRLVLRHRRQRPIFRGTPVSGVFKGSAVRCF
                     PAARLQTASPVRPLDKACAWGDNGVLLF"
BASE COUNT         1382 a         1422 c         1456 g         1281 t
ORIGIN      
        1 acctcctacc gcaagccctt ttcatcaaat atgccgtctg aaacagaaaa atgcgtttca
       61 ggcggcattt tttccgtcaa tacgaatccg gaatgtgttt gaaatacagc atgaccaaat
      121 accaaaacag tgtcgcggcg gctgagccaa gcagtaccca tgcgctgatt ttggcgactt
      181 cgcacagggc gcgtttttgc ctgcggctga aaaggcgctt gataatcaac gcggcaagtg
      241 cgaaaaagaa aaaaatacgg aaaagtctgc ctatcatgtc gggaagctgg gttaggaccg
      301 tctgaaaaag tatggttcgg ttgcggcggc atgggaacga atgtttcggc gtgtcaggct
      361 gcttgtccga ccgtgtcaaa aaatcatgcc gtttgcgata taataacgct tttcgccgca
      421 tttgttggaa caggatatga gtcaaaatgc ctcggtgggc attgtaacgc cccaaaaaat
      481 tccgtttgag gtgccactgg ttttggaaaa cggtaaaact ttgccgcgtt tcgatctgat
      541 gattgaaacc tacggcgagc tgaatgctga aaaaaacaat gcggttttaa tctgccacgc
      601 gctgtcgggc aaccatcatg ttgcgggcaa acattcggcg gaggataaat atacgggctg
      661 gtgggacaat atggtcggtc ccggaaaacc gattgatacg gaacgttttt tcgtggtcgg
      721 tttgaataat ctgggcggct gcgacggcag cagcgggcct ttgtcgatta atcctgaaac
      781 gggcagggaa tacggcgcgg attttccggt ggttacggtg aaggactggg taaaatcaca
      841 agccgcgctt gccgattatc tcggcatcga acaatgggcg gcggttatcg gcggcagctt
      901 gggcggcatg caggctttgc agtggacgat ttcctatccc gaacgcgtgc gccacgcctt
      961 ggtgattgcg tccgcgccga agctttccac gcaaaatatc gcgttcaacg atgtggcgcg
     1021 tcaggcgatt ttgaccgatc ccgatttcaa cgaaggacat taccgcagcc gcaacaccgt
     1081 tcccgctcgg ggcttgcgga ttgcccgcat gatggggcac attacctatc ttgccgaaga
     1141 cggtttgggc aaaaaattcg gacgcgattt gcgttccaac ggctatcaat acggctatgg
     1201 cgttgaattt gaagtagaat cctatctgcg ctatcaaggc gacaaattcg tcgggcggtt
     1261 tgatgccaac acctatttgc tgatgaccaa ggctttggac tatttcgatc cggcggcgga
     1321 tttcggcaac agcctgaccc gcgccgtgca ggatgttcag gcaaaattct ttgtcgccag
     1381 cttcagcacc gactggcgtt tcgcgcccga acgttcgcac gaactggtca aggcactgat
     1441 tgccgcccaa aaatccgtgc agtatatcga agtcaaatcc gcacacgggc acgatgcctt
     1501 tttaatggaa gacgaagcct atatgcgtgc ggtcgccgcc tatatgaaca acgtttataa
     1561 gggatgtcag caatgaacct gcgcgatgat ttgcaactga tttacgaccg gatacccgaa
     1621 ggcagccgcg tcttggactt gggctgcggc gacggcgaac tgcttgccgc attggtcgaa
     1681 cacaaaaaat gcagcggcta cggcatcgaa atcgacaccg acagcgtgat tgccgcgatg
     1741 tcgcgcggcg tgaatgttat ccaagccgat ttggaagaag gtttaaccgc attcaacgat
     1801 caaagttttg atgtgattgt gttgagccaa accatccaag cgatgcagaa taccgaaaaa
     1861 atcctgcgct gcctgatgcg cgttgccaaa caggcgattg tcagcttccc gaatttcggc
     1921 tactggcgca accgcgtcca aatcgcactc ggcggacata tgccggtttc cgaacgtatg
     1981 ccctaccatt ggtatgatac gccgaacatc cattggtgta cgctcaaaga ctttgatttg
     2041 ttgtgcgcca aaaacaacat acgcgtcctc gagcgcgccg tgatgacggg caacagacag
     2101 gtcaaacatt tccccaacct tttgggcagc cttgcgtttt accgcgtcgg gtaagacagg
     2161 ttgagaacct tgttggtata gtggattaaa tttaaaccag tacggcgttg cctcgccttg
     2221 ccgtactatt tgtactgtct gcggctcgcc gccttgtcct agtttaaatt taatccacta
     2281 taataacgag gttcttccgt tgtactaaca agaagccgtc tgaaaaatga aacggtaggt
     2341 tttcagacgg cctctttaat attggaaaca atagaatgaa aaacacaacg tcatcacttc
     2401 tcttatggct tgccgcaatc atgctggccg cgtgttctcc gagcaaaaac gataaaacca
     2461 aagaagtcgg tgcatccgct gcttcgtcct ccgcgtcatc agcttcttcc caaaccgatt
     2521 tgcaaccggc cgcatccgcc cctgataacg tcaagcaggc agaaagcgcg ccgccgtcaa
     2581 attgcaccgg cctgcacccc gcctccggca ttgacgatct catgcagcaa atcgccgaac
     2641 acatcgactc ggactgtctg tttgcccttt cccatcacga actggaaacc cgtttcggct
     2701 tacccggcgg aggctatgac aacatacagc ggctgctgtt tcccgacatc cgccctgaag
     2761 atcccgacta ccatcagaaa atcatactgg caattgaaga cttgcgttac ggaaagcgca
     2821 cgatcagccg gcaggcacaa gatgccttga tggaacagga acgccgcctc cgagaagcga
     2881 cgctgttgct gatacagggc agtcaagaaa cccgcggaca aggcgaggag ccgaaacgca
     2941 cgcgttattt tgaagtttcg gcaacccctg cctattcgag ccggcacaac aacggacttg
     3001 gcggcaattt ccaatacatc ggccaattgc ccggctatct gaaaatacac ggagaaatgc
     3061 ttgaaaacca atcactcttc cggctgtcca accgtgaacg caatcccgac aaaccgtttt
     3121 tagacatcca ttttgacgaa aatggcaaaa tcacgcgtat tgtcgtttac gaaaaaaaca
     3181 tctacttcaa tccaaacttg gggcgaagat aaaaaaatgc cgtctgaaac gttttcagac
     3241 ggcatttttc aatgcaacaa atcaagcgcg tttgcggaat tcgccggtgc gggtatcgat
     3301 ttcgattttg tcgccgtttt cgatgtaaga catcacttgg atttcggtgc ccccgaccag
     3361 gcgcgcggtt ttcatcactt tgcctgaagt atcgcctttg acggcaggct cggtatactc
     3421 gacttcgcgt acgatgatgg tgggcagttc tacggagatg gggttgcctt cgtagaaggt
     3481 aacttcgcat tggtcttcca taccgtcaac gatgaatttc aacgcgtcgc cgatgttgtc
     3541 ggcttcgatt tcgtattggt tgaattcttc atccataaag acgtacatcg gatcggcaaa
     3601 gtagctgtac gtacagtttt tgcgggacag gatgaccacg tcgaatttgt cgtcggcttt
     3661 gtaaatggtt tcggaagccg cgccggtcag caggtttttc agtttcatgc tgactttggc
     3721 ggaagagcgg ccgcctttga tgtattcggt tttttgaacg accataggat cgttgccgac
     3781 cataaataca ttgccggcgc gcagttcttg tgctgttttc attgtgattt tccaatcaaa
     3841 tcggttgtcg taaaacgcgc tattctagcg tattttttga tgctttgaaa caaaggcagc
     3901 gagtttttca ggagctgacg gctgctcgaa aagataacgg ctccaatcct ccgcgccttg
     3961 ccgccagccg ttttgatgtt gttgcagggt ttgccaacat tcgaggcgtt gcgtggcgga
     4021 taaagcctct ccgccgttga ggtcgtctga aaggcggcgg tgtaccgatg cggtttcggg
     4081 cgagtaaaat ccatgcgcct tatcccaaaa ggcgtggagt ttatcgagat ggacattctc
     4141 gtcttgcggg tagatgtgcc aaaagaaggg tttgccggca agctgggcgc gcacgaaact
     4201 gtcttcgccg cgtatcacgg cgcagtcggc gaggtgcagc agtttgtcga agtcctgttg
     4261 cggcacgaaa gggattttga cgaggcggac ggatgccgtc tgaaaaacat cgccgtcgtt
     4321 ttgcagggca tcttgcggaa taacgccgct ttgtttgagg ctgtcgatga tttgcgtccc
     4381 cgccagcaac agtgtcatcg ggctgcctgc ctgtcgccac atttccagcc actttgccca
     4441 aacatcgctc cgatagccga aaagcagcca ttcgggggcg tttttttcgg gaagcatcag
     4501 cctcttgcgc aaggctccgc tatcgaaacg gacggcttcg cagtaatcgc gttcgcgtat
     4561 cagtccgccg cttttttcgc tgaagcccat aaaccaaaaa tatttttgaa caccttcctg
     4621 cggcgaaggc atcaggtgca gcctttcatt gctttcctcc gcgctcaaat attcccaatt
     4681 cagccaaagc ggcttgtgtc ggcggataat gtgcagcaca ttttcgggca ggtcgcaggc
     4741 aaaagtttcg atgacgacat cgggaacagg cgcggtatca atgtctgccg cttcggcata
     4801 ccaagtgcgg acatgaatat cctgatgaac gcagggaaca tcgggcaaat caggacaaag
     4861 cgcacgcaag gcggacacat cgtccgtcca caaatgcacc tgccaaccga gttcgcggtg
     4921 caaaacacgg gcaagccgcc acgaaacgcc gatgtcgccg aaattgtcga tgaccttgca
     4981 aaaaatccaa cagacaaaag gaggagtatt catagaaata acggaaacgg gctaaaacgc
     5041 gccaaaatag tggaacaaat acacaatcag caaaataatc ggaataaaca gcaacatagt
     5101 ttgacgtttc aaatcaaact cttgtttcaa atgatgcttg atggtgtcga aaaggacgaa
     5161 tttgaacaaa aacgtcgctt cgcaggcaag gatgatgccg ttaatcagat gctggggttt
     5221 gtcttcgggc ggattggcgg cgaaaacggc aagcgtcgcc aagggtatca ggcagacgac
     5281 aagccagcgg acaagcaggt ttcgggacat tgcaaggctt tcaaaaaagc aaaacgccat
     5341 tatcgcccca agcgcacgcc ttgtctaacg gacgcaccgg agatgccgtc tgaagccttg
     5401 ccgcaggaaa acaccgcacc gccgaacctt taaatacgcc cgagacgggc gttccccgaa
     5461 aaatcggacg ctgccgccga tgcctgagga caaggcggca gcaggcacgg gcatattgaa
     5521 aacccggcgc gtcggtttga a
//
LOCUS       DAXHPV010000133         5470 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.133, whole genome shotgun sequence.
ACCESSION   DAXHPV010000133 DAXHPV010000000
VERSION     DAXHPV010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5470)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5470)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5470
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.133"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(250..1509)
                     /gene="rho"
                     /locus_tag="ACFM6C_001668"
     CDS             complement(250..1509)
                     /gene="rho"
                     /locus_tag="ACFM6C_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003823056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HFC6159097.1"
                     /translation="MHVSELQTLHISKLLELAEEHGIENANRFRKQDLVFAIVRQMMK
                     KGEGFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVR
                     VPKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGR
                     AIDLISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTE
                     MSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNT
                     VVPTSGKILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEE
                     FKGTGNMELHLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPMDE
                     IEATEFLNGKIKASKNNDDFFELMRGK"
     gene            complement(1729..4113)
                     /gene="ppsA"
                     /locus_tag="ACFM6C_001669"
     CDS             complement(1729..4113)
                     /gene="ppsA"
                     /locus_tag="ACFM6C_001669"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008986 - pyruvate, water dikinase
                     activity [Evidence IEA];
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0006090 - pyruvate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HFC6159098.1"
                     /translation="MADNYVIWFENLRMTDVERVGGKNASLGEMISQLTEKGVRVPGG
                     FATTADAYRAFLAHNGLSERISAALAKLDVEDVAELARVGKEIRQWILDTPFPEQLDA
                     EIEAAWNKMVADAGGADISVAVRSSATAEDLPDASFAGQQETFLNINGLDNVKEAMHH
                     VFASLYNDRAISYRVHKGFEHDIVALSAGVQRMVRSDSGASGVMFTLDTESGYDQVVF
                     VTSSYGLGENVVQGAVNPDEFYVFKPTLKAGKPAILRKTMGSKHIKMIFTDKAEAGKS
                     VTNVDVPEEDRNRFSITDEEITELAHYALTIEKHYGRPMDIEWGRDGLDGKLYILQAR
                     PETVKSQEEGSRNLRRFAINGDKTVLCEGRAIGQKVGQGKVRLIKDASEMDSVEAGDV
                     LVTDMTDPDWEPVMKRASAIVTNRGGRTCHAAIIARELGIPAVVGCGNATELLKNGQE
                     VTVSCAEGDTGFIYSGLLDVQITDVALDNMPKAPVKVMMNVGNPELAFSFANLPSEGI
                     GLARMEFIINRQIGIHPKALLEFDKQDDELKAEITRRIAGYASPVDFYVDKIAEGVAT
                     LAASVYPRKTIVRMSDFKSNEYANLVGGNVYEPHEENPMLGFRGAARYVADNFKDCFA
                     LECKALKRVRDEMGLTNVEIMIPFVRTLGEAEAVVKALKENGLERGKNGLRLIMMCEL
                     PSNAVLAEQFLQYFDGFSIGSNDMTQLTLGLDRDSGLVSESFDERNPAVKVMLHLAIS
                     ACRKQNKYVGICGQGPSDHPDFAKWLVEEGIESVSLNPDTVIETWLYLANELNK"
     gene            4524..5345
                     /locus_tag="ACFM6C_001670"
     CDS             4524..5345
                     /locus_tag="ACFM6C_001670"
                     /EC_number="2.7.11.33"
                     /EC_number="2.7.4.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate, water dikinase regulatory protein"
                     /protein_id="HFC6159099.1"
                     /translation="MSSPRHVFYISDRTGLTAENIGEALLNQFGNLSFKRHTHPFVDT
                     PEKARAVVEKVNRSRQENGQRPIAFVSVVDDEIRRIIKGADAFQINFFETFLGLLEKE
                     LNTEATASEQGHHSIGNTKRYDARMEAVNFSLNHDDGVSDKNLQEADVILMGVSRSGK
                     TPTCLYLALQYGIRAANYPLIPDDLESADLPRMVKPYRDKLFGLTIQPERLQAIRQER
                     RPNSTYAKIDTCRSEVADAQSMFRRHGIPFANTTDKSVEELAVHILQACKLKRRF"
BASE COUNT         1164 a         1281 c         1600 g         1425 t
ORIGIN      
        1 ttatacaaaa atgagcgcgg ttcggcgcaa ccttgaatca agttcccgca tcggttttca
       61 ttgccggtac ggatgcgttc aagccggctt tgcaaaggcc gcgctttcgg caagcggaca
      121 cggacactgc cgacggttgc gccgttaacg gggggaggga ggagctgcgc cgaccgtgtg
      181 aatgaaagtg ccgtctgaaa cccgattttc aggcttcaga cggcatttcg cctaatgtcg
      241 atgatgtgtt tattttccgc gcatcagttc aaagaaatca tcattgtttt tagaggcttt
      301 gattttcccg tttaagaact cggtagcttc gatttcatcc atcgggtgca ggaacttgcg
      361 taagagccac atacgttgca actggtcgtt cggcacaagc agctcttcgc ggcgcgtgcc
      421 ggatttgttg atgttgatgg cggggaagag gcgtttttcc gccatacggc gatcaaggtg
      481 caattccata ttgccggtgc ctttgaattc ttcgtaaatc acatcgtcca tacggctgcc
      541 ggtttcaacc aatgcggtgg cgataatggt cagcgaaccg ccttcttcca cgttgcgcgc
      601 cgcaccgaag aaacgtttgg ggcggtgcag cgcgttggca tcgacaccgc cggtcaggat
      661 tttgcccgag gtggggacga cggtattgta ggcgcgggca aggcgggtaa tcgaatccag
      721 caggatgacc acgtcttttt tgtgttccac catacgcttg gctttttcaa gcaccatttc
      781 ggcaacttgg acgtggcgtt gagccggctc gtcaaaggtg gaggagacta cttcgccacg
      841 gacggagcgg ctcatttcgg ttacttcttc gggacgctcg tcaatcaaga ggacgatgag
      901 ttcgacttcg ggatagtttg cggtaacggc gtgggcaata ttttgcagca tcacggtttt
      961 accgcttttg ggcggggcaa ccaagagggc gcgctgacct ttgccgatgg gggaaatcag
     1021 gtcgatggcg cgtccggtca ggttttcttc ggactttaag tcgcgttcca gcttcaactg
     1081 ttcggtcgga aacagcgggg tcaggttttc aaacaggatt ttatggcggc atacttccgg
     1141 gtggtcgccg ttgatggtat caagcctgac cagggcaaaa tagcgttcgt tgtcttttgg
     1201 gacgcgcacg cttccttcga tggtgtcgcc cgtatgcagg ttgaagcggc ggatttgggt
     1261 gggcgagaca tagatgtcgt cggggccggc aagataggac gtgtccgcgc tgcggaggaa
     1321 gccgaagccg tcgggcagga tttcaagcgt gccggagcag gtgaaaccct cgcctttttt
     1381 catcatctgg cggacgatgg caaatacgag gtcttgtttg cggaatcggt tggcgttttc
     1441 gatgccgtgt tcttccgcca attctaagag tttggaaatg tgcagggttt gtaattcgga
     1501 gacgtgcata ataatgatgt attttgaaga ggaaaaagac aggcagatgc cgtctgaaag
     1561 aagaagctga ccgttgccgg ttgctcgggg aagggggaat tgtaggcagt cggcgcgtgg
     1621 gtgtcaaata ttatcgcgga cggggcatcg gcaggaaatg ccgtctgagc ggagctgctt
     1681 ggaaaaaaat acccccgcgc ttttcaggct cgggggtatg ggcattgatt atttgttcaa
     1741 ttcattcgcc aaatatagcc aagtttcgat gacggtatcc gggttcaggg aaacgctttc
     1801 aatgccttcc tcaaccagcc atttggcgaa gtccggatgg tcggacgggc cttgaccgca
     1861 gatgccgaca tatttgttct gcttgcggca ggcggagatg gcaagatgca gcatcacttt
     1921 gacggcaggg ttgcgttcgt caaacgattc ggataccaag ccgctgtcgc ggtcaagacc
     1981 gagggtcagt tgggtcatgt cgttcgagcc gatggagaag ccgtcgaagt attgcaggaa
     2041 ttgttccgcc aataccgcgt tgctcggcag ctcgcacatc ataatcaggc gcaggccgtt
     2101 tttgccgcgt tccaagccgt tttctttcag ggctttgaca acggcttcgg cttcgcccaa
     2161 agtgcggacg aacggaatca tgatttcaac gttggtcaga cccatttcgt cacgaacgcg
     2221 tttcaaggct ttgcattcca aggcgaaaca gtctttgaag ttgtcggcga cataacgcgc
     2281 cgcgccccgg aagcccaaca tcgggttttc ttcatgcggt tcgtatacgt tgccgccgac
     2341 taggttggcg tattcgttgg atttgaagtc ggacatacgg acgatggttt tacgcggata
     2401 aaccgatgcg gccaatgtcg ccacgccttc ggcgatttta tcgacgtaga agtcgacagg
     2461 ggacgcgtaa ccggcgatac ggcgggtaat ttccgctttt aattcgtcgt cttgtttgtc
     2521 aaattccaac aaggctttgg ggtggatacc gatttggcgg ttgatgataa attccatacg
     2581 cgccaagccg atgccttcgc tgggcaggtt ggcgaagctg aatgcgagtt cgggattgcc
     2641 gacgttcatc atgactttta caggtgcttt gggcatgttg tccaaagcaa catcggtaat
     2701 ttgtacgtcc agcaggccgg agtagatgaa gccggtatcg ccttcggcac aggatacggt
     2761 aacttcttga ccgtttttca gcaattcggt tgcattgccg cagccgacaa cggcaggaat
     2821 acccagttcg cgcgcgatga tggcggcgtg gcaggtacgt ccgcccctgt tggtcacgat
     2881 ggcggaagcg cgtttcatca ccggttccca atccgggtcg gtcatgtcgg taacgagtac
     2941 gtcgccggct tcgacggaat ccatctcgga agcatcttta atcaggcgta ctttgccctg
     3001 tccgactttc tgaccgatgg cgcggccttc gcataatacg gttttgtcgc cgttgatggc
     3061 gaagcggcgc aggttgcggc tgccttcttc ctgggatttg acggtttcgg gacgggcttg
     3121 caggatgtag agtttgccgt ccaagccgtc gcgtccccat tcgatatcca tcgggcggcc
     3181 gtagtgtttt tcgatggtca gtgcgtaatg cgccaactcg gtgatttctt cgtcggtaat
     3241 ggagaagcgg ttgcggtctt cttcggggac atcgacgttg gttaccgatt tgccggcttc
     3301 ggctttgtcg gtaaaaatca ttttgatgtg tttcgaaccc atggttttac gcaggatggc
     3361 gggcttgccc gctttgagcg tgggtttgaa cacataaaat tcgtccgggt tgaccgcgcc
     3421 ttgtacgacg ttttcgccca gaccgtaaga ggaggtaaca aagacgactt gatcgtagcc
     3481 ggattcggtg tcgagggtga acatcacacc tgatgcgccg ctgtcggaac gcaccatgcg
     3541 ttgtacgccg gcggaaaggg cgacgatgtc gtgttcgaag cctttgtgga cacggtaaga
     3601 aatggcacgg tcgttataca gggaagcgaa tacatggtgc atcgcttctt taacgttatc
     3661 caagccgttg atgttcaaga aggtttcctg ttgtccagcg aatgatgcgt ctggcaggtc
     3721 ttcggcagtt gcggaagaac gtacggcaac ggaaatgtcc gcaccgccgg catcggcaac
     3781 cattttgttc catgccgctt cgatttcggc atcgagctgt tcagggaaag gcgtgtccaa
     3841 aatccattgg cggatttctt tgccgacgcg tgccagttcg gcaacgtctt cgacatccaa
     3901 ttttgccagt gcggcggaaa tgcgttcgct cagaccgttg tgtgcgagga atgcgcggta
     3961 ggcatcggct gtggtggcaa agccgccggg gacgcgaacg cctttttcgg tcagctgact
     4021 gatcatttcg cccagcgagg cgtttttacc gcccacgcgt tcaacatctg tcatacgcag
     4081 gttttcaaac cagattacgt agttgtcggc catttgtgtg tccaatccaa aatatgttaa
     4141 aaaagaaaca aatccgcgtg cttattttaa gcgattcgtt cctctgctgt catgtgtttt
     4201 atccgtttta aaatcatgat gccgtctgaa aaattgcggt ttcggcgtgt gtagcggttt
     4261 gaaacttgca gccggtatac ttcttttttt gggtattttc tttgtaaaac aggtggtttg
     4321 aataggttaa tgttttttct gtttgatttt tttgtttatt ttttaaaatt ttctgccaaa
     4381 aaagacttta tataaataat tttatttcaa aattatattg tgtctgtttg ggtgtaatcc
     4441 gaggtaggcg tgctgcgggt gctttccttg tgtctgccgc tgctgttatg atgatatttt
     4501 tattctgtat ttaaggatgg aagatgagca gtccgcgcca tgtgttttac atttccgacc
     4561 gtaccggtct gactgccgag aatatcggcg aggctttgct gaaccagttt ggcaatctgt
     4621 cgttcaaacg ccatacgcat ccgtttgtcg atacgccgga aaaggcgcgc gcggtggtgg
     4681 agaaggtcaa tcggagccgg caggaaaacg gtcagcgtcc gattgcgttt gtcagtgtgg
     4741 ttgatgacga aatccgtcgg attatcaaag gggcggatgc ttttcagatt aatttctttg
     4801 agactttttt gggactgttg gagaaagaac tcaataccga agccacggca tccgagcagg
     4861 ggcatcacag tatcggtaat acgaagcgtt acgatgcgcg tatggaggcg gtgaatttct
     4921 cattgaacca cgatgacggg gtcagcgata agaaccttca ggaagcggat gtaatcttga
     4981 tgggtgtatc gcgttcgggc aaaacgccga cctgccttta cctcgccctg caatacggca
     5041 tccgtgcggc aaactatccg ctgattcccg acgatttgga atcggccgat ctgccgcgta
     5101 tggtcaagcc ttatagggat aagctgttcg ggttgaccat ccagccggaa cgtttgcagg
     5161 ccatccgcca agagcgccgc ccgaattcaa cttatgccaa aatcgataca tgccgcagcg
     5221 aggtggcaga cgcgcagagt atgttcagac ggcatggcat tccgtttgcg aatacgacgg
     5281 ataaatcagt ggaagagctt gccgtacaca tccttcaggc gtgcaagctc aaacgcaggt
     5341 tttgacgggc tttgattcgg tttgaaggcg gaaatgccgt ctgaaatcag gtttcagacg
     5401 gcagttttat agtggattaa caaaaatcag gacaaggcga cgaagccgca gacagtacaa
     5461 atagtacgga
//
LOCUS       DAXHPV010000134         5458 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.134, whole genome shotgun sequence.
ACCESSION   DAXHPV010000134 DAXHPV010000000
VERSION     DAXHPV010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5458)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5458)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5458
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.134"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            294..1727
                     /locus_tag="ACFM6C_001671"
     CDS             294..1727
                     /locus_tag="ACFM6C_001671"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HFC6159100.1"
                     /translation="MNEYSQLIKHPDISLPPVSDGIKVDNPATGETLAFVRKTDSDKL
                     KNLIQKAAAAQKLWAAKTALERADVLWRWYFLIKENKEALARLMTMEQGKGLTEARGE
                     IDYAASFVRWFAEEARRIDGDVLTSVKASQKLVVLKQPVGVTAAITPWNFPSAMIARK
                     AAPALAVGCAMIVKPASLTPLSAYALAVLAYEAGVPQDLLPVVSGSASEIGREFATNP
                     IIRKISFTGSTEVGAKIFADSAADIKKLSLELGGNAPFIVFDDADLDKAVEGALASKF
                     RNSGQTCVCTNRVYAQSGIYDAFCRKLSEKAAVLKLGNGLDEGVNQGPLIEEKAVEKV
                     EQHIADALSKGAVCLTGGKRSALGGTFFEPTVLSGVTAQMAVAREETFGPLCPVFRFE
                     TEAEVIAVANDTEYGLAAYLFTADTARQWRVGEALEYGMVGINTGLISNEVAPFGGVK
                     RSGLGREGSKYGADEYLELKYLCLDVG"
     gene            1971..2759
                     /locus_tag="ACFM6C_001672"
     CDS             1971..2759
                     /locus_tag="ACFM6C_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimb protein"
                     /protein_id="HFC6159101.1"
                     /translation="MMENGKTVPRWRFALKSAGWHLLISLSVAGLAALLVFKVWYPYP
                     YAELTGGLSLYQLVVAVDIVCGPLLTLILASPKKKTKARMVDFSMVGIIQLAALAYGL
                     HSVSLARPVIEAFEKDRINIVTAAEVAVEDLHKAPEGLQSLSWFGIRRIALKEPEDAD
                     EKNKTLDLSLKGIEPSMRPDRWLPYSDKEAEEIRKHLKPLKVLADARKTTVADILKQA
                     GLAEGEELYYLPFTSSRQKEWIVITDKEGNTKGYAPIDGFIITP"
     gene            3127..4683
                     /locus_tag="ACFM6C_001673"
     CDS             3127..4683
                     /locus_tag="ACFM6C_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter associated domain-containing
                     protein"
                     /protein_id="HFC6159102.1"
                     /translation="MDFSWLAEPHTWIGFATLLVLEVVLGIDNLVFVAILANKVQPAR
                     RDRARIIGLGLAVVIRIIMLAFMAHIITLTEPLFQIGGLAVSGKDMIMLAGGIFLLYK
                     ATTELHERLEGHNRFTVADNQKKHAPFWGVVAQILILDAVFSIDSVITAVAMVDHIVV
                     AMGAVVVAMAVMISASKLLTEFVDRHPTVVMLCLGFLLMIGFSLIAEAFHFHIPKGYL
                     YAAIGFSILIELFNQISQRNSRKNDYIGSSWRKRTAENVLGMMGIRESVLADAGGESG
                     DDAHFEENEKSMIRSVLTLAERPIMGVMIPRRDIERLDISQSREEQCAQLQNTPYSRL
                     LVVGKAGVDEPLGYINKKDLLSQLLETGGLDIQTALRQPLVLPDSTTALGAIELFRQS
                     SADYALVVDEFGAVLGMVTMKDLLETIAGEFPEEFEREEEPAVQGNPDESLTVEGALE
                     YVELASQLNLPQQEEDADFHTVAGLIMEELQTIPDVGDFADFHGWRFEVVEKEGQRIE
                     RVKITKLPEE"
     gene            4700..5446
                     /gene="surE"
                     /locus_tag="ACFM6C_001674"
     CDS             4700..5446
                     /gene="surE"
                     /locus_tag="ACFM6C_001674"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HFC6159103.1"
                     /translation="MNVLISNDDGYLSEGIAVLARVTAEFANVRVVAPERDRSGVSNS
                     LTLERPLQLKQAQNGFYYVNGTPTDCIHIGQSVFSDFQADFVFSGINRGANMGDDTLY
                     SGTVAAATEAYLMGIPAVAFSLNDASGRYWATAEQALWTLLAHFFKNPPQSPILWNIN
                     IPAVAPEDVRGIKIARLGRRHHGQNVIPARNPRGEQIYWIGPVGEVSDREEGTDFGEC
                     GAGFITVTPLQIDLTAYPDMAETAAFWHTD"
BASE COUNT         1275 a         1369 c         1546 g         1268 t
ORIGIN      
        1 tttggatttt tgccatactc taccacacgt tgcaactgca atctttgttc cttatatatt
       61 attaaagggc tgcattactt ttctttctaa attaccattg tataaaaagt atttttctta
      121 aacgacaggg attgcgcccg cgccatattc agacaccgcc cggatgttgc gctgcccgat
      181 cggatgcttc agacggcatc ggaagggttt gcagttttgg aatatgaaga tgataatgtc
      241 cgcgagattg acggcatttg aaagcggtta ttccgcatac cggaggatac gaaatgaacg
      301 aatattccca attaatcaag catcccgata tttcccttcc cccggtttca gacggcatca
      361 aagtcgataa tccggcaacg ggcgagactt tggcgtttgt ccgcaagacg gattcggaca
      421 agctgaaaaa cctgattcaa aaggcggcgg cagcgcaaaa attatgggcg gcaaaaaccg
      481 cgttggaacg cgccgatgtg ttgtggcgtt ggtatttttt gataaaggaa aacaaagaag
      541 cactggcgcg tctcatgacg atggagcagg gcaaaggcct gaccgaggcg cgcggcgaaa
      601 tcgattatgc ggcttcgttt gtgcgctggt ttgccgaaga ggcgcggcgg attgacggcg
      661 atgtgctgac gagtgtgaaa gcgtcgcaaa aactggtcgt gttgaaacag cctgtcggtg
      721 ttaccgccgc gattacgccg tggaactttc cgtccgcgat gattgcgcgc aaggctgcgc
      781 cagctttggc agtgggttgc gcgatgatcg tcaaacccgc gtcgctcacg cctttgagcg
      841 cgtatgcgtt ggccgtgttg gcttacgaag cgggcgtgcc gcaggatttg ctgcctgttg
      901 tcagcggcag tgcttcggaa atcggccgtg aatttgccac gaacccgatt atccgcaaaa
      961 tcagcttcac cggttcgacc gaagtcggcg cgaaaatttt tgccgacagc gcggcggaca
     1021 ttaaaaaact cagtttggaa ctgggcggca atgcgccgtt tatcgtgttt gacgatgccg
     1081 atttggacaa agccgtcgaa ggcgcgctcg ccagcaagtt ccgcaacagc ggtcagacct
     1141 gtgtctgcac caaccgcgtt tacgctcaat cgggcattta cgacgcattt tgccgcaaat
     1201 taagtgaaaa agcagccgtg ctcaaattgg gcaacggctt ggacgaaggc gtgaaccaag
     1261 ggccgctgat tgaggaaaaa gcggtagaaa aagtcgagca gcacatcgcc gacgcactct
     1321 caaaaggcgc ggtctgtctg accggcggca aacgcagcgc gttgggcgga acgttttttg
     1381 agccgactgt cttaagcggc gtaacagcac aaatggcggt ggcgcgcgag gaaaccttcg
     1441 ggccgttgtg tccagtgttc cgttttgaaa ccgaagccga agtcatcgcg gtcgccaacg
     1501 atacggaata cggtttggca gcttaccttt tcaccgccga caccgcccgc caatggcgcg
     1561 tcggcgaagc attggaatac ggtatggtcg gcatcaatac gggcttaatc agtaatgaag
     1621 tggcaccgtt cggcggcgtg aaacgcagcg gtttgggacg tgaaggcagc aaatatggtg
     1681 cggacgaata tctagaattg aaatatttgt gtcttgatgt cgggtagagt atatatttga
     1741 tttatatgca aaaagttttt gggtatgtaa atctgataga ttcacatacc ccaacttata
     1801 ccccaattta tttgaagttg gtttgaagcc agtttgctac ggcttcttcg ttccaccggc
     1861 tgctcctgcc gtctgaacgg cagggtttca gacggcgccg cattttaagc agtctctatc
     1921 tgttgtacaa tgcgccctgt ttttacggtt atttttgatt tgaacaagat atgatggaaa
     1981 acggaaaaac agtcccgaga tggcgttttg ccttgaaaag tgcgggctgg cacctcttaa
     2041 tcagcctgtc ggttgcaggg ctggcggcat tgctggtttt taaggtttgg tatccttatc
     2101 cttatgccga gctgacggga gggctgtcgc tttatcagct ggtggtggct gtcgatattg
     2161 tatgcggtcc gctgctgact ttaattttgg caagcccgaa gaaaaagaca aaggcacgca
     2221 tggtcgattt ttccatggtc ggcatcatcc agctggcggc tttggcgtac ggtctgcaca
     2281 gcgtttcgct ggcgcgccct gtgatagagg cgtttgaaaa agacaggatt aatattgtaa
     2341 ccgccgccga agtggcggtt gaagatttgc acaaagcgcc ggaagggctg caaagcctgt
     2401 cgtggttcgg catccgccgc attgcattga aagaacctga ggatgcggat gagaagaaca
     2461 agacgctgga tttgtccctg aaaggtatcg agccgagtat gcgtcccgac cggtggctgc
     2521 cgtattccga caaggaagca gaagaaatcc gcaaacattt gaaaccgctg aaagtcttgg
     2581 cggatgcgag aaaaacgacg gttgcggaca ttctgaaaca ggcaggtctc gccgaagggg
     2641 aggagctgta ttacctgccg tttaccagca gcaggcagaa agagtggata gtcattaccg
     2701 ataaagaggg caacaccaaa ggctacgcgc cgatagacgg cttcatcatc accccttaag
     2761 cgttgggact ccgtccgcac tcgaacatcc gttcttcgcg gcggtagaat cagactgtat
     2821 ttgagagggg cgcaacccct caatcagggc aacacatagg ggaaggcttt atgtgccgtc
     2881 cgtgtgttga aacatttcaa aataagctca tgccgtccga acatcctttc agacggtatg
     2941 gcgttttgcc attgccccga taagctgtta aactatttaa attatttcga ccgaaggtac
     3001 acgcacatgc aagaccccga gcagagcagc aagcccgccc gctgtttttt gtgcgtaccg
     3061 tctgttcagg cagcttgagc gcttcaggct gccttttcgc gtttgaactt gaggaatacg
     3121 aaaatcatgg atttcagttg gttggcagaa ccgcatacct ggataggttt tgccacgctt
     3181 ttggtgttgg aagtcgtatt ggggatagac aatcttgtct ttgtggcgat tttggcaaac
     3241 aaggtccagc ccgcacggcg cgaccgcgca cggattatcg ggctggggct ggcagtcgtc
     3301 atccgcatca ttatgcttgc ttttatggcg cacatcatca cgctgaccga gccgctgttc
     3361 caaatcggcg gcctcgccgt ttccggcaag gacatgatta tgctcgcggg cggtattttc
     3421 ctgctttaca aagccaccac cgaactgcat gaacgcctcg aagggcacaa ccgttttacc
     3481 gttgccgaca accaaaaaaa acacgcgccg ttttggggcg tggtcgcgca aatcctgata
     3541 ctggatgccg tgttttccat cgattcggtc attactgcgg tggcgatggt cgatcatatc
     3601 gtcgtggcga tgggtgcggt cgtcgtcgcg atggctgtaa tgatttctgc cagcaaactc
     3661 ttgaccgaat ttgtcgacag acaccctacc gtcgtgatgc tctgccttgg ttttttgttg
     3721 atgatcggtt tcagcctgat tgccgaagcc ttccatttcc acattcccaa aggctacctc
     3781 tacgccgcca tcggcttctc gattttaatc gaactgttta accagatttc ccagcgcaac
     3841 agccgcaaaa acgactacat cggcagctcg tggcgcaagc gcaccgccga aaacgttttg
     3901 ggtatgatgg gcatacgcga aagcgtgctt gccgatgcgg gcggcgaatc cggggacgac
     3961 gcgcattttg aagaaaacga aaaatcgatg atacgcagcg tgctgacgct tgccgaacgc
     4021 ccgattatgg gggtgatgat cccacgccgc gacatcgaac ggctggacat ttcccaaagc
     4081 cgcgaagaac agtgtgccca actgcaaaat acgccttaca gccgcctgct cgttgtcggt
     4141 aaggcgggcg tggacgaacc tttgggctac atcaacaaaa aagacctgct gtcccaactg
     4201 ctggaaacag gcggtctcga cattcagacg gcattgcgcc agccactcgt cctgcccgac
     4261 agcaccaccg cgctgggcgc aatcgaactc ttccgccaaa gcagcgcgga ttatgctttg
     4321 gtggtggacg agttcggcgc ggtattgggc atggtaacca tgaaagacct gctcgaaacc
     4381 atcgcaggcg agttccccga agaatttgag cgcgaagaag aaccagccgt tcaggggaat
     4441 cccgatgaaa gcctgacggt ggaaggcgcg ttggaatatg tggagctggc atcccaactc
     4501 aatctgccgc agcaggagga agatgccgat ttccatacgg ttgccgggct gattatggaa
     4561 gaattgcaaa ccatccccga tgtcggcgat tttgccgatt tccacggctg gcggtttgaa
     4621 gtggtcgaaa aagaagggca gcgcatcgag cgggtcaaaa tcaccaaatt gcccgaagaa
     4681 taagcattca ggatagaaaa tgaacgtttt gatttccaac gacgacggct acctctccga
     4741 aggtattgcc gttttggcgc gcgttacggc ggaatttgcc aacgtcaggg tggttgcgcc
     4801 cgaacgcgac aggagcgggg tcagcaattc gctgacgctg gaacgccctt tgcagttgaa
     4861 acaggcgcaa aacgggttct actatgtcaa cggcacgccg accgactgta tccacatcgg
     4921 gcagtctgta ttttcggatt ttcaggccga ttttgtcttt tcgggcatca accggggcgc
     4981 gaatatgggg gacgacacgc tttattcggg gacggttgcg gcggcaaccg aagcctacct
     5041 tatgggcata cccgctgtgg cgttttcctt aaacgacgct tccggacgct attgggcgac
     5101 cgcagaacag gcactgtgga cattgttggc gcattttttc aaaaaccccc cgcagtcccc
     5161 tattttgtgg aacatcaata tccccgccgt tgcgccggaa gatgtgcggg gcattaaaat
     5221 cgcccgtttg ggcaggaggc atcacggtca gaacgtcatc cccgcgcgca atccgcgcgg
     5281 cgaacagatt tattggatag ggccggtcgg cgaagtttcc gatcgggaag agggaacgga
     5341 tttcggtgaa tgcggcgcag gtttcattac cgtaacgccg ttgcaaatcg acctgaccgc
     5401 ctatccggac atggcggaaa cggcggcgtt ctggcatacg gactgaccgt ttcatcaa
//
LOCUS       DAXHPV010000135         5376 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.135, whole genome shotgun sequence.
ACCESSION   DAXHPV010000135 DAXHPV010000000
VERSION     DAXHPV010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5376
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.135"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(218..3049)
                     /gene="lbpA"
                     /locus_tag="ACFM6C_001675"
                     /gene_synonym="tbpA"
     CDS             complement(218..3049)
                     /gene="lbpA"
                     /locus_tag="ACFM6C_001675"
                     /gene_synonym="tbpA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoferrin/transferrin-binding protein LbpA"
                     /protein_id="HFC6159104.1"
                     /translation="MNKKHGFQLTLTALAVATAFPAYAAQAGGATPDAAQTQSLKEVT
                     VRAAKVGRRSKEATGLGKIVKTSETLNKEQVLGIRDLTRYDPGVAVVEQGNGASGGYS
                     IRGVDKNRVAVSVDGVAQIQAFTVQGSLSGYGGRGGSGAINEIEYENISTVEIDKGAG
                     SSDHGSGALGGAVAFRTKEAADLISDGKSWGIQAKTAYGSKNRQFMKSLGAGFSKDGW
                     EGLLIRTERQGRETRPHGDIADGVEYGIDRLDAFRQTYDIQKQNKKAEYFLAEGEREP
                     KPVAKLAGNGNYLKNQLNRWVKERIEQNQPLSAEEEAMVREAQARHENLSAQAYTGGG
                     RILPDPMDYRSGSWLAKLGYRFGGRHYVGGVFEDTKQRYDIRDMTEKQYYGTDESKKF
                     SDKSGVYDGDDFRDGLYFVPNIEEWKGDKNLVKGIGLKYSRTKFIDEHHRRRRMGLLY
                     RYENEKYSDNWADKAVLSFDKQGVATDNNTLKLNCAVYPAVDKSCRASADKPYSYDSS
                     DRFHYREQHNVLNASFEKSLKNKWTKHHLTLGFGYDASKAISRPEQLSHNAARISEYS
                     DYTDKGDKYLLGKPEVVEGSVCGYIETLRSRKCVPRKINGSNIHISLNDRFSIGKYFD
                     FSLGGRYDRQNFTTSEELVRSGRYVDRSWNSGIVFKPNRHFSVSYRASSGFRTPSFQE
                     LFGIDIYHDYPKGWQRPALKSEKAANREIGLQWKGDFGFLEISSFRNRYTDMIAVADQ
                     KTKLPDSAGRLTEIDIRDYYNAQNMSLQGINILGKIDWNGVYHKLPEGLYTTLAYNRI
                     KPKSVSNRPGLSLRSYALDAVQPSRYVLGFGYDQPEGKWGANIMLTYSKGKNPDELAY
                     LAGDQKRYSTKRASSSWSTADVSAYLNLKKRLTLRAAIYNIGNYRYVTWESLRQTAES
                     TANRHGGDSNYGRYAAPGRNFSLALEMKF"
     gene            complement(3046..5244)
                     /locus_tag="ACFM6C_001676"
     CDS             complement(3046..5244)
                     /locus_tag="ACFM6C_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HFC6159105.1"
                     /translation="MCKPNYGGIVLLPLLLASCIGGNFGVQPVVESTPTAYPVTFKSK
                     DVPTPPPAGPSIETTPVNRPAVGAAMRLLRRNIATSDKDGNDFPNSRQAEEKLSFKEG
                     DVLFLYGSKKDQRQQLEDEIRQRNPNVQIRTSENENKKYGYNFVDAGYVYVKGEDEIE
                     RTSNYKYFTHRFGYDGFVYYSGEHPSQSLPSAGTVKYFGNWQYMTDAIRHRTGKAGDP
                     SEDLGYLVYYGQNVGATSYAATADDREGEGKHPAEYTVDFDKKILEGKLIKNQYVQRK
                     TDKKNPLVIYDITAKLDGNRFTGSASVNPELKKSHSDKEYLFFHDNADQRLEGGFFGD
                     NGEELAGRFISNDKSVFGVFAGKQKTNASGTNPAMPSRKHTKILDSLKISVDEASGEN
                     PRPFEVSTMPDFGHPDKLLVEGREISLVNQEQIIQLADGRKMTVRACCDFLTYVKLGR
                     IKTERPASKPKAEDKREDEESAGVGNVEEGEGEVSEDEGEEAEEIVEEEPEEEAEEEE
                     AEPEEAEEESPTEESGSGSNAILPTPEAPKGRDIDLFLKGIRTAEADIPKNGTAHYTG
                     TWEARISTPIQWDNQADKTAKAEFNVDFGKKSISGTLTEKNGVEAAFHIENGVIEGNG
                     FHATARTRDNGINLSGTGSTNPKTFQASDLRVEGGFYGPQAAELGGTIFNKDGKSLGI
                     TEGTENKVEVEAEVEVEAETGVVEQLEPDEVKHQFGVVFGAKKDNKEVEK"
BASE COUNT         1148 a         1436 c         1253 g         1539 t
ORIGIN      
        1 ccgctctgcc gccattccca caaaagtggg aatccagttt ttcgagtttc agtcattccc
       61 gataaattgc cttagcattg aatgtctaga ttcccgcctg cgcgggaatg acgacggaaa
      121 tcttgtttat attgaatcaa aaaaacctgc accttaatca gttggcggtt tagtccgact
      181 tttggggtgc agatcaagct ttcagacggt atttccttta aaacttcatt tcgagcgcga
      241 ggctgaagtt cctgcccggt gcggcatacc ttccatagtt gctgtcgccg ccgtgccggt
      301 ttgccgtgct ttccgcggtc tggcgcaagg attcccaagt aacgtagcgg tagttgccga
      361 tattgtagat agccgccctc aaggtcagcc gttttttcag attcagatag gcggaaacgt
      421 ctgccgtcga ccaagaagac gacgctcttt ttgtcgaata tcgtttttga tcgcctgcca
      481 gataagcaag ctcgtcaggg tttttccctt tggaataggt cagcataatg tttgcccccc
      541 atttcccctc aggctggtcg tatccgaacc ccaaaacata acgcgacggc tgtaccgcat
      601 ccaaagcata gctgcggagg gatagtcccg gccgattgga taccgatttc ggtttgatgc
      661 ggttgtacgc caaagtcgtg tacaaacctt cgggcagttt gtgatacacg ccgttccagt
      721 cgatttttcc caagatgttg atgccttgga gcgacatatt ttgggcattg taataatcgc
      781 gtatatcaat ctctgtcaat cgtcctgccg aatccggcaa tttggttttt tgatcggcaa
      841 cggcgatcat atcggtatag cggttgcgga agctgctgat ttccaaaaag ccgaagtcgc
      901 ccttccactg caaaccgatt tcgcggttgg ctgccttttc cgatttcagg gcgggacgct
      961 gccagccttt cggataatcg tgataaatgt ctatcccgaa aagctcttgg aaggaaggcg
     1021 ttctgaagcc gctggaggcg cggtaagaca cggaaaaatg ccggttcggt ttgaacacga
     1081 tgccgctgtt ccacgaacgg tcaacatacc gcccgctgcg gacgagttct tccgacgtgg
     1141 taaagttttg ccggtcgtac ctgccgccca agctgaaatc gaaatatttg ccgattgaaa
     1201 aacggtcgtt caaagaaatg tggatattgc tgccgttgat ttttcttggc acgcatttgc
     1261 gggaacgcag ggtttcgatg tagccgcaga ccgacccttc gacgacttcg ggcttaccca
     1321 aaagatactt gtctccctta tcggtgtaat ccgagtattc cgaaatcctt gccgcattgt
     1381 gggaaagctg ttcggggcgg gagatcgctt tggaagcatc gtaaccgaag cccaaagtca
     1441 gatggtgttt cgtccatttg tttttcaggg atttttcaaa cgaggcattc aaaacattgt
     1501 gctgttcgcg gtagtggaaa cggtcgctgc tgtcgtagga atacggtttg tctgccgacg
     1561 cgcggcagga tttgtccaca gcaggataca cggcgcaatt cagcttcagc gtgttgttgt
     1621 cggttgccac gccctgtttg tcaaacgaca acaccgcctt atccgcccag ttgtccgagt
     1681 atttctcatt ttcataacga tacagcaaac ccatacggcg gcggcggtga tgttcgtcga
     1741 taaatttggt gcgggaatat ttcaaaccta tgcccttgac caaattttta tcgcctttcc
     1801 actcttctat attcggcaca aaatacaagc cgtcgcggaa atcgtcgccg tcgtacaccc
     1861 cgctcttgtc gctaaacttt ttcgactcgt ccgtaccgta atactgtttt tccgtcatat
     1921 cgcggatgtc gtaacgctgt ttggtatcct caaacacgcc gccgacataa tgcctgccgc
     1981 cgaagcggta gcccagcttg gcaagccaag agccgctgcg gtaatccatc ggatcgggca
     2041 atatcctgcc gccgcccgtg taagcttggg cggacaggtt ttcgtggcgc gcctgcgcct
     2101 cccgcaccat cgcttcttct tcagcactta aaggctgatt ttgttcaata cgttctttta
     2161 cccagcggtt gagctggttt ttcaaatagt ttccgttgcc cgctaatttt gccacgggct
     2221 taggttcacg ctcgccctcc gctaagaaat attccgcctt tttattctgc ttctgaatat
     2281 cgtatgtctg gcggaacgcg tccaaacggt ctatgccgta ttccaccccg tccgcaatat
     2341 cgccgtgcgg gcgcgtttcc cgcccttggc gttcggttcg gattagcagc ccttcccaac
     2401 cgtctttgct gaaccccgcg ccgagcgact tcataaattg gcggttttta ctgccgtagg
     2461 cagtttttgc ctgtatcccc cagcttttgc cgtctgaaat caggtctgcc gcttctttgg
     2521 tgcggaaggc gaccgcgccg ccgagtgcgc cgctgccgtg atcggacgaa ccggcacctt
     2581 tgtcgatttc caccgtgctg atgttttcat attcgatttc gttgattgca ccgctgccgc
     2641 cgcgtccgcc gtatccgctc aacgatccct gcacggtaaa cgcctgtatt tgggcaacgc
     2701 cgtcaaccga aaccgccaca cggtttttat ccacgccgcg tatcgagtag ccgccgctcg
     2761 cgccgttgcc ctgttcgaca accgccacgc ccggatcgta gcgcgtcagg tcgcggatac
     2821 cgagtacctg ttctttgttc aacgtttccg acgttttgac gattttgccc aaaccggtcg
     2881 cctctttcga tcgccgtccc actttggcgg cacggacggt aacctctttc agggattggg
     2941 tctgcgcggc atcaggtgtc gccccccccg cttgggcagc ataagccgga aaagcggttg
     3001 caacagccaa ggcagtcagg gtaagctgaa aaccgtgttt cttattcatt tttccacctc
     3061 tttattatct ttcttcgcac cgaataccac gccgaattgg tgtttaactt catcaggttc
     3121 taactgttcg acaacaccag tttcagcttc aacttcaact tcagcttcaa cttcaacttt
     3181 attttcagta ccttcagtta taccaagaga tttcccatcc ttattgaaaa tagtaccgcc
     3241 caattccgcc gcctgcgggc cgtaaaatcc tccttctaca cgaagatcac tagcttggaa
     3301 ggttttgggg ttggtcgaac cagttcccga aagattgatg ccgttatccc gagtgcgcgc
     3361 tgtcgcgtgg aaaccgttgc cctcaatcac gccgttttca atatggaaag cagcttctac
     3421 accgtttttc tccgtcagcg ttccggaaat cgatttcttg ccgaaatcaa cattaaactc
     3481 tgcttttgcg gttttatccg cctgattgtc ccattgaatg ggtgtgctga tacgcgcttc
     3541 ccaagtgccg gtataatgcg ccgttccgtt ttttggaatg tcggcttccg ccgtgcggat
     3601 acctttcagg aaaaggtcga tgtccctgcc tttaggggct tccggagtgg gcaggatggc
     3661 gtttgaaccg ctgccgcttt cttctgtcgg cgattcttct tcggcttctt cgggttcagc
     3721 ttcttcctct tcagcttctt cttcgggttc ttcttcgacg atttcttcgg cttcttcgcc
     3781 ttcatcttcg gaaacttcgc cttcgccttc ttcgacgtta ccaacgcctg cactctcttc
     3841 atcctccctt ttatcttccg cctttggttt acttgccggg cgttcggttt ttatccgtcc
     3901 gagttttaca taggtcagaa aatcgcaaca agcacggacg gtcattttcc tgccgtcggc
     3961 aagctggatg atttgctctt ggtttaccaa ggagatttca cgcccttcga caagaagttt
     4021 gtcgggatga ccaaaatcgg gcatagtgga aacctcaaac ggtcggggat tttcaccact
     4081 tgcctcatca acggaaattt tcagagaatc caagattttg gtgtgttttc tagacggcat
     4141 agcaggattt gtgcctgatg cgtttgtttt ttgtttgcct gcgaatacgc cgaatacgct
     4201 tttgtcgttg ctgataaacc gtccggcaag ctcttctccg ttatcgccga aaaaaccgcc
     4261 ctcaagccgc tgatcggcat tgtcatggaa aaacaaatat tccttgtccg aatggctttt
     4321 cttcaattca ggattgacac tggcactgcc ggtaaagcgg ttgccgtcca attttgcagt
     4381 gatgtcgtaa atgaccagcg ggttcttttt atcggttttc ctttgcacat actgattttt
     4441 aatcagcttg ccctccagga tttttttgtc gaaatcaacc gtatattcgg caggatgttt
     4501 tccctccccc tcccggtcgt cggcagtcgc agcataagaa gttgctccga cattttgacc
     4561 gtaataaacg agataaccca aatcttcgct aggatctcct gcttttcctg tccgatgacg
     4621 tatggcatcg gtcatatatt gccagttacc gaaatatttt accgttcccg cgctcggtaa
     4681 agattgcgaa ggatgttctc cggaataata tacaaaacca tcataaccaa accggtgagt
     4741 aaaatacttg taatttgaag tcctctcaat ttcatcttct ccctttacat atacataacc
     4801 tgcatctaca aagttataac catatttttt attttcattt tctgatgtcc taatttgtac
     4861 attaggattg cgttgacgaa tttcatcttc aagctgctga cgttgatctt ttttggaacc
     4921 gtataaaaac agaacatcac cttctttaaa cgacagcttt tcttctgctt gtctgctatt
     4981 tggaaaatca ttgccatcct tatcagaagt tgcgatattc cgcctcaaca gccgcattgc
     5041 cgcaccgacg gcgggccggt tgaccggcgt ggtttctata gaaggcccgg cagggggggg
     5101 agtgggaacg tccttagact tgaaagtgac ggggtacgcg gtcggcgttg attcgacaac
     5161 aggctgcacg ccgaaattgc cgccgataca agatgctaaa agtaagggca acaagacaat
     5221 gccgccataa ttcggtttac acatccctac ttttcctcct atttgattaa taataattat
     5281 cattatatta atatgtacag ataatatcaa gccgttttta tagtgaatta acaaaaatcc
     5341 ggacaaggcg acgagccgca gacagtacag atacat
//
LOCUS       DAXHPV010000136         5295 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.136, whole genome shotgun sequence.
ACCESSION   DAXHPV010000136 DAXHPV010000000
VERSION     DAXHPV010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5295
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.136"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(102..518)
                     /gene="dksA"
                     /locus_tag="ACFM6C_001677"
     CDS             complement(102..518)
                     /gene="dksA"
                     /locus_tag="ACFM6C_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019899 - enzyme binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HFC6159106.1"
                     /translation="MAKLTEQDILNWNGPEDDYMNDDHLAFFRELLVKMQDELIENAS
                     ATTGHLQEHESAPDPADRATQEEEYALELRTRDRERKLLSKIQATIRNIDEGDYGFCA
                     DTGEPIGLKRLLARPTATLSVESQERRERMKKQFAD"
     gene            complement(663..1472)
                     /gene="proC"
                     /locus_tag="ACFM6C_001678"
     CDS             complement(663..1472)
                     /gene="proC"
                     /locus_tag="ACFM6C_001678"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004735 - pyrroline-5-carboxylate
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HFC6159107.1"
                     /translation="MNRVEIMNVYFLGGGNMAAAVAGGLVKQGGYRIHIANRGAEKRE
                     RLGKELGVETSATLPELHSDDVLILAVKPQDMEAACKNIRTNGALVLSVAAGLSVDTL
                     SRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDCKIADRIMKSVGLTIWLEDE
                     AQMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGVVALAEQTGE
                     DFEKLQKNVTSKGGTTHEAVEAFRRHRVAEAINEGVCACVRRSQEMERQYQ"
     gene            complement(1503..1904)
                     /locus_tag="ACFM6C_001679"
     CDS             complement(1503..1904)
                     /locus_tag="ACFM6C_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HFC6159108.1"
                     /translation="MRAIKHLAMALLLMFTVAGCQLAGWYKCSSLSGWCKPRKPAAID
                     FWDIVGESPPSLEDYEIPLSDGNRSVRVNEYESAQQSYFYRKIGKFEACGLDWRRRDG
                     KPLIETFKQEGFDCLKKQGLRRNGLSERVRW"
     gene            complement(1909..2595)
                     /locus_tag="ACFM6C_001680"
     CDS             complement(1909..2595)
                     /locus_tag="ACFM6C_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HFC6159109.1"
                     /translation="MTVLQERYCEVSDRIGKLVLQAGREPHSVSLIAVSKTFPSDGIR
                     EVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVC
                     RLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAAKHGVAPEEAVVLAVEVAKLPNIVVRG
                     LMCVAKANSSETELKVQFQTMRKLLADLNAAGVKADVLSMGMSDDMPAAIACGATHVR
                     IGSAIFGKRG"
     gene            2715..3758
                     /gene="pilT"
                     /locus_tag="ACFM6C_001681"
     CDS             2715..3758
                     /gene="pilT"
                     /locus_tag="ACFM6C_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HFC6159110.1"
                     /translation="MQITDLLAFGAKNKASDLHLSSGISPMIRVHGDMRRINLPEMSA
                     EEVGNMVTSVMNDHQRKIYQQNLEVDFSFELPNVARFRVNAFNIGRGPAAVFRTIPST
                     VLSLEELKAPSIFQKIAESPRGMVLVTGPTGSGKSTTLAAMINYINETQPAHILTIED
                     PIEFVHQSKKSLINQRELHQHTLSFANALRSALREDPDVILVGEMRDPETIGLALTAA
                     ETGHLVFGTLHTTGAAKTVDRIVDVFPAGEKEMVRSMLSESLTAVISQNLLKTHDGNG
                     RVASHEILIANPAVRNLIRENKITQINSVLQTGQASGMQTMDQSLQSLVRQGLIAPEV
                     ARRRAQNSESMSF"
     gene            3921..5147
                     /locus_tag="ACFM6C_001682"
     CDS             3921..5147
                     /locus_tag="ACFM6C_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HFC6159111.1"
                     /translation="MNTDNLHDILDEMVQVYSQKKQSRSETPAEIGAHFHPLLDRLCE
                     TAEAQNASDILISKGFPPSLKINSALTPQPQKALTGEETAAIAASTMNAEQSEIFRRD
                     GEINYSVQSRSGTRYRANAYHSQGSAGLVLRRINHVIPQMQELGLPEKLKDLAVAPRG
                     LLIIVGPTGSGKSTTMATMLEHRNKTLPSHIVTIEDPIEFIYKPRRCIFTQREIGVDT
                     INWQTAVQNAMRQSPDVVCIGEVRSRESMEYAMQLAQTGHLCIFTLHANTAPQSLERI
                     LNFYPKEQHNQILIDIALNLTGIICQRLALKQDKTGRTAVVDLLINTPAIQDFILKGD
                     LMNISKIMETAKTDGMQTMDQNLFELYRHGIISYEEALRQSVSANNLRLHIQLHKEGK
                     TPELLYDRVNGLNLIS"
BASE COUNT         1327 a         1633 c         1192 g         1143 t
ORIGIN      
        1 ccgcctccaa caatcctttc ctctccctcc tccggctggt gcgcctttgt gaatatgctg
       61 tctgaaactc ggggactcag acggcatttt gtttgccgcc atcagtcggc aaactgtttt
      121 ttcatcctct ctcggcgttc ttgggactca acagataaag tggctgtcgg gcgtgccagc
      181 agccgcttca gaccgatagg ctctcccgta tcggcacaga atccataatc cccttcatca
      241 atattgcgga tggtcgcctg tattttactg agaagttttc gttcccgatc gcgggtacgg
      301 agttccaatg cgtactcttc ttcctgtgtg gcacggtcgg caggatcggg ggctgattcg
      361 tgttcttgga gatgccctgt cgtagcggaa gcattttcga tgagttcatc ttgcatttta
      421 accagcaatt cacgaaaaaa agccaaatgg tcgtcattca tataatcgtc ttccggccca
      481 ttccaattca aaatatcttg ttctgtcagc tttgccataa tgtatgtcct ctcagttcac
      541 cgaaaaaaaa gcaccacaaa gtggctttat tcctttgatt tttataaggc ttattgccta
      601 aggcgttttt gaaaacgcgc atcataacac gttttggatt ggtttttttt attttctcta
      661 cattattgat attgccgttc catttcctgc gaacggcgca cacaggcaca aacgccttca
      721 tttatggctt cggcgacacg atgccgtctg aaggcttcca cggcttcgtg agttgtcccg
      781 ccttttgacg ttacattttt ttgaagcttc tcgaaatctt caccagtctg ctcggcaagg
      841 gcaaccactc ctttaaatgt tgccagactg agcgcgcgtg cttctgccat atcaaaccct
      901 tgtcggatgg cggcattttg caatgcgtcc agcagataaa acacataagc cggcccgctg
      961 ccgctgatgc cggtaatgcc gtgcatttgc gcttcatctt ccaaccaaat ggtcaaaccg
     1021 acagatttca tgattcgatc ggcaatcttg cagtctgttt ccgatacttc cgcttcggca
     1081 tacataccgg atacgcccag cccgattttt ccgggtgtat tcggcataac ccggacaatg
     1141 cggcgtgttc ccccgaggta acggctgagc gtatcaaccg acaatccagc tgcgacagaa
     1201 agcaccaatg caccattggt gcggatattt ttgcacgcgg cttccatatc ctgcggcttg
     1261 acggcaagga ttaaaacatc gtcggaatga agctccggca gggttgccga agtttcgacc
     1321 cccaactctt ttcccaaacg ttcgcgtttt tccgcacccc gattggcaat atggatgcgg
     1381 taaccgcctt gtttgaccaa tccgcccgca acggcagccg ccatattgcc gccgccgaga
     1441 aaataaacat tcattatttc taccctattc aaaattacct gactaaattc attcccaatt
     1501 ttttaccatc ggacgcgctc ggacagaccg ttgcgccgca acccctgctt tttcaaacaa
     1561 tcaaaacctt cctgtttgaa cgtctcaatc aaaggtttgc cgtcacgcct acgccaatcc
     1621 aacccgcagg cttcaaactt ccctattttc ctgtaaaagt aagattgttg tgcggattca
     1681 tattcgttta ccctgacgga acgattgccg tctgaaagcg gtatctcgta gtcctctaaa
     1741 gacggcggac tctcgccgac aatatcccaa aaatcgatgg cggcaggttt tctcggctta
     1801 caccagccgg acagggacga acacttatac caacctgcca actgacagcc ggctaccgta
     1861 aacataagca ataacgccat tgcaagatgt tttattgcgc gcattccatc agcccctttt
     1921 cccgaaaatc gcgctgccga tacggacatg tgttgcaccg cacgcaatgg cggcaggcat
     1981 atcgtccgac atccccatag acagcacgtc cgccttaacg ccagccgcat tgaggtcggc
     2041 aagcagtttc cgcatcgttt gaaattgcac cttcaactcc gtttcactgc tgttggcttt
     2101 ggcaacacac atcaagccgc gtacgacgat attcggcagc ttcgccactt cgaccgcaag
     2161 cacgaccgct tcttcgggcg cgacaccgtg ttttgccgcc tcgcccgcaa tgttcacctc
     2221 gatacacacc tgcaaaggcg gcattgagga aggacgttgc ccgctcagcc ggacggcggt
     2281 tttcagacgg catacggtat gcacccaatg cgcgcgttcg gcgacaaatt tggttttgtt
     2341 ggactgcaca tcgccgatga cgtgccacac gatgtcggtc aaatccgcca actcttccgt
     2401 tttgccgtac cactcctgaa tatagttctc gccgaaatca cgctgtccgg cggcgtaaac
     2461 ttcgcggatg ccgtctgaag ggaaagtctt actgacggca atcaggctga cggaatgcgg
     2521 ctccctgccc gcctgcagaa ccaattttcc gatacggtcg gacacctcac aataacgttc
     2581 ttgcaacacc gtcatagatt atcccctaat taaaaatgat taaacagttg aaacccctcc
     2641 agtcagggcg gtacaatcaa ggttgttaga accattccaa ccaatcgaaa cattatacta
     2701 aacagagccg cattatgcag attaccgact tactcgcctt cggcgctaaa aacaaagcat
     2761 ccgaccttca cctgagttcg ggcatatccc ctatgattcg ggttcacggc gatatgcggc
     2821 gcatcaacct tcccgaaatg agcgcggaag aggtcggtaa tatggtaact tcggtgatga
     2881 acgaccacca gcggaaaatc taccagcaaa acttggaagt cgacttctcg tttgaactgc
     2941 ccaacgtcgc ccgattccgc gtcaacgcct tcaacatcgg ccgcggtccc gccgccgtat
     3001 tccgcaccat tcccagcacc gtcttatcgc tggaagaatt gaaagccccg agcattttcc
     3061 aaaaaatcgc agaatcgccg cgcggcatgg ttttggttac cggccctacc ggttcgggca
     3121 aatcgaccac gcttgccgca atgatcaact acatcaacga aacccagccg gcacacatcc
     3181 tgaccatcga agacccgatc gaattcgtcc accaaagcaa aaaatccctg attaaccagc
     3241 gcgagctgca ccagcacacc ctcagcttcg ccaacgcgct gcgttccgca ttgcgcgaag
     3301 accccgacgt tatccttgtt ggcgagatgc gcgaccccga aaccatcggc ttggcactga
     3361 ccgccgccga aaccggacac ttggttttcg gcacgctgca cacgaccggc gcagcaaaaa
     3421 ccgtcgaccg tatcgtggac gtattcccag cgggagaaaa agaaatggtg cgctctatgc
     3481 tgtccgaatc gctgaccgcc gtcatctccc aaaacctgct gaaaacgcac gacggcaacg
     3541 gccgtgtcgc ctcgcacgaa atcctgattg ccaaccccgc cgtccgcaac ctcatccgcg
     3601 aaaacaaaat cacgcagatt aactccgtcc tgcaaaccgg gcaggcgagc ggtatgcaga
     3661 cgatggacca atcgctgcaa tcgctggtgc gccaagggct gatcgcaccg gaagtcgcac
     3721 gcagacgcgc gcaaaacagc gaaagtatga gtttctgaca cacaaccgcc ttccggccat
     3781 accggcggga aaacaaggcg caaacacgcg gggcgggacg cagcatcccg cccggctacc
     3841 tttccgaaca ggaagcgtcc gccttcctgt tgaaacctgc cgccgcaaac tgcaaggctt
     3901 aaaccgaaaa gaagctaacg atgaataccg ataacctgca cgacatcttg gacgaaatgg
     3961 ttcaagtgta ttctcaaaaa aaacaaagcc gatccgaaac cccggccgaa atcggcgcac
     4021 acttccaccc gctgctcgac cgcctgtgcg aaaccgcaga agcacaaaac gcgtccgaca
     4081 tccttatcag caaaggattc ccgccctcgt tgaaaatcaa cagcgcatta accccgcagc
     4141 cgcaaaaggc gctgacgggc gaggaaaccg ccgccatcgc cgcatcgacg atgaacgccg
     4201 aacaatcgga aatattccgg cgcgacggcg aaatcaacta ctccgtccag tcgcgcagcg
     4261 gcacgcgcta ccgcgccaac gcctaccaca gccaaggcag cgcaggtttg gttttgcggc
     4321 gcatcaacca cgtcatcccg caaatgcagg aattgggcct gcccgaaaaa ctcaaagacc
     4381 tcgccgtcgc accgcgcggg ctgctgatta tcgtcgggcc taccggttcg ggcaaatcca
     4441 ccacgatggc gactatgctc gaacaccgca acaaaaccct gcccagccat atcgttacca
     4501 tcgaagaccc gattgagttt atctacaaac cgcgccgctg catctttacc cagcgcgaaa
     4561 tcggcgtcga caccataaac tggcagacgg cggtacaaaa cgctatgcgc cagtcccccg
     4621 acgtggtctg catcggcgaa gtccgcagca gggaaagtat ggaatacgcg atgcagctcg
     4681 cccaaaccgg ccacctgtgc atttttacgc tccacgccaa caccgcgccg cagtcgctcg
     4741 aacgcatact caacttctac cccaaagaac agcacaacca aatactgatc gacatcgccc
     4801 tcaatctgac cggcatcatc tgccaacgcc tcgccctcaa acaagacaaa acgggcagga
     4861 cggcggttgt cgacttgctc atcaacacac ccgccatcca agacttcatc ctgaagggcg
     4921 acctgatgaa catcagtaaa atcatggaaa ccgccaaaac cgacggaatg cagacgatgg
     4981 atcaaaacct tttcgaactg taccgtcacg gcatcatcag ttacgaagaa gccctgcgcc
     5041 agtccgtttc cgccaacaac ctgcgattgc acatccaact gcacaaagaa ggcaaaacgc
     5101 ccgaactcct ttacgacagg gtcaacggtc tcaacctcat ttcctgatcc gcaaaaccca
     5161 atgccgtctg aaaaccgcat ccccgttttc agacggcatg attttatccg ccccattcat
     5221 gtgctacact ttatagtgga ttaaatttat agtggattaa caaaaatcag gacaaggcga
     5281 cgaagccgca gacag
//
LOCUS       DAXHPV010000137         5259 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.137, whole genome shotgun sequence.
ACCESSION   DAXHPV010000137 DAXHPV010000000
VERSION     DAXHPV010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5259
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.137"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            109..804
                     /gene="pgl"
                     /locus_tag="ACFM6C_001683"
     CDS             109..804
                     /gene="pgl"
                     /locus_tag="ACFM6C_001683"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017057 - 6-phosphogluconolactonase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HFC6159112.1"
                     /translation="MFVWHEYENAAEAAQSLADAVADALQGALDEKGGAVLAVSGGRS
                     PIAFFNALSQKDLDWKNVGITLADERIVPTVHADSNTGLVREYLLKNKAEAAMWIPMV
                     EDGKTETELHPDAVVDYALKHYKQPDVLVLGMGNDGHTASIFPKAPQFQTAIDGSAGV
                     ALVHTTPVTAPHERVSMTLDAIAHTGHVFLAIRGEEKKAVFDQAAQGENREYPINLVL
                     NHQGVNCHVFYAE"
     gene            785..1771
                     /locus_tag="ACFM6C_001684"
     CDS             785..1771
                     /locus_tag="ACFM6C_001684"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004340 - glucokinase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005536 - D-glucose binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0051156 - glucose 6-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HFC6159113.1"
                     /translation="MSSTPNKQAGYPRLVADIGGTNARFALETAPRVIEKAAVLPCKD
                     YDTVTDAVRAYLNQSGATAVRHAAFAIANPILGDWVQMTNHHWAFSIETTRQTLGLDT
                     LILLNDFTAQALAVTQTSSKDLMQVGGQKPVEFAPKAVIGPGTGLGVSGLVHSHAGWV
                     ALAGEGGHTSFPPFDDMEVLIWQYAKNKYGHVSAERFLSGAGLSLVYEALAAKQKAKP
                     AKLMPSEITEKALSGASPLCRQTLDIFCAMLGTVASNLALTLGARGGVYLCGGIIPRV
                     LEYFKTSPFRSRFENKGRFEAYLAAIPVYVVLSEFPGISGAAAALDNHLRNV"
     gene            1821..2669
                     /gene="hexR"
                     /locus_tag="ACFM6C_001685"
     CDS             1821..2669
                     /gene="hexR"
                     /locus_tag="ACFM6C_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator HexR"
                     /protein_id="HFC6159114.1"
                     /translation="MLSKISESLANLSGAERKVAECALAEPKWFVHAAVAEIAERASV
                     SQPTVIRFCRSLGYKGLPEFKLALSASIGHEGMPYVHEELNADDDMASVVEKVLGNAA
                     ASLLGERRFLKESELENAIATLMHARRVEFYGVGNSGIVAQDAQHKFFRFGMSTVAYV
                     DTHTQLMAASVLSDQDVLVAISNTGSSIELLDAVSIAKENGASVIALTRNDSPLAQLA
                     DCVLSVATQENAELYTPMVSRLLQLAVIDILAIGLALRLGDAASLQLQKSKKSIHNKH
                     IDYDKD"
     gene            2790..4436
                     /gene="pgi"
                     /locus_tag="ACFM6C_001686"
     CDS             2790..4436
                     /gene="pgi"
                     /locus_tag="ACFM6C_001686"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004347 - glucose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HFC6159115.1"
                     /translation="MKHLHDLPAWSKLWNHFDDSKTLHMREMFEQDPQRAERYWLQVG
                     GLTLDYSKNRINDETMSLLFELAREAGVPERMRQMFHGEKINTTENRAVLHVALRNRT
                     NSPIVVDGEDVMPKVNRVLQRMGEFAHEVRSGSWLGYTNQVITDVVNIGIGGSDLGPL
                     MMCTALKPFGHPRLNMHFVSNVDGSQLRDVLSKVHPETTLFIIASKTFTTQETLTNAL
                     TAREWFLNHAGDEEAVAKHFAAVSTNQKAVAEFGIDTANMFEFWDWVGGRYSLWSAIG
                     LPIMLYLGEENFIEMLNGAHLMDQHFINTPLERNLPVILALIGIWYINYYGGGSHVIA
                     PYDQHLHRLPKFIQQLDMESNGKQVTLDGKAVGHETSPIIWGETGINGQHAFFQLLHQ
                     GTHITPIDLIASLEKRSNLPGHHEILLANVFAQAEAFMRGKTPDEVRAELKAQGMDEA
                     RIEELVPHKTFSGNRPTNLILMDKVNPRNMGSLIAMYEHKTFVQGIIWGINSFDQWGV
                     ELGKQLAKTILGELTGETGSQKHDSSTERLINLYLQTNRK"
     gene            4579..5001
                     /locus_tag="ACFM6C_001687"
     CDS             4579..5001
                     /locus_tag="ACFM6C_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
                     /protein_id="HFC6159116.1"
                     /translation="MALIKEPLDKAKQRNEELEAAEEAAAQEALGREQEVDRVSEWEE
                     RYKLSRSEFEQLWKGLPQTVQNKLQASQKTWKSGMDKICANNAKAEGETPNGIKVSEL
                     ACKTVETEARLEELYNRKKALIDEMVREADKKELPKRL"
BASE COUNT         1336 a         1467 c         1393 g         1063 t
ORIGIN      
        1 cagtcccgat atttggtatc aaaagcataa acaactgttc ggccggcata ttgctcaacc
       61 catttccata acggaatatg ccgtctgaaa taaaaaaagg acacaaatat gtttgtttgg
      121 cacgaatacg aaaatgcggc agaagcggcg cagtctttgg ctgacgcagt ggcggatgct
      181 ttgcagggcg cactggacga gaagggcggt gcggtgttgg cagtttccgg cggacgttcg
      241 ccgattgcat ttttcaacgc cctgtcgcaa aaagatttgg attggaaaaa cgtcggcatc
      301 accttggcag atgaacgcat cgtgccgacc gtccacgccg acagcaatac cggtttggtg
      361 cgcgaatacc tgttgaagaa caaagcggaa gcggcaatgt ggattcctat ggtggaagac
      421 ggaaaaactg aaaccgaatt acatcccgat gctgttgtcg attatgcact gaaacattac
      481 aaacagcccg atgttttggt tttgggtatg ggaaacgacg ggcatacggc ttcgattttc
      541 ccgaaagctc cgcagtttca gacggcaatc gacggttcgg caggtgtcgc gctggtgcat
      601 accacgcccg ttaccgcgcc gcacgagcgc gtcagtatga ccttggatgc gattgcccat
      661 acggggcatg tgtttttggc gatacggggc gaagagaaaa aagccgtgtt cgaccaagcc
      721 gcacaaggcg aaaaccgcga atatccgatc aacctcgttt tgaaccatca aggagtgaac
      781 tgccatgtct tctacgccga ataaacaagc cggatatccc cgactggtcg ccgatatcgg
      841 cgggacgaat gcacgctttg cgctggaaac cgcgccgcgc gtcattgaaa aagccgccgt
      901 gcttccgtgt aaagactacg atacggttac cgatgcggtg cgtgcctatc tgaatcaaag
      961 cggtgcaaca gccgtacggc acgcggcatt tgccatcgcc aacccgattt tgggcgactg
     1021 ggtgcagatg accaaccacc attgggcgtt ttccatcgaa accacccgtc agactttggg
     1081 gctggacacc ctcatccttt tgaacgactt taccgcgcag gcattggcgg taacgcagac
     1141 ttcaagcaaa gacctgatgc aggtaggcgg gcaaaagcct gtcgaatttg cccccaaagc
     1201 cgttatcggc cccggtaccg gcctgggcgt gagcggattg gtgcacagcc acgcaggctg
     1261 ggtggctttg gcaggcgagg gcgggcatac cagtttcccg ccgtttgacg atatggaagt
     1321 gctgatttgg cagtacgcca aaaacaaata cggccatgtt tccgccgaac gctttttgag
     1381 cggcgcgggc ttgagcttgg tttacgaggc tttggctgca aaacagaaag ccaaacccgc
     1441 caaactgatg ccgtctgaaa tcacggaaaa ggctttgagc ggcgcgtcgc ctttgtgccg
     1501 tcagactttg gacatcttct gcgccatgct cggcacggtt gcttccaacc tcgccctgac
     1561 gctgggtgcg cgcggcggcg tgtacctgtg tggcggcatt attccccgcg tgttggaata
     1621 tttcaaaact tccccgttcc gcagccgttt cgagaacaag ggcaggtttg aagcatatct
     1681 tgccgcgatt cccgtgtatg tcgtcttgag cgagtttccc ggaatttccg gtgcggctgc
     1741 ggctctcgac aaccatttga gaaacgttta accacagcgg ctccttgcag cggggctgca
     1801 ttatcgaagg gcatatcatt atgttaagca aaatcagcga atcactggca aacctttccg
     1861 gtgcggaacg caaagtcgcc gaatgtgcat tggcggaacc caaatggttc gtccatgccg
     1921 ccgttgccga aattgccgaa cgtgcgtccg tcagccagcc gaccgtcatc cgattctgcc
     1981 gcagcttggg ttataaaggg ctgcccgagt tcaagctcgc cttgtccgcc agcatcggtc
     2041 atgagggtat gccctatgtc cacgaagaac tcaacgccga cgacgatatg gcaagcgtgg
     2101 tcgagaaagt attgggcaat gccgccgcct cgctgttggg cgaacgccgc ttcctgaaag
     2161 agtcggagct ggaaaacgcc attgccacgc tgatgcacgc ccgccgcgtc gagttttacg
     2221 gtgtcggcaa ttccggtatc gtcgcgcagg acgcgcagca caagtttttc cgtttcggaa
     2281 tgtccacggt cgcctatgtc gatacgcaca cgcagctgat ggcggcatcc gttttgagcg
     2341 atcaggatgt tttggttgcc atttccaaca cgggttcgtc tatcgaactt ttggatgcgg
     2401 tcagcatcgc caaagaaaac ggcgcgtccg tcatcgcact gacccgcaac gattcgcctc
     2461 tggcgcaact tgccgactgc gtgttgagcg ttgccacaca ggaaaatgcc gaactctaca
     2521 cgcccatggt ttcccgcctc ttgcagcttg ccgtcatcga catccttgcc atcggacttg
     2581 ccctgcgctt gggcgatgct gccagcctgc aattgcagaa aagcaaaaaa agcatacaca
     2641 acaagcacat cgattacgac aaagattgac cttcagacgg catcccacaa atgccgtctg
     2701 aaatgccgaa caacggtcgt cggcggcttg cggcagtttc cggcagcctt ttcatcccac
     2761 aacaaaaaac ctcattcagg agcatataga tgaaacacct tcacgactta cccgcatggt
     2821 cgaaattgtg gaaccacttt gacgacagca aaacattgca tatgcgcgaa atgttcgagc
     2881 aagacccgca gcgtgcggaa cgctactggc tgcaagtcgg cggactgacg ctggactact
     2941 ccaaaaaccg catcaacgac gaaaccatgt cgcttttgtt cgagcttgcc cgagaagcag
     3001 gcgtgccgga gcggatgcgg cagatgttcc acggcgaaaa aatcaatacc accgaaaacc
     3061 gcgccgtcct gcatgtcgcc cttcgcaacc gcaccaattc gccgattgtg gttgacggtg
     3121 aagatgtgat gcccaaagtc aaccgcgttt tgcaacgtat gggcgaattt gcacacgaag
     3181 tccgcagcgg aagctggctg ggctatacca accaagtcat taccgacgtt gtcaacatcg
     3241 gcatcggcgg atcggatttg ggtccgctga tgatgtgtac cgcgctcaaa cctttcggtc
     3301 atccgcgcct caatatgcac ttcgtctcca acgtggacgg ctcgcaactg cgcgacgtat
     3361 tgtccaaagt ccaccccgaa accacgctgt tcatcatcgc ctccaaaaca tttaccacgc
     3421 aggaaacgct gaccaacgcg ctgaccgcgc gcgaatggtt tttgaatcat gcgggcgacg
     3481 aagaagccgt tgccaaacac ttcgccgccg tttccaccaa tcaaaaagcc gtcgccgaat
     3541 tcggcatcga caccgccaat atgtttgaat tttgggattg ggtcggcggt cggtacagcc
     3601 tgtggtccgc catcggattg ccgattatgc tgtatctcgg cgaagaaaac ttcatcgaaa
     3661 tgctcaacgg cgcgcacctg atggaccaac acttcatcaa cacaccgctc gagcgcaacc
     3721 tgcccgtcat tctcgccctc atcggcatct ggtatatcaa ctactacggc ggcggcagcc
     3781 acgtcatcgc gccttacgac caacatttgc accgcctgcc caaattcatc cagcagctcg
     3841 atatggaaag taacggcaaa caggttacgt tggacggcaa agcagtcgga cacgaaacct
     3901 cgccgattat ctggggcgaa acgggcatta acggccagca cgccttcttc caactgctgc
     3961 accaaggcac gcacattacc cccatcgacc tgattgcctc gcttgaaaaa cgcagcaacc
     4021 tgcccggaca ccacgaaatc ctgcttgcca acgtcttcgc ccaagcagaa gcctttatgc
     4081 gcggcaaaac ccccgacgaa gtccgcgccg aactcaaagc gcagggtatg gatgaggcgc
     4141 gcatcgaaga gctggtcccg cacaaaacct tctccggtaa ccgcccgacc aacctcatcc
     4201 tgatggacaa ggtcaacccg cgtaatatgg gcagcctgat tgccatgtac gaacacaaaa
     4261 ccttcgtaca aggcatcatt tggggcatca acagcttcga ccagtggggc gtggaactcg
     4321 gcaaacaact ggctaaaacc attttgggcg aactgaccgg cgaaaccggg tcgcaaaagc
     4381 acgacagctc gaccgaacgc ctgatcaacc tctacctgca gaccaaccgc aaataaaacc
     4441 tgcggaaaaa tgccgtctga acgccgaccg tttcaaacgg catttttatc gaacaggaaa
     4501 accgtcggta aacttgcaga gcgtgtgcaa tcccgatatg atggtttgca taaatttaaa
     4561 catatatgtt ccgcagctat ggcactgatt aaagagccgt tggacaaagc gaaacaaagg
     4621 aacgaagaac ttgaagcggc agaagaagcg gcggcgcagg aggcattggg tcgggagcag
     4681 gaagtcgacc gcgtatccga atgggaagaa cgctacaagc tgtcgcgcag cgagttcgag
     4741 cagctctgga aaggattgcc tcaaaccgta cagaataagc tgcaagcctc acagaaaaca
     4801 tggaaaagcg gtatggacaa aatctgtgcc aacaatgcga aagccgaagg tgaaacgcca
     4861 aacggcataa aagtcagcga actggcatgc aaaacggtgg aaaccgaagc acgcttggaa
     4921 gagctgtaca accgtaaaaa agcccttatc gacgaaatgg tcagggaagc ggacaagaaa
     4981 gaactgccaa agcggctctg aacagcgcgg ttcaggcact gcccgccgat attgccgaaa
     5041 ccgtcatgcc cgagtaccgc aactgacaaa acggtttgaa tgccaaatgc gccgacggcg
     5101 acgaatacgg cgtggcacaa tctgactgcc gtaccagaga aatcaatgcg aaaaccaaag
     5161 aaatccaagg ttatctgatt gactgaaact tggatgcggg aatgtcggcg gcttttgcgt
     5221 ttttgtcgtt tttatagtga attaaattta aaccgatac
//
LOCUS       DAXHPV010000138         5232 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.138, whole genome shotgun sequence.
ACCESSION   DAXHPV010000138 DAXHPV010000000
VERSION     DAXHPV010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5232)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5232)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5232
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.138"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            176..2299
                     /locus_tag="ACFM6C_001688"
     CDS             176..2299
                     /locus_tag="ACFM6C_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HFC6159117.1"
                     /translation="MNNPLVNQAAMVLPVFLLSACLGGGGGSFDLDSVDTEAPRPAPK
                     YQDVSSEKPQAQKDQGGYGFAMRLKRRNWHPQANPKEDEIKLSENDWEATGLPGDPKN
                     LPERQKSVIDKVETGSDSNIYSSPYLTQSSHQNGSINGGANQPKNEATGYKNFEYVYS
                     GWFYKHAKQKIQNKIAQQGDDGYIFYHGKEPSRQLPASGTVTYKGVWHFVTDTKNGQK
                     FYEIIQPSKRQGDRYSGFSGDDGEEYSNKNEATLQSNHEGYGFTSNLEVDFDNKKLTG
                     KLIRNNRVTNATTGGKHTTQYYSLEAQVTGNRFNGKATATDKPGNGETKQHPFVSDSS
                     SLSGGFFGPKGEELGFRFLSDDKKVAVVGSAKTQDKPGNGAAASDGAGAAASNGAAAM
                     PSENGKLTTVLDAVELTHGGTAIKKLDNFSNAAQLVVDGIMIPLLPKDSESGNNQANQ
                     GTNGGTAFTRKFAHTPKSDEKDTQAGTAANGDQAASNTAGDTNGKTKTYEVEVCCSNL
                     NYLKYGLLTRKTAGNTGEGGNGSPTAAQTGAQSMFLQGERTDEKEIPNDQNIVYRGSW
                     YGHIANGTSWSGNASNATSGNRADFTVNFGEKKITGTLTAENRQAATFTIEGMIQGNG
                     FEGTAKTGDGGFALDPKNTEASHKASINATVTGGFYGPKAEEMGGWFAYPGDSQTQPS
                     ASGSGASAANSATVVFGAKRQQLVQ"
     gene            2386..5133
                     /gene="tbpA"
                     /locus_tag="ACFM6C_001689"
     CDS             2386..5133
                     /gene="tbpA"
                     /locus_tag="ACFM6C_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein TbpA"
                     /protein_id="HFC6159118.1"
                     /translation="MQQQHLFRLNILCLSLMTALPVYAENVQAGQAQEKQLDTIQVKA
                     KKQKTRRDNEVTGLGKLVKTADTLSKEQVLDIRDLTRYDPGIAVVEQGRGASSGYSIR
                     GMDKNRVALTVDGLAQIQSYTAQAALGGTRTAGSSGAINEIEYENVKAVEISKGSNSV
                     EQGSGALAGSVAFQTKTADDVIGEGRQWGIQSKTAYSGKNRGLTQSIALAGRIGGAEA
                     LLIHTGRRAGEIRAHEDAGRGVQSFNRLVPVEDDNQYAHFVVEEECESKNYETCKANP
                     KKDVVGKDERQTVSTRDYTGPNRFLADPLSYESRSWLFRPGFRFENKRHYIGGILERT
                     QQTFDTRDMTVPAFLTKAVFDENKKQAGSLSGNGKYAGDHKYGGLFTNGENGALVGAE
                     YGTGVFYDETHTKSRYGLEYVYTNADKDTWADYARLSYDRQGIGLDNHFQQTHCSADG
                     SDKYCRPSADKPFSYYKSDRVIYGESHRLLQAAFKKSFDTAKIRHNLSVNLGFDRFGS
                     NLHHQDYYYQNANRAYSSKIPTQNGNQNISPNGSQDKPYWVSIGGGNVVTGQICRSGN
                     NTYTDCTPRSINGKSYYAAVRDNVRLGRWADVGAGLRYDYRSTHSDDGSVSTGTHRTL
                     SWNAGIVLKPADWLDLTYRTSTGFRLPSFAEMYGWRSGDKIKAVKIDPEKSFNKEAGI
                     VFKGDFGNLEASWFNNAYRDLIVRGYEAQIKNGKEEAKGDPAYLNAQSARITGINILG
                     KIDWNGVWDKLPEGWYSTFAYNRVRVRDIKKRADRTDIQSHLFDAIQPSRYVVGLGYD
                     QPEGKWGVNGMLTYSKAKEITELLGSRALLNGNSRNTKATARRTRPWYIVDVSGYYTI
                     KKHFTLRAGVYNLLNYRYVTWENVRQTAGGAVNQHKNVGVYNRYAAPGRNYTFSLEMK
                     F"
BASE COUNT         1493 a         1326 c         1348 g         1065 t
ORIGIN      
        1 gatatacgtg ggaatgacgg gatataggtt tccgtgcgga cgcgttcgga ttcacgactg
       61 cgcgggaata acgggatttt ggtgtattta ctaaaaaaat aaaaaagcat ttgcaaattt
      121 gttaaaaata aataaaataa taatctttat cattctttaa ttgaattagg tttatatgaa
      181 caatccattg gtgaatcagg ctgctatggt gctgccggtg tttttgttga gtgcttgttt
      241 gggcggaggc ggcggcagtt tcgatcttga ttctgtcgat accgaagccc cgcgtcccgc
      301 gccaaagtat caagatgttt cttccgaaaa accgcaagcc caaaaagacc aaggcggata
      361 cggttttgca atgcgcctca agcggcggaa ttggcatccg caggcaaatc ctaaagaaga
      421 tgagataaaa ctttctgaaa atgattggga ggcgacggga ttaccgggtg accctaaaaa
      481 cttacctgag cgacagaaat cggttattga taaagtagaa acaggcagcg acagcaatat
      541 ttattcttcc ccctatctca cgcaatcaag ccatcaaaac ggcagcatta atggcggtgc
      601 aaaccaacca aaaaacgaag caacaggtta caaaaatttt gaatatgttt attccggttg
      661 gttttataaa catgctaaac aaaaaattca aaataaaatt gcacaacaag gcgacgacgg
      721 ctatatcttt tatcacggca aagaaccttc ccgacaactt cccgcttctg gaacagttac
      781 ctataaaggt gtgtggcatt ttgtaaccga tacgaaaaat ggacaaaaat tttatgaaat
      841 tatccagcct tcaaaaagac aaggcgacag gtatagcgga ttttcgggtg atgacggcga
      901 agaatattcc aataaaaatg aagcgacttt acaaagcaat catgaaggtt atggttttac
      961 ctcgaattta gaagtggatt tcgacaataa gaaattgacg ggcaaactga tacgcaacaa
     1021 tagagttaca aacgctacta ctggcggcaa acataccacg caatattaca gccttgaggc
     1081 tcaagtaaca ggcaaccgct tcaacggcaa ggcaacggca accgacaaac ccggcaacgg
     1141 cgaaaccaaa caacatcctt ttgtttccga ctcgtcttct ttgagcggcg gctttttcgg
     1201 cccgaagggt gaggaattgg gtttccgctt tttgagcgac gataaaaaag ttgccgttgt
     1261 cggcagcgcg aaaacccaag acaaaccggg aaatggcgcg gcggcttcag acggcgcagg
     1321 tgcggcagca tcaaacggtg cggcagctat gccgtctgaa aacggtaagc tgaccacggt
     1381 tttggatgcg gtcgagctga cgcacggtgg cacagcaatc aaaaaactcg acaacttcag
     1441 caacgccgcc caactggttg tcgacggcat tatgattccg ctcctgccca aggattccga
     1501 aagcgggaac aatcaagcta atcaaggtac aaacggcgga acagccttta cccgcaaatt
     1561 tgcccacacg ccgaaaagcg atgaaaaaga cacccaagca ggtacggcgg cgaatggcga
     1621 tcaagccgct tcaaatacgg caggtgatac caatggcaaa acaaaaacct atgaagtcga
     1681 agtctgctgt tccaacctca attatctgaa atacgggttg ctgacgcgca aaactgccgg
     1741 caatacgggg gaaggtggca acggcagccc aaccgccgcc caaacgggcg cgcagagtat
     1801 gttccttcaa ggcgagcgca ccgatgaaaa agagattcca aacgaccaaa acatcgttta
     1861 tcgggggtct tggtacgggc atattgccaa cggcacaagc tggagcggca atgcttccaa
     1921 tgcaacgagt ggcaacaggg cggactttac cgtgaatttt ggcgagaaaa aaattaccgg
     1981 cacgttaacc gctgaaaaca ggcaggcggc aacctttacc attgagggaa tgattcaggg
     2041 caacggcttt gaaggtacgg cgaaaaccgg tgatggcggc tttgcgctgg atccgaaaaa
     2101 tacggaagcc tcccataaag cgagcatcaa tgccactgta accggcggtt tttacgggcc
     2161 taaagccgaa gaaatgggtg gatggtttgc ttatccgggc gacagtcaga cgcagccgtc
     2221 cgcttcgggg tcaggcgcat cagccgccaa cagcgcgacc gtggtattcg gtgcgaaacg
     2281 ccaacagctt gtgcaataag catggctgcc gaacaatcga gaataaggct tcagacggca
     2341 tcgctccttc cgatgccgtc tgaaagcgaa gagtagggaa acactatgca acagcaacat
     2401 ttgttccgat taaatatttt atgcctgtcg ctgatgaccg cgctgcccgt ttatgcagaa
     2461 aatgtgcaag ccggacaagc acaggaaaaa cagttggata ccatacaggt aaaagccaaa
     2521 aaacagaaaa cccgccgcga taacgaagta accggtttgg gcaaattggt caaaaccgcc
     2581 gacaccctca gcaaggaaca ggtactcgat atccgtgacc tgacgcgtta cgaccccggc
     2641 atcgccgtgg tcgaacaggg gcgcggcgca agctctggct actcgatacg cggtatggac
     2701 aaaaaccgcg tcgccttgac ggtggacggc ttggcgcaaa tacagtccta caccgcgcag
     2761 gcggcattgg gcgggacgag gacggcgggc agcagcggcg caatcaatga aatcgagtat
     2821 gaaaacgtca aagctgtcga aatcagcaaa ggctcaaact cggtcgaaca aggcagcggc
     2881 gcattggcgg gctcggtcgc atttcaaacc aaaaccgccg atgatgttat cggggaaggc
     2941 aggcagtggg gcattcagag taaaaccgcc tattccggca aaaaccgggg gcttacccaa
     3001 tccatcgcgc tggcggggcg catcggcggt gcggaggctt tgctgatcca cacgggtcgg
     3061 cgcgcggggg aaatccgcgc ccacgaagat gccggacgcg gcgttcagag ctttaacagg
     3121 ctggtgccgg ttgaggacga caaccaatac gctcatttcg tggtcgaaga agaatgcgaa
     3181 agcaaaaatt acgaaacgtg taaagcgaat ccgaaaaaag atgttgttgg caaagacgaa
     3241 cgtcaaacgg tttccacccg agactacacg ggccccaacc gcttcctcgc cgatccgctt
     3301 tcatacgaaa gccggtcgtg gctgttccgc ccgggttttc gttttgagaa taagcgacac
     3361 tatatcggcg gcatactcga acgcacgcaa caaactttcg acacgcgcga tatgacggtt
     3421 ccggcattcc tgaccaaggc ggtttttgat gaaaataaaa aacaggcggg ttctttgtcc
     3481 ggcaacggca aatacgcggg cgaccacaaa tacggcggtc tgtttactaa cggcgaaaac
     3541 ggtgcgctgg tgggcgcgga atacggtaca ggcgtgtttt acgacgagac gcacaccaaa
     3601 agccgctacg gtttggaata tgtctatacc aatgccgata aagacacttg ggcggattat
     3661 gcccgcctct cttacgaccg gcagggtatc ggtttggaca atcattttca gcagacgcac
     3721 tgttctgccg acggttcgga caaatattgc cgcccgagtg ccgacaagcc gttttcctac
     3781 tacaaatccg accgcgtgat ttacggggaa agccacaggc tcttgcaggc ggcatttaaa
     3841 aaatccttcg ataccgccaa aatccgccac aacctgagcg tgaatctcgg ttttgaccgc
     3901 tttggctcta atctccacca tcaggattat tattatcaaa atgccaaccg cgcctattcg
     3961 tcgaaaatac ccactcaaaa cggcaatcaa aacatcagcc ccaacggcag ccaagacaaa
     4021 ccctattggg tcagcatagg cggggggaat gtggttacgg ggcaaatctg ccgctcgggc
     4081 aacaatactt atacggactg cacgccgcgc agcatcaacg gcaaaagcta ttacgcggca
     4141 gttcgggaca atgtccgttt gggcaggtgg gcggatgtcg gcgcgggctt gcgctacgac
     4201 taccgcagca cgcattcgga cgacggcagc gtttccaccg gaacgcaccg caccctgtcc
     4261 tggaacgcag gcatcgtcct caaacctgcc gactggctgg atttgactta ccgcacttca
     4321 accggcttcc gcctgccttc gtttgcggaa atgtacggct ggcggtcggg cgataaaata
     4381 aaagccgtca aaatcgatcc ggaaaaatcg ttcaacaaag aagctggcat cgtgtttaaa
     4441 ggcgatttcg gcaacttgga ggcaagttgg ttcaacaatg cctaccgcga tttgattgtc
     4501 cggggttatg aagcgcaaat taaaaacggc aaagaagaag ccaaaggcga cccagcttac
     4561 ctcaatgccc aaagcgcgcg gattaccggc atcaatattt tgggcaaaat cgattggaac
     4621 ggcgtatggg ataaattgcc cgaaggttgg tattctacat ttgcctataa tcgtgtccgt
     4681 gtccgcgaca tcaaaaaacg cgcagaccgc accgatattc aatcacacct gtttgatgcc
     4741 atccaaccct cgcgctatgt cgtcggcttg ggctatgacc aaccggaagg caaatggggt
     4801 gtgaacggta tgctgactta ttccaaagcc aaggaaatca cagagttgtt gggcagccgg
     4861 gctttgctca acggcaacag ccgcaataca aaagccaccg cgcgccgtac ccgcccttgg
     4921 tatattgtgg atgtgtccgg ttattacacg attaaaaaac acttcaccct ccgtgcgggc
     4981 gtgtacaacc ttctcaacta ccgctatgtt acttgggaaa atgtgcggca aactgccggc
     5041 ggcgcagtca accaacacaa aaatgtcggc gtttacaacc gatatgccgc ccccggccga
     5101 aactacacat ttagcttgga aatgaagttc taaacgtcca aacgccgcaa atgccgtctg
     5161 aaaggcttca gacggcattt tttacacaat tcccaccatt ttccatcatc cccgatacac
     5221 cgtaatctcg aa
//
LOCUS       DAXHPV010000139         5215 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.139, whole genome shotgun sequence.
ACCESSION   DAXHPV010000139 DAXHPV010000000
VERSION     DAXHPV010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5215)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5215)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5215
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.139"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            211..521
                     /locus_tag="ACFM6C_001690"
                     /pseudo
     CDS             211..521
                     /locus_tag="ACFM6C_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003684347.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            complement(578..1636)
                     /gene="trpD"
                     /locus_tag="ACFM6C_001691"
     CDS             complement(578..1636)
                     /gene="trpD"
                     /locus_tag="ACFM6C_001691"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HFC6159119.1"
                     /translation="MITPQQAIERLISNNELFYDEMTDLMRQMMSGKVPPEQIAAILT
                     GLRIKVETVSEITAAAAVMREFATKVPLENAEGLVDIVGTGGDGAKTFNISTTSMFVA
                     AAAGAKVAKHGGRSVSSSSGAADVMEQMGANLNLTPEQIAQSISQTGIGFMFAPNHHS
                     AMRYVAPVRRSLGFRSIFNILGPLTNPAGAPNQLLGVFHTDLCGILSRVLQQLGSKHV
                     LVVCGEGGLDEITLTGKTRVAELKDGKISEYDIRPEDFGIETRRNLDEIKVANTQESL
                     LKMNEVLEGREGAARDIVLLNTAAALYAGNVAASLSDGISAAREAIDSGRAKSKKEEF
                     VGFQPQQRCHFLGKMELG"
     gene            complement(1700..2290)
                     /locus_tag="ACFM6C_001692"
     CDS             complement(1700..2290)
                     /locus_tag="ACFM6C_001692"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046820 - 4-amino-4-deoxychorismate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HFC6159120.1"
                     /translation="MLLFIDNYDSFTYNIVQYFAELGQEVAVRRNDDITLEEIEALNP
                     QYLVIGPGPCSPKEAGISVAAMRHFAGRLPIMGVCLGHQTIGEAFGGRIVRAKTLMHG
                     KVSPVSHSGKGMFMGLPNPVTCTRYHSLVIERGTLPECLEITAWTEDGEIMGVRHKEY
                     AVEGVQFHPEALLTEHGHDMLNNFLVEFQNFKPQKI"
     gene            2712..5004
                     /gene="znuD"
                     /locus_tag="ACFM6C_001693"
                     /gene_synonym="tdfJ"
                     /pseudo
     CDS             2712..5004
                     /gene="znuD"
                     /locus_tag="ACFM6C_001693"
                     /gene_synonym="tdfJ"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_118820519.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent zinc receptor ZnuD"
BASE COUNT         1339 a         1470 c         1209 g         1197 t
ORIGIN      
        1 gttagataag gggggaaggt ttgaagcggt tgccggcttc ctgccgtccg ccggtgcgtc
       61 cgtcatcacg ccgacaaccg cctttgtcat cccttgctta tcttccatgg tgcgaatcct
      121 caaaaacggg caaaaaaaaa gccctgttac ttgtagaaag taaaggacgt taatttttgt
      181 taatcgtccc ttcttaggga cgcaatatat aaggtttata ccgtcgttgt tcctaatgcg
      241 caatcagcga cattgttgcc aattatccga aagaaagtta agcctgatgg cattgtatac
      301 acggatacct ttcgtagtta tgatgtgctt gatattagtg aatttagcca tttacgtaag
      361 tttaacggca ttcccaaaga gcatttgggg ctgcatttaa agaaatgcca atggcatttt
      421 aaatagaatc tcaaattcag attttaagac aattagttaa tgggaatttg gtctggttat
      481 ctagtacagc cccaagtttt tatataaaaa cagtttggta agttctcttc gtgaagtgct
      541 tatgttttgc cacaaaagtt ccataatcat ggcggcatca cccaagctcc atctttccaa
      601 gaaaatggca tctttgttgt ggttgaaaac cgacaaactc ctcttttttc gatttggccc
      661 tgcctgaatc gatggcttcc cgtgcggcag atatgccgtc tgaaagcgaa gcagcgacat
      721 ttccggcata cagggcggcg gcggtgttga gcaatacgat atcgcgcgca gccccttctc
      781 ttccttccag cacctcattc attttcaaca aagattcctg agtattggca actttgattt
      841 catccaaatt gcggcgggtt tcgataccga aatcttctgg gcggatgtcg tattcgctga
      901 tttttccgtc tttgagctcg gcaacgcgtg ttttgcccgt cagtgtaatt tcatccaaac
      961 cgccctcccc gcaaacaacc aaaacatgct tggagccgag ctgttgcaat actctggaaa
     1021 ggatgccgca caaatcggtg tggaacacgc ccaaaagctg gttcggcgcg cccgcaggat
     1081 tcgttaacgg acccaatatg ttgaaaatac ttcggaaacc gagcgaacgg cgcaccgggg
     1141 cgacatagcg catagcgctg tggtgattgg gtgcgaacat aaaccctata ccggtctggc
     1201 tgatactttg ggcaatctgt tcgggagtca ggttgaggtt tgcgcccatt tgctccatca
     1261 cgtcagccgc accgctggag gaagagaccg accggcctcc gtgtttggca accttcgcgc
     1321 ctgccgctgc ggcaacaaac atcgaagtcg tcgaaatatt gaaggttttg gcaccatccc
     1381 cgcccgtacc gacgatatcg accagcccct ctgcattctc cagcggcact tttgtcgcaa
     1441 actcgcgcat gacggcggcg gcggcggtaa tttcggaaac ggtttcaacc ttgatacgca
     1501 atcctgtcaa aatcgccgca atttgttcgg gcggcacttt tccgctcatc atttggcgca
     1561 tcaagtcggt catttcatcg taaaacaact cattattgct gattaatcgt tcgatagcct
     1621 gttgcggtgt aatcattttt tgtcctccgt tcaatattcg gacgaaaatg ccgtctgaag
     1681 ggcttcagac ggcatcacgt cagatttttt gcggtttgaa gttttgaaat tcaactaaaa
     1741 aattgtttaa catatcatgt ccgtgttcgg tcagcagagc ttcagggtgg aattgtaccc
     1801 cctcgacggc atattcctta tggcgcacgc ccataatctc gccgtcttcc gtccatgccg
     1861 tgatttccaa acattcgggc agtgtgccgc gttcaataac gaggctgtga taacgcgtac
     1921 aggtaaccgg attgggcaac cccataaaca tacccttgcc cgaatgggac acgggcgaca
     1981 ccttgccgtg catcagcgtt ttggcgcgga ctatcctgcc gccgaacgcc tcgcctatcg
     2041 tctgatgccc gagacacacg cccataatcg gcagccggcc ggcaaaatgg cgcatcgccg
     2101 ccacggaaat ccccgcttct ttgggcgaac acggaccggg gccgataacg agatattgcg
     2161 gattcaatgc ctcgatttct tccaatgtaa tatcatcgtt gcggcgcacg gcgacttcct
     2221 gccccaattc agcgaaatac tggacgatgt tgtaagtaaa actgtcgtaa ttgtcgataa
     2281 acaaaagcat tttgtgatta acctattgat ttataatttg tttgttatta actgcatttc
     2341 cgataccccc atccataccc tcttatatct tagcgtgccc gatgcaccct cgtgaacctg
     2401 gcgcagagcc tcgcgttctg acaagtacgc cattttgcca ccttttcgac cgttcgggaa
     2461 cgtaccgttt ttatgcactc ataaattttg gttatcccgc agccgaacat agtgggcaaa
     2521 cacagcggaa tctgcgtcaa catcaaccgc gcccccgaat gacggcggat acaaatgaac
     2581 accgcccgat gccgcaaccg tgtcatttga aaaacttttg cctatgccct ctgagtgttc
     2641 tcaaaatctt atgatataaa aaatgtaatg ttatataata acaaactttt gaaatgcgac
     2701 gagaagccaa aatggcacaa actacactca aacccattgt tttatcaatt cttttaatca
     2761 acacacccct cctctcccaa gcgcatggaa ctgagcaatc agtgggcttg gaaacggtca
     2821 gcgtcgtcgg caaaagccgt ccgcgcgcca catccgggct gctgcacact tcgaccgcct
     2881 ccgacaaaat catcagcggc gacaccttgc gacaaaaagc cgtcaacttg ggcgatgctt
     2941 tggacggcgt gccgggcatt cacgcctcgc aatacggcgg cggcgcgtcc gctcccgtta
     3001 ttcgcggtca aacaggcagg cggattaaag tgttgaacca tcacggcgaa acaggcgata
     3061 tggcggattt ttcgcccgat cacgccatta tggtagatac cgccttgtcg caacaggtcg
     3121 aaatcctgcg cgggccggtt acgctcttgt acagctcggg caatgtggcg gggctggtcg
     3181 atgttgccga tggcaaaatc cccgaaaaaa tgcctgaaaa cggcgtatcg ggcgaactcg
     3241 gattgcgttt gagcagcggc aatctggaaa aactcacgtc cggcggcatc aatatcggtt
     3301 tgggcaaaaa ctttgtattg cacacggaag ggctgtaccg caaatcgggg gattacgccg
     3361 taccgcgtta ccgcaatctg aaacgcctgc ccgacagcca cgccgattcg caaacgggca
     3421 gcatcgggct gtcttgggtt ggcgaaaaag gttttatcgg cgtagcgtac agcgaccgtc
     3481 gcgaccaata tggtctgcct gcccacagcc acgaatacga tgattgccac gccgacatca
     3541 tctggcaaaa gagcttgatt aacaaacgct atttacagct ttatccgcac ctgttgaccg
     3601 aagaagacat cgattacgac aatccgggct tgagctgcgg cttccacgac gacgataatg
     3661 cacacgcaca cacccacagc ggcagaccgt ggatagacct gcgcaacaaa cgctacgaac
     3721 tccgtgccga atggaagcaa ccgttccccg gttttgaagc cctgcgcgta tacttgaacc
     3781 gcaacgacta ccgccacgac gaaaaagcag gcgatgcggt cgaaaacttt tttaacaacc
     3841 aaacgcaaaa cgcccgcatc gagttgcgcc accaacccat aggccgtctg aaaggcagct
     3901 ggggcgtgca atatttacaa caaaaatcca gtgctttatc tgccacatcc gaagcggtca
     3961 aacaaccgat gctgcttgac aataaagtgc aacattacag ctttttcggt gtagaacagg
     4021 caaactggga caacttcacg cttgaaggcg gcgtacgcgt ggaaaaacaa aaagcctcca
     4081 tccgctacga taaagcattg attgatcggg aaaactacta caaccatccc ctgcccgacc
     4141 tcggcgcgca ccgccaaacc gcccgctcat tcgcactttc gggcaactgg tatttcacgc
     4201 cacaacacaa actcagcctg accgcctccc atcaggaacg cctcccatca ggaacgcctg
     4261 ccgtcaacgc aagagctgta cgcacacggc aaacacgtcg ccaccaacac ctttgaagtc
     4321 ggcaacaaac acctcaacaa agagcgttcc aacaatatcg aactcgcgct gggctacgaa
     4381 ggcgaccgct ggcaatacaa tctggcactc taccgcaacc gcttcggcaa ctacatttac
     4441 gcccaaacct taaacgacgg acgcggcccc aaatccatcg aagacgacag cgaaatgaag
     4501 ctcgtgcgct acaaccaatc cggtgcggac ttctacggcg cagaaggcga aatctacttc
     4561 aaaccgacac cgcgctaccg catcggcgtt tccggcgact atgtacgagg ccgtctgaaa
     4621 aacctgcctt ccctacccgg cagggaagat gcctacggca accgtccttt catcgcgcag
     4681 gacgaccaaa acgcccctcg cgttccggct gcgcgcctcg gcgtccacct gaaagcctcg
     4741 ctgaccgacc gcatcgatgc caatttggac tactaccgcg tgttcgccca aaacaaactc
     4801 gcccgctacg aaacgcgcac gcccggacac catatgctca acctcggcgc aaactaccgc
     4861 cgcaatacgc gctatggcga gtggaattgg tacgtcaaag ccgacaacct gctcaaccaa
     4921 tccgtttacg cccacagcag cttcctctct gatacgccgc aaatgggccg cagctttacc
     4981 ggcggcgtga acgtgaagtt ttaaaatcgg acaggcaaac aaaaaaggtt ttcagacggc
     5041 attctgaaaa ccttttttgt ttttaatcaa tttgttagga aatgtggcaa agacaaagaa
     5101 caaaccacta tgccatcatt cccattttct ttgtttcatc attcttgctt tcacgccgtc
     5161 attctcgcaa aagcagaaaa atcaaaagca gaaacccatc attcccgcgc aggcg
//
LOCUS       DAXHPV010000140         5188 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.140, whole genome shotgun sequence.
ACCESSION   DAXHPV010000140 DAXHPV010000000
VERSION     DAXHPV010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5188)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5188)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5188
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.140"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(53..427)
                     /locus_tag="ACFM6C_001694"
     CDS             complement(53..427)
                     /locus_tag="ACFM6C_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HFC6159121.1"
                     /translation="MIIQNEFNLYPSNMLPERFCYPEKYVRISNDTSLIPYIQPHNFH
                     WWFENYGTEGAEVTYIFRNSILPDLNLIPFASNGEWEAYFDGNDVTGNPRVIVINLDN
                     IENHEFFNSFEEWLELAIKDTW"
     gene            complement(424..552)
                     /locus_tag="ACFM6C_001695"
     CDS             complement(424..552)
                     /locus_tag="ACFM6C_001695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159122.1"
                     /translation="MPQTWGEAIQFRIKKQIENELAPPNWSTQFPNGSIYDPKVTK"
     gene            complement(600..956)
                     /locus_tag="ACFM6C_001696"
     CDS             complement(600..956)
                     /locus_tag="ACFM6C_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMP12 family DNA mimic protein"
                     /protein_id="HFC6159123.1"
                     /translation="MNEHNLLIFCLKDNVSISEYTEMIDWAYKNIQSETVVEITENQI
                     IEYQNRGLWRLVSEITDNWLFGPSEGDWLIDKESILAVKEKLQNSDFSTEPLVKNIIH
                     VLEYAIKNEKTVIFHF"
     gene            complement(961..1065)
                     /locus_tag="ACFM6C_001697"
     CDS             complement(961..1065)
                     /locus_tag="ACFM6C_001697"
                     /inference="COORDINATES: protein motif:HMM:NF018014.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159124.1"
                     /translation="MDDIRGIIQGAVNPLIYKVSKQKIIYNNKLISGT"
     gene            complement(1099..1443)
                     /locus_tag="ACFM6C_001698"
     CDS             complement(1099..1443)
                     /locus_tag="ACFM6C_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159125.1"
                     /translation="MNLENYENILIKLLFYHNNLVNEYSYFIENKNLFKIVSRTKTSK
                     GFFFTIEKPLNFLSKKTYFEFNFKYLHSGKERFGSFMCWINTNLMEFEGFFFNDLLPD
                     NMIINNFFEIND"
     gene            complement(1602..2003)
                     /locus_tag="ACFM6C_001699"
     CDS             complement(1602..2003)
                     /locus_tag="ACFM6C_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159126.1"
                     /translation="MKLKSLDFPTGYFYFDNAAINSDKVEVIAVGYRNTDKTIKIFIE
                     DVIHFRVVDESYFIDTFMDLISEDADRALLHENGGQSFFELLDECYAEWILKESYFPL
                     NREFFKYYIFMFEQTFIEIIGSSATYSIIEG"
     gene            complement(2007..2459)
                     /locus_tag="ACFM6C_001700"
     CDS             complement(2007..2459)
                     /locus_tag="ACFM6C_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159127.1"
                     /translation="MQTKALGTVDEIGDTVQQVGKQASGQKTSGGNPAIDSDPYSPSS
                     VAARIEAGKARSDLQIKDILSNTTQRSKTKGPAVQYDKVGDYNDALNDFNSLNVRNVQ
                     TRPNGTITGNLPDGRAVNARNDSSGGEPTLEITISNNRKIKIRYGNTR"
     gene            complement(2454..2747)
                     /locus_tag="ACFM6C_001701"
                     /pseudo
     CDS             complement(2454..2747)
                     /locus_tag="ACFM6C_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225727.1"
                     /note="MafB polymorphic toxins, described in Neisseria,
                     are fratricidal toxins the provide a competitive
                     advantage. Each MafB is accompanied by an immunity protein
                     MafI.; incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MafB family polymorphic toxin"
     gene            complement(2817..3134)
                     /locus_tag="ACFM6C_001702"
     CDS             complement(2817..3134)
                     /locus_tag="ACFM6C_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159128.1"
                     /translation="MKKNIFHNVSLYEIIFSDNGNTLTLSFTDTIEGNYFGYIKCSNI
                     LNFKLDTNNFVDYEDKEDSLFPLFIPEIELYKYQFYSEIIIDVGIIIKISAETINFEP
                     LGK"
     gene            complement(3131..3391)
                     /locus_tag="ACFM6C_001703"
     CDS             complement(3131..3391)
                     /locus_tag="ACFM6C_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HFC6159129.1"
                     /translation="MRPTTRDELRQALQEQGFRRTGSDEAQYETWKGPDGVKIDIRPN
                     GEVIRTQRVPRTDGVQGKYPQRQNYEGNPLPNNRHHSGYFIK"
     gene            complement(3389..3733)
                     /locus_tag="ACFM6C_001704"
                     /pseudo
     CDS             complement(3389..3733)
                     /locus_tag="ACFM6C_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225727.1"
                     /note="MafB polymorphic toxins, described in Neisseria,
                     are fratricidal toxins the provide a competitive
                     advantage. Each MafB is accompanied by an immunity protein
                     MafI.; incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MafB family polymorphic toxin"
     gene            complement(4159..4503)
                     /locus_tag="ACFM6C_001705"
     CDS             complement(4159..4503)
                     /locus_tag="ACFM6C_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159130.1"
                     /translation="MIIEHNGNIHKIARMTGNKNNFLEIILSDIHENIKIKPLTIKVK
                     GENVINILPEEVSFYVKQGVDLIYEKYKRKFFISEISFCQSDSRPSSIYAFLTFHLLE
                     DIIKNESPSNYT"
     gene            complement(4541..4864)
                     /locus_tag="ACFM6C_001706"
     CDS             complement(4541..4864)
                     /locus_tag="ACFM6C_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159131.1"
                     /translation="MFLDDVNVFLDDLNTNPITDEWYMSNFADKHIKILESYETFDIL
                     KQFVDYMIEEYDEKSEYEIMEILRQLKYQADTNEKFYTNTQKQKIVELYKQEISQDIL
                     NEIFR"
     gene            complement(4867..>5188)
                     /locus_tag="ACFM6C_001707"
     CDS             complement(4867..>5188)
                     /locus_tag="ACFM6C_001707"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159132.1"
                     /translation="PAVRPMQTVDGEMAGGNKSLKIGTQSVEKSTGRTIPNNLKEQLA
                     MEEVKANPQGKTPARIPPMSDTKNGWLAKDGWVKRVQNVNKIEIHYIENSRTGEKTDF
                     KFKD"
BASE COUNT         1523 a          982 c          782 g         1901 t
ORIGIN      
        1 cgagtttatc ctagttatcc aggatggtcc catctctttt atagatagct gcttaccaag
       61 tatccttaat tgctaattca agccactctt caaaactatt aaaaaattca tggttttcta
      121 tattatctaa attaatgaca ataaccctag gatttcctgt tacatcatta ccatcaaaat
      181 aagcttccca ttctccatta ctagcgaatg ggataagatt taaatcaggc aggatagaat
      241 ttctaaatat ataagttact tctgcccctt ctgttccata attctcaaac caccagtgaa
      301 aattatgtgg ctgaatataa ggtattaaag atgtatcgtt agagatacga acatactttt
      361 caggataaca aaacctttca ggaagcatat tactaggata taaattaaat tcattttgaa
      421 taatcatttc gttaccttag gatcataaat actaccatta ggaaactggg tagaccaatt
      481 tggtggtgct agttcatttt caatttgttt tttaattcta aattgaatag cttctcccca
      541 tgtttgcggc atctaatgct gcttgctctg catcaatatt actaaaaatt ggattagtct
      601 caaaaatgaa aaattactgt tttttcattt tttatagcat attcaagtac atgaataata
      661 tttttcacta agggctctgt agaaaaatct gaattttgta atttttcttt tacagccaaa
      721 atactttcct tatctattag ccaatccccc tcacttggtc caaataacca attatcggta
      781 atttcagaaa caagtctcca taatccacga ttttgatatt caataatttg attttccgta
      841 atttctacaa ctgtttcaga ttgaatgttt ttataagccc aatcaatcat ttcagtatat
      901 tcactaattg aaacattgtc ttttaaacag aaaattaaca ggttgtgttc attcatttgt
      961 ctaagttcct gatatgagtt tgttgttgta aataatcttt tgcttgctta ccttgtaaat
     1021 taaaggatta accgcacctt ggatgatgcc gcgaatatca tccatacggt taccccacca
     1081 atttttattg gtgtatcgtt aatcatttat ttcaaaaaag ttatttatta tcatattatc
     1141 agggagcagg tcgttaaaaa aaaacccctc aaattccatt aaattagtat ttatccagca
     1201 cataaacgaa ccaaagcgtt ctttccctga gtgtaaatat ttaaaattaa actcaaaata
     1261 agtttttttg cttagaaaat ttaatggttt ttctatagtg aaaaaaaagc ccttactcgt
     1321 tttcgttcga gatactattt taaataaatt tttattttca ataaaataag aatattcatt
     1381 tactaagttg ttatgataaa aaagtaattt tattaaaatg ttttcataat tttctaggtt
     1441 catttctagc tcaatttaaa atgatttcat tgttgccgta ccaatgcgaa atttaccatc
     1501 aacaaaattt cccttcactg atacaggtac accatcaact tgggtagttt tattttcagg
     1561 ctgcctgaaa gaaagatagg caacttatta ctcatcttat gctagccctc aataattgaa
     1621 tacgttgcac tagaaccaat tatttctatg aatgtttgct caaacataaa aatatagtat
     1681 ttaaagaatt ctctattcaa aggaaaataa ctttctttca atatccattc cgcataacac
     1741 tcatcaagaa gttcaaaaaa agattgacca ccattttcat gaagcaaagc tctatctgca
     1801 tcttccgaaa ttaaatccat aaaagtatct ataaaatacg attcatcaac aaccctaaaa
     1861 tgaataacat cttcaataaa aatttttatg gttttatccg tatttctata accaactgct
     1921 ataacttcta ctttatcaga gtttattgct gcattatcaa aatagaaata gccagttggg
     1981 aaatctaagc tttttaattt cataatttat cgtgtatttc catatctgat ttttattttt
     2041 cggttattac taattgttat ttcaagtgtt ggttctccac cactactatc attacgagca
     2101 ttaaccgcac gcccatcagg taaattgccc gttatcgttc cattaggacg tgtttgtaca
     2161 tttcgaacat tcagactatt aaaatcattt agtgcgtcat tgtaatcccc cactttatca
     2221 tactgaacag cgggaccttt tgttttactc ctttgagtag tattgctcaa aatgtctttg
     2281 atttgtaaat cactgcgcgc cttaccggct tctatgcgag ctgccacact actcgggcta
     2341 taggggtcgc tatcaatcgc aggattacca ccgctggttt tttgtccgct agcctgtttc
     2401 ccaacctgct gtactgtatc gccaatttca tctaccgtac ctaacgcctt agtctgcata
     2461 tggcgaacag caggtttttt atagccggta tttttaaccc aatcccattt ggtcgggtta
     2521 agttctactt ttttacctct ccaaaccgta cctgcggcct ctgctacggc aagggcagtt
     2581 tgggctgttg ctgttatatt cggatgggca tcagcccatt gtctggcgga attgatgccg
     2641 tcttttaccg caaaagcact gtcctgtaat atgctcgcgg cagcaagttg tgcttccggg
     2701 cttaattttc ctaaattatt aataccttgt agagtctgct gcgcagagat gtagcaactg
     2761 tatttttacc ccgtcgggta aaaatacagt tgctacggct gctgggaaag cagttactat
     2821 tttcccagtg gctcaaaatt aattgtttca gcagatattt ttataataat ccctacatca
     2881 ataataattt cactataaaa ttggtattta tatagctcta tttcgggtat aaacaaggga
     2941 aacaagctat cttccttatc ctcataatct acgaaattat ttgtatctaa tttaaaattc
     3001 aaaatattac tgcatttgat atatccgaaa taattacctt caattgtatc tgtaaaagat
     3061 aatgtaaggg tatttccatt atcggaaaag attatttcat aaaggcttac attgtgaaaa
     3121 atattttttt tcatttgata aaatatccag aatgatgacg attatttggc aatggattgc
     3181 cttcataatt ttgtcgttgc ggatattttc cctgtacacc atcggttcgc ggcactcttt
     3241 gggttcttat aacctctcca tttggacgaa tatctatttt cacgccatca ggacctttcc
     3301 atgtttcata ttgagcctca tctgaaccag tacgtctaaa accttgttct tgcaatgctt
     3361 gacgtaattc atctcgcgta gttggtctga tagatttaac aactggcttg tttcctcctg
     3421 ccatctcacc gtccaacgtc tgcatagggc gggcagcagg tgttttatag ccgttatttt
     3481 taacccaatc ccatttagtc gggttaagtt ctactttttt acctctccaa accgtacctg
     3541 cggcctctgc tacggcaagg gcagtttggg cagtagctgt aatgttcgga tgggcatcag
     3601 cccattgtct ggcggaattg atgccgtctt ttaccgcaaa agcactgtcc tgtaataggc
     3661 tcgcggcagc aagttgtgct tccggactta attttcctaa atcattaata ccttgtaaag
     3721 tttgctgcgc agagatgtag gtcggatatt tgtatccgac aaaaatattt gacgcatcta
     3781 tcgtttccga aatgccgctg ttggaaaatg tcggattcga gaatccgacc tacggctatt
     3841 tcgtttaagt cataaatagc cattcatgtt ccttctgaat ttgcttttgc tatccttaga
     3901 accaatcata taaacattat catcattaat taatgttcta agtttatgaa gcggtcaaat
     3961 ctgtcaaact accagagatg aagcatatcc tcctggaagt aattctgttc gtgctgtttc
     4021 catatcttct ttgccatcat cagttacttc tctgtctaaa taaaatctta cgataagttt
     4081 ttgtctaatt tcatcaaatt ctgccgtaat taatcttata ttgatatgaa tacacggttc
     4141 atacctgcta ttagccagtc aggtgtagtt ggatggggat tcatttttaa taatatcttc
     4201 aagcaagtga aatgtaagaa aagcgtagat acttgaaggc cggctatctg attggcaaaa
     4261 agaaatttcg gagataaaga atttccgttt atatttttca taaattaaat caacaccttg
     4321 ttttacataa aaactaactt cctcaggaag gatatttata acattctctc cttttacttt
     4381 tatagttaat ggtttgattt ttatgttttc atgaatatct gataggatta tttctaaaaa
     4441 attattttta tttccagtca ttctggctat tttatgtata tttccattgt gttcgattat
     4501 cattttattt tttccaagga tttccttcta tattgatagt ttatctaaag atttcattta
     4561 aaatatcctg actaatttct tgtttatata attctacaat tttctgtttc tgtgtatttg
     4621 tataaaattt ttcgttggta tctgcttgat attttaattg tctcaatatt tccatgattt
     4681 catattctga tttttcatca tattcttcaa tcatgtaatc aacaaattgt tttagaatat
     4741 caaaggtttc gtaactttcc aaaattttaa tatgtttatc ggcaaaattg gacatatacc
     4801 attcgtcagt gattggatta gtatttaaat catctaaaaa aacatttaca tcatctaaaa
     4861 acatgactaa tccttaaact taaaatctgt tttctcaccg gttcttgagt tttcaatgta
     4921 atgtatttca attttgttta cgttttgaac acgcttaacc caaccgtctt ttgctaacca
     4981 accattttta gtatcggaca taggaggtat tctcgcagga gttttgccct gtgggtttgc
     5041 cttaacttct tccattgcta attgttcctt taaattatta ggtattgtac gaccggttga
     5101 tttttcaaca gattgtgtcc ctatttttaa tgatttgttt cccccagcca tttccccgtc
     5161 tacagtctgc atagggcgaa cagcaggt
//
LOCUS       DAXHPV010000141         5157 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.141, whole genome shotgun sequence.
ACCESSION   DAXHPV010000141 DAXHPV010000000
VERSION     DAXHPV010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5157)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5157)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5157
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.141"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(181..723)
                     /locus_tag="ACFM6C_001708"
     CDS             complement(181..723)
                     /locus_tag="ACFM6C_001708"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159133.1"
                     /translation="MLLKVVPERTVSADAKTRDPMWDNAALQTSEGVNFIARFLGFFS
                     DGEYRYVDVLQPNHSDIIRYSGKDFPINQTLNHIHPARYAVTFENNVDSKLRRHWVAG
                     ATIRIIDRQTDEVIAKKTIYVFEKGLDGTGGARMPWKFAILCNKERLTSSEPLSDFVL
                     SVLKPYILRPLYIASLRRDD"
     gene            complement(714..950)
                     /locus_tag="ACFM6C_001709"
     CDS             complement(714..950)
                     /locus_tag="ACFM6C_001709"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159134.1"
                     /translation="MPTKNLGKILSGSLTAAAILMLFVWIIPKQFGPSKEEIQAQEEW
                     DRKYKEAEAVFNEQCKTAGERFTRRRTMWKGLCC"
     gene            1292..2719
                     /locus_tag="ACFM6C_001710"
     CDS             1292..2719
                     /locus_tag="ACFM6C_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0030253 - protein secretion by the type I
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HFC6159135.1"
                     /translation="MFFSALKSFLSRYITVWRNVWAVRDQLEPPKRTAEEQAFLPAHL
                     ELTDTPVSAAPKWAARFIMAFALLALLWSWFGKIDIVAAASGKTVSGGRSKTIQPLET
                     AVVKAVHVRDGQHVKQGETLAELEAVGTDSDVVQSEQALQAAQLSKLRYEAVLAALES
                     RTVPHIDMAQARSLGLYDADVQSAQVLAQHQYQAWAAQDAQLQSALRGHQAELQSAKA
                     QEQKLVSVGAIEQQKTADYRRLRADNFISEHAFLEQQSKSVSNWNDLESTRGQMRQIQ
                     AAIAQAEQSRVLNTQNLKRDTLDALRQANEQIDQYRGQTDKAKQRQQLMTIQSPADGT
                     VQELATYTVGGVVQAAQKMMVVAPDDDKMDVEVLVLNKDIGFVEQGQDAVVKIESFPY
                     TRYGYLTGKVKSVSHDAVSHEQLGLVYTAVVSLDKHTLNIDGKAVNLTAGMNVTAEIK
                     TGKRRVLDYLLSPLQTKLDESFRER"
     gene            2788..4191
                     /locus_tag="ACFM6C_001711"
     CDS             2788..4191
                     /locus_tag="ACFM6C_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HFC6159136.1"
                     /translation="MTLLNLMIMQDYGISVCLTLTPYLQHELFSAMKSYFSKYILPVS
                     LFTLPLSLSPSVSAFTLPEAWRAAQQHSADFQASHYQRDAVRARQQQAKAAFLPHVSA
                     NASYQRQPPSISSTRETQGWSVQVGQTLFDAAKFAQYRQSRFDTQAAEQRFDAAREEL
                     LLKVAESYFNVLLSRDTVAAHAAEKEAYAQQVRQAQALFNKGAATALDIHEAKAGYDN
                     ALAQEIAVLAEKQTYENQLNDYTGLDSKQIEAIDTANLLARYLPKLERYSLDEWQRIA
                     LSNNHEYRMQQLALQSSGQALRAAQNSRYPTVSAHVGYQNNLYTSSAQNNDYHYRGKG
                     MSVGVQLNLPLYTGGELSGKIHEAEAQYGAAEAQLTATERHIKLAVRQAYTESGAARY
                     QIMAQERVLESSRLKLKSTETGQQYGIRNRLEVIRARQEVAQAEQKLAQARYKFMLAY
                     LRLVKESGLGLETVFAE"
     gene            complement(4355..5142)
                     /locus_tag="ACFM6C_001712"
     CDS             complement(join(4355..4887,4887..5142))
                     /locus_tag="ACFM6C_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611222.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HFC6159137.1"
                     /translation="MSQTAATFNLSRNTLYLWIRLKKQTGSLKHQVTGLNAVKSDRQK
                     PAQYVGQHPDAYLHEIAKHFDCTAATVCYALKQMGITRKKRPTTYKEQDPAKVTHYLT
                     QPAEFSDYQRVYLDETGFDRYLFRPYTRSLKGQIVKAQISGKRYQRLSLVSAQVGNRL
                     IAPMVYQNTMIGVFFEAWFQQCLLPALTQKSVIILDNARFHRMGVLREMAEKLGHKVL
                     PLAPYLPELNPIEKVWANIKRYLRTVLSDYARFDDALLSYFDFN"
BASE COUNT         1300 a         1243 c         1340 g         1274 t
ORIGIN      
        1 tgttagataa ggggggaagg tttgaagcgg ttgccggctt cctgccgtcc gccggtgcgt
       61 ccgtcatcac gccgacaacc gcctttgtca tcccttgctt atcttccatg gtgcgaatcc
      121 tcaaaaacgg gcaaaaaaaa agccctgtta cttgtagaaa gtaaaggacg ttaatttttg
      181 ttaatcgtcc cttcttaggg acgcaatata taagggacgc aatatataag gttttaaaac
      241 gctaagaaca aaatccgata acggctctga agaagtaagt ctttctttat tgcacaagat
      301 agcaaacttc cacggcattc tcgccccacc cgtgccgtcc aagccttttt caaagacata
      361 gatggttttc ttggcaatca cttcgtcagt ttggcggtcg ataatccgta tggtcgcacc
      421 tgccacccag tgcctgcgca gcttggagtc gacattgttt tcgaacgtta ccgcataacg
      481 ggcggggtgt atatgattaa gtgtttgatt tatcggaaaa tctttacctg aataccgaat
      541 aatatcggaa tggttgggtt gcaggacatc cacatagcgg tattccccat cgctaaaaaa
      601 tcctaggaaa cgagcaataa aatttacgcc ttcgctggtc tgtaaagccg cattgtccca
      661 catcgggtct ctggtttttg catctgccga aacggtacgc tcaggtacta ccttcaacag
      721 cataatccct tccacattgt ccgccgtctg gtaaatcttt cccccgccgt tttgcattgt
      781 tcgttaaaca cggcttcggc ttctttgtat tttctgtccc actcttcttg tgcctgtatt
      841 tcttctttgc tcgggccgaa ttgtttggga ataatccaaa caaacagcat caggatagcg
      901 gcggcggtca ggctgcctga aaggattttg ccgaggtttt ttgtaggcaa agcggacgag
      961 aaaccaaagc aacagcagca tggtgtccca atagccgatt gcgaatagga tgaccaaacc
     1021 ttctaggaaa tggcgtaaat cgtttgtggt aaacatgggt agttcctgtg gttaaatgtg
     1081 caggctgctt tttgccgaac cttgccgcat ctcaaaagca gcctgcgctt cagcgttgcg
     1141 ttacgcagta aaataatgaa tatttgtaac gacttgggta ttttttgtca atattcccgc
     1201 ctttccctta acagctgccg cgctttccgt taaaattcct ttacatattt atattgtttc
     1261 ctgtttctat attgccaagg ttatacccgt tatgtttttc tccgccctga aatcctttct
     1321 ttctcgctac attactgtat ggcgcaatgt ttgggcggtg cgcgaccagt tggaaccgcc
     1381 caaacgcacg gcggaagaac aggcgttttt gcccgcgcat ttggaactga ccgatacgcc
     1441 ggtctctgcc gctccgaaat gggcggcgcg ttttattatg gcgtttgcgc ttttggcttt
     1501 gttgtggtcc tggttcggca aaatcgatat tgtggcggcg gcttcgggca aaacggtgtc
     1561 gggcgggcgc agcaaaacca tccagccgct ggaaacggcg gtggttaagg cggtacatgt
     1621 gcgcgacggg cagcatgtga aacagggaga aacgctggcg gaactggagg ctgtgggaac
     1681 agacagcgat gtggtgcagt cggagcaggc tttgcaggct gcccaattgt ccaaactgcg
     1741 ttatgaagca gtattggcgg cattggaaag ccgtaccgtg ccgcatatcg atatggcgca
     1801 agcacggtct ttaggtctct acgatgccga tgtgcaatcg gcgcaggtgt tggcgcagca
     1861 ccagtatcag gcatgggcgg cgcaggatgc gcaattgcag tcggctttgc gcggccatca
     1921 ggcggaattg cagtcggcca aggcgcagga gcagaagctg gtttcggtgg gggcgatcga
     1981 gcagcagaaa acagcagact accgccgttt gcgggccgac aattttattt cggaacatgc
     2041 gtttttggag cagcagagca aatcggtcag caattggaac gatttggaaa gtacgcgcgg
     2101 tcagatgagg cagattcagg cggccattgc acaggcggag cagagtcggg tgctgaatac
     2161 gcagaacctg aaacgcgata cgctggatgc gctgcgccag gcaaacgaac agattgacca
     2221 ataccgcggc caaacggata aggcaaagca gcggcagcag ctgatgacaa tacagtcgcc
     2281 tgcggacggc acggtgcagg aattggccac ctatacggtg ggcggtgtgg tgcaggctgc
     2341 ccaaaaaatg atggtggttg cgcccgatga cgacaaaatg gacgtggaag ttttggtatt
     2401 gaacaaagac atcggttttg tggaacaggg acaggatgcg gtggtgaaga ttgagagttt
     2461 tccctatacg cgctacggtt atctgacggg caaggtgaaa agtgtcagcc atgatgcggt
     2521 aagccacgaa cagttgggct tggtttatac ggcggtggtg tcgctggaca aacatacctt
     2581 gaatattgac ggcaaagcag tgaatctgac ggcgggcatg aatgtcacgg cggagattaa
     2641 aacgggtaaa cggcgggtgc tggattatct gttaagcccg ctgcaaacca aattggacga
     2701 aagctttagg gagcgatagg cggatccata ctgggcattt gttatccgcc ggttcggaca
     2761 tgcagactgc ctgaaaccat tgcccggatg acattgctca atctaatgat aatgcaagat
     2821 tacggtattt ccgtttgcct gacactgacg ccctatttgc aacatgaact attttcggct
     2881 atgaaatcct atttttccaa atatatccta cccgtttcac tttttacctt gccactatcc
     2941 ctttccccat ccgtttcggc ttttacgctg cctgaagcat ggcgggcggc gcagcaacat
     3001 tcggctgatt ttcaagcgtc ccattaccag cgtgatgcag tgcgcgcacg gcaacaacaa
     3061 gccaaggccg cattccttcc ccatgtatcc gccaatgcca gctaccagcg ccagccgcca
     3121 tcgatttctt ccacccgcga aacacaggga tggagcgtgc aggtgggaca aaccttattt
     3181 gacgctgcca aatttgcaca ataccgccaa agcaggttcg atacgcaggc tgcagaacag
     3241 cgtttcgatg cggcacgcga agaattgctg ttgaaagttg ccgaaagtta tttcaacgtt
     3301 ttactcagcc gagacaccgt tgccgcccat gcggcggaaa aagaggctta tgcccagcag
     3361 gtaaggcagg cgcaggcttt attcaataaa ggtgctgcca ccgcgctgga tattcacgaa
     3421 gccaaagccg gttacgacaa tgccctggcc caagaaatcg ccgtattggc tgagaaacaa
     3481 acctatgaaa accagttgaa cgactacacc ggcctggaca gcaaacaaat cgaggccata
     3541 gataccgcca acctgttggc acgctatctg cccaagctgg aacgttacag tctggatgaa
     3601 tggcagcgca ttgccttatc caacaatcat gaataccgga tgcagcagct tgccctgcaa
     3661 agcagcggac aggcgcttcg ggcagcacag aacagccgct atcccaccgt ttctgcccat
     3721 gtcggctatc agaataacct ctacacttca tctgcgcaga ataatgacta ccactatcgg
     3781 ggcaaaggga tgagcgtcgg cgtacagttg aatttgccgc tttataccgg cggagaattg
     3841 tcgggcaaaa tccatgaagc cgaagcgcaa tacggggccg ccgaagcaca gctgaccgca
     3901 accgagcggc acatcaaact cgccgtacgc caggcttata ccgaaagcgg tgcggcgcgt
     3961 taccaaatca tggcgcaaga acgggttttg gaaagcagcc gtttgaaact gaaatcgacc
     4021 gaaaccggcc aacaatacgg catccgcaac cggctggaag taatacgggc gcggcaggaa
     4081 gtcgcccaag cagaacagaa actggctcaa gcacggtata aattcatgct ggcttatttg
     4141 cgcttggtga aagagagcgg gttagggttg gaaacggtat ttgcggaata aagcaggctg
     4201 aaacggttat gaaattccca aagcagcctg caccccgttt cgaaagtgca ggctgctttg
     4261 ggattgatcc gatactttca cattctcatt gcctttaaat aaagcacagt taaaaacaca
     4321 tttaaattaa gtgcgaatta attcaaatgt atattcaatt aaaatcaaaa taggacagta
     4381 gtgcatcgtc aaatcgggcg taatcagaca aaacggttct cagataccgc ttaatattcg
     4441 cccacacttt ctcaatcggg ttgagctcag gtaaataagg tgcaagaggc aataccttat
     4501 gtcccaattt ttccgccatt tcccgtaaga cacccatacg gtgaaatcgc gcattatcta
     4561 aaataatcac cgatttttga gtcaatgcgg gcagtaggca ttgctgaaac cacgcttcaa
     4621 aaaagactcc gatcatcgta ttttgataaa ccatcggagc aatcagccgg ttgccgactt
     4681 gtgcggacac caaagataag cgttggtatc tttttccact tatctgcgct tttactattt
     4741 gccctttcag gctgcgggta tagggacgga acaggtagcg gtcaaatcct gtttcatcca
     4801 aataaacacg ttggtagtcg gaaaattcgg ccggctgtgt caaataatgc gttactttgg
     4861 ccgggtcttg ttctttgtaa gtggtggtct ttttttgcgc gttatcccca tctgtttgag
     4921 tgcatagcaa acggtggctg ccgtacaatc aaaatgtttg gcgatttcat gcagataggc
     4981 atccgggtgt tgcccaacat attgagccgg tttttgccta tccgatttga cggcatttag
     5041 accggtaact tgatgtttta ggctgcctgt ttgtttttta aggcgaatcc acaggtaaag
     5101 cgtgtttctt gacaagttaa acgttgctgc ggtttggctg atgtttttgc attgttc
//
LOCUS       DAXHPV010000142         5070 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.142, whole genome shotgun sequence.
ACCESSION   DAXHPV010000142 DAXHPV010000000
VERSION     DAXHPV010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5070)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5070)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5070
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.142"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(90..1445)
                     /locus_tag="ACFM6C_001713"
     CDS             complement(90..1445)
                     /locus_tag="ACFM6C_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PFL family protein"
                     /protein_id="HFC6159138.1"
                     /translation="MSIQSGEILETVKMVADQNFDVRTITIGIDLHDCISTDIDVLNQ
                     NIYNKITTVGKDLVATAKYLSAKYGVPIVNQRISVTPIAQIAAASKADSYVSVAQTLD
                     KAAKAIGVSFIGGFSALVQKGMSPSDEVLIRSIPEAMKTTDIVCSSINIGSTRAGINM
                     DAVKLAGETIKRTAEITPEGFGCAKIVVFCNAVEDNPFMAGAFHGSGEADAVINVGVS
                     GPGVVKAALENSDATTLTEVAEVVKKTAFKITRVGELIGREASKMLNIPFGILDLSLA
                     PTPAVGDSVARILEEMGLSVCGTHGTTAALALLNDAVKKGGMMASGSVGGLSGAFIPV
                     SEDEGMIAAAEAGVLTLDKLEAMTAVCSVGLDMIAVPGDTPAHTISGIIADEAAIGMI
                     NSKTTAVRIIPVTGKTVGDSVEFGGLLGYAPVMPVKEGSCEVFVNRGGRIPAPVQSMK
                     N"
     gene            complement(1460..1732)
                     /locus_tag="ACFM6C_001714"
     CDS             complement(1460..1732)
                     /locus_tag="ACFM6C_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HFC6159139.1"
                     /translation="MNNSVITVIGKDRVGIVYDVSKILAENQINILNISQQLMDDFFT
                     MIILVDTSKCSKSRQEVLDLFAEESKKLALDIRMQNEEIFQAMHRI"
     gene            complement(1857..2594)
                     /locus_tag="ACFM6C_001715"
     CDS             complement(1857..2594)
                     /locus_tag="ACFM6C_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system YwqK family antitoxin"
                     /protein_id="HFC6159140.1"
                     /translation="MKKLSRIVFSTVLLGFSAALPAQTYSVYFNQNGKLTATMSSAAY
                     IRQYSVVAGIAHAQDFYYPSMKKYSEPYIVASTQIKSFVPTLQNGMLILWHFNGQKKM
                     AGGFSKGKPDGEWVNWYPNGKKSAVMPYKNGLSEGTGYRYYRNGGKESEIQFKQNKAN
                     GVWKQWYADGSIKTEMVMVNDEPAKILTWDESGRLLSELSIRHHQRNGVVLEWYEDGS
                     KKSEAVYQDDKLVRKTQWDKDGYLIEP"
     gene            complement(2875..3774)
                     /gene="prmB"
                     /locus_tag="ACFM6C_001716"
     CDS             complement(2875..3774)
                     /gene="prmB"
                     /locus_tag="ACFM6C_001716"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008276 - protein methyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA];
                     GO_process: GO:0042273 - ribosomal large subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HFC6159141.1"
                     /translation="MFNQAAQELTTIRDVLRFAVSRFNEAGLFFGHGTDNAHDEAAYL
                     ILHTLNLPLDMLAPYLDAKLLEAEKEEVLAVIERRAVEHIPAAYLTHQAWQGEFDFYV
                     DERVIIPRSFIYELLGNGLRPWIEYDELVHNALDLCTGSGCLAIQMAHHYPDAHIDAV
                     DVSLDALEVAGINVEDYGLEERIRLIHTDLFDGLEGTYDLIVSNPPYVDAESVELLPE
                     EYLHEPKLALGSGADGLDATRQILLNAAKFLNPKGVLLVEIGHNRDVLEAAYPELPFT
                     WLETSGGDGFVFLLTREQLLGEE"
     gene            3919..4512
                     /locus_tag="ACFM6C_001717"
     CDS             3919..4512
                     /locus_tag="ACFM6C_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159142.1"
                     /translation="MADGIGNLIGWEKTGLVVGKQWITAKDDKVSDVCNANGEMGVIG
                     LYEPFSHGALTIPGHPNCRCEVVSVSGGELGEFAEKKELRKAAMQYARDNFIGKSYVN
                     ENSGHELKVTWQGVKHAASKANQAELSIITKLDDLLRYAKYEGSYSDKKGHPDIIAAH
                     KYRAVAKVGNESLNIGVIVREFPDGHKHYDHFILKDE"
     gene            4624..>5070
                     /locus_tag="ACFM6C_001718"
     CDS             4624..>5070
                     /locus_tag="ACFM6C_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0019082 - viral protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 family phage prohead protease"
                     /protein_id="HFC6159143.1"
                     /translation="MTKLYAEIAKREAQDDGTVKVLGYASIEAVDSDGEVIATAAMKA
                     AIPDYMKFDAGREMHGSNAAGTAIEINVEDDGITFFGAHIIDPVVVSKVKTGVYKGFS
                     IGGSVTARDNLNKSQITGLKLTEISLVERPANPDAVSTCFKADKSAE"
BASE COUNT         1388 a         1303 c         1127 g         1252 t
ORIGIN      
        1 attcttttct aaagacattt tacccgatgc ctataaacaa aaatgccgtc tgaagccttt
       61 cagacggcat ttccccatca aaaccgcaat cagtttttca tcgattgaac cggagccggg
      121 attctgccgc ctcggttaac aaacacttcg cacgaacctt ctttaaccgg catcacaggc
      181 gcgtagccca acaggccgcc gaactcgacg ctgtcgccga cggtttttcc ggttaccgga
      241 ataatgcgca cggcagtggt tttgctgttg atcatgccga tggcggcttc gtcggcaatg
      301 atgccggaaa tggtgtgcgc gggcgtgtcg ccgggaacgg caatcatatc caagccgacc
      361 gaacaaacgg cggtcatcgc ttcgagtttg tccagcgtca gcacaccggc ttcagcagcc
      421 gcaatcatgc cttcgtcttc agaaacgggg ataaacgcgc cgctcaaacc gccgaccgag
      481 ccggaagcca tcataccgcc ttttttcacg gcatcgttca gcaatgccaa agctgctgtt
      541 gtgccgtgcg taccgcagac gctcaagccc atttcttcaa gaatgcgtgc cactgagtcg
      601 ccgacggcgg gggtcggcgc cagcgacaag tcgagaatac caaacgggat attcagcatt
      661 tttgaggctt cgcggccgat gagttcgccc acgcgggtaa ttttgaaagc ggttttcttc
      721 actacttccg caacttcggt caatgtcgtt gcatctgaat tttccaacgc ggctttgacc
      781 acgcccggcc ccgatacgcc gacattaatc acagcatccg cttcgcctga gccgtgaaac
      841 gcgcccgcca taaacggatt gtcttccact gcattgcaaa acacgacgat tttcgcgcaa
      901 ccgaaacctt cgggcgtgat ttcagccgtg cgtttgatgg tttcgcctgc cagcttgacc
      961 gcatccatat tgataccggc acgcgtgctg ccgatattga tggagctgca cacgatatca
     1021 gtagttttca tcgcttcggg aatggaacgg attaacacct catctgaagg cgacatgcct
     1081 ttttgcacca gcgcggaaaa gccgccgata aaggacacgc cgatggcttt ggctgccttg
     1141 tccaaagtct gcgccacgct gacgtaagaa tcggctttgc tcgccgccgc gatttgggca
     1201 atcggcgtaa cggaaatgcg ctgattcaca atcggcacgc cgtatttggc agacagatat
     1261 tttgccgtcg ccaccaagtc tttgccgacc gtggtgattt tgttgtaaat gttttggttt
     1321 aacacgtcga tgtcggtgct gatgcagtcg tgcaaatcaa tgccgatggt aatggtgcgc
     1381 acgtcaaaat tctggtcggc caccattttg acggtttcta aaatctcgcc ggattggata
     1441 ctcatcacat tcctccaact caaatgcggt gcatcgcttg gaagatttct tcgttttgca
     1501 tacggatatc aagcgcgagt tttttgctct cttccgcaaa caaatccaaa acctcttgac
     1561 gcgatttgct gcattttgaa gtgtccacca agataatcat agtaaaaaaa tcgtccatca
     1621 gctgttggct gatgttgaga atattgattt ggttttccgc caaaattttg gaaacatcgt
     1681 acacgatgcc gacgcggtct ttaccgatga cggtgatgac tgaattgttc acaggcttac
     1741 tccttgcaga tatccgttaa agtccgaaat tataccaccg ttggattttg aagaaatatt
     1801 gtcaacaata tatacataca aaatgccggc tgaaactatt tcagacagca tcaaatttag
     1861 ggttcgatta aataaccatc cttatcccac tgggttttcc taaccaactt atcatcctga
     1921 taaacagcct cgctcttttt agaaccatct tcataccact ccaaaaccac cccgttgcgt
     1981 tgatggtggc ggatagacag ttccgagagt aatcggccgc tttcatccca agtcagaatt
     2041 ttggcaggct catcgttgac cataaccatt tccgtcttga tgctgccgtc ggcataccat
     2101 tgcttccata cgccgtttgc cttattttgc ttaaactgga tttcgctttc cttgccgccg
     2161 ttacggtaat agcggtaccc cgtaccttca ctcaaaccat ttttataagg cataacggca
     2221 gattttttac cgttcggata ccagttgacc cactccccgt ccggcttacc cttgctgaag
     2281 ccccccgcca tttttttctg accattaaaa tgccacaaaa tcaacatacc gttttgcagg
     2341 gtaggcacaa aagatttgat ttgcgttgaa gcaacgatat aaggttcaga atatttcttc
     2401 atcgacggat aataaaaatc ctgcgcgtgc gcaatacccg ccaccacact atattgcctg
     2461 atataagcgg cagaagacat cgtcgccgtc agctttccgt tctgattaaa ataaacagaa
     2521 taggtctgcg ccggcaaagc ggccgaaaaa cccaacagga cagttgaaaa tacaatccga
     2581 gataattttt tcattgcaat agcgatataa aaacaaggct gtgttttagt aatctgttga
     2641 tttcaattat ttgcaaggga aaagacaatt attttccggt taggaataaa cctattctat
     2701 tgaatatatt gaagccaagt acgcctatca acactatatt aaaacactgc caaaaacaat
     2761 taacttataa acaatatggt aaggatttct ctgccaagca tcaaacccga gacaacgtat
     2821 cgtaaaaatg ccgtctgaaa acaaatcgtc ttcagacggc atttcccctt caactcactc
     2881 ttcacccaat aactgctcgc gcgtcaagag gaaaacaaaa ccgtcgcccc cgctggtttc
     2941 caaccaagta aaaggcaact ccggatacgc tgcttccaat acatccctgt tatgcccgat
     3001 ttccaccagc aatacacctt tgggattcag aaactttgcc gcattcagaa gaatctgcct
     3061 ggtggcatcc aacccgtccg ccccgctgcc caatgccaat ttcggttcgt gcaaatactc
     3121 ttcaggcaat aactcaaccg attccgcatc cacataaggc ggattggaaa caatcaaatc
     3181 ataagtgcct tccaatccgt caaacaaatc cgtatgaata agccggatgc gttcttccaa
     3241 accataatct tcgacattaa tccctgccac ttccaaagca tccaagctca catcaaccgc
     3301 atcaatgtgc gcatcgggat agtgatgcgc catctgaatg gcaaggcaac cgcttccggt
     3361 gcaaagatcc aaagcattat gcaccagctc atcgtattct atccaaggac gaagtccgtt
     3421 acccaacaat tcataaataa aagaacgagg tatgattacg cgctcatcca catagaaatc
     3481 aaactctccc tgccatgcct ggtgtgtcaa ataagcggct ggaatgtgtt cgacagcacg
     3541 acgctcaata accgccagca cttcctcttt ttcagcttcc aagagttttg catcaagata
     3601 tggggcaagc atatccaaag gcaaattcaa agtatgcaga atcaaataag ccgcttcatc
     3661 atgcgcatta tctgttccat gaccaaaaaa gagccctgcc tcattaaaac ggctgactgc
     3721 aaaacgtaaa acatcgcgga tagtcgtcaa ttcttgtgct gcctgattaa acataatatg
     3781 aaccattctg cgtatagata cttttaatta taacagaaac aacaagcaaa ccttttcata
     3841 tcgccaaata accacccaat ctacccatac aactacataa atgcccgcgc gaaaaccatc
     3901 tcccgaacgg aaacggcgat ggcggacggt ataggcaatc tgattggctg ggaaaaaacg
     3961 gggcttgttg tcggtaagca gtggataacc gcaaaagacg acaaggtgtc cgatgtctgc
     4021 aatgccaacg gcgagatggg cgtaatcggg ctttacgagc ctttctcaca cggcgcattg
     4081 acgatacctg gtcatccgaa ctgccgatgc gaggttgttt ccgtatcggg tggcgaattg
     4141 ggggaatttg ccgaaaaaaa ggagcttcgt aaagcggcta tgcagtatgc gcgggataac
     4201 tttatcggca aaagctatgt caatgaaaac agcgggcatg aactgaaggt aacttggcaa
     4261 ggtgtgaaac acgctgcgtc aaaggcaaat caggcggaat tatccatcat aacaaaactt
     4321 gatgacttat tgcgctacgc aaaatatgag ggttcttatt cggataagaa aggtcatcct
     4381 gatattattg cagcacataa gtatcgtgcc gttgccaagg ttgggaatga gtctttaaat
     4441 atcggtgtga ttgtaaggga atttccagac ggccataaac attacgacca tttcatcttg
     4501 aaggatgagt aaagcccttt tgcagtgtcg ttctggagcg gatagcgtta aggcaagtac
     4561 acttccagcc ttacaaaagg gctttaaatt cagcatgcca tttatacagg caggagtaaa
     4621 cccatgacaa agttatacgc agaaatcgcc aagagggagg cgcaggacga cggcacggtc
     4681 aaggttttgg gttatgcctc aatcgaggcg gtcgattcgg acggtgaagt catcgcgacg
     4741 gcagctatga aggcggcgat tcccgattat atgaagtttg acgcggggcg cgagatgcac
     4801 ggctcaaacg ctgcgggaac ggcaattgaa atcaacgttg aagacgacgg cataaccttt
     4861 ttcggtgctc atatcatcga ccccgttgtc gtgtcgaaag tcaaaacagg cgtttacaaa
     4921 ggcttttcca tcggcggcag cgttaccgcc cgcgataatt tgaacaagtc gcaaatcacg
     4981 ggcttgaagc tgacggaaat cagccttgtc gagcgccctg ccaatcccga tgcggtgtct
     5041 acctgcttta aggcggacaa aagtgcggaa
//
LOCUS       DAXHPV010000143         5041 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.143, whole genome shotgun sequence.
ACCESSION   DAXHPV010000143 DAXHPV010000000
VERSION     DAXHPV010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5041)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5041)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5041
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.143"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            53..1456
                     /locus_tag="ACFM6C_001719"
     CDS             53..1456
                     /locus_tag="ACFM6C_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003674669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFC6159144.1"
                     /translation="MNNPDLPYRQALERLSQKQYNFTEVRRLLTEAASAGHPAAAFEL
                     AKHLMDADSPYQDREQGMEMLRIAAEQGHPYARYNLAYIQELEGAPPETLISLYRPLA
                     EEGLPEAQVRLMYLLYASRHFEEALKWAKTSAKNNNPHGQYLLAQYCRYGTPPDFETA
                     HLLYREAAAQGLAAAQWQLGLQYRFGQGTPTDTTQAINHLRAAAQQGYIPAYTPLAEL
                     ILPTAPDKAVYRFQQAAQENDPDAHAALADIYLQGKHPERNYKLALHHAEAAAAERHP
                     EGLRILGDICRYGLGIAPDTEKARHYYRQAAEAGSLTAYQKLISDSALNHPDQYGGIK
                     DSAIRRQRAEQLYQKAQALHYGLQCAPEYAAALKLYTEAAELGHSKAQTNLGSMYYFG
                     QGMTADYNEARKWFEKAAAKKDSMAFYNLACIHYSGHGVGPDKEKACRYLQEAINNGY
                     GQKSVLQELLQQWQNAV"
     gene            1578..2294
                     /gene="trmB"
                     /locus_tag="ACFM6C_001720"
     CDS             1578..2294
                     /gene="trmB"
                     /locus_tag="ACFM6C_001720"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HFC6159145.1"
                     /translation="MTDTAENQTPNDRQAGHPRSIRSFVLRQSHMTAAQQRAIDTLWD
                     SFGIDYQATPADLDANFGSNRPKILEIGFGMGTATAEIARRLPETDFLAIDVHGPGVG
                     NLLKLIEENHLENIRVMRHDAVEVVENMLQDGSLDGIHIFFPDPWHKKRHHKRRLIQA
                     PFIAKLLPKLKTGGYIHLATDWEEYAQQMLEVLSSFDSLQNTAADYAPTPDYRPETKF
                     EARGKRLGHGVWDLVFKRIR"
     gene            complement(2475..2762)
                     /locus_tag="ACFM6C_001721"
     CDS             complement(2475..2762)
                     /locus_tag="ACFM6C_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159146.1"
                     /translation="MTYSFRVENINDISDIPENHLEIVRAALPSNRSNALSREPDGAQ
                     AVFVYEIDGEFRAKLFDRIKDTDSYLQATEDNYSNDPRSIEVVYVLEQQQG"
     gene            complement(2891..4990)
                     /gene="uvrB"
                     /locus_tag="ACFM6C_001722"
     CDS             complement(2891..4990)
                     /gene="uvrB"
                     /locus_tag="ACFM6C_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HFC6159147.1"
                     /translation="MPSERRFRPIPTTRFVRKRITGKIMEVIRYPDSPFKLHQPFPPA
                     GDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQ
                     LYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNL
                     MTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDF
                     KRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVFPS
                     SHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCK
                     GIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLV
                     DYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHAGQVVEQVVRPTGLVDP
                     QIIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSD
                     IDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQ
                     TIGRAARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKD
                     IIDGVYHEEDSGKGRRQGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEASV
                     LRDRIRGIREGLLFGSE"
BASE COUNT         1239 a         1363 c         1292 g         1147 t
ORIGIN      
        1 ctaacttcat aacacaataa cgatgattcg acaaaacgga aaacgatctg atatgaacaa
       61 tcccgactta ccctatcggc aggccttaga acgcctgtct caaaaacaat ataactttac
      121 cgaagtccgc cgactgctga cagaagcggc ctcggcaggt catcccgccg ccgcattcga
      181 gttggcaaaa cacctgatgg acgcggacag cccctaccaa gaccgcgaac aaggtatgga
      241 aatgctccgc atcgccgccg aacagggaca tccctacgcg cgttacaatc tggcatatat
      301 ccaagaattg gaaggcgcac ccccggaaac cctgatatcg ctttacagac cattagcaga
      361 ggaagggctg cctgaagcac aagtccgcct gatgtacctg ctgtatgcgt cccgacattt
      421 tgaagaagcc ctgaaatggg caaaaacaag cgcaaaaaac aacaaccccc acgggcaata
      481 cctgcttgcc caatactgcc ggtacggcac gccgccggat tttgaaacgg cacaccttct
      541 ctaccgcgag gctgcagcac aaggcttggc ggcggcacaa tggcagctcg gccttcaata
      601 ccgtttcgga caaggtacac caaccgacac gacccaagct atcaatcatt tgcgcgccgc
      661 cgcacaacaa ggatacattc ccgcctacac cccgcttgcc gagctcatcc tacctacggc
      721 tcccgataaa gccgtttacc ggtttcaaca ggccgcacag gaaaatgacc ccgatgccca
      781 tgccgcactt gccgacatct acctgcaagg caagcatccg gaaagaaact acaaacttgc
      841 cctgcatcac gccgaagcag ccgccgccga acgccatccc gaaggtttgc ggatactggg
      901 cgacatctgc cgctacggtt tgggcatagc ccccgatacg gaaaaagccc ggcattatta
      961 ccggcaggca gccgaagccg gcagccttac cgcctatcag aaactcatat ccgacagcgc
     1021 gttaaaccat cctgaccaat acggcggcat taaagattcc gccattaggc ggcaaagggc
     1081 agaacagctt tatcaaaaag cccaagccct gcattacgga ttacaatgcg cgcccgaata
     1141 cgcagccgcg ctcaaactct acacagaagc cgcagaactc ggacacagca aagcccaaac
     1201 caatctgggc agcatgtatt acttcggaca gggtatgacc gccgactaca atgaagcacg
     1261 caaatggttt gaaaaagccg ccgcaaaaaa agacagtatg gcgttctaca acctcgcctg
     1321 catccattac agcggacacg gtgtcgggcc ggacaaagaa aaagcctgcc gctacctgca
     1381 agaagccata aacaacggat acgggcaaaa aagcgtcctg caagaactgc tgcaacaatg
     1441 gcaaaatgcc gtctgaacag cgttacacct accctgccga aacgaaacag gtataatcgc
     1501 ccctttccct tcccgccgtc cgaacaggcc tttcacattc agacggcatc ctgattgcac
     1561 aagcgcacgg aagcattatg acagacaccg ccgaaaacca aacaccaaac gaccgtcaag
     1621 ccggacatcc ccgcagcatc cgcagtttcg tcctccgcca aagccatatg accgccgcgc
     1681 agcaacgcgc catcgatacc ttatgggaca gcttcggcat cgattaccaa gcaacaccgg
     1741 ccgatcttga tgccaatttc ggaagcaacc gccccaaaat cctcgaaata ggcttcggta
     1801 tggggacagc aaccgcagaa atcgcccgca ggctgcccga aaccgacttt ctcgccatcg
     1861 acgtacacgg tcccggcgta ggcaacctgc tcaaactcat agaagaaaac catttggaaa
     1921 acatccgcgt gatgcggcac gacgccgtag aagttgtcga aaatatgctg caagacggct
     1981 cgctcgacgg catccacata ttcttccccg acccgtggca caaaaaacgc caccacaaac
     2041 gccgtctgat acaagccccc ttcatcgcca aactgctgcc caaactcaaa accggcggct
     2101 atatccacct ggcgacagac tgggaagaat atgcacagca gatgcttgaa gtcctcagca
     2161 gcttcgacag cctgcaaaat acggcggcag actacgcccc caccccggac taccgccccg
     2221 aaaccaaatt cgaagcgcgc ggcaaacgtc tcggacacgg cgtttgggac ttggtattca
     2281 aacggatcag ataacaaacc gctgtttgaa aaaatgccgt ctgaagcatg tttgcttaca
     2341 gacggcattt tttcaagata aagcagcgag tgatgtttcg atacaaggtt taaaacaatg
     2401 gtttgaacga aaaaacgcat gcgtgcgtat cacacatact gcacgtcagc ttgagagttt
     2461 gtgcgaccct caggctaccc ttgctgttgc tccaaaacgt atactacttc tatactgcga
     2521 gggtcattag agtaattatc ctctgttgct tgtaaataac tgtctgtatc ttttatgcgg
     2581 tcaaataact tagctctaaa ttcaccatca atttcataaa caaaaacagc ttgtgcccca
     2641 tctggctcac gagataaggc attacttcta ttactaggca gagcagctct aactatttcc
     2701 aaatgatttt caggaatatc agatatatca tttatgtttt ctacacgaaa agaatatgtc
     2761 attttcagtc ctcagaatgt aattgatcaa gttacgatgt ttctccacat cttttgtttc
     2821 tccaaatctt ttgtttctcc aaatctttta agaacattgt ggtcatcaac taaactttca
     2881 agtgctttta ttactcactc ccaaataaca acccttccct aatcccccga atcctatccc
     2941 ttaacaccga cgcctcttca aactgtaaat ccctagccgc ctgctgcatg gctttttcca
     3001 gtttggcgat ttctttaatc gcgtcttctt cgttgtgaat ttcgccgact ttaactttgt
     3061 ttttgccttg tctacggcct ttgccgctgt cttcttcgtg gtacacgccg tcaatgatgt
     3121 ctttgacctg ttttttaatc tgttgcggca cgatgccgtg ttcttcgttg aatttaattt
     3181 gtttttcacg gcggcgttcg gtttcgtcga tggcggcttt catagagtcg gtgattttgt
     3241 cggcgtacag aatcgcgacg ccgttcacgt tgcgcgcggc gcggcctatg gtttgaatca
     3301 ggctgcggtg tgagcgcagg aagccttctt tgtcggcgtc gaggatggcg acgagggaga
     3361 cttcggggat gtcgaggcct tcgcgcaaga ggttgatgcc gacgagtacg tcaaacaggc
     3421 cgagccgtaa atctctaatg atttcaacgc gctctacggt atcaatgtcg ctgtgcaggt
     3481 agcgcacttt gatgccgagt tcgctgtaat agtcggtgag ttgctccgcc atgcgtttgg
     3541 tgagggtggt aacgagaacg cgttcgcctt tttggatgcg gtcgttgatt tcgctcatta
     3601 agtcgtcgac ttgggtggcg acggggcgga tgatgatttg ggggtcgacc agccctgtgg
     3661 ggcggacgac ttgttcgacc acttgtccgg cgtgttcttc ttcgtatttg gctggagtgg
     3721 cggaaacgaa gacagtttgc ggcatgactt tttcaaattc atggaatttg agcgggcggt
     3781 tgtcgcgggc ggaaggcagg cggaagccgt agtcgacgag gttttgcttg cgcgatgcgt
     3841 cgcctttgta catgccgccg atttgggtga cggtaacgtg gctttcgtcg atgaacatga
     3901 tggcgttgtc aggcaggtag tccatcagcg tgggcggcgg ttcgccttct tttttgccgg
     3961 agaagtgccg ggagtaattt tcaatgcctt tgcagaagcc catttcgtag agcatttcga
     4021 ggtcgaaacg ggtgcgctgt tcgatgcgtt gttgctcgac ggggcgttgt tcgcgggcga
     4081 aaaattcgat gcgttcgcgc aattcttctt tgatggactc gcaggcgcgc aatacggtgt
     4141 cgcgcggggt aacgtagtgg ctggacggga agacggtgta gcggccgacg cgttgaataa
     4201 ggctgcctga aagcgggtcg aacatatcga ggcggtcgat ttcgtcgtcg aacaggctga
     4261 tacgcaaggc gttttcggag ctttcggcgg ggtacacgtc aatcacgtcg ccgcgcacgc
     4321 ggaagctgcc gcgtttgaag tccaaatcgc cgcgttcgta ctgcatggaa acgagcgtgg
     4381 cgatgatgtc gcgctgctcg atggtgtcgc cttctttgac agacaacacc atttgctgat
     4441 actcggtcgg gtcgccgata ccgtaaatgg cggacacagt ggcaacgata atcacgtcat
     4501 cgcgcgtcat caggtttttg gtggcagaaa ggcgcatttg ttcaatgtgt tcgttgatcg
     4561 cactgtcttt ttcgatgaac aaatcgcggc ttggcacata ggcttcgggt tggtaatagt
     4621 cgtagtagga gacgaaatat tccaccgcgt tttcagggaa aaactcgcgc atttcggcat
     4681 aaagctgggc ggcaagggtt ttgttgtgcg ccatgatgat ggcgggtcgg ccgctttggg
     4741 cgatgacgtt cgccatggtg taggttttgc ccgaaccggt tacgccgagc agggtttggt
     4801 aggcaaggcc gtctgaaagc ccttcgagca agtcggcaat agcggtaggc tggtcgcctg
     4861 cgggcgggaa gggttggtgg agtttgaaag gggaatcggg gtatcggatg acttccataa
     4921 tcttgcctgt gatgcgtttg cggacaaagc gtgtagtagg gatgggtcgg aaacgtcttt
     4981 cagacggcat aaggcggtga aatcctgaat gtatgccgtc tgaaacccaa tcgctaccca
     5041 a
//
LOCUS       DAXHPV010000144         4948 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.144, whole genome shotgun sequence.
ACCESSION   DAXHPV010000144 DAXHPV010000000
VERSION     DAXHPV010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4948)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4948)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4948
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.144"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            103..1008
                     /gene="glyQ"
                     /locus_tag="ACFM6C_001723"
     CDS             103..1008
                     /gene="glyQ"
                     /locus_tag="ACFM6C_001723"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HFC6159148.1"
                     /translation="MLTFQQIIFKLQTFWADKGCTVIQPFDMEVGAGTSHPATCLRAL
                     GPEPWFAAYVQPSRRPKDGRYGDNPNRLQHYYQFQVALKPAPANIQDLYLDSLRELGI
                     DPKVHDIRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGIDCTPVLGEITY
                     GIERLAMYLQGVENVYDLVWAKTLDGNTVTYGDVYHQNEVEQSTYNFEYSDADWLLRQ
                     FNDYEAQAKRLLAEENAALALPAYELVLKAGHTFNLLDARGAISVTERATYIGRIRAL
                     SRAVAQKYVESREKLGFPLMKANAA"
     gene            1085..1495
                     /locus_tag="ACFM6C_001724"
     CDS             1085..1495
                     /locus_tag="ACFM6C_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosome-binding protein YggL"
                     /protein_id="HFC6159149.1"
                     /translation="MPVYFRTPSRKRLHKMNRRQHKKLHLGEFQTLIFGVQGSLHQAE
                     DDAEAFDRFMDELIAYLAANGLEMAGGGDCGDFSCLFQKSGSRGLGETEKKAIISWLA
                     GREDVATLHATPLVDGFYGDDGWENYSETYKQAD"
     gene            1516..3579
                     /gene="glyS"
                     /locus_tag="ACFM6C_001725"
     CDS             1516..3579
                     /gene="glyS"
                     /locus_tag="ACFM6C_001725"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HFC6159150.1"
                     /translation="MMTQTLLIELLTEELPPKALNNLGNHFAAAVAEGLEKAQLVDGA
                     AEFTAYASPRRLAVQVKNVKAVQADQKIVKKGPAVANAMKDGAPTKALEGFARGAGAK
                     IEDLTIVHDGKQDVYAYEYVQTGKPLGELLEDIINQAVKKLPIPKVMRWGSSTFTFVR
                     PVHGLIVLHGGDIVNVSVLGLQSSNQTLGHRFLSNGEITIENADSYAEQMRGQGKVVA
                     SFAERKAAIQTALEGQARRLNATVAADEALLDEVTALVEYPVVLEAGFEEHFLAVPQE
                     CLILTMQQNQKYFPLLDQNGKLMNRFLLVSNLQTADPSHIIQGNERVLRARLSDAEFF
                     YKQDQKATLESRLPKLANVVYHNKIGSQAERIERLQSIAAHIAKALGADAAAAERAAR
                     LAKADLVTEMVGEFPELQGTMGKYYARLDGETEEIAEAIEQHYQPRFAGDNLPNGKVA
                     TAVALADKLETLVGIWGIGLIPTGDKDPYALRRAALGILRMLMQYGLDVNELIQTAFD
                     SFPKGLLNEKTPSETADFMQARLAVLLQNDYPQDIVAAVLAKQPRRLDDVVAKLQAVA
                     AFKQLPEAAALAAANKRVQNLLKKADAELSAVNESLLQQDEEKALFAAAQGLQPKIAA
                     AVAEGNFQTALSELASVKPQVDAFFDGVMVMAEDAAVKQNRLNLLNRLAEQMNAVADI
                     ALLGE"
     gene            3596..3997
                     /locus_tag="ACFM6C_001726"
     CDS             3596..3997
                     /locus_tag="ACFM6C_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFC6159151.1"
                     /translation="MPSEAFRRHRAYRENKLQPLVSVLICAYNAEKYFAQSLAAVVNQ
                     TWRNLEILIVDDGSTDGTLAIAKDFQKWDSRIKILAHDRLLNRKQQRRDSPANTFKHR
                     LIRALTKISREREKRRQRREQLIGKIIVPFQ"
     gene            4009..4941
                     /locus_tag="ACFM6C_001727"
                     /pseudo
     CDS             4009..4941
                     /locus_tag="ACFM6C_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712695.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
BASE COUNT         1261 a         1396 c         1288 g         1003 t
ORIGIN      
        1 catgtatgcc gtgttttcaa atcagtctgt ctttgagata aacctatcca aacagcaatg
       61 gaaacagtaa aataaaccct ttattttatc gaatcataag ccatgcttac cttccaacaa
      121 atcatcttca aactgcaaac attctgggca gacaaaggct gcaccgtcat ccaacccttc
      181 gacatggaag tcggtgccgg cacatcccat cccgccacct gcctgcgcgc actcggcccc
      241 gagccttggt ttgccgccta cgtccaaccc agccgccgcc ccaaagacgg ccgctacggc
      301 gacaacccca accgcctgca acactattac caattccaag tcgccctcaa gcccgctccc
      361 gccaatatcc aagacctcta tctcgactct ctgcgcgaat tgggcatcga tcccaaagtc
      421 cacgacatcc gctttgtcga agacgactgg gaaaacccca ccctcggcgc gtggggtttg
      481 ggctgggaag tctggctcaa cggcatggaa gtaacccagt ttacctattt ccaacaagtc
      541 ggcggcatcg actgcacccc cgtactcggc gaaatcacct acggcatcga acgcttggcg
      601 atgtacctgc aaggcgtgga aaacgtctat gacctcgttt gggcaaaaac gctggacggt
      661 aatacagtaa cttacggcga cgtgtaccac caaaacgaag tcgaacaatc cacctacaac
      721 ttcgaataca gcgatgccga ctggctgctg cgccagttca acgactacga agcgcaagcc
      781 aaacgcctgc ttgccgaaga aaacgccgcc ctcgccctgc ctgcctacga gcttgtcctc
      841 aaagcggggc atacgttcaa ccttttagac gcacgcggcg cgatttccgt aactgagcgg
      901 gcaacttata ttggacgtat tcgtgcattg agccgcgccg tggcgcaaaa atatgttgaa
      961 agccgcgaaa aactgggctt ccctttaatg aaggcaaacg ccgcctaagg gggcgacgat
     1021 tttttacgtt cgggcggcac gataaggcag ccgtccggaa gccattatat tttttaggaa
     1081 aatcatgcct gtctatttcc gcaccccaag caggaaacgc ctgcacaaaa tgaaccgccg
     1141 ccagcataaa aagctgcatt tgggcgagtt tcaaacattg attttcggcg ttcaaggcag
     1201 tttgcaccaa gctgaggacg atgccgaagc gttcgaccgc tttatggacg agctgattgc
     1261 gtatcttgcg gcaaacggct tggaaatggc gggcgggggc gattgcggcg atttttcgtg
     1321 cctgtttcaa aaatccggct cccgaggctt gggcgaaacc gagaaaaaag ccattatctc
     1381 ttggctggca ggtcgcgaag atgtcgccac tttgcacgcc accccgctgg ttgacggttt
     1441 ttacggggat gacggctggg aaaattacag cgaaacctat aaacaggcag attaaccaaa
     1501 ttcaaagaaa gccgaatgat gacccaaacc cttttaatcg aactccttac cgaagaactc
     1561 ccgcccaaag ctctgaataa tctgggcaac cattttgccg ccgccgttgc cgaaggcttg
     1621 gaaaaagcgc aactggttga cggtgcagcc gaatttacgg cttatgcctc gccgcgccgt
     1681 ttggcggttc aagtcaaaaa cgttaaagcc gttcaggccg accaaaaaat cgtgaaaaaa
     1741 ggccctgccg tggcgaatgc catgaaagac ggtgcgccga ccaaggcttt ggaaggtttc
     1801 gcacgcggtg cgggcgcgaa aatcgaagac ttgaccatcg tccacgacgg caaacaggat
     1861 gtgtacgcct acgaatacgt ccaaaccggc aaaccgctgg gcgaactttt ggaagacatt
     1921 atcaatcaag ccgttaagaa actgccgatt ccgaaagtga tgcgttgggg cagcagcacg
     1981 tttaccttcg tgcgccctgt tcacgggctg attgtgctgc acggcggcga catcgtaaac
     2041 gtcagcgttt tgggtctgca aagcagcaat caaaccttgg gacaccgctt cttgtccaac
     2101 ggcgaaatca ccattgaaaa cgccgacagc tacgccgaac aaatgcgcgg gcaaggcaaa
     2161 gtcgtcgctt cgtttgccga gcgcaaagcc gcgattcaga cggcattgga agggcaggcg
     2221 cgccgtctga acgcgaccgt tgccgccgat gaagcattgc tggacgaagt aaccgcgctg
     2281 gtcgaatacc ccgttgtttt ggaagccggt tttgaggaac acttcctcgc cgtgcctcaa
     2341 gaatgcttga ttttgacgat gcagcaaaac caaaaatact tcccgctgct cgaccaaaac
     2401 ggcaagctga tgaaccgctt cctgctggtc tccaacctgc aaaccgcaga cccgtcgcac
     2461 atcatccaag gcaacgaacg cgttttgcgc gcgcgcctgt ctgatgccga gttcttctac
     2521 aaacaagacc aaaaggcgac tttggaaagc cgcctgccca agctggcaaa cgtggtttat
     2581 cacaacaaaa tcggttcgca agccgaacgc atcgaacgcc tgcaaagcat tgccgcccac
     2641 atcgctaaag cgttgggcgc agatgccgcc gccgccgaac gcgccgcgcg tctggcaaaa
     2701 gccgacttgg taaccgaaat ggtcggcgag ttccctgaat tgcaaggcac catgggcaaa
     2761 tactatgccc gtttggacgg cgaaaccgaa gaaatcgccg aagccatcga gcaacactac
     2821 caaccgcgtt tcgccggcga caatctgccg aatggcaaag ttgccaccgc cgtggcactg
     2881 gcggacaaac tagaaacctt ggtcggcatt tggggcattg gtctgattcc gaccggcgac
     2941 aaagacccct acgccctgcg ccgcgccgcc ttgggtattt tgcggatgct gatgcagtac
     3001 ggtttggacg tgaacgaact gattcagacg gcattcgaca gcttccccaa aggtttgctc
     3061 aacgaaaaaa cgccgtctga aaccgccgac tttatgcagg cgcgccttgc cgtgttgctg
     3121 caaaacgatt atccgcaaga catcgttgcc gccgtattgg cgaaacagcc gcgccgtttg
     3181 gacgacgtag tggcgaaact gcaagccgtt gccgcgttca aacaactgcc cgaagccgcc
     3241 gcgctcgccg ccgccaacaa acgcgtgcaa aatctgctga aaaaagccga tgccgagttg
     3301 agcgcggtta acgaaagcct gctgcaacag gacgaagaaa aagccctctt tgccgccgcg
     3361 caaggcttgc agccgaaaat cgccgccgcc gtcgccgaag gcaatttcca aaccgccttg
     3421 tccgaactgg cttccgtcaa gccgcaagtc gatgccttct ttgacggcgt gatggtgatg
     3481 gcggaagatg ccgccgtaaa acaaaaccgt ttgaacctgt tgaaccgttt ggcagagcag
     3541 atgaacgcgg tagccgacat cgcgcttttg ggcgagtaac cgttgtacag tccaaatgcc
     3601 gtctgaagcc ttcagacggc atcgtgccta tcgggagaat aaattgcagc ctttagtcag
     3661 cgtattgatt tgcgcctaca acgcagaaaa atatttcgcc caatcattag ccgccgtcgt
     3721 gaatcagact tggcgcaact tggagatttt gattgtcgat gacggctcga cagacggcac
     3781 acttgccatt gccaaggatt ttcaaaagtg ggacagccgt atcaaaatcc ttgcacacga
     3841 ccgcctcctg aaccgcaaac agcaaaggcg cgattccccc gccaacacat tcaaacaccg
     3901 cctgatccgc gccttgacca aaatcagcag ggaaagggaa aaacgtcggc aaaggcgcga
     3961 acagttaatc ggcaagatca ttgtgccttt ccaataaaag gagaaaagat ggacatcgta
     4021 tttgcggcag acgacaacta tgccgcctat ctttgcgttg cggcaaaaag cgtggaagcg
     4081 gcccatcccg atacggaaat caggttccac gtcctcgatg ccggcatcag tgaggcaaac
     4141 cgggcggcgg ttgccgccaa tttgcggggg ggggtaatat ccgctttata gacgtaaacc
     4201 ccgaagattt cgccggcttc cccttaaaca tcaggcacat ttccattacg acttatgccc
     4261 gcctgaaatt gggcgaatac attgccgatt gcgataaagt cctgtatctg gatatagacg
     4321 tattggtcag ggacagcctg acgcccttat gggataccga tttgggcgat aactggcttg
     4381 gcgcgtgcat tgatttgttt gtcgaaaggc aggaaggcta caaacaaaaa atcggtatgg
     4441 cggacggcga atattatttc aatgccggcg tattgctgat caacctgaaa aagtggcggc
     4501 ggcacgatat tttcaaaatg tcctgcgaat gggtggaaca atacaaggac gtgatgcaat
     4561 atcaggatca ggacattttg aacgggctgt ttaaaggcgg gggtgtgtta tgcgaacagc
     4621 cgtttcaact ttatgccgac caattatgcc tttatggcga acaggtttgc gtcccgccat
     4681 accgacccgc tttaccgcga ccgtaccaat acggtgatgc ccgtcgccgt cagccattat
     4741 tgcggcccgg caaagccgtg gcacagggac tgcaccgcgt ggggtgcgga acgtttcaca
     4801 gagttggcgg gcagcctgac gaccgttccc gaagaatggc gcggcaaact tgccgtcccg
     4861 caccgtatgt tttcgacaaa gcgtatgctt caaagatggc gcagaaagct gtctgccaga
     4921 ttcttacgca agatttattg acggggca
//
LOCUS       DAXHPV010000145         4788 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.145, whole genome shotgun sequence.
ACCESSION   DAXHPV010000145 DAXHPV010000000
VERSION     DAXHPV010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4788)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4788)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4788
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.145"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(195..923)
                     /gene="rmpM"
                     /locus_tag="ACFM6C_001728"
     CDS             complement(195..923)
                     /gene="rmpM"
                     /locus_tag="ACFM6C_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding outer membrane protein
                     RmpM"
                     /protein_id="HFC6159152.1"
                     /translation="MTKQLKLSALFVALLASGTAVAGEASVQGYTVSGQSNEIVRNNY
                     GECWKNAYFDKASQGRVECGDAVAAPEPEPEPEPAPAPVVVVEQAPQYVDETISLSAK
                     TLFGFDKDSLRAEAQDNLKVLAQRLSRTNVQSVRVEGHTDFMGSDKYNQALSERRAYV
                     VANNLVSNGVPVSRISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPD
                     RRVDVKIRSIVTRQVVPAHNHHQH"
     gene            1287..2237
                     /locus_tag="ACFM6C_001729"
     CDS             1287..2237
                     /locus_tag="ACFM6C_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CysB family HTH-type transcriptional regulator"
                     /protein_id="HFC6159153.1"
                     /translation="MKLQQLKYALEVYRHNLNVSEAAEALFTSQPGISKQIKLLEEEI
                     GIQIFIRSGKRVVSVSQPGKVVLDIAERILRDVQNIKNIGSEFTGQDSGSLTVATTHT
                     QARYALPLIVADFVKRYPKVNLTIKQGSPAAIAQMVTSGESDLAIVTERIDDHPELGR
                     LSCYDWTHAVIVPNDHPLLECRNPLRIEDLARFPLITYEFAFNAGSSIARAFSKARLE
                     QPDVALAAADTDVLKTYVRLGLGVGLMAKMAYNPDTDGDLQLVDAAHLFEPSPTWIAL
                     RSDTYLRGYAYDFIQAFAPHLTREKVDRILYTPISEDFSI"
     gene            complement(2350..3084)
                     /gene="fnr"
                     /locus_tag="ACFM6C_001730"
     CDS             complement(2350..3084)
                     /gene="fnr"
                     /locus_tag="ACFM6C_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate/nitrate reduction transcriptional
                     regulator Fnr"
                     /protein_id="HFC6159154.1"
                     /translation="MASHNTTHQMKTLCSSCSLRELCLPVGLLPNELSQLDAVIRQSR
                     RLKKGEYLFCVGEAFTSLFAIRSGFFKTTVASQDGRDQVTGFFMSGELIGMDGICSHV
                     HSCDAVALEDSEVCELPFTHIEELGQNIPSLRTHFFRMMSREIVRDQGVMLLLGNMRA
                     EERIAAFLLNLSQRLYSRGFAANDFILRMSREEIGSYLGLKLETVSRTLSKFHQEGLI
                     SVEHKHIKILNLQVLKKMVSGCSHAI"
     gene            3289..4710
                     /gene="hemN"
                     /locus_tag="ACFM6C_001731"
     CDS             3289..4710
                     /gene="hemN"
                     /locus_tag="ACFM6C_001731"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003684340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004109 - coproporphyrinogen oxidase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HFC6159155.1"
                     /translation="MKIIQIQNNHNVNDDRPEFDRALIASLPASGPRYTSYPTADRFH
                     DGFREGEYIKALHLRGMGALNKPLSLYIHIPFCNTICYYCGCNKIITKDKSRADAYIE
                     YLEKEMELLAPHLNGRHQLAQLHFGGGTPTFLSDEQIERVFRMIRKHFELIPTGEYSI
                     EIDPRKVSRDTVLMLGRLGFNRMSIGIQDFDPKVQAAVNRIQSYEETKEVIDAAREAG
                     FKSVSVDLIYGLPHQTSESIKTTIDTVLSLDPDRLALYHYAHLPHVFKPQRRIDTVAV
                     PDSEEKLDMLQYCVQTLTERGYVFIGMDHFAKPDDELSIALKEGFLQRNFQGYSTYAD
                     CDLVAIGVSSIGKIGSTYSQNERDIDAYYAAIDEGRLPIMRGYQLNQDDILRRNIIQD
                     LMCRFALDYRIYESMFGIPFDRYFKDELADLEKLAGLGLVRLNSHGLTVTPKGRFLIR
                     NIAMVFDYHLRHKETKAKYSQTV"
BASE COUNT         1213 a         1314 c         1161 g         1100 t
ORIGIN      
        1 gaatccgaat ccgaatccga acctgcaccc cgattctgac gatagccgtt tcagaaaacc
       61 acccaaaaaa acaaaccccg caaaagcggg ggtttgtttc acatcatcga tgccgaccga
      121 cgtttcacga atattgcaac agtacccggt acaaaatccg ctaacctcat gcatcggcaa
      181 gatattgcct agccttagtg ttggtgatga ttgtgtgccg gcacaacctg acgggttacg
      241 atgctgcgga ttttcacatc cacacggcgg tcaggttcga tacatgcaat cagagcctca
      301 cgttttttgg ctttagagac tttcgcaccc agtttggcaa cttcggcttc acaaacttga
      361 gtcatttgcg cttgagattc gcccaagccg acagcagaaa ttctagaaac aggtacgccg
      421 ttgctgacca ggttgtttgc cactacgtat gcgcggcgtt cggacagggc ctgattgtat
      481 ttgtcagaac ccataaagtc ggtatggcct tcgacgcgga cagattggac attggttcga
      541 ctcaggcgtt gcgccaatac tttcaggttg tcttgagctt cggcgcgcaa tgaatcctta
      601 tcgaaaccga acagggtttt ggcagacagg gaaatggttt catcaacata ttgcggagcc
      661 tgctccacaa cgacgacagg cgcgggtgcg ggttcgggtt ctggctcggg ttcgggggca
      721 gcaaccgcat cgccgcattc tacgcgacct tggcttgctt tatcaaagta ggcgtttttc
      781 cagcattcgc catagttgtt gcgtacgatt tcgttcgact ggccgcttac ggtgtaaccc
      841 tgaacggacg cctcgcccgc aacagcagtg ccggaagcga gcaatgcaac gaataatgcg
      901 cttaatttca gctgtttggt cattttattc cctcattaaa tttgtacagc agatacagaa
      961 gcaactgctg aattgccaac atacaggccg ctgtagaaac atggcggcaa atcggatatt
     1021 tcagtctcca ctataaagaa gcagggggag gactgtcaat actcaacgcc tgaaaacaac
     1081 cgtaaaacag cctgtttcct gatagtctat catgccgaaa aatcaattcc gtgtcattac
     1141 tttaggggga ttttttccat atcgcacgat tgccgttgca caaaaacaac aaacacaaca
     1201 gcaaagcccc ataccgtacc ggcaagaaaa tatgataaat tataaacaat gttcagccac
     1261 ccgacacaga cccacaccga cccgccatga aattacaaca attgaaatac gccttagaag
     1321 tttaccggca caacctgaac gtttccgaag cggccgaagc cttgtttact tcgcaacccg
     1381 gcatctccaa acaaatcaaa ttgctggaag aagaaatcgg cattcagatt tttatccgca
     1441 gcggcaagcg cgtggtttcg gtctcgcagc cgggcaaggt ggttttggat attgcagaac
     1501 gtattttgcg cgatgttcag aacattaaaa atatcggcag cgagtttacc ggacaggaca
     1561 gcggttcgct gacggttgcc acgacgcata ctcaggcacg ctatgcccta cccttgattg
     1621 ttgccgattt tgtgaaacgc tatccgaaag tcaacctgac catcaaacag gggagccctg
     1681 ccgccatcgc ccaaatggtt acttcgggag agtctgattt ggcaattgtt acggaacgta
     1741 tagacgacca ccccgaactg ggaagacttt cctgctacga ctggacacac gcggttatcg
     1801 taccgaacga ccaccccttg ctcgaatgca gaaaccccct ccgtattgaa gatttggcga
     1861 ggtttccgct gattacttat gaatttgcat tcaatgcggg cagcagcatc gcgcgggcat
     1921 tttccaaagc ccgtttggaa cagccggatg tcgcattggc ggcggcggat acggacgtat
     1981 tgaagactta tgtgcgcttg ggtttgggcg tgggactgat ggcgaaaatg gcgtacaacc
     2041 cggatacgga cggcgatttg cagcttgtgg atgcggcaca cctgttcgag ccgtcgccga
     2101 cgtggattgc tttgcgcagc gatacttatt tgcgcggata tgcctacgac tttatccaag
     2161 cgtttgcgcc gcacctgaca cgcgagaagg tggataggat tctgtacacg cccatcagcg
     2221 aggatttttc gatttaggcg gctgccggtt ttcagacggc actttgcggc agatacaaca
     2281 aacaggacag atgttttcgt ctgccctgtg tttattgaga atgccgtctg aaatgttcgt
     2341 acgggttaat caaatggcgt gcgagcagcc ggacaccatt tttttcaaca cctgcagatt
     2401 gaggattttg atgtgcttat gctcgacgga aatcaatcct tcctgatgaa atttagataa
     2461 tgtgcggctg acggtttcaa gtttcagccc gagataactg ccgatttctt cgcgggacat
     2521 tcttaagatg aagtcgttgg cagcaaaacc tcgggaataa aggcgttggg aaaggttcag
     2581 caggaaggcg gcaatccgct cttcggcgcg catattgccc aacagcagca taacaccttg
     2641 gtcgcgcacg atttcacggc tcatcatgcg gaagaagtgc gtacgcaggc tggggatgtt
     2701 ttgccccagt tcttcgatgt gggtaaacgg cagttcgcac acttcgctgt cttccaaggc
     2761 gaccgcgtcg caactgtgca catgggaaca gatgccgtcc atgccgatga gttcgcccga
     2821 cataaagaaa cccgttacct gatcgcggcc gtcctgactg gcgacggttg ttttgaagaa
     2881 gcccgaacgg atggcaaaga gcgaggtaaa ggcttcgccg acacagaaca ggtattcgcc
     2941 ctttttcagg cggcggcttt gacggatgac ggcatcgagt tggctgagct cgttgggcag
     3001 cagcccgaca ggcaggcaga gttcccgcaa agaacaggaa gaacacagcg ttttcatctg
     3061 atgtgtagta ttatgcgaag ccataccgta cctttttgtg cgctttgccc catcatgatt
     3121 atagtggatt aaatttaaac cagtacggcg ttgcctcgcc ttgtccttat ttaaatttaa
     3181 tccactatat gtgcttattg acacatatca agacaggttt atcatactgt ggcattctac
     3241 caaactatcc aaaatttgac taacatcata aaaccgcaca cacacaccat gaaaatcatt
     3301 cagatacaga acaatcacaa tgtaaacgat gaccgccccg agtttgaccg cgcgctgatt
     3361 gccagcctgc ccgccagcgg cccgcgctac acttcctacc ctaccgccga ccgtttccat
     3421 gacggtttcc gcgaaggcga atatatcaaa gctttacatt tgcgcggtat gggcgcgtta
     3481 aacaaaccgc tttcccttta cattcacatt ccgttctgca acaccatctg ctactactgc
     3541 ggctgcaaca aaatcatcac caaagacaaa agccgcgccg atgcctacat cgaatatctt
     3601 gaaaaagaaa tggaactgct cgctccacat ctgaacggac ggcaccagct tgcccaactg
     3661 cacttcggcg gcggcacgcc gacctttttg agcgacgaac agatcgaacg tgtcttccgc
     3721 atgatacgca aacatttcga gttaatcccc accggcgaat actccatcga aatcgacccg
     3781 cgcaaagtca gccgcgacac cgtcctcatg ctcggcaggc tcggcttcaa ccgcatgagc
     3841 atcggcattc aggatttcga ccccaaagtg caggcggcgg tcaaccgcat ccaaagttac
     3901 gaagaaacca aagaagtcat cgatgcggcg cgcgaagcgg ggttcaaatc cgtcagcgtc
     3961 gatttgattt acggcctgcc gcaccagact tcggaaagca tcaaaaccac catcgatacc
     4021 gttttgtcgc tcgatcccga ccgcctcgcc ctttatcact acgcccacct gccgcacgtg
     4081 ttcaaaccgc aacgccgcat cgataccgtc gccgttcccg acagcgaaga gaagctcgat
     4141 atgctgcaat actgcgtcca aaccctgaca gagcgcggct acgtcttcat cggcatggat
     4201 catttcgcca aacctgacga cgaactctcc atcgccctca aagaaggctt cctccagcgc
     4261 aacttccaag gctattcgac ctacgcggat tgcgatttgg tcgccatcgg cgtgtcgtcc
     4321 atcggcaaaa tcggcagcac ctattcccaa aacgaacgcg acatcgatgc ctactatgcc
     4381 gccatcgacg aaggcagact gcccatcatg cgcggttatc agctcaatca ggacgacatc
     4441 ctgcgccgca acatcattca ggatttgatg tgccgtttcg cgctcgacta tcggatttac
     4501 gaaagtatgt tcggcatccc gttcgaccgc tacttcaaag acgaactggc ggatttggaa
     4561 aaactcgccg gcttgggatt ggtgcgcctg aacagccacg ggctgaccgt taccccaaaa
     4621 ggacgcttcc tcatccgcaa catcgccatg gtcttcgatt accacctgcg ccataaagaa
     4681 accaaggcga aatattcgca aacggtgtga ttgcgtctaa cgtacaaatg ccgtcggcag
     4741 gatatcataa cgttccgcac ctttgtgtcc gaccgttccg aaaccaag
//
LOCUS       DAXHPV010000146         4781 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.146, whole genome shotgun sequence.
ACCESSION   DAXHPV010000146 DAXHPV010000000
VERSION     DAXHPV010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4781)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4781)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4781
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.146"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            207..1049
                     /locus_tag="ACFM6C_001732"
     CDS             207..1049
                     /locus_tag="ACFM6C_001732"
                     /EC_number="2.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006541 - glutamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HFC6159156.1"
                     /translation="MCQLLGMNCNTPTDIMFSFEGFRRRGGITDHHADGFGIGFFEGK
                     GVRLFHDDKPSANSPVADLVRAYQIKSENVVAHIRKASQGQTSLANTHPFMREMWGGY
                     WLFAHNGHLVDFFPEQGEFFQPVGTTDSERAFCHILNRLRTRFVARPDDDTLFGAIAG
                     LTHEIRKFGLFNFMLSDGIALFAHASTLLHYIVRQAPFGKARLLDDDVMVDFAEVTTP
                     SDRVAVIATLPLTRDETWAQLAVDELVMFREGKIILNDRPRHPVYMSVEEGLETARAA
                     GVAV"
     gene            1079..1543
                     /locus_tag="ACFM6C_001733"
     CDS             1079..1543
                     /locus_tag="ACFM6C_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HFC6159157.1"
                     /translation="MKCPFCAHPDTRVADSRLMDERNAVRRRRYCPNCGKRFGTLETA
                     ELKMPAVIGTDKKRSPFNAQRLRNDLTAAARKSALTPEQIDETARLTELRLYASGLRD
                     ISAAELVEIVLEELFGQSTEAAVRFAALHKRFDNPADFASWLAQAVKTGGKA"
     gene            1575..2684
                     /gene="ribD"
                     /locus_tag="ACFM6C_001734"
     CDS             1575..2684
                     /gene="ribD"
                     /locus_tag="ACFM6C_001734"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA];
                     GO_function: GO:0008835 -
                     diaminohydroxyphosphoribosylaminopyrimidine deaminase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HFC6159158.1"
                     /translation="MFSDTDISMMENALRLAALGRFSTSPNPRVGCVIAQDSQIVGQG
                     FHVKAGEPHAEVHALHQAGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAA
                     MRDPNPLVAGKGLALLESAGIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSL
                     DGKTALSDGSSFWITGEDARANVQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQP
                     ARIVLDSRLRLPLDSHLLTDGQSPTYIATLERDEDKLHPYRKHAHVRILMPSETAGGK
                     IDLNSLMRLLADEGIGELIVEAGSELTSAFLAEDLADEIVLYRSPKILGSGKDLLSLP
                     ENRAALSAPPLWTPVSTEILGHDIKTVFRKNDNAF"
     gene            2879..4300
                     /locus_tag="ACFM6C_001735"
     CDS             2879..4300
                     /locus_tag="ACFM6C_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HFC6159159.1"
                     /translation="MDTKEILGYAAGSIGSAVLAVIILPLLSWYFPADDIGRIVLMQT
                     AAGLTVSVLCLGLDQAYVREYYAAADKDTLFKTLFLPPLLSAAAIAALLLSRPSLPSE
                     ILFSLDDAAAGIGLVLFELSFLPIRFLLLVLRMEGRALAFSSAQLVPKLAILLLLPLT
                     VGLLHFPANTAVLTAVYALANLAAAAFLLFQNRCRLKAVRRAPFSSAVLHRGLRYGIP
                     IALSSIAYWGLASADRLFLKKYAGLEQLGVYSMGISFGGAALLFQSIFSTVWTPYIFR
                     AIEENAPPARLSATAESASALLAAAVCLTGIFSPLASLLLPENYTAVRFIVVSCMLPP
                     LFCTLAEISGIGLNVVRKTRPIALATLGALAANLLLLGLSVPSGGARGAAVACAASFW
                     LFFAFKTESSCRLWQPLKRLPLYLHTLFCLASSAAYTCFGTPANYPLFAGVWAAYLAG
                     CILRHRKDLHKLFHYLKKQGFPL"
     gene            4297..>4781
                     /locus_tag="ACFM6C_001736"
     CDS             4297..>4781
                     /locus_tag="ACFM6C_001736"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6159160.1"
                     /translation="MKIILTTSMAGLGGTETATVRLGRLLKRRGHDVILASSDGPFVG
                     EAQASGIRWQPVDFYRGGLAGYLKSTFTYARMLRREQPDIIDCQMARVVPACALAAKI
                     VSPKTKIIYHSHGLDAATYPKIAKLFDKLGVYIIGNCKHEREKLIRHGFPAGRIAYAY
                     NA"
BASE COUNT          977 a         1609 c         1221 g          974 t
ORIGIN      
        1 ctcaaaagtt acggaacgaa aaacaaccaa aaccggacaa gtcggattcc cgcctgcgcg
       61 ggaatgacgg aatcttaagt ttccgtcttt gttttctgtt ttctgttttc gagggaataa
      121 tggggaacaa gccgtatttc agacggcatt ttcagttcgg ggtataatcc gaatacttgc
      181 gaccatctga atcatttgga caaactatgt gtcaactgct gggcatgaac tgcaatacgc
      241 cgaccgatat tatgttttcc tttgaaggct tccgccggcg cggcggcatt accgaccatc
      301 atgccgacgg tttcggcatc ggctttttcg aaggcaaagg cgtgcgcctg ttccatgacg
      361 acaaacccag tgccaattcg cccgtcgccg acctcgtgcg cgcctaccag attaaatcgg
      421 aaaacgtcgt cgcccatatc cgcaaagcat cgcaaggaca aacctcgctg gcaaacaccc
      481 atccctttat gcgcgaaatg tggggcggct actggctgtt tgcccacaac gggcatttgg
      541 tcgacttctt tcccgaacag ggcgaatttt tccaacccgt cggcacaacc gattccgaac
      601 gcgcgttctg ccacatcctc aaccgcctgc gcacacgctt tgtcgcccgt cccgacgacg
      661 acacgctgtt tggcgcgatt gcggggctga cgcacgaaat ccgcaaattc gggctgttta
      721 actttatgct ttcagacggc attgccctgt ttgcccacgc cagcacactg ctgcactaca
      781 tcgtccgcca agccccgttc ggcaaggcgc gcctgctcga cgacgacgta atggtcgatt
      841 ttgccgaagt aaccacgccc tccgaccgcg tcgccgttat cgccaccctg ccactgacgc
      901 gcgatgaaac gtgggcgcaa cttgccgttg acgaactggt gatgttccgc gaaggcaaaa
      961 ttattttgaa cgaccgaccc cggcaccccg tttatatgag tgtcgaagaa ggtttggaaa
     1021 ccgcgcgcgc cgccggcgtc gccgtctgaa cttcagacga cataggagga cgaacccgat
     1081 gaaatgcccg ttttgcgccc accccgacac ccgcgttgcc gattcgcgcc tgatggacga
     1141 acgcaacgcc gtccgccgcc gccgatactg ccccaactgc ggcaaacgct tcggcacact
     1201 cgaaaccgcc gaactcaaaa tgcccgccgt catcggcacg gacaaaaaac gttcgccctt
     1261 caatgcacaa cgcctccgca acgacctgac cgccgccgcc cgaaaatccg ccctgacacc
     1321 cgaacagatc gacgaaaccg cccgcctcac ggaactcagg ctgtatgctt cgggtttgcg
     1381 cgacatatcc gctgccgaac ttgtcgaaat cgtactggaa gagctgttcg ggcaaagcac
     1441 ggaagccgcc gtccgtttcg ccgccctgca caaacgcttc gacaatccgg cagactttgc
     1501 ctcgtggctg gcgcaagccg tcaaaacagg cggcaaagcc tgattccccc aacccatact
     1561 gatacggtat ccccatgttt tcggacacag atatatccat gatggaaaac gccctccgac
     1621 ttgccgcttt ggggcgtttt tccacttcgc ccaatccgcg cgtcggctgc gttatcgcac
     1681 aagacagcca aattgtcggg cagggcttcc acgtcaaagc gggcgaaccg cacgccgaag
     1741 tccacgccct gcatcaggcg ggggaaatgg caaaaggcgc gaccgccttt gttaccctcg
     1801 aaccgtgcag ccattacggg cgcacaccgc cctgcgccga agctctgctc cgttccggcg
     1861 taacacgcgt cgttgccgcc atgcgcgacc ccaacccgct ggttgccggc aaagggcttg
     1921 ccctgctcga atcggcaggc atcaaaacag aatgcggact gcttgaaaac aaagcacgcg
     1981 aactcaaccg gggattttta tcgcgcatcg aacgccgccg tcccttcgtc cgcctcaaat
     2041 gcgccgtttc gctggacggc aaaaccgccc tttcagacgg cagcagcttt tggattaccg
     2101 gcgaagacgc gcgtgccaac gtacaggttt tgcgtgccga aagctgcgcg gtgctgaccg
     2161 gcatcggcac ggtgttggcg gacaatcccc ggctcaacgt ccgcgctttt ccaactttgc
     2221 gccaacccgc acgcatcgtt ttagacagcc gcctgcgcct gcccttggac agccaccttc
     2281 tgaccgacgg acaatctcca acctacatcg ccaccttgga acgcgatgaa gacaaactcc
     2341 acccctatcg caaacacgcc cacgtccgca tcctgatgcc gtctgaaacg gcaggcggca
     2401 aaatcgattt gaacagcctg atgcgcctgc ttgccgacga aggcataggg gaactcatag
     2461 tcgaagcagg ctccgaactc acatctgcat ttttggcaga agatttggca gacgaaatcg
     2521 tgctgtaccg ttcgcccaaa atcctcggca gcggcaaaga cctgctttcc ctgcccgaaa
     2581 accgcgccgc cctttccgca ccgcccttgt ggacacccgt ttccaccgaa atcctcggac
     2641 acgacatcaa aaccgtgttt cggaaaaacg ataacgcctt ttaaagggtt tgcgccgttt
     2701 cactatataa taacgccgat aaaaaacggc accattcaga ccgccgccca cccgaaaaag
     2761 cgcaacccgg actgccgcac cccgccggca gccgcgacgg tctgaaagcc gtcaaattcc
     2821 gatcaagaaa ggcttcagac ggcataggca gcatcccgcc tccgtccgga catcaaaaat
     2881 ggacacaaaa gaaatcctcg gctacgcggc aggctcgatc ggcagcgcgg ttttagccgt
     2941 catcatcctg ccgctgctgt cgtggtattt ccccgccgac gacatcggac gcatcgtgct
     3001 gatgcagacg gcggcggggc tgacggtgtc ggtgttgtgc ctcgggctgg atcaggcata
     3061 cgtccgcgaa tactatgccg ccgccgacaa agacaccttg ttcaaaaccc tgttcctgcc
     3121 gccgctgctg tctgccgccg cgatagccgc cctgctgctt tcccgcccgt ccctgccgtc
     3181 tgaaatcctg ttttcgctcg acgatgccgc cgccggcatc gggctggtgc tgtttgaact
     3241 gagcttcctg cccatccgct ttctcttact ggttttgcgt atggaagggc gcgcccttgc
     3301 cttttcgtcc gcgcaactcg tgcccaagct cgccatcctg ctgctgctgc cgctgacggt
     3361 cgggctgctg cactttccgg cgaacaccgc cgtcctgacc gccgtttacg cgctggcaaa
     3421 ccttgccgcc gccgcctttt tgctgtttca aaaccgatgc cgtctgaagg ccgtccggcg
     3481 cgcaccgttt tcatccgccg tcctgcatcg cggcctgcgc tacggcatac cgatcgcact
     3541 aagcagcatc gcctattggg ggctggcatc cgccgaccgt ttgttcctga aaaaatatgc
     3601 cggcctagaa cagctcggcg tttattcgat gggtatttcg ttcggcgggg cggcattatt
     3661 gttccaaagc atcttttcaa cggtctggac accgtatatt ttccgcgcaa tcgaagaaaa
     3721 cgccccgccc gcccgcctct cggcaacggc agaatccgcc tccgccctgc ttgccgccgc
     3781 cgtctgcctg accggcattt tctcgcccct cgcctccctc ctgctgccgg aaaactacac
     3841 cgccgtcagg tttatcgtcg tatcgtgtat gctgccgccg ctgttttgca cgctggcaga
     3901 aatcagcggc atcggtttga acgtcgtccg caaaacacgc ccgatcgcgc tcgccacctt
     3961 gggcgcgctg gcggcaaacc tgctgctgct ggggctttcc gtaccatccg gcggcgcgcg
     4021 cggcgcggcg gttgcctgtg ccgcctcatt ctggctgttt tttgccttca agaccgaaag
     4081 ctcctgccgc ctgtggcagc cgctcaaacg cctgccgctt tatctgcaca cattgttctg
     4141 cctggcctcc tcggcggcct acacctgctt cggcacgccg gcaaactacc ccctgtttgc
     4201 cggcgtatgg gcggcatatc tggcaggctg catcctgcgc caccggaaag atttgcacaa
     4261 actgtttcat tatttgaaaa aacaagggtt tccattatga aaatcatcct gaccacttct
     4321 atggcaggct tgggcggcac ggaaaccgcc accgtccgcc tcgggcggct actcaaacgg
     4381 cgcgggcacg acgtcatcct tgcttcttcg gacgggcctt ttgtcggaga agcgcaagca
     4441 tcgggcatcc gttggcagcc ggttgatttt taccggggcg ggcttgccgg ctacctcaaa
     4501 agcaccttta cctacgcccg gatgctgcgc cgcgaacaac ccgacatcat cgactgtcaa
     4561 atggcgcgcg tcgttcccgc ctgcgccctt gccgccaaaa tcgtttcgcc gaaaaccaaa
     4621 atcatctacc actcgcacgg tttggacgcg gcaacctacc ccaaaatcgc caaactcttc
     4681 gacaagttgg gcgtgtacat catcggcaac tgcaaacacg agcgcgaaaa actcatccgc
     4741 cacggcttcc ccgccggccg gattgcctac gcctacaacg c
//
LOCUS       DAXHPV010000147         4727 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.147, whole genome shotgun sequence.
ACCESSION   DAXHPV010000147 DAXHPV010000000
VERSION     DAXHPV010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4727)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4727)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4727
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.147"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            586..1068
                     /locus_tag="ACFM6C_001737"
     CDS             586..1068
                     /locus_tag="ACFM6C_001737"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFC6159161.1"
                     /translation="MAIVKNSVVSLHYEMYDANNQLLDKTEEPIAYLHGGYDGIFPLV
                     EEALHGKDAGDTVDVALSPDDAFGEQDPELVRIEDAGVFPVEVEVGMMFEADDPETGD
                     VVVYRVTDVADGKAVVDGNHPLAGMKIRFKATVESVRDASDEEIAHGHVHGPHGHHHH
                     "
     gene            1155..1967
                     /gene="hpnC"
                     /locus_tag="ACFM6C_001738"
     CDS             1155..1967
                     /gene="hpnC"
                     /locus_tag="ACFM6C_001738"
                     /EC_number="2.5.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004311 - farnesyltranstransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="squalene synthase HpnC"
                     /protein_id="HFC6159162.1"
                     /translation="MSVGHYENFPVGSLILPRRLRKPVHAVYAFARTADDMADEGSMP
                     SEARLAGLEGLQRELDVLASGGRSAHPLIARLDAEAVVPFGLDLQPFYDLLSAFSQDV
                     VKTRYGNFGELADYCRRSANPVGRIMLALYGKTDAVCVAQSDGICTALQLVNFWQDVA
                     VDWQKGRVYIPQDDLLKFGVSEEQIAAGRADAAFQRLMAYECRRAFRMLKAGSPLARE
                     LKGRIGLELRMIVLGAQLILQKLDACRYDVFAQRPVLDKKDWLIMLKKALWK"
     gene            complement(2039..2509)
                     /locus_tag="ACFM6C_001739"
     CDS             complement(2039..2509)
                     /locus_tag="ACFM6C_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1841 family protein"
                     /protein_id="HFC6159163.1"
                     /translation="MYDVNTHDVRRFFAHVWQQRLNPLQLSALEQKALRIVEAHPEYH
                     RYLERIEDHLDTDWLPENGESNPFLHMSLHLSVQEQAGIDQPHGIRAIHDTLCAKRGW
                     LEAEHEMMEALAETLWTAQRYGTGLDVNFYMTRLRKLIGLGAENQARLNPHEIA"
     gene            2600..4441
                     /locus_tag="ACFM6C_001740"
     CDS             2600..4441
                     /locus_tag="ACFM6C_001740"
                     /EC_number="1.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0030554 - adenyl nucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0047134 - protein-disulfide reductase
                     (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HFC6159164.1"
                     /translation="MQTNYLSETDSIMKKLICLFAVFLMLCGRAFALDANDLLPPEKA
                     FVPELAVADDGVNVRFRIADGYYMYQAKIVGKTDPADLLGQPSFSKGEEKEDEFFGRQ
                     TVYHHEAQVAFPYAKAVGEPYKLVLTYQGCAEAGVCYPPVDTEFDISGNGTYHPQTDE
                     PASAKDRFLQPSSQNGSGALPPPKGDEGGDSRFKLSWDTLNANLLAFFLAGLGLSFTA
                     CMYPLLPIVSSIVVGDKKAGKARAFVLSVVYVQGLALTYTLVGIVAGLTGALLTVWLQ
                     QAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRLSGGKIVSVFIMGILSA
                     LIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPLIAIGTFGGHILPKAGD
                     WMNAVKYAFGFILLAVAVYLATPHLPYYLVVALYTLLMLVPACMLLVNGRRQKRRPKA
                     VAFALGGILLIGGAWFGWQGANGKTTALHHFLTLNPPAEAGKSSEHGKMFADTAALKA
                     AMDTALKEHPDKPVVLDFYADWCISCKEMAAYTLNQPEVHQAVDMERFFQIDVTANTP
                     EHQALLKEYGLFGPPGVFVVRSDGSRSEPLLGFVKADKFIEWYEQNR"
BASE COUNT         1046 a         1047 c         1401 g         1233 t
ORIGIN      
        1 gcgggagctt cggcggcagg tgcttcggta gcgggagctt cagcggcttt ttcaccgccg
       61 caggctgcca ggaccaaaga caacaaagca gcggcaaaca gggatttttt cattttagta
      121 acctttagaa ccaatttaaa ttattgaaac aaataggtct ttatcgacca tactacaaac
      181 caggttggaa attcatcgct gaatttgcgt aattatgcac tatggaataa gggattgcaa
      241 tgtcgtacag atgggaaaaa ggtttgaatg aaaagttttc tggcgggcgg attgataaat
      301 cctgtaaaac ggttttgctg ttaaaaattc gatagggata aatattatag agattaatat
      361 aatttcagta tcttgtatga tttattaagg cggattggga aagtcggcag acaggtcgga
      421 atggttttaa gaatgttgta aaaaagttac accgcaataa aataacaaaa atttacattg
      481 aaatatgtgc tgtacagttt atgaacaggt taacggtaat cggccgacgc ggcggttgtg
      541 ttagaatgcg cctgtaatca atctgctgtt cctgaaagga caaatatggc tatcgtgaaa
      601 aattccgtgg tttcgctgca ttatgagatg tatgatgcca acaatcagct tttggacaaa
      661 accgaagaac cgattgcgta tctgcacggc ggttacgacg gcattttccc tttggtggaa
      721 gaggcgttgc acggtaagga tgccggcgat acggtcgatg tggcgctgtc gcccgacgat
      781 gcgttcggcg agcaggatcc ggagttggtc cgtattgaag atgcgggcgt gttccctgtt
      841 gaagtcgaag tcggcatgat gtttgaagcc gacgatcctg aaaccggcga tgttgtcgtc
      901 tatcgtgtaa ccgatgttgc cgacggcaag gcggtggtgg acggcaacca tcctttggca
      961 ggcatgaaaa tccgctttaa ggctacggtt gaaagtgtgc gcgatgcatc cgatgaggaa
     1021 atcgcacacg gtcatgtcca cggtccgcac ggtcatcacc accactgatt gccggcagct
     1081 tggaggtatc tgatgccgtc tgaaaagggt ttgttccatt tcagacggca ttttgtttga
     1141 tggatggaga aggtatgtcg gttgggcatt atgaaaattt tcccgtcggt tcgctgattt
     1201 tgccgcgcag gttgaggaag ccggttcacg cggtgtacgc gtttgcacgg acggcggacg
     1261 atatggcgga cgagggcagt atgccgtctg aagccaggtt ggcggggttg gagggtttgc
     1321 agcgcgagtt ggacgtgttg gcatcgggcg gccggtcggc gcatcctttg attgcacgat
     1381 tggatgccga ggcggttgtg ccgttcggtt tggatttgca gccgttttat gatttgcttt
     1441 ctgcattttc tcaggatgtg gttaaaacaa ggtatggaaa tttcggcgag ctggccgatt
     1501 attgtcggcg ttccgccaac cctgtcggac gcattatgct ggctttgtac gggaaaacgg
     1561 atgcggtgtg cgtggcgcaa agcgacggca tttgtacggc tttgcaactg gtcaatttct
     1621 ggcaggatgt ggctgtggat tggcaaaagg gcagggttta tatcccgcag gacgatttgt
     1681 tgaaattcgg tgtttctgag gaacagatcg cggcaggacg ggcggatgcg gcgtttcagc
     1741 ggctgatggc gtatgagtgc cgacgcgcat tccgtatgct gaaggcgggt tcgcctttgg
     1801 caagggaact gaaggggcgt atcggtttgg aactccgtat gattgtgttg ggggcgcagt
     1861 tgattttgca gaaactggac gcgtgccgat acgatgtgtt tgcacaacgc cccgttttgg
     1921 ataagaagga ttggttgatt atgctgaaaa aggcgttgtg gaaatgattg ggggaaatgc
     1981 atgccgtctg aaaggggttg ttccgcttca gatggcattt tgcaggcggt tggtatggtc
     2041 aggcgatttc atgcgggttc aacctggctt gattttctgc acccaagccg atgagtttgc
     2101 gcagtcgggt catgtagaaa ttgacatcca aaccggtgcc gtagcgttgc gccgtccaca
     2161 gtgtttccgc cagtgcctcc atcatttcgt gttcggcttc cagccagccg cgtttggcgc
     2221 acagggtgtc gtggatggcg cgtatgccgt gcggctggtc tatgcccgcc tgttcttgga
     2281 cggacagatg cagcgacata tgcaggaagg ggttgctttc gccgttttcg ggcagccagt
     2341 cggtgtccag atggtcttcg atgcgttcga gatagcggtg gtattcggga tgggcttcga
     2401 caatgcggag ggctttctgt tccagtgcgc tcagttgcag cggattgagc cgctgctgcc
     2461 acacgtgggc gaaaaagcgg cggacatcgt gggtattgac atcgtacatg gcgggttcga
     2521 taagatgttt atggaaatag gttcggataa tggcgggttt tacataaatt aaatcccacc
     2581 gtcaacctta ccatttataa tgcagacaaa ttatttgtct gaaacggatt cgattatgaa
     2641 aaaactgatt tgcctgttcg ccgtattttt gatgttgtgc ggacgagctt tcgcgctgga
     2701 tgcgaacgat ctgctgccgc cggaaaaggc attcgtgccg gagcttgccg ttgccgacga
     2761 cggtgtgaac gtccgtttca ggattgccga cggatactat atgtatcagg cgaaaatcgt
     2821 cggcaagacc gatccggcgg atttgttggg acagccttct ttcagcaagg gcgaagagaa
     2881 ggaagacgag tttttcggca ggcagacggt ttaccatcac gaagcgcagg ttgcctttcc
     2941 ttatgcaaag gctgtcggcg aaccgtataa attggttttg acctatcagg gctgtgccga
     3001 agccggcgtg tgctatccgc ccgtggatac cgagtttgat atttccggca acggcactta
     3061 ccatccgcaa accgacgaac cggcatccgc caaagatcgc tttttgcagc cttcctctca
     3121 aaacggcagc ggggcgctgc cgcccccgaa gggggatgag ggcggcgaca gccgtttcaa
     3181 gctgtcttgg gatacgctca acgccaatct tttggcgttt tttctcgccg gtttgggtct
     3241 gagttttacc gcctgtatgt atcccctgtt gccgattgtt tccagtattg tggtcggcga
     3301 caaaaaggcg ggcaaggcgc gggcgtttgt gctgtccgtc gtttatgttc agggtttggc
     3361 tctgacttat acgctggtcg gcattgttgc cggactgacg ggcgcgctgc tgaccgtatg
     3421 gttgcagcag gcttgggtcg tgttggcggc atcggctttg atggtcgtct tggcactgtc
     3481 tatgttcggg ctgttcaaca tccagcttcc caacgccgtg cagtcgtatt ttcagaatca
     3541 aagcagcagg ctttcaggcg gtaaaatcgt ttccgtcttt attatgggca tattgtccgc
     3601 gctgattgtc gggccgtgcg tcgccccgcc gctggcattt gctttgggct acatcggtca
     3661 gacgggcgat gcggttttag gcggtttggc actttacact ttggcgttgg gcaccggcgt
     3721 tccgctgatt gccatcggca cgttcggcgg gcatatcctg cctaaggcag gcgattggat
     3781 gaatgccgtc aaatacgctt tcggctttat cctgcttgcc gtcgccgttt acctcgccac
     3841 gccgcacttg ccctattatc tcgtcgtcgc gctgtacacg ctgctgatgc tggttcctgc
     3901 ctgtatgctg ctggtcaacg gacgcaggca gaaacgccgt ccgaaagctg tggcattcgc
     3961 attgggcggc atattgctga taggcggcgc gtggttcggc tggcagggcg caaacggcaa
     4021 aacgaccgcg ctgcaccatt tcctgaccct caatccgccg gccgaagcag gcaaatcttc
     4081 ggaacacgga aaaatgtttg ccgatactgc cgcgctgaag gcagcgatgg atacggcgtt
     4141 gaaagaacat cccgacaaac ccgtcgtttt ggatttttat gccgactggt gcatttcctg
     4201 caaagaaatg gcggcttaca cgcttaatca gccggaagtg catcaggcag tcgatatgga
     4261 acgctttttc caaatcgacg taaccgccaa cacgcccgaa catcaggcgt tgttgaaaga
     4321 atacggtctg ttcgggccgc cgggcgtgtt tgtcgtccgc tccgacggca gccgcagcga
     4381 gccgctgctg ggttttgtca aagcagacaa gtttatcgag tggtatgaac aaaaccgctg
     4441 attccgatgt ttcaaatgcc gtctgaagtt ctcagacggc atttttgtca gaaaggaaaa
     4501 cggcaatatc cgctatacac acggaagcag tccaaagatg tgaaaaccgt gtgtataagt
     4561 tagtttgcgt attgaaatta aaagataaaa atacgatgat taaaaaatag gcataagaaa
     4621 agataaacac agccggtgtt tgccggtgtg tgtatctttt gtggaaaaac atcttaatgt
     4681 catgtatttt atggaaaata ataacatgat taaaaaatag tcaatca
//
LOCUS       DAXHPV010000148         4710 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.148, whole genome shotgun sequence.
ACCESSION   DAXHPV010000148 DAXHPV010000000
VERSION     DAXHPV010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4710)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4710)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4710
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.148"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            283..981
                     /locus_tag="ACFM6C_001741"
     CDS             283..981
                     /locus_tag="ACFM6C_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HFC6159165.1"
                     /translation="MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGL
                     VEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRIEH
                     VVWQKEMLPLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTA
                     FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMHTID
                     LLADKVREEQKAAQ"
     gene            complement(1038..2042)
                     /gene="amgK"
                     /locus_tag="ACFM6C_001742"
     CDS             complement(1038..2042)
                     /gene="amgK"
                     /locus_tag="ACFM6C_001742"
                     /EC_number="2.7.1.221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramate/N-acetylglucosamine kinase
                     AmgK"
                     /protein_id="HFC6159166.1"
                     /translation="MQRQIKLKNWLQTVYPERDFDLTFAAADADFRRYFRATFSDGSS
                     VVCMDAPPDKMSVAPYLKVQKLFDMVNVPQVLHADTDLGFVVLNDLGNTTFLTAMLQE
                     QGETAHKALLLEAIGELVELQKASREGVLPEYDRETMLREINLFPEWFVAKELGRELT
                     FKQRQLWQQTVDTLLPPLLAQPKVYVHRDFIVRNLMLTRGRPGVLDFQDALYGPISYD
                     LVSLLRDAFIEWEEEFVLDLVIRYWEKARAAGLPVPEAFDEFYRWFEWMGVQRHLKVA
                     GIFARLYYRDGKDKYRPEIPRFLNYLRRVSRRYAELAPLYALLVELVGDEELETGFTF
                     "
     gene            2112..4520
                     /locus_tag="ACFM6C_001743"
     CDS             2112..4520
                     /locus_tag="ACFM6C_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HFC6159167.1"
                     /translation="MARLFSLKPLVLALGLCFGTHCAAADAVAAEETDNPTAGGSVRS
                     VSEPIQPTSLSLGSTCLFCSNESGSPERTEAAVRGSGEASIPEDYTRIVADKVEGQSQ
                     VQVRAEGNVVVERNRTTLNTDWADYDQSGDTVTAGDRFALQQDGTLIRGETLTYNLEQ
                     QTGEAHNVRMETEHGGRRLQSVSRTAEMLGEGHYKLTETQFNTCSAGDAGWYVKAASV
                     EADREKGIGVAKHAAFVFGGVPIFYTPWADFPLDGNRKSGLLVPSLSAGSDGVSLSVP
                     YYFNLAPNLDATFAPGVIGERGAVFDGQVRYLRPDYAGQSDLTWLPHDKKSGRNNRYQ
                     AKWQHRHDISDTLQAGVDFNQVSDSGYYRDFYGNKEIAGNVNLNRRVWLDYGGRAAGG
                     SLNAGLSVLKYQTLANQSGYKDKPYALMPRLSADWRKNTGRAQIGVSAQFTRFSHDSR
                     QDGSRLVVYPDIKWDFSNSWGYVRPKLGLHATYYSLNRFGSQEARRVSRTLPIVNIDS
                     GATFERNTRMFGGGVLQTLEPRLFYNYIPAKSQNDLPNFDSSESSFGYGQLFRENLYY
                     GNDRINTANSLSAAVQSRILDGATGEERFRAGIGQKFYFKDDAVMLDGSVGKKPRNRS
                     DWVAFASGSIGSRFILDSSIHYNQNDKRAENYAVGASYRPAQGKVLNARYKYGRNEKI
                     YLKSDGSYFYDKLSQLDLSAQWPLTRNLSAVVRYNYGFEAKKPIEVLAGAEYKSSCGC
                     WGAGVYAQRYVTGENTYKNAVFFSLQLKDLSSVGRNPADRMDVAVPGYIPAHSLSAGR
                     NKRP"
BASE COUNT         1131 a         1442 c         1241 g          896 t
ORIGIN      
        1 ttgaaagggg tgtaaccctt ccgaaccagg gcaacgcata gggcggtgct ttatgtgccg
       61 tcctgtgtgt tggaacatca ttagttcccc aacagccgta tccgtctggg gcgacggcgc
      121 gtattgtacg acagaaaccg cttcagacgg catcgggttt gatgccgtcc gaagcggttt
      181 ccccaaacga aaacgtcctt ttccggcggc aaactgtatc aacacgcgga aatgcaataa
      241 aataccaata tccgatttat ttccaacatc acggagagcc gtatgaaatc cagacacctc
      301 gccctcggcg ttgccgccct gttcgccctt gccgcgtgcg acagcaaagt ccaaaccagc
      361 gtccccgccg acagcgcgcc tgctgcttcg gcagccgccg cccccgccgg actggtcgaa
      421 gggcaaaact ataccgtcct tgccaacccg attccccaac agcaggcagg caaggttgaa
      481 gtccttgagt ttttcggcta tttctgcccg cactgcgccc acctcgaacc tgttttgagc
      541 aaacacgcca agtcttttaa agacgatatg tacctgcgta tcgagcacgt cgtctggcag
      601 aaagaaatgc tgccgctggc acgcctcgcc gccgccgtcg atatggctgc cgccgacagc
      661 aaagatgtgg cgaacagcca tattttcgat gcgatggtca accaaaaaat caagctgcaa
      721 aatccggaag tcctcaaaaa atggctgggc gaacaaaccg cctttgacgg caaaaaagtc
      781 cttgccgcct acgagtcccc cgaaagccag gcgcgcgccg acaaaatgca ggagctgacc
      841 gaaaccttcc aaatcgacgg tacgcccacg gttatcgtcg gcggcaaata taaagtcgaa
      901 tttgccgact gggagtccgg tatgcacacc atcgaccttt tggcggacaa agtacgcgaa
      961 gaacaaaaag ccgcgcagta agcccgtttg aaaaatgccg tctgaaactt ggttttcaga
     1021 cggcattttg attgggttta aaacgtaaag cccgtttcca gttcttcatc gccgaccagt
     1081 tcgaccaaga gcgcgtagag cggggcgagt tcggcataac ggcgcgatac gcggcgcagg
     1141 taattgagga aacgcgggat ttcgggacgg tatttgtctt tgccgtcgcg gtagtacagg
     1201 cgtgcgaaga tgcctgcaac cttcaagtgc cgctgcacgc ccatccattc gaaccagcgg
     1261 taaaactcgt caaacgcttc ggggacgggc aggccggcag cccgcgcctt ttcccagtag
     1321 cggataacca agtccaagac aaattcttct tcccattcga taaaggcatc gcgcaacagc
     1381 gacaccaaat cgtaggaaat cgggccgtaa agcgcgtctt ggaagtctaa aacacccggc
     1441 ctgccgcgcg tcagcatcag gttgcggacg ataaagtcgc ggtgcacata gactttgggc
     1501 tgcgccaaca ggggcggcag cagcgtatcg acggtctgct gccaaagttg gcgttgtttg
     1561 aatgttaatt cgcgccccaa ttcttttgcg acaaaccatt ccgggaacag gttgatttcg
     1621 cgcagcatcg tttcacggtc atattcgggc aaaacccctt cacggcttgc cttctgcaat
     1681 tcgaccagct cgccgatggc ctccaaaagc agggctttgt gcgccgtttc gccctgttcc
     1741 tgaagcatcg cggtcaaaaa cgtcgtattg cccaagtcgt tcaataccac aaaccccaga
     1801 tccgtgtccg cgtgcaatac ctgcggcaca ttgaccatgt caaacagttt ctgcactttc
     1861 aaataaggtg cgacactcat cttgtcgggc ggtgcatcca tgcagacgac actgctgccg
     1921 tctgaaaacg ttgcacggaa atagcggcgg aaatcagcat ccgccgccgc aaaagtcaga
     1981 tcgaagtccc gttcgggata aacggtctga agccaatttt tcagtttgat ttgtcgttgc
     2041 ataacagtac taaagcattt caggttacaa taaacgctat tctaactggc aaaccgactt
     2101 gaggggcgat tttggctcgt ttattttcac tcaaaccact ggtgctggca ttgggcctct
     2161 gcttcggcac gcattgcgcc gccgccgatg ccgttgcggc ggaggaaacg gacaatccga
     2221 ccgccggagg aagcgttcgg agcgtgtccg aacccataca gcctaccagc ctgagcctcg
     2281 gttcgacctg cctgttttgc agtaacgaaa gcggcagccc cgagagaacc gaagccgccg
     2341 tccgaggcag cggcgaagca tccatccccg aagactatac gcgcattgtt gccgacaagg
     2401 tggaaggaca gtcgcaggtg caggtgcgtg ccgaaggcaa cgtcgtcgtc gaacgcaacc
     2461 ggacgaccct caataccgat tgggcggatt acgaccagtc gggcgacacc gttaccgcag
     2521 gcgaccggtt cgccctccaa caggacggta cgctgattcg gggcgaaacc ctgacctaca
     2581 atctcgagca gcagaccggg gaagcgcaca acgtccgtat ggaaaccgaa cacggcggac
     2641 ggcggctgca aagcgtcagc cgcaccgccg aaatgttggg cgaagggcat tacaaactga
     2701 cggaaaccca attcaacacc tgttccgccg gcgatgccgg ctggtatgtc aaggccgctt
     2761 ccgtcgaagc cgatcgggaa aaaggcatag gcgttgccaa acacgccgcc ttcgtgttcg
     2821 gcggcgttcc cattttctac accccttggg cggacttccc gcttgacggc aaccgcaaaa
     2881 gcggcctgct tgttccctca ctgtccgccg gttcggacgg cgtttccctt tccgttccct
     2941 attatttcaa ccttgccccc aatctcgatg ccacgttcgc gcccggcgtg atcggcgaac
     3001 gcggcgcggt ctttgacggg caggtacgct acctgcgacc ggattatgcc ggccagtccg
     3061 acctgacctg gctgccgcac gacaagaaaa gcggcaggaa taaccgctat caggcgaaat
     3121 ggcagcatcg gcacgacatt tccgacacgc ttcaggcggg tgtcgatttc aaccaagtct
     3181 ccgacagcgg ctactaccgc gacttttacg gcaacaaaga aatcgccggc aacgtcaacc
     3241 tcaaccgccg tgtatggctg gattatggcg gcagggcggc gggcggcagc ctgaatgccg
     3301 gcctttcggt tctgaaatac cagacgctgg caaaccaaag cggctacaaa gacaaaccgt
     3361 atgccctgat gccgcgcctt tccgccgatt ggcgcaaaaa caccggcagg gcgcaaatcg
     3421 gcgtgtccgc acaatttacc cgtttcagcc acgacagccg ccaagacggc agccgcctcg
     3481 tcgtctatcc cgacatcaaa tgggatttca gcaacagctg gggttacgtc cgtcccaaac
     3541 tcggactgca cgccacctat tacagcctca accgcttcgg cagccaagaa gcccgacgcg
     3601 tcagccgcac tctgcccatt gtcaacatcg acagcggcgc aacttttgag cggaatacgc
     3661 ggatgttcgg cggcggagtc ctgcaaaccc tcgagccgcg cctgttctac aactatattc
     3721 ctgccaaatc ccaaaacgac ctgcccaatt tcgattcgtc ggaaagcagc ttcggctacg
     3781 ggcagctttt tcgtgaaaac ctctattacg gcaacgacag gattaacacc gcaaacagcc
     3841 tttccgccgc cgtgcaaagc cgtattttgg acggcgcgac gggggaagag cgtttccgcg
     3901 ccggcatcgg tcagaaattc tatttcaagg atgatgcggt gatgcttgac ggcagcgtcg
     3961 gcaaaaaacc gcgcaaccgt tccgactggg tggcatttgc ctccggcagc atcggcagcc
     4021 gcttcatcct cgacagcagc atccactaca accaaaacga caaacgcgcc gagaactacg
     4081 ccgtcggtgc aagctaccgt cccgcacagg gcaaagtgct gaacgcccgc tacaaatacg
     4141 ggcgcaacga aaaaatctac ctgaagtccg acggttccta tttttacgac aaactcagcc
     4201 agctcgacct gtccgcacaa tggccgctga cgcgcaacct gtcggccgtc gtccgttaca
     4261 actacggttt tgaagccaaa aaaccgatag aggtgctggc gggtgcggaa tacaaaagca
     4321 gttgcggctg ctggggcgcg ggcgtgtacg cccaacgcta cgttaccggc gaaaacacct
     4381 acaaaaacgc tgtctttttc tcacttcagt tgaaagacct cagcagtgtc ggcagaaacc
     4441 ccgcagacag gatggatgtc gccgttcccg gctatatccc cgcccactct ctttccgccg
     4501 gacgcaacaa acggccctga ccgtcggaaa cccggcagga gcaccgttcc cgcacaagac
     4561 ggcattccac cgacaacccc aaacccgcca tcaaaggcag gattcaaacg ataaggaaag
     4621 aatgatgaaa atcaaagccc tgatgattgc cgccgcattg ctggcagcag ccgatgtcca
     4681 cgccgcaccg caaaaggcaa aaaccgcatc
//
LOCUS       DAXHPV010000149         4628 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.149, whole genome shotgun sequence.
ACCESSION   DAXHPV010000149 DAXHPV010000000
VERSION     DAXHPV010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4628)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4628)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4628
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.149"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(84..308)
                     /locus_tag="ACFM6C_001744"
     CDS             complement(84..308)
                     /locus_tag="ACFM6C_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SlyX family protein"
                     /protein_id="HFC6159168.1"
                     /translation="MDAVQELEHRITELEIQSALQEDVIAGLNAMVAELRQTLDLQQA
                     QLRLLYQKMQDRNPDTQEPYSLRDEIPPHY"
     gene            complement(309..1697)
                     /locus_tag="ACFM6C_001745"
     CDS             complement(309..1697)
                     /locus_tag="ACFM6C_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HFC6159169.1"
                     /translation="MNAVVVAVIVMLVLSLSRVHVVLSLTVGAFVGGAVAGMPLQNIA
                     DAAGQVSQAGIIPVFNKGLEGGAKIALSYAMLGAFAMAITHSGLPQQLAGAVVRKLNR
                     GGMPDSVRSGEGAVKWLLLSIILVMGIMSQNIIPIHIAFIPMIVPPLLLVFNRLKIDR
                     RLIACVITFGLVTTYMFLPYGFGAIFLNEILLGNIHSAAPQLDVKNINVMAAMAIPAL
                     GMLTGLLLAFVHYRKPRLYQSNNADTAGNADAANRPQPSAYRSLAAAAAIAVCFAIQL
                     MYEDSLVLGAMLGFAVFMMLGVINRDKANDVFGEGIKMMAMVGFIMIAAQGFAAVMNA
                     TGHIQPLVESSMAIFGNSKGMAALAMLVVGLLVTMGIGSSFSTLPIIAAIYVPLCVGL
                     GFSPLATVAIVGTAGALGDAGSPASDSTLGPTMGLNADGQHDHIRDSVIPTFIHYNIP
                     LLIAGWIAAMVL"
     gene            complement(1783..2604)
                     /gene="prmC"
                     /locus_tag="ACFM6C_001746"
     CDS             complement(1783..2604)
                     /gene="prmC"
                     /locus_tag="ACFM6C_001746"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HFC6159170.1"
                     /translation="MTFDKWLGLSKLPKNEARMLLQYVSEYTRVQLLTRGGEEMPDEV
                     RQRADRLAQRRLNGEPVAYILGVREFYGRRFTVNPSVLIPRPETEHLVEAVLARLPEN
                     GRVWDLGTGSGAVAVTVALERPDAFVRTSDISTPALETARKNAADLGARVEFAHGSWF
                     DTDMPSEGKWDIIASNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAP
                     DRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKYMKHLK"
     gene            complement(3119..4603)
                     /gene="tldD"
                     /locus_tag="ACFM6C_001747"
     CDS             complement(3119..4603)
                     /gene="tldD"
                     /locus_tag="ACFM6C_001747"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HFC6159171.1"
                     /translation="MPYNQAPDFLCADTMHPTYSAVQARLLEANRLSPELLAKSLCII
                     GAHHVDYADIYCQRTAYESWHLEEGIVKSGSFQINQGVGVRAVSGDKTAFAYADSLCI
                     DSINRSARAVRAIGAAGGKVSAKMPSETRGKPVCSASDPIAGLDSAAKVALLNKVEAI
                     AKAADPRIVQVMAGLTCEYDMVYLARLDGKHAADIRPMVRLNVTVIAKQGERREQGSA
                     GGGGRYDLAYFDENLVHRFVDAAVKQALTNLESRPAPAGEMTVVLGNGWPGVLLHEAV
                     GHGLEGDFNRKGTSVFSGRIGERVAAKGVTVVDQGDIAGRRGSLNIDDEGNETRRTVL
                     IEDGILVGYMQDETNARLTGTQSTGNGRRESYASAPMPRMTNTFMENGSYEPEEIIAS
                     IDKGIYAVNFGGGQVDITSGKFVFSASEAWWVEGGRLQYPVKGATIIGNGPEVLKHVS
                     MIGNDTALDSGVGVCGKEGQSVPVGVGQPTLRIDAGLTVGGSAI"
BASE COUNT         1053 a         1401 c         1218 g          956 t
ORIGIN      
        1 ttaatccact atatatctta ggtttgcatc ggcaaaatat tcaaacacag ccttttttaa
       61 ggaaatccgg atacggcggc acatcaataa tgcggcggaa tctcgtcgcg cagggaatac
      121 ggctcttgcg tgtcgggatt cctgtcctgc attttttgat acagcagcct caactgagcc
      181 tgctgcaaat ccagcgtctg ccgcaattcc gccaccatcg cgttcaggcc ggcgattacg
      241 tcctcctgaa gcgcggattg gatttccagc tctgtgatgc ggtgttccaa ctcttgaacc
      301 gcgtccattt acagcaccat cgcggcaatc cagccggcaa tcagcagcgg gatattgtag
      361 tggatgaagg tcgggataac ggaatcgcgg atgtggtcgt gctgcccgtc ggcgttcagc
      421 cccatcgtcg ggcccagcgt ggaatcggac gcaggcgaac cggcatcgcc caacgccccc
      481 gccgtgccga caatggcgac ggtggcaagc ggcgaaaaac ccaaaccgac acacaaaggc
      541 acataaatcg cggcaataat cggcaaagtg gaaaaggacg aaccgatgcc catcgttacc
      601 aaaagcccca ccaccagcat cgccaatgcc gccatacctt tgctgttgcc gaatatcgcc
      661 atactgcttt ccaccagcgg ctggatatgc ccggtcgcat tcatcacggc ggcaaaaccc
      721 tgcgcggcaa tcataatgaa gccgaccatc gccatcatct tgataccttc gccgaatacg
      781 tcgtttgcct tgtcgcggtt gatgaccccc aacatcataa atacggcgaa accgagcatc
      841 gcgcccaaca ccagcgagtc ttcatacatc aactggatgg caaaacatac ggcaatggcg
      901 gcggcggcgg ccaggctgcg gtaggcggac ggctgcggac ggtttgccgc atcggcgttg
      961 cccgccgtat cggcattgtt gctttggtac aggcgcggtt tgcggtaatg gacaaacgcc
     1021 agcaggagtc cggtcagcat tcccaacgcg ggaatcgcca ttgccgccat tacgttgatg
     1081 tttttcacat caagctgcgg cgcggcggaa tggatgttgc ccaacaggat ttcgttcaaa
     1141 aaaatcgcgc cgaagccgta aggcaggaac atataggtcg taaccagccc gaaagtaatg
     1201 acgcacgcaa tcagacggcg gtcgattttc aggcggttga acaccaaaag cagcggcgga
     1261 acaatcatcg ggataaaggc gatgtggata ggtatgatgt tctgactcat aatgcccatc
     1321 acaaggatga tggaaagcag cagccatttg accgcgccct cgcccgaacg cacgctgtcg
     1381 ggcataccgc cccggttcag cttgcggacg accgcgccgg caagctgctg cggcaggccg
     1441 gaatgggtaa tcgccattgc aaacgcgccg agcatcgcat aagaaagcgc aatcttcgca
     1501 ccgccttcca aacctttgtt gaacacgggg ataatccccg cctgactgac ctgtcccgcc
     1561 gcatcggcaa tgttttgcag cggcataccc gccaccgcgc cgccgacaaa cgcgccgacc
     1621 gtcaggctca ataccacgtg cacgcgcgac agcgacagca ccagcataac gattacggca
     1681 actacgactg cattcattgt ttatcgctcc aaacctataa atgtttacat atcgaaacac
     1741 atcataaccc aataatggaa aacccgccaa ttttgcaaac aattatttca aatgcttcat
     1801 atacttcccc agcgtaaccc tgtccaaacc cgccaagtcc ggcagggttt ccactcctga
     1861 aaaaccattc tccgccaaca cgccgcgcac cgccgcgccc tgatcgaaac cgtgttccaa
     1921 caacaaaaaa ccgccttccg ccaaacggtc gggcgcgcct tgcgccaagg tgcggatgca
     1981 gcttaggccg tctgaaaagt cggtcagcgc gatttgcggc tcaaaccgca aatcgccttg
     2041 caacaaatgt ttatcgccgt tttcgatata gggcgggttg gacgcgataa tgtcccattt
     2101 cccttcagac ggcatatcgg tgtcgaacca cgaaccgtgt gcaaattcga cccgcgcgcc
     2161 caaatccgcc gcatttttcc gcgccgtttc aagggcgggc gtgctgatgt cggatgtgcg
     2221 cacaaacgca tcggggcgtt cgagtgcgac ggttacggca accgcgccgc tgcccgtccc
     2281 caaatcccac acgcgcccgt tttcgggcag gcgcgccaat acggcttcga ccaaatgttc
     2341 ggtttcgggg cgcggaatca gcacgctcgg attgactgta aagcgtctgc cataaaattc
     2401 gcgcacacct aaaatatagg caaccggctc gccgttcaga cggcgttgcg ccagcctgtc
     2461 cgcccgctgt cggacttcgt ccggcatttc ttccccgccc cgcgtcaaca actgcacgcg
     2521 cgtatattcc gaaacatatt gcagcagcat tcttgcttca tttttaggca gttttgacaa
     2581 gcccaaccat ttatcaaacg tcatttttat cccgtctgcc gctgatgcgg cttttctttc
     2641 cttattcttt ccggcaaacg taccgatggt ggcaaccgca aatgcggcat accacaaata
     2701 aaatcctgca ccgtagcgca caatatccga tgtattccct gcttcatcga cgtatacggc
     2761 tttcacactg aaagccacca acgccaagcc ccaaagtgcc gcatggacag gcacgacctt
     2821 cttccgcaac gccagcaaaa caatggccgc caaccaaaca taattcgcat agaccgcaca
     2881 atacctgata tccaaagaag caaatatcga ccccaaaatc aaaacggtca aaccctccat
     2941 gcttccatga ttgcccaaat aaaatgcaac attggataaa gacgctatcc acagggcaac
     3001 cgacaccagc aacatcacta tgggaaaact tggtttccga ttctgttcct gcatggtttt
     3061 atcctaatgt aaaaggccgc ctgaaaacct ttcagacggc atcgtgccgg attccgcgtc
     3121 agattgcgct gccgccgacg gtcagtccgg catcaatccg caaagtcggt tgccccacgc
     3181 cgacggggac gctctgccct tctttgccgc acacgccgac accgctgtcg agcgcagtat
     3241 cgttgcctat catggaaacg tgtttcagca cttcggggcc gttgccgatg atggtcgcgc
     3301 ctttgacggg atattgcagc ctgccgcctt ccacccacca cgcttcggac gcactgaaca
     3361 cgaacttgcc gctggtaatg tccacttgtc cgccgccgaa attgacggcg taaatgccct
     3421 tgtcgatgga cgcgatgatt tcttccggct catagctgcc gttttccata aaggtattgg
     3481 tcatgcgcgg cataggggcg gaagcgtaac tttcgcggcg gccgttgccg gtggactgcg
     3541 tacccgtcag gcgggcattg gtttcgtcct gcatatagcc gactaaaatg ccgtcttcaa
     3601 tcaatacggt gcggcgggtt tcgttgcctt cgtcgtcgat gttgagcgaa ccgcgccggc
     3661 cggcaatatc accctgatcc acaacggtaa cgcctttggc ggcgacgcgc tcgcctattc
     3721 tgccggaaaa gacgctggtt cccttgcggt tgaaatcgcc ttccaaaccg tgtccgaccg
     3781 cttcgtgcag caacacgccc ggccagccgt tgcccaaaac gacggtcatt tcgccggcgg
     3841 gcgcggggcg ggattcgagg ttggtgagtg cctgtttgac ggcggcatcg acaaaccgat
     3901 gaaccaagtt ttcatcgaaa taagccaagt cgtagcgtcc gccgccgccc gcgctgccct
     3961 gttcgcggcg ttcgccctgt ttggcgataa cggtaacgtt caggcgcacc atcgggcgga
     4021 tgtcggcggc gtgtttgccg tccagacggg cgaggtaaac catatcgtat tcgcaggtca
     4081 aaccggccat cacttgcacg atgcgcggat cggcggcttt ggcgattgct tccactttgt
     4141 tcaacagcgc gactttggcg gcggaatcga ggccggcaat ggggtcggac gcggaacaaa
     4201 ccggcttgcc gcgcgtttca gacggcattt tggcggacac cttgccgcct gccgccccaa
     4261 tcgcgcggac ggcgcgggcg gaacggttta tcgaatcgat gcacaggctg tcggcgtagg
     4321 caaaggcggt tttgtcgccc gaaacggcgc gcacgcccac gccctgattg atttggaagc
     4381 tgcccgattt gacgatgccc tcttccaaat gccagctttc ataagcggtg cgctggcagt
     4441 agatgtcggc gtaatcgacg tggtgcgcgc cgatgatgca caggcttttg gcgagcagtt
     4501 cgggggaaag gcggttggct tcgagcagcc gcgcctgtac ggcggaatag gtcggatgca
     4561 tagtgtcggc gcataaaaaa tcaggggctt gattatacgg catttgttat atagtggatt
     4621 aacaaaaa
//
LOCUS       DAXHPV010000150         4587 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.150, whole genome shotgun sequence.
ACCESSION   DAXHPV010000150 DAXHPV010000000
VERSION     DAXHPV010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4587)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4587)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4587
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.150"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..126)
                     /locus_tag="ACFM6C_001748"
     CDS             complement(<1..126)
                     /locus_tag="ACFM6C_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4177 domain-containing protein"
                     /protein_id="HFC6159172.1"
                     /translation="MKEYKVVIYQESQLSSLFFGAAKVNPVNFSAFLNKQTPEGWR"
     gene            complement(201..1544)
                     /gene="argG"
                     /locus_tag="ACFM6C_001749"
     CDS             complement(201..1544)
                     /gene="argG"
                     /locus_tag="ACFM6C_001749"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HFC6159173.1"
                     /translation="MSQNHTILQNLPVGQKVGIAFSGGLDTSAALLWMKLKGALPYAY
                     TANLGQPDEDDYNAIPKKAMEYGAENARLIDCRAQLAHEGIAAIQCGAFHVSTGGIAY
                     FNTTPLGRAVTGTMLVSAMKEDDVNIWGDGSTYKGNDIERFYRYGLLTNPALKIYKPW
                     LDQQFIDELGGRHEMSEFLIANGFNYKMSVEKAYSTDSNMLGATHEAKDLEFLNSGIK
                     IVKPIMGVAFWDENVEVSPEEVSVRFEEGVPVALNGKEYADPVELFLEANRIGGRHGL
                     GMSDQIENRIIEAKSRGIYEAPGMALFHIAYERLVTGIHNEDTIEQYRINGLRLGRLL
                     YQGRWFDSQALMLRETAQRWVAKAVTGEVTLELRRGNDYSILNTESPNLTYQPERLSM
                     EKVEGAAFTPLDRIGQLTMRNLDITDTRAKLGIYSQSGLLSLGEGSVLPQLGNKQ"
     gene            1871..2011
                     /locus_tag="ACFM6C_001750"
     CDS             1871..2011
                     /locus_tag="ACFM6C_001750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159174.1"
                     /translation="MQTAALKQTLPEKRKLDPLPNPLPWEREQITAPSTFSDGIGKET
                     HL"
     gene            2008..2808
                     /locus_tag="ACFM6C_001751"
     CDS             2008..2808
                     /locus_tag="ACFM6C_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003705157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HFC6159175.1"
                     /translation="MNAFNLTIIGDEILHGSRQDKHFAFFKSLLESKGLKLNQVQYLP
                     DEPDLLVRQLRRSFSDGIPTFVTGGIGATPDDHTRQAAAAALDLPVVRHPEAAKFIEG
                     VTRKRGEPLDSPEHAQRLKMADFPQGAELVPNPFNNIAGFSIREHYFFPGFPVMAHPM
                     AEWVLDTYYVGRFNQTKRGSRSVYVFEQPESRITPLMEHIEQTYPGVRSYSLPSVGWT
                     HSDGTQVKPHIEFGIKAEGEAVNLLDAAWAEVLHSLDGLGAELKNRVN"
     gene            2848..3834
                     /locus_tag="ACFM6C_001752"
     CDS             2848..3834
                     /locus_tag="ACFM6C_001752"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S49 family peptidase"
                     /protein_id="HFC6159176.1"
                     /translation="MQYRIRRENEAPEAKNTGETLWERDIMREVLLSAYQDRRRERMW
                     KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKD
                     GMEAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASG
                     CYYIAAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFS
                     PETPEQSKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLV
                     DGLGNIYSVARDVVKAPDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR"
     gene            4491..4587
                     /locus_tag="ACFM6C_001753"
                     /pseudo
     CDS             4491..4587
                     /locus_tag="ACFM6C_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
BASE COUNT         1070 a         1179 c         1276 g         1062 t
ORIGIN      
        1 ccgccagcct tcgggggttt gtttgttgag gaacgcgctg aaattgacgg ggttgacctt
       61 tgccgcgccg aaaaacaggc tggacaactg gctttcctga taaatgacga ctttgtattc
      121 tttcatagga ttccttttaa cataagggat catcttttca gacgacccct taagttgcta
      181 atgatgcaaa acagcaaacc ttattgctta ttgcccaact gcggtaatac cgagccttcg
      241 cccagcgaca gcaaaccgct ttgcgagtag atgcccagtt tggcgcgggt gtcggtgatg
      301 tcgaggttgc gcatcgtgag ctgtccgatg cggtcgagcg gggtaaacgc cgcaccttcg
      361 actttttcca tactcaggcg ttcgggttgg taggtcaggt tgggcgattc ggtgttcaga
      421 atcgagtagt cgttgccgcg ccgcagttcg agggtgactt cgccggtaac ggctttggcg
      481 acccagcgtt gggcggtttc gcgcaacatc aaggcttggc tgtcgaacca gcggccttgg
      541 tagagcaaac ggccgaggcg caggccgttg atgcggtatt gttcgatggt gtcttcgttg
      601 tggatgccgg tcaccaagcg ttcgtaggcg atgtggaaca acgccatacc cggggcttcg
      661 tagatgccgc gcgatttggc ttcgatgatg cggttttcga tttggtcgct catacccaag
      721 ccgtggcggc cgccgatgcg gttggcttcg aggaagagtt cgacggggtc ggcgtattct
      781 ttgccgttca gtgcaaccgg cacgccttct tcaaagcgca cgctgacttc ttcggggctg
      841 acttcaacgt tttcgtccca aaaggcaacg cccataatgg gtttgacgat tttgatgccc
      901 gagttcaaaa attccaagtc tttggcttcg tgggtcgcgc cgagcatatt ggaatcggtg
      961 gagtaggctt tttcaaccga cattttgtag ttgaagccgt tggcaatcag aaattcgctc
     1021 atttcgtgac ggccgccgag ttcgtcgata aattgctggt cgagccaggg tttgtagatt
     1081 ttcagcgcgg gattggtgag caaaccgtag cggtagaaac gctcgatgtc gttgcctttg
     1141 taggtgctgc cgtcgcccca gatgtttacg tcgtcttctt tcattgcgga aacaagcatc
     1201 gtgccggtta cggcgcggcc cagaggcgtg gtgttgaaat aggcgatgcc gccggtggaa
     1261 acgtggaacg cgccgcattg gatggcggcg atgccttcgt gtgccaactg cgcgcggcag
     1321 tcgattaagc gggcgttttc cgcaccgtat tccatcgctt ttttgggaat ggcgttgtag
     1381 tcgtcttcat cgggctgacc gaggttggca gtgtaggcat aaggcagtgc gcctttgagt
     1441 ttcatccaca acagcgcggc ggaggtatca agtccgccgg agaaggcgat gccgactttc
     1501 tgaccgacgg ggaggttttg taaaatagta tggttttggc tcataagggt atccttcgga
     1561 cttggaaaaa ggagttcgtc gtgtttcctt ttcgattgaa accccgccac ttggacatct
     1621 gtccttcggg gcggtagaat cagactttat ttgggagggg cgtaatccct ttcaaatcag
     1681 gacggcacat agggcggtgc tttatgtgtc gtcccgtgtg ttgaaacatt atcttataaa
     1741 tataacccat tgtcagccgt taaggctgtc tgaaaagaag ctttgcccgt ttcgctgaaa
     1801 atcttttcag acggtcttta cgccatcctc aacctgactc cctcccctgc gggggagggt
     1861 tggggagagg gtgcagacag cagcccttaa gcaaacgctg cctgaaaaac gcaagctcga
     1921 ccctctccct aaccctctcc catgggagag ggaacaaatc acagcaccat cgacattttc
     1981 agacggcatc ggtaaagaaa cccatctatg aacgcgttca acctcaccat catcggcgac
     2041 gaaatcttac acggcagccg ccaagacaag catttcgcct ttttcaaatc cctgctcgaa
     2101 tccaaagggc tgaagctcaa tcaggtgcaa tatctgcccg acgaacccga tttgctggtc
     2161 aggcaactgc gccgcagctt ttcagacggc ataccgacgt ttgttaccgg cggcatcggc
     2221 gccacgcccg acgaccacac gcgccaagcc gcagcggctg ctttggattt gcctgtcgtc
     2281 cgccatcctg aagccgccaa gtttatcgaa ggcgtaaccc ggaaacgcgg tgagccgctc
     2341 gattcgcccg aacacgccca acgcctgaag atggcggatt ttccccaagg cgcggaattg
     2401 gtgcctaatc cgtttaataa tatcgccgga ttttccattc gcgagcatta tttcttccct
     2461 ggttttcctg tgatggcgca cccgatggcg gaatgggttt tggatactta ttacgtcggc
     2521 cgcttcaacc aaaccaaacg cggcagccgc agcgtgtatg tgtttgagca gcccgaatcg
     2581 cgcattacgc cgcttatgga gcatatcgag caaacttatc ccggtgtgcg ttcgtacagc
     2641 ctgcccagcg tcggttggac gcattcagac ggcacgcagg tcaaaccgca cattgagttc
     2701 ggcatcaaag ccgaaggaga agccgtcaac cttttggacg cggcgtgggc ggaagtgttg
     2761 cacagcttgg acggattggg agcagagctg aaaaatcggg taaactgaaa accgtttgcc
     2821 caaatcggac gatatttaag gaaaaccatg caataccgaa tcagaagaga aaacgaagca
     2881 cccgaagcaa aaaatacggg ggaaacctta tgggagcgcg acatcatgcg cgaagtgctg
     2941 ctgtccgcct atcaggacag gcgcagggag cggatgtgga aaaacatctg gcgtgccgtc
     3001 agcaccctga ttctggttgc cctgattgcc ggtattttcc gaaaagacga agccgcattg
     3061 cagttggcgg gcaacacgcc gcataccgca gtcgtcaacc tgtacggcga aatcggcaac
     3121 ggtgtagaag accaggtcaa aaaactcaaa gacggtatgg aggccgccta caaaaacccg
     3181 caggcaaaag ccatcgtcat ccgcgccaac agccccggcg gttcgcccgt cgtctccaac
     3241 accgcttttg aagaaatacg ccgtctgaag gcgcagcacc ccggcattcc cgtttatctc
     3301 gtggcggaag atatgtgcgc gtccggctgc tactacatcg cggcggcggc ggacaaaatc
     3361 tatgccgacc cgtccagcat cgtcggcagc atcggcgtta tcggcagcag tttcgacgcg
     3421 accggcctga tggaaaaaat cggcgtgaaa cgcagggtta aaattgcagg cagcaacaaa
     3481 ggcatgggcg atccgttttc gcccgaaacg cccgaacagt cgaaaatctg ggaagaaatg
     3541 ctgaccggca tacacggcga attcatcaaa gccgtcaaaa ccggacgggg cggccgcctc
     3601 aaattccgac aatatcccga cgtgttcagc ggtcgcgtgt acacaggcgc ggatgcgctg
     3661 aaagtcgggc tggtggacgg actcggcaat atttacagcg tggcgcgaga cgtggtcaaa
     3721 gcccccgatg tggtggatta cactccgaag gacgatttcg gcagaatctt gggcagacgc
     3781 ttcggcgcag aactcaaagc aagcgtgcgc gaagccctgc aggccgtccg gtagcgttgt
     3841 ttacagtatt tctaagggaa taccaaaata aaaatataca caaaaacact cacctcccca
     3901 gtatgctgcc actaagtcag ccgcgtcact atttaccgtg cacttaaagc cgtaaaaggc
     3961 aggttgtccc cgggaggttt tgtgcatcct gataccgatc ggttgttgtt gctcaaagga
     4021 cagaaggccg ctgataaacg agattacctg tttgtcgcta ttgacgattt ttatactctg
     4081 ccattttgcc agacaaaacc gcagacagtg ctgccaagtt tctgaccgaa catctggccg
     4141 acccctgctt gtacctgatt gagtacgttt actctgacaa tgataggtaa tataaagagc
     4201 cgtccaacat gctttcggtg cagcttgtta taataatggg attggttgga ggcttgcccg
     4261 atttgcttgt ccgcagacca acggtaaggc ggagcgggtt atccgtacct tgatggagat
     4321 gtggcatgag gaacagtcgt ttgacagtcc ggaacatcgg caaaaggagt tgtgctgctt
     4381 tattaattta ggggctgccc tagatcacta gggaaattca aattaagtta gaattatccc
     4441 tatgagagaa agtcgtctaa gccggtataa acaaaataaa ctcattttgt tatcgtggct
     4501 atgatgtatt ggatgcgggc gaatttagcc atttccgtat caatcacagc acacattttg
     4561 ccgaacgaca aaaccatatt aatggaa
//
LOCUS       DAXHPV010000151         4578 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.151, whole genome shotgun sequence.
ACCESSION   DAXHPV010000151 DAXHPV010000000
VERSION     DAXHPV010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4578
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.151"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(27..167)
                     /locus_tag="ACFM6C_001754"
     CDS             complement(27..167)
                     /locus_tag="ACFM6C_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159177.1"
                     /translation="MPSENLSDGIFYQSSHIFYQGCKIYPKQQKPPCRHSRKSGNLEH
                     KI"
     gene            complement(185..1123)
                     /locus_tag="ACFM6C_001755"
     CDS             complement(185..1123)
                     /locus_tag="ACFM6C_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFC6159178.1"
                     /translation="MLELNGLCKRFGGKTVADDICLTVGRGKILAVLGRSGCGKSTLL
                     NMIAGIIRPDGGEIRLNGENITRMPPEKRRISLMFQDYALFPHMSALENAAFGLKMQK
                     MPKAEAERLAMAALAEVGLENEAHRKPEKLSGGEKQRLALARALVVRPSLLLLDESFS
                     SLDTHLRDRLRRMTAERIRNGGIPAVLVTHSPEEACTAADEIAVMHEGKILQCGTPET
                     LVQTPAGVQVARLMGLPNTDDDRHIPQNAVRFDQDGMECRVLSRTCLPESFSLSVLHP
                     EHGILWLNLDMPHAGEISGNDTVRIHIEDREIVRFR"
     gene            complement(1132..2007)
                     /locus_tag="ACFM6C_001756"
     CDS             complement(1132..2007)
                     /locus_tag="ACFM6C_001756"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HFC6159179.1"
                     /translation="MPTVHFTESVSKQDLDALFEWAKASYGAESCWKTLYLNGLPLGN
                     LSPEWAERIKKDWEAGCSESSDGIFLNADGWPDMGRRLQHLARGWHCAGLLDGWRNEC
                     FDLTDGGGNPLFTLERAAFRPFGLLSRAVHLNGLTESDGRWHFWIGKRSPHKAVDPDK
                     LDNIAAGGVSGGEMPSEAVCRESSEEAGLDKTLFPLIRPVSRLHSLRPVSRGVHNEIL
                     YVFDAVLPETFLPENQDGEVACFEKMDIGSLVAAMLSENMMHDAQLVTLDAFCRYGLI
                     DVAHPLSEWLDGIRL"
     gene            complement(2196..2272)
                     /locus_tag="ACFM6C_001757"
     tRNA            complement(2196..2272)
                     /locus_tag="ACFM6C_001757"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2236..2238),aa:Met,seq:cat)
     regulatory      2422..2521
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            2612..4513
                     /gene="thiC"
                     /locus_tag="ACFM6C_001758"
     CDS             2612..4513
                     /gene="thiC"
                     /locus_tag="ACFM6C_001758"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HFC6159180.1"
                     /translation="MTTPKKTAKTSGNEARELADLSEDIGIRFKYPNSERVYLQGSRD
                     DIRVPLREIRQDDTYTAQGTEANPPIPVYDTSGVYGDPAAHIDLKHGLPHIRTAWLDE
                     RGDTEILPKLSSEYGTERAHDPKTAHLRFNQITRPRRAKSGSNVTQLHYARQGIITPE
                     MEFVAIRERLKLDELSQKPEYAKLLKQHAGQSFGANIPTHPDQITPEFVRREIAAGRA
                     IIPANINHPELEPMIIGRNFRVKINGNLGNSAVTSSLTEEVEKMVWSLRWGADTIMDL
                     STGAHIHETREWIIRNAPVPIGTVPIYQALEKTGGIAEDLTWDLFRDTLIEQAEQGVD
                     YFTIHAGVLLRYVPMTANRLTGIVSRGGSIMAKWCLAHHRENFLYTHFDEICEIMKAY
                     DVSFSLGDGLRPGCIADANDESQFAELHTLGELTDKAWKHDVQVMIEGPGHVPLQRVK
                     ENMTEELQHCFEAPFYTLGPLVTDIAPGYDHITSGIGAANIGWYGTAMLCYVTPKEHL
                     GLPDKEDVRTGIITYKLAAHAADLAKGWPGAQLRDNALSKARFEFRWRDQFRLSLDPE
                     RAESFHDETLPAEGAKIAHFCSMCGPKFCSMKITQEVRDYADKQKAQRQGMEEKAVEF
                     VKKGAKIYS"
BASE COUNT         1102 a         1322 c         1207 g          947 t
ORIGIN      
        1 gaaacttgtc gggaaaaacg gtttctttag attttatgtt ctagattccc gcttttgcgg
       61 gaatgacggc agggtggttt ctgttgtttc ggataaattt tgcagccctg ataaaaaata
      121 tggctgcttt ggtaaaaaat gccgtctgaa aggttttcag acggcatttt gtttttaaga
      181 agcatcagcg gaagcggacg atttccctgt cttcgatatg gatgcgtacc gtatcgtttc
      241 ccgatatttc accggcgtgc ggcatatcga ggttcagcca caggatgccg tgttccggat
      301 ggaggacgga caggctgaac gattcgggca aacaggtacg ggataatacg cggcactcca
      361 tgccgtcttg gtcgaaacgc accgcatttt gcggaatatg gcggtcatcg tcggtattgg
      421 gcaaacccat cagtcgggcg acctgcacgc cggcaggcgt ttgaaccaag gtttcgggcg
      481 taccgcattg aaggattttc ccctcgtgca tgacggcgat ttcgtccgcc gccgtgcagg
      541 cctcttcggg cgaatgcgtt accaaaacgg cagggatgcc gccgtttcgg atacgttcgg
      601 cagtcatgcg gcgcagccgg tcgcgcaaat gcgtgtccaa actggaaaac gattcgtcca
      661 gcaacagcaa ggaagggcgg acaaccaaag cgcgcgccag tgccaaccgt tgcttctcgc
      721 ctccggaaag tttttcaggc ttgcggtgcg cctcattttc cagtccgact tcggcaagtg
      781 ccgccatggc aaggcgttcg gcttcggctt tcggcatttt ttgcattttc aaaccgaatg
      841 ccgcattttc cagcgcactc atatggggaa acagcgcgta atcttgaaac atcagcgaaa
      901 tacggcgttt ttcgggcggc atacgggtaa tgttttcccc gttcagccga atttcgccgc
      961 cgtccggacg gataatcccc gcaatcatat tcagcagtgt tgattttccg cagcccgacc
     1021 gccccaaaac ggcgagtatt ttgccgcgcc cgacagtcag gcagatatcg tcggcaaccg
     1081 ttttgccgcc gaagcgtttg cagagtccgt tcagttcaag catggcgcat cctataaacg
     1141 tatgccgtcc agccactcgg acagcggatg ggcgacatca atcagaccgt aacggcaaaa
     1201 cgcgtccagc gtaaccagtt gcgcgtcgtg catcatgttt tccgacaaca tggcggcaac
     1261 caggctgccg atgtccattt tctcaaaaca cgcaacctcg ccatcctgat tttcaggcag
     1321 gaaggtttcg ggcaggacgg catcgaacac atacaggatt tcattgtgca caccccggct
     1381 gacggggcgc aggctgtgca gccgcgatac cgggcggatg agcggaaaca gcgttttatc
     1441 caaaccggct tcttcgctgc tttcgcggca cacggcttca gacggcattt cgccgccgga
     1501 aacaccgccg gcggcaatat tgtcgagttt gtcgggatcg actgctttgt gcggactgcg
     1561 cttgcctatc cagaaatgcc atcggccgtc cgattcggtc agtccgttga gatggacggc
     1621 gcggctgagc agtccgaacg gacggaaagc ggcgcgttcg agcgtgaaca aggggtttcc
     1681 gccgccgtcg gtcaggtcga aacactcgtt gcgccagccg tccaacagtc ccgcacagtg
     1741 ccaaccgcga gcgaggtgct gcaagcgtct gcccatatct ggccagccgt ccgcattcag
     1801 gaaaatgccg tctgaagact ccgagcagcc tgcctcccag tcttttttga tgcgctccgc
     1861 ccattccggc gacaggttac ccaaaggcag accgttcaga tacagcgttt tccagcaact
     1921 ttctgcaccg taacttgctt ttgcccactc gaacagggca tcaaggtctt gtttgctgac
     1981 ggattcggta aaatggacgg tcggcatagt cggctttctt gaacacaatg cggaagattg
     2041 tagccaaacc gcctgaattt gcaaccgcaa acagacggcg ggctgccgtt ccgatattgc
     2101 ggcaggaggg aaaatccggc aaaaaacgga ggcggcagga aacaggaaac aggcaaaaca
     2161 aaacccctcg gcattgaacc gaggggtttg atatttggtt gcgggagcag gattcgaacc
     2221 tacgaccttc gggttatgag cccgacgagc taccatgctg ctccatcccg cgtcagaaga
     2281 tgaaactata cggcagattt tttatgttgt caaacattat ttccgcgaaa aatcataaaa
     2341 ttttgccgtc cggcggttta tgcctgattt gaaatattat tttctttaca aaagttcatg
     2401 ttcgtgattt aattttggtt aacattgaaa caggggtgct gcctgatgtt taggcggctg
     2461 agaaataccc tttacacccg atcgggataa tacctgcgtg gggagttttc acggattctg
     2521 cttttcagac ggcattggtt ttcaaatgcc gtctgaaaac gcaaaacgct cctgtttctt
     2581 tattctaaac gagaaaacag gagcattttt tatgactacg ccaaaaaaaa ccgccaaaac
     2641 ttccggcaac gaagcgcgcg agcttgccga cttgagcgaa gacatcggca tccgctttaa
     2701 atatccgaac tcggagcgcg tgtatctgca aggcagccgc gacgacatcc gcgtgccttt
     2761 gcgcgaaatc cgtcaggacg acacctacac ggcgcaaggc acggaagcca acccgccgat
     2821 tcccgtctat gacaccagcg gcgtgtacgg cgatccggcg gcgcacatcg acctgaaaca
     2881 cggtttgccg cacatccgca cggcgtggct ggacgaacgc ggcgataccg aaatcctgcc
     2941 caagctctcc agcgaatacg gcaccgaacg cgcacacgat ccgaaaaccg cccatctgcg
     3001 cttcaaccaa atcacccgcc cgcgccgcgc gaaaagcggc agcaacgtaa cccagcttca
     3061 ctacgcgcgc caaggcatta tcacgcccga aatggagttt gtcgccatac gcgaacgttt
     3121 aaaattagac gaattgtccc aaaaaccgga atacgccaag ctcttgaaac aacacgcagg
     3181 gcaaagtttc ggcgcgaata tcccgaccca tcccgaccaa atcacgcctg aattcgtgcg
     3241 ccgagaaatc gccgccggac gcgcgattat tcccgccaac atcaaccacc ccgaactcga
     3301 accgatgatt atcggccgca acttccgcgt caaaatcaac ggcaacttgg gcaactccgc
     3361 cgtaacctcc agcctgaccg aagaagtcga aaaaatggtg tggtcgctgc gttggggtgc
     3421 ggacacgatt atggatttgt ccaccggcgc gcacatccac gaaacacgcg aatggattat
     3481 ccgcaacgcg cccgtcccca tcggcaccgt gccgatttac caagcgttgg aaaaaaccgg
     3541 cggcatcgcc gaagatttga cttgggattt gttccgcgac accctcatcg aacaggcgga
     3601 gcaaggcgtg gactatttca ccatacacgc gggcgtgttg ctgcgttatg tgccgatgac
     3661 cgccaaccgc ctcaccggca tcgtctcgcg cggcggttcg attatggcga aatggtgttt
     3721 ggcacatcat cgggaaaatt tcctctacac gcatttcgac gaaatctgcg aaattatgaa
     3781 agcgtatgac gtatcattca gcctcggcga cggcctgcgc cccggctgca ttgccgatgc
     3841 caacgacgaa tcccagttcg ccgaattgca caccttgggc gaattgaccg ataaagcgtg
     3901 gaaacacgac gtacaagtca tgatcgaagg ccccgggcat gtaccgctgc aacgcgtcaa
     3961 agaaaacatg accgaagagc tgcaacactg ctttgaagca cctttttaca cgctcggtcc
     4021 gctcgttacc gacatcgcac ccggctacga ccacatcacc tcgggcatag gcgcagccaa
     4081 tatcggctgg tacggcaccg ccatgctctg ctacgtgacc ccgaaagagc atctcggcct
     4141 gcccgacaaa gaagacgtgc gcaccggcat cattacctac aaactcgccg ctcacgccgc
     4201 cgacctcgcc aaaggctggc cgggtgcgca attacgcgac aacgccctga gcaaggcgcg
     4261 tttcgaattc cgctggcgcg accaattccg cttaagcctc gaccccgaac gtgccgagag
     4321 cttccacgac gaaaccctgc ctgccgaagg cgcgaaaatc gcccacttct gctcgatgtg
     4381 cggccccaaa ttctgctcga tgaaaatcac gcaggaagtg cgcgactacg ccgacaagca
     4441 aaaagcccaa cggcagggaa tggaggaaaa agcggtcgag ttcgtcaaaa aaggcgcgaa
     4501 gatttacagt tgaaacgtca agcaaaaaat gccgtctgaa acccggaaaa aaggcttcag
     4561 acggcattct ttcgcttg
//
LOCUS       DAXHPV010000152         4559 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.152, whole genome shotgun sequence.
ACCESSION   DAXHPV010000152 DAXHPV010000000
VERSION     DAXHPV010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4559)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4559)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4559
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.152"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(430..1476)
                     /gene="recA"
                     /locus_tag="ACFM6C_001759"
     CDS             complement(430..1476)
                     /gene="recA"
                     /locus_tag="ACFM6C_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HFC6159181.1"
                     /translation="MSDDKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGS
                     LGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPV
                     YARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMG
                     DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFY
                     SSVRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELID
                     IGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEIADEIDAKIRALNGVEMHIT
                     EGKLDETDGERPEE"
     gene            1730..2494
                     /gene="aroD"
                     /locus_tag="ACFM6C_001760"
     CDS             1730..2494
                     /gene="aroD"
                     /locus_tag="ACFM6C_001760"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HFC6159182.1"
                     /translation="MCSCLVVKNTVIGSGRTKIAVPLVARDAAELSAVLEQIKNMPFD
                     IAEFRADFLECAGSIGEVLRHTQTVRDALPDKPLLFTFRRHGEGGSFPCSDDYYFELL
                     DALIESRLPDIIDIELFSGETAVRRAVADAQKNGIAALLCNHEFHRTPPQEEIVCRLK
                     QMEDCGADICKIAVMPQSAEDVLTLLSATLEAKRLAAKPVVTMSMGQTGAVSRLAGQV
                     FGSSITFGSGTQNSAPGQIGVSALRATLDCLENGAD"
     gene            2514..4529
                     /gene="rep"
                     /locus_tag="ACFM6C_001761"
     CDS             2514..4529
                     /gene="rep"
                     /locus_tag="ACFM6C_001761"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006268 - DNA unwinding involved in DNA
                     replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HFC6159183.1"
                     /translation="MMKLNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNV
                     GYLPHTVAAITFTNKAAAEMQERVAKMLPKSQTRGLTICTFHSLGMKILREDANHIGY
                     KKNFSILDSTDSAKIIGELLGGTGKEAVFKAQHQISLWKNDLKTPEDVVQTASNAWEQ
                     QTARVYASYQETLQSYQAVDFDDLIRLPAVLLQQNSEVRNKWQRRLRYLLVDECQDTN
                     TCQFTLMKLLTGAEGMFTAVGDDDQSIYAWRGANMENLRKMQENYPQMKVIKLEQNYR
                     STARILKIANKVIENNPKLFTKKLWSQLGEGEPVKVVACQNEQHEADWVVSQIVKQKL
                     IGGDKTQYADFAVLYRGKHQARIFEEALRGARIPYRLSGGQSFFDKAEIKDVLSYVRL
                     LANPNDDPAFLRAVTTPKRGIGDVTLGKLNTYAHEHECSLYEAAQNEEALATLNNTNR
                     QHLQAFMDMFGSYRTKAETSEAGELINNLLKEIDYENHLLASEEGKAGEIKWRNVGDL
                     VSWFARKGGEDGKNIIELAQTVALMTLLEGKDEEETDAVSLSTLHAAKGLEYPYVFLV
                     GCEEGVLPHNDSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEPSRF
                     IDEMPQEDLKILGRKGGEPIVSKEEGRRNLADIIGRLDSMKKGNPSD"
BASE COUNT         1111 a         1229 c         1235 g          984 t
ORIGIN      
        1 cgcgaacgcg ggaatccagt aaccgaaaaa ccacgggaat ctatcggaaa aaacagaaac
       61 cctcgaccgt cattcccgcg aacgcgggaa tctagaacgt agaatctgag aaaccgtttt
      121 actcgataaa tttccatgcc aacaggtctg gattcccgcc ttcgcgggaa tgacggcata
      181 ttttttgcat ttgatataaa gggtcgtttg aattttgttc agcaagtgca aagtgttgca
      241 cataaaaggg cgtaggcttc atccgtaaag tcggcgcagg atagaggcaa agcgggcgta
      301 ggtcgggctg tagcaactgt atttttcacc ccgtcgggca aaaataccaa aactcaaatc
      361 aagccgttcg gaggcagctc aaaaaacggt acttcgcaac agaagtaccg tttatcggga
      421 ttttaagttt tattcttctg ggcgttcgcc gtcggtttcg tccaattttc cttcggtgat
      481 gtgcatttct acgccgttga gggcgcgaat ttttgcgtcg atttcgtcgg caatttcggg
      541 attttccttc agccagacgc ggacgttgtc tttgccctga ccgattttcg cgccgttgta
      601 gctgtaccac gcgccggatt tgttgatgat gtcgtttttc acgccgatgt cgatcaattc
      661 gccctcccaa ctgatgcctt ctccgtagag gatgtcaaac tctgcctgac ggaacggggg
      721 ggcgactttg tttttgatga ctttgacgcg ggtttcgttg cccaatactt cttcgccttt
      781 tttgatggat ccggtgcggc ggatgtcgag gcggacggaa gaatagaatt tcagcgcgtt
      841 gccgccggtg gtggtttcgg ggctgccgaa cattacgccg atcttcatcc ggatttggtt
      901 gatgaacaca accagcgtgt tggttttttt gatgtgtccg gtcagtttgc gcaaagcctg
      961 actcatcagg cgcgcctgca gtccgacgtg gctgtcgccc atatcgcctt cgatttcggc
     1021 tttggggacg agtgcggcga cggaatcaac gactaccata tctatgccgc ccgaacggac
     1081 aagtgtgtcg cagatttcca aagcctgttc gccggtatcg ggctgggaca ggtaaagctc
     1141 ttcgactttt acgccgagtt tgcgggcgta aacgggatca aaggcgtgtt cggcatcgac
     1201 aaaggcgcac acgccgccgt ttttctggca ttgggcgacg gcttcgaggc agagggtggt
     1261 tttgccggag gattcgggac cgaagatttc gacgatgcgc ccgcgcggca gaccgccgac
     1321 tccgagggca aggtctaatc cgagcgatcc ggtggaaatg acttcgaggt tttcttcctg
     1381 ctggctgccg tccattttca tgatggcgcc tttgccgaaa cttttttcga tttgcgccag
     1441 tgcggcggca agggctttgc ttttgtcgtc tgacatgggg gttactccgg aacaaatgcg
     1501 gtatgtggga tgcggcgcaa cacgggctgc ggcgcgggat gtgtatcgtt ttcccgatgt
     1561 gcgggctatc ggtaatgctg cttcacgggg ttgccattat cgcatatttc cttgcttgcc
     1621 gatatgcggc aggacgcggc ggcttgtgcc ggaatggaat ctggatgccg tctaaaaggc
     1681 ggccggcttt gttataatgg cggctgtttt ttctgtgtgt gcctgtttta tgtgttcctg
     1741 ccttgttgtc aaaaataccg ttatcggaag cggacgcacc aaaatcgccg tgccgcttgt
     1801 cgcccgcgat gctgccgaac tttccgccgt acttgagcaa atcaaaaata tgcccttcga
     1861 tattgcggag ttccgcgccg actttttgga atgcgcgggc agcatcggcg aagtattgcg
     1921 ccacacgcag accgtccgcg acgcgctgcc cgacaaaccg ctgctgttta cgttcagacg
     1981 gcatggcgaa ggcggctcgt tcccgtgttc ggacgattat tattttgaac tgctcgacgc
     2041 gctgatcgaa agccgcctgc ccgacatcat cgacatcgag ctgttttccg gcgaaaccgc
     2101 cgtccggcgc gccgtggcgg atgctcaaaa aaacggcatc gctgccctgc tctgcaatca
     2161 tgagtttcac cgcacgccgc cgcaagaaga aatcgtatgc cgtctgaaac agatggagga
     2221 ctgcggcgcg gacatctgca aaattgcggt gatgccgcaa agcgcggaag acgtgctgac
     2281 tttactttcc gccacgctcg aagcgaaacg gcttgccgcc aaaccggttg ttacgatgtc
     2341 gatggggcag acgggggcgg tcagccgcct tgccggacag gtgttcggct caagcatcac
     2401 gttcggttcg ggaacgcaaa actccgcgcc ggggcaaatc ggcgtatccg ccctccgtgc
     2461 gacactcgac tgcctcgaaa acggagcaga ctgatttcag acagcatcaa aacatgatga
     2521 aactcaatcc ccaacaactc gaagccgtcc gctacctcgg cggcccactg ctcgtccttg
     2581 ccggtgcagg cagcggcaaa accggcgtga ttactcaaaa aattaagcat ttgattgtca
     2641 atgtcggcta tctgccgcat accgtcgccg cgattacctt taccaacaaa gccgctgcgg
     2701 aaatgcagga gcgcgtcgcc aaaatgctgc ccaaatcgca aacgcgcggg ctgacaattt
     2761 gcacgttcca ttctttgggc atgaagattt tgcgcgaaga tgcgaaccat atcggttaca
     2821 aaaaaaactt ctccattctc gattctaccg acagcgcgaa aatcatcggc gaactcttag
     2881 gcggtacggg caaagaagcc gtattcaagg cgcagcacca gatttccttg tggaaaaacg
     2941 atttaaaaac gcctgaagat gtcgttcaga cggcctctaa tgcgtgggaa caacaaaccg
     3001 cacgcgtgta tgcgagctat caggaaacct tacaaagcta tcaggcagtg gacttcgatg
     3061 acttaatccg cctgcctgcc gtgctgttgc agcaaaacag cgaagtgcgc aacaaatggc
     3121 agcggcggct gcgttatctg ctggttgacg aatgccaaga tacgaatacc tgccaattta
     3181 cgttgatgaa acttctgacc ggcgcggaag gtatgtttac cgccgtcggc gacgacgacc
     3241 agtctatcta cgcatggcgc ggtgcgaaca tggaaaacct gcgcaaaatg caggaaaact
     3301 atccacagat gaaggtcatc aaactggagc aaaactaccg ctccaccgcg cggattctca
     3361 aaatcgccaa caaagtcatc gaaaacaacc ccaagctgtt taccaaaaaa ctttggtcgc
     3421 aattgggcga aggcgagccc gtcaaagtcg ttgcctgcca aaacgagcag cacgaagccg
     3481 actgggtcgt cagccaaatc gtcaaacaaa aactcatcgg cggcgacaaa acccaatatg
     3541 ccgatttcgc cgtgttatac cgcggcaagc atcaggcgag gattttcgag gaagcattgc
     3601 gcggcgcgcg catcccctac cggctctccg gcggacaaag ctttttcgac aaagccgaaa
     3661 tcaaagacgt gttgtcttat gtgcggctgc ttgccaaccc caacgacgat cccgcctttc
     3721 tgcgtgccgt taccacgccc aaacgcggca tcggcgatgt aacgctgggc aagctcaaca
     3781 cttacgcgca cgaacacgaa tgcagcctgt atgaagccgc gcaaaacgaa gaagcccttg
     3841 ccacgctgaa caataccaac cgccaacacc tgcaagcctt tatggatatg ttcggcagct
     3901 accgcaccaa agccgaaacc agcgaagcgg gcgaactcat caacaacctg ctcaaagaaa
     3961 tcgattacga aaaccacctg cttgccagtg aagaaggcaa agccggcgaa atcaaatggc
     4021 gcaacgtcgg cgatttggta tcatggtttg cgcgaaaagg cggggaagac ggcaaaaaca
     4081 tcatcgaact cgcccaaacc gtcgccttga tgacgctttt ggaaggaaaa gacgaagaag
     4141 aaaccgatgc cgtctcgcta tccacgctac acgccgccaa aggtttggag tatccgtatg
     4201 ttttccttgt cggttgcgaa gaaggtgttt tgccgcacaa cgacagcatc gaagagggca
     4261 acgtcgaaga agaacgccgc ctgatgtacg tcggcatcac ccgcgccaaa cgccaactca
     4321 cgctgaccca ctgcgtcaaa cgcaaaaaac aaggcacatg gcagttcccc gaacccagcc
     4381 gattcataga cgaaatgccg caggaagatt taaaaatatt ggggcgcaaa ggcggcgagc
     4441 cgattgtcag caaggaagaa ggcagacgca accttgccga tataatcgga aggctcgaca
     4501 gcatgaaaaa aggcaatccg tcggattaaa ccaagatagg gaaacgaagc cggagacaa
//
LOCUS       DAXHPV010000153         4537 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.153, whole genome shotgun sequence.
ACCESSION   DAXHPV010000153 DAXHPV010000000
VERSION     DAXHPV010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4537
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.153"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(206..2338)
                     /locus_tag="ACFM6C_001762"
     CDS             complement(206..2338)
                     /locus_tag="ACFM6C_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0030256 - type I protein secretion system
                     complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0030253 - protein secretion by the type I
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I secretion system permease/ATPase"
                     /protein_id="HFC6159184.1"
                     /translation="MTAVPTPLPALSALIILAHYHGIAANPADIQHEFCTSAQSDLNE
                     TQWLLAAKSLGLKAKVVRQPIKRLAMATLPALVWCDDGNHFILAKTDGEGEHAQFLIQ
                     DLVTNKSAVLSFAEFSNRYSGKLILVASRASVLGSLAKFDFTWFIPAVIKYRRLFFEV
                     LVVSVVLQLFALITPLFFQVVMDKVLVHRGFSTLDVVSVALLVVSLFEIVLGGLRTYL
                     FAHTTSRIDVELGARLFRHLLSLPLSYFEHRRVGDTVARVRELEQIRNFLTGQALTSV
                     LDLAFSFIFLAVMWYYSSTLTWVVLASLPAYAFWSAFISPILRTRLNDKFARNADNQS
                     FLVESITAVGTVKAMAVEPQMTQRWDNQLAAYVASGFRVTKLAVVGQQGVQLIQKLVT
                     VATLWIGARLVIEGKLTVGQLIAFNMLSGQVAAPVIRLAQLWQDFQQVGISVARLGDI
                     LNAPTENASSHLALPDIRGEITFEHVDFRYKADGRLILQDLNLRIRAGEVLGIVGRSG
                     SGKSTLTKLVQRLYVPEQGRVLVDGNDLALAAPAWLRRQVGVVLQENVLLNRSIRDNI
                     ALTDTGMPLERIIEAAKLAGAHEFIMELPEGYGTVVGEQGAGLSGGQRQRIAIARALI
                     TNPRILIFDEATSALDYESERAIMQNMQAICANRTVLIIAHRLSTVKTAHRIIAMDKG
                     RIVEAGTQQELLAKPNGYYRYLYDLQNG"
     gene            2927..3736
                     /locus_tag="ACFM6C_001763"
     CDS             2927..3736
                     /locus_tag="ACFM6C_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RTX iron-regulated FrpC family protein"
                     /protein_id="HFC6159185.1"
                     /translation="MRPYATTIYQLFILFIGSVFTMTSCEPVNEKTDQKAVSAQQAKE
                     QTSFNNPEPMTGFEHTVTFDFQGTKMVIPYGYLARYTQDNATKWLSDTPGQDAYSINL
                     IEISVYYKKTDQGWVLEPYNQQNKAHFIQFLRDGLDSVDDIVIRKDACSLSTTMGERL
                     LTYGVKKMPSAYPEYEAYEDKRHIPENPYFHKLYYIKKGENPAIITHQNYHRYGENDY
                     STSVGSCINGFTVRYYPFIREKQQLTQQELVGYHQQVEQLVQSFVNNPSKK"
     gene            3753..>4537
                     /locus_tag="ACFM6C_001764"
     CDS             3753..>4537
                     /locus_tag="ACFM6C_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159186.1"
                     /translation="MNEGEVVLTPEQIQTLYGYAFRGDTYGGWRYLANLGDRYADDAA
                     AIVGKDTNLNGLNLWMKKGVENLWDDTVGKKTRLEKFDRVALQHFSQYVDLINENNGR
                     LPNTSEIERSYYKAVTENGVSSSAAIDLVINRSLPDMADGYWALGLGIEAERIHNEQA
                     VNNPNGSEWDNRKQLISALDKGFDGSFKEKPFTFLQSVIMDVTKLSVEYTIDGWQKIG
                     GWGNGIINDLYKSVAKREWTGIFEIVNNNIKQFRDLFPNPEGW"
BASE COUNT         1371 a         1052 c          993 g         1121 t
ORIGIN      
        1 cttggtggga atttagggga ttttggggga ttttgcaaag gtctctagat gagtgaaaaa
       61 gaagtgcagg ctgcctaaaa agacagaaaa agtctttccg gcagcctgca ctttggtttc
      121 atttcagtca gtaaacccag taaacgacgg tctgaaaacg cagaacgtta cgaaaaaagc
      181 agcctacacg cccatccccc gccttctacc cgttctgtaa atcatacaga tagcggtaat
      241 atccgttcgg cttcgccagc aattcctgct gtgttcccgc ttccacaatc ctgcctttat
      301 ccatggcaat gattcggtgt gccgttttaa cggtggacag acggtgggcg ataatcagca
      361 ccgtccggtt ggcgcaaatg gcctgcatgt tctgcataat cgctcgttca ctttcataat
      421 ccagcgcgct ggtggcttca tcaaaaatca gaatgcgcgg attggtgatt aacgcgcggg
      481 caatcgcaat acgctgccgc tgtccgcccg acaagccggc cccttgttcg cccaccacgg
      541 tgccgtagcc ttccggcagc tccataataa actcgtgtgc gcccgccagt ttggctgctt
      601 cgataatgcg ttccagcggc atacccgtat ccgtcagcgc gatattgtcg cgtatgctgc
      661 ggttgagcag cacattctcc tgcaagacca cgccgacctg ccgccgcagc caggcaggag
      721 cggccaaagc caaatcgttg ccgtccacca acacccgtcc ctgctccggt acatacagac
      781 gctgcaccaa tttggtgagt gtggatttgc ccgaccccga acgtcccaca atccccagca
      841 cttcccccgc ccgaatccgc aggttcaaat cctgcaaaat cagcctgccg tccgccttat
      901 agcggaaatc gacatgttcg aacgtaatct ccccccggat atcgggcaaa gccaaatgcg
      961 aagacgcatt ctcggtcggc gcattcagaa tatcccccaa acgcgccacc gaaatcccca
     1021 cctgctggaa atcctgccac aactgcgcca aacggataac aggcgccgcc acctgtcccg
     1081 agagcatatt aaacgcaatc agctgcccca ccgtcagctt gccctcaatt accagccgtg
     1141 cgccaatcca caacgtcgcc accgtcacca gcttctgaat cagctgcacc ccctgctggc
     1201 cgaccaccgc caacttcgtt acccgaaatc ccgaagccac ataagccgcc aactgattgt
     1261 cccaacgctg cgtcatctgc ggctccaccg ccatcgcctt taccgtaccc accgcagtga
     1321 tgctttctac taaaaacgac tggttgtctg cattgcgcgc gaacttatcg ttcagacgcg
     1381 tccgcagtat cggactgata aatgccgacc aaaacgcata ggcaggcaac gaagccaata
     1441 ccacccaagt cagagtggag ctgtaatacc acatcaccgc cagaaagata aacgaaaacg
     1501 ccaaatccaa caccgaagtc agcgcctgac cggtcaagaa attgcgaatc tgctccaatt
     1561 cccgcacccg agccaccgta tcacccactc gtctgtgctc gaaataggat aaaggcaggg
     1621 aaagcagatg ccggaacaaa cgcgcgccca attccacatc aatacgtgaa gtcgtatgtg
     1681 caaacagata cgtccgcaaa ccgcccaaca caatctcaaa cagcgacacc accaacaaag
     1741 ccaccgacac cacatccaaa gtagagaatc cccgatgtac cagcaccttg tccatcacca
     1801 cttggaaaaa cagaggcgta atcagcgcaa acagctgcaa caccaccgac accaccaata
     1861 cttcaaaaaa caaccggcgg tatttgatta ccgccggaat aaaccaggta aagtcaaact
     1921 ttgccaaact gcccaatacc gaagcgcggg aagcaaccaa tatcagtttg cccgaatatc
     1981 tgttagaaaa ttcggcaaaa gacaataccg cagacttatt cgtaaccaaa tcctgtatca
     2041 aaaattgggc atgctcaccc tcaccgtctg ttttggccaa aatgaaatgg ttgccgtcat
     2101 cacaccatac caatgcgggt aaagtcgcca tagccaaacg tttaataggc tggcggacta
     2161 cctttgcctt caatcccaaa gatttggcgg ctaacagcca ttgcgtttca tttaaatcgc
     2221 tctgtgcgga agtacaaaat tcatgctgta tatcggcagg attggcggca atgccgtggt
     2281 aatgggcgag gatgatgagg gcggaaaggg cggggagagg tgtgggtacg gcggtcatga
     2341 tattgagatt gaataacggg taacaaaaaa tataccaaaa atagcaaaac aaattgtaag
     2401 gatacgtata ggctttgtaa aggtaaattg tgaaaaaagc agttttttaa acgaatgaaa
     2461 cggcttcggg ctgaaatata tgctgatgcc ctgttcttcc cgtatttctc gtgtgttgtc
     2521 aaagtgcagg ctgctttgaa atcggtattg ccatctatga accaccactt tgctttattt
     2581 cagcgggctt gagatgtgta taagaatatt gttttgaata aatttaaaga aaatgataat
     2641 cgttattgac gatttttaaa ggaaagcgta gagtgccaat tctatgaagc aatacggtaa
     2701 gtaacaatga aaatatctac tgcttgggta tagagcatat ttcacaaccc gtaactattc
     2761 ttgcggaaac agagaaaaaa gtttctcttc tatcttggat aaatatattt accctcagtt
     2821 tagttaagta ttggaattta tacctaagta gtaaaagtta gtaaattatt tttaactaaa
     2881 gagttagtat ctaccataat atattcttta actaaggctt gaaattatga gaccatatgc
     2941 tactactatt tatcaacttt ttattttgtt tattgggagt gtttttacta tgacctcatg
     3001 tgaacctgtg aatgaaaaga cagatcaaaa agcagtaagt gcgcaacagg ctaaagaaca
     3061 aaccagtttc aacaatcccg agccaatgac aggatttgaa catacggtta catttgattt
     3121 tcagggcacc aaaatggtta tcccctatgg ctatcttgca cggtatacgc aagacaatgc
     3181 tacaaaatgg ctttctgaca cgcccgggca ggatgcttac tccattaatt tgatagagat
     3241 tagcgtctat tacaaaaaaa ccgaccaagg ctgggttctt gagccataca accagcagaa
     3301 caaagcgcac tttatccaat ttctacgcga tggtttggat agcgtggacg atattgttat
     3361 ccgaaaagat gcgtgtagtt taagtacgac tatgggagaa agattgctta cttacggggt
     3421 taaaaaaatg ccatctgcct atcctgaata tgaagcttat gaagataaaa gacatattcc
     3481 tgaaaatcca tattttcata aactttacta tattaaaaaa ggagaaaatc cggcgattat
     3541 tactcatcag aactatcata ggtatggaga gaacgattac agcactagcg taggttcctg
     3601 tattaacggt ttcacggtac ggtattaccc gtttattcgg gaaaagcagc agctcacaca
     3661 gcaggagttg gtaggttatc accaacaagt agagcaattg gtacagagtt ttgtaaacaa
     3721 tccaagtaaa aaataattta aaggatctta ttatgaatga gggtgaagtt gttttaacac
     3781 cagaacaaat ccaaaccttg tatggttatg ctttccgtgg cgatacctat ggcggttggc
     3841 gttatttggc taatttgggt gaccgttatg cggatgatgc tgccgcaatt gtcggtaagg
     3901 atacaaactt aaatggtttg aatttatgga tgaaaaaagg tgtggaaaac ctatgggatg
     3961 atacggtcgg taaaaagacc cgtttagaga aatttgatcg ggttgcactg caacatttca
     4021 gccaatatgt agatctaatt aatgaaaata atggtagatt acctaacact agtgaaattg
     4081 agagaagtta ctataaagcc gttaccgaaa atggtgtttc ttctagtgca gctattgatt
     4141 tagttattaa tcgttcactt ccggatatgg cggatggtta ttgggcatta ggtttgggga
     4201 tagaagccga acgtatccac aatgagcaag cagtaaataa tccgaacggt agcgaatggg
     4261 ataatagaaa gcagttaata tctgctttag ataaaggatt tgatggatct tttaaagaga
     4321 agccttttac ttttttacaa tctgtgataa tggatgtaac aaagttaagt gttgaatata
     4381 caatagatgg ttggcaaaaa attggaggtt ggggtaatgg gataatcaat gatttatata
     4441 aaagtgttgc aaaaagagag tggactggaa tatttgagat cgttaataat aacatcaagc
     4501 aatttagaga tctgttccca aatccggaag gctggat
//
LOCUS       DAXHPV010000154         4476 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.154, whole genome shotgun sequence.
ACCESSION   DAXHPV010000154 DAXHPV010000000
VERSION     DAXHPV010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4476
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.154"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            416..491
                     /locus_tag="ACFM6C_001765"
     tRNA            416..491
                     /locus_tag="ACFM6C_001765"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:450..452,aa:Glu,seq:ttc)
     gene            1258..2064
                     /gene="thiD"
                     /locus_tag="ACFM6C_001766"
     CDS             1258..2064
                     /gene="thiD"
                     /locus_tag="ACFM6C_001766"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008902 - hydroxymethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0008972 - phosphomethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HFC6159187.1"
                     /translation="MKSSFVQTLTIAGSDSGGGAGIQADLKTFQMRGVFGTCVITAVT
                     AQNTLGVSAVHLVPTETITAQIQAIREDFDIRAYKIGMLGTAEIIECVADKLKHCDFG
                     RRVLDPVMIAKGGAPLLQDSAVAALTRLLLPDTDVLTPNLPEAEALTGVHIENRKDAE
                     RAAKILLDYGVKNVVIKGGHLNGSTSGRCTDWLFTQNETLELDSPRFPTAHTHGTGCT
                     FSACITAELAKGSDVCKAVRTAKSYITAAISNPLEIGAGHGPVNHWAYRD"
     gene            complement(2114..2983)
                     /gene="tehB"
                     /locus_tag="ACFM6C_001767"
     CDS             complement(2114..2983)
                     /gene="tehB"
                     /locus_tag="ACFM6C_001767"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0046690 - response to tellurium ion
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase TehB"
                     /protein_id="HFC6159188.1"
                     /translation="MKERIVGQSGELFCFGQMPVWKAENLPEILLSGYSSEGGEWVCL
                     NVLQGDVEVRTQDGAAEVWSAESGDCVFAPQQVFSVKLKTDDAEIRLSLYCAAADYFH
                     KKYGMSATHSAVAAARDTVPAGRALDMGCGQGRNALFLGLKGFEVTAVDHNPAALANV
                     AELAEAEGLNVRTLEYDLNAAALQGEFDYIVATVVLMFLMPQRVPDVIADMQAHTAAG
                     GYNLIVSAMDTADFPCPMPFPFKFKEGELKDYYRDWELVEYKEELGAMHAKDENGNPI
                     RFKFVTMLAKKPE"
     gene            3097..3534
                     /gene="rnhA"
                     /locus_tag="ACFM6C_001768"
     CDS             3097..3534
                     /gene="rnhA"
                     /locus_tag="ACFM6C_001768"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HFC6159189.1"
                     /translation="MDQTVYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTN
                     NRMELTAVIEGLKSLKRRCTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDD
                     LWKELDVLVGQHQVSWTWVKGHAGHAENERADDLANRGAAQFS"
BASE COUNT         1131 a         1279 c         1086 g          980 t
ORIGIN      
        1 cgtctgaaaa tttaaaagtt ctagattccc gctttcgcgg gaatgacgaa gtttcagacg
       61 gcatcgcccg cctgttttga tatggcggca cccccccccg acaaaaaaaa caatccggaa
      121 cgcatctgac cgttccggct tattttcagg cgaatccgcc gcatcagaac atactgcgca
      181 cgcccatatt gacctgccaa gtctggcgca tcgtgtgcat cgaagacctt tgcgcctcaa
      241 aataaagctg ccttccgttg tcggcattac cacgcaaaaa aatgaattgc ttgatattcc
      301 aatgttttta tatgttttta tatggtgatg cgatcagaca aacgcccccc tgacatttgt
      361 ttagacggca tcgtattgct aaatttctat aagtatgtat aatgtccgtt tccacgcgcc
      421 catcgtctag aggcctagga cactgccctt tcacggcggc aaccggggtt cgaatccccg
      481 tgggcgtgcc aattcaaaaa cctgcttgtt tcaagcaggt ttttttatta tgaatcgtca
      541 ttcccgcacc cttcgtcatt cccgcgaaag cgggaatctg gagcgtaggg ttgaagaaac
      601 cgttttatcc gataagtttc cgtgccgaca ggtctggatt cccactttcg tgggaatgac
      661 gagtctttta taacctttaa ggctgctctg cccaatggtt tggattcccg cttatgcggg
      721 aatgacgggg cggggcgatg ccgtctgaaa cttcgtcatt cccacaaccc ttcgtcattc
      781 ccatgaaaac gggaatctag aacttctgaa ttttcagacg gctttataaa tattgccgct
      841 gccccaaggg ctagattccc gcctgcgcgg gaatgatgat ttggaaatca cccgaaaccc
      901 aaaaacaact gaaaccgaac acactggatt cccgctttcg taggaatgac ggaattttag
      961 gtttctgttt ttgtgggaat gacgaataaa gcgtgccggt ttatgctcac cgcaacacgc
     1021 ggttcagacg gcattgctct cttttttcat tatcagtggg tgtagcaact gtatttttca
     1081 ccccgtcggg caaaaataca gttgctacga tgcaccccgc cgccctgccc tgtgccttgt
     1141 cctgcaatac ggcatataat gcaccacaaa ccccgcgctg cggttttcag acggcatcgc
     1201 cgtgcttttt tacaggcatt agcccttttt atcggacaca atattaagga ggaataaatg
     1261 aaaagctctt ttgtgcaaac gcttaccatc gccggttcgg attcgggcgg cggtgcgggc
     1321 attcaggcgg atttgaaaac gtttcagatg cgcggcgtgt tcggaacgtg cgtcatcacc
     1381 gccgttaccg cgcaaaatac cttgggcgtg tcggcggttc atctcgtccc gaccgaaacc
     1441 atcaccgcac aaatccaagc aatcagggaa gactttgaca tccgcgccta caaaatagga
     1501 atgctcggca cggcggaaat catcgaatgc gttgccgaca agctgaaaca ctgcgacttc
     1561 ggcaggcgcg tactcgaccc tgtgatgatt gccaaaggcg gtgcgccgct gttgcaggat
     1621 tccgccgttg cggcactgac gcgcctgctg cttcccgata cggatgtatt gacccccaac
     1681 ctgcccgagg cggaagccct gaccggcgtg catatcgaaa accgtaaaga tgcggaacgt
     1741 gcggcaaaaa tcctgcttga ttacggtgtc aaaaatgtcg ttatcaaagg cggacatttg
     1801 aacggcagca caagcggacg ctgcacggat tggctgttta cgcaaaatga aacgctggaa
     1861 ttggacagcc cgcgctttcc aaccgcccac acgcacggca cgggctgcac gttttccgcc
     1921 tgcatcaccg ccgagttggc aaaaggctcg gacgtttgca aagccgtacg gactgccaag
     1981 tcctacatta cggcggcaat ctcaaaccct ttggaaatcg gcgcgggaca cggcccggtc
     2041 aatcattggg cgtatcggga ctagacgtaa aaatgccgtc tgaaacaaaa tgttcagacg
     2101 gcatttttga ggattattca ggctttttcg ccagcatggt tacaaattta aaccgtatcg
     2161 gattgccgtt ttcgtctttg gcgtgcatcg cgcccaattc ttctttatat tcgaccagct
     2221 cccaatcccg ataataatcc ttcagctctc cctctttaaa tttaaaaggg aacggcatcg
     2281 gacaagggaa atccgccgta tccattgccg acacaatcaa attgtacccg cccgccgccg
     2341 tatgcgcctg catatcggca atcacgtcgg gcacgcgctg cggcatcagg aacatcagca
     2401 ccactgttgc cacaatataa tcaaactcac cctgcaaggc ggcggcattc aagtcatatt
     2461 ccagcgtgcg gacgttcaag ccctccgcct ctgccagctc cgccacgttt gccaaggcgg
     2521 ccggattgtg atcgactgca gtaacttcaa atcccttcaa accgagaaac agtgcgttgc
     2581 gcccctgtcc gcagcccata tccaacgccc tgcccgccgg tacggtatcc cgtgccgccg
     2641 cgaccgcaga atgcgtggca ctcatcccgt attttttgtg aaaatagtct gccgccgcgc
     2701 aatacagcga caaacggatt tcggcatcgt ccgttttcag tttgaccgaa aacacctgct
     2761 gcggcgcaaa cacgcaatcg ccgctttccg ccgaccaaac ctctgccgcc ccgtcctgcg
     2821 tgcggacttc gacatcgccc tgcaacacat tcaggcagac ccattcccct ccttcggacg
     2881 aataacccga caacaaaatt tccggcaggt tttccgcctt ccatacgggc atttgtccga
     2941 aacaaaacaa ctcgccgctt tgacccacta tccgctcctt catattcaaa aataaagttg
     3001 cacattatat gcctatttta atccgccgca atctttcaga cggcacggcg cacaaaccgc
     3061 ttataatcac gccggacacc acacaaaggc acaataatgg accaaaccgt ttacctttac
     3121 accgacggcg cgtgcaaagg caatcccggc gcgggcggct ggggcgtgtt gatgcgctac
     3181 ggcagccacg aaaaagaact tttcggcggc gaagcgcaaa ccaccaacaa ccgcatggag
     3241 ctgaccgccg tcatcgaagg actgaaatcg ctcaaacgcc gctgcaccgt catcatctgc
     3301 accgactcgc aatacgtcaa aaacggcatg gaaaactgga tacacggttg gaagcgcaac
     3361 ggctggaaaa ccgccgccaa acagcccgtc aaaaacgacg acttgtggaa agaactcgac
     3421 gttctggttg ggcagcacca agtcagctgg acttgggtta aaggacacgc gggacacgcg
     3481 gaaaacgaac gcgccgacga tttggcaaac cgtggcgcag cgcagttttc ctgactgccg
     3541 ctccggcaaa aatgccgtct gaaaccgcta atgggcttta gacggcatcg tcctccaccg
     3601 tcattcccgc gcaggcggga atccaaaccg tcgggcaacg gcaatattca aaagccgtct
     3661 gaaaatttag aggctctaga ttcccgcttt tgcgggaatg acgaaaagtt gcggacagca
     3721 gaggaatgac gaggtttcag acggcattgg gggctttgtc gggcttcagg cggcatccga
     3781 ccgccccgtc attcccgcga aagcgggaat ctaaaaaccc aacgctgcaa aaatttattt
     3841 agaaacaact gaaaccgctc caccgtcatt cccgcgcagg cgggaatcta gaccgtcggg
     3901 caacggcaat attcaaagat tatctgaaag tttgaagttc tagattcccg ttttcacggg
     3961 aatgacgaaa agttgcaaga atgacggagt ttcaggcggc atccgaccgc cccgtcattc
     4021 ccgcgaaagc gggaatctaa aaacccaacg ctgcaagatt tatcagaaac aactgaaacc
     4081 gaacggactg gattcccgcc tgcgcgggaa tgacgggatt ttagtaaccg tagcaaccgc
     4141 ctgcgcgacg gctaaggggc ttcagcaacc gtagcaactg cctgtgtggg aatgacggac
     4201 aatgggcttc agacggcatc agacggcatc tcttgcctgc cgctaaaaca gtttgccgca
     4261 caactgttca aacgcgtccg atatatttca acacacagga cgacacataa agcacctccc
     4321 tatgtgtcgt cctgatttgg aaggggttac accccctccc aaataaagtc tgatcctgcc
     4381 gccccgaagg acagatgtcc gagtggcggg gtttcaaccg aaaaggaaat acgatgaagt
     4441 ggtacaatta gcggcaatgc ggacagacaa attaaa
//
LOCUS       DAXHPV010000155         4421 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.155, whole genome shotgun sequence.
ACCESSION   DAXHPV010000155 DAXHPV010000000
VERSION     DAXHPV010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4421)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4421)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4421
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.155"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            38..461
                     /locus_tag="ACFM6C_001769"
                     /pseudo
     CDS             38..461
                     /locus_tag="ACFM6C_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221878.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            567..1130
                     /gene="pgsA"
                     /locus_tag="ACFM6C_001770"
     CDS             567..1130
                     /gene="pgsA"
                     /locus_tag="ACFM6C_001770"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008444 -
                     CDP-diacylglycerol-glycerol-3-phosphate
                     3-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HFC6159190.1"
                     /translation="MPWNLPIFLTWLRVLLIPVLTALFYLPFPWFAEETINLTAAVIF
                     AVAALTDWFDGFLARLWKQTSDFGAFLDPVADKLMVAVSLLLLVKLDRTYVLFAMIII
                     GREITISALREWMAQMGKRNSVAVATVGKFKTAAQMLAIFLLLLNIPDFYGFNLVVIG
                     NILMFIASLLTVWSMLYYLKMAWKEIA"
     gene            1210..1285
                     /locus_tag="ACFM6C_001771"
     tRNA            1210..1285
                     /locus_tag="ACFM6C_001771"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1243..1245,aa:Gly,seq:gcc)
     gene            1311..1386
                     /locus_tag="ACFM6C_001772"
     tRNA            1311..1386
                     /locus_tag="ACFM6C_001772"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1344..1346,aa:Gly,seq:gcc)
     gene            1410..1485
                     /locus_tag="ACFM6C_001773"
     tRNA            1410..1485
                     /locus_tag="ACFM6C_001773"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1443..1445,aa:Gly,seq:gcc)
     gene            1507..1582
                     /locus_tag="ACFM6C_001774"
     tRNA            1507..1582
                     /locus_tag="ACFM6C_001774"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1540..1542,aa:Gly,seq:gcc)
     gene            1608..1681
                     /locus_tag="ACFM6C_001775"
     tRNA            1608..1681
                     /locus_tag="ACFM6C_001775"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1640..1642,aa:Cys,seq:gca)
     gene            1784..1873
                     /locus_tag="ACFM6C_001776"
     tRNA            1784..1873
                     /locus_tag="ACFM6C_001776"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1818..1820,aa:Leu,seq:taa)
     gene            1977..3029
                     /gene="sohB"
                     /locus_tag="ACFM6C_001777"
     CDS             1977..3029
                     /gene="sohB"
                     /locus_tag="ACFM6C_001777"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HFC6159191.1"
                     /translation="MWKEILLNYGIFLLELLTVFGAIALIVLAIVQSKKQSESGSVVL
                     TDFSENYKKQRQSFEAFFLSGEEAKHQEKEEKKKEKAEAKAEKKRLKEGGEKSAETQK
                     SRLFVLDFDGDLYAHAVESLRHEITAVLLIAKPEDEVLLRLESPGGVVHGYGLAASQL
                     RRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFAIVGSVGVVAEVPNIHRLLKK
                     HDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQLFKQFVSENRPQLDIEEV
                     ATGEHWFGRQALALNLIDEISTSDDLLLKAFENKQVIEVKYQEKQSLIQRIGLQAEAS
                     VEKLFAKLVNRRADVM"
     gene            complement(3080..3949)
                     /locus_tag="ACFM6C_001778"
     CDS             complement(3080..3949)
                     /locus_tag="ACFM6C_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter six-transmembrane
                     domain-containing protein"
                     /protein_id="HFC6159192.1"
                     /translation="MWKMLKHIAQTHRKRLLGTFSLVGLENLWMLVLYPVFGGRAINA
                     VIAGEVWQALLYALVVLLMWLVGAARRIADTRTFTRIYTEIAVPVVLEQRQRQVPHSA
                     VTARVALSREFVSFFEEHLPIAATSVVSIFGACIMLLVLEFWVGVSAVGILALFLWLL
                     PRFAAISENLYFRLKNSLERDNHFIRKGDRRQLYRHYGLLARLRVLISNREAFGYLCV
                     GTAMGILFGFAFVMMTLKGYSSAGHVYSVGTYLWMFAMSLDDVPRLVEQYSNLKDIGQ
                     RIGGLERNIKAGT"
     gene            complement(3959..4390)
                     /locus_tag="ACFM6C_001779"
     CDS             complement(3959..4390)
                     /locus_tag="ACFM6C_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HFC6159193.1"
                     /translation="MNQLDQLGTRINLICNVFDKWIGQQDLNYNLFAVLYTLATEGSR
                     TQKHIGEEWSLPKQTVSGVCKTLAGQGLIEWQESEQDRRERLLSLTEKGKAHAAPLTE
                     SAQEFSDKVFATFGDKRTTRLFADLDALAEVMEKTISENKK"
BASE COUNT         1087 a         1051 c         1164 g         1119 t
ORIGIN      
        1 tcgctgggta tggtttgccg ccataagctg tctgctgttg tccgccgttt ttattgcacc
       61 ttacctgacg gcatttcacg aacaagaaaa aacattagaa tatgcggaat tgaccgttac
      121 cgcccccaac cgcagcggac gggcaatcaa actggatgca gacgggcagc attaccggct
      181 ttcctgctat gggttcgaca gtttgtgcac aggcggcaat atcggcagaa ccatcagggc
      241 ggagcaggtt agagccgttt taagcgaaac agtcggcaaa ggttttttaa acggcgttct
      301 gttggaatac cgcaacagtg gcagtgtcta taagcaataa agattttgcc cgcacggaag
      361 accgccttgt cgaagtgttg gcacaacctg ccgttttcag cctgaaactg ggtattttgc
      421 ttttattgcc cgccattttc ctgcgtttga aaagaatgtg aaaacagatt ggcggggcgg
      481 gggaatgccc atgcagcaat tttacgtttt gggttatgag gataaccgtt ataatcacaa
      541 ctttacagtc tgcacagaga aaaccgatgc cttggaatct ccccatcttc ctcacatggt
      601 tgagggtctt gctcattcct gtcctgacag ccctttttta cctgcctttt ccgtggttcg
      661 cggaggaaac gattaatctc accgccgccg tcatttttgc cgttgccgcc ttgaccgact
      721 ggtttgacgg atttttggca aggttgtgga aacagacctc ggatttcggc gccttcctcg
      781 atcccgttgc cgacaagctg atggtcgccg tctctttgct tttactggtc aaactcgacc
      841 ggacctatgt tttgtttgcc atgatcatca tcggcaggga aattaccatt tccgcattgc
      901 gcgaatggat ggcgcaaatg ggcaaaagga acagcgttgc cgtcgccacc gtcggtaagt
      961 ttaaaaccgc cgcgcaaatg ctggcaattt tcctgctgct gctgaatatt cccgattttt
     1021 acggatttaa tcttgttgtt atcggcaaca tattgatgtt tatcgcatct ttgctgacag
     1081 tctggtcgat gctgtattat ctgaaaatgg cgtggaaaga aatcgcctga aaaaaacata
     1141 aaaatagctt gacggcaaaa acagaatcca taataattgc gtctcttcga tgttggagaa
     1201 tgaaatcggg cgggaatagc tcagttggta gagcgcaacc ttgccaaggt tgaggtcgcg
     1261 agttcgagac tcgtttcccg ctccaaaaat ttcattttcc cacaatcatt gcgggaatag
     1321 ctcagttggt agagcgcaac cttgccaagg ttgaggtcgc gagttcgaga ctcgtttccc
     1381 gctccaagtt ttatttcaaa catatcaacg cgggaatagc tcagttggta gagcgcaacc
     1441 ttgccaaggt tgaggtcgcg agttcgagac tcgttttccg ctccaaaaac cgatatgttt
     1501 gaacgcgcgg gaatagctca gttggtagag cgcaaccttg ccaaggttga ggtcgcgagt
     1561 tcgagactcg tttcccgctc caagtttttt agataagcca gttttagggc gagatagcaa
     1621 agtggttatg cagcggattg caaatccgtc tacgccggtt cgattccgac tctcgcctcc
     1681 attatcgtac tatggcgggg tggcagagtg tttatgctat gaggagtgca atcttcatat
     1741 aggccggtta aaatccgcgc ccccgcctcc acctttcaca aatgcccggg tggtgaaata
     1801 ggtagacaca acggacttaa aatccgtcgg gactaaacat cccgtgccgg ttcgattccg
     1861 gctccgggca ccaagctgaa aatgacaata ccgctccaag cggttatttt tttatctgtc
     1921 ggacggtgat ggacaatatt gacatgttca tgcctgaaca agaggaaatc caatcaatgt
     1981 ggaaagaaat tttactgaat tacggtattt tcctgctcga actgcttacc gtgttcggcg
     2041 caattgcgct gattgtgttg gctatcgtac agagtaagaa acagtcggaa agcggcagtg
     2101 tcgtactgac ggatttttcg gaaaattata aaaaacagcg gcaatcgttt gaggcattct
     2161 ttttaagcgg ggaagaggca aaacatcagg aaaaagagga aaagaaaaag gaaaaggcgg
     2221 aagccaaagc agagaaaaag cgtttgaagg agggtgggga gaaatctgcc gaaacgcaaa
     2281 aatcccgcct ttttgtgttg gattttgacg gcgatttgta tgcacacgcc gtagaatcct
     2341 tgcgtcatga gattacggcg gtgcttttga ttgccaagcc tgaagatgag gttctgctta
     2401 gattggaaag tccgggcggc gtggttcacg gttacggttt ggcggcttca cagcttaggc
     2461 gtttgcgcga acgcaatatt ccgctgaccg tcgccgtcga taaggtggca gcgagcggtg
     2521 gttatatgat ggcgtgtgtg gcggataaaa ttgtttccgc tccgtttgcg attgtcggtt
     2581 cggtgggtgt ggtggcggaa gtaccgaata tccaccgcct gttgaaaaaa catgatattg
     2641 atgtggatgt gatgacggcg ggcgaattta agcgcacggt tacttttatg ggtgaaaata
     2701 cggaaaaggg caaacagaaa ttccgacagg aactggagga aacgcatcag ttgttcaagc
     2761 agtttgtcag cgagaaccgc cctcaattgg atattgagga agtggcaacg ggcgagcatt
     2821 ggttcggtcg gcaggcgttg gcgttgaact tgattgacga gatttcgacc agtgatgatt
     2881 tgttgttgaa agcgtttgaa aacaaacagg ttatcgaagt gaaatatcag gagaagcaaa
     2941 gcctgatcca gcgcattggt ttgcaggcgg aagcttctgt tgaaaagttg tttgccaaac
     3001 ttgtcaaccg gcgggcggat gtgatgtagt ttgccgaacg gatggaaatg ccgtctgaag
     3061 cgtgttcaga cggcattttt caagttccgg ctttgatgtt ccgttccaat ccccctatcc
     3121 gttgtccgat gtctttcaaa ttggaatatt gttcgaccaa tcgcggcacg tcgtccaaac
     3181 tcatggcaaa catccacaga taagtgccga ccgaatagac atgccccgcg ctgctgtagc
     3241 ctttgagcgt catcatcaca aaagcaaagc cgaacaaaat acccatcgcc gtgccgacgc
     3301 agagatagcc gaaggcttcg cggttggaaa tcagcacacg caggcgcgca agcagtccgt
     3361 aatggcggta cagctgccgc cggtcgcctt ttcggataaa gtggttgtcg cgttccaagc
     3421 tgttcttcag gcggaaatac aggttttcgc tgatggcggc aaaacgtggc aaaagccata
     3481 aaaacaacgc aagtatgccc accgccgaca cgccgaccca aaattccagc accagcagca
     3541 tgatgcacgc gccgaatatg gatacgacgg atgtcgcggc aatcggcagg tgttcttcaa
     3601 aaaagctgac aaactcacgc gacagggcaa cccgcgcagt taccgccgaa tgcgggactt
     3661 gtcgctgccg ctgttccaac acgaccggca cggcgatttc ggtataaatc cgcgtaaacg
     3721 tgcgcgtatc ggcaatccgc cgcgccgcac cgaccagcca catcaaaagc acaaccaaag
     3781 cgtacagcaa cgcctgccac acctcccccg caatcacggc attgatcgcc cggccgccaa
     3841 acactggata taataccagc atccaaaggt tttccagtcc gaccagggaa aacgtgccga
     3901 gcagacgctt gcggtgggtt tgggctatgt gtttcaacat tttccacata tttgctccct
     3961 attttttatt ttccgagatt gttttttcca tcacttcagc cagtgcatcc aaatcggcaa
     4021 acagccgggt tgtgcgcttg tcgccgaatg tggcaaatac tttgtcgctg aattcctgcg
     4081 cgctttctgt taaaggtgcg gcatgggctt tgcctttttc ggtcagcgac agcaaccgtt
     4141 cgcgccggtc ctgttcgctt tcctgccatt caatcaaccc ttgtccggca agggttttgc
     4201 atacgcctga aacggtctgt ttgggcaaac tccactcttc gccgatatgc ttttgcgtgc
     4261 ggctgccttc ggttgccagg gtataaagta cggcaaagag gttgtaattc agatcctgct
     4321 gcccgatcca tttgtcgaag acattgcaaa tcaggttgat acgggtgcca agttggtcga
     4381 gttggttcat aattggtctt gatattgact aaatttgtgc g
//
LOCUS       DAXHPV010000156         4412 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.156, whole genome shotgun sequence.
ACCESSION   DAXHPV010000156 DAXHPV010000000
VERSION     DAXHPV010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4412)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4412)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4412
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.156"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..410)
                     /locus_tag="ACFM6C_001780"
     CDS             complement(<1..410)
                     /locus_tag="ACFM6C_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HFC6159194.1"
                     /translation="MLCPEKMSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARC
                     GLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASLQELEALPGIGPAKAKAIAE
                     YRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVG"
     gene            complement(446..559)
                     /gene="rrf"
                     /locus_tag="ACFM6C_001781"
     rRNA            complement(446..559)
                     /gene="rrf"
                     /locus_tag="ACFM6C_001781"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(656..3547)
                     /locus_tag="ACFM6C_001782"
     rRNA            complement(656..3547)
                     /locus_tag="ACFM6C_001782"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(3955..4030)
                     /locus_tag="ACFM6C_001783"
     tRNA            complement(3955..4030)
                     /locus_tag="ACFM6C_001783"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3995..3997),aa:Ala,seq:tgc)
     gene            complement(4036..4112)
                     /locus_tag="ACFM6C_001784"
     tRNA            complement(4036..4112)
                     /locus_tag="ACFM6C_001784"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4076..4078),aa:Ile,seq:gat)
     gene            complement(4214..>4412)
                     /locus_tag="ACFM6C_001785"
     rRNA            complement(4214..>4412)
                     /locus_tag="ACFM6C_001785"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          962 a         1278 c          948 g         1224 t
ORIGIN      
        1 ccgaccgaag cctgatcctt cagcttcgcc agcaccgcag ggccgatgcc ctttaccttg
       61 gtcaaatcgt ccacagactt gaacgcaccg ttttgcgcac ggtattccgc aatggccttc
      121 gccttcgccg ggcctatgcc tggcagcgcc tccaactcct gcagcgaagc cgcattgatg
      181 tttaccgccg caagggagaa ggcgcaggag aacagcatac agaacagcac gaacattttc
      241 ttcatggttt ttcctttaag ggttgcaaac aataaaccgc atcttgcgac gataaaacga
      301 gtcattctaa aatgaatatc ccaaagtttc aagccgttcc tccgcaaacc cgaccggaca
      361 ccgtacggat gccgtcccgc catcaccgac attttttccg ggcaaagcaa aaacccccga
      421 ataatcgggg gttttctgaa tgggtgtttg gcagtgacct actttcgcat ggaagaacca
      481 cactatcatc ggcgctgagt cgtttcacgg tcctgttcgg gatgggaagg cgtgggacca
      541 actcgctatg gccgccaaac ttaaactgtt acaaatcggt aaagccttaa tcaatatatt
      601 cggtaatgac tgaatcagtc agtaagcttt tatctcttga agttcttcaa atgatagagt
      661 caagcctcac gagcaattag tatgggttag cttcacgcgt taccgcgctt ccacacccca
      721 cctatcaacg tcctggtctc gaacgactct ttagtgcggt taaaccgcaa gggaagtctc
      781 atcttcaggc gagtttcgcg cttagatgct ttcagcgctt atctcttccg aacttagcta
      841 cccggctatg caactggcgt tacaaccggt acaccagagg ttcgtccact ccggtcctct
      901 cgtactagga gcagcccccg tcaaacttcc aacgcccact gcagataggg accaaactgt
      961 ctcacgacgt tttaaaccca gctcacgtac cactttaaat ggcgaacagc catacccttg
     1021 ggaccgacta cagccccagg atgtgatgag ccgacatcga ggtgccaaac tccgccgtcg
     1081 atatgaactc ttgggcggaa tcagcctgtt atccccggag taccttttat ccgttgagcg
     1141 atggcccttc catacagaac caccggatca ctatgtcctg ctttcgcacc tgctcgactt
     1201 gtcggtctcg cagttaagct accttttgcc attgcactat cagtccgatt tccgaccgga
     1261 cctaggtaac cttcgaactc ctccgttacg ctttgggagg agaccgcccc agtcaaactg
     1321 cctaccatgc acggtccccg acccggatga cgggtctggg ttagaacctc aaagacacca
     1381 gggtggtatt tcaaggacgg ctccgcagag actggcgtct ctgcttctaa gcctcccacc
     1441 tatcctacac aagtgacttc aaagtccaat gcaaagctac agtaaaggtt cacggggtct
     1501 ttccgtctag cagcgggtag attgcatctt cacaaccact tcaacttcgc tgagtctcag
     1561 gaggagacag tgtggccatc gttacgccat tcgtgcgggt cggaacttac ccgacaagga
     1621 atttcgctac cttaggaccg ttatagttac ggccgccgtt tactggggct tcgatccgat
     1681 gctctcacat cttcaattaa ccttccagca ccgggcaggc gtcacaccct atacgtccac
     1741 tttcgtgtta gcagagtgct gtgtttttaa taaacagtcg cagccaccta ttctctgcga
     1801 ccctccgggg cttacggagc aagtccttaa ccttagaggg cataccttct cccgaagtta
     1861 cggtatcaat ttgccgagtt ccttctcctg agttctctca agcgccttag aattctcatc
     1921 ctgcccacct gtgtcggttt gcggtacggt tcgattcaaa ctgaagctta gtggcttttc
     1981 ctggaagcgt ggtatcggtt gcttcgtgtc cgtagacact cgtcgtcact tctcggtgtt
     2041 aagaagaccc ggatttgcct aagtcttcca cctaccggct taaacaagct attccaacag
     2101 cttgccaacc taaccttctc cgtccccaca tcgcatttga atcaagtaca ggaatattaa
     2161 cctgtttccc atcgactacg catttctgcc tcgccttagg ggccgactca ccctacgccg
     2221 atgaacgttg cgcaggaaac cttgggcttt cggcgagcgg gcttttcacc cgctttatcg
     2281 ctactcatgt caacattcgc acttctgata cctccagcac actttacaat gcaccttcat
     2341 cggcctacag aacgctcccc taccatgccg gtaaaccggc atccgcagct tcggttatag
     2401 atttgagccc cgttacatct tccgcgcagg acgactcgac cagtgagcta ttacgctttc
     2461 tttaaatgat ggctgcttct aagccaacat cctggctgtc tgggccttcc cacttcgttt
     2521 accacttaat ctatcattgg ggaccttagc tggcggtctg ggttgtttcc ctcttgacaa
     2581 cggacgttag cacccgctgt ctgtctcccg aggaaccact tgatggtatt ctgagtttgc
     2641 catgggttgg taagttgcaa taacccccta gccataacag tgctttaccc ccatcagtgt
     2701 cttgctcgag gcactaccta aatagttttc ggggagaacc agctatctcc gagtttgttt
     2761 agcctttcac ccctatccac agctcatccc cgcattttgc aacatgcgtg ggttcggtcc
     2821 tccagtacct gttacggcac cttcaacctg gccatggata gatcactcgg tttcgggtct
     2881 acacccagca actcatcgcc ctattaagac tcggtttccc tacgcctccc ctattcggtt
     2941 aagctcgcta ctgaatgtaa gtcgttgacc cattatacaa aaggtacgca gtcacacctc
     3001 tagggcgctc ccactgtttg tatgcatcag gtttcaggtt ctgtttcact cccctcccgg
     3061 ggttcttttc gcctttccct cacggtactg gttcactatc ggtcgatgat gagtatttag
     3121 ccttggagga tggtcccccc atattcagac aggatttcac gtgtcccgcc ctacttttcg
     3181 tacgcttagt accgctgttg agatttcgaa tacgggactg tcacccacta tggtcaagct
     3241 tcccagcttg ttcttctatc tcgacagtta ttacgtacag gctcctccgc gttcgctcgc
     3301 cactacttgc ggaatctcgg ttgatttctt ttcctccggg tacttagatg gttcagttct
     3361 ccgggttcgc ttctctaagt ctatgtattc aacttaggat actgcacaga atgcagtggg
     3421 tttccccatt cggacatcgc ggaatcattg ctttattgcc agctcccccg cgcttttcgc
     3481 aggcttacac gtccttcgtc gcctatcatc gccaaggcat ccacctgatg cacttattca
     3541 cttgactcta tcatttcaag aacttctttg acttcgtttg cctacctgtt gactaagtaa
     3601 aagcaaactt gaaattccta ctttgataaa gcttactgct ttgttgtgtc ttaatcctgc
     3661 cttttgtgtt tcaggattaa gtcgatacaa tcatcaccca aatactgtgt ttgttttctt
     3721 ttctctcgcg agagattttt atcctttgca aagaataaaa aatcaaaaca aacgctttgt
     3781 ctttgtttgt tgatttcggc tttccaattt gttaaagatc gatgcgttcg atattactat
     3841 ctactgtgca agtcaaaacg agctgattat tatatcagca ttttgttctt ggtcaagtgt
     3901 gacgtcgccc tgaatggatt ctgttccatt cttccgtttt gatttgtaca gtattggtgg
     3961 aggcaaacgg gatcgaaccg atgaccccct gcttgcaaag caggtgctct accaactgag
     4021 ctatgccccc gttcttggtg ggtctgggag gacttgaacc tccgacccca cgcttatcaa
     4081 gcgtgtgctc taaccagctg agctacaaac ccggattctc ttcttaagcg aatcttgcct
     4141 tcactcaagc ttcttccgca tctttttcag tttaccgata agtgtgaatg cctaaagcct
     4201 cttctttctc tagaaaggag gtgatccagc cgcaggttcc cctacggcta ccttgttacg
     4261 acttcacccc agtcatgaag cataccgtgg taagcgggct ccttgcggtt accctaccta
     4321 cttctggtat cccccactcc catggtgtga cgggcggtgt gtacaagacc cgggaacgta
     4381 ttcaccgcag tatgctgacc tgcgattact ag
//
LOCUS       DAXHPV010000157         4410 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.157, whole genome shotgun sequence.
ACCESSION   DAXHPV010000157 DAXHPV010000000
VERSION     DAXHPV010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4410
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.157"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(153..398)
                     /locus_tag="ACFM6C_001786"
     CDS             complement(153..398)
                     /locus_tag="ACFM6C_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159195.1"
                     /translation="MLKSIEFNSHIRNRLAAYLKGRGLDFQTAMQEEKGNKEIAAIVH
                     SGLPTLVRKLYSEQKMQKFFWEKRDLIADYISRRMQG"
     gene            510..938
                     /locus_tag="ACFM6C_001787"
     CDS             510..938
                     /locus_tag="ACFM6C_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HFC6159196.1"
                     /translation="MMFSWFKLFHLFFVISWFAGLFYLPRIFVNMAMIDAPRGNPEYV
                     RLSDMAVRLYRFMSPLGFGAVVFGAAIPFAAGWWGSGWVHVKLCLGLMLLAYQLYCGV
                     LLRRFQDYSNAFSHRWYRVFNEIPVLLMVAALYLVVFKPF"
     gene            950..1426
                     /locus_tag="ACFM6C_001788"
     CDS             950..1426
                     /locus_tag="ACFM6C_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HFC6159197.1"
                     /translation="MPIEIERRFLIGNDNWRQYADEPLLLRQGYLSVEKERTVRVRIA
                     GQRAWLTLKGYISELSRSEFEYEIPLADAEKMMETMCPFKMEKWRYPVRWGGSLFEID
                     VFLGDNAPLVVAEIELPDENADFDRPDWLGREITADGMFTNAYLSRHPFSSWKNAV"
     gene            complement(1776..2264)
                     /locus_tag="ACFM6C_001789"
     CDS             complement(1776..2264)
                     /locus_tag="ACFM6C_001789"
                     /EC_number="1.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004146 - dihydrofolate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HFC6159198.1"
                     /translation="MLKITLIAACAENLCIGADNAMPWHIPEDFAFFKAYTLGKPVIM
                     GRKTWESLHVKPLPGRRNIVISRQADYCAAGAETAASLEAALALCAGAEEAVIMGGAQ
                     IYDQAMPLATDLRITEVDLSVEGDAFFPEIDRTHWKEAERTERRVSSKGTSYAFVHYL
                     RY"
     gene            complement(2332..3387)
                     /gene="aroG"
                     /locus_tag="ACFM6C_001790"
     CDS             complement(2332..3387)
                     /gene="aroG"
                     /locus_tag="ACFM6C_001790"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HFC6159199.1"
                     /translation="MTHHYPTDDIKIKEVKELLPPIAHLYELPISKEASGLVHRTRQE
                     ISDLVHGRDKRLLVIIGPCSIHDPKAALEYAERLLKLRKQYENELLIVMRVYFEKPRT
                     TVGWKGLINDPHLDGTFDINFGLRQARSLLLSLNNMGMPASTEFLDMITPQYYADLIS
                     WGAIGARTTESQVHRELASGLSCPVGFKNGTDGNLKIAIDAIGAASHSHHFLSVTKAG
                     HSAIVHTGGNPDCHVILRGGKEPNYDAGHVSEAAEQLRAAGVTDKLMIDCSHANSRKD
                     YTRQMEVAQDIAAQLEQDGSNIMGVMVESHLVEGRQDKPEVYGKSITDACIGWDATEE
                     LLALLAGANKKRMARAG"
     gene            complement(3549..3776)
                     /locus_tag="ACFM6C_001791"
     CDS             complement(3549..3776)
                     /locus_tag="ACFM6C_001791"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159200.1"
                     /translation="MGNTRIPIKSFFKQLVLFVFNIFLAYEILPDVQAESAAGCSVPD
                     CRGNGKTDVPCGFVRMNGGYCFYQSVSFSLE"
     gene            4054..4311
                     /locus_tag="ACFM6C_001792"
     CDS             4054..4311
                     /locus_tag="ACFM6C_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159201.1"
                     /translation="MTTQMCASRDVSKSAKGWSVGIGLNVGKQLTDSVGLEFDPYYRH
                     KTICKPREIVLDGDKTKMGCSKSNEYGFRVTATFYSQLKSK"
     gene            complement(4293..>4410)
                     /locus_tag="ACFM6C_001793"
     CDS             complement(4293..>4410)
                     /locus_tag="ACFM6C_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003755953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HFC6159202.1"
                     /translation="PELNPIEKVWANIKRYLQTVLSDYARFDDALLSYFDFN"
BASE COUNT         1057 a         1136 c         1023 g         1194 t
ORIGIN      
        1 ccgcctgcgc gggaatgacg gctcaaaagt tacgaaacga aaaataaccg aaaccaaaca
       61 agtcggattc ccgcgcgggc gggaatgacg ataagcgtaa tttcaatctg ccatattgtc
      121 ttttcacttg cctgaaaaca gatttcagcc acctatccct gcatccggcg gctgatgtag
      181 tcggcaatca aatcccgctt ttcccaaaaa aacttctgca ttttttgttc ggaatacagt
      241 ttgcggacca gagtgggcaa accgctgtgg acgatggcgg cgatttcttt gttgcctttt
      301 tcttcctgca ttgccgtctg aaaatccaaa cccctgcctt tcagatatgc tgcaaggcgg
      361 ttgcggatgt gggaattgaa ttcgatggat ttgagcattt tgcctccgtt ttgcggtaag
      421 gatttattcg atttgtttat ccgcctgatt ttatcacgtt tcccaagcgg tttgcctgta
      481 caataccgct tttcggcagg gtgtgggcga tgatgttttc ttggttcaag ctgtttcact
      541 tgttttttgt catttcgtgg tttgcagggc tgttttacct gccgaggatt ttcgtcaata
      601 tggcgatgat tgatgcgccg cgcggcaatc ccgagtatgt gcgcctgtcg gatatggcgg
      661 tgcggctgta ccgttttatg tcccctttag gtttcggtgc ggtcgtgttc ggcgcggcga
      721 taccgtttgc cgccggctgg tggggcagcg gctgggtaca cgtcaaactg tgtttgggct
      781 tgatgctttt ggcttaccag ttgtattgcg gcgtgctgct gcgccgtttt caggattaca
      841 gcaatgcttt ttcacaccgc tggtaccgcg tgttcaacga aatccccgtg ctgctgatgg
      901 ttgccgcgct gtatctggtc gtgttcaaac cgttttgacg gagcatctta tgccgataga
      961 aatcgaacgc cgttttttga ttggaaacga caactggcgg caatacgccg acgaaccgct
     1021 gctgttgagg cagggttatc tgtctgttga aaaagaacgc accgtccgtg tccgtattgc
     1081 cggacaacgg gcgtggctga cgctgaaagg ctatatttcg gaactcagcc gcagtgagtt
     1141 tgaatacgaa atcccgcttg ccgatgcgga aaagatgatg gaaacgatgt gtccgtttaa
     1201 gatggaaaaa tggcgttatc cggtcagatg gggcggcagc ctgtttgaaa tcgatgtttt
     1261 tcttggcgat aatgcgcctt tggtcgtcgc ggaaatcgag ttgcccgacg agaatgccga
     1321 ttttgaccgt ccggactggc tgggacggga aatcactgcc gacggtatgt ttaccaatgc
     1381 ctatttgagc aggcatccgt tctcaagctg gaaaaatgcc gtctgaagcg gcttcagacg
     1441 gcattctccg acaaccatcg caaatccaaa gacagcctct atatccttat ttctgctttc
     1501 tttgttccat tattcccaat aaatccccat aacctaaaat ctcgtcattc ccgcgcaggc
     1561 gggaatccgg ttctttaaac ttcggttttt tccgataaat tgctttagct tttcgtttcc
     1621 ggattcccgc ttttgcggga atgacgatgg aagattgttg ttatttcgga taaattaccc
     1681 taactttaaa atcccggatt cccatcttcg ggggaataac aatattttct atttcagccc
     1741 atcatttgcg ggggatttta tagagagttt atatttcaat atctcaaata atgcacaaaa
     1801 gcatagctcg tgcctttgct gctgacacgg cgttccgtcc gctctgcttc tttccaatgc
     1861 gtccggtcta tttcggggaa aaacgcatct ccttccaccg acaaatccac ttcggttatc
     1921 cgcaaatcgg tcgccaatgg cattgcttgg tcgtatatct gcgcgccgcc cataatgacg
     1981 gcttcttccg cgcctgcgca caatgccaat gccgcctcca aacttgccgc cgtttccgca
     2041 cctgccgcgc aataatccgc ctgcctgctg atgacgatgt tcctccgtcc gggcaggggt
     2101 ttgacgtgca gggattccca cgttttccgc cccataatga cgggtttgcc caaggtatag
     2161 gctttgaaaa atgcaaaatc ttcggggatg tgccaaggca tagcattgtc cgccccgatg
     2221 cacaggtttt ccgcacacgc cgcaattagg gttattttga gcatatttcc tccacaaaaa
     2281 tgccgtctga acgcttcaga cggcatttta tgacattctg cgtcaaaaat ctcaaccggc
     2341 gcgcgccata cgttttttgt ttgcacctgc caacaatgcc aacagttctt cagtcgcgtc
     2401 ccaaccaata cacgcatcgg taatgctttt gccgtacact tccggcttat cctgtctgcc
     2461 ttcgaccaaa tggctttcca ccatcacgcc cataatattg ctcccgtcct gttccaattg
     2521 ggcagcaata tcttgtgcca cttccatctg ccgggtgtaa tccttgcggc tgttggcgtg
     2581 gctgcaatct atcatcagct tatcggttac ccctgccgca cgcagttgtt ccgccgcctc
     2641 gctgacgtgt cccgcatcat aattcggctc ttttccgccg cgcaaaatga catgacagtc
     2701 gggattgccg ccggtatgga caatggcgga atgtccggcc ttggttacag acaagaaatg
     2761 atgcgaatgg ctcgccgcac cgattgcgtc gatggcaatc ttcaaattgc cgtccgtacc
     2821 gtttttaaag ccgacggggc aggacagccc gcttgccaat tcgcggtgaa cttggctttc
     2881 ggtcgtccgc gcaccgattg ccccccaaga aatcaagtcc gcataatatt gcggcgtaat
     2941 catatccaaa aactcggtag aggcaggcat acccatattg ttcagcgaca acaacaggct
     3001 gcgcgcctga cgcaaaccga aattgatatc gaacgtaccg tccaaatgcg ggtcgttaat
     3061 caaacctttc caacccaccg tcgtcctcgg cttctcgaaa taaacgcgca tcacaatcaa
     3121 aagctcgttt tcatactgct tgcggagttt caacaaacgc tccgcatatt ccaacgccgc
     3181 tttcggatcg tgaatcgaac acggcccgat aataaccaac agccgcttgt ccctgccgtg
     3241 aaccaaatcg gaaatttcct gacgggtgcg gtgaaccaag cccgaagcct ctttggaaat
     3301 cggcagctcg taaagatggg caatcggcgg caacaactct ttaacttctt taatcttaat
     3361 atcgtctgtg gggtaatggt gtgtcatctt gcatctttcc tgatggtttt ttatacgcgg
     3421 cttaggttac atcgtttacc ttgcacaaac aagtgcaaca tattactaca aagctatttt
     3481 atttcaaaat aactgatata tcttttttca tagattttaa atttcatatt tttaatattt
     3541 taggaatttt attccaaaga aaaagaaaca gattgataaa aacaataccc gccattcatt
     3601 cggacaaaac cgcacggaac atccgttttc ccatttccac gacaatccgg tacagaacac
     3661 cccgctgccg attccgcctg cacatccggc aaaatttcat acgcaaggaa aatgttgaaa
     3721 acaaaaagaa ctaattgctt gaaaaaagat ttaattggaa tgcgggtatt tcccacactt
     3781 tctccattta ttcatcctca ttataggaag aaaaacatga aaaaaccctg cttgcactct
     3841 cacttgcagc cgtgtccgcc gttacggtag ccgatattcc tgagtctaac ggcaagggca
     3901 aagccatcat cggcgataag gaaaaacacc gttaccaagc atgaaaacct tgttttgaaa
     3961 gtctatggcg aaatccgcca agatttgggg gacggatgat ccctgacccc ttgggcggat
     4021 gcatatgcag atttgcgcgg caaaaccaaa gtgatgacga cccagatgtg tgcttcccgc
     4081 gatgtcagca aaagcgccaa aggttggagt gtcggtatcg gtctgaatgt aggcaaacag
     4141 ttgaccgaca gcgtcggtct cgagtttgat ccatactacc gtcacaaaac aatctgcaaa
     4201 ccccgtgaga ttgttttgga cggcgacaaa accaaaatgg gctgctccaa atccaacgag
     4261 tacggcttcc gcgtaaccgc aacgttctat agtcaattaa aatcaaagta ggacagtagt
     4321 gcatcgtcaa atcgggcgta atcagacaaa acggtttgca gataccgctt aatattcgcc
     4381 cacactttct caatcgggtt gagttcaggt
//
LOCUS       DAXHPV010000158         4316 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.158, whole genome shotgun sequence.
ACCESSION   DAXHPV010000158 DAXHPV010000000
VERSION     DAXHPV010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4316
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.158"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(152..2080)
                     /gene="dnaK"
                     /locus_tag="ACFM6C_001794"
     CDS             complement(152..2080)
                     /gene="dnaK"
                     /locus_tag="ACFM6C_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HFC6159203.1"
                     /translation="MAKVIGIDLGTTNSCLAISENGQTKVIENAEGARTTPSVIAYLD
                     GGEILVGAPAKRQAVTNAKNTIYAAKRLIGHKFEDKEVQRDIESMPFEIIKANNGDAW
                     VKAQGKELSPPQISAEVLRKMKEAAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGRI
                     AGLDVKRIINEPTAAALAFGMDKGDNKDRKVAVYDLGGGTFDISIIEIANLDGDKQFE
                     VLATNGDTFLGGEDFDQRLIDYIIDEFKKEQGIDLKQDVMALQRLKEAAEKAKIELSS
                     GQQTEINLPYITMDATGPKHLAMKITRAKFESLVEDLIARSIEPCRTALKDAGLSTGD
                     IDDVILVGGQSRMPKVQEAVKAFFGKEPRKDVNPDEAVAVGAAIQGEVLSGGRSDVLL
                     LDVTPLSLGIETMGGVMTKLIQKNTTIPTKASQVFSTAEDNQSAVTIHVLQGERERAS
                     ANKSLGQFNLGDIAPAPRGMPQIEVTFDIDANGILHVSAKDKGTGKAANITIQGSSGL
                     SEEEIERMVKDAEANAEEDKKLTELVASRNQAEALIHSVKKSLADYGDKLDAAEKEKI
                     EAALKEAEEAVKGDDKAAIDAKAEALGTASQKLGEMVYAQAQAEAQAGESEQANASAK
                     KDDDVVDADFEEVKDDKK"
     gene            complement(2288..2560)
                     /locus_tag="ACFM6C_001795"
     CDS             complement(2288..2560)
                     /locus_tag="ACFM6C_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159204.1"
                     /translation="MKKTGKYLIYAAAFTAFCFAFQENRSEAKQPDITLSASLCEKFN
                     ILNAKDMDAEQVSLSKECDIIESSHDWEKEYGNLNEQEMLAGIVYE"
     gene            2746..3432
                     /locus_tag="ACFM6C_001796"
     CDS             2746..3432
                     /locus_tag="ACFM6C_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HFC6159205.1"
                     /translation="METFKDRLVFLWKSEAKQAKIASDIEMTIAGFSRIWNEGGLPKS
                     ETLKKIKQLKGCSIDWLLTGEGNPFPDEAPKKSLAYDTLGNEVDTDEFVFVPRYDIRA
                     AAGYGQFVDHEEPVFTMAFRRHWIENYVTRDTKNLSVISVKGDSMEGVLNDGDSILVN
                     HGENTPRDGLYVLRINENLLVKRLQIVPGGIINVISANEAYPAFEINLNDLTDDVEII
                     GRVEWFGRTI"
     gene            3564..3902
                     /gene="erpA"
                     /locus_tag="ACFM6C_001797"
     CDS             3564..3902
                     /gene="erpA"
                     /locus_tag="ACFM6C_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HFC6159206.1"
                     /translation="MSDESPIIFTDSCCAKVADLIAEENNPDLKLRVFVNGGGCSGFQ
                     YGFTFDEIKNDDDFEIEKNGLVFLVDPMSYQYLVGAEIDYTESLQGSQFVIRNPNAET
                     TCGCGSSFSV"
     gene            3919..4065
                     /locus_tag="ACFM6C_001798"
     CDS             3919..4065
                     /locus_tag="ACFM6C_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159207.1"
                     /translation="MPSERSDGIFTFGKYIIGMNSHIIRLFEDESGFPKGTGGTVSGV
                     FVPL"
     gene            4062..>4316
                     /locus_tag="ACFM6C_001799"
     CDS             4062..>4316
                     /locus_tag="ACFM6C_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HFC6159208.1"
                     /translation="MIEMSKDYRNDLYDVYVSYPPQVDRGLIRECLRENLGEEKAEGL
                     IESLDSKPQVLVEEKCTWAKREELHDYFSYLGLDIITRRYS"
BASE COUNT          994 a          867 c         1134 g         1321 t
ORIGIN      
        1 aaaaatttcc agagaaccga tacaacagtt ggaacttggg tttgggaata ttacggtaga
       61 tgaacttgga acctctgtta tgctatggtc ttttatctca attgaaaaaa gcgcgaatca
      121 aacggttcgc gcttttttca gacggcatca attatttttt gtcgtctttt acttcttcaa
      181 agtcggcatc tacgacatca tcgtctttct ttgcagaagc attggcttgt tcgctttcgc
      241 ctgcttgggc ttcagcttgt gcttgagcgt aaaccatttc gcccagtttt tggctggctg
      301 tgcccagcgc ctcggctttg gcatcgatgg cggctttgtc gtcgcctttc acggcttctt
      361 cggcttcttt cagcgcggct tcgatttttt ctttttcggc agcgtcgagt ttgtcgccgt
      421 agtccgccaa agattttttc acggagtgaa tcagggcttc ggcttggttg cgggaagcga
      481 ccaattcagt cagcttttta tcttcctcag cattggcttc ggcatctttc accatgcgtt
      541 cgatttcttc ttcgctcaaa cctgaagaac cttggatggt aatgttggcc gctttgccag
      601 tgcctttgtc tttggcggaa acgtgcaaga taccattggc gtcgatgtcg aaagtaactt
      661 caatttgcgg cataccgcgt ggtgcaggtg cgatgtcgcc caagttgaac tgacccaaag
      721 atttgttggc agaagcgcgt tcgcgttcgc cttgcagtac gtggatggtt actgcgcttt
      781 ggttgtcttc ggcggtagag aacacttgcg acgctttagt cggaatagtt gtgttctttt
      841 gaatcagctt ggtcatcacg ccgcccatgg tttcgatacc caaggacaga ggggttacgt
      901 ccagcagcaa tacgtcgctg cggccgccgc ttaacacttc gccttgaatc gctgcgccta
      961 cggcaacggc ttcgtcgggg ttcacgtctt tgcgaggctc tttaccgaag aaggctttaa
     1021 cggcttcttg tactttcggc atacggcttt gaccaccgac caagattacg tcgtcgatgt
     1081 cgccggtgct cagaccggca tctttcaatg cggtgcggca aggctcgata gagcgggcaa
     1141 tcaggtcttc aaccaggctt tcgaatttgg cgcgggtaat tttcatcgcc aagtgtttcg
     1201 gaccggttgc gtccatggta atgtacggca ggttgatttc ggtttgctgg ccgctggaca
     1261 attcgatttt ggctttttcg gcagcttctt tcagacgttg cagagccatt acgtcttgtt
     1321 tcaaatcaat gccttgttct tttttaaact cgtcaatgat gtagtcgatc aagcgttggt
     1381 cgaagtcttc accgcccaag aaagtatcgc cgttggtagc caatacttca aattgtttgt
     1441 cgccgtcgag gttggcgatt tcgatgatgg aaatatcgaa agtaccgccg cccaagtcat
     1501 atacggctac tttgcggtct ttgttgtcgc ctttgtccat accgaatgcc aaagcggctg
     1561 cggtcggctc gttgatgatg cgtttcacgt ccaaaccggc gatacggcct gcgtctttgg
     1621 tagcttgacg ttggctgtcg ttgaagtagg cagggacggt aatcacggct tcggttactt
     1681 tttcgcccaa gtaagcttcg gcggcttctt tcattttacg caggacttct gcggaaattt
     1741 gaggaggaga cagctctttg ccttgtgctt ttacccatgc gtcgccgttg ttggctttga
     1801 tgatttcgaa aggcatagat tcgatgtcgc gttggacttc tttgtcttca aatttgtggc
     1861 cgatcaggcg tttggcggcg taaatggtgt ttttagcgtt ggttacggct tggcgtttgg
     1921 caggcgcacc gacgaggatt tcgccgccgt ccaaataagc gataacggac ggcgtggtgc
     1981 gtgcgccttc tgcgttttcg atcactttgg tttgaccgtt ttcggaaatg gccaaacaag
     2041 agttggttgt acctaagtcg ataccgatta cttttgccat gtggataatc ctatttgatt
     2101 ttgcttattt tgagaaatat gttggaacat tttgtcccga tgggctgtaa atagggcggg
     2161 cggcgggctg tttcaagcta cagcatggct ataagtatat aactttatga atatattggt
     2221 tttatatttg atttaataca tttggctcca atgcatttaa gcataatatt tcaaatggca
     2281 ggcaggttta ttcatagacg atgccggcga gcatttcctg ttcgttcaag ttgccgtact
     2341 ctttttccca gtcgtgtgaa gactcgatga tgtcgcattc tttggaaagg gagacttgtt
     2401 ctgcatccat atctttggcg ttcagtatgt tgaatttttc gcacagggat gcggataaag
     2461 tgatgtcagg ctgtttggct tcagaacggt tttcttggaa ggcaaagcag aatgcggtaa
     2521 atgccgcagc atagataaga tatttgccgg ttttcttcat tttctatcct ttttctgtca
     2581 actcaggatt aaacctatgg aaaatcttaa aaattatgta ttgagtaaga aaaatcataa
     2641 tttaaattta gtttatcata gttgttccgt ttttgggata gctaaggtaa aatatatttc
     2701 atgtttactt tagatgattg aatgaagggg agcggaagga tatttatgga aacctttaaa
     2761 gacagactgg tttttttatg gaaaagcgaa gcgaagcagg caaaaatcgc atccgatatt
     2821 gaaatgacga ttgcgggctt cagcaggata tggaatgaag gcggtctgcc gaagtctgaa
     2881 acattaaaaa aaatcaagca gttgaagggg tgtagtatcg attggctgct gaccggggag
     2941 ggtaatccgt ttccggatga agccccaaaa aaatcccttg cttacgatac cttgggcaat
     3001 gaagttgata cggacgagtt tgtctttgtg ccgagatatg atattcgggc ggctgcggga
     3061 tacgggcagt ttgtcgatca tgaggaaccg gtatttacaa tggcgttcag acggcattgg
     3121 attgagaatt atgttacccg cgatacgaaa aacctgtctg taatttccgt caagggggat
     3181 tctatggagg gggttttgaa tgacggcgat tcgattttgg tcaatcatgg tgaaaatacg
     3241 ccgagggacg gtctgtatgt gttgcggatt aatgaaaatc tgctggttaa acgtttacag
     3301 attgtaccgg gcgggattat caatgtgatt tctgcaaacg aggcttatcc tgcttttgaa
     3361 atcaatttga acgatttgac cgatgatgtg gagattatcg ggcgtgtcga gtggttcggc
     3421 aggacgattt gagtttgggg cttgaaattg caggcggtca aacttatcta ttggaacaat
     3481 tcctttttca aaggcgaagc ctgcttgcct ttaaaggggg tttgagagag aatgcagaaa
     3541 atattatatt aaggaatcac accatgtcgg atgaaagccc tattattttt actgacagct
     3601 gctgtgccaa agttgccgat ttgattgccg aagaaaacaa tcccgatttg aaattgcggg
     3661 tttttgtcaa tggcggcggc tgttcgggtt tccagtacgg atttactttt gacgaaatca
     3721 aaaacgacga cgattttgaa attgagaaaa acggtttggt ctttttggtc gatccgatga
     3781 gctatcaata tctggtcggt gcggaaatcg actatacgga aagtttgcag ggttcgcaat
     3841 tcgtcatccg caatccgaat gcggaaacaa cctgcggttg cggatcgtcg ttttccgtat
     3901 gaccgcttgg tttgtgtgat gccgtctgaa cgttcagacg gcatttttac ttttggaaaa
     3961 tatattatcg ggatgaattc acatataatc cgattgtttg aagatgaatc gggtttcccg
     4021 aaaggaacgg gcggaacggt atcaggcgta tttgttccct tatgattgag atgagtaaag
     4081 attaccgaaa tgatttgtac gatgtatatg tttcctaccc gccccaagtg gatcgcgggc
     4141 ttatccggga gtgcctcagg gagaatctcg gcgaggaaaa ggcggaagga ttgatcgaat
     4201 cgctcgattc caaacctcaa gtgctggttg aggaaaaatg cacttgggcg aaacgggaag
     4261 agttgcacga ttatttcagc tatttgggtt tggatattat tacccggaga tatagt
//
LOCUS       DAXHPV010000159         4315 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.159, whole genome shotgun sequence.
ACCESSION   DAXHPV010000159 DAXHPV010000000
VERSION     DAXHPV010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4315)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4315)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4315
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.159"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(48..1304)
                     /locus_tag="ACFM6C_001800"
     CDS             complement(48..1304)
                     /locus_tag="ACFM6C_001800"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HFC6159209.1"
                     /translation="MNAAQLDHTAKVLAEMLTFKQPADAVLSAYFREHKKLGRQDRHE
                     IAETAFAALRHYQKISTALRRPHAQPRKAALAALVLGRSTSISQIKDLLDEEETAFLG
                     NLKARKTEFSDGLNTAAELPQWLVEQLQQHWREEEILAFGRSINQPAPLDIRVNTLKG
                     KRDKVLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALL
                     VGAKRGEIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNI
                     HPERISSEHDTRITRLAGKADHVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQH
                     SILDAASKLVKPQGRLVYATCSVLPEENELQVERFLSEHPEFEPVNCAELLQSLKVDL
                     DTGKYLRLDSAKHQTDGFFAAVLQRK"
     gene            complement(1339..2193)
                     /locus_tag="ACFM6C_001801"
     CDS             complement(1339..2193)
                     /locus_tag="ACFM6C_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1853 family protein"
                     /protein_id="HFC6159210.1"
                     /translation="MNYALDALWWKLTDPTVRDLASLLTAPPLWQSGCELGVRELLGK
                     RGFRYLLALDADPAPLTEHLARHAPFGHRLGIYAEELSAFWFANAPHAELLAHNLTVS
                     GSDGSTQGAADFVARLNGKPCHIELTCKYYGGTGKPEDMRGLDPKDTLLGKAAKLTAQ
                     LGLPHTSDGIRTLRQHGLPLDVKPVSIVRGIGFFPQGFNAFEPPLNPYGWRGIYIQDW
                     AEYGFERREARYHLLDRMAYLAPARVAETETLNETEIRRIDNGLIAVLECRPDGFWHE
                     IERIMKAV"
     gene            complement(2264..3082)
                     /locus_tag="ACFM6C_001802"
     CDS             complement(2264..3082)
                     /locus_tag="ACFM6C_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HFC6159211.1"
                     /translation="MTAPKPELPDYLGNIRIVLTRTSHPANIGSAARAMKTMGLHKLT
                     IVAPNLMATPMTENPPVFNPEHPQSFKLPEESFILASGAADVLENATIAASLDEALAD
                     TTIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVQACN
                     RLMTINGNPDYFSLNLAQAVQVVCYEIFSQTDSPMTHLQQEDHAATHEQIKGMVAHME
                     SVMNDIGFFNRRNGERLMRRMQSLFGRANTQTEDIDILRGFFNTLQQRLKDGQS"
     gene            3348..4133
                     /locus_tag="ACFM6C_001803"
     CDS             3348..4133
                     /locus_tag="ACFM6C_001803"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008934 - inositol monophosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006020 - inositol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046855 - obsolete inositol phosphate
                     dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HFC6159212.1"
                     /translation="MNPFLNTAFKAARRAGQMMIRAAGNLDAVKTDSKAFNDFVSDVD
                     RNSEIILVEALKEAYPHHKITCEESGSHGKAAAEYEWIIDPLDGTTNFLHGHPQYAIS
                     MALLHKGVLQEALVYAPERNDVYMASRGKGALLNDRRIRVSNRIELNRCLIGTGFPVV
                     DQSMMDKYLAILKDFLAKTAGGRREGAASLDLCAVATGRFDGFFEFNLKPWDIAAGAL
                     IVQEAGGIVTDMSGEDGWLESGDVVAANPKVLAQMLKIISAHV"
     gene            complement(4114..>4315)
                     /locus_tag="ACFM6C_001804"
     CDS             complement(4114..>4315)
                     /locus_tag="ACFM6C_001804"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159213.1"
                     /translation="QIVQGSPFNQIWVSIFGSFGHLAVSTFLPPLPVKMPSEISARYF
                     RRHTRPFSRIPGSGLKFKRVRK"
BASE COUNT          881 a         1069 c         1309 g         1056 t
ORIGIN      
        1 gatgaaatgc cgtctgaacg ctttgaaaag ggttcagacg gccagggtta tttacgttgc
       61 aatacggcgg cgaagaagcc gtcggtttgg tgctttgccg aatcgaggcg caggtatttg
      121 ccagtatcca aatcgacctt caggctttgc agcagttcgg cgcagttgac gggttcaaat
      181 tcgggatgtt cggacaggaa gcgttcgact tgcagttcgt tttcttccgg caacacgctg
      241 caagtggcgt aaaccaagcg gccttgaggt tttaccagtt tggaggcggc atcgaggatg
      301 ctgtgttgct gttccaaaag gttggcgacg gtctcagcag attggcggta tttgaggtcg
      361 ggattgcggc gcagtgtgcc taagccggag cagggcgcat ccactaaaac gtggtcggct
      421 ttgcctgcca gtcgggtgat acgggtatca tgttcgctgc tgatgcgttc ggggtggata
      481 ttggtcagtc cggcgcgggt catacgcggt ttgaggttgg caaggcgttt ttcggcgatg
      541 tcgaaggcgt agattctgcc tttattggcc atttgcgcac cgacagccaa ggttttgccg
      601 ccggcaccgg cacagaaatc gacaatgatt tcgccgcgtt ttgcgcccac caataaagca
      661 agcagctggc tgccttcgtc ttggacttcc agtgtgccgt ctaaaaacag ttcgtgtttg
      721 ttaagcgcga ttttgttttt caggcggatg ccccaaggcg aataaggcgt ggcctctgca
      781 tcggcacttt cggcttgcaa cagcggcagc actttatcgc gtttgccttt caaagtgttg
      841 acgcggatgt cgagcggggc aggctggttg atgctgcggc cgaaggcgag gatttcttct
      901 tcgcgccaat gctgttgcag ctgttccacc agccattgcg gcaattctgc ggcggtattc
      961 aggccgtctg aaaactcggt tttacgggct ttcaaattgc cgaggaacgc tgtttcttct
     1021 tcatcaagca ggtctttgat ttggctgatg ctggtgcttc tgccgagaac cagtgcggcg
     1081 agtgcggctt tgcgtggctg cgcgtgcgga cggcgcaggg cggtactgat tttttgatag
     1141 tggcgcagcg cggcaaaggc ggtttcggcg atttcgtggc ggtcttggcg gccgagtttt
     1201 ttgtgttcgc ggaaataggc ggagaggacg gcatcggcag gctgtttgaa agtcagcatt
     1261 tcagccaaaa ctttggcggt atggtcgagt tgtgcggcgt tcatcattaa tgggttctct
     1321 taaagttagt aaatggtttc agacggcctt cataatgcgt tcgatttcgt gccaaaaacc
     1381 gtccggccga cattccaaaa cggcaatcaa accattgtcg atgcggcgga tttcggtttc
     1441 gttcaatgtt tcggtttcgg caacacgcgc aggcgcgaga taggccatgc ggtcgagcag
     1501 gtgatagcgc gcttctcggc gttcaaaccc gtattccgcc caatcttgaa tatagatgcc
     1561 gcgccagccg tatgggttaa gcggcggctc aaaggcgttg aaaccttgcg gaaaaaatcc
     1621 gatgccgcgc acgatggaaa cgggttttac gtcaagcggc agaccgtgtt gccgcaaggt
     1681 tcggatgccg tctgaagtgt gcggcagacc gagttgggcg gtcagtttgg cggcttttcc
     1741 caacagcgtg tctttggggt cgagtccgcg catgtcttcg ggtttgcccg tgccgccgta
     1801 atatttgcag gtcagttcga tatggcaggg cttgccgtta agtcttgcca caaaatccgc
     1861 cgcgccttgc gtgctgccgt ccgaaccgga aaccgtgagg ttgtgcgcaa gcagttcggc
     1921 gtgcggcgcg ttggcaaacc aaaatgccga cagttcttcg gcgtaaatgc cgaggcggtg
     1981 tccgaatggg gcgtgtcggg cgaggtgttc cgtcagcggc gcgggatcgg catccaatgc
     2041 caaaagatag cggaaaccgc gtttccccaa tagttcgcgc acgcccaatt cgcaaccgct
     2101 ttgccacaaa ggcggcgcag tcagcagcga ggctaaatcc cgcacggtag ggtcggtcag
     2161 tttccaccac agggcatcga gggcgtagtt catggttttc ctgtttctgt attctgattt
     2221 ttcctgaaat gccgtctgaa aaacggattc agacggcatg cgcttaggat tgcccgtcct
     2281 tcagacgctg ttgcagcgta ttgaaaaaac cgcgcaggat gtcgatgtct tcggtttgcg
     2341 tgttggcgcg tccgaacagg ctctgcatac ggcgcatcag gcgctcgccg ttgcggcggt
     2401 tgaaaaagcc gatgtcgttc atcacgcttt ccatgtgggc gaccatgcct ttgatttgct
     2461 cgtgggtcgc agcgtggtct tcttgttgaa gatgggtcat gggcgaatcg gtttgactga
     2521 agatttcgta gcacacgacc tgcacggctt gggcgaggtt gagcgagaaa tagtcgggat
     2581 tgccgttgat ggtcatcagt cggttgcagg cttggacttc ttcgatgctc aagccgaaag
     2641 tctcgttgcc gaaaaccagt gccactttct cgcctcggtt ggcggcctgc agtaattcgg
     2701 gcaccaaatc gcgcggggtt tgcagcggcg cggtaatttc gcggcggcgg ctggtcaggg
     2761 cgcaggcgat ggtggtgtcg gcaagggctt cgtccaaaga ggcggcaatg gtggcatttt
     2821 ccaaaacatc tgccgcaccg gaagcgagga tgaagctttc ttccggtaat ttaaacgatt
     2881 gcggatgctc cggattgaac acgggcggat tctccgtcat cggcgtagcc atcagattgg
     2941 gggcgacgat ggtcagtttg tgcaggccca ttgttttcat cgcgcgcgcg gcagagccga
     3001 tattggcggg atggctggtg cgggtcagga cgatgcggat gttgccgaga tagtcgggca
     3061 attcgggttt aggggcagtc atgttcggtt ttcggtcgga atggaatagg gtataatgcg
     3121 ccgtcttttt cgttcggacg gtcaaatgcc gtctgaaatg ttctttaaca acgtctgaaa
     3181 tgttctttaa caacgtcgga aatttaacgt tgcgcctgaa gcagacacgc gtcaggcggt
     3241 attttacccg atttggcagg atttacccca accaaataaa ctccgatttt gccgctccga
     3301 aggactgtac gtccgaaccg gcggtatgcc acccttaagg aaatctgatg aatccgtttt
     3361 tgaatacagc ctttaaagcc gcccgccgtg ccggtcagat gatgatacgc gccgcgggca
     3421 atctcgatgc cgtcaaaacc gacagcaaag ccttcaacga ttttgtttcc gatgttgacc
     3481 gcaattccga aatcatcctg gttgaggctt tgaaagaagc ctatccgcac cacaaaatca
     3541 cttgtgaaga aagcggctcc cacggcaaag ccgcagccga gtacgaatgg attatcgatc
     3601 cgctcgacgg cacgaccaat ttccttcacg gtcatcccca atacgccatc tctatggcgc
     3661 tgctgcacaa aggcgtgttg caagaagctt tggtttacgc ccccgaacgc aacgacgtat
     3721 atatggcttc gcgtggcaaa ggcgcgttgc tcaacgaccg ccgcatccgc gtttccaacc
     3781 gcatcgaact gaaccgctgc ctgattggta ccggcttccc tgttgtcgat caaagcatga
     3841 tggacaagta tctggcgatt ttgaaagatt tcttggccaa aaccgccggc ggccgtcgtg
     3901 aaggtgcggc ttctttggat ttgtgcgccg tagcaacagg acgttttgac ggctttttcg
     3961 agtttaacct caaaccgtgg gacattgccg ccggtgcatt gattgttcag gaagcgggcg
     4021 gtatcgtaac cgatatgtcg ggtgaagacg gctggctgga aagcggcgat gttgtcgctg
     4081 ccaatcccaa agtgctggcg caaatgttga aaatcatttc cgcacacgtt taaatttcag
     4141 cccgctcccg ggaatgcggg aaaacgggcg ggtatgccgt ctgaagtatc gcgccgatat
     4201 ttcagacggc atttttactg gcagcggggg caggaaggtg gaaacggcta aatgcccgaa
     4261 actgccgaag atggaaaccc atatctgatt aaacggagaa ccctgtacga tttgt
//
LOCUS       DAXHPV010000160         4262 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.160, whole genome shotgun sequence.
ACCESSION   DAXHPV010000160 DAXHPV010000000
VERSION     DAXHPV010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4262)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4262)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4262
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.160"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            539..2266
                     /gene="ilvB"
                     /locus_tag="ACFM6C_001805"
     CDS             539..2266
                     /gene="ilvB"
                     /locus_tag="ACFM6C_001805"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HFC6159214.1"
                     /translation="MQLSGAQIIVQSLKAEGVEYVFGYPGGAVIEIYDALFQLNKFKH
                     ILTRHEQAAVHAADAYARVSGKVGVALVTSGPGVTNALTGIATAYTDSIPMVVISGQV
                     GNSLIGTDAFQEVDTVGITRPCVKHNFLVTDINELAETIKKAFQIAASGRPGPVVVDV
                     PKDVTQAMAKFSYPQEDIFIRSYQPVVQGHIGQIKKAVQMLASAKRPVVYFGGGVVLG
                     NASEELTRFVRMTGAPCTGTLMGLGAYPSGDRQFLGMLGMHGTYEANLAMQNADVVLA
                     VGARFDDRVVSVPSKFFEKAKKVIHIDVDPSSIAKRVKVDIPIVGDVKNVLSEMVALW
                     QKQEFMPSEDALGKWWKTIEEWRSQDCLWFDNGSEIIKPQYVIQKLAEITGNSAIITS
                     DVGQHQMFAAQYYPFERPRQWLNSGGLGTMGVGLPYAIGAKLAAPDQDVFCITGDGSI
                     QMNIQELSTCFQYRIPVNVITLNNGYLGMVRQWQEIYYGGRESETYFDSLPDFVKLAE
                     AYGHIGIRVDKKSDVEGALLEALNQKDRLVFIDFLTDQKQNVMPMVGNGKGLDEMVLP
                     PHMRADEKA"
     gene            2277..2768
                     /gene="ilvN"
                     /locus_tag="ACFM6C_001806"
     CDS             2277..2768
                     /gene="ilvN"
                     /locus_tag="ACFM6C_001806"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990610 - acetolactate synthase regulator
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HFC6159215.1"
                     /translation="MRHILSVLIENESGAMSRVVGLFSARDYNIDSLAVAPTEDKTLS
                     RMTIVTHGDEQVIEQITKQLNKLIEVIKVVDLNESRFVERELMLVKVRAAGKDRDEFL
                     RLTEIYRGSIIDVTDRSYTIEITGSTDKLDSFLETVGRAQILETVRTGAAGIGRGERI
                     LKI"
     gene            2835..3128
                     /locus_tag="ACFM6C_001807"
     CDS             2835..3128
                     /locus_tag="ACFM6C_001807"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative quinol monooxygenase"
                     /protein_id="HFC6159216.1"
                     /translation="MSNIKIVALVTVKPEYTETLAAQFKELVKASRAEEGNISYDLHQ
                     EIGKPNRFVFVENWKSQAAIDEHNASAHFQAFVQSVDGKTEALEIVLMNEVAD"
     gene            3208..4221
                     /gene="ilvC"
                     /locus_tag="ACFM6C_001808"
     CDS             3208..4221
                     /gene="ilvC"
                     /locus_tag="ACFM6C_001808"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011239815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HFC6159217.1"
                     /translation="MQVYYDKDADLSLIKGKTVAIIGYGSQGHAHAANLKDSGVNVVI
                     GLRQGSSWKKAEAAGHVVKTVAEATKEADVVMLLLPDETMPAVYHAEVTANLKEGATL
                     AFAHGFNVHYNQIVPRADLDVIMVAPKGPGHTVRSEYKRGGGVPSLIAVYQDNSGKAK
                     DIALSYAAANGGTKGGVIETTFREETETDLFGEQAVLCGGVVELIKAGFETLTEAGYA
                     PEMAYFECLHEMKLIVDLIFEGGIANMNYSISNNAEYGEYVTGPEVVNASSKEAMRNA
                     LKRIQTGEYAKMFIQEGNVNYASMTARRRLNADHQVEKVGAQLRAMMPWITANKLVDQ
                     DKN"
BASE COUNT         1114 a         1011 c         1073 g         1064 t
ORIGIN      
        1 aatcaatata ttaagtcgtt gttagccctc ttggttctgt caatgccgtc caatacagtc
       61 cggtgcaatg agccattttc aggaagtatg gttgggaata tttttgatat atcaaaaata
      121 aaatcaagtt caatcaatat cccgagtctt tattgggatg aaaccctgta aattttaaaa
      181 ttcttgatat cgaagaaggg tttttcacat ctgcccctcc tacacaaact gtcaacaatt
      241 tccatctttc aaaaaaggta ctcctgattt tattctttta aaatcaatca ataatttctc
      301 tgctttcaaa aaatattaaa agatgaaaga tttttcttga ttgaactgtc ggtttgcgtt
      361 atcgtttcca ctctttttca caaactctgt gttcctttcc aattgattgg ataatccgtc
      421 tgttgccgtg ttcccccaat gcgcgtaccc taaatcgctg cttggtggaa ttgcattaca
      481 ggtgctgtgg caaagcggtt tgtccctatt ggtttgaaac cgtataaaag aggtcgttat
      541 gcagttatca ggcgcgcaaa tcatagtgca gagtctcaaa gccgaaggtg tcgagtacgt
      601 tttcggttat cccggcggtg cggttatcga aatctacgat gcccttttcc aactcaataa
      661 attcaagcac attctgaccc gtcacgagca ggcggcagta cacgcggcag atgcgtatgc
      721 gcgcgtcagc ggtaaggtgg gcgtggcatt ggttacatcc ggcccgggcg ttaccaatgc
      781 actgaccggt attgctactg cctatacgga ttcgattccg atggtggtca tcagcgggca
      841 ggtaggcaat tccctgattg gtacggatgc gttccaagaa gttgatacgg tgggtattac
      901 ccgtccgtgc gtcaaacaca atttcctggt tacggacatc aatgagttgg cggaaaccat
      961 taaaaaggcg ttccaaattg ccgcaagcgg ccgaccgggg cccgtggtgg ttgatgtccc
     1021 gaaagatgtt acgcaggcga tggcgaaatt cagctatcct caggaagaca tttttatccg
     1081 ttcgtatcaa ccggttgttc aagggcatat cggtcagatt aaaaaggccg tgcagatgtt
     1141 ggcatctgcc aaacgtccgg tcgtctattt tggcggcggc gtggtgttgg gtaatgcttc
     1201 tgaagagctg acccgatttg tccgaatgac gggtgctccg tgcacgggta cgctgatggg
     1261 cttgggcgct tatccttccg gcgaccgcca attcctcggt atgctcggta tgcacggtac
     1321 ttacgaggca aaccttgcca tgcagaatgc ggatgtcgtt cttgccgtag gtgcgcgttt
     1381 tgacgaccgt gtggtttccg taccgtccaa atttttcgag aaggcgaaga aggttatcca
     1441 tatcgatgtc gatccttcca gcatcgccaa acgcgtgaag gtggacattc cgattgtcgg
     1501 cgacgtgaaa aatgttttgt ctgagatggt tgcgctgtgg caaaaacaag agttcatgcc
     1561 gtctgaagat gctttgggca aatggtggaa aaccatagag gaatggcgtt cccaagattg
     1621 cttgtggttt gacaacggca gcgaaattat caagccacaa tatgtgattc agaagcttgc
     1681 cgagattacc ggcaattcgg caatcatcac atcggatgta gggcagcatc aaatgtttgc
     1741 ggctcaatat tatcccttcg aacgtccgcg ccaatggctc aattccggcg gtttgggtac
     1801 gatgggcgtg ggtctgcctt atgcgattgg tgcaaaactt gccgccccgg atcaagacgt
     1861 attctgtatt accggcgacg gctcgattca gatgaacatc caagagttgt ccacctgttt
     1921 ccaatatcgg attccggtta acgtcattac gctgaacaac ggttatctcg gtatggtacg
     1981 ccagtggcag gaaatatatt acggcggccg agagtcggaa acttatttcg attctttgcc
     2041 cgatttcgtc aaacttgccg aggcatacgg ccatatcggt atccgcgtgg acaagaagtc
     2101 tgatgtggaa ggtgcgttgt tggaagcatt gaaccaaaaa gacaggctgg tgtttatcga
     2161 cttcctgacc gaccagaaac agaatgtgat gcccatggtc ggcaacggca aaggtttgga
     2221 cgaaatggta cttccgccgc atatgcgtgc ggacgaaaag gcgtaaggag agacaaatgc
     2281 gacatatctt atctgttctg attgaaaacg aatcaggtgc gatgagccgc gtggtcggtt
     2341 tgttctctgc acgcgattac aatatcgatt ctttggcggt tgcgccgacc gaagacaaaa
     2401 ccctgtcccg tatgaccatc gttacccacg gcgacgagca ggttatcgaa caaatcacca
     2461 agcaactcaa taaattgatt gaagtgatta aagtggtcga tttgaacgaa agccgttttg
     2521 tcgaacgaga actgatgttg gtaaaagtcc gtgccgccgg taaagaccgc gacgaatttt
     2581 tgcgtttgac cgaaatctac cggggcagca tcatcgacgt aaccgaccgc agctatacga
     2641 ttgaaattac cggctcgacc gacaagctgg attccttttt ggaaacggtc ggacgcgccc
     2701 aaattttgga aaccgtacgt acaggcgcgg ccggcatcgg tcgcggtgag cgtattttga
     2761 aaatttaacg ccgtaacctt tcagacggca cggtatttga atgccgtctg aaaaacgaac
     2821 ggcaggagag atttatgtcg aacattaaaa ttgtcgcact ggttaccgtc aaaccggaat
     2881 acacagaaac actggcagca cagtttaaag aactggtcaa agccagccgt gcagaagagg
     2941 gcaacatcag ctacgatctc catcaggaaa tcggcaaacc gaaccgtttt gttttcgtgg
     3001 aaaattggaa atctcaagca gctattgacg aacataacgc cagcgcgcat ttccaagcct
     3061 tcgtccagtc cgtcgacggc aaaaccgaag cgttggaaat cgtattgatg aatgaagttg
     3121 ccgattaagc ggcacactct gtttaacccg tccgaagccg ctcaacattt taaggcttcg
     3181 acaaccattt accttaaagg aaatcaaatg caagtctatt acgataaaga tgccgatctg
     3241 tccctaatca aaggcaaaac cgttgccatc atcggttacg gttcgcaagg tcatgcccat
     3301 gccgccaacc tgaaagattc gggtgtaaac gtggtgattg gtctgcgcca aggttcttct
     3361 tggaaaaaag ccgaagcagc cggtcatgtc gtcaaaaccg ttgctgaagc gaccaaagaa
     3421 gccgatgtcg ttatgctgct gctgcctgac gaaaccatgc ctgccgtcta tcacgccgaa
     3481 gttacagcca atttgaaaga aggcgcaacg ctggcatttg cacacggctt caacgtgcac
     3541 tacaaccaaa tcgttccgcg tgccgacttg gacgtgatta tggttgcccc caaaggtccg
     3601 ggtcataccg tacgcagtga atacaaacgc ggcggcggcg tgccttctct gattgccgtt
     3661 taccaagaca attccggcaa agccaaagac atcgccctgt cttatgcggc tgccaacggc
     3721 ggcaccaaag gcggtgtgat tgaaaccact ttccgcgaag aaaccgaaac cgatctgttt
     3781 ggcgaacaag ccgtattgtg cggcggcgtg gtcgagttga ttaaagcagg ttttgaaacc
     3841 ctgaccgaag ccggttacgc gcctgaaatg gcttacttcg aatgtctgca cgaaatgaaa
     3901 ctgattgttg acctgatttt cgaaggcggt attgccaata tgaactactc catttccaac
     3961 aatgcggagt acggcgaata cgttaccggc cctgaagtgg tcaatgcttc cagcaaagaa
     4021 gccatgcgca atgccctgaa acgcatccaa accggcgaat acgcaaaaat gtttatccaa
     4081 gagggtaatg tcaactatgc gtctatgact gcccgccgcc gtctgaatgc cgaccaccaa
     4141 gttgaaaaag tcggcgcaca actgcgtgcc atgatgcctt ggattactgc caacaaattg
     4201 gttgaccaag acaaaaactg attgttttca aacgggacta cctacacatc gtgtaggcag
     4261 tt
//
LOCUS       DAXHPV010000161         4221 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.161, whole genome shotgun sequence.
ACCESSION   DAXHPV010000161 DAXHPV010000000
VERSION     DAXHPV010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4221)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4221)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4221
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.161"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(245..1108)
                     /gene="rpoH"
                     /locus_tag="ACFM6C_001809"
     CDS             complement(245..1108)
                     /gene="rpoH"
                     /locus_tag="ACFM6C_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HFC6159218.1"
                     /translation="MNNAFALPAIQSGNGSLEQYIHTVNSIPMLSQEEETRLAERRIK
                     GDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARLF
                     SFAVHWIKAEIHEFILRNWRLVRVATTKPQRKLFFNLRSMRKNLNALSPKEAQDIADD
                     LGVKLSEVLEMEQRMTGHDIAIMADNSDDEDSFAPIDWLADHDSEPSRQLSKQAHYAL
                     QTEGLQNALAQLDDRSRRIVESRWLQDDGGLTLHQLAAEYGVSAERIRQIEAKAMQKL
                     RGFLTEEAEAV"
     gene            complement(1372..2910)
                     /gene="lnt"
                     /locus_tag="ACFM6C_001810"
     CDS             complement(1372..2910)
                     /gene="lnt"
                     /locus_tag="ACFM6C_001810"
                     /EC_number="2.3.1.269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HFC6159219.1"
                     /translation="MVSKLDKYWQHPALYWPLLILFAAATPFTFAPYYHFWLMPLIFG
                     AFVRLIELRPRFAVSSAYLFGLTAYTTQFYWIHTALHDVSGLPDLYAVPLTFLLPAYL
                     ALYPALCFWLWKKFTLPRGIKIGLVLPILWTLTEFARERFLTGFGWGAIGYSQITPDS
                     PLAGFAPLGGIHMVTLATAFLGVWLVLASDNTARSGKRLLPIILIAALLAAGYTARQT
                     DFTRPDGSRSTVALLQGNIDQTLKWREDQVIPTIQKYYEQVGKTTADIVILPETAIPV
                     MRQNLPENILAKFAEQAQNNGSALAVGISQYTSDGNGYENAVINLTGYQENNQDGIPY
                     YAKNHLVPFGEYKPLPFLTTPLYKMMNMPLSDFRKGGGKQSALLMKNQKIAFNICYED
                     GFGDELIAAAKDATLLANASNMAWYGKSNAMYQHLQQSQARAMELGRYMVRATNTGAT
                     AIISPKGNIIAQAQPDTETVLEGHIKGYVGETPYMKTGSSWWLMGILTLAALILFIFR
                     NKEH"
     gene            complement(2979..3705)
                     /locus_tag="ACFM6C_001811"
                     /pseudo
     CDS             complement(2979..3705)
                     /locus_tag="ACFM6C_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688345.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 family protein"
     gene            3899..4219
                     /locus_tag="ACFM6C_001812"
     CDS             3899..4219
                     /locus_tag="ACFM6C_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium:proton antiporter"
                     /protein_id="HFC6159220.1"
                     /translation="MDWMGSLFLPGGALLFLSVVSTTLSARLGMPLLLVSPAGVLDGA
                     AEALAIAAFLMLVARPLAVFGGLWKFNYSLREKAYSRIEMQSDTVLQAGIWRGTSCPT
                     ARSI"
BASE COUNT          907 a          962 c         1312 g         1040 t
ORIGIN      
        1 atttgtactg tctgcggctt cgccgccttg tcctgatttt tgttaatcca ctatatcaat
       61 tccgccaatc tgtcggaaaa gcagctgatg cggcagtgtc tggtgcatgt ctgctttttg
      121 atttcggcga ttgcgatggt ttggacggat aaaatcgtgt acggcacgac gcacaaaccg
      181 cattgatgtt taccaaataa aatacccgac aaaacaattt gtcgggtatt ttattgcgta
      241 tatttcaaac cgcttcggct tcttcggtca ggaaaccacg cagtttctgc atggcttttg
      301 cttcgatttg gcggatgcgc tcggcagaga cgccgtattc tgcagcaagc tggtgcagcg
      361 tcagcccgcc gtcgtcttga agccagcggc tttccacaat acggcggctc ctgtcatcca
      421 gttgcgccaa agcgttttgt aaaccttctg tttgcagggc gtaatgcgcc tgtttcgata
      481 gttgtcggct cggttcggaa tcgtggtcgg caagccagtc gatgggggcg aaactgtcct
      541 cgtcgtcgct gttgtctgcc atgatggcga tgtcgtgtcc cgtcatgcgc tgttccattt
      601 ccagaacttc ggaaagtttg acacccaaat cgtcggcgat gtcttgtgcc tctttgggag
      661 acagggcgtt gaggttttta cgcatactgc gtaaattgaa aaacagcttg cgttgcggtt
      721 tggtggtggc aacgcggaca aggcgccagt tcctcaggat gaattcgtga atttccgctt
      781 taatccaatg cacggcaaat gaaaacaggc gtgcacctcg acctggctcg tagcgtttga
      841 ccgccttcat cagtccgata ttgccttcct gaatcaggtc tgcctgattc agcccgtagc
      901 cgtcatagcc gcgcgcgatg gaaacgacga cgcgcaggtg ggacaggatg agttgtttgg
      961 cggcgttgag gtcgcccttt atccggcgtt cggcgaggcg ggtttcttct tcctgggaca
     1021 gcatcgggat gctgttgacg gtgtggatgt attgttcgag gctgccgttg ccgctttgga
     1081 tggcgggtaa tgcgaaagcg ttattcattt ggggcatttc ctttcggctg aaactgcgta
     1141 tcggcggttt gctgtgttgg gatgcagtat atcactgctt ggcttgtatt ttgtatgttt
     1201 ggcaggagat atgcgctaag gtttgaaaga caggaaaatt ttgtaaggca ggtttgattg
     1261 attttgtaaa cctgatggct caattcgatt tcagaattat attacatacg taattgtatg
     1321 taaatagccg ttttgaaaaa agacagcccg tccggacggg ctgtgcaggt atcagtgttc
     1381 tttgtttcgg aagatgaaaa gaatcagtgc ggctagggtc aatatgccca tcaaccacca
     1441 tgaactgccg gttttcatat agggcgtttc gccgacatag cctttgatgt gtccttccaa
     1501 tacggtttcc gtatcgggtt gggcttgggc gatgatgttg cctttggggg agatgatggc
     1561 ggttgcgccg gtgttggtgg cacggaccat atagcgtccg agttccatag cccgcgcctg
     1621 cgattgttgg aggtgctggt acatggcgtt ggattttccg taccacgcca tattgctggc
     1681 attggcaagc agtgtggcat ctttggcggc ggcaatcagt tcgtcgccga atccgtcttc
     1741 gtaacagatg ttgaaggcga ttttttggtt tttcatcagc agggcggatt gcttaccgcc
     1801 gcctttgcgg aagtcggaaa ggggcatatt catcattttg taaagcggcg tggtcaggaa
     1861 gggcagcggt ttgtattcgc cgaaggggac gaggtggttt ttggcgtagt aggggatgcc
     1921 gtcctgattg ttttcctgat aaccggtcag gttgatgacg gcgttttcgt aaccgttgcc
     1981 gtccgaagtg tattggctga tgccgacggc gagcgcgctg ccgttgtttt gcgcctgttc
     2041 ggcaaatttt gccagtatgt tttccggcag gttttggcgc ataacgggga tggcggtttc
     2101 gggcaggatg acgatgtcgg cagtggtttt gccgacctgt tcgtaatatt tctgtatggt
     2161 cgggatgact tggtcttcac gccatttgag ggtttggtcg atgttgcctt gaagcagggc
     2221 gacggtgctg cggctgccgt cggggcgggt gaagtcggtt tgtcgggcgg tgtagcctgc
     2281 ggcaagcagg gcggcaatca ggataattgg aagcaggcgt ttgcccgaac gtgcggtgtt
     2341 atcactcgcc aaaaccagcc agacaccgag aaaggcggtt gccagtgtaa ccatgtggat
     2401 gccgcccaat ggggcaaagc cggcgagcgg gctgtccggg gtgatttggg agtagccgat
     2461 tgcgccccag ccgaatccgg tcaggaaacg ttcgcgggca aactcggtca gtgtccacag
     2521 gatgggcagt accaaaccga tttttatgcc ccgaggcagg gtaaattttt tccacagcca
     2581 gaaacacagt gccggataaa gggcaaggta ggcggggagt aggaaggtca gcggtacggc
     2641 atagaggtcg ggcaggccgg aaacgtcgtg cagggcggtg tgtatccagt agaactgtgt
     2701 cgtgtatgcg gtcaggccga acaggtaggc ggaagagaca gcaaaacgcg gacgcagttc
     2761 gatgaggcgg acgaaggcac cgaaaatcaa gggcatcagc caaaagtggt agtagggtgc
     2821 gaaggtaaag ggggtggcgg cggcaaaaag gatgagcaaa ggccagtaga gggcggggtg
     2881 ctgccagtat ttgtccagtt tggaaaccat attcatctgt ctgttcggaa gataccgtct
     2941 gaacatcttt caaacggcat cggtatttga aaaagaaatc aatgcctgcc gaaacgattc
     3001 atcagcggca aggcgggggc gcaggcaatc gaaccggaaa gcagcccgac aacgaggttg
     3061 gcgaagtact ccgcccagcc agcgtcccag tgttgcgcgt gcaggaaatc gtgcagaagg
     3121 ccgaggttgt gggcgaccag tacgccgccg ataagaaaca tggcaagcgt gccgaccacg
     3181 ctcaaaccgc gcataaagca aggcataaag gcagtcagca tttgccccaa actgcgcgaa
     3241 aaggtttgtg ggcggcgcat cagcagcatg cctaagtcgt cgagtttgac gatgacggca
     3301 acgattccgt acaccaaaac agtcatgccg atgccgattg ccgccattac gagcatgcgc
     3361 gtcatgtcgg tgcagaaact tgtgcagcag cttttctacg ccttcaaagc acagataaat
     3421 gccgcctgcc gtcaaaagcg gcgtaatgag ttgcggcagg aaggcggaaa gcagcagggg
     3481 cgcaggcacc aaaaccggct tgttggaaaa agaacctttc gccatcgacc aaacaatcgg
     3541 caactcgcgt tctgccgata cgcccgtaac ccggttggca ttgggtgtca aatcgtcgcc
     3601 gaccacgccg gcggttttct ttgcggcggc tttggtcatc agggcaacat cgtccaaaac
     3661 ggcggtgatg tcgtccggca gggtaaatag tgaggcaaat gccattaaag aatcctgaaa
     3721 tgcggcgcaa agtccgacat tatataggag aacgcggatt tgggcggttt caggcggcat
     3781 gaaacaggaa aatgccgtct gaaggcggtg gcggacgtga agtaaagttt cgtgaaaaaa
     3841 atgccgtgtt acagtctttc gattttaatt taatgaattt taagggagag tcgttagcgt
     3901 ggattggatg ggcagtctgt tcctgccagg tggcgcactg ttgttcctga gcgtggtttc
     3961 gaccactttg tccgcacgtt tgggaatgcc tttgctgctg gtttctcccg caggcgtgtt
     4021 ggacggggcg gcggaagcct tggcgattgc ggcgtttctg atgctggtcg cgcgtccgct
     4081 ggcagtgttc ggcggtttgt ggaaattcaa ttatagcctg cgtgaaaagg cgtatagccg
     4141 aatagaaatg cagtccgaca ccgtgcttca ggcggggatt tggcgtggta catcctgccc
     4201 gacggcaagg tcgatatagt g
//
LOCUS       DAXHPV010000162         4154 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.162, whole genome shotgun sequence.
ACCESSION   DAXHPV010000162 DAXHPV010000000
VERSION     DAXHPV010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4154)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4154)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4154
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.162"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(20..682)
                     /locus_tag="ACFM6C_001813"
     CDS             complement(20..682)
                     /locus_tag="ACFM6C_001813"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFC6159221.1"
                     /translation="MIHAVLFDLDGTLADTALDLGGALNTLLARHGLPAKSMDEIRTQ
                     ASHGAAGLLKLGTGITPDHPDYARWRTEYLEEYDRRYAQDTELFDGVNELIAELNQRG
                     IKWGIITNKPMRFTDKLVPKLGFIIPPAVVVSGDTCGEPKPSVKPMLYACGQIHADPQ
                     HTLYVGDAERDIQAGRNAGMKTVLAEWGYIAPEDDTGSWQADFHIRTPLDLLECLDKI
                     QS"
     gene            complement(720..1547)
                     /locus_tag="ACFM6C_001814"
     CDS             complement(720..1547)
                     /locus_tag="ACFM6C_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HFC6159222.1"
                     /translation="MKLDIYALLERALLSGDPDEKGRLTDEAFAAVQNADGAEANAPP
                     ADFPRAGRPDKPVLVAPSQLTPRKMNTAEGYAAMLHAIAHIEFNAVNLALDAAYRFRT
                     LPFQFVRDWVKVAKEEVYHFRLMRDRLRAFGFDYGSFEAHNHLWDMAYKTAYDPLLRM
                     ALVPRVLEARGLDVTPGIRAKVAQRGDSETCGVLDIIYRDEVGHVAIGNHWYQHLCRE
                     RGLEPITLFRSLIARYDMFIFRGYVNIEAREKAGFSRFELDMLEDFEQGLKQNKHAV"
     gene            1825..2448
                     /gene="lolA"
                     /locus_tag="ACFM6C_001815"
     CDS             1825..2448
                     /gene="lolA"
                     /locus_tag="ACFM6C_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HFC6159223.1"
                     /translation="MMKPHNLFQFLAVCSLTVAVASAQAGAVDALKQFNNDADGISGS
                     FTQTVQSKKKTQTAHGTFKILRPGLFKWEYTSPYKQTIVGDGQTVWLYDVDLAQVTKS
                     SQDQAIGGSPAAILSNKTALESSYTLKEDGSSNGIDYVLATPKRNNAGYQYIRIGFKG
                     GNLAAMQLKDSFGNQTSISFGGLNTNPQLSRGAFKFTPPKGVDVLSN"
     gene            2721..3860
                     /locus_tag="ACFM6C_001816"
     CDS             2721..3860
                     /locus_tag="ACFM6C_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0019808 - polyamine binding [Evidence
                     IEA];
                     GO_process: GO:0015846 - polyamine transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HFC6159224.1"
                     /translation="MKKTLVAAAILSLALTACGGGSDTAAQAPSAKPEAEQSGKLNIY
                     NWSDYVDPETVAAFEKETGIKTRSDYYDSNETLEAKVLTGKSGYDLTAPSIANVGRQI
                     KAGAYQKIDKAQIPHYGNIDKDLLKMMEAVDPGNEYAVPYFWGINTLAINTGQVQKAL
                     GTDKLPENEWDLVFKPEYTAKLKSCGISYFDSAIEQIPLALHYLGKDPNSENPEDIKA
                     AVDMMKAVRGDVKRFSSSGYIDDMAAGNLCAAIGYGGDLNIAKTRAEEAANGVEIKVL
                     TPKTGVGVWVDSFMIPRDAQNVANAHRYIDYTLLPEVAAKNGSFVTYAPASRPARELM
                     DEKYTSDASIFPNKELMEKSFIVSPKSAESAKLGVKLWQGLKAGK"
     gene            3993..>4154
                     /locus_tag="ACFM6C_001817"
     CDS             3993..>4154
                     /locus_tag="ACFM6C_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFC6159225.1"
                     /translation="MDLSIVVPIYNVESYLEACLSSIEPILSNENVELILVNDGSKDG
                     SEDICYKYID"
BASE COUNT          996 a         1169 c         1125 g          864 t
ORIGIN      
        1 tttgtggggc ggatattttt caggactgta ttttgtccag acattcgagc agatcgagcg
       61 gcgtgcggat gtggaaatcc gcctgccatg agccggtatc gtcttcggga gcgatgtagc
      121 cccattcggc gaggacggtt ttcatgccgg cgttgcggcc tgcttggatg tcgcgttcgg
      181 catcaccgac gtagagtgtg tgttgcgggt cggcgtggat ttgtccgcac gcatacagca
      241 tgggtttgac gctgggcttg ggttcgccgc aggtgtcgcc gctgacgacg acggcgggtg
      301 ggatgatgaa gccgagtttg gggacgagtt tgtcggtgaa gcgcatgggt ttgttggtga
      361 tgatgcccca tttgatgccg cgttggttga gttcggcaat gagttcgttc acgccgtcaa
      421 agagctcggt gtcttgggcg tagcggcggt cgtattcctc cagatattcg gtgcgccatc
      481 gggcatagtc ggggtggtcg ggggtgatgc ctgtgccgag cttgagcagt cctgccgcgc
      541 cgtggctggc ttgggtgcgg atctcgtcca tgctttttgc aggtagtccg tggcgagcga
      601 gcagggtgtt gagtgcgcct ccgaggtcga gggcggtgtc ggcaagtgtg ccgtcgaggt
      661 cgaagagtac ggcgtgtatc atgtgtgttc cttttttata aagtgcggga cgaagggttt
      721 cagacggcat gtttattttg tttcaaaccc tgttcgaaat cttccagcat atccaattca
      781 aagcggctga agcccgcttt ttcgcgcgct tcgatgttca catagccgcg gaagataaac
      841 atatcgtaac gggcaatcag actgcggaac agggtaatcg gttccaaacc gcgttcgcgg
      901 cagaggtgtt gataccaatg gttgccgatg gcgacatgac ccacttcgtc gcggtaaatg
      961 atgtccaata cgccgcaggt ttccgaatcg ccgcgctgcg ccaccttcgc gcgtatcccc
     1021 ggcgtaacgt ccagcccgcg cgcttccaac acgcgcggta ccaacgccat acgcaacagc
     1081 gggtcgtagg cggttttgta cgccatatcc cacaaatggt tgtgcgcctc gaaactgccg
     1141 taatcgaagc cgaaagcgcg caatctgtcg cgcatcaggc ggaaatggta cacctcttcc
     1201 ttcgccactt tcacccagtc gcggacaaac tgaaacggca gcgtgcggaa acggtatgcc
     1261 gcgtccaaag ccagattgac ggcgttgaat tcgatatgcg caatcgcgtg cagcatcgcc
     1321 gcatagcctt ctgccgtgtt cattttgcgt ggcgtcagtt gcgacggcgc gaccaaaaca
     1381 ggcttgtccg gccgtcccgc gcgggggaaa tctgccggtg gcgcgtttgc ttccgccccg
     1441 tccgcatttt gaacggcggc aaacgcctca tccgtcagcc gtcctttttc atctgggtcg
     1501 cccgaaagca gggcgcgttc cagcaaagca taaatatcga gtttcatctc aagtccgccg
     1561 tgttcggaaa acaaatatta tagcgtttta aaaaaacaag atgaggcata taatctccgc
     1621 gattcggcat tccgcgccca aaccgtcaaa tcacgcggca cacaattaaa gggcagcgtg
     1681 gcgcgcctac cttttccgag cggtcaaaaa aatcagccct cggaaaacgc tgtttgtaaa
     1741 atgcaaaccg cccgtaacgc cgcccgtatg attgttttgc cgcgccgata ctttacgcca
     1801 cacccatccc aacaaggaaa aataatgatg aaaccgcaca acctgttcca atttctcgcc
     1861 gtttgctccc tgaccgtcgc cgtcgcttcc gcacaggcgg gcgcggtaga cgcgctcaag
     1921 caattcaaca acgatgccga cggtatcagc ggcagcttca cccaaaccgt ccaaagcaaa
     1981 aagaaaaccc aaaccgcgca cggcacgttc aaaatcctgc gcccgggcct cttcaaatgg
     2041 gaatacactt cgccctacaa acagactatt gtcggcgacg gtcaaaccgt ttggctctac
     2101 gatgtcgatt tggcacaagt gaccaagtcg tcccaagacc aggccatagg cggcagcccc
     2161 gccgccatcc tgtcgaacaa aaccgccctc gaaagcagct acacgctgaa agaggacggt
     2221 tcgtccaacg gcatcgatta tgtgctggca acgcccaaac gcaacaacgc cggctaccaa
     2281 tacatccgca tcggcttcaa aggcggcaac ctcgccgcca tgcagcttaa agacagcttc
     2341 ggcaaccaaa cctccatcag tttcggcggt ttgaatacca atccccaact ctcgcgcggc
     2401 gcgttcaagt ttaccccgcc caaaggcgtg gacgtgttga gcaactgatg ccgtccgccc
     2461 cgatgccgtc tgaaagccgc cgaggcttca gacggcattt tcacgcaggc ggaacaatgt
     2521 cccgcattac cgcccgatcg ggcatcggaa cggcaaaccc gtgaaaatta acggttgcgc
     2581 cccggttgtt tttgccgttt aatgcaaacc ttgctgcatc aagggccaag aaagccgacc
     2641 ggccgccccc acagcttccg atgcaggcgg ccaggccgtc cctgcaatgt tttttatttt
     2701 tgaacgaaag gtcgaaaacc atgaaaaaaa cactggtggc ggcggcaatc ctgagcctcg
     2761 ccttgactgc gtgcggcggc ggaagcgata ccgccgccca agccccctcc gccaagcctg
     2821 aagccgaaca atcgggcaaa ctcaatatct acaactggtc ggattatgtc gatcccgaaa
     2881 ccgtcgccgc ctttgaaaaa gaaaccggca tcaagacgcg ttccgattat tacgacagca
     2941 acgaaacact ggaggcaaaa gtcctgaccg gcaaatccgg ctacgacctg accgcgccgt
     3001 ccatcgccaa cgtcggccgg caaatcaaag cgggcgcgta tcagaaaatc gacaaggcgc
     3061 aaatccccca ttacggcaac atcgataaag atttgctgaa aatgatggaa gccgtcgatc
     3121 cgggcaacga atacgccgtc ccctatttct ggggcatcaa caccttggca atcaacacgg
     3181 ggcaggtgca aaaggcattg ggtacggaca agctgcccga aaacgaatgg gatttggtgt
     3241 tcaaacccga atacaccgcc aaactcaaat cctgcggcat cagctatttc gacagcgcaa
     3301 tcgaacagat tcccttggcg ttgcactatt tgggcaaaga ccccaacagt gagaatcccg
     3361 aagacatcaa agccgccgtc gatatgatga aagccgtccg gggcgacgtg aaacgcttca
     3421 gctcttccgg ctatatcgac gatatggcgg caggcaacct gtgtgccgcc atcggttacg
     3481 gcggcgattt gaacattgcc aaaacccgtg ccgaagaagc cgcaaacggc gtggaaatca
     3541 aagtattgac cccgaaaacc ggcgtgggcg tgtgggtgga ttcctttatg attccgcgcg
     3601 acgcgcaaaa cgttgccaac gcccaccgct atatcgacta cacgctcctg cccgaggtgg
     3661 cggcgaaaaa cggcagcttc gttacctacg cacccgccag ccgccccgcg cgcgagctga
     3721 tggatgaaaa atacacctcc gatgcatcga ttttcccgaa caaagaactg atggaaaaaa
     3781 gtttcatcgt atcgcccaaa tccgcagaat ccgccaaact gggcgtgaag ctgtggcaag
     3841 ggctcaaagc gggcaaataa ccgcaacccc tgccgtctga aacctttcgg gcggcaggaa
     3901 acggcgcgtc cgttatcaaa caggggggcg tttcccctcc tgccggttat gattgggtta
     3961 agattaaaat gatttagtaa aatgagaaag atatggattt aagtatcgta gttcccattt
     4021 ataatgtcga aagttatttg gaagcgtgtt taagttccat agaacctata ttaagtaatg
     4081 aaaatgtcga acttatcctt gtgaatgacg ggtcaaaaga cggaagtgaa gatatatgtt
     4141 ataaatatat agat
//
LOCUS       DAXHPV010000163         4128 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.163, whole genome shotgun sequence.
ACCESSION   DAXHPV010000163 DAXHPV010000000
VERSION     DAXHPV010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4128)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4128)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4128
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.163"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            43..675
                     /locus_tag="ACFM6C_001818"
     CDS             43..675
                     /locus_tag="ACFM6C_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0009691 - cytokinin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HFC6159226.1"
                     /translation="MENTNRVPEQARYDAERRQADEALAGVFPAVSIFGSARTPQNHA
                     DYAFACRLARRLSDSGIAVISGGGPGIMEAANKGAFAGKSVSVGLNIVLPHEQKPNPY
                     QDIALRFSRFAERKAVFFRYSQAYVVMPGGFGTLDELFEILTLVQTGKVPPRPIVLVG
                     KAFWSGLAEWINAQLLARGLISEGAVSLFAISDDEDEIVAYLSEHGLQTA"
     gene            747..2117
                     /gene="purB"
                     /locus_tag="ACFM6C_001819"
     CDS             747..2117
                     /gene="purB"
                     /locus_tag="ACFM6C_001819"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0006188 - IMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HFC6159227.1"
                     /translation="MINPIASLSPLDGRYAQSVEALRPIFSEYGLMKARVKVELNWLK
                     ALAAEPKIAEVPPFSAETLAEIDTVIENFSLEDAAAVKAIEATTNHDVKAIEYWLKKR
                     FAEVPEVAAVSEFIHFACTSEDINNLSHALMLQEAREAVLLPKLAEIIGKLTAMAHDL
                     AAVPMMSRTHGQPATPTTLGKETANVVYRLQRQFKNLQAQEFLGKINGAVGNYNAHMV
                     AYPDVDWETHCRNFVEISLGLTFNPYTIQIEPHDYMAEFFQTLSRINTILIDFNRDVW
                     GYISLGYFKQKVKAGEVGSSTMPHKVNPIDFENSEGNLGMANAVLGFLSEKLPISRWQ
                     RDLTDSTVLRNMGVGVGYAVLGFAAHLRGLNKLEPNPAALAADLDATWELLAEPIQTV
                     MRRYGVANPYEKLKDLTRGKGGITPEVLKGFIESLEIPVEAKAKLLELTPALYVGKAE
                     ALAKRI"
     gene            2198..4066
                     /locus_tag="ACFM6C_001820"
     CDS             2198..4066
                     /locus_tag="ACFM6C_001820"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HFC6159228.1"
                     /translation="MQTVRYRPEIDGLRAVAVLSVIIFHLNDRWLPGGFLGVDIFFVI
                     SGFLITGIILSEIQNGSFSFRDFYTRRIKRIYPAFIAAVSLASVIASQIFLYEDFNQM
                     RKTVELSAVFLSNIYLGFQQGYFDLSADENPVLHIWSLAVEEQYYLLYPLLLIFCCKK
                     TKSLRVLRNISIILFLILTASSFLPSGFYTDILNQPNTYYLSTLRFPELLAGSLLAVY
                     GQTQNGRRQTANGKRQLLSSLCFGALLACLFVIDKHNPFIPGMTLLLPCLLTALLIRS
                     MQYGTLPTRILSASPIVFVGKISYSLYLYHWIFIAFAHYITGDKQLGLPAVSAVAALT
                     AGFSLLSYYLIEQPLRKRKMTFKKAFFCLYLAPSLILVGYNLYARGILKQEHLRPLPG
                     APLAAENHFPETVLTLGDSHAGHLRGFLDYVGSREGWKAKILSLDSECLVWVDEKLAD
                     NPLCRKYRDEVEKAEAVFIAQFYDLRMGGQPVPRFEAQSFLIPGFPARFRETVKRIAA
                     VKPVYVFANNTSISRSPLREEKLKRFAANQYLRPIQAMGDIGKSNQAVFDLIKDIPNV
                     HWVDAQKYLPKNTVEIYGRYLYGDQDHLTYFGSYYMGREFHKHESLLKHSHGNALQ"
BASE COUNT          953 a         1118 c         1053 g         1004 t
ORIGIN      
        1 tttttgacgg tgtacaatcg ctgtttttga acggaggatg gaatggagaa tacaaaccgt
       61 gtgccggagc aggcacgtta tgatgccgaa cgcaggcagg cagacgaagc attggcgggc
      121 gtgtttccgg cagtcagtat cttcggcagc gcgcgcacgc cgcagaatca tgcggattat
      181 gcgttcgcct gccgtctggc gcggcggctg tcggattcgg gcattgccgt catttcgggc
      241 ggcgggccgg ggattatgga ggcggcaaac aagggcgcgt ttgcagggaa gtcggtttcg
      301 gtggggctga acatcgtttt gccgcacgag cagaaaccga atccgtatca ggacatcgcc
      361 ttgcggtttt cccgttttgc cgaacgcaag gcggtgtttt tccgctattc ccaagcatat
      421 gtcgtgatgc cgggcggctt cgggacgctg gacgaattgt ttgaaatcct gaccttggtg
      481 cagacgggca aagtgccgcc gcgtccgatt gttttggtcg gaaaggcgtt ttggtcgggc
      541 ttggcggagt ggataaacgc gcagcttttg gcgcgcggtc tgatttccga aggggcggtc
      601 tctttgtttg ccatatcgga cgatgaagac gaaatcgttg cgtatctgtc ggaacacggg
      661 cttcagacgg catagcgtcc tgagagtgat gtataattgc aaacaattta acaatttttg
      721 atgtctttcc cgaacaggat gccgaaatga tcaaccccat cgcctcgctt tcccctttag
      781 atggccgtta tgcccaatcc gttgaagcat tgcgcccgat tttttccgaa tacggcctga
      841 tgaaagcgcg cgtcaaagtc gaattaaact ggctcaaagc cctcgccgcc gagccgaaga
      901 ttgccgaagt gccgcccttc agtgccgaaa cgcttgccga aatcgacacg gtgattgaaa
      961 acttttcatt ggaagacgcg gccgccgtca aagccatcga agccaccacc aatcacgatg
     1021 tcaaagccat cgaatattgg ctgaaaaaac gttttgccga agtgcccgaa gtcgccgccg
     1081 tgagtgagtt catccacttc gcctgcacca gcgaagacat caacaacctg tcccacgctt
     1141 taatgctgca agaagcgcgt gaggctgttt tgctgcccaa actggcagaa atcatcggca
     1201 aactcaccgc tatggcgcac gaccttgccg ccgtcccgat gatgagccgc acccacggcc
     1261 agcccgccac gccgaccact ttgggcaaag aaaccgccaa tgtcgtgtac cgcctgcaac
     1321 gccagtttaa aaacctgcaa gcgcaagagt tcctcggcaa aatcaacggc gcggtcggca
     1381 actacaacgc ccatatggtc gcctatcctg atgtagattg ggaaacccac tgccgcaact
     1441 tcgtcgaaat cagcctcggt ctgaccttca acccctacac catccaaatc gaaccgcacg
     1501 actatatggc ggaattcttc caaaccctca gccgcatcaa cacgattctc atcgacttta
     1561 accgcgacgt ttggggttat atttcattgg gttacttcaa acaaaaagtc aaagcaggcg
     1621 aagtcggttc ttccaccatg ccgcacaaag tcaaccccat cgactttgaa aactccgagg
     1681 gcaacctcgg tatggcaaac gccgtattgg gctttttgtc cgaaaaactg ccgatttccc
     1741 gctggcagcg cgacctgacc gacagcaccg tattgcgcaa tatgggcgta ggcgtgggct
     1801 atgccgtatt gggtttcgcc gcccacctgc gcggtctgaa caagctcgaa cccaaccccg
     1861 ccgcgcttgc cgccgatttg gatgccactt gggagctgct cgccgagccg attcaaaccg
     1921 taatgcgccg ttacggtgtc gccaatcctt acgaaaaact gaaagacctg acgcgcggca
     1981 aaggcggcat cacgcccgaa gtgctgaaag gctttatcga atcgttggaa attccggtag
     2041 aagccaaagc aaaattgctt gagctgactc ctgcactgta tgtgggcaag gctgaagcgt
     2101 tggcgaaacg gatttgagcg tttactgaaa ccgatgccgt ctgaacgcgc gttcagacgg
     2161 catttttaag ataacgggac atacgggggc gatattgatg caaactgtcc gatacaggcc
     2221 tgaaattgac ggattacggg ctgtcgccgt gctatccgtc attattttcc acctgaatga
     2281 ccgctggctg cccggaggat tcctgggggt ggacattttc tttgtcatct caggattcct
     2341 cattaccggc atcattcttt ctgaaataca gaacggttct ttttctttcc gggattttta
     2401 tacccgcagg attaagcgga tttatcctgc ttttattgcg gccgtgtcgc tggcttcggt
     2461 gattgcctct caaatcttcc tttacgaaga tttcaaccaa atgcggaaaa ccgtggagct
     2521 ttctgcggtt ttcttgtcca atatttatct ggggtttcag caggggtatt tcgatttgag
     2581 tgccgacgag aaccccgtac tgcatatctg gtctttggca gtagaggaac agtattacct
     2641 cctgtatcct cttttgctga tattttgctg caaaaaaaca aaatcgctac gggtgctgcg
     2701 taacatcagc atcatcctat ttctgatttt gactgcctca tcgtttttgc caagcgggtt
     2761 ttataccgat attctcaacc aacccaatac ttattacctt tcgacactga ggtttcccga
     2821 gctgttggca ggttcgctgc tggcggttta cgggcaaacg caaaacggca gacggcaaac
     2881 agcaaatgga aaacggcagt tgctttcatc actctgcttc ggcgcattgc ttgcctgcct
     2941 gttcgtgatt gacaaacaca atccgtttat cccgggaatg accctgctcc ttccctgcct
     3001 gctgacggca ctgcttatcc ggagtatgca atacgggaca cttccgaccc gcatcctgtc
     3061 ggcaagcccc atcgtatttg tcggcaaaat ctcttattcc ctatacctgt accattggat
     3121 ttttattgcc ttcgcccatt acattacagg cgacaaacag ctcggactgc ctgccgtatc
     3181 ggcggttgcc gcgttgacgg ccggattttc cctgttgagt tattatttga ttgaacagcc
     3241 gcttagaaaa cggaagatga ccttcaaaaa ggcatttttc tgcctctatc tcgccccgtc
     3301 cctgatactt gtcggttaca acctgtacgc aagggggata ttgaaacagg aacacctccg
     3361 cccgttgccc ggcgcgcccc ttgctgcaga aaatcatttt ccggaaaccg tcctgaccct
     3421 cggcgactcg cacgccggac acctgcgggg ttttctggat tatgtcggca gccgggaagg
     3481 gtggaaagcc aaaatcctgt ccctcgattc ggagtgtttg gtttgggtag atgagaagct
     3541 ggcagacaac ccgttatgtc gaaaataccg ggatgaagtt gaaaaagccg aagccgtttt
     3601 cattgcccaa ttctatgatt tgaggatggg cggccagccc gtgccgagat ttgaagcgca
     3661 atccttccta atacccgggt tcccagcccg attcagggaa accgtcaaaa ggatagccgc
     3721 cgtcaaaccc gtctatgttt ttgcaaacaa cacatcaatc agccgttcgc ccctgaggga
     3781 ggaaaaattg aaaagatttg ccgcaaacca atatctccgc cccattcagg ctatgggcga
     3841 catcggcaag agcaatcagg cggtctttga tttgattaaa gatattccca atgtgcattg
     3901 ggtggacgca caaaaatacc tgcccaaaaa cacggtcgaa atatacggcc gctatcttta
     3961 cggcgaccaa gaccacctga cctatttcgg ttcttattat atggggcggg aatttcacaa
     4021 acatgaaagc ttgctcaagc attcacacgg caacgcattg cagtagcctg ccttcttgtc
     4081 ggatattgcc tttggcagcc tatgccgctg tttgcccttc ggggcggc
//
LOCUS       DAXHPV010000164         4127 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.164, whole genome shotgun sequence.
ACCESSION   DAXHPV010000164 DAXHPV010000000
VERSION     DAXHPV010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4127)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4127)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4127
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.164"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(179..1429)
                     /gene="glyA"
                     /locus_tag="ACFM6C_001821"
     CDS             complement(179..1429)
                     /gene="glyA"
                     /locus_tag="ACFM6C_001821"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HFC6159229.1"
                     /translation="MFSKSVTLAQYDPDLAAAIAQEDQRQQDHVELIASENYVSCAVM
                     DAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRVKKLFGAQYANVQPHSGSQAN
                     QAVYASVLKPGDTILGMSLAHGGHLTHGASVNISGKLYNAVTYGLDENEVLDYAEVER
                     LALEHKPKMIVAGASAYALQIDWAKFREIADKVGAYLFVDMAHYAGLIAGGEYPNPVP
                     FCDFVTTTTHKTLRGPRGGVILCRDNTHEKALNSSIFPSLQGGPLMHVIAAKAVAFKE
                     ALQPEFKQYAKQVKINAAAMAEELVKRGLRIVSGRTESHVFLVDLQPMKITGKAAEAA
                     LGKAHITVNKNAIPNDPEKPFVTSGIRIGSAAMTTRGFNEADARVLANLVADVLSNPE
                     DEANLAKVREQVTALCNKYPVYGA"
     gene            complement(1495..1707)
                     /locus_tag="ACFM6C_001822"
     CDS             complement(1495..1707)
                     /locus_tag="ACFM6C_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159230.1"
                     /translation="MADKDVVGAGYLIDFAQTAENLPFNVLLLISLVLNKGDETLKTS
                     MLNKLPMLNKLPDNAKENLRIMGYLP"
     gene            complement(1928..3703)
                     /gene="ggt"
                     /locus_tag="ACFM6C_001823"
     CDS             complement(1928..3703)
                     /gene="ggt"
                     /locus_tag="ACFM6C_001823"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036374 - glutathione hydrolase activity
                     [Evidence IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006751 - glutathione catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HFC6159231.1"
                     /translation="MAKTYLLTALIMSMTISGCQVIHANQGKVNTHSAVITGADAHTP
                     EHATGLTEQKQVIASDFMVASANPLATQAGYDILKQGGSAADAMVAVQTTLSLVEPQS
                     SGLGGGAFVLYWDNTAKTLTTFDGRETAPMRATPELFLDKDGQPLKFMEAVVGGRSVG
                     TPAIPKLMETIHQRYGVLPWGKLFDTPIRLAKQGFEVSPRLAISVEQNQQHLARYPKT
                     AAYFLPNGVPLQAGSLLKNLEFADSVQALAAQGAKVLHAGKYAQNIVSVVQNAKDNPG
                     QLSLQDLSDYQVVERPPVCVTYRIYEVCGMGAPSSGGIAVGQILGILNEFSPNQVGYD
                     AEGLRLLGDASRLAFADRDVYLGDPDFVPVPIRQLISKDYLKHRSQLLEQSDKALPSV
                     SAGDFIHEWVSSQAIELPSTSHISIVDKAGNVLSMTTSIENAFGSTLMANGYLLNNEL
                     TDFSFEPIKQGKQVANRVEPGKRPRSSMAPTIVFKAGKPYMAIGSPGGSRIIGYVAKT
                     IVAHSDWNMDIQDAISAPNLLNRFGNYELETGTTAVQWQQALNDLGYKTDVRELNSGV
                     QAIIIEPSRLVGGADPRREGRVMGD"
     gene            complement(3911..>4127)
                     /locus_tag="ACFM6C_001824"
     CDS             complement(3911..>4127)
                     /locus_tag="ACFM6C_001824"
                     /inference="COORDINATES: protein motif:HMM:NF012675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glutaredoxin domain-containing protein"
                     /protein_id="HFC6159232.1"
                     /translation="RHAPVSPMWIFSACSRGADPIGRPFAFVNILENPEIRSTLPLIA
                     NRPTFPQLWVNGELIGGSDIITNVPIR"
BASE COUNT         1037 a          968 c          971 g         1151 t
ORIGIN      
        1 gatatgtttg gcaatcatgg cttgcgcggt ttgccggaag aaggtgctca tggaaaatcc
       61 cctaaatgtc ttggtgggaa tttaggggat tttggggaat tttgcaaagg tttccgcctg
      121 aaacattatg agatttcagg cggcattgga ttgcttagcg gaatattttt aaaaaggctt
      181 acgcgccgta aacggggtat ttattgcaca aagcagttac ttgttcgcgg actttggcga
      241 ggttggcttc gtcttcgggg ttagacaata cgtcggcaac caagttcgcc aatacgcgcg
      301 cgtcggcttc gttaaaaccg cgtgtggtca tggcggcgga accgatgcgg atgccggagg
      361 taacgaaggg tttttccgga tcattcggga tggcgttttt gttgacagtg atgtgcgctt
      421 tgcccaaagc ggcttcggcg gctttgccgg taattttcat cggttgcagg tcgacgagga
      481 aaacgtggct ttcggtgcgg ccggaaacga tgcgcaaacc gcgtttgacc agttcttccg
      541 ccatggcggc agcattgatt ttcacttgtt ttgcgtattg tttgaactcg ggttgcaacg
      601 cttctttaaa cgctacggct ttggcggcga tgacgtgcat cagcggaccg ccttgcaggc
      661 tcgggaagat ggaagagttc agtgcttttt cgtgtgtgtt gtcgcggcac agaatcacgc
      721 cgccgcgagg gccgcgtagg gttttgtggg tggtggtggt cacgaagtcg cagaatggca
      781 cggggttggg atattcgcca ccggcaatca gtccggcata gtgcgccata tcgacaaaga
      841 ggtatgcgcc gactttatcg gcgatttcgc ggaattttgc ccagtcgatt tgcaacgcgt
      901 aggcagacgc acccgccaca atcattttgg gtttgtgttc gagcgcgagg cgttcgactt
      961 cggcataatc gagcacttcg ttttcatcca aaccataagt aacagcgttg tagagtttgc
     1021 ctgagatatt aacgctcgcg ccgtgggtca ggtggccgcc gtgcgccaga gacataccca
     1081 aaatggtgtc gcctggtttt aaaacggaag cgtacacggc ttggttggct tgcgagccgg
     1141 agtgcggttg gacgttggcg tattgcgcgc cgaacagttt tttgacgcgg tcaatcgcca
     1201 attgttcgac aatatcgacg tattcgcagc cgccgtagta gcgtttgcca ggatagcctt
     1261 cggcgtattt gttggtcaat tgcgaacctt gcgcgtccat tacggcgcag ctaacgtagt
     1321 tttcggaagc aatcagctcg acgtggtctt gctggcgttg gtcttcttgg gcaatggctg
     1381 ctgccaaatc ggggtcgtat tgtgcgaggg taacgctttt tgaaaacatg ttctcggctc
     1441 ctttgtgtaa tcagggtatc atgagtgttt tttgtataaa aaatacttca atacctaagg
     1501 tagatagccc ataatgcgta aattttcttt ggcattatca ggtaatttat ttaacatggg
     1561 taatttattt aacatgctgg tttttagcgt ctcatcacct ttatttagta caagactaat
     1621 caaaagcaat acattaaatg gtaaattttc ggcagtttgt gcaaaatcaa tcaaataacc
     1681 agcaccaacc acatctttat cagccataac ccgctgatac accacttgct aagacaactc
     1741 tcctgcccca ccatgtctta aaatcagatg aatggcttgt aatgctgtgt ttggtgtctc
     1801 acaaattgcc aaaatctgat cagaagcttg cttgatggct tgtatttttg tttgattact
     1861 cacaatttcc ccctatttta ataattaact taaatgcggt caaattcaca aaatacaagc
     1921 ttcacctcta atcacccatc actcgacctt ctcggcgtgg atcggcacca ccaaccagcc
     1981 tgcttggctc gataataatg gcttgaacac ctgaatttag ctcacgcaca tcagtcttat
     2041 agcccaaatc atttaatgct tgttgccact ggacggcggt tgtacccgtt tctagttcat
     2101 agttaccaaa gcgatttaat aaattgggtg cactgatggc atcttggata tccatattcc
     2161 agtcactatg tgccacaatc gtcttagcga catagccaat gatacggcta ccacctgggg
     2221 agccgattgc catataaggc ttgcctgctt taaatacgat ggttggtgcc attgaggagc
     2281 gtggtctctt gccgggctcg acacgattgg cgacctgttt gccctgcttt attggctcaa
     2341 aactaaagtc tgtcagctca ttattcagca ggtagccatt tgccatcaaa gttgagccaa
     2401 acgcattttc aatggaagtc gtcattgata gcacattgcc cgccttatcc acaattgata
     2461 tatgactggt agaaggtaac tcaatcgctt gtgaggacac ccactcatga ataaaatcgc
     2521 ctgcagatac gctaggcaat gccttatccg actgctcaag cagctggctg cgatgtttta
     2581 ggtagtcttt agaaatcaac tggcgaatgg gtactggtac aaaatcaggg tcgcccaaat
     2641 atacatcacg atccgcaaac gcaagcctag aagcgtcgcc caagagacgt aaaccttcag
     2701 catcataccc cacctgattg ggtgaaaatt catttaaaat ccccaaaatc tgacccacag
     2761 caatcccacc tgagcttggt gcacccatac cgcatacttc ataaatacga taagtcacac
     2821 aaacaggcgg gcgttccacc acttgataat cagataaatc ttgtaaggat aattgaccgg
     2881 ggttatcctt agcattttgg acaactgaaa cgatattttg ggcatattta ccagcatgca
     2941 gaacttttgc accttgagct gctaacgcct gaacactgtc agcaaattct aaatttttca
     3001 gcaagctgcc tgcttgtagc ggcacaccat tcggcaaaaa ataagcggct gtttttggat
     3061 agcgtgccaa atgctgctga ttttgctcaa ccgagatggc aagccttggc gacacctcaa
     3121 agccttgttt tgccaagcgg atcggcgtat caaataattt tccccaaggc aatacaccgt
     3181 atcgctgatg tattgtctcc atcagtttag ggatagcagg cgtacccacc gagcgaccac
     3241 cgaccaccgc ttccataaat ttcaatggtt gaccatcttt atccaaaaat aattccggcg
     3301 tcgcacgcat cggtgccgtc tcacgcccat caaatgtggt caatgttttg gcggtattat
     3361 cccaatacaa cacaaatgca ccaccgccca agcctgacga ctgtggctct accaagctta
     3421 gtgtcgtctg caccgccacc atcgcatctg cagcgctacc gccttgcttt aagatatcat
     3481 agccagcttg tgttgctaat ggattggctg acgctaccat aaaatcactt gcaatcacct
     3541 gcttttgttc ggtcagtccc gttgcatgtt caggcgtgtg agcgtctgca cctgtaatga
     3601 cagcagaatg agtattaacc ttaccttgat tggcatggat gacttgacat ccagagattg
     3661 tcatagacat tatcaatgca gtcaataaat atgttttagc cacaagcact ccttcgcctg
     3721 agtttgattg atgattcata caaggcatgc tgattattgt atttaatatg actaaataat
     3781 tcaatccaaa ctatcaatct tgaccatcaa aaaaagaccg ctaatgtcat cagcagtctt
     3841 ttttgatatt tattttaaga tattaagtaa tcagaccttt gggctatgct cttcaatgag
     3901 tggttttagc tcacctgatt ggtacatttg tgataatatc actaccaccg attaactcac
     3961 cattaaccca aagctgtgga aaggttggcc gattggcgat gagtggtaga gtactgcgaa
     4021 tttctgggtt ttctaggata ttaacaaaag caaagggtct gccaattggg tcagcacctc
     4081 tactgcacgc gctgaaaatc cacattgggg aaactggggc gtgcctt
//
LOCUS       DAXHPV010000165         4033 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.165, whole genome shotgun sequence.
ACCESSION   DAXHPV010000165 DAXHPV010000000
VERSION     DAXHPV010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4033)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4033)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4033
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.165"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(88..906)
                     /locus_tag="ACFM6C_001825"
     CDS             complement(88..906)
                     /locus_tag="ACFM6C_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HFC6159233.1"
                     /translation="MKGMDKLRYQQDFLNIRPIFTAGEQEYLTELSDRLPLSVLTDSV
                     RNIEEIGIDFVYSSAKLEGNTYNQYDTQALLKLGQTAGGKLYSDAVMLINLRESYRHL
                     LSGLDSPEPFDWLDFLKTTHSLISENLLEKGSGGVVRRDSVTISGTDYTPLSNPQSLD
                     TELKWLLQEAPKIENPFDRAVYLHNNLAYLQYFKDCNKRTARNCMTLSLMRSGFFPCV
                     FSPDSYPAYAEAVVAYYETGDYGLFKKYFISAYENTVNKYGPQPDMDISRNFSL"
     gene            complement(986..2236)
                     /locus_tag="ACFM6C_001826"
     CDS             complement(986..2236)
                     /locus_tag="ACFM6C_001826"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HFC6159234.1"
                     /translation="MTKLTRRQIIRRTAGTLFALSPIASAVAKTVRAPQFTAVRIWPS
                     HTYTRLTLESTTALKYQHFTLDNPGRLVVDIQNANINTVLHGLSQKVMADDPFIRSIR
                     AGQNTPTTVRLVIDLKQPSYAQVFSLPPVGGFKNRLVVDLYPQGMDPDDPMMALLNGS
                     LNKTRRGSPEADLAQNTPAQTERGKNGRRPVIMIDPGHGGEDPGAVSPGGLQEKHVVL
                     SIARETKKQLEALGYNVFMTRNEDVFIPLGVRVAKGRARRADVFVSIHADAFTSPSAR
                     GTGVYMLNTKGATSSAAKFLEQTQNNADAVGGVPTSGNRNVDTALLDMTQTATLRDSR
                     KLGKLVLEELGRLNHLHKGRVDEANFAVLRAPDMPSILVETAFLSNPAEEKLLGSESF
                     RRQCAQSIASGVQRYINTSVLKRG"
     gene            complement(2233..2694)
                     /gene="tsaE"
                     /locus_tag="ACFM6C_001827"
     CDS             complement(2233..2694)
                     /gene="tsaE"
                     /locus_tag="ACFM6C_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HFC6159235.1"
                     /translation="MFDFPPVSRFLADEAATLDLGAAWSSRLNAPLVIYLEGDLGAGK
                     TTLTRGILRGLGHQGAVKSPTYAIVESYPLKRFTLHHFDLYRFSFPEEWEDAGLDELF
                     AANSVCLIEWPQQGGEFTPPADITATLTHDGGGRKCLLTAHTERGRESLPL"
     gene            2881..3693
                     /gene="murI"
                     /locus_tag="ACFM6C_001828"
     CDS             2881..3693
                     /gene="murI"
                     /locus_tag="ACFM6C_001828"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HFC6159236.1"
                     /translation="MENIGRQRPIGVFDSGIGGLTNVRALMERLPMENIIYFGDTARV
                     PYGTKSKATIENFSMQIVDFLLEHDVKAMVIACNTIAAVAGQKIRQKTGNMPVLDVIS
                     AGAKAALATTRNNKIGIIATNTTVNSNAYARAIHRSNPDTLVRTQAAPLLVPLVEEGW
                     LEHEVTRLTVCEYLKPLLADGIDTLVLGCTHFPLLKPLIGREAGNVALVDSAITTAEE
                     TARVLAQEGLLNTDNNNPDYRFYVSDIPLKFRTIGERFLGRTMEQIEMVSLG"
BASE COUNT          905 a          989 c         1181 g          958 t
ORIGIN      
        1 cactataacc gaaggtaagg gaggggtgtg tccactgtgc cgccgcattt gccgcgtgcg
       61 gaagatacgg ataacaaccc cttggaatta aagggagaag ttgcgggaaa tatccatatc
      121 aggctgtggg ccgtacttat ttacggtatt ttcgtatgcc gaaataaaat atttcttgaa
      181 taaaccgtaa tcgccggttt cgtaataggc tacgacagcc tcggcatagg cgggataact
      241 gtcgggggag aatacgcaag gaaaaaaacc ggagcgcatc agcgacaagg tcatgcagtt
      301 tctggcagta cgtttattgc aatctttaaa atattgaaga tacgccaaat tattatggag
      361 ataaacggcg cggtcgaaag gattttctat tttgggagct tcttgaagca accattttaa
      421 ttccgtatcc aaactttgcg ggttagataa aggggtgtag tctgtcccgc ttatggtaac
      481 gctgtcgcgg cggactacgc cgccggagcc tttttccagt aagttttcgg aaatcaggct
      541 gtgggtggtt tttaagaaat ccaaccagtc aaacggctcg gggctgtcca aaccggacag
      601 caggtgccgg taactttccc tcaggttgat taacattacg gcatccgaat ataacttccc
      661 gcctgcggtt tgcccgagtt taagcaatgc ctgcgtatcg tattgattat aagtgtttcc
      721 ttccaatttg gcagaactgt acacaaaatc gataccgatt tcttcaatat tacgcacgga
      781 gtccgttaaa acagataaag gaagccgatc ggacaattcg gtcaggtatt cttgttcgcc
      841 ggctgtaaaa atggggcgga tatttaaaaa atcctgttgg tatctcaatt tatccatacc
      901 tttcatcata aaaacgcggt ttggggcgga agtaggttta tgcctgcctt catccgacaa
      961 ctatattgaa acaccgcctt ttcaatcaac cccgcttcaa tacggatgta ttgatgtagc
     1021 gttggacacc cgaggcaatg gattgggcgc actgccgacg gaaggattcg ctgcccagca
     1081 gcttctcttc ggcagggttg gacaggaagg cggtttcgac caggatagac ggcatatcgg
     1141 gcgcgcgcaa aacggcgaaa ttggcttcgt ccaccctgcc tttgtgcaga tggttgagcc
     1201 tgcccaattc ttcaagcacc agtttgccga gtttgcggct gtcgcgcagc gtggcggttt
     1261 gggtcatatc gagcagggcg gtatcgacat tgcggttgcc gctggtcggt acgccgccga
     1321 ccgcgtcggc attattttgg gtttgttcca agaatttggc ggcggagctg gtcgcgcctt
     1381 tggtgttcag catataaacc cctgtgccgc gcgcggaggg gctggtgaaa gcgtcggcgt
     1441 ggatggagac gaatacgtcc gcccgccgtg ctcgcccttt ggcgacacgc acgcccaatg
     1501 ggatgaacac gtcttcgttg cgcgtcataa agacgttgta acccaaggct tccaattgtt
     1561 ttttggtttc gcgggcgatg gagaggacga cgtgtttttc ctgcaaaccg cccgggctga
     1621 cggcgccggg gtcttcgccg ccgtgtccgg ggtcgatcat aatgacgggt ctgcgcccgt
     1681 ttttgccgcg ttcggtttgt gcgggagtgt tttgagcgag gtcggcttca ggggagccgc
     1741 gacgggtttt gttcaggctg ccgttaagca gcgccatcat cggatcgtcg ggatccatcc
     1801 cttgcggata gagatcgacg acgaggcggt ttttaaagcc gccgacgggg gggagggaaa
     1861 aaacttgcgc gtaggaaggc tgtttcaaat cgatgacgag gcggacggtg gtcggcgtgt
     1921 tctgacccgc gcgtatgctg cggataaaag ggtcgtccgc cataaccttc tgagacagtc
     1981 cgtgcaatac ggtattgatg ttcgcgtttt gtatgtcgac gaccaacctg cccgggttgt
     2041 cgagcgtgaa gtgttggtat ttgagcgcgg ttgtgctttc cagcgtcagg cgggtgtagg
     2101 tgtgcgacgg ccatatccgt acggcggtaa actgcggggc gcgtaccgtt ttggcaacgg
     2161 cggatgcgat ggggcttagg gcgaacagtg tgccggcggt gcggcggatg atttgtcttc
     2221 gtgtcagttt ggtcatagcg gcaggctttc gcgtcctcgt tcggtatggg cggtcagcag
     2281 gcattttctg ccgccgccgt cgtgtgtcaa tgttgcggtg atgtcggcgg gcggcgtaaa
     2341 ttccccgccc tgttgcggcc attcgatcag gcagacgctg tttgcggcaa acagttcgtc
     2401 aagccccgca tcttcccatt cttcggggaa cgagaagcgg tagaggtcga aatggtgcaa
     2461 ggtgaagcgt ttcagcggat aagattcgac gatggcgtaa gtcgggcttt tgactgcgcc
     2521 ctgatgaccc aatccgcgca ggatgccgcg tgtcagcgtg gttttccccg cacccaaatc
     2581 cccttcgagg taaatgacca gcggtgcgtt taaacgggaa gaccacgccg cgcccaaatc
     2641 gagtgtggcg gcttcgtcgg caaggaatcg ggaaacgggg ggaaaatcaa acataggggc
     2701 tttacaactt ttatgtggcg gatcggaggg gcaggcggcc ggaaaaccgt gcgcccggcg
     2761 gcattgccgt acattataac agccaaatcc gcatcctgct ttcagacggc aacggctgtc
     2821 aagaaaaagc ggcacgtgta caatacgcag attgtatgtt taggacggat tggaaaaagg
     2881 atggaaaata tcggcaggca gcgacccatc ggcgtttttg actcgggaat cggcggtttg
     2941 accaatgtgc gcgcgctgat ggagcggctg ccgatggaga acatcattta tttcggcgac
     3001 acggcgcgcg tgccttacgg gacgaaatct aaggcgacca tcgaaaattt ctcgatgcag
     3061 attgtcgatt ttttattgga acacgatgtt aaggcgatgg ttatcgcgtg caacacgatt
     3121 gcagcggtgg cggggcagaa aatccgtcaa aagacgggca atatgcctgt gttggacgtg
     3181 atttccgccg gcgcgaaagc cgcgctggca acgacgcgca acaataaaat cggcattatc
     3241 gccaccaata cgacagtcaa cagcaatgcc tatgcgcgcg ccatccacag gagcaaccct
     3301 gatacgctcg tccgcacgca ggctgcgccg ctgcttgtcc ctttggtgga agagggctgg
     3361 ctggaacacg aagttacccg cctgaccgta tgcgaatacc tcaaaccatt gcttgcagac
     3421 ggcatcgata cgctggtgtt gggctgcacg cactttccct tgctcaaacc cttaatcggc
     3481 agggaggcgg gcaatgtcgc gctggtcgat tccgcgatta cgactgccga agaaaccgca
     3541 cgcgtccttg cgcaggaagg attgctcaat accgacaaca acaatcccga ctaccgtttt
     3601 tacgtcagcg atattccttt gaaattcaga accatcggcg agcgttttct gggcaggacg
     3661 atggagcaga ttgaaatggt gtctttgggt taaaacgatg acggaaagct gcccgagatt
     3721 acagaaacct aaaatcccgt cattcccacg aaagtgggaa tctagacctg tcggtgcgga
     3781 aacttatcgg ataaaacggt ttctttagat tttacgttct agattcccgc tttcgcggga
     3841 atgacgggat gcaggtttct gtgcagatgt attcggattc cctcctgcgc gggaatgatg
     3901 ggatttttaa atgtccgaat gccgcaaatg ccgtctgaaa ggcttcagat ggcatttttt
     3961 acacaatccc caccattttc catcattccc aacaacaccg taatctcgaa acccgtcatt
     4021 cccgcgcagg cgg
//
LOCUS       DAXHPV010000166         3872 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.166, whole genome shotgun sequence.
ACCESSION   DAXHPV010000166 DAXHPV010000000
VERSION     DAXHPV010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3872)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3872)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3872
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.166"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            490..1446
                     /gene="thiL"
                     /locus_tag="ACFM6C_001829"
     CDS             490..1446
                     /gene="thiL"
                     /locus_tag="ACFM6C_001829"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009030 - thiamine-phosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HFC6159237.1"
                     /translation="MKEFDFIKRYLQTGTDKDVVLGIGDDAAIVRPREGFDLCFSADM
                     LLKDRHFFADVKPEDLAWKVLAVNISDMAAMGAIPRWVLLSAALPELDEVWLKRFCGS
                     FFGLAKKFGVTLIGGDTTKGDMAFNVTIIGELPKGRALRRDAAVAGDDIWVSGRVGMA
                     AAALNCRLKRCVLPDDVFAECEQKLLRPEPRVGLGLALLPFARAAQDVSDGLAQDLGH
                     ILTASGVGAEIWADSLPSLSVLKDILPRAQWLSYTLAGGDDYELVFTAPESCRSRVLD
                     AAERCGVPVTRIGKINGGCRLKVLDADGRELELHSLGFDHFG"
     gene            1439..1924
                     /locus_tag="ACFM6C_001830"
     CDS             1439..1924
                     /locus_tag="ACFM6C_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HFC6159238.1"
                     /translation="MADFKPDFAWLLKRPLCFLAFGFGSGLAPFAPGTFGTLAALPLA
                     FVLILLGIDGLLLAFLCIVLFMWGIRICAYAERETGVSDHGGIVWDEIVAMLFVLAFV
                     PFRWTWWLAAFVLFRLFDALKPSPVGWFDKNLHGGLGIMADDMAAAVMTLIVLRIAML
                     F"
     gene            complement(1984..3660)
                     /gene="ettA"
                     /locus_tag="ACFM6C_001831"
     CDS             complement(1984..3660)
                     /gene="ettA"
                     /locus_tag="ACFM6C_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0045900 - negative regulation of
                     translational elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HFC6159239.1"
                     /translation="MSQQYVYSMLRVSKVVPPQKTIIKDISLSFFPGAKIGLLGLNGA
                     GKSTVLRIMAGVDKEFEGEAVPMGGIKIGYLPQEPELDPEKTVREEVESGLGEVAAAQ
                     KRLEEVYAEYANPDADFDALAEEQGRLEAIIAAGSSTGGGAEHELEIAADALRLPEWD
                     AKIGNLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDAESVEWLEQFLVRFPGTVVAV
                     THDRYFLDNAAEWILELDRGYGIPWKGNYSSWLEQKEKRLENEAKSEAARVKAMKQEL
                     EWVRQNAKGRQAKSKARLARFEEMSNYEYQKRNETQEIFIPVAERLGNEVIEFVNVSK
                     SFGDKVLIDGLSFKVPAGAIVGIIGPNGAGKSTLFKMISGKEQPDSGEVKIGQTVKMS
                     LIDQSREGLQNDKTVFDNIAEGRDILQVGQFEIPARQYLGRFNFKGSDQSKIAGQLSG
                     GERGRLHLAKTLLGGGNVLLLDEPSNDLDVETLRALEDALLEFAGSVMVISHDRWFLD
                     RIATHILACESDSKWVFFDGNYQEYEADKKRRLGEEGAKPKRIKYKPVTR"
BASE COUNT          796 a          944 c         1075 g         1057 t
ORIGIN      
        1 gaggcaacgc tgtactggtt taaatttaat ccactatatc ggttgaaact ctgattttaa
       61 ggcggtagga tgtgggtttg cccatagaaa gggaatcctt tctgtatcaa gccctgaaag
      121 ggataattca tacaaattca cgcctttccc cctcattggg aaatggatgg aatcgtgcca
      181 gatgtgtgcg gcactgtatg ccggatatgg ttttatcatc agcccttttc ggttgaaacc
      241 tcgccagttg cagcgattga gcctaatcgg tggcggaagt tgccgctttg cattcggggt
      301 ggcgtgcagt gcggtgcttt gatatgccgt ttgtgtgttg aaacagggtg gtcggtgcat
      361 acgggtacgg tatggccaaa gctaaaagtg aaatacgctg aaacactgaa tgagccgctt
      421 tattgtttgt acggcctttg ctgccttgct atgatttaaa ttggattcgc ccgccggata
      481 ttttgggata tgaaagaatt tgacttcatc aaacggtatt tgcaaacagg cacggataag
      541 gatgtcgtat tgggcatagg cgacgatgcg gcgattgtcc gcccgcgtga aggcttcgat
      601 ttgtgtttca gtgcggatat gcttttgaag gacaggcatt tttttgccga tgtcaaacct
      661 gaggacttgg cttggaaggt tttggccgtc aatatttcag atatggcggc gatgggcgcg
      721 ataccgcgtt gggtgttgtt aagtgcggct ttgcccgaat tggatgaggt atggctgaaa
      781 cggttttgcg gcagcttttt cggtttggca aaaaagtttg gcgtaacgtt aatcggcggc
      841 gatacgacca agggcgatat ggcgttcaat gtaaccatta tcggcgaatt gccgaagggt
      901 agggcgttgc ggcgtgatgc ggcggttgcg ggcgacgata tttgggtgtc ggggcgtgtc
      961 ggtatggcgg cggcggcttt gaactgccgt ctgaaacggt gtgtgttgcc ggatgatgtg
     1021 tttgccgaat gcgaacaaaa gctgctccgc cccgagccaa gggttgggct ggggcttgcg
     1081 ctgttgccat ttgcccgggc ggcgcaggat gtttcagacg gcctcgcgca agatttgggg
     1141 catatcctga ccgcttccgg cgtgggggcg gaaatttggg ccgattcgct gccgtcttta
     1201 tccgtattga aagatatttt gccccgagcg caatggctgt cttatacttt ggcgggcggc
     1261 gacgattacg agctggtgtt taccgcgccg gaaagttgcc gcagccgcgt gcttgatgcg
     1321 gcagaacggt gcggcgtgcc ggtaacgcgc atcggcaaaa tcaacggagg atgccgtctg
     1381 aaggttttag atgccgacgg cagggaattg gaactacatt ctttaggatt cgatcatttt
     1441 ggctgatttt aaacctgact ttgcgtggct gttgaaacgg ccgttgtgtt ttttggcttt
     1501 tggtttcggc agcgggctgg ctccgttcgc gccgggtaca tttggcactt tggcggcact
     1561 gcctttggcg tttgtgctga ttttgctcgg catagacggg ctgctgctgg cttttttgtg
     1621 tatcgtgctg tttatgtggg gcatacgcat ttgcgcttat gcggaacgtg aaacgggtgt
     1681 cagcgaccat ggtgggattg tttgggacga gattgtcgcc atgctgtttg tgctggcgtt
     1741 tgtgccgttc aggtggacgt ggtggctggc ggcatttgtc ctattccgtc tgtttgacgc
     1801 gctcaaaccg tctcccgtcg gttggtttga caagaatctg cacggcggtt tgggcattat
     1861 ggcggacgat atggcggctg cggtgatgac tttgattgtc ttgaggattg caatgctgtt
     1921 ttaaacggtg ctgccttgta aaaatgccgc ctgaaagcct ttcagacggc attgtttcgg
     1981 aggttaacgc gttaccggtt tgtatttgat gcgtttcggt ttcgcgcctt cttcgcccaa
     2041 acggcgtttc ttatcggctt cgtattcctg atagttgccg tcgaagaaca cccatttgga
     2101 gtcgctttcg caagccaaga tatgcgtagc aatacggtcg aggaaccaac ggtcgtgcga
     2161 aatgaccatc acgctgccgg caaattccaa caatgcgtct tccaacgcgc gcagggtttc
     2221 cacgtcaagg tcgttagacg gttcatccag cagcaacaca ttgccgccgc ccaacaaggt
     2281 ttttgccaag tgcagacgac cgcgttcgcc gccagacaat tgacctgcaa ttttgctttg
     2341 gtcgctgcct ttgaagttga agcgtcccaa atattggcgg gcgggaattt caaactgacc
     2401 aacctgcaaa atatcgcggc cttcggcgat gttgtcgaac acggttttgt cgttttgcaa
     2461 accttcgcgg ctttggtcaa tcaggctcat tttcacggtt tgtccgattt tcacctcgcc
     2521 ggaatcaggc tgctctttgc ccgaaatcat tttgaacagt gtcgatttac ccgcgccgtt
     2581 cgggccgatg atgccgacaa tcgcgcccgc aggtactttg aagctcaaac cgtcaatcag
     2641 cactttatcg ccaaacgatt tggaaacatt cacaaattca atcacttcat tacccaaacg
     2701 ctcggcaaca gggataaaga tttcctgcgt ttcattgcgt ttttggtatt catagttgct
     2761 catttcttca aaacgagcca aacgcgcttt ggacttggct tggcggcctt tggcattttg
     2821 gcgcacccat tccaattcct gcttcatcgc cttcacgcgc gcggcttcgg attttgcctc
     2881 gttttccaag cgtttttctt tctgctccag ccaagacgag taattgcctt tccacggaat
     2941 accatagccg cggtcgagtt ccaaaatcca ttcggcggcg ttgtcgagga agtagcggtc
     3001 gtgcgttacc gcaacgactg tgccggggaa gcgcacgaga aattgctcca gccattccac
     3061 cgattccgca tccaagtggt tggttggctc gtccagcagc agcatatcgg gcttgctcaa
     3121 caagagtttg cacaaagcga cgcggcgttt ttcaccgccg gacagattgc cgattttggc
     3181 atcccattcc ggcaggcgca gcgcgtcggc agcgatttcc aattcgtgtt ccgcaccgcc
     3241 gcctgtggac gaacccgccg caataattgc ttccaaacgg ccctgttctt ccgccaacgc
     3301 gtcaaaatcc gcatcgggat tggcgtactc ggcatacact tcttccaagc gtttctgcgc
     3361 ggcagccact tcgcccaaac cgctttccac ttcctcacgc acggtttttt ccggatcaag
     3421 ctcaggctct tgcggcaggt agccgatttt aatgccgccc atcggcacgg cttcgccctc
     3481 aaattcctta tccacaccag ccataatccg cagcacggtg gacttgcccg cgccgttcaa
     3541 accgagcaaa ccgattttcg cgccggggaa gaaggaaagg gaaatatctt taatgatggt
     3601 tttctgcggc ggcacaacct tgctcacgcg cagcatagaa tagacgtatt gttgggacat
     3661 agttttctcg tttcggtcgg acaaatttca gacggcacat tttaaccgat aatttgattt
     3721 aagccagttt atccgcgaac cggtattgcc aaaatcgggc aggattcata aaatccgtct
     3781 atccctttga aattatacaa acaaaaaaaa taataatgat aggtgatcgc cgcctcggca
     3841 accattttgg attttccaaa gcaaatatag tg
//
LOCUS       DAXHPV010000167         3866 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.167, whole genome shotgun sequence.
ACCESSION   DAXHPV010000167 DAXHPV010000000
VERSION     DAXHPV010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3866)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3866)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3866
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.167"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            1..890
                     /locus_tag="ACFM6C_001832"
                     /pseudo
     CDS             1..890
                     /locus_tag="ACFM6C_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219143.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            895..2097
                     /locus_tag="ACFM6C_001833"
                     /pseudo
     CDS             895..2097
                     /locus_tag="ACFM6C_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003685727.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            2221..3771
                     /locus_tag="ACFM6C_001834"
     CDS             2221..3771
                     /locus_tag="ACFM6C_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HFC6159240.1"
                     /translation="MKKPLISVAAALLGVALGTPYYLGVKAEESLTQQQKILQEAGFL
                     TVESHQYERGWFTSTETTVIRLKPELLNNARKYLPDNLKTVLEQPVTLVNHITHGPFA
                     GGFGTQAYIETEFKYAPETEKVLERFFGKQAPVSLANTVYFNGSGKMEVSVPAFDYEE
                     LSGIRLHWEGLTGKTVYQKGFKSYRNSYDAPLFKIKLADKGDAAFEKAHFDSETSDGI
                     NPLALGSSNLTLEKFSLEWKEGVDYNVKLNELVNLVTDLQIGAFINPNGSIAPSKIEV
                     GKLAFSTKTGESGSFINSEGQFRFDTLVYGNEKYGPLDIHIAAEHLDASALTVLKRKF
                     AQISAKKMTEEQIRNDLIAAVKGEASGLFTNNPVLDIKTFRFTQPSGKIDVGGKIMFK
                     DMKKEDLNQLGLMLKKTEADIRMSIPQKMLEDLAVSQAGNIFSVNAEDEAEGRASLDD
                     INETLRLMVDSTVQSMAREKYLTLNGDQIDTAISLKNNQLKLNGKTLQNEPEPDFDEA
                     GMVSEPQQ"
BASE COUNT         1074 a          978 c          986 g          828 t
ORIGIN      
        1 ggcaaagcca acgcctttac cgcgccgatt accgtcgtca actacgacga acaagccctc
       61 aacaacaccg aggcgcgtac tttggtggat gccgtagcga aaaaagacgc ttccgtttgg
      121 cagttcggcg gcgaaagcaa cacgctgacc ggattgtatt tcagaggtta tcagcttgat
      181 gcgcgccaat tcagcgtcaa cggtttgaca ggtatgtacg gcacgcaagg cacgaccagc
      241 gtgcaagtcg gctccgcaca actgattcaa ggcgcgtcca ccgccgtaaa cggcatgaac
      301 cctgatggcg cggtatccgg ttccgtcaat atcgaaacca aaaaagccgc tgatgaaggc
      361 aaccgcaaaa tcggtttggc ccggttcggc aacaaccgcg cccaaggtac gttcgacttg
      421 ggccaacgtt tcggcgaaaa caaagcattc ggcgtgcgcg ccaacggcaa actgcgccac
      481 ggcgacaccc cgcgccacgg ttacagcgaa gacaacaaag aatttgcggt aaatgccgac
      541 tatcgcggcg aaacactgcg cgtagcgttc gattccatct acgcaaaacg caaaaccaac
      601 ggcggtcgcg cgcgtatgca ggacattcaa aacgccggcg gacgcttgtc ctgactttgg
      661 gcggacgttt ccaagcggtt gaatacacca ataagaaaaa atcacgcgga acggcagccg
      721 gagctagcaa ggtagaagtg aaggcaaacg gaaatattga gcatcaattg gcatcgttta
      781 cagccgacta tcccaattct tgggagaact ctgccaactt ggatgccaat atcaaagtca
      841 acagcctggc tttgtccgac accttgggct tcgtggataa caaataccgt tggcgcgccc
      901 gatggtaaaa ccaacctgct gccttcttgg aactggcaaa ataccgccgg ccaaaccaat
      961 atgcttacgt ttgaatggga tgcgtttgac aatgcccaaa ttaccggcgg tatcggctac
     1021 aacaaggcgc gttattacgg cacgctgatt tccccgaccg tttgcggtac aagcggtgcg
     1081 agcgaccaaa ccgctacctg cacaagtgcc aagcaatacc acaccggcac ggcgagcctg
     1141 accgaccaat atttccgcac attgagtatg aacctgaccg cacgcggcga atttgaaacc
     1201 ggtccggtaa cacataactg gagcaccgcg ttcgaccgtg ttatccgcca gcggaaaacc
     1261 attcagagcg gcgatgccaa acgtttcagc ccgatgctga tggcggcgtg ggtgccgcaa
     1321 cctgatttgg ttgtgtacgg caactatatg gaagacttgg agcctgccga tatcaaaacc
     1381 gatgattccg gcgaaacgac aatggcgaaa ccgcgtgtca gccgtcagtt tgaagtgggc
     1441 gtgcgtaaaa actggggcaa tttcgtaacc acgttaaacg cgttccaaat caaacgcccg
     1501 ggctactggc gcggtcatac aactaccaag acaacaaaag gggtaacaac aacgctgacc
     1561 tatggcaaca attccgattt cgcccgctat aaggcgcaag gcggcgtagc cggcgacgag
     1621 caaggtatgg aacgcaatcg cggtatcgag ttcaatgcct atgctaacct gttaaacaaa
     1681 accctgcgtc cgactttggg cctgatgtat ctgcaatcga ccgtgaaaga ctacccaaat
     1741 tcacgcgata tgctggttaa cggcgtacaa gtcgccaatc cgcgcgtaat tgccaaggca
     1801 ggtttggaat gggatacacc gtttgccaaa ggcttgactt taaacagcaa tgtttcgtat
     1861 ttcggcaagt cttaccaaga cacgcaaaaa caatacgcct tcccatccta taccttggtt
     1921 gatgtaggcg cgcgctacaa aaccaagctc ggcaaaaata cgttgaccgt cagcagctcg
     1981 gtggaaaatc tgttcaacaa aaactactgg caggtacagc gcggccaata cgaccgcagc
     2041 ttcgccgtcg tcggtctgcc gcgtacttac tggctgaagg cggaattgga tttctgattt
     2101 ctccgcatct ggaaaatgcc gtccgaacag gtttcagacg gcatttcttt taaagagata
     2161 tggcgggata cgcttaaata atgctattct agcgtctttg aaacctgctt gtttgaagtg
     2221 atgaaaaaac ctttgatttc ggttgcggca gcattgctcg gcgttgcttt gggcacgcct
     2281 tattatttgg gtgtcaaagc cgaagaaagc ttgacgcagc agcaaaaaat attgcaggaa
     2341 gcgggcttct tgaccgtcga atcgcaccaa tatgagcgcg gctggtttac ctctacggaa
     2401 acgacggtca tccgcttgaa accggagttg ctgaataatg cccggaaata cctgccggac
     2461 aacctgaaaa cagtgttgga acagccggtt acgctggtaa accatatcac gcacggccct
     2521 ttcgccggcg gattcggcac gcaggcgtac attgaaaccg agttcaaata cgcgcctgaa
     2581 acggaaaaag ttctggaacg cttttttggg aaacaagctc cggtttccct tgccaatacc
     2641 gtttatttta acggcagcgg taaaatggaa gtcagtgttc ccgccttcga ttatgaagag
     2701 ctgtcgggca tcaggctgca ctgggaagga ttgacgggaa aaacggttta tcaaaaaggt
     2761 ttcaaaagct accgcaacag ctatgatgcg cccttgttca aaatcaagct ggcagacaaa
     2821 ggcgatgccg cgtttgaaaa agcgcatttc gattcggaaa cttcagacgg catcaatccg
     2881 cttgctttgg gcagcagcaa tctgaccttg gaaaaattct ccctagaatg gaaagagggt
     2941 gtcgattaca acgtcaagtt aaacgaactg gtcaatcttg ttaccgattt gcagattggc
     3001 gcgtttatca atcccaacgg cagcatcgca ccttccaaaa tcgaagtcgg caaactggct
     3061 ttttcaacca agaccgggga atcaggctca tttatcaaca gtgaagggca gttccgtttt
     3121 gacacgctgg tgtacggcaa tgaaaaatac ggcccgctgg acatccatat cgccgccgaa
     3181 catctcgatg cttctgcctt aaccgtattg aaacgtaagt ttgcacaaat ttccgccaaa
     3241 aaaatgaccg aggaacaaat ccgcaatgat ttgattgccg ccgtcaaagg cgaggcttcc
     3301 ggactgttca ccaacaatcc cgtattggac attaaaactt ttcgtttcac acagccgtcg
     3361 ggaaaaatcg atgtgggtgg aaaaatcatg tttaaagaca tgaagaagga agatttgaac
     3421 caattgggtt tgatgctgaa gaaaaccgaa gccgacatca gaatgagtat tccccaaaaa
     3481 atgctggaag acttggcggt cagtcaggca ggcaatattt tcagcgtcaa tgccgaagat
     3541 gaggcggaag gcagggcaag tcttgacgac atcaacgaga ccttgcgcct gatggtggac
     3601 agtacggttc agagtatggc aagggaaaaa tatctgactt tgaacggcga ccagattgat
     3661 actgccattt ctctgaaaaa caatcagttg aaactgaacg gtaaaacgct gcaaaacgaa
     3721 ccggagccgg attttgatga agccggtatg gtttcagagc cgcagcagta atgggtcaaa
     3781 tgccgtctga aatgttcagg tggcattttg ttgtattgga aactgccgtt ttcaaccatt
     3841 ccttcagata agccgtgtcg gattcg
//
LOCUS       DAXHPV010000168         3839 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.168, whole genome shotgun sequence.
ACCESSION   DAXHPV010000168 DAXHPV010000000
VERSION     DAXHPV010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3839)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3839)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3839
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.168"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(124..459)
                     /locus_tag="ACFM6C_001835"
     CDS             complement(124..459)
                     /locus_tag="ACFM6C_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159241.1"
                     /translation="MMADKEQVEKMIYSENKQSVIDGMLGMTFSSEEDEIPWISEKLT
                     ELSKHKDLDIARLSLTCFGHLARMHENIGDCDKVIALLRSKQGNPDFQGFAEDALDDI
                     SFFIFKKRP"
     gene            complement(471..830)
                     /locus_tag="ACFM6C_001836"
     CDS             complement(471..830)
                     /locus_tag="ACFM6C_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159242.1"
                     /translation="MASYVSIKGWIECSDDDIKIIQENINNFWNNCPFNIEEKESAKI
                     YKNGWVFPTNSFNWSSYIFFGACVKSYFIIYFEKCIKTIMELDIEISGFFELDYYEDS
                     YKVNWKINNVNLIQTTN"
     gene            complement(1049..1504)
                     /locus_tag="ACFM6C_001837"
     CDS             complement(1049..1504)
                     /locus_tag="ACFM6C_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159243.1"
                     /translation="MVDAVVKTPEFLPFTSVGIFRFGADITQYKNILETFMYEPPDEF
                     RTEYYESPDSNLLIAVKKNKIISIFCYQELYFMGVNIIGLNFEDFKQLFHHPKSYGVD
                     KYYLSNESYPTYVYEFDEIGVQAWEAKGKIVTIITGGKDNYSTEPYYDE"
     gene            complement(1485..2114)
                     /locus_tag="ACFM6C_001838"
     CDS             complement(1485..2114)
                     /locus_tag="ACFM6C_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HINT domain-containing protein"
                     /protein_id="HFC6159244.1"
                     /translation="MVKTADGYKAIAHIQAGDRVLSKDEASGVTGYKPVTARYGNPYQ
                     ETVYIEISDGIGNSQTLISNRIHPFYSQGKWIQAGRLKKGDTLLSESGAKQTVQNITL
                     KQQPLKAYNLTVADWHTYFVKGNQAETEGVWVHNSCPPKRTGSSKNEKHGDGGRSQIS
                     AESRIAELKNKIIPGMHKNERLKIERTIRNIAKNANRKAKGEEHGRRGR"
     gene            complement(2259..2489)
                     /locus_tag="ACFM6C_001839"
     CDS             complement(2259..2489)
                     /locus_tag="ACFM6C_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159245.1"
                     /translation="MEKITQQYAYSELLRLFNQNASDEKIANLAFDFLYAWSKDNSPE
                     SRNIIYDLALIGEPGMELTRNDIKELIDSLVE"
     gene            complement(2477..>3839)
                     /locus_tag="ACFM6C_001840"
     CDS             complement(2477..>3839)
                     /locus_tag="ACFM6C_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272554.1"
                     /note="MafB polymorphic toxins, described in Neisseria,
                     are fratricidal toxins the provide a competitive
                     advantage. Each MafB is accompanied by an immunity protein
                     MafI; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MafB family polymorphic toxin"
                     /protein_id="HFC6159246.1"
                     /translation="AALIQPALAADLAQDPFITDNAQRQHYEPGGKYHLFGDPRGSVS
                     DRTGQINVIQDYTHQMGNLLIQQANINGTIGYHTRFSGHGHEEHAPFDNHAADSASKE
                     QGNVDEGFTVYRLNWEGHEHHPADAYDGPKGGNYPKPTGARDEYTYHVNGTARSIKLN
                     PTDTRSIRQRLSDNYNNLGSNFSDRADEANRKMFEHNAKLDRWGNSMEFINGIAAGAL
                     NPFISAGEALGIGDILYGTGYAIDKAAMRNIAPLPAEGKFAVIGGFGSVAGFEKNTRE
                     AVDRWIQENPNAAETVEALANILPFAKAEKLAKLGKAAKPGRAAKLGKAKVSEDFAVA
                     TQAKYKQYGDAHSANAQSALAKKLSGLEDAQNSASRTKTLPDGRIRYYEAERFARTEG
                     RTRGNSFVTEYNPKTGSTRQWTENYDHSGNVTMVHPKSINGQSVTSQHYPPTKQELDS
                     WKK"
BASE COUNT          914 a          842 c          843 g         1240 t
ORIGIN      
        1 agccaacaac ttcggtaaaa tcaagccggc aagcccctgc atcctgtgct aatcggagaa
       61 aatgccgtct gaaagccgaa taccgcttca gacggcattt gccagatttg accttgccgg
      121 tgcttacgga cgctttttaa atataaagaa ggaaatatcg tctaacgcat cttcggcaaa
      181 accttgaaaa tccggattgc cttgttttga gcgcaataaa gcaatcactt tatcgcaatc
      241 gccgatattt tcatgcatcc tggcgagatg tccgaaacag gttaatgaca atctggcaat
      301 atccaagtct ttatgcttcg acaactccgt taatttctca gaaatccaag ggatttcatc
      361 ctcctctgaa ctgaaggtca taccgagcat accgtcaata acactctgtt tattctcaga
      421 ataaatcatc ttttctactt gttccttatc agccatcatt ttttgtccat ttaattagtc
      481 gtttgtatta aattgacatt atttattttc caatttactt tataactatc ttcataataa
      541 tctaattcaa aaaaacctga tatttcaata tccaattcca ttattgtttt aatgcatttt
      601 tcaaaataaa taatgaaata agatttcacg catgcgccaa aaaaaatata gctgctccaa
      661 ttaaaactat ttgtcgggaa aacccaccca tttttatata tttttgcaga ttctttctct
      721 tcgatattga agggacaatt attccaaaaa ttattaatgt tttcttggat gatttttata
      781 tcatcgtcag agcattcaat ccatcctttt atggaaacat atgatgccat ttaatctcct
      841 aaacctgttt taacaatgcc gccttttgat tcaatatatg acttaacttg tgaatgaaca
      901 ccgtgcctgt tccgttcagc aagcacaggt tggattaaga ttcgacaatc tgtttggatt
      961 gacagaaagg tcgtctgaaa aatcgattac ggtttcagac gaccttttgt tgttgagttc
     1021 tcaacccaac ctatgcctgc cattaatgtt attcatcgta gtaaggttct gttgaataat
     1081 tgtctttgcc cccggtaatg atagtaacaa ttttcccttt tgcttcccaa gcttgtactc
     1141 ctatttcatc aaactcatag acatatgtcg gataagattc atttgataaa taatatttat
     1201 caacaccgta tgatttaggg tgatggaaaa gctgtttaaa atcttcaaaa ttcagaccta
     1261 ttatattaac gcccataaaa tatagctcct gataacaaaa tatcgaaata attttgtttt
     1321 tcttgacggc aattagtaaa tttgagtcgg gagattcata atattctgtt ctaaactcat
     1381 caggaggttc atacataaaa gtttccagta tgtttttgta ctgtgttata tccgcaccaa
     1441 aacggaatat tcctacagaa gtaaaaggta aaaattcggg agttttaacg accgcgtcga
     1501 ccatgctctt ctccttttgc ttttcgattg gcattttttg caatatttct gattgttcgc
     1561 tcaatcttta atcgttcatt tttgtgcatt ccgggaataa ttttattttt taattcagca
     1621 attcgtgatt ctgctgatat ttgacttcga ccgccatctc catgtttttc attcttggag
     1681 cttcctgttc ttttaggcgg acaagaatta tgaacccaaa ccccttccgt ctccgcctga
     1741 ttgcccttga cgaagtaagt atgccagtcg gcaacggtca gattgtaggc tttgagcggc
     1801 tgctgtttga gggtaatgtt ttgaactgtc tgttttgcac cgctttcgga aagcagggtg
     1861 tcgccttttt tcagacgacc tgcctgtatc cactttcctt gactgtaaaa cggatggatg
     1921 cggttggaaa tcagggtttg gctgttgccg atgccgtctg aaatttcaat gtaaacggtt
     1981 tcttgatacg gattgccgta tcgggcggta acaggtttgt atcccgttac cccgcttgcc
     2041 tcgtccttgg aaaggacgcg gtctccggct tgaatatggg caatagcttt gtagccgtct
     2101 gccgttttga ccaaggtgct gtcgtggaag gagcaggtgt aggatttttg aagaacttag
     2161 ttctcaatat cctgtttcaa atgaggggaa ggtcacctga aaatcaaaaa cggtttcaga
     2221 caaccttttg attgtgggat tttcagccca acctatgctt attcaactaa actgtcaatc
     2281 aattctttta tgtcattacg ggtcagttcc atacccggtt caccgataag tgctaaatca
     2341 tatattatat tacgcgattc tggagaatta tcttttgacc aagcatacag aaaatcaaaa
     2401 gcaagattcg caattttttc atccgaagcg ttttgattga acaatctgag cagttcagaa
     2461 tatgcgtatt gttgagttat tttttccatg aatctaattc ctgttttgtt ggtggataat
     2521 gctgagaggt tacactttgt ccgttaattg atttaggatg aaccatagtt acgttcccgc
     2581 tatggtcata attttctgtc cattgtcggg tactacctgt tttaggatta tattctgtaa
     2641 caaagctatt acccctcgtt cttccctcag ttctagcaaa tcgctcagct tcataatacc
     2701 tgattctccc atcaggtaaa gttttcgtcc tagacgcact attttgagca tcttccaaac
     2761 ctgacaattt cttagctaat gccgattggg cattggcaga atgcgcatcc ccatattgct
     2821 tgtatttggc ttgtgtggca acagcaaaat cctcgctaac ctttgccttc cctagttttg
     2881 ccgccctccc cggttttgcc gccttcccca gtttcgccaa cttctcagct ttggcaaacg
     2941 gcaggatgtt ggccagggct tcgacggttt cggcggcatt gggattttcc tgtatccacc
     3001 ggtcaacggc ttcgcgcgta ttcttttcaa agcccgccac gctgccaaag ccgccgatga
     3061 cggcgaattt gccctcggcg ggtaaggggg cgatgttgcg cattgcggct ttgtctatgg
     3121 cataacccgt tccgtacagt atgtcgccta tgcccaaggc ttcgcccgcg ctgataaagg
     3181 ggttgagtgc tccggcggca atgccgttga taaactccat gctgttgccc cagcggtcga
     3241 gcttggcatt gtgctcgaac atttttctgt tggcttcatc ggcgcggtcg gagaaattgc
     3301 tgccgagatt gttgtagttg tcggacaggc gttgccggat gctgcgggtg tcggtcggat
     3361 tgagtttgat gctgcgggct gtgccgttga cgtgataggt gtattcgtcg cgtgcgcccg
     3421 taggtttggg gtaattgccg cccttcgggc cgtcgtaggc atcggcggga tgatgttcgt
     3481 gtccttccca gttgagccgg tatacggtaa agccttcgtc aacgttgcct tgttctttgc
     3541 ttgcgctgtc ggcggcgtgg ttgtcgaagg gggcgtgttc ttcgtgtccg tgtccggaaa
     3601 agcgggtgtg gtagccgatt gtgccgttga tatttgcctg ctggatgagc agattgccca
     3661 tctggtgggt atagtcttgg atgacgttga tttgaccggt gcggtcggag acgctgccgc
     3721 gcgggtcgcc gaagaggtgg tatttgccgc cgggttcgta gtgctgccgt tgggcgttat
     3781 cggtaatgaa cgggtcttgc gccaagtccg ccgcgagggc gggctgtatg agtgcagcc
//
LOCUS       DAXHPV010000169         3796 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.169, whole genome shotgun sequence.
ACCESSION   DAXHPV010000169 DAXHPV010000000
VERSION     DAXHPV010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3796)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3796)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3796
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.169"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(99..1016)
                     /gene="thrB"
                     /locus_tag="ACFM6C_001841"
     CDS             complement(99..1016)
                     /gene="thrB"
                     /locus_tag="ACFM6C_001841"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HFC6159247.1"
                     /translation="MSVYTSVSDDEMRGFLSGYDLGEFVSLQGIAQGITNSNYFLTTT
                     SGRYVLTVFEVLKQEELPFFLELNRHLSMKGVAVAAPVARKDGRLDSVLAGKPACLVA
                     CLKGSDTALPTAEQCFHTGAMLAKMHLAAADFPLEMENPRYDAWWTEACARLLPVLSQ
                     ADAALLCSEIDALKDNLGNHLPSGIIHADLFKDNVLLDGGQVSGFIDFYYACQGNFMY
                     DLAIAVNDWARTADNKLDEALKKAFIGGYEGVRPLSAEEKAYFPTAQRAGCIRFWVSR
                     LLDFHFPQAGEMTFIKDPNAFRNLLLSLG"
     gene            complement(1052..1780)
                     /gene="ubiG"
                     /locus_tag="ACFM6C_001842"
     CDS             complement(1052..1780)
                     /gene="ubiG"
                     /locus_tag="ACFM6C_001842"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061542 - 3-demethylubiquinol-n
                     3-O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HFC6159248.1"
                     /translation="MGGKMSDKKYNVDEGEIAKFSRIADKWWDKSGEFKTLHDINPLR
                     LDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLHAALNN
                     VADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIVRACAKLVKPDGMVFFST
                     INKNPKSYLHLIVAAEYLLKFVPKGTHDWKKFIVPAELARMCRQAGLDVADTKGMTYH
                     VLSQTYALCDSTDVNYMFACRPAF"
     gene            1932..3173
                     /locus_tag="ACFM6C_001843"
     CDS             1932..3173
                     /locus_tag="ACFM6C_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015173 - aromatic amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0015801 - aromatic amino acid transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transporter"
                     /protein_id="HFC6159249.1"
                     /translation="MPTKTPSLFGGAMIIAGTVIGAGMLANPTATSGVWFTGSLAVLL
                     YTWFSMLSSGLMILEVNTHYPHGASFDTMVKDLLGRGWNIINGIAVAFVLYLLTYAYI
                     FVGGDLTAKGLGSALGGNVSLTVGQLVFFGILAFCVWASARLVDRFTSVLIGGMVLTF
                     IWATGGLIADAKMPVLFDTQAPVGTNYWIYAATALPVCLASFGFHGNVSSLLKYFKGD
                     APKVAKSIWTGTLIALVIYVLWQTAIQGNLPRNEFAPVIAAEGQVSVLIETLSKFAQT
                     GNMDKILSLFSYMAIATSFLGVTLGLFDYIADIFKWNDSVSGRTKTAALTFLPPLISC
                     LLFPTGFVTAIGYVGLAATVWTGIIPAMLLYRSRKKFGAGKTYKVYGGLWLMVWVFLF
                     GIVNIAAQVLSQMELVPVFKG"
     gene            3181..3312
                     /locus_tag="ACFM6C_001844"
     CDS             3181..3312
                     /locus_tag="ACFM6C_001844"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159250.1"
                     /translation="MPSEARRRLQTALPQQTATVFRHTAHYPAPHAQIPPRQTGTQP"
     gene            3320..>3796
                     /locus_tag="ACFM6C_001845"
     CDS             3320..>3796
                     /locus_tag="ACFM6C_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HFC6159251.1"
                     /translation="MMKLKIDIATNNFKHGGGTERYTLDLVKGLNRQNITPAVYATKF
                     DHGIPEYAMIEPHLVDQHRTLKKLRSFLFSSRLAQTRKNSAAKLIACHHADYADLLIC
                     GGTHLGYLHHMAQKPNLLDRLAIRRNRSNYATAKLIMAHSHMMRRELVGLYGVPPER"
BASE COUNT          901 a         1212 c          881 g          802 t
ORIGIN      
        1 gaaaatactc ggctatcgtc tcattttcgt tttaatcagc cataaaaatg ccgtctgaaa
       61 ccctttcaga cggcatttct gtcaaacgcc ggacgcactc aacccaaact caacagcagg
      121 ttgcggaacg cgttcgggtc tttgataaac gtcatctcgc ccgcctgcgg aaaatgaaag
      181 tccaacaggc gcgacaccca aaaacggatg cagccggcac gttgggcggt cgggaaatac
      241 gccttttctt cggcactcaa ggggcgcacg ccctcataac caccgataaa cgcctttttc
      301 aacgcctcat ccaacttatt gtccgccgtc cttgcccaat cgttgaccgc aatcgccaag
      361 tcatacataa aattgccctg gcaggcataa taaaaatcga tgaagcccga tacctgaccg
      421 ccgtcaagca acacattgtc tttaaacagg tcggcgtgga tgatgcccga aggcagatga
      481 ttgccgagat tgtccttcag cgcatcgatt tcggaacaca gcagcgcggc atcggcttgc
      541 gacaggacag gcagcagccg ggcgcacgcc tccgtccacc acgcatcgta acgcgggttt
      601 tccatttcca aagggaaatc ggcggcggca aggtgcattt tcgccaacat cgcaccggta
      661 tggaaacact gctcagccgt cggcagcgcg gtatccgaac ctttcaggca ggcaactagg
      721 caggcgggct tgcccgccaa aacggaatca agccggccgt ctttgcgcgc aaccggcgcg
      781 gcaaccgcca cgcccttcat actcaaatgc cggttaagct ccagaaaaaa cggcagctct
      841 tcctgtttca acacttcaaa cacggtcagc acataacgtc ccgaagtcgt cgtcagaaaa
      901 taattgctgt tggtaatccc ctgcgcgatg ccctgcaggg aaacaaattc ccccaaatcg
      961 taaccgctca ggaagccgcg catttcatca tcggaaacac tggtataaac agacatatcc
     1021 attcacccgt tcaaaacaat caaacccgcc gtcagaacgc cggacggcag gcaaacatat
     1081 aattcacatc ggtcgaatcg cacagggcat aagtttgcga caaaacatgg taagtcatac
     1141 ccttcgtatc cgccacatcc aagcccgcct gacggcacat ccgcgccagc tcggcaggca
     1201 cgataaattt tttccagtcg tgcgtgcctt tggggacaaa cttcaacaga tattccgccg
     1261 ccacaatcag atgcaggtac gatttcgggt ttttattgat ggtggaaaaa aacaccatgc
     1321 cgtccggttt gaccagcttg gcacaagcac gcacgatggc ggcgggatcg gggacgtgtt
     1381 ccatcatttc catgcacgtt accacatcga acgagtgcgg ttccgcctcg gcaaggtctt
     1441 ccacgcggat acattcgtat tcgatatcgg cgacattgtt caaagccgcg tgcaggcggg
     1501 cggtttccag cgactgctcc gccatgtcga tgcccttgac aaacgccgcg ccgcgccgcg
     1561 ccatgctttc cgccaagatg ccgcctccgc agcccacgtc caaaacccgt ttgccgcaca
     1621 aatccgcgtg tccgtcgata taatcgagcc ggagcggatt gatgtcgtgc aaggttttga
     1681 actcgcccga cttgtcccac catttgtcgg caatccggct gaatttggcg atttccccct
     1741 catcgacatt atattttttg tcggacattt tccctcccat ctgacgaacc gcccactcca
     1801 aaacccaaga ttatactatg gaacacaatg ccgtctgaaa gccttttcgg gcggcgcggc
     1861 gcaaatgcct tacaaatcct tacactttac ggcataatgg cggctcgctt tttctggcag
     1921 aaagacaaaa tatgcccacc aaaacccctt cactgttcgg cggcgcgatg attatcgccg
     1981 gcacggtcat cggcgcaggt atgctcgcca acccgaccgc cacatccggc gtatggttta
     2041 ccggctcgct ggccgtgttg ctgtacacct ggttttctat gctttccagc ggcctgatga
     2101 ttttggaagt caacacccat tatccgcacg gcgcaagttt cgacacgatg gtcaaagacc
     2161 tgctcggacg cggctggaac atcatcaacg gcatcgccgt cgccttcgtt ttatacctgc
     2221 tcacctacgc ctacatcttc gttggcggcg acctgaccgc caaaggctta ggcagcgcct
     2281 tgggcggcaa tgtttcactc accgtcggac aactcgtctt cttcggcatc ctcgcctttt
     2341 gcgtatgggc atccgcacgc ttggtcgacc gcttcaccag cgtcctcatc ggcggcatgg
     2401 tattaacctt tatttgggca accggcggcc tgattgccga tgccaaaatg cccgtcctgt
     2461 tcgacaccca agcccccgtc ggcaccaact actggattta cgccgccacc gccctgcccg
     2521 tctgccttgc gtcattcggt ttccacggca acgtctccag cctgctcaaa tactttaaag
     2581 gcgacgcgcc caaagtggct aaatccatct ggacgggcac actgattgcg ctggtaattt
     2641 acgtcctctg gcaaaccgcc atccaaggca acctgccgcg caacgagttc gcccccgtga
     2701 ttgccgccga agggcaagtc tccgtcctca tcgaaaccct gtccaaattc gcccaaaccg
     2761 gcaatatgga taaaatattg tccctgtttt cctatatggc gatcgccacc tcgtttttag
     2821 gcgtaacctt aggtctgttc gactacatcg ccgacatctt caaatggaac gacagcgtgt
     2881 ccggccgcac caaaaccgcc gcgctgacct tcctgccgcc tctaatttcc tgcctgctct
     2941 tccccaccgg ctttgttacc gccatcggct acgtcggcct ggcggcaacc gtctggacag
     3001 gcatcatccc cgccatgctg ctctaccgtt cgcgcaaaaa attcggcgca ggcaaaacct
     3061 ataaagttta cggcggcttg tggctgatgg tttgggtctt ccttttcggc atcgtcaaca
     3121 tcgccgcaca ggtattgagc caaatggaac tcgtccccgt atttaaagga taaaggcaaa
     3181 atgccgtctg aagcccgccg gcggcttcag acggcattgc cgcaacaaac ggcaaccgta
     3241 ttccggcaca cagcgcatta ccctgcccct cacgcacaaa tcccgccccg acaaaccggg
     3301 acgcaaccat aaaggaacaa tgatgaagct caaaatagac attgcaacca acaacttcaa
     3361 acacggcggc ggcacggaac gctacacatt ggatttggta aagggtctga acagacaaaa
     3421 catcacaccg gccgtttatg cgacgaaatt tgatcacggc attcctgaat acgccatgat
     3481 cgaaccccat cttgtcgatc aacaccggac gctgaaaaaa ctacgctcat tcctcttttc
     3541 aagccggctc gctcaaacca gaaaaaacag tgccgccaaa ctgattgcct gccaccacgc
     3601 cgattacgcc gacctcctca tctgcggcgg cacacacttg ggctacctgc accatatggc
     3661 gcaaaaaccg aacctgctcg accgcctcgc catacgccgt aaccgcagca actacgccac
     3721 cgccaaactg attatggcgc attcccatat gatgcggcgc gaactggtcg gactgtacgg
     3781 cgttccccct gaaaga
//
LOCUS       DAXHPV010000170         3734 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.170, whole genome shotgun sequence.
ACCESSION   DAXHPV010000170 DAXHPV010000000
VERSION     DAXHPV010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3734)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3734)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3734
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.170"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            299..1420
                     /gene="dnaJ"
                     /locus_tag="ACFM6C_001846"
     CDS             299..1420
                     /gene="dnaJ"
                     /locus_tag="ACFM6C_001846"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HFC6159252.1"
                     /translation="MSNQDFYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNKEAE
                     EKFKEVQKAYETLSDKEKRAMYDQYGHAAFEGGGQGGFGGFGGFGGAQGFDFGDIFSQ
                     MFGGGSGRAQPDYQGEDVQVGIEITLEEAAKGVKKRINIPTYEACDVCNGSGAKPGTS
                     PETCPTCKGSGTVHIQQAIFRMQQTCPTCHGAGKHIKEPCVKCRGAGRNKAVKTVEVN
                     IPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVRIRAHKIFQRDGLDLHCELPISFAT
                     AALGGELEVPTLDGKVKLTVPKETQTGRRMRVKGKGVKSLRSSATGDLYCHIVVETPV
                     NLTDRQKELLEEFERISTGLENQTPRKKSFLDKLRDLFD"
     gene            1616..3634
                     /locus_tag="ACFM6C_001847"
     CDS             1616..3634
                     /locus_tag="ACFM6C_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0035673 - oligopeptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006857 - oligopeptide transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OPT family oligopeptide transporter"
                     /protein_id="HFC6159253.1"
                     /translation="MNKSLSGSVEEYRELTLRGMILGALITVIFTASNVYLGLKVGLT
                     FASSIPAAVISMAVLKFFKGSNILENNMVQTQASAAGTLSTIIFVLPGLLMAGYWSGF
                     PFWQTTLLCIAGGILGVIFTIPLRYAMVVKSDLPYPEGVAAAEILKVGGHEEGDNRQG
                     GSGIKELAAGGALAGLMSFCAGGLRVIADSASYWFKSGTAIFQLPMGFSLALLGAGYL
                     VGLTGGIAILLGISIAWGIAVPYFSSHIPQPSDIEMAAFAMKLWKEKVRFIGAGTIGI
                     AAVWTLLMLLKPMVEGMKMSFKSFGGGAPATERAEQDLSPKAMIFWVLSMMFILGVSF
                     YHFIGDSHITGGMAWLLVVVCTLLASVIGFLVAAACGYMAGLVGSSSSPISGVGIVSI
                     VVISLVLLLVGESGGLMADEANRKFLLALTLFCGSAVICVASISNDNLQDLKTGYLLK
                     ATPWRQQVALIIGCIVGALVISPVLELLYEAYGFTGAMPREGMDAAQALAAPQATLMT
                     TIASGIFAHNLEWVYIFTGIAIGAVLIAADLVLKKSSGGKLALPVLAVGMGIYLPPSV
                     NMPIVAGAVLAAVLKHIIGKKAENREGRLKNADRIGTLFAAGLIVGESLIGVIMAFII
                     AFSVTNGGSDAPLALNLQNWDAAASWLGLAFFVTGMIIFARRVLKAGR"
BASE COUNT          801 a          839 c         1110 g          984 t
ORIGIN      
        1 aaaccagtgc tgcccgcgga taaaaaataa aataggggga agtctgcagc cgcatcaaat
       61 gccgtctgaa catgcgttcg ggcggcgttt ttataacaaa aacacttcat ggcggttggt
      121 tttatgcctg tctaagtttt tgtgtcgtgc atacctgaag atttcagacg gcatcggttt
      181 atgctgtctg aaaagtgtat tccgtttcag tttgtaagct atggcagtct gtttgtcttg
      241 tgttttgcgc aattgccctt attttgagcc gtgattttat tttgaattag atgaaaaaat
      301 gagtaatcaa gatttttatg cgacgctggg tgtggcaaga acagctaccg atgatgagat
      361 taaaaaagcc taccggaaat tggcgatgaa ataccatccc gaccgcaatc ctgacaataa
      421 agaggcggaa gagaagttta aagaagtaca aaaggcgtat gaaactttgt ccgacaagga
      481 aaagcgcgct atgtacgacc agtatggtca tgcggcgttt gaaggcggcg gacagggggg
      541 cttcggaggg tttggcggat ttggcggtgc gcagggtttt gactttgggg atattttcag
      601 ccaaatgttt ggaggcggtt cggggcgcgc ccagcctgat tatcagggtg aggacgttca
      661 agtcggtatc gaaatcacgc ttgaagaagc cgcaaaaggt gtgaagaaac gcatcaatat
      721 tccgacttat gaagcgtgtg atgtctgtaa cggcagtggc gcgaaaccgg ggacatcccc
      781 ggaaacctgc ccgacttgca aaggttcggg tacggtgcac atccagcagg cgattttccg
      841 tatgcagcag acttgtccga cctgccacgg tgcgggcaaa cacattaaag aaccttgcgt
      901 caaatgccgt ggcgcggggc ggaataaggc ggtcaagacg gtggaagtca atattcccgc
      961 cggtatcgat gacgggcagc gtatccgttt gagcggcgaa ggcggaccgg gtatgcacgg
     1021 tgcgcctgcc ggcgacctgt atgtaaccgt tcgcattcgg gcgcataaga ttttccaacg
     1081 cgacggtctg gacttgcatt gcgaactgcc gatcagtttt gccacggctg ctttgggcgg
     1141 ggagttggaa gtgccgacct tggacggaaa ggtcaagctc accgtcccca aagaaaccca
     1201 aaccggcagg aggatgcgcg tgaagggtaa gggtgtcaaa tctttacgca gcagcgcgac
     1261 cggcgatttg tactgccata ttgttgtcga aacgcctgtc aatttgaccg accgtcaaaa
     1321 agagcttttg gaagaatttg agcggatttc taccggcttg gaaaaccaaa caccgcgcaa
     1381 gaaatcgttt ttagacaagc tgcgcgattt gtttgattga ttttaaggtt cggaaacaag
     1441 cagccgtatc ggggaatctc cctgatatgg ctgtttttgt ttgtttaaaa atagttttta
     1501 ttttcaatgg ggtatggggc agggtgggat aactgttttt aactgttctt tttaaaactt
     1561 gacatcatgg cgcgatgcca acaatatgcg ggaatctgtt gtcaaaggaa gaataatgaa
     1621 taaatcttta tccggttcgg tagaagaata ccgcgaactg acgctccgag gcatgatact
     1681 cggtgcattg attactgtaa tttttactgc gtccaacgtt tacctcggtt tgaaagtcgg
     1741 actgaccttt gcctcgtcga ttccggcggc ggtaatttcg atggcggttt taaagttttt
     1801 caaaggcagc aatattttgg aaaacaacat ggtgcagacc caagcttcgg cggcgggtac
     1861 gctttcgacc atcatcttcg tcctgcccgg tttgctgatg gcgggctact ggagcggttt
     1921 cccgttctgg cagacgacgc ttttatgtat tgccggcggg attttggggg tgattttcac
     1981 cattccgctg cgttacgcga tggtggtgaa aagcgatttg ccttatccgg aaggtgtggc
     2041 ggctgctgaa attttgaaag tgggcggtca tgaagaaggg gataaccgtc agggcggcag
     2101 cggcatcaaa gagctggcgg ccggcggtgc gttggcggga ttgatgagct tttgcgccgg
     2161 aggtctgcgt gtgattgccg atagcgcgag ttattggttt aaaagcggta cggcaatttt
     2221 ccaactgccg atgggctttt cactggcatt gttgggcgcg ggctatttgg tcggactgac
     2281 gggcggtatc gccattctgt tgggcatttc gattgcttgg ggcattgccg tgccgtattt
     2341 ttcatcgcac atcccgcagc cttccgatat agaaatggcg gcgtttgcga tgaagctgtg
     2401 gaaggaaaaa gtacgcttca tcggcgcggg aaccataggt atcgcggcgg tttggacgct
     2461 tttgatgctg ctcaagccaa tggtggaagg catgaagatg tcgttcaaga gttttggcgg
     2521 cggtgcgccc gcaacagaac gcgctgaaca ggatttgtcg cctaaagcca tgattttctg
     2581 ggtattgtct atgatgttta ttctaggcgt gtcgttttac cactttatcg gcgattcgca
     2641 cattacgggc ggcatggctt ggcttttggt ggtcgtttgc acgcttttgg cttccgtcat
     2701 cggctttttg gtcgccgccg cctgcggtta tatggcgggt ttggtcggct cgtcttccag
     2761 cccgatttcc ggcgtgggca tcgtttccat cgtcgtgatt tcgctggttt tgctgctggt
     2821 gggcgaatcc ggcggtttga tggcggatga ggcaaaccgc aaatttttgc tggcactgac
     2881 tttattttgc ggctcggcag taatctgcgt ggcttcgatc tccaatgaca acctgcaaga
     2941 cctgaaaacc ggctacctgc tcaaagccac gccttggcgg cagcaagtcg ccctgattat
     3001 cggctgtatc gtcggtgcgc tggttatttc acccgtgttg gaactgcttt acgaagccta
     3061 cggctttacc ggcgcaatgc cgcgcgaagg tatggacgcg gcgcaggctt tggcagcccc
     3121 tcaagcgact ttgatgacga ccatcgcgtc gggcattttc gcccacaacc ttgaatgggt
     3181 ctatatcttt accggcatcg cgattggcgc ggtgttgatt gccgccgatt tggtgttgaa
     3241 aaaatcatca ggcggcaaac ttgccctgcc cgtcctcgcg gtcggtatgg gcatttatct
     3301 gccgccgtcc gtcaatatgc ccatcgtggc aggcgcggtg ttggcggcgg tgttgaaaca
     3361 catcatcggc aaaaaagcgg aaaaccgtga aggccgtctg aaaaacgccg accgtatcgg
     3421 tacgcttttc gcggccggtc tgattgtcgg tgaaagtctg attggtgtga ttatggcgtt
     3481 tattattgcc ttctccgtga ccaacggcgg ctcggacgcg ccgctcgcgt tgaatctgca
     3541 aaactgggat gccgccgctt cttggctggg cttggcgttc ttcgttaccg gaatgattat
     3601 ttttgcacgg cgcgtactga aggcgggtag gtagcctgtc ggagaaaatg ccgtctgaaa
     3661 cgttcagacg gcatttttta tcgggaaagt gtaaggcgga gcttttcggc ttgcgcccac
     3721 gttttgccgg caag
//
LOCUS       DAXHPV010000171         3702 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.171, whole genome shotgun sequence.
ACCESSION   DAXHPV010000171 DAXHPV010000000
VERSION     DAXHPV010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3702)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3702)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3702
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.171"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            330..3531
                     /gene="nalP"
                     /locus_tag="ACFM6C_001848"
                     /pseudo
     CDS             330..3531
                     /gene="nalP"
                     /locus_tag="ACFM6C_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248900.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="serine endopeptidase autotransporter NalP"
BASE COUNT         1002 a         1009 c          983 g          708 t
ORIGIN      
        1 taaagaatcg ttctctttga gctaaggcga ggcaacgccg tactggtttt tgttcatcca
       61 ctataactag ggaaattcaa attaagttag aattatccct atgagaaaaa gccgtctaag
      121 ccggtataaa caaaataaac tcattgagct atttgtcgaa agttcaaatt tccattttaa
      181 aacaattagt aaaatcgagt ttatcctagt tgtccaagac aacccctata ataatataat
      241 tcaaaatata aaaatgggtt acatctaaac attacggaat ttttattccc tcgcctgaat
      301 tctattgtca gattcaagga gacctcatca tgcgaacgac cccaaccttc cctacaaaaa
      361 ctttcaaacc ggctgccatg gcgttagctg ttgcaacaac actttctgcc tgcttaggcg
      421 gcggcggcac ttctgcgccc gacttcaatg caggcggcac cggtatcggc agcaacagca
      481 gagcaacaac agcgaaatca gcagcagtat cttacgccgg tatcaagaac gaaatgtgca
      541 aagacagaag catgctctgt gccggtcggg atgacgttgc ggttacagac agggatgcca
      601 aaatcaatgc cccccccccc gaatctgcat accggagact ttacaaaccc aaatgacgca
      661 tacaagaatt tgatcaacct caaacctgca attgaagcag gctatacagg acgcggggta
      721 gaggtaggta tcgtcgatac aggcgaatcc gtcggcagca tatcctttcc cgaactgtat
      781 ggcagaaaag aacacggcta taacgaaaat tacaaaaact atacggcgta tatgcggaag
      841 gaagcgcctg aagacggagg cggtaaagac attaaagctt ctttcgacga tgaggccgtt
      901 atagagactg aagcaaagcc gacggatatc cgccacgtaa aagaaatcgg acacatcgat
      961 ttggtctccc atattattgg cgggcgttcc gtggacggca gacctgcagg cggtattgcg
     1021 cccgatgcga cgctacacat aatgaatacg aatgatggaa ccaagaacga aataatgtct
     1081 gcagccatcc gcaatgcatg ggtcaagctg ggcgaacgtg gcgtgcgcat cgtcaataac
     1141 agttttggaa caacatcgag ggcaggcact gccgaccatt tccaaatagc caattcggag
     1201 gagcagtacc gccaagcgtt gctcgcctat tccggcggtg ataaaacaga cgagggtatc
     1261 cgcctgatgc aacagagcga ttacggcaac ttgtcctacc acatccgtaa taaaaacatg
     1321 cttttcattt tttcggcaag caatgacgca caagctcagc ccaacacact gaccctattg
     1381 ccattttatg aaaaagatgc tcaaaaaggc attatcacag tcgcaggcgt agaccgcagt
     1441 ggagaaaagt tcaatggctc caaccattgc ggaattactg ccatgtggtg cctatcggca
     1501 ccctatgaag caagcgtccg tttcacccgt acaaacccga ttcaaattgc cggaacatcc
     1561 ttttccgcac ccatcgtaac cggcacggcg gctctgctgc tgcagaaata cccgtggatg
     1621 agcaacgaca acctgcgtac cacgctgctg acaacggctc aggacatcgg tgcagtcggc
     1681 gtggacagca agttcggctg gggactgctg gatgcgggta aggccatgaa cggacccgcg
     1741 tcctttccgt tcggcgactt taccgccgat acgaaaggta catccgatat tgcctactcc
     1801 ttccgtaacg acatttcagg cacgggcggc ctgatcaaaa aaggcggcag ccaactgcaa
     1861 ctgcacggca acaacaccta tacgggcaaa accattatcg aaggcggttc gctggtgttg
     1921 tacggcaaca acaaatcgga tatgcgcgtc gaaaccaaag gtgcgctgat ttataacggg
     1981 gcggcatccg gcggtagcct gaacagcgac ggcattgtct atctggcaga taccgaccga
     2041 tccggcgcaa acgaaaccgt gcacatcaaa ggcgatctgc agctgggcgg cgaaggtacg
     2101 ctgtacacac gtttgggcaa actgctgaaa gtggacggta cggcgatgac cggcggcaag
     2161 ctgtacatgt cggcacgcgg caaaggggca ggctatctca accgtaccgg acaacgtgtt
     2221 cccttcctga gtgccgccaa aatcgggcgg gattattctt tcttcacaaa catcgaaacc
     2281 gacggtggtc tgctggcttc cctcgacagc gtcgaaaaaa cagcgggcag tgaaggcgac
     2341 acgctgtcct attatgtccg tcgcggcaat gcggcacgga ctgcttcggc agcggcacat
     2401 tccgcgcccg ccggtctgaa acacgccgta gaacagggcg gcagcaatct ggaaaacctg
     2461 atggtcgaac tggatgcctc cgaatcatcc gcaacacccg agacggttga aactgcggcc
     2521 gccgaccgca cagatatgcc gggcatccgc ccctacggcg caactttccg cgcagcggca
     2581 gccgtacagc atgcgaatgc cgccgacggt gtacgcatct tcaacagtct cgccgctacc
     2641 gtctatgccg acagtaccgc cgcccatgcc gatatgcagg gacgccggct gaaagccgta
     2701 tcggacgggt tggaccacaa cgctacgggt ctgcgcgtca tcgcgcaaac ccaacaggac
     2761 ggtggaacgt gggaacaggg cggtgttgaa ggcaaaatgc gcggcagtac ccaaaccgtc
     2821 ggcattgccg cgaaaaccgg cgaaaatacg acagcagccg ccacactggg catgggacac
     2881 agcacatgga gcgaaaacag tgcaaatgca aaaaccgaca gcattagtct gtttgcaggc
     2941 atacggcacg atgcgggcga tatcggctat ctcaaaggcc tgttctccta cggacgctac
     3001 aaaaacagca tcagccgcag caccggtgcg gacgaacatg cggaaggcag cgtcaacggc
     3061 acgctgatgc agctgggcgc actgggcggt gtcaacgttc cgtttgccgc aacgggagat
     3121 ttgacggtcg aaggcggtct gcgctacgac ctgctcaaac aggatgcatt cgccgaaaaa
     3181 ggcagtgctt tgggctggag cggcaacagc ctcactgaag gcacactggt cggactcgcg
     3241 ggtctgaagc tgtcgcaacc cttgagcgat aaagccgtcc tgtttgcaac ggcgggcgtg
     3301 gaacgcgacc tgaacggacg cgactacacg gtaacgggcg gctttaccgg cgcgactgca
     3361 gcaaccggca agacgggggc acgcaatatg ccgcacaccc gcctggttgc cggtctgggc
     3421 gcggatgtcg aattcggcaa cggctggaac ggcttggcac gttacagcta cgccggttcc
     3481 aaacagtacg gcaaccacag cggacgagtc ggcgtaggct accggttctg acggacagga
     3541 agcagacagc cgcaaagatc acggtctttg cggctgtttc ttatgaaaag aaaaccctat
     3601 tccaattgcc tgcttctatt gtttcaagac ttcttccaaa gattcggcat caatcagatg
     3661 tatagcggat taacaaaaat caggacaagg cggcgaagcc gc
//
LOCUS       DAXHPV010000172         3635 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.172, whole genome shotgun sequence.
ACCESSION   DAXHPV010000172 DAXHPV010000000
VERSION     DAXHPV010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3635)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3635)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3635
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.172"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            53..391
                     /locus_tag="ACFM6C_001849"
                     /pseudo
     CDS             53..391
                     /locus_tag="ACFM6C_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272457.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
     gene            405..578
                     /locus_tag="ACFM6C_001850"
     CDS             405..578
                     /locus_tag="ACFM6C_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159254.1"
                     /translation="MSKKSLIALMTAAMQPDFSHSDLGIRYAMPTQGCWTQAHRKSGV
                     AAAKRAAKKKRHK"
     gene            503..835
                     /locus_tag="ACFM6C_001851"
                     /pseudo
     CDS             503..835
                     /locus_tag="ACFM6C_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217309.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            832..1242
                     /locus_tag="ACFM6C_001852"
     CDS             832..1242
                     /locus_tag="ACFM6C_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein tyrosine phosphatase"
                     /protein_id="HFC6159255.1"
                     /translation="MIEFVRAKKRLLWAFVLLLVWTCGYRYAADKAEAEQTALIATYR
                     HSSMVAAEQYALQLKKTQDERQRWYDFSQKQGRKPVKKQYPPQTKKAGYLKTKEELLA
                     ELACLKAEMVALKKPDALIHGKEMRQKERNSSQG"
     gene            1247..1795
                     /locus_tag="ACFM6C_001853"
                     /pseudo
     CDS             1247..1795
                     /locus_tag="ACFM6C_001853"
                     /inference="COORDINATES: protein motif:HMM:NF033516.0"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            1811..1996
                     /locus_tag="ACFM6C_001854"
                     /pseudo
     CDS             1811..1996
                     /locus_tag="ACFM6C_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(2315..2677)
                     /gene="ssrA"
                     /locus_tag="ACFM6C_001855"
     tmRNA           complement(2315..2677)
                     /gene="ssrA"
                     /locus_tag="ACFM6C_001855"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(2740..3345)
                     /locus_tag="ACFM6C_001856"
     CDS             complement(2740..3345)
                     /locus_tag="ACFM6C_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Smr/MutS family protein"
                     /protein_id="HFC6159256.1"
                     /translation="MNTDFQNILKQLGKQAQKEAAEKQAAEKNKQKQEQDFDFSQAVG
                     QVSPLKNRQQYYAPPDKTPIKVRPKDNRADEENYFYIGSTYNDPPASFSKNGQGKNDI
                     QRLKNGYYPVVTDVDLHGYTQEEAQKVLNEFIAFTQKRGVCGEIIHGSGLGSKGYKPV
                     LKNMTRNWLMQHPDVLAYAEPREGNDGCVRILLKRKLRQQD"
BASE COUNT          910 a          822 c          964 g          939 t
ORIGIN      
        1 cctaaatgtc ttggtgggaa tttaggggat tttggggaat tttgcaaagg tctcaatcag
       61 catttaccgt aaagcgtttt gggagcgtta ccgcgccgac caaatgccgg aagcggtcgc
      121 gttccaattt tttgatgcct gcgtcaacca cggttacggc aatgccgccc gtatgctgca
      181 acgcgccgca ggcgtaccgg acgacggcgt tatcggagca gtcagcctca aagccatcaa
      241 ttcccttccc gaaaacgacc ttttattgcg gttcaacgcc gagcgtctgg tcttttatac
      301 caagctcggt acgttcacct ctttcggcaa gggctgggta cgccgtgtgg cgcaaaacct
      361 gattcacgcg tctgcagata acactgatta aagggagata aaccatgtca aaaaagtcac
      421 tcatcgccct aatgaccgca gccatgcagc ccgatttcag ccacagcgac ctaggcattc
      481 gctacgccat gccgactcag ggatgttgga cgcaagccca ccgcaagagc ggggtagccg
      541 ccgcgaaacg cgcagccaaa aaaaagcgtc acaaataacc gcctttttcc gatggctggg
      601 cggcttggtc tctaatccgg ccacaggaaa aatcagccat accaaactat gggcaaacgt
      661 cgccgcagcc gccatgactt ggaagttcgt gcaggcggcg gacgcgcccg aatggctcta
      721 gtgggcttat ggcgcattgg tcggcgggta tgcattaatc aaacgcggca tcgcggcgat
      781 tccgcagttg gcagaaatca aaaaatccgc aaatcaggaa ggggggcggc aatgattgaa
      841 tttgtccgag ccaaaaaacg gctgctttgg gcatttgtgc ttttgcttgt gtggacgtgc
      901 ggttaccgat acgccgccga caaggccgaa gcggaacaaa ccgccctgat tgccacctat
      961 cggcattctt ctatggttgc ggcggaacaa tatgccttgc agcttaaaaa aacgcaggac
     1021 gaaaggcagc ggtggtacga cttttcccaa aaacaaggaa gaaagcccgt gaaaaaacag
     1081 tatccgccgc aaacgaaaaa agccggctat ctgaaaacca aggaagaact gcttgcggaa
     1141 ttggcttgcc ttaaagcgga aatggttgcc ctaaaaaagc ccgatgcctt aatccatggg
     1201 aaagaaatgc ggcagaaaga acgcaactcg tcgcagggtt aaggcaatgc catccgttga
     1261 actgctgttg gagattgtcg gactgccacg cggcaccttt tattaccaat tggccgtcca
     1321 atcggcagaa gacaaatatg ccgatttgaa acagcatatc catgatattt atcgacgaca
     1381 taagggaaga tacggctacc ggaggattgc agcagccatc cttcatgcag gaacaccggt
     1441 caatcacaag aaagtcagcc gtctgatggc gaagacgggg ctgaaggcag tgatacggcg
     1501 gcgcaaatac cgctcgttca aaggagaagt cggcaaaatt gcgccgaata tcctgcgacg
     1561 ctgtttccat gcagaaaagc cgaatgagaa atgggtaacg gacgttaccg agttcaatgt
     1621 aggcggagaa aagatatacc tttctccgat tatggatttg tttaacgggg aaatcgtcag
     1681 ttaccgtatt caaacccgcc cgactttcga tttggccgac gagatactga aaggtgcgcc
     1741 ggagaaaccg ggatcgtctg aaaagccgat actgcattcg gatcaaggtt ggcaatatca
     1801 gatgtttttt tatagtggat taaatttaaa tcaggacaag gcgatgaagc cgcagacagt
     1861 acaaatagta cggcaaggcg aggcaacgcc gtactggttt aaatttaatc cactatacaa
     1921 caaagataga atcaagttga aattaaaagg gctgagcctt gttcagtaca gaattcagtc
     1981 cctgaaagcc gcttgattaa actgtccgac tttttggggt cagttcggct tcggcatttt
     2041 tttatccgtt tgggggtaac ttgtttggaa agctgcaagc ttataaataa aggattacat
     2101 ttaagttttg ggtaaccttt ttaaaaaaat gcgtgatgac ttttgcattt ttaaggcgtt
     2161 ttttggggta attcgtgaaa agttacccca aaagttaccc cataaatggc gaaaactcaa
     2221 gcatacgcca gcatattcaa ggcaacaaaa aagccttgaa actgttgaag ttcaaggctt
     2281 ttttgtgttg caggatactg ctgaaaatag ggtatggtgg aggcgggggg aatcgaaccc
     2341 ccgtccgaaa gtcctctaca aagcgttcta catacttagt tgtgtctatt tgaaaatctt
     2401 atttccatca tgccgaccaa caggcctttt ggaaaccagt taccttaaat ctcatttcct
     2461 gccaagtaac ccggtaggaa accagtcaat gtaagatgac gttgcggtgg ctttcgccac
     2521 acagcccatt gaccgactgc tgcaacggct agccttaagc ggctaaagcg taagtttcgt
     2581 cgtttgcgac tatttgaatt cagtgtttta cgggaatctg agaccccggt atgcccgcat
     2641 ctgcttcgca accctcgtcg aaaccaaggt cgcccccaga aatggtttgc aaattatacg
     2701 gatattgtgc ggtgctgcca agtctgtcgg agaaatttgt cagtcttgct gccttaattt
     2761 gcgtttgagc aggatgcgga cgcagccgtc gttgccttcc cggggttcgg cgtaggcgag
     2821 tacgtcgggg tgttgcatca gccagtttcg ggtcatattt ttcagaacgg gtttgtagcc
     2881 tttggaacct aatccgctgc cgtggatgat ttcgccgcat acgccgcgtt tttgggtgaa
     2941 tgcgatgaat tcgttgagga ctttttgggc ttcttcctgt gtgtagccgt gcaggtcgac
     3001 atcggtaacg acgggatagt atccgttttt caggcgttgg atgtcgtttt ttccctgtcc
     3061 gtttttgctg aagctggcgg gcgggtcgtt gtatgtgctg ccgatgtaga agtagttttc
     3121 ttcgtcggcg cggttgtctt tgggacggac tttgatgggg gttttgtcgg gcggcgcata
     3181 atattgctgc cggtttttta atggggagac ttgtccgact gcttgtgaaa aatcgaaatc
     3241 ctgttcttgt ttttgcttgt ttttttcggc tgcctgtttt tctgccgctt ctttttgggc
     3301 ttgtttgccc agttgtttga ggatgttttg gaagtcggta ttcatatttt ttcctgttat
     3361 ttgtccgatg gctgtttcgg gcggggtttt aatttgccgg aatgtttacc aatcggggga
     3421 ggatgatttt gttgcctgcg tatgtttttt gaaagtgtga ttgtatatca aaaagaaatg
     3481 cggcaaccgt cggcagtgtt gattgccgga aatgcggacc ggtcgaaccg atatgcccga
     3541 acgcctgata aagttttaaa aacctgcctt gcgaagcagg ctgacgtgtt ttgccaatct
     3601 tgaattgccg gaaacgcgaa acacggaaat ctgat
//
LOCUS       DAXHPV010000173         3563 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.173, whole genome shotgun sequence.
ACCESSION   DAXHPV010000173 DAXHPV010000000
VERSION     DAXHPV010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3563
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.173"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..263)
                     /locus_tag="ACFM6C_001857"
     CDS             complement(<1..263)
                     /locus_tag="ACFM6C_001857"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159257.1"
                     /translation="MQFGLRQGSGCLIPSVTSGIAEFVGNGRCGLGGVLPNACVTSLC
                     RSISLATASLSKLFFRRPFIKYYRQRLNANFKPAPISSGLLSN"
     gene            complement(348..728)
                     /locus_tag="ACFM6C_001858"
     CDS             complement(348..728)
                     /locus_tag="ACFM6C_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="HFC6159258.1"
                     /translation="MNIRFFALTVPVLSLAACAVPEAYDGGGRGHMPPVQNQAGTDDF
                     RAFSCENGLSVRVRHLDSGKVALRLDGRRAVLSSDVAASGERYTAEHGLFGNATEWHQ
                     KGGEAFFGFTDAYGNSVETSCRAR"
     gene            1205..3286
                     /locus_tag="ACFM6C_001859"
     CDS             1205..3286
                     /locus_tag="ACFM6C_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009267 - cellular response to starvation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation CstA family protein"
                     /protein_id="HFC6159259.1"
                     /translation="MKSLKTFLIWGIVVLVGLASFTTLALSRGEQVSAVWMVTAAISV
                     YCIAYRFYSLYIAKYVMQLDPNRLTPAERHNDGLDYVPTHKGVLFGHHFAAIAGAGPL
                     VGPVLAAQMGYLPGTLWIIFGVVFAGAVQDMMVLFVSMRRDGKSLGDIVKQELGTVPG
                     VIASIGILMIMVIIMAVLALIVVKALVHSPWGTFTIAATMPIALFMGIYTRYIRPGKI
                     GEISIVGFILLMLAVIYGEDVAKSSIGHWFDLDGIQLTWAIMIYGFVASVLPVWLLLT
                     PRDYLSTFLKIGTIAALALGIVIVNPTLQMPAVTHFIDGSGPVFSGALFPFLFITIAC
                     GAVSGFHALISSGTTPKMLENETHVRMIGYGGMLMESFVAIMALAAAASLDPGVYFAM
                     NSPAALIGTDANTAAEVITTKLQFPVDAATLLHTAKEVGENTILSRAGGAPTLAVGMA
                     HIMSRLIPGEAMMAFWYHFALLFEALFILTAVDAGTRVARFMIQDLGSIFYKPFGNTD
                     SIPANLIATFFAVALWGYFLYTGVTDPLGGINSLWPLFGIANQMLAGVALIMCAVVLI
                     KMKRDRYVWVVLVPAVGVLFVTCYAGLQKLFHSDPRISFLAHAGKYSDALAKNEVLAP
                     AKDIGEMAQIIFNDKINAGLTLLFLSVVVIVAAYGLRTALKARKVGWPTAKEIPAVYR
                     DGKQPEAQSEA"
     gene            3276..3470
                     /locus_tag="ACFM6C_001860"
     CDS             3276..3470
                     /locus_tag="ACFM6C_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HFC6159260.1"
                     /translation="MKHKLASWWKTIKLTANLMAGVPDYENYVAQQRKHNPNAPVMTK
                     LQFQDYCRKRRCGANGGRCC"
BASE COUNT          797 a         1042 c          914 g          810 t
ORIGIN      
        1 tcattggata acagccctga agaaatcgga gcaggtttaa agttggcatt gagccgctgc
       61 cgataatatt tgataaaagg tcgtctgaaa aacagctttg acaaagacgc ggttgccaaa
      121 gagatcgacc tacaaaggga agtaacgcag gcgttcggca aaacgccgcc caagccgcag
      181 cggccgttgc cgacgaactc ggcaataccc gaagttacgg acggtatcag gcagcccgaa
      241 ccctgccgga ggccgaactg caaaacaaat ccgacacaaa aaaccgtccg tccgacacaa
      301 aaaaccgccc gaaaaatccg gacggcggtt caaacaggct gccccgttta acgggcgcgg
      361 caggaagttt cgaccgaatt gccgtaggca tcggtaaagc cgaaaaaggc ttcgccgcct
      421 ttctggtgcc actcggttgc gtttccgaac aaaccgtgtt cggcggtata gcgttcgccg
      481 gatgcggcaa cgtcggaaga gaggacggca cgcctgccgt ccagccgcaa cgcgactttg
      541 ccgctgtcca aatggcggac gcgcacagac aaaccgttct cgcaggaaaa cgcccgaaaa
      601 tcgtccgtgc cggcttggtt ttgaacaggc ggcatatgcc cgcgtccgcc gccatcatac
      661 gcttccggca cggcacaggc cgccaaagac aaaaccggta cggtcagcgc gaaaaacctg
      721 atattcataa aagctcccca ataaaaataa gatatgaaac aaccgccctg attccaagct
      781 gcggcaacgc catactataa acggacgcgc aaacacacaa gcccgataac cggaatttac
      841 ccgcgatgaa tcaataatcc ggattgcgcg ccccttcttt acccgtcttc cggcaccgcc
      901 ttttgcctga cgatgccgtc caaacccgcc tgtccgcccg aaggaatgta aattttttcc
      961 aaattccaag taaaaaccgc tatcagtgtg ctaatttgcg ttaaaatcct attcggcgtt
     1021 taacgttttg tgcgcccgca tccctgcact gtttgatgcg ggcataaggc acaaatcccg
     1081 acaagcgcac tgtttcatac ttcgtcaatc attcagactc cggtttgtgc ccgtgccggc
     1141 agatggttcg gccgtttccc gccgttcagg catattccga cagtgtgaga taaggattta
     1201 ttcgatgaaa tcactcaaaa ccttcctcat ttggggcata gtggtactgg tcggcttagc
     1261 atcctttacc actctggccc tcagccgagg cgaacaggtc agcgcggtat ggatggttac
     1321 cgccgccata tccgtttatt gcatcgccta ccgtttttac agtctctaca tcgccaaata
     1381 tgtgatgcag cttgatccga accgcctgac tccggcagaa cgccacaacg acggcttgga
     1441 ctacgttccg acgcacaagg gcgtattgtt cggacaccac tttgccgcga ttgccggcgc
     1501 gggccctttg gtcggcccgg ttttggcggc gcaaatgggt tacctgcccg gtactttgtg
     1561 gattatcttc ggcgtggtgt ttgccggcgc ggtacaggat atgatggtct tgttcgtctc
     1621 tatgcgccgc gacggtaagt ctttgggcga tattgtgaaa caggaactcg gcactgtccc
     1681 cggcgtgatt gcctccatcg gtattttgat gattatggtc atcattatgg cggtgttggc
     1741 gttgattgtc gtaaaagcac tggttcacag cccttggggt acgttcacca ttgccgccac
     1801 tatgccgatt gccctgttta tgggtattta cacgcgctat atccgtccgg gcaaaatcgg
     1861 cgagatttcc atcgtcggct ttattttgct gatgctggcg gtaatttacg gcgaagatgt
     1921 ggcgaaaagt tccatcggac attggttcga ccttgacggc atccagctca cttgggcgat
     1981 tatgatttac ggctttgtcg cctccgtatt gcccgtatgg ttgctgctca ctccgcgcga
     2041 ctatctctcc accttcctga aaatcggtac gattgcggcc ttggctttgg gcatcgtcat
     2101 cgtcaatccc actttgcaaa tgcctgccgt aacccacttt atcgacggtt cgggcccggt
     2161 attctcaggc gcattgttcc cgttcctctt catcaccatc gcctgcggtg cggtttcagg
     2221 cttccacgcg ctgatttctt ccggcaccac gccgaaaatg ctggaaaacg aaacccacgt
     2281 ccgtatgatt ggttacggcg gtatgttgat ggaaagtttc gtagccatta tggcgcttgc
     2341 cgccgccgca tcgcttgatc ccggcgtgta cttcgccatg aacagccctg ccgccctgat
     2401 cggtacggat gccaacaccg ccgccgaagt gattaccacc aagctgcaat tccctgtcga
     2461 tgccgcaacg ctgttgcaca ccgctaaaga agttggagaa aacaccatcc tgtcccgtgc
     2521 cggcggtgcg cccaccctcg cagtcggtat ggcgcacatt atgagccgcc tgattccggg
     2581 cgaggcgatg atggcgttct ggtatcactt cgccctgttg tttgaagcct tgttcatcct
     2641 gaccgccgtc gatgccggta cgcgcgtcgc acgttttatg attcaagact tgggcagcat
     2701 cttctacaaa cctttcggca acaccgactc catcccagcc aacctgattg cgaccttctt
     2761 cgccgtggca ttgtggggct actttctcta caccggcgta accgacccgc tgggcggcat
     2821 caactcgctc tggcctttgt tcggcatcgc caaccaaatg ctggcgggcg tggccttgat
     2881 tatgtgtgcc gtggtgctga ttaagatgaa acgcgaccgt tatgtttggg tggtactcgt
     2941 tcccgccgtc ggcgtactgt tcgtaacctg ctacgccggc ctgcaaaaac tgttccacag
     3001 cgatccgcgc atcagcttcc ttgcccacgc cggcaaatac agcgacgcat tggctaaaaa
     3061 cgaagtcctt gcgcctgcca aagacatcgg cgaaatggcg caaatcatct tcaacgacaa
     3121 gattaatgcc ggtctgaccc tcctcttctt gtcggttgtc gtgattgtcg ccgcgtacgg
     3181 tttgcgtacc gccctcaaag cacgcaaagt cggctggccg accgccaaag aaatcccggc
     3241 ggtgtaccgc gacggcaaac agccggaggc acaaagtgaa gcataagctc gcgtcttggt
     3301 ggaaaaccat caagctgacg gcaaacttga tggcaggcgt gcccgattat gaaaactacg
     3361 ttgcacagca gcgcaaacat aatcccaacg cccccgtgat gaccaagctg cagtttcaag
     3421 actattgccg caaacgccgc tgcggcgcaa acggcggacg ctgctgttag ccccgcctga
     3481 aacaaatgcc gtctgaacgc cgcttcagac ggaattttta taatatagtg gattaacaaa
     3541 aatcaggaca aggcgacgaa gcc
//
LOCUS       DAXHPV010000174         3554 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.174, whole genome shotgun sequence.
ACCESSION   DAXHPV010000174 DAXHPV010000000
VERSION     DAXHPV010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3554)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3554)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3554
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.174"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            1351..3492
                     /gene="fetA"
                     /locus_tag="ACFM6C_001861"
                     /gene_synonym="frpB"
     CDS             1351..3492
                     /gene="fetA"
                     /locus_tag="ACFM6C_001861"
                     /gene_synonym="frpB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_021438799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor FetA/FrpB"
                     /protein_id="HFC6159261.1"
                     /translation="MNAPFFRLSLLSLTLAAGFAHAAENNANVALDTVTVKGDRQGSK
                     IRTNIVTLQQKDESTATDMRELLKEEPSIDFGGGNGTSQHMTLRGMGQNSVDIKVDNA
                     YSDSQILYHQGRFIVDPALVKVVSVQKGAGSASAGIGATNGAIIAKTVDAQDLLKGLD
                     KNWGVRLNSGFASNEGVSYGASVFGKEGNFDGLFSYNRNDEKDYEAGKGFRNVNGGKT
                     VPYSALDKRSYLAKIGTTFGDGDHRIVLSHMKDQHRGIRTVREEFTVGDEDSRINIGR
                     QAPAYRETTQSNTNLAYTGKDLGFVEKLDANAYVLEKKRYSADDKGSGYAGNVEGPNH
                     TQITTRGMNFNFDSRLAEQTLLKYGINYRHQEIKPQAFLNSQFSIKDKEGATEKDKQK
                     NREDEKIAKAYKLSNPTKTDTGVYVEAIHDIGDFTLTGGLRYDRFKVKTHDGKTVSNS
                     SLNPSFGVIWQPHEHWSFSASHNYASRSPRLYDALQTHGKRGIISIADGTKAERARNT
                     EIGFNYNDGTFAANGSYFWQTIKDALANPQNRHDSVAVRETVNAGYIKNHGYELGASY
                     RTGGLTAKVGVSHSKPRFYDTHKDKLLSANPEFGAQVGRTWTASLAYRFQNPNLEIGW
                     RGRYVQKATGSILAAGQKNRDKQLENVVRKGFGVNDVFANWKPLGKDTLNVNLSVNNV
                     FNKFYYPHSQRWTNTLPGVGRDVRLGVNYKF"
BASE COUNT          944 a          975 c          815 g          820 t
ORIGIN      
        1 ttctggattc ccactttcgt gggaatgacg aattttaggt ttctgttttt ggttttctgt
       61 ttttgaggga atgatgaaat tttaagtttt aggaatttat cggaaaaaac agaaaccgct
      121 ccgccgtcat tcccgcgcag gcgggaatct agaatttcaa tgcctcaaga atttatcgga
      181 aaaaaccaaa acccttccgc cgtcattccc gcaaaagtgg gaatctagaa atgaaaagca
      241 gcaggaattt atcggaaatg accgaaactg aacggactgg attcccgctt tcgcgggaat
      301 gacggcgaca gggttgctgt tatagtggat gaacaaaaac cagtacgtcg ttgcctcgcc
      361 ttagctcaaa gagaacgatt ctctaaggtg ctcaagcacc aagtgaatcg gttccgtcct
      421 atttgtactg tctgcggctt cgccgccttg tcctgatttc cgttcgtttt cggttattcc
      481 cgataaatta ccgccgtttc tcatcatttc tttaaccctt cgtcattccc gcgcaggcgg
      541 gaatctagtt tttttgagtt ccagttgttt ctgataaatt cttgcagctt tgagttccta
      601 gattcccgct tttgcgggaa tgacacggaa aggttgcttt tcgtcattcc cacgcaggct
      661 tcgtcattcc cgcacaggcg ggaatccagt ctgttcggtt tcagtcattt ccgatagatt
      721 cctgccacgt tagaggttct agattcccgc ttttgcggga aggacgcgga aaggttgctt
      781 ttcgtcattc ccgcgcaggc gggaatctag gttcgttcgg tttcagtcat ttccgataga
      841 ttcctgccgc gttaggggtt ctagattccc gctttcgcgg gaaggacgcg gaaaggttgc
      901 ttttcgtcat tcccgcgcag gcgggaatcc agtctgttcg gtttcggttt tttccgatag
      961 attcctgcca cgttaggggt tctagattcc cgctttcgcg ggaaggacgc ggaaaggttg
     1021 cttttcgtca ttcccgcatt tgttaatcca ctatatttcc gccgtttttt atagtggact
     1081 aacaaaaacc agtacagcgt tgcctcgcct tgccgtacta tctgtactgt ctgcggcttc
     1141 gtcgccttat cctgattttt gttagtccac tatacatttc cgacaaaacc tgtcaacaaa
     1201 aaacaacact tcgcaaataa aaacgataat cagctttaca caaatccccc ctctcgttaa
     1261 tataaacaaa aataattatt atttttctta tcctgccaaa ccttaacggt ttggatttac
     1321 ttcccttcat acactcaaaa ggacgaacaa atgaacgccc cgtttttccg cctcagcctg
     1381 ctctcgctta ccctggcggc aggttttgcc catgcggcag aaaataatgc caatgtcgca
     1441 ttggataccg ttaccgtaaa aggcgaccgc caaggcagca aaatccgtac caacatcgtt
     1501 acgcttcaac aaaaagacga aagcaccgca accgatatgc gcgaactctt aaaagaagag
     1561 ccctccatcg atttcggcgg cggtaacggc acgtcccaac atatgacctt gcgcggtatg
     1621 ggtcagaact ctgtcgacat caaggtggac aacgcctatt ccgacagcca aatcctttac
     1681 caccaaggca gatttattgt cgatcccgct ttggttaaag tcgtttccgt acaaaaaggc
     1741 gcgggttccg cctctgccgg tatcggcgcg accaacggcg cgattatcgc caaaaccgtc
     1801 gatgcccaag acctgctcaa aggcttggat aaaaactggg gcgtgcgcct caacagcggc
     1861 tttgccagca acgaaggcgt aagctacggc gccagcgtat tcggaaaaga gggcaacttc
     1921 gacggtttgt tctcttacaa ccgcaacgat gaaaaagatt acgaagccgg caaaggtttc
     1981 cgcaatgtca acggcggcaa aaccgtaccg tacagcgcgc tggacaaacg cagctacctc
     2041 gccaaaatcg gaacaacctt cggcgacggc gaccaccgca tcgtgttgag ccacatgaaa
     2101 gaccaacacc ggggcatccg taccgtccgt gaagaattta ccgtcggcga cgaagattca
     2161 cggataaata ttggccgcca agcccctgct taccgcgaaa ccacccaatc caacaccaac
     2221 ttggcgtaca ccggcaaaga tttgggcttt gtcgaaaaac tggatgccaa cgcctatgtg
     2281 ttggaaaaga aacgctattc cgccgatgac aaaggcagcg gttacgcagg caatgtagaa
     2341 ggccccaacc atacccaaat caccactcgg ggtatgaatt tcaacttcga cagccgcctt
     2401 gccgaacaaa ccctgttgaa atacggtatc aactaccgcc atcaggaaat caaaccgcaa
     2461 gcgtttttga actcgcaatt ttcaataaaa gataaagagg gcgcaaccga gaaagacaag
     2521 caaaaaaacc gtgaagatga aaaaattgcc aaagcctaca aactttccaa cccgaccaaa
     2581 accgataccg gcgtatatgt tgaagccatt cacgacatcg gcgatttcac gctgaccggc
     2641 ggactgcgtt acgaccgctt caaggttaaa acccacgacg gcaaaaccgt ttcaaacagc
     2701 agccttaacc cgagtttcgg cgtgatttgg cagccgcacg aacactggag cttcagcgcg
     2761 agccacaact acgccagccg cagcccgcgc ctgtatgacg cgctgcaaac ccacggtaaa
     2821 cgcggcatca tctcgattgc cgacggcacg aaagccgaac gcgcgcgcaa taccgaaatc
     2881 ggcttcaact acaacgacgg cacgtttgcc gcaaacggca gctacttctg gcaaaccatc
     2941 aaagacgcac ttgccaatcc gcaaaaccgc cacgactctg tcgccgtccg tgaaactgtc
     3001 aacgccggct acatcaaaaa ccacggttac gaattgggcg cgtcctaccg cacaggcggc
     3061 ctgactgcca aagtcggcgt aagccacagc aaaccgcgct tttacgatac gcacaaagac
     3121 aagctgttga gtgcgaaccc tgagtttggc gcacaagtcg gccgcacttg gacagcctcc
     3181 cttgcctacc gcttccaaaa tccgaatctg gaaatcggct ggcgcggacg ctatgttcaa
     3241 aaagctacgg gttcgatatt ggcagcaggt caaaaaaacc gcgacaaaca attggaaaac
     3301 gttgtacgca aaggtttcgg tgtgaacgat gtcttcgcca actggaaacc gctgggcaaa
     3361 gacacgctca atgtcaatct ttcggtcaac aacgtgttca acaagttcta ctatccgcac
     3421 agccaacgct ggaccaatac cctgccgggc gtgggacgtg atgtacgctt gggcgtgaac
     3481 tacaagttct aaaacgcaca tcccgaaaaa atgccgtctg aaagcctttc agacggcatc
     3541 tgttctgata attt
//
LOCUS       DAXHPV010000175         3550 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.175, whole genome shotgun sequence.
ACCESSION   DAXHPV010000175 DAXHPV010000000
VERSION     DAXHPV010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3550)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3550)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3550
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.175"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(1022..1792)
                     /gene="xth"
                     /locus_tag="ACFM6C_001862"
     CDS             complement(1022..1792)
                     /gene="xth"
                     /locus_tag="ACFM6C_001862"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008311 - double-stranded DNA 3'-5' DNA
                     exonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HFC6159262.1"
                     /translation="MKITTWNVNSLNVRLPQVQNLLADNPPDILVLQELKLDQDKFPA
                     AALQMMGWHCVWSGQKTYNGVAIVSRNAPEDVHIGLPALPDDPQRRVIAATVGGVRVI
                     NVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMTRYGKLVLLGDFNIAPADADCYDPE
                     KWHEKIHCSSVERQWFKNLLDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDH
                     ILVSPAMAAALKDVRVDLETRALERPSDHAPVTAEFDW"
     gene            complement(1846..2133)
                     /locus_tag="ACFM6C_001863"
     CDS             complement(1846..2133)
                     /locus_tag="ACFM6C_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArsR family transcriptional regulator"
                     /protein_id="HFC6159263.1"
                     /translation="MNTIPLHTILKLMAHPERMAILIQLLDSERNIAELAKSLSLPAT
                     AVSGHLNRLRAGGLVDFTRYHRIIEYRLISEDAATILRTIRDLENKRAVWC"
     gene            2235..2468
                     /locus_tag="ACFM6C_001864"
     CDS             2235..2468
                     /locus_tag="ACFM6C_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159264.1"
                     /translation="MDDCTGLYVPFPTFFANTRKGGLSDGIKLPPLPCLTLLPNGIIR
                     IVQKMPYNRRTSCPADASVPSGKQNTCLKRCFF"
     gene            complement(2601..3482)
                     /gene="nadC"
                     /locus_tag="ACFM6C_001865"
     CDS             complement(2601..3482)
                     /gene="nadC"
                     /locus_tag="ACFM6C_001865"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HFC6159265.1"
                     /translation="MPSENTLFSLPDTLLRPIVEQALSEDLGRRGDITSAAVIAPDKT
                     AKLFLVSREDGVIAGMDLARLAFQTMDPSVRFQAEIRDGQVVRAGQTLAAVEGNACAL
                     LAAERTALNYLTHLSGIATATARAVAEVAKYGTDIVCSRKTIPLLRVLQKYAVRAGGG
                     VNHRMGLDDAILVKDNHLAYCGSIAQAVRQAKQAVGPLTCVEIEVDTLAQLDEAIAAG
                     AERILLDNMDDETLKEAANRCHTQTAHPHTVYCEASGGIGFDRLKRVAQTGVDGIALG
                     YLTHSSRSLDIGLDFLA"
BASE COUNT          864 a          857 c          893 g          936 t
ORIGIN      
        1 tgaaactgat gcagatatag tggattaaca aaaatcagga caaggcgacg aagccgcaga
       61 cagtacaaat agtacggcaa cgctgtactg gtttaaattt aatccactat attttgtaat
      121 agctgccatt atgcctacta ggatatatac cttctatata atccttattt aaataaaaac
      181 ccttataaaa atctgtgtta tctgtcggga ttgaaaaaaa gattttatct ttctcatcag
      241 gtttatattt gctatcaata tcaaaaagag aataaggatt acaatgagtt cgacatacta
      301 ggtaaaaatt tatatcttgg atcatgaaat attcgatatt tatcaggatc gaaagatgct
      361 aaaaattcat caatatcggt actggatatt ttgtcatcac taataaacat cgctagagat
      421 gggcgacttt gattttccat ttgttgatta gtaaaggata taaatactaa cttgccattg
      481 tcaaaccaca tagatttata tagtggatta aatttaaacc agtacgtcgt tgcctcgcct
      541 tgccgtacta tttgtactgt ctgcggcttc gtcgccttgt cctgattttt gttaatccac
      601 tatagttatt gcctttggga gaatcaattc tgacagcaca taacataggt tcatctttac
      661 agtcgttata ttgggtttca tcaaactcaa ctgcatagca caataaaggc aataggaaaa
      721 aaaggagatt aatttattac tatacataag gcagcctgac tattcattct aaaataaatc
      781 cggtttttaa tatttgattc tgctccggat tatatacata ataaatttta ctgctccaaa
      841 atctgatatt aaccctatgg atttcataaa tttttcagaa aaataggctg tgcttgaaca
      901 atccgccgac tccggctgtt tgtcagggaa aaggcaatta ttttcggtta gtcagcagcc
      961 tatcctattg aatcacttaa agatatggat gtttgtcaac gccatatcaa aacacggtct
     1021 tttaccaatc gaattctgcc gtcaccggcg cgtggtcgct cggacgctcc agcgcgcgcg
     1081 tctccaaatc aacgcggaca tccttcaacg ccgccgccat cgcaggcgac accaaaatat
     1141 ggtcgatacg caggcccagt ttgcgttgga acatcgcgcc gcgatagtcg aaccaggtat
     1201 agaacgcgcc ttcgggatgg acttggcgca ggctgtcggt cagtcccaaa tccagcaggt
     1261 ttttgaacca ctgccgttcg acggacgaac agtggatttt ttcgtgccat ttttcagggt
     1321 cgtaacagtc cgcatcggca ggcgcgatat tgaaatcgcc cagtagcacc agtttgccgt
     1381 agcgggtcat ttcatcgcgg acaaattcgg ttaacgcggc aaaccattgt tctttatatt
     1441 tgaatttcgg gctgtcgagg gcttcgccgt tgacgcaata gacattgatg acgcgcacac
     1501 cgccgacggt tgccgcaatc acgcgccgtt gcggatcgtc cggcagcgcg ggcagcccga
     1561 tatgcacgtc ttccggcgcg ttgcggctga cgattgccac gccgttgtag gttttctgcc
     1621 cgctccaaac acagtgccag cccatcattt gcaaagcggc ggccggaaat ttgtcctgat
     1681 cgagtttgag ttcctgcaaa accaaaatat cgggcggatt gtcggcaagc aggttttgca
     1741 cctgcggcag ccgcacattg agcgaattga cgttccaagt ggtgattttc ataacatttc
     1801 cgaaaaatgc cgtctgaaac gttcagacgg caaaaggaaa ggattttaac accataccgc
     1861 gcgtttgttt tccaaatcgc ggattgtccg cagaatcgtt gccgcgtctt cggaaatcag
     1921 gcggtattcg ataatgcggt ggtaacgcgt aaagtccacc agaccgcccg ccctcaggcg
     1981 gttcaaatgg ccggaaacgg cggtggccgg cagggataag gattttgcca gttcggcgat
     2041 attgcgttcg ctgtccaaca gttggatcag tatcgccata cgttcgggat gcgccataag
     2101 tttgagtatg gtgtggagcg gtattgtgtt catcggtatt cctaaaacct ttgccgcccg
     2161 ccaagcggat tgacgggcga cagatatgga tgattgtgat tatctttata aatcgtatta
     2221 taaatcaaat atttatggat gattgtacag gattgtatgt tccttttccc actttttttg
     2281 caaacacgcg taaaggcggg ctttcagacg gcataaaact gccgccccta ccctgcctca
     2341 ccctgttgcc gaacggaatc atccgcattg ttcaaaagat gccttacaac cgccgcacgt
     2401 cttgccctgc cgatgcctcc gtgccttcgg gcaaacaaaa tacctgcctg aaacgctgtt
     2461 ttttctaaag catcacgacc ttcacgaaaa atgccgtctg aagaatcttt cagacggcat
     2521 ttcctccttg aggcaataac cggattacgg ttaggcggtt ccttgtctga catatcagac
     2581 aactgccgac accctaaaac tcatgccaag aaatccaaac ctatgtccaa cgagcggctg
     2641 ctgtgggtca gatagccgag ggcgatgccg tccacgccgg tttgcgccac gcgcttcagg
     2701 cggtcgaagc cgatgccgcc cgatgcttcg caatagacgg tgtgggggtg ggcggtttgc
     2761 gtgtggcagc ggtttgccgc ttctttcagg gtttcgtcgt ccatgttgtc cagcaaaatc
     2821 cgttccgcgc ccgctgcgat ggcttcgtcc agttgtgcca acgtgtccac ttcgatttct
     2881 acacaagtca acggtccgac cgcctgtttt gcctgccgca cggcttgggc gatgctgccg
     2941 caataggcga ggtggttgtc tttgacaagg atggcatcgt ccaaacccat gcggtggttc
     3001 acgccgccgc ccgccctgac ggcgtatttt tgcaggacgc gcagcagggg gatggttttg
     3061 cggctgcaca cgatgtctgt accgtatttg gcgacttcgg caacggcacg cgcggtggcg
     3121 gtggcgatgc cgcttaagtg cgtgaggtag ttgagcgcgg tgcgttcggc ggcgagcagc
     3181 gcgcaggcgt tgccttcgac ggcggcaagc gtctgacctg cgcggacgac ttgcccgtct
     3241 cggatttcgg cttggaagcg gacggacgga tccatcgtct gaaaggcgag gcgcgccaag
     3301 tccatgccgg cgataacgcc gtcttcgcgg ctgacaagga agagtttggc ggttttgtcg
     3361 ggggcgatga cggcggcgga cgtaatatcg ccgcgcctgc ccaaatcttc gctcaaggct
     3421 tgttcgacta tggggcgcaa cagggtgtcg ggtagggaaa agagggtgtt ttcagacggc
     3481 atggtgtttc ctttgttgaa aaagattgat attgcccgat ggggcaaaac ttcattttat
     3541 agtggattaa
//
LOCUS       DAXHPV010000176         3513 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.176, whole genome shotgun sequence.
ACCESSION   DAXHPV010000176 DAXHPV010000000
VERSION     DAXHPV010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3513
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.176"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..221
                     /locus_tag="ACFM6C_001866"
     CDS             <1..221
                     /locus_tag="ACFM6C_001866"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159266.1"
                     /translation="ERYWKMKEMKPVRYHIGDMPETSKQTASRHDDRAVGVDDDCFHD
                     SFGQFLFGCSAEATRTAPISVKRSCLFT"
     gene            329..1363
                     /gene="lpxK"
                     /locus_tag="ACFM6C_001867"
     CDS             329..1363
                     /gene="lpxK"
                     /locus_tag="ACFM6C_001867"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_025462052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HFC6159267.1"
                     /translation="MPNCFKFHTVIERHWQKPYPVLSFLLKPLSGLFAKIAAKRRTDF
                     LSGKRQSEKLPVPVVVVGNIHAGGTGKTPIVAALVSGLQEKGVKVGIISRGYGRKSKA
                     VHVLNAESRAEDAGDEPLLLFRKTGAPTAVGSSRAEAGRALLAAHPDIGLIVADDGLQ
                     HYALRRDVEIAVFPAADTGRTDLDLLPNGSLREPLLRLDSVDAVVVSGGKADALFRPS
                     ENMFHSRIEAGRIYRLNNPSEILDTGRLKNQTVVAVAGIAKPARFFDSLRNMGITVKR
                     TVALPDHADISAADLPDADAVIITEKDAVKFSDGICTDNVWVLPVCAIIEPDLAAFVL
                     ERLEDVPKAV"
     gene            1570..2151
                     /locus_tag="ACFM6C_001868"
     CDS             1570..2151
                     /locus_tag="ACFM6C_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2059 domain-containing protein"
                     /protein_id="HFC6159268.1"
                     /translation="MKLKTLLLPFASLALCAGAFAAPPSDASLARWLDTQNFDRDIEK
                     NMIEGFNAGFKPYADKALAEMPEEKKDQAAKAFNRYRENVLKDLITPEVKQAVRNTLL
                     KNAREIYTQEEIDGMIAFYGSPAGQSVVAKNPRLIKKSMSEIAVSWTALSGKIARHHL
                     PAFTEELRRIICGGKNPDAGCKQAGQVGKRHQK"
     gene            2220..2402
                     /locus_tag="ACFM6C_001869"
     CDS             2220..2402
                     /locus_tag="ACFM6C_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003679524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HFC6159269.1"
                     /translation="MEKKFLDILVCPVTKGRLEYHQDKQELWSRQAKLAYPIKDGIPY
                     MLENEARTLSEEELKA"
     gene            2399..3160
                     /gene="kdsB"
                     /locus_tag="ACFM6C_001870"
     CDS             2399..3160
                     /gene="kdsB"
                     /locus_tag="ACFM6C_001870"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008690 - 3-deoxy-manno-octulosonate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HFC6159270.1"
                     /translation="MTEFVVLIPARLDSSRLPRKALADIHGKPMVVRVAEQAAKSKAA
                     RVVVATDHPDIQTVCQAHGVEVVMTSNRHESGTTRLAEAAAALKLPQHLVVVNVQGDE
                     PLIAPELIDRTAEVLVENNVQMATAAHELHDFDELMNPNAVKVVLDKNRNAIYFSRAP
                     IPYLRDAMRAGKREMPSETAVLRHIGIYAYRAGFLQRYAEMSVSPLETIESLEQLRVL
                     WHGYPIAVETAKEAPAAGVDTQEDLDRVRAVFQTV"
     gene            3183..>3513
                     /locus_tag="ACFM6C_001871"
     CDS             3183..>3513
                     /locus_tag="ACFM6C_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HFC6159271.1"
                     /translation="MQQHIEKWQHLSREEQKILAEVWGLVQNDDQEVHYEMLKLNAPD
                     EASGEFWFRMAETLSTLPPNRSLDLRMNGGRLATAVSILSVMIEDNPDIPQLWAQKIT
                     ALNYSGLN"
BASE COUNT          864 a          873 c          983 g          793 t
ORIGIN      
        1 atgaaagata ctggaaaatg aaagagatga aacctgtccg ttatcatatt ggcgatatgc
       61 ccgagacttc aaaacaaacc gcctcccgtc atgacgacag ggcagtgggt gttgacgatg
      121 attgttttca tgattccttt ggtcaatttt tgtttgggtg ttcggcagag gcaacccgaa
      181 ccgcgccaat ttctgtaaag cgcagttgct tatttacctg attggttcgc ttatcggttt
      241 ggtcttcgcg ttgtttatag gtgggtctgt atcgggtacg catgattaat gccccgggct
      301 gattttgctt cgaggatttg tatcgaatat gccgaattgt ttcaaatttc ataccgttat
      361 tgaacggcat tggcaaaaac cttatccggt tttgtctttt ctgcttaagc cgctctccgg
      421 gctgtttgcc aaaattgcgg caaaacggcg gacggatttt ttatcgggaa aacggcaaag
      481 cgaaaagctg cccgtgcctg tggtcgtggt cggcaatatt cacgcgggtg ggacggggaa
      541 aacgccgatt gttgccgcgc tggtgtcggg tttgcaggaa aagggcgtca aggtcggcat
      601 catcagccgg ggctacgggc gcaagagcaa ggcggttcat gtattgaatg ctgagagccg
      661 agcggaagat gcgggcgatg agcctttgct gctgttccgc aaaaccggtg cgccgacggc
      721 ggtgggcagc agccgtgcag aggcaggcag ggcgttgctg gcggcgcatc ccgacatcgg
      781 actgattgtg gcggacgacg gtttgcagca ttacgccctg cggcgagatg tggaaatcgc
      841 ggtgtttccg gcggcggata cggggcgcac ggatttggat ttactgccca acggcagttt
      901 gcgcgaacct ttgttgcggc tggattcggt ggatgcggtc gtcgtcagcg gcggcaaggc
      961 ggatgcgctg tttaggccgt ctgaaaatat gtttcacagc cgtatcgaag cgggacggat
     1021 ttaccgtttg aacaatccgt ccgaaatact ggacacaggc cgtctgaaaa atcaaaccgt
     1081 cgtcgccgtg gcaggtattg ccaagccggc gcgttttttc gattcgttgc ggaatatggg
     1141 cattaccgtg aagcgaaccg tcgcgctgcc cgaccacgcc gacatttcgg cggcagattt
     1201 gcccgatgcg gacgcggtca ttattacgga gaaagatgcg gtcaaatttt cagacggcat
     1261 ttgcaccgat aatgtttggg tgttgcccgt ttgtgcgata atcgaacctg atttggcggc
     1321 gtttgtgttg gagcggttgg aagatgtacc gaaggccgtc tgaaagcacg gtttgggcgg
     1381 agtgattacg gatttgaata agaacgcctc gcgccgtcat tcccgcgcag gcgggaatct
     1441 aagtctcgaa ttttcaggaa tgcctaggag gcttcagaaa tcccaaatct ccggattccc
     1501 gcctgcgcag gaataatgga agccggttgt attttttatc tgcattaatc atttgttaaa
     1561 ggattggata tgaagctgaa aaccctgtta ttacctttcg cctctttggc attgtgcgcc
     1621 ggtgcatttg ccgctccgcc cagcgacgcg tcgttggcgc gttggctgga tacgcagaat
     1681 tttgaccggg atatagaaaa aaatatgatc gagggcttta atgccggatt taaaccgtat
     1741 gcggacaaag cccttgccga aatgccggaa gagaaaaaag atcaggcggc aaaagccttt
     1801 aaccgctatc gtgagaatgt tttgaaagat ttgattacgc ccgaagtgaa acaggctgtc
     1861 cgcaatactt tattgaagaa tgcccgtgag atatacacgc aagaagaaat tgacggcatg
     1921 attgcctttt acggttcgcc cgccggtcag tccgtcgttg ccaaaaatcc gcgcttaatc
     1981 aagaaatcga tgagtgaaat agcggtatct tggactgcat tgtcagggaa aatcgcgcga
     2041 catcatctgc ccgcgtttac ggaagagttg cggcgcatca tctgcggcgg taaaaatccc
     2101 gatgcgggct gtaaacaagc cggacaggtt gggaaaaggc atcagaaata aatgatagcc
     2161 gtctgaaata ttgaagaggg catccgattg attgaaccat caaacccgaa agcaacccta
     2221 tggaaaaaaa attcttagac atcctcgtct gccccgttac caaaggcagg ctggaatatc
     2281 atcaggacaa acaggaattg tggagccgtc aggcgaagct tgcctatccg attaaagacg
     2341 gcattcccta tatgctggaa aacgaagcgc gaacgttgag cgaagaggaa ctcaaagcat
     2401 gaccgaattc gtcgtattga ttccggcgcg gctggattcg tcgcgcctgc ccagaaaagc
     2461 cttggcggac atccacggca aaccgatggt cgtgcgcgtt gccgaacagg cggcaaaaag
     2521 taaagctgcg cgcgtcgttg ttgccaccga ccatcccgat attcagacgg tctgtcaggc
     2581 gcacggcgtc gaagtcgtca tgacttcaaa ccggcacgaa agcggcacga cgcgccttgc
     2641 tgaagctgcc gccgcgctga agctgccgca acatctggtc gttgtcaacg tacagggcga
     2701 cgagccgctg attgcccccg aactcatcga ccgcaccgcc gaagtactcg tcgaaaacaa
     2761 cgtccaaatg gcgaccgccg cccacgaatt gcacgatttc gacgaattga tgaatcccaa
     2821 tgccgtcaaa gtcgtcctcg acaaaaaccg caacgccatc tacttcagcc gcgccccgat
     2881 tccctatctg cgcgatgcaa tgcgtgccgg aaaacgcgaa atgccgtctg aaaccgccgt
     2941 cctgcgccat atcggcatct acgcttaccg cgccggcttc ctgcaacgct atgccgaaat
     3001 gagcgtttcg ccgctggaaa ccatcgaatc gctggaacag ctgcgcgtcc tgtggcacgg
     3061 ttatcccatt gccgtcgaaa ccgccaaaga agcccccgcc gccggtgtgg atacgcagga
     3121 agatttggat agggttcgcg ctgtatttca gaccgtataa aacaggttca aagggaaaag
     3181 atatgcagca acatattgaa aagtggcaac acttgagccg ggaagaacag aaaatccttg
     3241 ccgaagtatg gggtctcgtg caaaacgatg atcaggaggt tcactatgaa atgcttaaat
     3301 tgaacgcacc cgacgaagcc agtggcgaat tttggttcag aatggcagaa acactcagca
     3361 ccctgccgcc caaccgttcc ctcgacctta gaatgaacgg cggcaggctg gcgaccgccg
     3421 tatccatcct ttccgtcatg attgaagaca atcccgacat accgcagctt tgggcgcaaa
     3481 aaattaccgc cctcaattat agtggattaa att
//
LOCUS       DAXHPV010000177         3493 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.177, whole genome shotgun sequence.
ACCESSION   DAXHPV010000177 DAXHPV010000000
VERSION     DAXHPV010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3493)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3493)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3493
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.177"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            238..1710
                     /gene="pyk"
                     /locus_tag="ACFM6C_001872"
     CDS             238..1710
                     /gene="pyk"
                     /locus_tag="ACFM6C_001872"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0030955 - potassium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HFC6159272.1"
                     /translation="MNQTSRDLTRISHNTKIVATLGPGSNNVKLLEDMIRVGGLNVVR
                     FNFSHGTPEFHQENARIVREAAKRAGQEIAIIADLQGPKIRVGKIAGGGIELNKGETL
                     VLDAALEGEGTREAVGLDYRDLPDDVATGDVLWLDDGLLTLTVESVEGSRIITRVENS
                     HVLKSNKGINKRGGGLSAGALTEKDFRDLKTAIAIGCDYLAISFVKSAEDLHIARAKV
                     EEEMKGSTAVRPGLVSKIERVEAIENLDEIILAGDGIMVARGDLAVEVGHAAVPALQK
                     RMIRRARELRRFSITATQMMESMITNPVPTRAEVSDVANAVLDGTDAVMCSAETAVGA
                     YPFETVSQMAIICAAAEKEQDSLNGVAEQVEYPEAVSTNLAVAGGAVSVARAVHAKAI
                     VALTESGSTAFEISRHNITLPIFALTPSVSAQRRMAMYRGVRPLILATSTDHDTALNE
                     VETMLVEHNILHSGDQYIITSGSQMRESGSTNTLEVLRVK"
     gene            2020..3420
                     /locus_tag="ACFM6C_001873"
     CDS             2020..3420
                     /locus_tag="ACFM6C_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpP1/FadL family transporter"
                     /protein_id="HFC6159273.1"
                     /translation="MTPSALKKTVLLLGTAFAAASAQASGYHFGTQSVNAQSTANAAA
                     AEAADASTIFYNPAGLTKLDSSQISVNANIVLPSIHYEADSATDFTGLPVQGSKSGKI
                     TKTTVAPHIYGAYKVNDNLTVGLGVYVPFGSATEYEKDSVLRHNINKLGLTSIAVEPV
                     AAWKLNDRHSFGAGIIAQHTSAELRKYADWGIKSKADILTAKPPKPNGVAEAAKIQAD
                     GHADVKGSDWGFGYQLAWMWDINDRARVGVNYRSKVSHTLKGDAEWAADGAAAKAMWS
                     TMLAANGYTANEKARVKIVTPESLSVHGMYKVSDKADLFGDVTWTRHSRFDKAELVFE
                     KEKTVVKGKSDRTTITPNWRNTYKVGFGGSYQISEPLQLRAGIAFDKSPVRNADYRMN
                     SLPDGNRIWFSAGMKYHIGKNHVVDAAYTHIHINDTSYRTAKASGNDVDSKGASSARF
                     KNHADIIGLQYTYKFK"
BASE COUNT          898 a         1058 c          887 g          650 t
ORIGIN      
        1 gaatttccct agttatctag gacagcccca aaataaattt agcctaagtc ataaaaccgt
       61 gtaattttgc gccaaaaaag gcggtttgca ggtaaaatat caaactatta atttaaatca
      121 tatttttaca gaatattccg ccgcgttcat caaatggaca tcaaaccggt tccaaatttc
      181 tgtaattttg taacaaaata ccgcaaaaca cccgattgag accgaaagga ctttcatatg
      241 aaccagacaa gccgcgatct gacccgcatc agccacaaca ctaaaatcgt cgccaccctt
      301 gggccgggca gcaacaacgt caaactgttg gaagacatga tccgcgtcgg cggtctgaac
      361 gtcgtccgct tcaacttcag ccacggcacg cccgaattcc atcaggaaaa cgcccgcatc
      421 gtgcgcgagg cggcaaaacg cgccggacag gaaatcgcca tcattgccga cctgcaaggg
      481 ccgaaaatcc gcgtgggcaa aatcgccggc ggcggcattg aattgaacaa aggcgaaacg
      541 ctggtactgg atgccgcgct cgaaggcgaa ggcacgcgcg aggcggtcgg tttggactac
      601 cgcgatctgc ccgacgacgt tgccacaggc gatgtcttgt ggctggacga cggcctgctg
      661 accctgaccg tggaatccgt cgaaggcagc aggattatca caagggtgga aaacagccac
      721 gtcctgaaaa gcaacaaagg catcaacaaa cgcggcggcg gtctgtccgc aggcgcgttg
      781 accgaaaaag acttccgcga cctgaaaacc gcgattgcca tcggttgcga ctacctcgcc
      841 atcagctttg tgaaatccgc cgaagatttg cacatcgcgc gcgccaaagt cgaagaagaa
      901 atgaagggca gcacggccgt gcgccccggt ttggtttcca aaatcgaacg cgtagaagcg
      961 attgaaaacc ttgatgaaat catcctcgcc ggcgacggca ttatggttgc gcgcggcgac
     1021 ttggcggtcg aagtcggaca cgccgccgtc cccgccctgc aaaaacggat gatccgccgc
     1081 gcccgcgagt tgcgccgctt cagcattacg gcgacgcaaa tgatggaatc gatgattacc
     1141 aaccccgtgc cgacccgcgc ggaagtcagc gatgtggcaa acgcggtatt ggacggcacc
     1201 gatgcggtga tgtgttccgc cgaaaccgcc gtcggcgcgt atccgtttga aaccgtcagc
     1261 caaatggcga ttatctgcgc ggctgcggaa aaagagcagg attcgctcaa cggcgttgcc
     1321 gaacaggtcg agtatcccga agcggtcagc accaacctgg cggttgccgg cggtgcggtc
     1381 agcgtggcgc gcgcggttca cgccaaagcc atcgtcgccc tgaccgaaag cggttcgacc
     1441 gcctttgaaa tcagccgcca caacatcacc ctgccgattt tcgcgctgac cccgagcgtt
     1501 tccgcccaac gccgtatggc gatgtaccgg ggcgtgcgcc cgctgatttt ggcaaccagc
     1561 accgaccacg acacggcgtt aaacgaagtc gaaaccatgc tggtggaaca caacatcctg
     1621 cattccggcg accaatacat cattactagc ggctcgcaaa tgcgcgaatc cggttcgacc
     1681 aatacgctgg aagtgctgcg cgtcaaataa tccgccctga gtggaaaatg ccgtctgaag
     1741 ccgatgcccg aggcttcaga cggcattttt tgcggcggcg cggcggttcg ggcaaactct
     1801 gaaaaaattg tgcaaatccg gcaacatcgg ataaaatcga gtacctatac taaagcgaaa
     1861 caaggcattt ccgactgcct tttttatagt ggattaaatt taaaccagta cggcgttgcc
     1921 ttgccgtact atctgtactg tctgcggctt cgtcgccttg tcctgatttt tgttaatcca
     1981 ctatatttat ccaccgtccg cctttttacg gaaaccgaaa tgaccccttc cgcactgaaa
     2041 aaaaccgtcc tactgctcgg cactgccttt gccgccgcat ccgcacaagc ctccggctac
     2101 cacttcggca cacagtcggt caacgcgcaa agcacggcaa atgccgccgc cgcagaagcc
     2161 gccgacgcat cgaccatctt ctacaaccct gccggcctga ccaaactcga cagcagccag
     2221 atttccgtca acgccaacat cgtgctgccc agcattcatt atgaggcgga ttccgccacc
     2281 gactttaccg ggcttcccgt ccaaggttcg aaaagcggca aaatcaccaa aaccacggtc
     2341 gcgccccaca tctacggcgc atacaaagtc aacgacaatc tgaccgtggg cttgggcgtg
     2401 tacgtcccct tcggctccgc caccgaatac gaaaaagatt ctgtgttgcg ccacaacatc
     2461 aacaaactcg gtctgaccag catcgccgtc gaacctgtcg ccgcgtggaa actcaacgac
     2521 cgccattcct tcggcgcagg catcatcgcc caacatactt ccgccgaact gcgcaaatat
     2581 gccgactggg ggattaagag taaagcagat atattgacgg caaaaccgcc caaacctaac
     2641 ggtgtagccg aagctgcaaa aattcaggcc gacggacacg ccgatgtcaa aggcagcgat
     2701 tggggcttcg gctaccaact ggcgtggatg tgggacatca acgaccgcgc gcgcgtgggc
     2761 gtgaactacc gttccaaagt ctcgcacacg ctcaaaggcg atgccgaatg ggcggcagac
     2821 ggcgcggcgg cgaaagcaat gtggagtacg atgcttgcag caaacggcta cacggcgaat
     2881 gaaaaagccc gcgttaaaat cgttacgcct gagtctttgt ccgtacacgg catgtacaaa
     2941 gtgtccgata aagccgacct gttcggcgac gtaacttgga cgcgccacag ccgcttcgat
     3001 aaggcggaac tggtttttga aaaagaaaaa accgtcgtca aaggcaaatc cgaccgcacc
     3061 accatcaccc ccaactggcg caacacctac aaagtcggct tcggcggttc ttatcaaatc
     3121 agcgaaccgc tgcaactgcg cgccggcatc gcttttgaca aatcgcccgt ccgcaacgcc
     3181 gactaccgca tgaacagcct gcccgacggc aaccgcatct ggttctccgc cggtatgaaa
     3241 taccatatcg gtaaaaacca cgtcgtcgat gccgcctaca cccacatcca catcaacgac
     3301 accagctacc gcacggcgaa ggcaagcggc aacgatgtgg acagcaaagg cgcgtcttcc
     3361 gcacgtttca aaaaccacgc cgacatcatc ggtctgcaat acacctacaa attcaaataa
     3421 acggcccgcc gtttgaatgt aacaatgccg tctgaaacag atttccgttt cagacggcat
     3481 tgttttaggc tcg
//
LOCUS       DAXHPV010000178         3490 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.178, whole genome shotgun sequence.
ACCESSION   DAXHPV010000178 DAXHPV010000000
VERSION     DAXHPV010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3490)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3490)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3490
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.178"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            43..720
                     /locus_tag="ACFM6C_001874"
     CDS             43..720
                     /locus_tag="ACFM6C_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspH/FimT family pseudopilin"
                     /protein_id="HFC6159274.1"
                     /translation="MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASH
                     AERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTANNQCDSGKKEQGMLAFGDKNGNK
                     GYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
                     NQDLTNTSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRGDRRTR
                     RTMCQYK"
     gene            744..1358
                     /gene="pilV"
                     /locus_tag="ACFM6C_001875"
     CDS             744..1358
                     /gene="pilV"
                     /locus_tag="ACFM6C_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus modification protein PilV"
                     /protein_id="HFC6159275.1"
                     /translation="MKNNDCFRLKDSQSGMALIEVLVAMLVLTIGILALLSVQLRTVA
                     SVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKNYNLYMGNHHTLSVVDGDFQVGV
                     IKTKTQLAEAQLKRFSYELKNALPDAAAIHYAVCKDSSGAAPSLSDSGTFSQNCDGSA
                     NGDTLIKVLWVNDSAGDSDIAHTNLETNGNNIVYTYQARVGGRE"
     gene            1355..2341
                     /locus_tag="ACFM6C_001876"
     CDS             1355..2341
                     /locus_tag="ACFM6C_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilW family protein"
                     /protein_id="HFC6159276.1"
                     /translation="MRRKMLNVPKGNYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFT
                     SRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFGCFNMSEHIGSDVVSNVAQKNPL
                     FSLKRNSTNKLIPITESLNIGYPGFTQRLNALIFQYGIDDVNASADTTVVSSCAKIAK
                     PGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLNDDGQ
                     WGNPQLLVKKINKMDIRYIYLLVENPGIPPTNSPRYIYGCPEDDDAGKEETFKYTDTF
                     NSSTNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL"
     gene            2320..2913
                     /locus_tag="ACFM6C_001877"
     CDS             2320..2913
                     /locus_tag="ACFM6C_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilX N-terminal domain-containing pilus assembly
                     protein"
                     /protein_id="HFC6159277.1"
                     /translation="MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNT
                     EQRISANESDRKLALSLAEAALREGELQVLDLEYDTDSKVTFSENCGKGLCTAVNVRT
                     NNDNEEAFDNIVVQGKPTVEAVKRSCTANSTDLCIDNKGMEYKKGKGSVSKPPRYIIE
                     YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE"
     gene            2918..3415
                     /locus_tag="ACFM6C_001878"
     CDS             2918..3415
                     /locus_tag="ACFM6C_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilX family type IV pilin"
                     /protein_id="HFC6159278.1"
                     /translation="MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTE
                     MVGINNTVKQIILKNPQDSNDILNIKLTKFVSGYKMNPKIAEKYSVSGEFVDAPKSRA
                     NRALKSRAYRLVGVPKAGTGYTLSVWVNSVGDGYKCRDAASARAHLETLSADAGCEAF
                     SNRKK"
BASE COUNT         1001 a          697 c          875 g          917 t
ORIGIN      
        1 aatttaatcc acgatacatt accagttaac gttctattgc ttatgtgtac acgaaaacaa
       61 caaggtttca cgctaacaga gctgctcatc gtgatggtca ttgcagccat tatggcgatg
      121 atagccctcc ccaatatgag ccaatggatt gcatcccgcc gcattgccag tcacgcggag
      181 cggattgcca accttttgcg tttctccagg ggcgaagccg tccggctcaa tctccctgtc
      241 tatatctgtc ctgttcaagt taaaaaagac ggtacggcca acaatcaatg tgactccggc
      301 aagaaggagc agggaatgtt ggctttcggc gacaaaaacg gcaataaggg atatgacaat
      361 gatacggcgg atgttcttct ccgcagtgtg gtattgaatg atgatatcaa tgataagcgg
      421 attaattatg ccttcaacca tatcgctttc ggtcagactc agccgaccgc tgaccgtgta
      481 gtttggacat tcaatcaaaa cgggacgttc ggttattcta ccaatcagga tctcacgaat
      541 acttccaaat ttgtttactc cgacggttat atccaaatcg tgctgacaga tgcgagagca
      601 gtttcagatg ccgataagaa attccgttcg gcggtggttt tgattgacag cagcggcagg
      661 gtcgaagttt gccctagggg tgatcggcgt actcggcgta ctatgtgcca gtataaataa
      721 cagtttcagt tttaaaaatg aatatgaaga ataatgattg cttccgcctg aaagattccc
      781 agtccggtat ggcgctgata gaagtcttgg ttgctatgct cgttctgacc atcggtattt
      841 tggcgttact gtctgtgcag ttgcggacag tcgcttccgt cagggaggcg gagacacaaa
      901 ccatcgtcag ccaaatcacg caaaacctga tggaaggaat gttgatgaat ccgaccattg
      961 attcggacag caacaagaaa aactataatc tttacatggg aaaccatcat acactatcag
     1021 ttgtggatgg cgattttcag gttggtgtca taaaaactaa gacgcagttg gcagaggcac
     1081 aattgaagag atttagttat gagctgaaaa atgccttgcc ggatgcggca gccatccatt
     1141 acgccgtctg caaggattcg tcgggtgctg cgccgtcatt gtccgacagc ggtacttttt
     1201 ctcaaaattg cgatggtagt gcaaatgggg atactttgat taaagtattg tgggtaaatg
     1261 attcggcagg ggattcggat attgcacata cgaatcttga gacgaacggc aacaatatcg
     1321 tatataccta tcaggcaagg gtcggaggtc gggaatgaga cgtaaaatgc taaacgtacc
     1381 aaaaggcaat tatgatggta tgaagggttt taccattatt gaatttttgg ttgcgggcat
     1441 gctcagtatg attgtcctga tggcggtcgg atcgagttac ttcacgtccc ggaaattaaa
     1501 tgatgcggca aacgagcgtc ttgctattca acaggatttg cggaatgcgg caacattaat
     1561 tgtccgcgat gcaagaatgg cggggagctt cggttgtttc aatatgtctg agcatatcgg
     1621 aagtgatgtt gtttccaatg tggcgcaaaa aaaccctctt ttttccttaa aaaggaacag
     1681 tacaaataaa cttatcccca taacggaatc tttaaatatc ggatatccgg gttttaccca
     1741 gcgccttaac gcattgattt tccaatacgg aatcgatgat gttaatgcaa gcgccgatac
     1801 taccgtcgtc agcagctgtg ccaaaatagc aaaaccgggt aagaaaatat ctaccttgca
     1861 agaagcaaag agtgcattac agattactaa tgatgataaa caaaatggaa atatcacccg
     1921 tcaaaggcat gtggtcaatg cctatgcggt cggcaggatt gccggtgagg aaggtttgtt
     1981 ccgcttccaa ttgaatgatg atgggcagtg gggcaatcct cagttgttgg ttaaaaagat
     2041 taataaaatg gatatacggt atatctatct tctcgtggaa aatcctggta taccgcctac
     2101 caattctccc cggtatattt acggttgccc tgaagatgac gatgccggca aagaggaaac
     2161 attcaaatat acggatacat tcaacagctc cacaaatgct gttacgcccg ccggggtgga
     2221 ggttttattg agtagcggta ctgataccaa gattgccgct tcttcagaca atcatattta
     2281 tgcttaccgt atcgatgcga caatacgcgg gggaaatgta tgcgcaaaca gaacactttg
     2341 acgggaatcc cgacttctga cggacagagg gggtttgcac tgtttatcgt gctgatggtg
     2401 atgatcgtcg tggctttttt ggttgtaact gccgcgcagt cttacaatac cgagcagcgg
     2461 atcagtgcca acgaatcaga caggaaattg gctttgtctt tggccgaggc ggctttgcgg
     2521 gaaggcgaac ttcaggtttt ggatttggaa tatgatacgg acagtaaggt tacatttagc
     2581 gaaaactgtg gaaaaggtct gtgtaccgca gtgaatgtgc ggacaaataa tgataatgaa
     2641 gaggcttttg acaatatcgt ggtgcaaggc aagcccaccg ttgaggcggt gaagcgttct
     2701 tgcactgcaa attctaccga cctgtgcatt gacaataaag ggatggaata taagaaaggc
     2761 aagggaagtg tcagcaaacc accacgctat attatcgaat atttgggcgt gaagaacgga
     2821 gaaaatgttt atcgggttac tgccaaggct tggggtaaga atgccaatac cgtggtcgtc
     2881 cttcaatctt atgtaagcaa taatgatgag taataaaatg gaacaaaaag ggtttacatt
     2941 gattgagatg atgatagtcg tcgcgatact cggcatcatc agcgtcattg ccataccttc
     3001 ttatcaaagt tatattgaaa aaggctatca gtcccagctt tatacggaga tggtcggtat
     3061 caacaatact gtcaaacaga ttattttgaa aaatccacag gatagtaatg atatcctcaa
     3121 tataaaactg acaaagtttg tctcaggcta taagatgaat ccgaaaattg ccgaaaaata
     3181 tagtgtttcg ggggaatttg tcgatgcgcc aaaatcaagg gcaaacaggg cgttaaaatc
     3241 aagggcatac aggttggtcg gcgttccgaa ggcagggacg ggttatactt tgtcggtatg
     3301 ggtaaacagc gtgggcgacg gatacaaatg ccgtgatgcc gcttctgccc gagcccattt
     3361 ggagaccttg tccgcagatg ccggctgtga agccttctct aatcgtaaaa aataaggttg
     3421 ttttgccgat gccgtctgaa aatcaatgtt cagacggcat ttttatgggt atagtggatt
     3481 aacaaaaatc
//
LOCUS       DAXHPV010000179         3483 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.179, whole genome shotgun sequence.
ACCESSION   DAXHPV010000179 DAXHPV010000000
VERSION     DAXHPV010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3483
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.179"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(214..1278)
                     /locus_tag="ACFM6C_001879"
     CDS             complement(214..1278)
                     /locus_tag="ACFM6C_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HFC6159279.1"
                     /translation="MEKEFRILNIVSAKIWGGGEQYVYDVSKALGLRGCTMFTAVNKN
                     NELMHRRFSEVSSVFTTRLHTLNGLFSLYALTRFIRKNRISHLMIHTGKIAALSILLK
                     KLTGVRLIFVKHNVVANKTDFYHRLIQKNTDRFICVSRLVYDVQTADNPFKEKYRIVH
                     NGIDTGRFPPSQEKPDSRFFTVAYAGRISPEKGLENLIEACVILHRKYPQIRLKLAGD
                     GHPDYMCRLKRDVSASGAEPFVSFEGFTEKLASFYRQSDVVVLPSLVPEAFGLSLCEA
                     MYCRTAVISNTLGAQKEIIEHHQSGILLDRLTPESLADEIERLVLNPETKNALATAGH
                     QCVANRFTINHTADKLLDAI"
     gene            complement(1279..2037)
                     /locus_tag="ACFM6C_001880"
     CDS             complement(1279..2037)
                     /locus_tag="ACFM6C_001880"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFC6159280.1"
                     /translation="MKKVSVLIVARNEANHIRECIESCRFDKEVIVIDDYSTDNTAEI
                     AESLGAKVFRRHLNGDFGAQKTFAIEQAGGEWVFLIDADERCTPELSDEISKIVQTGD
                     YAAYFVERRNLFPNHPATHGAMRPDSVCRLMPKKDSSVQGKVHETVQTPYPKRRLKHF
                     MYHYTYDNWEQYFNKFNKYTSISAEKYREQGKPVRFVRDIILRPIWGFFKIYILNKGF
                     LDGKMGWIMSVNHSYYTMIKYVKLYYLYKSGGKF"
     gene            complement(2112..2187)
                     /locus_tag="ACFM6C_001881"
     tRNA            complement(2112..2187)
                     /locus_tag="ACFM6C_001881"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2152..2154),aa:Ile,seq:cat)
     gene            complement(2241..3377)
                     /locus_tag="ACFM6C_001882"
                     /pseudo
     CDS             complement(2241..3377)
                     /locus_tag="ACFM6C_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247614.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
     gene            complement(3322..>3483)
                     /locus_tag="ACFM6C_001883"
     CDS             complement(3322..>3483)
                     /locus_tag="ACFM6C_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HFC6159281.1"
                     /translation="IHYRINHSKEFADRQNHINGIENFWNQAKRVLRKYSGLARTFPR
                     IGSATGCAD"
BASE COUNT          780 a          849 c          929 g          925 t
ORIGIN      
        1 tctactatac attgtaacaa agcacttgat gcggcagcac aagccgggga agacgctgca
       61 aaactttgcc aataggctgc gtaatatcgg gggatattgg gattttctta tttttaagga
      121 tggattcggg gtgtttcttt ccaatgaacg aatataattt ggcggtttgt tgcatcaaag
      181 gctttcagac ggcatatgcc gtctgaaagc agtttatatt gcatccaata atttgtcggc
      241 ggtatggttg atggtaaaac ggttggcgac gcattgatgt cctgccgttg ccagtgcgtt
      301 tttcgtttca gggttcaaga cgaggcgttc gatttcgtcc gccaaagatt caggtgtcag
      361 cctgtccagc agaatccccg attgatgatg ttcgataatt tccttttgcg cccccaaagt
      421 attggaaatc accgccgttc ggcagtacat cgcctcgcat aatgacaaac cgaatgcctc
      481 cgggacgagg ctgggcaaaa ccacgacatc gctttggcgg taaaacgaag caagtttttc
      541 ggtaaaccct tcaaaagaaa caaatggttc tgctcctgaa gcagatacgt cccgcttcag
      601 gcggcacata taatccggat gtccgtcccc tgccaatttg agcctgattt gaggatattt
      661 ccgatgcagt atcacacagg cttcaatcag gttttccaat cctttttctg gactgatcct
      721 gccggcgtag gcgacggtaa aaaaacggct gtcgggtttt tcttgagagg gagggaaacg
      781 gccggtatcg ataccgttat gaacaatccg gtatttttct ttaaagggat tgtcggcggt
      841 ttgcacatcg taaaccagac gggaaacgca aataaagcgg tcggtgtttt tctgtatcag
      901 gcggtgataa aaatcggttt tgttggcgac gacattatgt ttgacaaata tcaggcgcac
      961 tccggtcagt tttttcaaaa gtatggataa ggcggcaatt ttgccggtgt gtatcatcag
     1021 gtgggaaatg cggtttttcc ggataaagcg ggtaagtgcg tagagcgaaa acagcccgtt
     1081 gagcgtgtga aggcgtgtcg tgaaaacgga agaaacttcg gaaaagcgtc tgtgcatcaa
     1141 ctcattattt ttattgacgg cggtaaacat cgtgcagccc cgcagtccca atgcttttga
     1201 aacatcatag acatattgtt cgcccccgcc ccaaatcttg gccgatacga tatttaatat
     1261 cctgaattct ttttccattt aaaattttcc gccggatttg tacagataat atagtttgac
     1321 atatttaatc atcgtgtaat agctgtggtt gacggacata atccaaccca ttttcccatc
     1381 gagaaaccct ttgttcagga tataaatttt gaaaaaaccc caaatcggac ggaggataat
     1441 gtccctaacg aaacgcacgg gctttccctg ctctcggtat ttctcggctg agatggaagt
     1501 gtatttgttg aatttgttga aatattgttc ccagttgtcg tatgtgtaat ggtacataaa
     1561 atgcttcaga cggcgtttgg ggtagggggt ttgtacggtt tcgtgtactt tgccttgcac
     1621 cgaactgtct tttttcggca tcaaacggca tacgctgtcg ggacgcatcg cgccgtgtgt
     1681 ggcgggatgg ttggggaaaa ggttgcggcg ttcgacaaaa taggcggcat aatcgccggt
     1741 ttggacaatt tttgagattt catcagatag ttccggcgtg cagcgttcgt ctgcatcaat
     1801 caggaaaacc cattccccgc ctgcctgttc gatggcaaat gttttttgcg ctccgaaatc
     1861 cccgttcaaa tgccgtctga agacttttgc gcccaaactc tcggcaattt cggcagtatt
     1921 gtcggtgctg tagtcgtcga taacgatgac ttctttatcg aaacggcaac tttcaataca
     1981 ttcccgaatg tggtttgctt catttctagc aacaatcaat acgctgactt ttttcatcat
     2041 caaggtttct caaagcattt tggtttcaca gggcggcaaa aaagcccaaa catacgtccg
     2101 ggcttgggaa ttggtgggtc cggtggggtt cgaacccacg accaagggat tatgagtccc
     2161 ctgctctaac ccctgagcta cagacccgtc aagagtaggc gcgtattgta tagcatagcg
     2221 gtgggattga caaacttatt tcatccgatg agtaaaacgc agttgcttcc cccaaaggca
     2281 aacgacgagc tggcggcaat gcgtttttcg gtttcccagc ggctgccgct gccggtcagg
     2341 ttgatggcgg gcaggtcggg gtcgttctgc ccgtcccaaa gctggggcgg aagtttccct
     2401 tcgggattgc tttgccggtc ggcaatgccc cacgcgaacg cggcttcgat tgcgcccgcc
     2461 gcgcccagcg tgtgtccggt ttgcggcttg gtggacgtgc agggcgtatt gttgccgaaa
     2521 accgctgcaa cggcgcggct ttccatactg tcgttgtggt gcgtcccggt gccgtgcagg
     2581 ttaatccagc cgatgtcttc gggcgcaaga cctgcgtgtt gcaatgccgt ctgaaaggcg
     2641 aggattgcgc cttgagcgtc ggggcgcggc gtggaaatat ggtaggcatc gctgttggct
     2701 ccgtagccga cgagttcggc gtaaattatc gcaccgcgcc gtttggcgtg ttccaattct
     2761 tccagcacga aaatccccgc gccttcgccg atgaccagcc cgtcgcggtt cgcgtcgtat
     2821 gggcgcgggg ttttttccgg ttcgccgttg cggcggctgg cggcataaag cgagtcgaaa
     2881 acatacactt cggacgggaa aaattcttcg cctccgcccg ccagcatcat atcggtcaga
     2941 ccgtatttga tggcttcgta ggcataacct atgccttggc tgccggacga acacgcgctc
     3001 gatgtcggga tgatgcgtcc tttcagcccg aaaaagatgc cgatattggc ggcggcggtg
     3061 tgcggcatca tacgcacata ggtgttggca ctgaagttgc gcgacatgcc ggtcagcaac
     3121 aattcgccta catcgccgat gtctttggtg ctgccgctgg aagagccgca ggcaacgccc
     3181 atccgtccgt cggtaatgct ttcgtccccg agcaaaccgg catccgtcaa agcctgctcc
     3241 gccgcatcga cgcacaaata cgacacgcgc tctatacttc tgagctgttt gcgcgtccaa
     3301 tgtttcggcg gcgcgtaatt ttcaatcggc gcacccagtt gcgcttccaa ttcggggaaa
     3361 cgttcgcgcc aatccactat attttcgcaa gacgcgtttt gcctgattcc aaaaattctc
     3421 aatgccgtta atgtggttct gacggtctgc aaactccttg gaatggttga tgcggtaatg
     3481 gat
//
LOCUS       DAXHPV010000180         3482 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.180, whole genome shotgun sequence.
ACCESSION   DAXHPV010000180 DAXHPV010000000
VERSION     DAXHPV010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3482)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3482)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3482
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.180"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            443..>3482
                     /gene="pilC"
                     /locus_tag="ACFM6C_001884"
     CDS             443..>3482
                     /gene="pilC"
                     /locus_tag="ACFM6C_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilC family type IV pilus tip adhesin"
                     /protein_id="HFC6159282.1"
                     /translation="MNKTLKRRVFRHTALYAAILMFSHTGGGGAQAQTRQYAIIMNEG
                     NQPEVQWNGSYSIKDKDRKREYTHHNHSRGGSSVSFNNSDELVSQQSGTAVFGTATYL
                     PPYGKVSGFDADGLNKRGNAAGWIRTTRIALAGYSYEGVVCRSGTGCPKLVYKTRFSF
                     DNPDLVKNAGRLDRHTDPSRENSPIYKLKDYPWLGVSFNLGAEGTTKDGKTINKLVSS
                     FDEKNSSNNNLVYTTEGRDISLGDWQREKTAMAYYLNAKLHLLDKKGIKDITNKTVQL
                     GVLRPSIDVRLQRNTGLAGLLNFWASWDIKDNGQIPVKLGLPEVKAGRCINANNPNKS
                     TKAPSPALTAPALWFGPVQNGKMEMYSASVSTYPDSSSSRIFLQNLKRKNDPNKPGRY
                     SLATLNKSDIESREPTFTGRQTVIRLDKGVHQIKLKGNEVEDFKGNNGNDTFGIVSEG
                     SFMPDDSEWKKVLLPWTVRGVNDDQFKTFNKEEKNGKPKYSQKYRSRDNGKHERNLGD
                     IVNSPIVAVGEYLATSANDGMVHIFKKGNGDARNYSLKLSYIPGTMPRKDIESKDSTL
                     AKELRAFAEKGYVGDRYGVDGGFVLREVERGGKKHVFMFGAMGFGGRGAYALDLTKAD
                     SNNPTAVSLFDVKNDKNKGNNSAELGYTVGTPQIGKTHDGKYAAFLASGYATKTIDDQ
                     QNKTALYVYDLESSGTLIKKIDVPGGKGGLSSPTLVDKDLDGTVDIAYAGDRGGKMYR
                     FDLSSQSPDQWTVRPIFEGTKPITSAPAVSKLKDKRVVIFGTGSDLSEDDVDKKDIQS
                     IYGIFDNDTGTDVAEEGQGKGLLEQVLSEENKTLFLTDYKRSDGSGSKGWVVKLEAGQ
                     RVTVKPTVVLRTAFVTIRKYTDNGCGAETAILGINTADGGKLTKKSARPIVPAANSKV
                     AQYSGHKKTSSGKSIPIGCMQKGNEIVCPNGYVYDKPVNVRYLDEKKTDGFSTTADGD
                     AGGSGIDPDGKRAGKNNRCFSQKGVRTLLMNDLDSLDITGP"
BASE COUNT          967 a          890 c          935 g          690 t
ORIGIN      
        1 gcaccgacag gtctggattc ccgctttcgc ggcaatggcg ggccaaggag gcggttgcgg
       61 attgccgaaa accgctttac catgatcagc gcgcaagggt agaataatgc ggtaacccta
      121 tacattgcat ccggccaaag gggcgcgtta cctttgcgaa catccccctt tggcagccgg
      181 gcgaaggggg ctttgcaacc agcaattcgg cgggcgcgga atcgggcggt ttgccgaatc
      241 ccgccgtttg cggcgcgcct gccgccgacg gtatcccgcg aagcaagatt taagggataa
      301 aatatgttcc aacacacagg gcggcacata aggcgccgcc ctgattcgga agggcttgca
      361 cccctcccgg acaaagcctg atcctgccgc cccgaaggac ggatgcccga agggcggggg
      421 gtttgaccga aaaggaaata cgatgaataa aactttaaaa aggcgggttt tccgccatac
      481 cgcgctttat gccgccatct tgatgttttc ccataccggc gggggggggg cgcaggcgca
      541 aacccgtcaa tacgctatta tcatgaacga gggaaaccag cccgaggtac agtggaatgg
      601 gtcatattca ataaaggaca aagacaggaa gcgcgaatat actcatcata atcactcacg
      661 aggaggaagc tctgtctcat tcaacaatag cgatgagctt gtttctcaac aaagcggtac
      721 tgccgttttt ggcacagcca cctacctgcc gccctacggc aaggtttccg gttttgatgc
      781 cgacgggctg aacaagcgcg gcaatgccgc cggttggatt cgtaccaccc gcatcgcgct
      841 ggcaggctac agctacgaag gtgtcgtatg cagaagcggc acaggctgtc ccaaacttgt
      901 ctataaaacc cgattttcct tcgataatcc cgacttggta aaaaatgcgg gcaggctgga
      961 taggcacaca gacccaagcc gcgaaaattc gcccatttac aaattgaagg attatccatg
     1021 gttgggcgta tctttcaatt tgggtgccga gggtaccacc aaagatggta agacaatcaa
     1081 caaattggta tcttcttttg atgaaaagaa tagtagtaat aacaacctcg tctataccac
     1141 ggaaggccgc gatatttcct tgggcgactg gcagcgcgaa aagaccgcca tggcctatta
     1201 tctgaacgcc aaactgcacc tgctggacaa aaaagggatt aaagatatca ccaacaaaac
     1261 agtgcagttg ggtgtcttga ggccgagcat cgatgtgcgg ctgcaaagaa atacggggct
     1321 tgccggcttg ctaaattttt gggctagttg ggacattaaa gataacgggc agattccggt
     1381 caagctcggc ctgccggaag tcaaagcagg ccgctgcatc aacgcaaata accccaataa
     1441 gagtaccaaa gccccttccc ccgcactgac tgcccccgcg ctgtggttcg gacctgtgca
     1501 aaatggtaag atggagatgt attccgcttc ggtttctacc taccccgaca gttcgagcag
     1561 ccgcatcttc cttcaaaatc tgaaaagaaa aaacgacccc aacaaacccg gccgctattc
     1621 cctcgcaacc ttgaataagt cggatattga aagtcgagag ccgactttca cagggcggca
     1681 aaccgtcatc cgattggata aaggcgtaca tcagatcaaa cttaaaggca atgaggtcga
     1741 agattttaag ggaaacaacg gcaacgacac tttcggcatt gttagtgaag ggagcttcat
     1801 gcctgatgac agcgagtgga aaaaagtgct gctgccttgg acggttcggg gtgtcaatga
     1861 cgatcaattt aaaacattca acaaagaaga aaaaaacggc aagccaaaat acagtcaaaa
     1921 ataccgcagc cgcgacaacg gcaagcacga gcgcaatttg ggcgacatcg tcaacagccc
     1981 catcgtggcg gtcggcgagt atttggctac ttccgccaac gacgggatgg tgcatatctt
     2041 caaaaaaggc aacggggacg cgcgcaacta tagtctgaag ctcagctaca tccccggcac
     2101 gatgccgcgc aaggatattg aaagcaaaga ctccaccctt gccaaagagc tgcgcgcctt
     2161 tgccgaaaaa ggctatgtgg gcgaccgcta cggcgtggac ggcggctttg tcttgcgcga
     2221 agtcgaacgg ggcgggaaaa aacacgtgtt tatgttcggc gcgatgggct ttggcggcag
     2281 aggcgcatac gccttggatt tgaccaaagc cgacagcaat aacccgaccg ccgtttccct
     2341 gtttgatgtc aaaaatgaca aaaataaagg caataatagt gcagaattag gctacaccgt
     2401 cggcacaccg caaatcggca aaacccacga cggcaaatac gccgctttcc tcgcctccgg
     2461 ttatgcgact aaaaccattg acgaccaaca aaataaaacc gcgctgtatg tgtatgattt
     2521 ggaaagcagc ggtacgctga ttaaaaaaat cgatgtaccc ggcggcaagg gcgggctttc
     2581 gtcccccacg ctggtggata aagatttgga cggcacggtc gatatcgcct atgccggcga
     2641 tcgcggcggg aaaatgtacc gctttgattt gagcagtcaa agtcctgatc aatggactgt
     2701 acgccctatt tttgaaggca caaaaccgat tacttccgcg cccgccgttt ccaaactgaa
     2761 agacaaacgc gtggttatct tcggcacggg cagtgatttg agtgaggatg atgttgataa
     2821 aaaggatata caatctattt acggtatttt tgacaatgac acaggcacgg atgtggcaga
     2881 agaaggacag ggcaaagggt tgctcgagca agtgcttagt gaggaaaata aaaccttatt
     2941 cctgaccgat tacaagcgat ccgacggatc gggcagcaaa gggtgggtag tgaaattgga
     3001 agccggacag cgcgttaccg tcaaaccgac cgtggtattg cgtaccgcct ttgtaaccat
     3061 ccgcaaatat actgacaacg gctgcggcgc ggaaaccgcc attttgggca tcaataccgc
     3121 cgacggcggc aagctgacca agaaaagcgc gcgcccgatt gtgccggcag ccaattcgaa
     3181 ggtcgcgcaa tattccggcc ataagaaaac ttccagcggc aaatccatcc ctataggttg
     3241 tatgcaaaaa ggcaatgaaa tcgtctgccc gaacggatat gtttacgaca aaccggttaa
     3301 tgtgcgttat ctggatgaaa agaaaacaga cggattttca acaacggcag acggtgatgc
     3361 gggcggcagc ggtatagacc ccgacggcaa gcgtgccggc aaaaacaacc gctgcttctc
     3421 ccaaaaaggg gtgcgcaccc tgctgatgaa cgatttggac agcttggaca ttaccggccc
     3481 ga
//
LOCUS       DAXHPV010000181         3432 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.181, whole genome shotgun sequence.
ACCESSION   DAXHPV010000181 DAXHPV010000000
VERSION     DAXHPV010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3432
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.181"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     regulatory      65..168
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            234..1457
                     /gene="cytX"
                     /locus_tag="ACFM6C_001885"
     CDS             234..1457
                     /gene="cytX"
                     /locus_tag="ACFM6C_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003519479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydroxymethylpyrimidine transporter
                     CytX"
                     /protein_id="HFC6159283.1"
                     /translation="MSGNASSPSSSSAIGLIWFGAAVSIAEISTGTLLAPLGWQRGLA
                     ALLLGHAVGGALFFAAAYIGALTGRSSMESVRLSFGKRGSVLFSVANMLQLAGWTAVM
                     IYAGATVSSALGKVLWDGESFVWWALANGALIVLWLVFGARKTGGLKTVSMLLMLLAV
                     LWLSAEVFSTAGSTAAQVSDGMSFGTAVELSAVMPLSWLPLAADYTRHARRPFAATLT
                     ATLAYTLTGCWMYALGLAAALFTGETDVAKILLGAGLGAAGILAVVLSTVTTTFLDAY
                     SAGASANNISARFAETPVAVGVTLIGTVLAVMLPVTEYENFLLLIGSVFAPMAAVLIA
                     DFFVLKRREEIEGFDFAGLVLWLAGFILYRFLLSSGWESSIGLTAPVMSAVAIATVSV
                     RLFFKKTQSLQRNPS"
     gene            1454..2554
                     /locus_tag="ACFM6C_001886"
     CDS             1454..2554
                     /locus_tag="ACFM6C_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HFC6159284.1"
                     /translation="MTRIAILGGGLSGRLTALQLAEQGYQIALFDKGCRRGEHAAAYV
                     AAAMLAPAAEAVEATPEVVRLGRQSIPLWRGIRCRLNTHTMMQENGSLIVWHGQDKPL
                     SSEFVRHLKRGGVADDEIVRWHADDIAEREPQLGGRFSDGIYLPTEGQLDGRQILSAL
                     ADALDELNVPCHWEHECVPEGLQAQYDWLIDCRGYGAKTVWNQSPEHTSTLRGIRGEV
                     ARVYTPEITLNRPVRLLHPRYPLYIAPKENHVFVIGATQIESESQAPASVRSGLELLS
                     ALYAVHPAFGEADILEIATGLRPTLNHHNPEIRYSRKRRLIEINGLFRHGFMISPAVT
                     AAAVRLAVALFDGKDAPERDEESGLAYIRRQD"
     gene            2575..3192
                     /gene="thiE"
                     /locus_tag="ACFM6C_001887"
     CDS             2575..3192
                     /gene="thiE"
                     /locus_tag="ACFM6C_001887"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HFC6159285.1"
                     /translation="MTFPPLKSPLKFYAVVPTADWVGRMVKAGADTVQLRCKALHGDE
                     LKREIARCVAACQGSRTQLFINDHWHEAIEAGAYGVHLGQEDMDTADLAAIAAAGLRL
                     GLSTHSVAELDRALSVHPSYVASGAIFPTTTKQMPTAPQGLDKLCEYVKQAGGTPVVA
                     IGGIDLNNAQAVLATGVSSLAVVRAVTEAANPEAVVKAFQALWDG"
BASE COUNT          690 a         1072 c          954 g          716 t
ORIGIN      
        1 aatgcgccgt gccgcctgaa atgtaagatt tttgccaacg ccccctgctt ttgtgtacac
       61 ttaaagctcc ttgtcggagt gccgccgccg ggcggctgag attgcgaaag cagaatccgt
      121 agaacctgtc ggggtaatgc ctgcgtagga aacaaaacct ccccgccctt tcgggcttcc
      181 gttccctttt ccgcacttcc ccgccccatt ttcatgtttt ttaaggactt gatatgtcgg
      241 gcaatgcctc ctctccttca tcttcctccg ccatcgggct gatttggttc ggcgcggcgg
      301 tatcgattgc cgaaatcagc acgggtacgc tgcttgcgcc tttgggctgg cagcgcggtc
      361 tggcggctct acttttgggt catgccgtcg gcggcgcgct gttttttgcg gcggcgtata
      421 tcggcgcact gaccggacgc agctcgatgg aaagcgtgcg cctgtcgttc ggcaaacgcg
      481 gttcagtgct gttttccgtg gcgaatatgc tgcaactggc cggctggacg gcggtgatga
      541 tttacgccgg cgcaacggtc agctccgctt tgggcaaagt gttgtgggac ggcgaatctt
      601 ttgtctggtg ggcattggca aacggcgcgc tgattgtgct gtggctggtt ttcggcgcac
      661 gcaaaacagg cgggctgaaa accgtttcga tgctgctgat gctgttggcg gttctgtggc
      721 tgagtgccga agtcttttcc acggcaggca gcaccgccgc acaggtttca gacggcatga
      781 gtttcggaac ggcagtcgag ctgtccgccg tgatgccgct ttcctggctg ccgcttgccg
      841 ccgactacac gcgccacgcg cgccgcccgt ttgcggcaac cctgacggca acgctcgcct
      901 acacgctgac cggctgctgg atgtatgcct tgggtttggc agcggcgttg ttcaccggag
      961 aaaccgacgt ggcaaaaatc ctgctgggcg caggtttggg tgcggcaggc attttggcgg
     1021 tcgtcctctc caccgttacc acaacgtttc tcgatgccta ttccgccggc gcgagtgcga
     1081 acaacatttc cgcgcgtttt gcggaaacac ccgtcgctgt cggcgttacc ctgatcggca
     1141 cggtgcttgc cgtcatgctg cccgttaccg aatatgaaaa cttcctactg cttatcggct
     1201 cggtatttgc gccgatggcg gcggttttga ttgccgactt tttcgtcttg aaacggcgtg
     1261 aggagattga aggctttgac tttgccggac tggttctgtg gcttgcgggc ttcatcctct
     1321 accgcttcct gctctcgtcc ggctgggaaa gcagcatcgg tctgaccgcc cccgtaatgt
     1381 ctgccgttgc cattgccacc gtatcggtac gccttttctt taaaaaaacc caatctttac
     1441 aaaggaaccc gtcatgaccc gtatcgccat cctcggcggc ggcctctcgg gaaggctgac
     1501 cgcactgcag cttgcagaac aaggttatca gattgcactt ttcgataaag gctgccgccg
     1561 gggcgaacac gccgccgcct atgttgccgc cgccatgctc gcgcctgcgg cggaagcggt
     1621 cgaagccacg cctgaagtgg tcaggctggg caggcagagc atcccgcttt ggcgcggcat
     1681 ccgatgccgt ctgaacacgc acacgatgat gcaggaaaac ggcagcctga ttgtgtggca
     1741 cgggcaggac aagccattat ccagcgagtt cgtccgccat ctcaaacgcg gcggcgtagc
     1801 ggatgacgaa atcgtccgtt ggcacgccga cgacatcgcc gaacgcgaac cgcaactcgg
     1861 cggacgtttt tcagacggca tctacctgcc gaccgaaggc cagctcgacg ggcggcaaat
     1921 attgtctgca cttgccgacg ctttggacga actgaacgtc ccctgccatt gggaacacga
     1981 atgcgtcccc gaaggcctgc aagcccaata cgactggctg atcgactgcc gcggctacgg
     2041 cgcaaaaacc gtgtggaacc aatcccccga acacaccagc accttgcgtg gcatacgcgg
     2101 cgaagtggcg cgggtttaca cacccgaaat cacgctcaac cgccccgtgc gcctgctgca
     2161 cccgcgttat ccgctctaca tcgccccgaa agaaaaccac gtcttcgtca tcggcgcgac
     2221 ccaaatcgaa agcgaaagcc aagcccccgc cagcgtgcgt tcagggttgg aactcttgtc
     2281 cgcactctat gccgtccacc ccgccttcgg cgaagccgac atcctcgaaa tcgccaccgg
     2341 cctgcgcccc acgctcaacc accacaaccc cgaaatccgc tacagccgca aacgccgcct
     2401 catcgaaatc aacggccttt tccgccacgg tttcatgatc tcccccgccg taaccgccgc
     2461 cgccgtcaga ttggcagtgg cactgtttga cggaaaagac gcgcccgaac gtgatgaaga
     2521 aagcggtttg gcgtatatcc gaagacaaga ttaaagccgt ctgaaaggaa ccccatgacc
     2581 ttcccgccac tcaaatcccc gctcaaattc tacgccgtcg tccccaccgc cgattgggtg
     2641 gggcgcatgg tcaaagcagg tgccgacacg gtgcaactgc gctgcaaggc cctgcacggc
     2701 gatgaattga aacgcgaaat cgcccgctgt gtcgccgcct gtcagggcag ccgtacgcag
     2761 cttttcatca acgaccactg gcacgaagcg atagaagcag gcgcgtacgg cgtgcatctc
     2821 ggacaagaag acatggacac cgccgacctt gccgccatag ccgccgccgg tttgcgcttg
     2881 ggtttgagta cgcactccgt tgccgaactc gaccgcgccc tgtccgtaca ccctagctac
     2941 gtcgccagcg gcgcgatttt cccgaccacg accaagcaaa tgcccaccgc cccgcaaggc
     3001 ttggacaaac tgtgcgagta tgtgaaacag gcaggcggca cgcccgtcgt cgctatcggc
     3061 ggcatcgatt tgaacaatgc ccaagccgta ctcgccaccg gcgtttcctc actcgccgtc
     3121 gtccgcgccg tgaccgaagc ggcaaatccc gaagcggtgg ttaaagcgtt tcaggctttg
     3181 tgggatggat aaaaccgaaa gaagaaaatt caattgccgt gtaggcaaaa cttagcccgt
     3241 tatcgcaaac atacttaact ttaaatgtgg catatcatca aattccgtca tttccgcgca
     3301 agcgggaatc cgccttaaaa cttgagaaac catcatttga aaaacagttt ccgaatttca
     3361 aaaatggatt cccgcctgcg cgggaatgac ggcaactggc cggttgcgta tcaaaaaata
     3421 aagtaattcg gc
//
LOCUS       DAXHPV010000182         3349 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.182, whole genome shotgun sequence.
ACCESSION   DAXHPV010000182 DAXHPV010000000
VERSION     DAXHPV010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3349)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3349)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3349
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.182"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            117..1232
                     /gene="lst"
                     /locus_tag="ACFM6C_001888"
     CDS             117..1232
                     /gene="lst"
                     /locus_tag="ACFM6C_001888"
                     /EC_number="2.4.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyllactosaminide
                     alpha-2,3-sialyltransferase"
                     /protein_id="HFC6159286.1"
                     /translation="MGLKKACLTVLCLIVFCFGIFYTFDRVNQGERNAVSLLKDKLFN
                     EEGEPVNLIFCYTILQMKVAERIMAQHPGERFYVVLMSENRNEKYDYYFNQIKDKAER
                     AYFFYLPYGLNKSFDFIPTMAELKVKSMLLPKVKRIYLASLEKVSIAAFLSTYPDAEI
                     KTFDDGTGNLIQSSSYLGDEFSVNGTIKRNFARMMIGDWSIAKTRNASDEHYTIFKGL
                     KNIMDDGRRKMTYLPLFDASELKAGDETGGTVRILLGSPDKEMKEISEKAAKNFNIQY
                     VAPHPRQTYGLSGVTTLNSPYVIEDYILREIKKNPHTRYEIYTFFSGAALTMKDFPNV
                     HVYALKPASLPEDYWLKPVYALFTQSGIPILTFDDKD"
     gene            complement(1396..1854)
                     /locus_tag="ACFM6C_001889"
     CDS             complement(1396..1854)
                     /locus_tag="ACFM6C_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HFC6159287.1"
                     /translation="MKTQISLAAAAITLLLSACGGSGIPSQPKGEISENRTAAFKSMM
                     PDFSRMGKMVKGEEPYDVEKFKQAAAAFAESSKKPFTLFESDPQGNGRALPAVWSDGA
                     KFEAEKTKFAAAVEKLNAAAQTGKLDEIKAAYGETGASCKSCHDSFRAPE"
     gene            1973..2794
                     /locus_tag="ACFM6C_001890"
     CDS             1973..2794
                     /locus_tag="ACFM6C_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HFC6159288.1"
                     /translation="MAVLITGASAGFGEAMCRAFVGAGYRVIGAARRADRLQVLADEL
                     GALFYPLEMDVSRRESVENALNGIPDEFSDIDCLINNAGLALGLDTADKADFEDWETM
                     IQTNVLGLTFLTRKILPQMVERGGGYVMNLGSIAGNYAYAGSNVYGATKAFVRQFSLN
                     LRAELADKNIRVTNIEPGLCGNTEFSNVRFKGDDERAAGVYEGVEFIRPEDIAETALW
                     LYRRPAHMNVNTIEIMPVAQTFAGMKVIKKAVPEVREDFEKQSMSLFSRIRSWFK"
     gene            complement(2845..3291)
                     /gene="yciA"
                     /locus_tag="ACFM6C_001891"
     CDS             complement(2845..3291)
                     /gene="yciA"
                     /locus_tag="ACFM6C_001891"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HFC6159289.1"
                     /translation="MQHEEGNRQRPQGELLLRTVAMPRDTNPNQDIFGGWIMSQMDLG
                     GGILAAEIARGRIVTVAVQEMNFIRPVKVGNVVCCYGHCVRVGNTSLQLKIEVWVKTL
                     MNDCVTEDRYLVTEAVFTYVAIDAEGNPRPIPKEGNPKLSGLLPTP"
BASE COUNT          798 a          716 c          955 g          880 t
ORIGIN      
        1 aatttaaacc actataatat tcggtaactg tcggaatatc tgctaaaatt ccgcattttt
       61 ccgccccggg acactcgggg cgtatgttta atttatcgga atggagtttt agggatatgg
      121 gcttgaaaaa ggcttgtttg accgtgttgt gcctgattgt tttttgtttc gggatatttt
      181 atacatttga ccgggtaaat cagggggaaa ggaatgcggt ttccctgctg aaggacaaac
      241 tcttcaatga agagggggag ccggtcaatc tgattttctg ctataccata ttgcagatga
      301 aggtggcgga aaggattatg gcgcagcatc cgggggagcg gttttatgtg gtgctgatgt
      361 ctgaaaacag gaatgaaaaa tacgattatt atttcaatca gataaaggat aaggcggagc
      421 gggcgtattt tttctatctg ccctacggtt taaacaaatc gtttgatttc attccgacga
      481 tggcggagct gaaggtgaag tcgatgctgc tgccgaaggt caaacggatt tatttggcaa
      541 gtttggaaaa agtcagcatt gccgcctttt tgagcactta cccggatgcg gaaatcaaaa
      601 cctttgacga tgggacaggc aatttaattc aaagcagcag ctatttgggc gatgagtttt
      661 ctgtaaacgg gacgatcaag cggaattttg cccggatgat gatcggagat tggagcatcg
      721 ccaaaacccg taatgcttcc gacgagcatt acacgatatt caagggtttg aaaaacatta
      781 tggacgacgg ccgccgcaag atgacttacc tgccgctgtt cgatgcgtcc gaactgaagg
      841 cgggggacga aacgggcggc acggtgcgga tacttttggg ttcgcccgac aaggagatga
      901 aggaaatttc ggaaaaggcg gcaaaaaact tcaacataca atatgtcgca ccgcaccccc
      961 gccaaaccta cgggctttcc ggcgtaacca cattaaattc gccctatgtc atcgaagact
     1021 atattttgcg cgagattaag aaaaacccgc atacgaggta tgaaatttat acctttttca
     1081 gcggcgcggc gttgacgatg aaggattttc ccaatgtgca cgtttacgca ttgaaaccgg
     1141 cttcccttcc ggaagattat tggctcaagc cggtgtatgc cctgtttacc caatccggca
     1201 tcccgatttt gacatttgac gataaagatt aatcgcatag caaatcaaaa tagaaaatgg
     1261 cggagtaagt aaggcaaaaa tcaggatatg gcgtattttt tgaattgaag ataatttctg
     1321 attgctttgc gtgtgctgaa atgacaaaga aaatgccgtc tgaaggcttc agacggcatc
     1381 gttctgtttc ggatgttatt ccggcgcgcg gaaactgtcg tggcaggatt tgcagcttgc
     1441 gccggtttcg ccgtaggcgg ctttgatttc atccagtttg ccggtttgtg ctgcggcgtt
     1501 gagtttttcg acggcggcgg cgaattttgt tttttcggct tcaaattttg caccatccga
     1561 ccaaacggcg ggcagggcgc ggccgttgcc ttgcggatcg gactcaaaaa gtgtgaacgg
     1621 tttcttgctg ctttcggcaa acgccgccgc cgcctgtttg aatttttcga catcgtaagg
     1681 ctcttcgcct ttgaccattt tgcccatacg cgagaagtcg ggcatcatag atttgaacgc
     1741 ggcggtgcgg ttttcggaaa tttcgccttt gggttgggaa ggtattccgc tgcctccgca
     1801 ggcggaaagg agcagtgtga tggcggcagc agcaaggctg atttgggttt tcatattgaa
     1861 tgtgtcctgt cgtggtggta tggttgttgt cattttcagc cggcgcgatg ccgtctgaag
     1921 agcgttatga tacctgaaac aggtttggga aacgagaaag aaaggaaaaa caatggctgt
     1981 tttaattacc ggtgcttcgg caggattcgg cgaagcgatg tgccgtgcgt ttgtcggggc
     2041 tggataccgc gttatcggtg cggcgcgccg tgcggacagg cttcaggttt tggcggatga
     2101 attgggtgct ttgttttacc ctttggaaat ggacgtgtcg cgacgcgagt cggtggaaaa
     2161 tgccttaaac ggcatccccg atgaattttc cgacatcgac tgcctcatca acaatgccgg
     2221 gctggctttg ggtttggaca cggcggacaa ggcggatttt gaagattggg aaacaatgat
     2281 tcaaaccaat gttttgggtt tgacgttcct gacgcgcaag attttgccgc aaatggtgga
     2341 acgcggcggc ggctatgtga tgaatttggg ttcgattgcg ggtaattatg cttatgccgg
     2401 cagcaacgtt tacggggcga ccaaggcgtt tgtgcgccag ttcagcctga atttgcgcgc
     2461 ggagttggcg gataagaaca tccgcgttac caatatcgag ccgggtttgt gcggcaatac
     2521 ggagttttcc aacgtgcgct tcaaaggcga tgacgagagg gcggcgggcg tgtatgaggg
     2581 tgtggaattt atccgccccg aagatattgc ggaaaccgca ttgtggctgt accgccggcc
     2641 ggcgcatatg aatgtgaaca cgattgaaat tatgcccgtg gcgcagactt ttgcaggaat
     2701 gaaagtgata aaaaaagccg tgcccgaagt gcgggaagac tttgaaaaac agagtatgtc
     2761 gctgttttcc cgcatcaggt cttggttcaa atgatacgga atgccgtctg aagacagttt
     2821 cagacggcat ttttacgggt atttttacgg agtaggcaat aagcccgaca atttggggtt
     2881 gccttctttc ggaatcgggc gcggattgcc ttccgcatcg atggcaacat aagtgaacac
     2941 cgcctcggtt acgaggtagc ggtcttcggt aacgcaatcg ttcatcaaag ttttcaccca
     3001 gacttcgatt ttaagctgga gggaagtatt gcccacgcgg acgcaatgcc cgtagcagca
     3061 gacgacgttg ccgaccttga ccgggcggat gaagttcatt tcctgaacgg cgacggtaac
     3121 gatgcgtccc cgcgcgattt ccgccgccaa tatgccgccg cccaaatcca tctgcgacat
     3181 aatccagccg ccgaaaatgt cttggttggg attggtatcg cgcggcatag cgacggtacg
     3241 caggagcagt tcgccttgag ggcgttggcg gttgccttct tcgtgctgca taatgtttcc
     3301 ttgttttatt gaaatatata gtggattaaa tttaaaccag tacggcgtt
//
LOCUS       DAXHPV010000183         3343 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.183, whole genome shotgun sequence.
ACCESSION   DAXHPV010000183 DAXHPV010000000
VERSION     DAXHPV010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3343)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3343)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3343
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.183"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            60..689
                     /locus_tag="ACFM6C_001892"
     CDS             60..689
                     /locus_tag="ACFM6C_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biliverdin-producing heme oxygenase"
                     /protein_id="HFC6159290.1"
                     /translation="MSETENQALTFAKRLKADTTAVHDSVDNLVMSVQPFVSKENYIK
                     FLKLQSVFHKAVDHIYKDAELNKAIPELEYMARYDAVTQDLADLGDKPYEYGKPLPHE
                     TGNKAIGWLYCAEGSNLGAAFLFKHAQKLDYNGEHGARHLAPHPDGRGKHWRAFVEHL
                     NALNLTPEAEAEAIQGAREAFAFYKVVLRETFGLAADAEAPEGMMPHRH"
     gene            864..3239
                     /locus_tag="ACFM6C_001893"
     CDS             864..3239
                     /locus_tag="ACFM6C_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
                     /protein_id="HFC6159291.1"
                     /translation="MKPLQMLPIAALVGSIFGNPVFAADEAATETTPVKAEVKAVRVK
                     GQRNAPAAVERVNLNRIKQEMIRDNKDLVRYSTDVGLSDSGRHQKGFAVRGVEGNRVG
                     VSIDGVNLPDSEENSLYARYGNFNSSRLSIDPELVRNIEIVKGADSFNTGSGALGGGV
                     NYQTLQGRDLLLDDRQFGVMMKNGYSTRNREWTNTLGFGVSNDRVDAALLYSQRRGHE
                     TESAGKRGYPVEGAGSGANIRGSARGIPDPSQHKYHSFLGKIAYQINDNHRIGASLNG
                     QQGHNYTVEESYNLLASYWREADDVNRRRNTNLFYEWTPESDRLSMVKADVDYQKTKV
                     SAVNYKGSFPIEDSSTLTRNYNQKDLDEIYNRSMDARFKRITLRLDSHPLQLGGGRHR
                     LLFKTFASQREFENLNRDDYYFSGQISRTTSSIQHPVKTTNYGFSLSDQIQWNDVFSS
                     RAGIRYDHTKMTPQELNADCHACDKTPPAPNTYSGWSGFAGLAAQLNQAWRVGYDITS
                     GYRVPNASEVYFTYNHGAGTWLPSPNLKAERSTTHTLSLQGRGEKGTLDANLYQSNYR
                     NFLSEEQFIQLVRDKYCDEDNALAGYCKLYRNQLYWHMENIDKARIRGIELTGRLNLD
                     KVASFVPEGWKLFGSLGYAKSKLSGDNSLLSTQPLKVIAGVDYESPSEKWGVFSRLTY
                     LGAKKAKDAQYTVYENKGWGTPLQKKVKDYPWLNKSAYVFDMYGFYKPAKNLTLRAGV
                     YNVFNRKYTTWDSLRGLYSYSTTNSVDRDGKGLDRYRAPSRNYAVSLEWKF"
BASE COUNT          896 a          873 c          827 g          747 t
ORIGIN      
        1 gggcaagtgc ggattttgcc cgccccgcat ccttatccct taccgacaaa ggaaaactta
       61 tgagtgaaac cgaaaatcaa gccctgacgt ttgccaaacg tctgaaggcg gataccacgg
      121 cggttcacga cagcgtggat aacctcgtta tgtctgtcca accgtttgtc agcaaagaaa
      181 actacatcaa atttttgaaa ctccaatccg ttttccacaa ggccgtcgac cacatctata
      241 aagatgccga attaaacaaa gccattcccg agctggaata catggcgcga tacgatgccg
      301 taacgcaaga ccttgcagat ttgggtgaca aaccttacga atacggcaaa ccgctgccgc
      361 atgaaaccgg caacaaagca atcggctggc tttattgcgc cgaaggatcc aatttgggcg
      421 cggcattttt gttcaaacac gcccaaaaac tcgattacaa cggcgaacac ggcgcgcgcc
      481 acctcgcacc ccatcccgac gggcgcggca aacactggcg cgctttcgtc gagcatctga
      541 acgctttgaa cctgactccc gaagccgaag cggaagccat ccaaggcgcg cgcgaagcct
      601 ttgcattcta caaagtcgtg ttgcgcgaaa ccttcggctt ggcagccgat gccgaagcac
      661 cggaaggaat gatgccgcac aggcactaaa aaataatcga accaaataaa caaggtctcg
      721 gcatagctgt ttgcagggac ctttaattac acggcgcggc tttgtttaca tggattactg
      781 tcttattaaa tattaatgat tatcataaaa tctattattc gctaaccgat ggatgaacaa
      841 tccatacatc ttgagttgat aatatgaaac cattacaaat gctccctatc gccgcgctgg
      901 tcggcagtat tttcggcaat ccggtctttg cggcagatga agctgcaact gaaaccacac
      961 ccgttaaggc agaggtaaaa gcagtgcgcg ttaaaggcca gcgcaatgcg cctgcggctg
     1021 tggaacgcgt caaccttaac cgtatcaaac aagaaatgat acgcgacaac aaagacttgg
     1081 tgcgctattc caccgatgtc ggcttgagcg acagcggccg ccatcaaaaa ggctttgctg
     1141 ttcgcggcgt ggaaggcaac cgtgtcggcg tgagcataga cggtgtaaac ctgcctgatt
     1201 ccgaagaaaa ctcgctgtac gcccgttatg gcaacttcaa cagctcgcgt ctgtctatcg
     1261 accccgaact cgtgcgcaac atcgaaatcg tgaagggcgc agactctttc aataccggta
     1321 gtggtgcatt gggtggcggt gtgaattacc aaaccctgca aggccgtgat ttgctgttgg
     1381 acgacaggca attcggcgtg atgatgaaaa acggttacag cacgcgtaac cgtgaatgga
     1441 caaataccct cggtttcggc gtgagcaacg accgcgtgga tgccgctttg ctgtattcgc
     1501 aacggcgcgg ccatgaaact gaaagcgcgg gcaagcgtgg ttatccggta gagggtgctg
     1561 gtagcggagc gaatatccgt ggttctgcgc gcggtattcc tgatccgtcc caacacaaat
     1621 accacagctt cttgggtaag attgcttatc aaatcaacga caaccaccgc atcggcgcat
     1681 cgctcaacgg tcagcagggg cataattaca cggttgaaga gtcttacaac ctgcttgctt
     1741 cttattggcg tgaagctgac gatgtcaaca gacggcgtaa caccaacctc ttttacgaat
     1801 ggacgccgga atccgaccgg ttgtctatgg taaaagcgga tgtcgattat caaaaaacca
     1861 aagtatctgc ggtcaactac aaaggttcgt tcccgataga ggattcttcc accttgacac
     1921 gtaactacaa tcaaaaggac ttggatgaaa tctacaaccg cagtatggat gcccgcttca
     1981 aacgcattac cctgcgtttg gacagccatc cgttgcaact cggggggggg cgacaccgcc
     2041 tgttgttcaa aacctttgcc agtcaacgtg agtttgaaaa cttaaaccgc gacgattact
     2101 acttcagtgg tcagatatct cgtaccacca gctcgattca acaccctgtg aaaaccacca
     2161 actacggttt ctcgctgtct gaccaaatcc aatggaacga cgtgttcagc agccgcgcag
     2221 gtatccgtta cgaccacacc aaaatgacgc ctcaggaatt gaatgccgac tgtcatgcct
     2281 gcgacaaaac cccgcccgca ccgaatactt acagcggctg gagcggtttc gccggtttgg
     2341 cggctcaact gaatcaggct tggcgtgtcg gttacgacat tacttccggc tatcgcgtcc
     2401 ccaatgcgtc cgaagtgtat ttcacttaca accacggtgc gggcacatgg ctgcctagtc
     2461 ctaatctgaa agccgagcgc agcaccaccc acaccctgtc tttgcaggga cgcggtgaaa
     2521 aaggtacgct ggatgccaat ctgtatcaaa gcaactaccg caatttcctt tcggaagaac
     2581 agtttataca acttgtgcgt gataaatatt gtgatgaaga taatgctcta gcaggttatt
     2641 gtaaactcta ccgaaatcag ctttattggc atatggaaaa tatcgacaag gccagaatcc
     2701 gcggcatcga gctgacaggc cgtctgaatc tggacaaagt agcgtctttt gttcctgagg
     2761 gctggaaact gttcggctcg ctgggttatg cgaaaagcaa actgtcgggc gacaacagcc
     2821 tgctgtccac acagccgctg aaagtgattg ccggtgtcga ttacgaaagc ccgagcgaaa
     2881 aatggggtgt gttctcccgc ctgacctatc tgggcgcgaa aaaggccaaa gacgcgcaat
     2941 acaccgttta tgaaaacaag ggctggggta cgcctttgca gaaaaaggta aaagattacc
     3001 cgtggctgaa caagtcggct tatgtgttcg atatgtacgg cttctacaaa ccggctaaaa
     3061 acctgacttt gcgtgcaggc gtatataatg tgttcaaccg caaatacacc acttgggatt
     3121 ccctgcgcgg cctgtatagc tacagcacca ccaactcggt cgaccgcgat ggcaaaggct
     3181 tagaccgcta ccgcgcccca agccgtaatt acgccgtatc gctggaatgg aagttttaat
     3241 ctggtattat tgaattaatc gccttgttga aaattaaagc cgtccgaatt gtgttcaaga
     3301 attcattcgg acggcttttt accgtaaatc tgtgtgatgg ggt
//
LOCUS       DAXHPV010000184         3341 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.184, whole genome shotgun sequence.
ACCESSION   DAXHPV010000184 DAXHPV010000000
VERSION     DAXHPV010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3341)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3341)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3341
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.184"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..188
                     /locus_tag="ACFM6C_001894"
     CDS             <1..188
                     /locus_tag="ACFM6C_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159292.1"
                     /translation="IFVNPLYRHSRKNKKIKNTKLKYRHSRAGGNLGLSVRKLIGKNG
                     FSNPETPDSCFRGNPVF"
     gene            complement(506..751)
                     /locus_tag="ACFM6C_001895"
     CDS             complement(506..751)
                     /locus_tag="ACFM6C_001895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159293.1"
                     /translation="MPSELQTAFPASQLQRERTHTAIPAKNRKSKKKPKIRHSRAGGN
                     PIRPVSVFFEFQVTSKPPFPQKRESRNSKLQEFIKND"
     gene            complement(764..1348)
                     /gene="rnhB"
                     /locus_tag="ACFM6C_001896"
     CDS             complement(764..1348)
                     /gene="rnhB"
                     /locus_tag="ACFM6C_001896"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HFC6159294.1"
                     /translation="MHILTAGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSE
                     KKRDALAEMIKNQAAAWHVAAATPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDG
                     NRIPEHLGIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYG
                     TKQHLEALKQYGVLPEHRRDFAPVRNLLAQQTLF"
     gene            complement(1417..3312)
                     /gene="mnmG"
                     /locus_tag="ACFM6C_001897"
     CDS             complement(1417..3312)
                     /gene="mnmG"
                     /locus_tag="ACFM6C_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HFC6159295.1"
                     /translation="MTHMIYPKTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIET
                     LGQMSCNPSIGGIGKGHLVRELDALGGAMALATDKSGIQFRRLNASKGAAVRATRAQA
                     DRILYKAAIREMLENQENLDLFQQAVEDVTLDGDRISGVITAMGVEFKARAVVLTAGT
                     FLSGKIHIGLENYEGGRAGDPAAKSLGGRLRELNLPQGRLKTGTPPRIDGRTIDFSQL
                     TEQPGDTPVPVMSVRGNADMHPRQVSCWITHTNTQTHDIIRSGFDRSPMFTGKIEGVG
                     PRYCPSIEDKINRFADKDSHQIFLEPEGLTTYEYYPNGISTSLPFDIQIALVRSMKGL
                     ENAHILRPGYAIEYDYFDPRNLKASLETKTIEGLFFAGQINGTTGYEEAAAQGLLAGA
                     NAVQYVREQDPLLLRREQAYLGVLVDDLITKGVNEPYRMFTSRAEYRLQLREDNADMR
                     LTEDGYKIGLVGEAQWRMFNEKREAIEREIQRLKTTWYTPQKLAEDEQIRVFGQKLSR
                     EANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVEIQVKYQGYIDRQNEEIDSR
                     RDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASRISGITPAAVALLMVHLK
                     RGFKDAK"
BASE COUNT          609 a          798 c         1011 g          923 t
ORIGIN      
        1 tgatttttgt taatccacta tatcgtcatt cccgcaaaaa caaaaaaatc aaaaacacaa
       61 aactgaaata tcgtcattcc cgtgcaggcg ggaatctagg tctgtcggta cggaaactta
      121 tcgggaaaaa cggtttttcc aaccctgaga ctccggattc ctgttttcgc gggaatccgg
      181 ttttttgagt ttcagtcatt tttgataaat tcttgcagct ttgagtttct agattcccgc
      241 ttttgcggga atgacgcgga aaagttgctg tgatttcgga taaattttcg tcacgcttaa
      301 tttctgtttt atccgataaa tgcctgcaat ctaaaatttc gtcattcccg caaaaacaaa
      361 aaatcaaaac agaagcctaa aatttcgtca ttcccgcgaa ggcgggaatc taggtctgtc
      421 ggtacggaaa cttatcgggt aaaacggttt tgccagccct gagactccgg attcctgttt
      481 tcgtaggaat ccggtttttt gagcttcagt catttttgat aaattcttgc agctttgagt
      541 ttctagattc ccgcttttgc gggaatggcg gtttggaagt tacctgaaat tcaaaaaaaa
      601 cggaaaccgg acggattgga ttcccgcctg cgcgggaatg acggatttta ggtttctttt
      661 ttgattttct gtttttcgcg ggaatggcgg tatgggttct ttctctttga agttgcgatg
      721 ctggaaatgc cgtctgaagt tcagacggca tttttgtgcc ggtttaaaac agcgtctgct
      781 gcgcgagcag gtttctgacg ggggcgaagt cgcggcgatg ttcgggcagc acgccgtatt
      841 gtttgagggc ttccagatgc tgcttcgtgc cgtaaccttt gtgtttgtcg aaaccgtatt
      901 ggggatggcg ttgcgccagt gcgtacattt ccgcatcgcg tgcggtcttt gccaaaacgg
      961 atgcggcgga gatttcgatg attttgctgt cgcctttgac gacggcttcg gcagggatac
     1021 ctaaatgttc tggaatgcgg ttgccgtcga tgaatattct ttcgggacgc acagccaaac
     1081 cgtcaacggc gcgtttcatg gcgagcatgg tagcgtgcag gatgttgagg ctggcgattt
     1141 cttcgggcgt ggcggcggcg acgtgccacg cggccgcctg attttttatc atttcggcaa
     1201 gcgcgtcgcg ttttttctcg ctgagttttt tggagtcggt cagtccgggc aggtcgaatg
     1261 tttccggaag gatgacggcg gcggcaaaca cgctgccgac taaaggcccg cgtcctgcct
     1321 cgtccacgcc ggcggtcagt atgtgcatga tgtttcctgt cgggatagta ggaatgccgt
     1381 ctgaaaaggg tttcagacgg catcgtaccg atgtgtttat ttcgcgtctt taaacccgcg
     1441 cttcaaatgc accatcagca atgccactgc cgcaggggtt atgccggaaa tgcggctggc
     1501 ttgtccgacg gtttcgggtt tgtgctgatt gagcttttgc tgcacttctg ccgacaagcc
     1561 tttgactttg ccgtaatcga tgccgtcggg cagttttaag gtttcgatgt cgcggcggct
     1621 gtcgatttct tcgttttggc ggtcgatata gccttggtat ttgacttgga tttcgacttg
     1681 ctcgatgact tcggcggaga ggttttcaga cggcatcgcg ccttcgagcg tcatcagcgc
     1741 ggcgtagtcg aggtttgggc ggcgcaggag gtcgtgcagg ttggcttcgc ggctgagttt
     1801 ttgtccgaac acgcggattt gttcgtcttc agcgagtttt tgcggcgtgt accacgttgt
     1861 tttcaaacgt tggatttcgc gttcgatggc ttcgcgtttt tcgttgaaca tacgccattg
     1921 cgcttcaccc accaagccga ttttgtagcc gtcttcggtc aggcgcatat cggcgttgtc
     1981 ttccctgagt tgcaggcggt attcggcgcg gctggtgaac atgcggtaag gttcgttcac
     2041 gcctttggtg atgaggtcgt ccaccaatac gccgaggtag gcttgttcgc ggcgcagcag
     2101 gagcgggtct tgttcgcgca catattgcac ggcgttcgcg cctgccaata aaccttgcgc
     2161 ggcggcttct tcgtagccgg tcgtgccgtt gatttgcccg gcgaaaaaca gtccctcaat
     2221 ggttttggtt tcgaggctgg ctttgaggtt gcgcggatcg aagtagtcgt attcgatggc
     2281 gtagccgggg cgcaggatat gggcgttttc caaacctttc atgctgcgta caagcgcgat
     2341 ttggatgtcg aacggcaggc tggtggagat accgttagga tagtattcgt acgtagtcag
     2401 gccttcgggt tcgaggaaaa tctggtggct gtctttgtcg gcgaagcggt tgattttgtc
     2461 ttcgatagac gggcagtagc gcggaccgac gccttcgatt ttgccggtga acatggggct
     2521 gcggtcgaag cctgagcgga tgatgtcgtg ggtttgcgtg ttggtatgcg taatccagca
     2581 ggatacttgg cgcgggtgca tatcggcgtt gccgcgtacg gacatgacgg gaacgggcgt
     2641 gtcgccgggc tgttcggtca gttgggagaa gtcaatcgtg cgtccgtcga tgcgcggcgg
     2701 cgtgccggtt ttcagacggc cttgcggcag gttcaattcg cgcaaacgtc cgcccagcga
     2761 tttggcggcg gggtcgccgg cgcgtccgcc ctcgtagttt tccaaaccga tgtggatttt
     2821 gccggacaaa aacgtgcctg cggtcaacac cacggcgcgt gctttaaact ccacgcccat
     2881 cgcggtgatt acgcctgaaa tgcggtcgcc atcgagcgtt acgtcttcga cggcttgttg
     2941 gaaaaggtcg aggttttctt ggttttccaa catttcgcgg atggcggctt tatataggat
     3001 acgatccgcc tgcgcgcgcg tggcccgtac tgccgcgcct ttgctggcgt tcagacggcg
     3061 gaactggatg ccggatttgt cggttgccaa cgccatcgcg ccgccgagcg cgtcgagttc
     3121 gcgcaccaaa tgccctttgc cgatgccgcc gatggaaggg ttgcacgaca tttgtccgag
     3181 cgtttcaata ttgtgtgtga gcaaaagcgt ctgcgcgccc atacgggcgg cggcgagcgc
     3241 ggcttctgtg ccggcgtgtc cgccgccgac gacgataacg tcgtaggttt tggggtaaat
     3301 catgtgggtc atgtgtgtat tgcctgacgg tgtttcagac g
//
LOCUS       DAXHPV010000185         3295 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.185, whole genome shotgun sequence.
ACCESSION   DAXHPV010000185 DAXHPV010000000
VERSION     DAXHPV010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3295
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.185"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(115..1689)
                     /locus_tag="ACFM6C_001898"
     CDS             complement(115..1689)
                     /locus_tag="ACFM6C_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003748724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HFC6159296.1"
                     /translation="MAQIQMSANVKTINAVFAAMLVGTVGYFIYWGLGYTHYNYAALF
                     IIATMFGVFMAFNIGGNDVANSFGTSVGAGTLTIPQALLIAAVFEVSGAVIAGGEVTN
                     TIRKGIVDLKGVDFEPIQFVFIMMSALLAAALWLLFASKKGLPVSTTHSIIGGIVGSA
                     VCMAVMNDAASGDLIRWGKLGGIGVSWVLSPVLGGAVSYFLFSRVKKNVLDYNAWAEG
                     TLKGIKQEKKAYKERHRLFFEGLSEAEKVEYATKMAHDAQIYDEPEFDPQELQSEYYR
                     GLYAFDNRKNNVDSYKALHSWIPFIASFGAMMISAMLIFKGLKNLHLGMSNVNSFLTI
                     FMIGAAVWMGTFVFAKSLKRKDLGKSTFQMFSWMQVFTACGFAFSHGANDIANAIGPF
                     AAIMDVLRTNSVAAQNVVPPIAMLTFGIALIVGLWFVGKEVIKTVGTSLAEMHPASGF
                     TAELSAASVVMGASLMGLPVSSTHILVGAVLGIGLVNRNVNWKLMKPIGLAWVITLPA
                     AAVLSVVCYLVLQAVF"
     gene            2014..3114
                     /locus_tag="ACFM6C_001899"
     CDS             2014..3114
                     /locus_tag="ACFM6C_001899"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009254 - peptidoglycan turnover [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HFC6159297.1"
                     /translation="METQLYIGIMSGTSMDGADAVLVRMDGGKWLGAEGHAFTPYPDR
                     LRRQLLDLQDTGTDELHRSRILSQELSRLYAQTAAELLCSQNLAPSDITALGCHGQTV
                     RHAPEHGYSIQLADLPLLAERTRIFTVGDFRSRDLAAGGQGAPLVPAFHKALFRDDRE
                     TRAVLNIGGIANISVLPPDAPAFGFDTGPGNMLMDAWMQAHWQLPYDKNGAKAAQGNI
                     LPQLLDRLLAHPYFAQPHPKSTGRELFALNWLETYLDGGENRYDVLRTLSRFTAQTVF
                     DAVSHAAADARQMYICGGGIRNPVLMADLAECFGTRVSLHSTAELNLDPQWVEAAAFA
                     WMAACWVNRIPGSPHKATGASKPCILGAGYYY"
BASE COUNT          833 a          969 c          812 g          681 t
ORIGIN      
        1 ctataccaaa cggcatatcc cgacagaaca gattgtgcat aaggcacaag cccgcacatt
       61 ccatcaacaa aatgccgtct gaacacgggt tcagacggca tcagtatttt acaatcagaa
      121 tactgcctgt aaaaccaagt agcagacaac cgacaatacg gcggcggcag gcagggtaat
      181 gacccacgcc aaaccgatgg gcttcatcag tttccagttg acattgcggt tgaccagacc
      241 gatgccgagt accgcgccga ccaagatatg cgtactggac acgggcagcc ccatcagcga
      301 cgcgcccatc acgacggatg cggcggacag ttcggcggta aaacccgagg cggggtgcat
      361 ttcggccaaa ctcgtaccga cggttttaat cacctcttta ccgacaaacc acaaaccgac
      421 aatcagcgcg atgccgaaag tcagcatcgc aatcgggggg acgacatttt gcgcggcaac
      481 gctgttggta cgcaaaacat ccataatcgc ggcaaacgga ccgatggcgt tggcgatatc
      541 gttcgcaccg tggctgaatg cgaagccgca ggcggtaaag acctgcatcc atgaaaacat
      601 ctgaaaggtc gatttgccca agtctttacg cttgaggctt ttggcaaaaa caaacgtccc
      661 catccacacc gccgcgccta tcataaagat ggtcaggaag ctgttgacgt tgctcatccc
      721 caaatgcagg tttttcaagc ccttgaaaat cagcatagcg gaaatcatca tcgcgccgaa
      781 cgaagcgata aagggaatcc aagaatgcag cgctttgtag gaatcgacat tgtttttacg
      841 gttgtcgaac gcataaagac cgcggtaata ctccgattgc agctcttgcg gatcgaattc
      901 gggttcgtcg taaatttgcg cgtcgtgcgc cattttggtg gcgtactcga ctttttcggc
      961 ttcggacaaa ccctcgaaaa acaggcggtg ccgttcttta taggcctttt tttcctgctt
     1021 gatgcccttg agcgtacctt ccgcccaagc gttgtaatct aagacgtttt tcttgacgcg
     1081 cgaaaacaga aaataggaca ccgcgccgcc caacacgggc gacaataccc aagaaacacc
     1141 aataccgccc agcttgcccc aacgtatcaa atcgcccgat gcggcatcgt tcattaccgc
     1201 catacatacc gcgctgccga caatgccgcc gataatggaa tgggtagtag ataccggaag
     1261 cccttttttc gaggcaaaca acagccacaa cgccgccgcc aaaagcgcgg acatcataat
     1321 aaacacaaac tgtatgggtt cgaaatcaac acccttcaaa tcgacgatgc ctttgcgtat
     1381 ggtattggtt acctcaccgc ccgcgatgac cgcgccgctg acctcaaata ccgccgcaat
     1441 cagcaaagcc tgcgggatgg tcagcgtacc cgcaccgacg ctggtaccga aagaattggc
     1501 aacatcgttg ccgccgatgt tgaacgccat aaacacgccg aacatcgtgg caataatgaa
     1561 taaggcggcg taattgtaat gggtataacc caagccccaa taaataaaat agccgactgt
     1621 acctaccagc atggcggcaa agacggcgtt gatggtttta acatttgcgc tcatttggat
     1681 ttgagccatg gcaatcttcc tttaatgtgg tggaaatcat gagtgttgcc gacactgtac
     1741 tgctgcctcc ggtcgaactg ccgtttcggg atatggcaga cgcatccttc cttctgaacc
     1801 gcatccgaat acccccaaac ctgaccgaat gcaaaactgc tgccggaaac ggtttgtatg
     1861 acacttctac tactggatgt tgcgggcgca ttataatatt tttccatccg tcttgaaaca
     1921 tttatttaca ctttatttac actgcggcgg caaatcggta tacgagcgtc aatacacgtt
     1981 aaaatggcgt tttgcaccag tttgggagtg atgatggaaa cacagcttta catcggcatc
     2041 atgtcgggaa ccagtatgga tggggcggat gccgtgctgg tacggatgga cggcggcaaa
     2101 tggctgggcg cggaagggca cgcctttacc ccctatcccg acaggctgcg ccgccaattg
     2161 ctggatttgc aggacacagg cacagacgaa ctgcaccgca gcaggatttt gtcgcaagaa
     2221 ctcagccgcc tatatgcgca aaccgccgcc gaactgctgt gcagtcaaaa cctcgcgccg
     2281 tccgacatta ccgccctcgg ctgccacggg caaaccgtcc gacacgcgcc ggaacacggt
     2341 tacagcatac agcttgccga tttgccgctg ctggcagaac ggacgcggat ttttaccgtc
     2401 ggcgacttcc gcagccgcga ccttgcggcc ggcggacaag gtgcgccgct cgtccccgcc
     2461 tttcacaaag ccctgttccg cgacgacagg gaaacacgcg cggtactgaa catcggcggg
     2521 attgccaaca tcagcgtact cccccccgac gcacccgcct tcggcttcga cacaggaccg
     2581 ggcaatatgc tgatggacgc gtggatgcag gcacactggc agcttcctta cgacaaaaac
     2641 ggtgcaaagg cggcacaagg caacatattg ccgcaactgc tcgacaggct gctcgcccac
     2701 ccgtatttcg cacaacccca ccctaaaagc acggggcgcg aactgtttgc cctaaattgg
     2761 ctcgaaacct accttgacgg cggcgaaaac cgatacgacg tattgcggac gctttcccga
     2821 ttcaccgcgc aaaccgtttt cgacgccgtc tcacacgcag cggcagatgc ccgtcaaatg
     2881 tacatttgcg gcggcggcat ccgcaatcct gttttaatgg cggatttggc agaatgtttc
     2941 ggcacacgcg tttccctgca cagcaccgcc gaactgaacc tcgatccgca atgggtagaa
     3001 gccgccgcgt tcgcatggat ggcggcgtgt tgggtcaacc gcattcccgg tagtccgcac
     3061 aaagcaaccg gcgcatccaa accgtgtatt ctgggcgcgg gatattatta ttgagcacaa
     3121 atgccgtctg aaagaccgtt ccgccgttca gacggcattt gtgcctcttt catttacaaa
     3181 cccttaaaat ccctttatac tcaaaactcg ttcaaaaaaa aacaaaccct gctatgaaaa
     3241 tcctgctcct cctcatccct ctcgtcctca ccgcctgcgg cacactgacc ggcat
//
LOCUS       DAXHPV010000186         3290 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.186, whole genome shotgun sequence.
ACCESSION   DAXHPV010000186 DAXHPV010000000
VERSION     DAXHPV010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3290
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.186"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(59..217)
                     /locus_tag="ACFM6C_001900"
     CDS             complement(59..217)
                     /locus_tag="ACFM6C_001900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159298.1"
                     /translation="MAENLPFPSFIHLLFLEFAFTGRGGAPRTPGFGKPPDSAPAELL
                     VEKLTSPF"
     gene            182..>3290
                     /gene="pilC"
                     /locus_tag="ACFM6C_001901"
     CDS             182..>3290
                     /gene="pilC"
                     /locus_tag="ACFM6C_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilC family type IV pilus tip adhesin"
                     /protein_id="HFC6159299.1"
                     /translation="MNKTWKRQVFRHTALYTAILMFSHTGGGGAQAQTHKYAIVMNGQ
                     QLPEVKWGNSYNSLTVKSNEREVTHTSNFVVAKKYISFSFNNTDEVVAEKKDAVVFGA
                     ATYLPPYGKVSGFDTAKLVERKNAVDQIGTTHPGLIGYNYQDVTCASGNCPELSYRTQ
                     FTFNNGLKRNGNGGRLDIYEDKSRDNSPIYKLKDHPWLGVSFNLGGESSFKPKRQGSL
                     VSSFREDVTQQNGTQDQYKSKNLVYTTDDYNSKGNKNHQDKHHAVAFYLNAKLHLLDK
                     KQIQHIAQGVTVDLGTLKTRIEPTEAWKKQRYHFFNGGTWTYEDKGSVSVKLKLPEVK
                     AGRCINKQNPNPNAKALSPALTAPALWFGPVQNGKAEMYSASVSTYPDSSSSRIFLQN
                     LKRKNDPNKPGRYSLADLSASDIQSKEPTFTSRQTVIRLDKGVHQIKLQGNEVTGFNG
                     NSNNATFGIVSEGSFMPDASEWKKVLLPWTVRASNDDGQFNTFNKKENNGKPTYSQKY
                     RSRDNSKRERDLGDIVNSPIVAVGGYLATSANDGMVHIFKKGNGDARNYSLKLSYIPG
                     TMPRQYFDNDTSALKDSTLAQELRTFAEKGYVGDRYGVDGGFVLREVERGGKKHVFMF
                     GAMGFGGRGAYALDLTKVDSNNPTAVSLFDVKNDNNNGNNGVKLGYTVGTPQIGKTHN
                     GKYAAFLASGYATKDINSNDNTTALYVYDLENNNGTPIAKIEVKDGKGGLSSPTLVDK
                     DLDGTVDIAYAGDRGGNMYRFDLSGNNPTKWSARAIFSGNKPITSAPAISQLKDKRVV
                     IFGTGSDLSEEDVDKKDEQYIYGIFDDDTATSNVDVKLKGLGGGLLEQVLEQKDKTLF
                     LTDYKRSDGSGSKGWVVKLKDGQRVTVKPTVVLRTAFVTIRKYTDNGCGAETAILGIN
                     TADGGKLTKKSARPIVPDANKDVAQYSGHKKGINGKSIPIGCMWKNNETVCPNGYVYD
                     KPVNVRYLDEKKTDGFSTTADGDAGGSGIDPAGKRSGKNNRCFSQKGVRTLLMNDLDS
                     LDITGP"
BASE COUNT          959 a          817 c          834 g          680 t
ORIGIN      
        1 ctgtcgggca tctgcagcgg tttgctaaaa aacgctttac cgtgatcagt gtgcaaagtt
       61 aaaatgggga agtaagcttt tcaaccagca attcggcggg cgcggaatcg ggcggtttac
      121 cgaaccccgg cgttcgcggc gcgccgcccc gtcccgtgaa ggcaaactca aggaataaaa
      181 gatgaataaa acttggaaac ggcaggtttt ccgccatacc gcgctttata ccgccatatt
      241 gatgttttcc cataccggcg gggggggggc gcaagcgcaa acgcataaat acgctattgt
      301 aatgaacgga caacagctgc ctgaggtaaa gtgggggaat tcatataact cattgacggt
      361 caaaagcaat gaacgcgaag ttacccatac gagtaatttt gttgtagcaa aaaagtacat
      421 tagtttctca ttcaataata ccgatgaagt tgttgctgaa aaaaaagatg ctgtcgtttt
      481 cggcgcggcg acctacctgc cgccctacgg caaggtttcc ggttttgata ccgctaagct
      541 ggtcgagcgc aaaaatgccg ttgatcagat tggtacgacc caccctgggt tgataggcta
      601 caactaccaa gatgtcactt gcgccagcgg aaactgtcct gaacttagct atagaaccca
      661 atttaccttc aataacgggt tgaaaagaaa tggaaacggc ggcaggctgg atatatacga
      721 agacaaaagc cgcgacaatt cgcccattta caaattgaag gatcatccat ggttgggcgt
      781 gtctttcaat ttgggcggcg agagctcctt caaaccaaag agacaaggtt ctttggtatc
      841 ttcttttaga gaggatgtga cgcagcaaaa tggtacacaa gaccaataca aaagcaaaaa
      901 cctcgtttat acgacagacg attacaatag taagggtaat aaaaaccatc aggacaaaca
      961 ccacgccgtc gccttttatc tgaacgccaa actgcacttg ctggataaaa aacaaatcca
     1021 acatatcgcg caaggcgtaa cagttgattt gggtaccttg aaaacacgca tcgagccgac
     1081 ggaagcgtgg aaaaaacaga gatatcactt ttttaatggt ggtacttgga cgtatgaaga
     1141 taaaggatca gtcagcgtca aactcaaatt gccggaagtc aaagcaggtc gctgcatcaa
     1201 caaacagaac cccaatccca acgctaaagc cctttccccc gccctgactg cccccgcgct
     1261 gtggttcgga cctgtgcaaa atggtaaggc ggagatgtat tccgcttcgg tttccaccta
     1321 ccccgacagt tcgagcagcc gcatcttcct tcaaaatctg aaaagaaaaa acgaccccaa
     1381 caaacccggc cgctattccc tcgcagactt gagtgcgtcg gatattcaaa gtaaagagcc
     1441 gactttcaca agtcggcaaa ccgtcatccg attggataaa ggcgtacatc agatcaaact
     1501 tcaaggcaat gaggtcaccg gttttaatgg aaacagcaac aacgcaactt tcggcattgt
     1561 tagtgaaggg agcttcatgc ctgatgccag cgagtggaaa aaagtattgc tgccttggac
     1621 ggttcgtgct tccaatgatg acggtcaatt taacacattc aacaaaaaag aaaacaacgg
     1681 caagccaaca tacagtcaaa aataccgcag ccgcgataac agcaagcgcg agcgtgattt
     1741 gggcgacatc gtcaacagcc ccatcgtggc ggtcggcggg tatttggcta cttccgccaa
     1801 cgacgggatg gtgcatatct tcaaaaaagg caacggggac gcgcgcaact atagtctgaa
     1861 gctcagctac atccctggca cgatgccgcg ccaatatttt gataacgaca cttccgctct
     1921 caaagactcc accctcgccc aagagctgcg cacctttgcc gaaaaaggct atgtgggcga
     1981 ccgctacggc gtggacggcg gctttgtctt gcgcgaagtc gaacggggcg ggaaaaaaca
     2041 cgtgtttatg ttcggcgcga tgggctttgg cggtagaggc gcatacgcct tggatttgac
     2101 caaagtcgac agcaataacc cgaccgccgt ttccctgttt gatgtcaaaa atgacaataa
     2161 taacggcaat aatggcgtga aattaggcta caccgtcggc acgccgcaaa tcggcaaaac
     2221 ccacaacggc aaatacgccg ctttcctcgc ctccggttat gcgactaaag acattaacag
     2281 caacgacaat acaaccgcgc tgtatgtgta tgatttggaa aacaacaacg gtacgccgat
     2341 tgcaaaaatc gaagtgaagg acggcaaggg cgggctttcg tcccccacgc tggtggataa
     2401 agatttggac ggcacggtcg atatcgccta tgccggcgat cgcggcggga atatgtaccg
     2461 ctttgattta agcggcaaca acccgaccaa atggtctgca cgcgccattt tcagcggcaa
     2521 caaaccgatt acttccgcgc ccgccatttc ccaactgaaa gacaaacgcg tggttatctt
     2581 cggcacgggc agtgatttga gtgaagagga tgtggacaaa aaggacgaac aatatattta
     2641 cggtatcttt gacgacgata cggcgacgag taatgtagat gtaaaactca aaggtttggg
     2701 aggcgggttg ctcgagcagg tgcttgagca gaaggataaa accttattcc tgaccgatta
     2761 taagcgatcc gacggctcgg gcagcaaagg gtgggtagtg aaattgaagg acggacagcg
     2821 cgttaccgtc aaaccgaccg tggtattgcg taccgccttt gtaaccatcc gcaaatatac
     2881 tgacaacggc tgcggcgcgg aaaccgccat tttgggcatc aataccgccg acggcggcaa
     2941 gctgaccaag aaaagcgcgc gcccgattgt gccggacgcc aataaggatg tcgcgcaata
     3001 ttccggtcat aagaaaggca tcaacggcaa atccatccct ataggttgta tgtggaaaaa
     3061 caatgaaacc gtctgcccga acggatatgt ttacgacaaa ccggttaatg tgcgttatct
     3121 ggatgaaaag aaaacagacg gattttcaac aacggcagac ggcgatgcgg gcggcagcgg
     3181 tatagacccc gccggcaagc gttccggcaa aaacaaccgc tgcttctccc aaaaaggggt
     3241 gcgcaccctg ctgatgaacg atttggacag cttggatatt accggcccga
//
LOCUS       DAXHPV010000187         3241 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.187, whole genome shotgun sequence.
ACCESSION   DAXHPV010000187 DAXHPV010000000
VERSION     DAXHPV010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3241)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3241)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3241
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.187"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            152..604
                     /gene="dut"
                     /locus_tag="ACFM6C_001902"
     CDS             152..604
                     /gene="dut"
                     /locus_tag="ACFM6C_001902"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004170 - dUTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006226 - dUMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0046081 - dUTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HFC6159300.1"
                     /translation="MNIEVEMKVLDERMADVVPVYATEGSAGLDLRACLDEEVVLQPG
                     ETFLVPTGLAIYLANPAYAAVLLPRSGLGHKHGIVLGNLVGLIDSDYQGELKVSLWNR
                     SSEPFTVKPFERIAQMVVVPIVQARFKRVEEFVGSSRGEGGFGSTGLH"
     gene            682..1869
                     /gene="dapC"
                     /locus_tag="ACFM6C_001903"
     CDS             682..1869
                     /gene="dapC"
                     /locus_tag="ACFM6C_001903"
                     /EC_number="2.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009016 - succinyldiaminopimelate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyldiaminopimelate transaminase"
                     /protein_id="HFC6159301.1"
                     /translation="MNTLLNQLKPYPFARLREAMQGISAPEGLEAVPLHIGEPKHPTP
                     KVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREA
                     LFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSI
                     SEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNK
                     PLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSA
                     MSIPVQRASIAAWNDEQHVIDNRRLYQEKFERVIPILQQVFDVKLPDASFYIWLKVPD
                     GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVVDVATCVKAAETIVS
                     LYR"
     gene            2032..2811
                     /gene="yaaA"
                     /locus_tag="ACFM6C_001904"
     CDS             2032..2811
                     /gene="yaaA"
                     /locus_tag="ACFM6C_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HFC6159302.1"
                     /translation="MFFVLSPAKNLNEKDPAPVSEFTQPDLLAESDILMQQLRELAPQ
                     QIAELMHVSDKIALLNAQRNAEWHTPFTPENAKQAVFMFNGDVYEGMDANTLDIGQIR
                     YLQNHVRLLSGLYGLLRPLDLIQPYRLEMGTAFANLRGKNLYEFWGDIITNLLNDTLA
                     QAGSNTLVNLASQEYFKSVNTKKLRARLITPIFKDEKNGQYKIISFYAKRARGLMVRY
                     AAEHHITDPEMLKNFNYEGYAFNDAASNESEWVFMRSEQIK"
     gene            2894..2984
                     /locus_tag="ACFM6C_001905"
     tRNA            2894..2984
                     /locus_tag="ACFM6C_001905"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2928..2930,aa:Ser,seq:tga)
     gene            3062..3151
                     /locus_tag="ACFM6C_001906"
     tRNA            3062..3151
                     /locus_tag="ACFM6C_001906"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3096..3098,aa:Ser,seq:cga)
BASE COUNT          829 a          765 c          793 g          854 t
ORIGIN      
        1 tgtgcataat gttcgtcttc ataacgggaa gggcgggcat tatacactgg caacggattt
       61 caaaacaaaa ccgatttgcc gtgtttcagc gtaaacacgg cttgtgtata atctcccatc
      121 tttgaaaccg gccgtatgca ggagcaagac gatgaatatt gaagtagaaa tgaaagtatt
      181 ggacgaacgg atggcggatg ttgtccctgt ctatgcaacg gagggttctg caggtttaga
      241 tttgcgcgcc tgtttggatg aggaagtcgt tttgcagccg ggtgaaacgt ttcttgtgcc
      301 gacgggtttg gcaatttatt tggcgaatcc cgcatatgcc gccgttttgc tgccccgttc
      361 cggcttgggg cataaacacg gcattgtttt gggcaatttg gtcggtttga ttgactccga
      421 ttatcaaggg gaattgaagg tgtcgttatg gaacagaagc agcgaaccgt ttactgtcaa
      481 accgtttgag cgtatcgcgc agatggttgt cgtgccaatc gtgcaggcgc gtttcaaacg
      541 tgtcgaggaa tttgtcggaa gcagccgggg tgagggcggc ttcggcagta cgggtttgca
      601 ttgaatataa aatgccgtct gatgggtgtc gtcaggttcg gacggcatat cttcccaata
      661 tgccggtaat cggagaacat tatgaatacc ttactcaacc aactcaaacc ctatcccttt
      721 gcccggctgc gtgaagcgat gcagggcatt tccgcccccg aaggtctgga agccgtcccc
      781 cttcacatcg gcgaaccgaa acatccaaca ccgaaagtca ttacggatgc gctgaccgcc
      841 tcattgcacg agttggaaaa atatccgctg actgcgggtc tgcctgaact gcgtcaggcg
      901 tgtgcaaact ggttaaaacg ccgttatgac ggcttaacag tggatgcaga taatgaaatt
      961 ctgccggttt taggcagtag ggaggcgttg ttttcttttg ttcaaaccgt gttgaaccct
     1021 gtttcagacg gcatcaaacc cgcaattgtc agcccgaatc ccttttatca gatttacgaa
     1081 ggtgcgacac ttttgggcgg cggtgaaatc cattttgcca attgccccgc gccgtctttc
     1141 aaccccgatt ggcgcagtat ttccgaagag gtttggaaac gcaccaaact ggtgttcgtc
     1201 tgctcgccca acaaccccag cggcagcgtg ctggatttgg atggatggaa agaagttttt
     1261 gatttacagg ataaatatgg tttcattatt gcctcggatg aatgctattc cgaaatctat
     1321 ttcgacggca acaaaccttt aggctgcctg caggccgctg cacagttggg gcgaagcagg
     1381 caaaaactgc ttatgttcac cagtttgtcc aagcgttcca acgttccggg cctgcgttcc
     1441 ggttttgtcg ccggcgatgc cgaactgctt aaaaactttc tgctttacag aacctatcac
     1501 ggcagtgcaa tgagcattcc cgtgcagcgt gccagtattg ccgcctggaa tgacgaacag
     1561 cacgttattg acaaccgccg cctgtatcag gaaaaatttg agcgcgttat tcccattttg
     1621 caacaggtat ttgacgttaa attaccggat gcctcgtttt acatctggtt gaaagtcccc
     1681 gatggcgacg atttggcatt tgcacgcaat ttatggcaaa aagccgctat ccaagtattg
     1741 cccggacgtt ttttggcacg ggataccgaa cagggcaatc ccggggaagg ttatgtgcgt
     1801 atcgctttgg ttgtcgatgt cgcaacttgt gtcaaagctg cggaaaccat tgtttcccta
     1861 tatcggtaaa gaataaaaaa tgccgtctga acttttgttc agacggcatt tttcaatatt
     1921 ttacggttga atttgctgta acggtattta cttcactttt aatctaatcg gcttgcccgc
     1981 aaacacgttt aaatttaaaa tccccgtgtt tgacacaata ccgagtggat tatgtttttt
     2041 gtcctttccc ctgcgaaaaa ccttaacgaa aaagaccctg cccctgtcag cgagtttacc
     2101 caacccgacc tgctggcaga gtccgacatt ctaatgcagc agttgcgcga gcttgcgccg
     2161 caacagattg ccgaactgat gcacgtttcc gacaaaattg ccctcttaaa cgcgcagcgc
     2221 aatgcagaat ggcacacgcc gtttacgccg gaaaacgcca aacaggcggt ctttatgttc
     2281 aacggcgatg tttacgaagg tatggatgca aacacattgg atattggaca gatacgctat
     2341 ctgcaaaacc atgtccgcct gctgtccggt ctgtacggtc ttcttcgccc gttagacctg
     2401 atacagccct atcgtttgga aatggggacg gcatttgcca atttgcgcgg caagaatttg
     2461 tatgagtttt ggggcgacat cattaccaac cttttaaatg acacgcttgc ccaagcaggc
     2521 agcaatacgc ttgtcaacct tgcctcacag gaatatttca agtccgtcaa cacgaaaaaa
     2581 cttcgggcgc ggctgattac cccgatattt aaagacgaaa aaaacggtca atataaaatc
     2641 atcagtttct atgccaagcg cgcgcgcgga ttaatggtgc gctatgcggc agaacatcat
     2701 attaccgacc ctgaaatgct gaaaaatttt aattacgaag gctacgcatt caatgacgcg
     2761 gcttcaaatg aaagcgaatg ggtttttatg cgttcggaac aaataaagtg aaaacaataa
     2821 attaagtatt ttccgaaaaa agtgcttggc aaaatgtata aatttcatta ttattcctaa
     2881 tcttcaagaa gacggaagcg tggcagagcg gtttaatgca acggtcttga aaaccgtcga
     2941 gggttgatag ccctccgtga gttcgaatct caccgcttcc gccaatcctt gaggtcaaaa
     3001 accaaataaa aatgaagtag cataaagcat cggcattttt atttggtttt acttcattat
     3061 cggaaacgtg gcagagaggc tgaatgcagc ggactcgaaa tccgctgagg gtgcaaatcc
     3121 tccgtgggtt cgaatcccac cgtttccgcc agaaaacata accgccctga ttcggggcgg
     3181 ttcttttttg ttcaagattg agacctttgc aaaattcctt tccctcccga cagccgaaac
     3241 c
//
LOCUS       DAXHPV010000188         3236 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.188, whole genome shotgun sequence.
ACCESSION   DAXHPV010000188 DAXHPV010000000
VERSION     DAXHPV010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3236)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3236)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3236
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.188"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            107..1060
                     /locus_tag="ACFM6C_001907"
     CDS             107..1060
                     /locus_tag="ACFM6C_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HFC6159303.1"
                     /translation="MTHTVHLHLEETDNLALQRLCGSFDNNLDLLAKALDIHISRRFE
                     HFTFNGAFAHAGKRALLKLLETAQTRDLNDGDIRLAAVEAQTEDAGHQEKNHDHAYYF
                     RTKRGSIGGRTPRQNGYIRALLNHDIVFGLGPAGTGKTYLAVAAAVDAMEKHQVERII
                     LVRPAVEAGEKLGFLPGDLTQKVDPYLRPLYDALYDLMGFDRVTKLIEKGLIEIAPLA
                     YMRGRTLNGAYIILDEAQNTTPEQMKMFLTRIGFGAKAVITGDTSQIDLPKNIKSGLK
                     DAREKLHNVEGLYFHTFTGEDVVRHPLVQKIVEAYESAEHD"
     gene            complement(1177..1500)
                     /locus_tag="ACFM6C_001908"
     CDS             complement(1177..1500)
                     /locus_tag="ACFM6C_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159304.1"
                     /translation="MKKCILGILTACAAMPAFADRIGDLEARLAQLEHRVAVLESGSN
                     TVKIDLFGSNSTMYVCSVTPFQKTFEASDRNEGVARQKVRQACNRETSAMFCEDEAIR
                     CRKFD"
     gene            complement(1673..3034)
                     /locus_tag="ACFM6C_001909"
     CDS             complement(1673..3034)
                     /locus_tag="ACFM6C_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HFC6159305.1"
                     /translation="MLKKWLNKMLPSGRSSKKAESKTIIPAERHNIRAEMLSFAAENV
                     IRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIV
                     HVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPEKE
                     EILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSSKLGFDLSEETAAPIAE
                     SICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIAGK
                     MTVLALKNTDERLRADKSVSVGFVLAALMWPELERHWKSNLQQGLKPVPALSDAINTM
                     RETVERGWGVPQRFSATMREIWMFQPQFENRKGARPHKLFAQARFRAAYDFLLLRAET
                     GNADRALAEWWTAFQTASQEQRTEMTKNEAAARHEKNEGQAKKRRRRRRKPKPKVEGT
                     DWE"
BASE COUNT          759 a          943 c          780 g          754 t
ORIGIN      
        1 ttagagaatc gttctctttg agctaaggcg aggcaacgct gtactggttt aaatctaatc
       61 cactatagat taaaatcaca caatatccaa ctattcggac cttcatatga cacataccgt
      121 ccacctgcat ttagaagaaa ccgacaactt ggcgttgcag cgtctgtgcg gttcttttga
      181 caacaacctt gatttacttg ctaaagcact cgatatccac atcagccgcc gttttgaaca
      241 tttcactttc aacggcgcat ttgcacacgc cggcaaacgc gcactgctca aactcttgga
      301 aacggcgcag acgcgcgacc taaacgacgg cgacatcagg cttgccgccg tcgaagccca
      361 aaccgaagat gccggtcatc aagaaaaaaa ccatgaccac gcctattatt tccgcaccaa
      421 gcgcggcagc atcggcggca gaacgccacg gcagaacggc tatatccgcg ccctactcaa
      481 ccacgacatc gtattcggtc tcgggccggc aggtacgggc aaaacctatc tcgccgtcgc
      541 cgccgccgtc gatgcgatgg aaaaacacca agtcgaacgc atcattttag tgcggcctgc
      601 cgtcgaagcc ggcgagaaac tgggttttct gcccggtgac ctgacccaga aagtcgatcc
      661 ctaccttcgt ccgctttatg atgccctcta tgacctgatg ggctttgacc gtgtaaccaa
      721 gctgattgaa aaaggcctga ttgaaatcgc cccgctcgcc tatatgcgcg gcaggacgct
      781 caacggcgca tacatcatcc tcgacgaagc gcaaaacacc acgcccgaac aaatgaaaat
      841 gttcctgacc cgcatcggct tcggcgcgaa agccgtcatt accggcgaca ccagccaaat
      901 cgacctgccc aaaaacatca aatcgggatt aaaagatgcg cgtgagaaac tgcacaacgt
      961 ggaagggctg tatttccaca cctttaccgg cgaagacgtt gtccggcatc ctttggtgca
     1021 aaaaatcgtc gaagcctacg aatcggcaga acacgactga cattccaatg ccgtctgaaa
     1081 cccgatgcat ggaaaatcgg gcagagaaaa acagatacgg aagccaagct ccgtatccgt
     1141 atccgtatcc gtttctttat ccgtccaacc gatacatcaa tcgaattttc tgcatcggat
     1201 tgcctcatct tcgcaaaaca ttgccgaagt ttcgcggttg cacgcctgac gcactttctg
     1261 ccgcgccacg ccttcattcc gatcgcttgc ctcaaacgtc ttctgaaaag gcgtaacgct
     1321 gcatacatac atggtggaat ttgaaccgaa aaggtcgatt ttgacggtat tgctgccgct
     1381 ttccaatacg gcgacacggt gttccaactg cgccagacgt gcttccaaat cgccgattct
     1441 gtcggcaaat gcaggcatgg cggcacacgc ggtcaaaatg cccaaaatac attttttcat
     1501 caatttttcc ttgtttcttg aaccctgccc acccggacat cctttttccg agaggcaggg
     1561 ttagacttta tttacgggga tgaagcccct tacaaatcag gataatacat agaacggcac
     1621 tttatgcttc atcccatgtg ttgaaacttc attgctcctt gtctgttgac ccttattccc
     1681 aatccgttcc ctcaaccttc ggcttgggtt tgcgcctgcg acggcggcgt tttttcgcct
     1741 gtccttcgtt tttttcgtgc cgggcagcag cctcgttttt ggtcatttcc gtccgttgtt
     1801 cctgcgatgc cgtctgaaac gccgtccacc actcggcaag ggcgcggtcc gcattgccgg
     1861 tttcggcgcg caagagcagg aaatcatagg cggcacggaa acgcgcctgt gcaaacagtt
     1921 tgtgcggcct tgcgcctttg cggttttcaa actgcggctg gaacatccaa atttcgcgca
     1981 tcgtggcgga aaagcgttgc ggtacgcccc aaccgcgttc gacggtttcg cgcatcgtat
     2041 tgattgcatc ggacagggcg ggcacgggtt tcaaaccctg ttgcagattg cttttccaat
     2101 ggcgttccaa ctcgggccac atcagggccg ccagtacgaa accgaccgaa accgatttgt
     2161 cggcacgcag ccgctcatcg gtatttttca gggcaagcac cgtcattttt ccggcgatgc
     2221 cgtctgaaac gcgcaaggca ttgagcagcg gatggatgtc gtccggtatg tcaaatccgt
     2281 tcaaacgttt cagacactcg cgcgcgtgcc ctgaaaacag cagtttcata atttcgtcga
     2341 acagccgcgc taccggttcg tgcttcagac ggcatatcga ttcggcaatc ggtgcggcgg
     2401 tttcttccga cagatcaaag cccaatttgc tcgacaggcg gatggcgcgc aaaatcctga
     2461 cagggtcttc ctgatagcgt tcggcggcat caccaatcat aaccagcctg cgggcggcaa
     2521 catcggcaat cccgttgtgg aaatccaaaa tctcttcttt ttcaggatcg taatacaagg
     2581 cattgcaggt aaaatcgcgc cgcatcgcat cttcttcgat gctgccgtag gtgttgtcct
     2641 tcatgattct gccgtgcgcg ttctgatgaa ccttcgcacc gccgcgaaac gtcgttactt
     2701 cgataatctc cgcaccgttc atcacatgga caatctgaaa acgcctgccg atgatgcggc
     2761 tgcggcggaa gagtttgtgc acctgttcgg gcgtggcatc ggttgcgaca tcgaaatcct
     2821 tgggttcgat gccgagcagc aggtccctga ccgcgccgcc gaccacataa gcctgaaacc
     2881 ccgccccttt caggcggcgt atgacgtttt cggcggcaaa gctcaacatt tcggcacgga
     2941 tgttgtgtct ttcggcagga atgatcgttt tactttccgc ttttttactg ctccgaccgg
     3001 aaggcagcat cttattcaac cattttttca gcataaatat tctaacccga agagcggcat
     3061 ctccacgggc aaccgtgttc agacggcatc aggcggtacg attccgcaag atgccgtaac
     3121 cataaacaaa aggcgtagaa actacgccgt ccgaatcacg ccgccctcgc ggcggcggca
     3181 acgcgccatt ataacagatt gccctttaaa aaaatcagac cctgcttttg tggcgg
//
LOCUS       DAXHPV010000189         3227 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.189, whole genome shotgun sequence.
ACCESSION   DAXHPV010000189 DAXHPV010000000
VERSION     DAXHPV010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3227
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.189"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..958
                     /locus_tag="ACFM6C_001910"
     CDS             <1..958
                     /locus_tag="ACFM6C_001910"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFC6159306.1"
                     /translation="EKYFAQSLAAVVNQTWCNLDILIVDDGSTDGTLAIAKDFQKRDS
                     RIKILAQAQNSGLIPSLNIGLDELAKSGGGEYIARTDADDIAAPDWIEKIVGEMEKDR
                     SIIAMGAWLEVLSEEKDGNRLARHHRHGKIWKKPTRHEDIADFFPFGNPIHNNTMIMR
                     RSVIDGGLRYNTERDWAEDYQFWYDVSKLGRLAYYPEALVKYRLHANQVSSKYSVRQH
                     EIAQGIQKTARNDFLQSMGFKTRFDSLEYRQIKAVAYELLEKHLPEEDFERARRFLYQ
                     CFKRTDTLPAGAWLDFAADGRMRRLFTLRQYFGILHRLLKNR"
     gene            1000..1827
                     /locus_tag="ACFM6C_001911"
     CDS             1000..1827
                     /locus_tag="ACFM6C_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HFC6159307.1"
                     /translation="MQNHVISLASAAERRAHIAATFGARGIPFQFFDALMPSERLEQA
                     MAELVPGLSAHPYLSGVEKACFMSHAVLWKQALDEGLPYIAVFEDDVLLGEGAEKFLA
                     EDAWLKERFDPDSAFIVRLETMFMHVLTSPSGVADYCGRAFPLLESEHWGTAGYIISK
                     KAIRFFLQHFVMLQPEQIKPIDLMMFSDFFDKEGMPVYQVSPALCAQELHYAKFHDQN
                     SALGSLIEHDRLLNRKQQRRDSPANTFKRRLIRALTKISREREKRRQRREQFIVPFQ"
     gene            1839..1934
                     /locus_tag="ACFM6C_001912"
                     /pseudo
     CDS             1839..1934
                     /locus_tag="ACFM6C_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233115.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
     gene            1976..2818
                     /locus_tag="ACFM6C_001913"
     CDS             1976..2818
                     /locus_tag="ACFM6C_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HFC6159308.1"
                     /translation="MQNHVISLASAAERRAHIADTFGRHDIPFQFFDALMPSEELNRV
                     MAELVPGLAKQHLLSEVEKACFMSHAVLWKQALDEGLPYVAVFEDDVLLGKDAEKFLA
                     EDTWLEERFDKDSAFIVRLETMFAKVIVRPDKVLNYENRSFPLLESEHWGTAGYIISR
                     EAMRFFLERFAVLPAEWIKAVDWMMFTYFFDKEGMPVYQVNPALCTQELHYAKFLSKN
                     SMLGSDLEKDREQERRHRRSLKVMFDLKRALGKFGREKKKRMERQRQAELEKAYGRRV
                     ISFK"
BASE COUNT          864 a          757 c          841 g          765 t
ORIGIN      
        1 agaaaaatat ttcgcccaat cattagccgc cgtcgtgaat caaacttggt gcaacttgga
       61 tattttgatt gtcgatgacg gctcgacaga cggtacgctt gccattgcca aggattttca
      121 aaagcgggac agccgtatca aaatccttgc acaagctcaa aattccggcc tgattccctc
      181 tttaaacatc gggctggacg aattggcaaa gtcggggggg ggggaatata ttgcacgcac
      241 cgatgccgac gatattgccg cccccgactg gattgagaaa atcgtgggcg agatggaaaa
      301 agaccgcagc atcatcgcga tgggcgcgtg gctggaagtg ttgtcggaag aaaaggacgg
      361 caaccggctg gcgcggcatc acaggcacgg caaaatttgg aaaaagccga cccggcacga
      421 agatattgcc gactttttcc ctttcggcaa ccccatacac aacaacacga tgattatgcg
      481 gcgcagcgtc attgacggcg gtttgcgtta caacaccgag cgggattggg cggaagatta
      541 ccaattttgg tacgatgtca gtaaattggg caggctggct tattatcccg aagccttggt
      601 caaataccgc cttcacgcca atcaggtttc atccaaatac agcgtccgcc aacacgaaat
      661 cgcgcagggc atccaaaaaa ccgccagaaa cgattttttg cagtctatgg gttttaaaac
      721 ccggttcgac agccttgaat accgccaaat aaaagcagta gcgtatgaat tgctggagaa
      781 acatttgccg gaagaagatt ttgaacgcgc ccgccggttt ttgtaccaat gcttcaaacg
      841 gacggacacg ctgcccgccg gcgcgtggct ggattttgcg gcagacggca ggatgcggcg
      901 gctgtttacc ttgaggcaat acttcggcat tttgcaccga ttgctgaaaa accgttgaaa
      961 aacgccgctt tatccaacag acaaaaaaca ggataaatta tgcaaaacca cgttatcagc
     1021 ttagcttccg ccgcagaacg cagggcgcac attgccgcaa ccttcggcgc gcgcggcatc
     1081 ccgtttcagt ttttcgacgc actgatgccg tctgaaaggc tggaacaggc aatggcggaa
     1141 ctcgtccccg gcttgtcggc gcacccctat ttgagcggag tggaaaaagc ctgctttatg
     1201 agccacgccg tattgtggaa acaggcattg gacgaaggtc tgccgtatat cgccgtattt
     1261 gaggacgacg ttttactcgg cgaaggcgcg gagaaattcc ttgccgaaga cgcttggcta
     1321 aaagaacgct ttgaccccga ttccgccttt atcgtccgct tggaaacgat gtttatgcac
     1381 gtcctgacct cgccctccgg tgtggcggac tactgcgggc gtgcctttcc gctgttggaa
     1441 agcgaacact gggggacggc gggctatatc atttccaaaa aagcgatacg gtttttcctg
     1501 caacatttcg taatgttgca gccggaacag ataaaaccta tcgacttaat gatgttcagt
     1561 gattttttcg ataaggaggg gatgcctgtt tatcaggtca gtccggcctt atgcgcccaa
     1621 gagctgcatt atgccaagtt tcacgaccaa aacagcgcat tgggcagcct gatcgaacac
     1681 gaccgcctcc tgaaccgcaa acagcaaagg cgcgattccc ccgccaacac attcaaacgc
     1741 cgcctgatcc gcgccttgac caaaatcagc agggaaaggg aaaaacgccg gcaaaggcgc
     1801 gaacagttca ttgtgccttt ccaataaaag gaggagagat ggacatcgta tttgcagcag
     1861 acggcaggat gcggcggctg tttaccttga ggcaatactt cggcattttg cgccgattgc
     1921 tgaaaaaccg ttgaaaaacg ccgctttatc caacagacaa aaaacaggat aaattatgca
     1981 aaaccacgtt atcagcttag cttccgccgc agaacgcagg gcgcacattg ccgatacctt
     2041 cggcaggcac gacattccgt ttcagttttt cgacgcactg atgccgtctg aagaactgaa
     2101 tcgggtgatg gcggaattgg tgccgggatt ggcaaaacag cacctgttga gcgaagtgga
     2161 aaaagcctgc tttatgagcc acgccgtatt gtggaaacag gcattggatg aaggtctgcc
     2221 ctatgttgcc gtatttgagg atgatgtcct gcttggcaaa gacgcagaaa agttccttgc
     2281 cgaagatact tggttggaag agcgttttga taaggattct gcctttatcg ttcgtttgga
     2341 aacgatgttt gcgaaagtta ttgtcagacc ggataaagtc ctgaattatg agaaccggtc
     2401 atttcctttg ctggagagcg aacattgggg gacggctggc tatatcattt cgcgtgaggc
     2461 gatgcggttt ttcttggaaa ggtttgccgt tttgccggca gagtggatta aagcggtaga
     2521 ttggatgatg tttacttatt tctttgataa ggaggggatg cctgtttatc aggttaatcc
     2581 cgccttatgt acccaagaat tgcattatgc caagttcctc agtaaaaaca gtatgttggg
     2641 tagcgatttg gaaaaagata gggaacaaga aagaagacac cgccgttcgt tgaaggtgat
     2701 gtttgacttg aagcgtgctt tgggtaaatt cggtagggaa aagaagaaaa gaatggagcg
     2761 tcaaaggcag gcggagcttg agaaagctta cggcaggcgg gtcatatcgt tcaaatagtt
     2821 tgtgtaaaat atagcggatt aaaattagaa atggatacac tgtcattccc gcgaaagtgg
     2881 gaatccagtc cgttgagttt cagtcatttc cgataaatca ccgcaacgtt aaatttctag
     2941 attcccgctt ttgcgggaat gacggcgggg gatttttgtt tttccgacaa attcctaaaa
     3001 cttaaaattc cgttattccc gcgaaaacag aaaaccaaaa atagaaacct aaaatctcgt
     3061 cattcccgca aaaacagaaa accaaaaaac agcaacctaa aattcgtcat tcccgcgcag
     3121 gcgggaatcc agtccgttcg gtttcgcttg ttttaagttt cgggcaactt ccactttgtc
     3181 attcccgcgc aggcgggaat ccagtccgtt gagtttcagt catttcc
//
LOCUS       DAXHPV010000190         3210 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.190, whole genome shotgun sequence.
ACCESSION   DAXHPV010000190 DAXHPV010000000
VERSION     DAXHPV010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3210)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3210)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3210
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.190"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..593)
                     /locus_tag="ACFM6C_001914"
     CDS             complement(<1..593)
                     /locus_tag="ACFM6C_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0017013 - protein flavinylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HFC6159309.1"
                     /translation="MDRHFGRRRFLTVAAVAAAGAAVSFLPNPFAADDEKRNGDEKRN
                     ENVFFWKGVALGSGAELRLFGVDDRRAADLVNKVLAEVARLEKMFSLYREDSLISRLN
                     RDGYLTSPLADFLELLSLCRDIHALTEGAFDPTVQVLWKLYADYFAAHPDAETPPPQN
                     SVDEALKRVGFGKVSFDDREIRFAEKGMGLSLNGIAQG"
     gene            complement(604..1398)
                     /locus_tag="ACFM6C_001915"
     CDS             complement(604..1398)
                     /locus_tag="ACFM6C_001915"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004799 - thymidylate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HFC6159310.1"
                     /translation="MKAYLDLMRHVLDNGTDKSDRTGTGTRSVFGYQMRFDLGKGFPL
                     LTTKKLHLRSIIHELLWFLKGDTNIKYLKDNNVSIWDEWADENGDLGPVYGYQWRNWP
                     APDGRHIDQIANVVEQIKKNPDSRRLIVSAWNPALVDEMALPPCHALFQFYVADGKLS
                     CQLYQRSADIFLGVPFNIASYALLTMMMAQVCGLEAGEFVHTFGDAHLYRNHFEQTAL
                     QLEREPRALPVMKINPEVKDLFSFKFEDFELEGYDPHPHIKAAVSV"
     gene            1782..3116
                     /gene="gdhA"
                     /locus_tag="ACFM6C_001916"
     CDS             1782..3116
                     /gene="gdhA"
                     /locus_tag="ACFM6C_001916"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016639 - oxidoreductase activity, acting
                     on the CH-NH2 group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HFC6159311.1"
                     /translation="MTDLNTLFANLKQRNPNQEPFHQAVEEVFMSLDPFLAKNPKYTQ
                     QSLLERIVEPERVVMFRVTWQDDKGQVQVNRGYRVQMSSAIGPYKGGLRFHPTVDLGV
                     LKFLAFEQVFKNALTTLPMGGGKGGSDFDPKGKSDAEVMRFCQAFMTELYRHIGADTD
                     VPAGDIGVGGREIGYLFGQYKKIRNEFSSVLTGKGLEWGGSLIRPEATGYGCVYFAQA
                     MLQTRNDSFEGKRVLISGSGNVAQYAAEKAIQLGAKVLTVSDSNGFVLFPDSGMTEAQ
                     LAALIELKEVRRERVATYAKEQGLQYFENQKPWGVAAEIALPCATQNELDEEAAKTLL
                     ANGCYVVAEGANMPSTLGAVEQFIKAGILYAPGKASNAGGVATSGLEMSQNAIRLSWT
                     REEVDQRLFGIMQSIHESCLKYGKVGDTVNYVNGANIAGFVKVADAMLAQGF"
BASE COUNT          838 a          912 c          770 g          690 t
ORIGIN      
        1 ccttgcgcga tgccgttcaa ggacaaaccc ataccctttt cggcaaaacg gatttcacgg
       61 tcgtcaaacg agactttgcc gaagccgacc cgtttcaggg cttcatccac gctgttttga
      121 ggcggcggcg tttccgcatc gggatgagcg gcaaaataat cggcatacag tttccacaaa
      181 acctgaaccg tcggatcgaa tgccccttcc gtcagcgcgt gaatatcgcg gcacaggctc
      241 aacagttcca aaaaatccgc cagcggcgaa gtcagataac cgtcacggtt cagacggctg
      301 atcaggctgt cttcacggta aaggctgaac attttttcca aacgcgccac ttccgccaaa
      361 accttgttga ccaaatccgc cgcacgcctg tcgtccacac cgaacagacg gagctccgca
      421 ccggaaccca gtgcgacacc tttccagaaa aacacatttt cattgcgttt ttcatccccg
      481 ttgcgttttt catcatcggc ggcaaaagga ttcggcagga aagaaaccgc cgcgcccgcc
      541 gccgcaacgg cggcaaccgt cagaaaacgc ctgcgcccga aatgcctgtc catatacccc
      601 tcctcagacc gacactgccg ccttgatgtg cggatggggg tcgtagcctt ccaactcgaa
      661 atcttcaaac ttgaaggaaa acaaatcttt gacttcagga ttgattttca tcactggcaa
      721 ggcgcgcggt tcgcgttcca actgcaatgc ggtctgctcg aaatggttgc ggtacaaatg
      781 cgcgtcgcca aacgtatgga caaactcgcc cgcctccagc ccgcacactt gcgccatcat
      841 catggtcaac aatgcgtagc tggcaatatt aaacggcaca ccgaggaaaa tatccgcgct
      901 gcgctggtaa agctggcagg acagtttgcc gtcggcaacg taaaactgaa acagcgcgtg
      961 gcagggcggc aaggccattt catcgaccaa agccggattc cacgccgata caatcaggcg
     1021 gcgcgagtcg gggtttttct taatttgttc caccacattg gcgatttggt cgatatgcct
     1081 gccgtcgggc gcgggccagt tacgccactg gtagccgtaa accgggccta agtcgccgtt
     1141 ttcgtccgcc cactcgtccc aaatggaaac attgttgtcc tttaggtatt tgatattggt
     1201 atcgcctttg agaaaccaaa gcagctcgtg gataatcgag cgcaaatgca gctttttggt
     1261 cgtcagcagc ggaaaacctt tgcccaagtc aaaacgcatc tgataaccga atacggagcg
     1321 cgtgcccgta ccggtgcggt ctgatttgtc cgtaccgttg tcgaggacgt ggcgcatcaa
     1381 gtccaaatag gctttcatag cagtctttca tcaaattaaa cggcgcatat tgtaacattt
     1441 ccggataatg cccaaaacac ggatacaggc aggcaggatt gttggcaatt tcagtccttt
     1501 tccacagtaa aacccagtgg gaaaacaaaa ttaccttgat tggaatcaaa aaatctagtt
     1561 taattactta gaataaaatt tcaataatat ttttatttac gaaattaatt tatgattatt
     1621 gattaattat cggcaacaaa catcaaacat cgaaaacatg gaaaaaataa tgtcaacaat
     1681 ttttgccaaa tcgggcttgg catcagaaaa aaataggttt atattcccac ctacaaattt
     1741 gttttcccat tagtacacta tcaaccaaaa ggagtatccg aatgactgac ctgaacaccc
     1801 tttttgccaa cctcaaacaa cgcaatccca atcaggagcc gttccatcag gcggttgaag
     1861 aagtcttcat gagtctcgat ccgtttttgg caaaaaatcc gaaatacacc cagcaaagcc
     1921 tgctggaacg catcgtcgaa cccgaacgcg tcgtgatgtt ccgcgtaacc tggcaggacg
     1981 ataaagggca agtccaagtc aaccggggct accgcgtgca aatgagttcc gccatcggtc
     2041 cttacaaagg cggcttgcgc ttccatccga ccgtcgattt gggcgtattg aaattcctcg
     2101 cttttgaaca agtgttcaaa aacgccttga ccaccctgcc tatgggcggc ggcaaaggcg
     2161 gttccgactt cgaccccaaa ggcaaatccg atgccgaagt aatgcgcttc tgccaagcct
     2221 ttatgaccga actctaccgc cacatcggcg cggacaccga tgttccggcc ggcgacatcg
     2281 gtgtaggcgg gcgcgaaatc ggctacctgt tcggacaata caaaaaaatc cgcaacgagt
     2341 tttcttccgt cctgaccggc aaaggtttgg aatggggcgg cagcctcatc cgtcccgaag
     2401 cgaccggcta cggctgcgtc tatttcgccc aagcgatgct gcaaacccgc aacgatagtt
     2461 ttgaaggcaa acgcgtcctg atttccggtt ccggcaacgt ggcgcaatac gccgccgaaa
     2521 aagccatcca actgggcgcg aaagtgctga ccgtttccga ctccaacggc ttcgtcctct
     2581 tccccgacag cggtatgacc gaagcgcaac tcgccgcctt gatcgaattg aaagaagtcc
     2641 gccgcgaacg cgttgccacc tacgccaaag agcaaggtct gcaatacttt gaaaaccaaa
     2701 aaccgtgggg cgtcgccgcc gaaatcgccc tgccctgcgc gacccagaac gaattggacg
     2761 aagaagccgc caaaaccctg ttggcaaacg gctgctacgt cgttgccgaa ggtgcgaata
     2821 tgccgtcgac tttgggcgcg gtcgagcaat ttatcaaagc cggcatcctc tacgccccgg
     2881 gaaaagcctc caatgccggc ggcgtagcaa cttcaggttt ggaaatgagc caaaacgcca
     2941 tccgcctgtc ttggactcgt gaagaagtcg accaacgcct gttcggcatc atgcaaagca
     3001 tccacgaatc ctgtctgaaa tacggcaaag tcggcgacac agtaaactac gtcaatggtg
     3061 cgaacattgc cggcttcgtc aaagttgccg atgcgatgct ggcgcaaggc ttctaagcaa
     3121 acgccgccgc tccgcaaaca aaatgccgtc cgaaccgcaa atgctgttca gacggcattt
     3181 cattatccgc ccgttcgaat cgggtgatac
//
LOCUS       DAXHPV010000191         3191 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.191, whole genome shotgun sequence.
ACCESSION   DAXHPV010000191 DAXHPV010000000
VERSION     DAXHPV010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3191
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.191"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            351..974
                     /locus_tag="ACFM6C_001917"
     CDS             351..974
                     /locus_tag="ACFM6C_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HFC6159312.1"
                     /translation="MKKPTDTLPVNLQRRRLLCAAGTLLLSPLAQAGAQREETLADDV
                     ASVMRSSVGSINPPRLVFDNPKEGERWLSDMSARLARFVPDEEERRRLLVNIQYESSR
                     AGLDTQIVLGLIEVESAFRQYAISGVGARGLMQVMPFWKNYIGKPAHNLFDIRTNLRY
                     GCTILRHYRNLEKGNIVRALARFNGSLGSNKYPNAVLGAWRNRWQWR"
     gene            1085..2467
                     /locus_tag="ACFM6C_001918"
     CDS             1085..2467
                     /locus_tag="ACFM6C_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFC6159313.1"
                     /translation="MARDNRIQMFPHEWRASTTLSGVYALRMLGMFLVLPVLAVYAAS
                     LPGAEGNKTLVGLAMGIYGLTQALLQLPLGIASDKFGRKKTIYVGLIVFAAGSFLAAA
                     ADTLPMLVAARAIQGAGAVSAAVTALLADLTRDGVRTRAMAMIGLSIGLTFSVSLVVA
                     PVIADAVGVRGLFMLTGILTVISIGVVAWMTPDPEVSKLHEDTQAQPSRIGEVLKNRR
                     LLTLDFGIFALHAAQMALFTALPFAMTQLGLEKIQHWKVYLPSTITGLVVMVPLIIVG
                     ETRNKLKQVFILGIACIAAAQLGLLSGMRSVGLITAYLVVYFIGFNVLEASLPSMVSK
                     IAPSDLKGTAMGVYNTMQSLGLFAGGAAGGLLFQKYGFSGVFAFCSILMLLWLVIAVL
                     SPAPKPVKNLSYPVGGVWQVNQEGLYRALSELEGVEDIGFSFDGQTVYLKVLQKGFDQ
                     AAAEKIITGV"
     gene            2471..2995
                     /gene="ssb"
                     /locus_tag="ACFM6C_001919"
     CDS             2471..2995
                     /gene="ssb"
                     /locus_tag="ACFM6C_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HFC6159314.1"
                     /translation="MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQ
                     RVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRIQSRKYQGKDGIERTAYDIVANE
                     MKMLGGRNENSGGAPYEEGYGQSQEAYQRPAQQSRQPAPDAPSHPQEAPAAPRRQPVP
                     AAAPVEDIDDDIPF"
BASE COUNT          663 a          856 c          947 g          725 t
ORIGIN      
        1 atatagtgga ttaaatttaa atcagtacgg caaggcgagg caacgctgta ctggtttaaa
       61 tttaatctac tatatttccg cctgctgccg cccgaaaagc gtgatgcgct gatggtgctg
      121 ctgcataatc cggacgacgg ataaccggtg aaaatgggaa atgcccgggc ggtgttgcct
      181 gtgcctgttt ggacaagcgt tcttgagggc ggtaaaatca aggtttgccc gaaaagggca
      241 gggcgatatg ccgcgcttgg attttgtgcg cggtttttcg cgttggaagc aatcatgtct
      301 gtttgaatat ttaatgccgt ctgaaacgtc cggacgcgcc cccgttccct atgaaaaaac
      361 cgaccgatac cctacccgtt aatctgcaac gccgccgcct gttgtgtgct gccggcacgc
      421 tgttgctcag cccgctggca caagccggcg cgcaacgtga agaaacgctt gccgacgatg
      481 tggcttccgt gatgaggagt tccgtcggca gcataaatcc gccgaggctg gtgtttgaca
      541 atccgaaaga gggcgaacgt tggttgtccg acatgtcggc acgtttggca aggtttgtcc
      601 ccgatgagga ggagcggcgc aggctgctgg tcaatatcca gtatgaaagc agccgggccg
      661 gtttggatac gcagattgtg ttgggactga ttgaggtgga aagcgcgttc cgccagtatg
      721 caatcagcgg cgtcggtgcg cgcggtctga tgcaggttat gccgttttgg aaaaactaca
      781 tcggcaaacc ggcgcacaac ctgttcgaca tccgcaccaa cctgcgttac ggctgtacca
      841 tcctgcgcca ttaccggaat cttgaaaaag gcaacatcgt ccgcgcgctt gcccgcttta
      901 acggcagctt gggcagcaat aaatatccga acgccgtttt gggcgcgtgg cgcaaccgct
      961 ggcagtggcg ttgattttga acccgcgccg caaccgaaat acggcgaatc ctgtataatc
     1021 cgaaaatctg ttcactggaa gttcagacgg cattgcaact gttgatgccg tctgaaaaaa
     1081 tatgatggca agagacaacc gcatccaaat gtttccgcac gaatggcgcg ccagtacgac
     1141 gctttccggc gtgtacgcgc tgcgtatgct gggtatgttc ctcgtgctgc ccgtattggc
     1201 ggtgtatgcc gcctcgctgc ccggcgcgga aggcaacaaa acgctggtcg ggctggcaat
     1261 gggcatttac gggctgacac aggctctgct gcaactgcct ttgggcatcg cttccgacaa
     1321 gttcgggcgc aagaaaacca tttatgtcgg gctgattgtg tttgcggcgg gcagctttct
     1381 tgccgccgcc gccgatacgc tgcccatgct ggtcgccgca cgcgccatac agggtgcagg
     1441 ggcggtcagt gcggcggtta ccgcgctgct ggcggatttg acgcgcgacg gcgtacgtac
     1501 ccgcgcaatg gcgatgatcg gtttgagtat cggtttgacg ttttcggtca gcctcgtcgt
     1561 tgcccccgtg attgccgacg cggtcggcgt tcgcggactg tttatgctga ccggcattct
     1621 gaccgtcatc agcatcggcg tggtggcgtg gatgactccc gatcccgaag tttccaagct
     1681 gcacgaagat acgcaggcgc agccttcgcg cataggcgaa gttttgaaaa accgtaggct
     1741 gctgacgctc gatttcggca ttttcgccct gcacgccgcg caaatggcat tgtttaccgc
     1801 gctgcctttc gcgatgaccc agctcggttt ggaaaaaatc cagcactgga aagtctatct
     1861 gccctcgacc attacgggat tggtggtaat ggttccgctg attatcgtcg gtgagacgcg
     1921 caacaagctc aaacaggttt ttatcttggg tatcgcctgt attgcggcgg cgcagctcgg
     1981 tttgctgtcc ggtatgcgct cggtaggctt gattaccgct tatttggttg tttactttat
     2041 cggttttaat gtgttggaag cgagcctgcc gtctatggtt tccaaaatcg cgccgtccga
     2101 cctgaagggt acggcgatgg gcgtgtacaa cacgatgcag tcgctcggac tgtttgccgg
     2161 cggcgcggca ggcggtttgc tgtttcaaaa atacggcttt tccggcgtgt ttgccttttg
     2221 cagcatattg atgctgctgt ggctggtgat tgccgtttta tcgcctgcgc ccaagcccgt
     2281 caaaaacctc agttaccctg tcggcggcgt gtggcaggtc aatcaggaag ggttataccg
     2341 cgccttgtcg gagcttgagg gcgtggaaga catcggtttc agtttcgacg ggcagaccgt
     2401 ctatctcaaa gtgttgcaga agggtttcga tcaggctgcc gctgaaaaaa tcatcacagg
     2461 agtttaaaaa atgtcattga acaaagtcat ccttatcggc cgcctcggac gcgatcccga
     2521 agtgcgctat atgcccaacg gcgaggcggt gtgtaatttc agcgtcgcca ccagcgaaac
     2581 atggaacgac cgcaacggcc aacgtgtaga gcgcaccgag tggcacaaca tcacgatgta
     2641 ccgcaaactg gcggaaattg ccgggcaata cctcaaaaaa ggcgggctgg tttatttgga
     2701 aggcagaatc caaagccgca aataccaagg taaagacggc atcgagcgca ccgcttacga
     2761 tattgtcgcc aacgaaatga aaatgttggg cgggcgcaat gaaaacagcg gcggcgcacc
     2821 ttacgaggaa ggttacggtc agagtcagga ggcttaccaa cgccccgcgc agcaaagccg
     2881 gcagcctgcc cccgacgcgc cgtcccatcc tcaagaagca ccagccgcgc cgcgccgcca
     2941 acccgtgccg gccgccgccc cggtcgagga tattgacgac gacatcccgt tctgaatttt
     3001 acggcagcac atcctcgcgg agggaaatca taaaggacgg agaaacctta aaccttacgg
     3061 ggcagggttt ctcttttttg catttgtgcc ggcttgttgc tgccccctgc gttgggcgga
     3121 acgttgcgat tgcgccgttc tggcgttttg aggcagtgat gcctgccgca cgtccccgct
     3181 gttttcaggc g
//
LOCUS       DAXHPV010000192         3181 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.192, whole genome shotgun sequence.
ACCESSION   DAXHPV010000192 DAXHPV010000000
VERSION     DAXHPV010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3181)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3181)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3181
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.192"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            112..2880
                     /gene="tdfH"
                     /locus_tag="ACFM6C_001920"
     CDS             112..2880
                     /gene="tdfH"
                     /locus_tag="ACFM6C_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent zinc piracy receptor TdfH"
                     /protein_id="HFC6159315.1"
                     /translation="MRSSFRLKPICFYLMGVMLYHHSYAEDAGRAGSEAQIQVLEDVH
                     VKAKRVPKDKKVFTDARAVSTRQDIFKSSENLDNIVRSIPGAFTQQDKSSGIVSLNIR
                     GDSGFGRVNTMVDGITQTFYSTSTDAGRAGGSSQFGASVDSNFIAGLDVVKGSFSGSA
                     GINSLAGSANLRTLGVDDVVQGNNTYGLLLKGLTGTNSTKGNAMAAIGARKWLESGAS
                     VGVLYGHSRRSVAQNYRVGGGGQHIGNFGAEYLERRKQRYFVQDGQLKFNSDSGKWER
                     DLQRQQWKYPWYKKYENPQELQKYIEEHDKSWRENLAPQYDITPIDPSSLKQQSAGNL
                     FKLEYDGVFNKYTAQFRDLNTKIGSRKIINRNYQFNYGLSLNSYANLNLTAAYNSGRQ
                     KYPKGSKFTGWGLLKDFETYNNAKILDLNNTATFRLPRETELQTTLGFNYFHNEYGKN
                     RFPEELGLFFDGPDQDNGLYSYLGRFKGDKGLLPQKSTIVQPAGSQYFNTFYFDAALK
                     KDIYRLNYSTNTVGYRFGGEYTGYYSSEGEFKRAFGENSPTYKKHCNPSCGLYEPVLK
                     KYGKKRANNHSVSISADFGDYFMPFASYSRTHRMPNIQEMYFSQIGDSGVHTALKPER
                     ANTWQFGFNTYKKGLLKQDDTLGLKLVGYRSRIDNYIHNVYGKWWDLNGDIPSWVSST
                     GLAYTIQHRNFKDKVHKHGFELELNYDYGRFFTNLSYAYQKSTQPTNFSDASESPNNA
                     SKEDQLKQGYGLSRVSALPRDYGRLEVGTRWLGNKLTLGGAMRYFGKSIRATAEERYI
                     DGTNGGNTSNVRQLGKRSIKQTETLARQPLIFDFYAAYEPKKNLIFRAEVKNLFDRRY
                     IDPLDAGNDAATQRYYSSFDPKDKDEDVTCNADKTLCNGKYGGTSKSVLTNFARGRTF
                     LMTMSYKF"
     gene            2910..3149
                     /locus_tag="ACFM6C_001921"
     CDS             2910..3149
                     /locus_tag="ACFM6C_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159316.1"
                     /translation="MPSESPSDGICFPKRIILPQAYANPFYRIGNSKKNPFHSHAGKP
                     VDFGYFWLFRVIYESSFPQKRESRHSMLRQFIEND"
BASE COUNT          904 a          792 c          769 g          716 t
ORIGIN      
        1 caattgaaat cttcagacgg tatatcgaat ttacactttt taatgtttat gccgcctaaa
       61 aaaatgctaa tatatttctt aattgtctga ctgtttattg ttgaggaaaa tatgagatct
      121 tctttccggt tgaagccgat ttgtttttat cttatgggtg ttatgctata tcatcatagt
      181 tatgccgaag atgcagggcg cgcgggcagc gaggcgcaga tacaggtttt ggaagatgtg
      241 cacgtcaagg cgaagcgcgt accgaaagac aaaaaagtgt ttaccgatgc gcgtgccgta
      301 tcgacccgtc aggatatatt caaatccagc gaaaacctcg acaacatcgt acgcagcata
      361 cccggtgcgt ttacacagca agataaaagc tcgggcattg tgtctttgaa tattcgcggc
      421 gacagcgggt tcgggcgggt caatacgatg gtggacggca tcacgcagac cttttattcg
      481 acttctaccg atgcgggcag ggcaggcggt tcatctcaat tcggtgcatc tgtcgacagc
      541 aattttattg ccggactgga tgtcgtcaaa ggcagcttca gcggctcggc aggcatcaac
      601 agccttgccg gttcggcgaa tctgcggact ttaggcgtgg atgacgtcgt tcagggcaat
      661 aatacctacg gcctgctgct aaaaggtctg accggcacca attcaaccaa aggtaatgcg
      721 atggcggcga taggtgcgcg caaatggctg gaaagcggag catctgtcgg tgtgctttac
      781 gggcacagca ggcgcagcgt ggcgcaaaat taccgcgtgg gcggcggcgg gcagcacatc
      841 ggaaattttg gcgcggaata tctggaacgg cgcaagcaac gatattttgt acaagacggc
      901 cagttgaaat tcaattccga cagcggaaaa tgggagcggg acttgcaaag acaacagtgg
      961 aaatacccgt ggtataaaaa atacgaaaac ccccaagaac tgcaaaaata catcgaagag
     1021 catgacaaaa gctggcggga aaacctggcg ccgcaatacg acatcacccc catcgatccg
     1081 tccagcctga agcagcagtc ggcaggtaat ctgtttaaat tggaatacga cggcgtattc
     1141 aataaataca cggcgcaatt tcgcgattta aacaccaaaa tcggcagccg caaaatcatc
     1201 aaccgcaatt atcaattcaa ttacggttta tctttaaact catatgccaa cctcaatctg
     1261 accgcagcct acaattcggg caggcagaaa tatccgaaag ggtcgaagtt tacaggctgg
     1321 gggcttttaa aggattttga aacctacaac aacgcaaaaa tcctcgacct caacaacacc
     1381 gccaccttcc ggctgccccg tgaaaccgag ttgcaaacca ctttgggctt caattatttc
     1441 cacaacgaat acggcaaaaa ccgctttcct gaagaattgg ggctgttttt cgacggtccg
     1501 gatcaggaca acgggcttta ttcctatttg gggcggttta agggcgataa agggctgctg
     1561 ccccaaaaat caaccattgt ccaaccggcc ggcagccaat atttcaacac gttctacttc
     1621 gatgccgcgc tcaaaaaaga catttaccgc ttaaactaca gcaccaatac cgtcggctac
     1681 cgtttcggcg gcgaatatac gggctattac agctcggaag gcgaatttaa gcgggcattc
     1741 ggagaaaact cgccgacata caagaaacat tgcaacccga gctgcgggct ttatgaaccc
     1801 gtattgaaaa aatacggcaa aaagcgcgcc aacaaccatt cggtcagcat tagtgcggac
     1861 ttcggcgatt atttcatgcc gttcgccagc tattcgcgca cacaccgtat gcccaacatc
     1921 caagaaatgt atttttccca aatcggcgac tccggcgttc acaccgcctt aaaaccagag
     1981 cgcgcaaaca cttggcaatt tggcttcaat acctataaaa aaggactgtt aaaacaagat
     2041 gatacattag gattaaaact ggtcggctac cgcagccgca tcgacaacta catccacaac
     2101 gtttacggga aatggtggga tttgaacggg gatattccga gctgggtcag cagcaccggg
     2161 cttgcctaca ccatccaaca ccgcaatttc aaagacaaag tgcacaaaca cggttttgag
     2221 ttggagctga attacgatta tgggcgtttt ttcaccaacc tttcttacgc ctatcaaaaa
     2281 agcacgcaac cgaccaactt cagcgatgcg agcgaatcgc ccaacaatgc gtccaaagaa
     2341 gaccaactca aacaaggtta tgggttgagc agggtttccg ccctgccgcg agattacgga
     2401 cgtttggaag tcggtacgcg ctggttgggc aacaaactga ctttgggcgg cgcgatgcgc
     2461 tatttcggca agagcatccg cgcgacggct gaagaacgct atatcgacgg caccaacggg
     2521 ggaaatacca gcaatgtccg gcaactgggc aagcgttcca tcaaacaaac cgaaaccctt
     2581 gcccgccagc ctttgatttt tgatttttac gccgcttacg agccgaagaa aaaccttatt
     2641 ttccgcgccg aagtcaaaaa tctgttcgac aggcgttata tcgatccgct cgatgcgggc
     2701 aatgatgcgg caacgcagcg ttattacagc tcgttcgacc cgaaagacaa ggacgaagac
     2761 gtaacgtgta atgctgataa aacgttgtgc aacggcaaat acggcggcac aagcaaaagc
     2821 gtattgacca attttgcacg cggacgcacc tttttgatga cgatgagcta caagttttaa
     2881 aggcagcccg cgttttgtgg aaaaccgcaa tgccgtctga aagcccttca gacggcattt
     2941 gtttccccaa acgcatcatc ctgccgcaag cctatgccaa tccgttttat cgcatcggca
     3001 actcaaagaa aaatccattt cattcccacg cagggaagcc ggttgatttc ggttattttt
     3061 ggttgtttcg ggtaatttat gagtcgtcat tcccgcaaaa gcgggaatct agacattcaa
     3121 tgctaaggca atttatcgaa aatgactgaa actcaaaaaa ctggattccc actttcgtgg
     3181 g
//
LOCUS       DAXHPV010000193         3068 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.193, whole genome shotgun sequence.
ACCESSION   DAXHPV010000193 DAXHPV010000000
VERSION     DAXHPV010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3068)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3068)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3068
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.193"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..1443
                     /locus_tag="ACFM6C_001922"
     CDS             <1..1443
                     /locus_tag="ACFM6C_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deaminase domain-containing protein"
                     /protein_id="HFC6159317.1"
                     /translation="INGGSLKDNLGDAALGAIVSTVHGEVASKIKFNLSEDYITHKIA
                     HAIAGCAAAAANKGKCQDGAIGAAVGEIVGEALTNGKNPATLTAKEREQILAYSKLVA
                     GTVSGVVGGDVNTAANAAKVAIENNLLSQEEYALREKLIKKAKGKGLLSLDWGSLTEQ
                     EARQFIYLIEKDRYSNQLLDRYQKNPSSLNNQEKNILAYFINQTSGGNTAWAASILKT
                     PQSMGNLTIPSKDINNTLSKAYQTLSRYDSFDYKSAVAAQPALYLLNGPLGFSVKAAT
                     VAAGGYNIGQGAKAISNGEYLHGTVQVVNGTLMVAGSVSAQAAISAKPAPVTRYLSND
                     SAPALRQALTAESQRIRMKLPEEYRQIGNLAIAKIDVKGLPQRMEAFSSFQKGEHGFI
                     SLPETKIFKPISVDKYHNIASPPRGTLRNIDGEYKLLETIAQQLGNNRNVPGRIDLFT
                     ELKACQSCSNVILEFRNRYPNIQLNIFTGK"
     gene            1448..1831
                     /locus_tag="ACFM6C_001923"
     CDS             1448..1831
                     /locus_tag="ACFM6C_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159318.1"
                     /translation="MEKIKNYIEFKKLFKNITEKFVRDLDITLIEAAEYSIIEFEIYL
                     SEYPEDSTFIFTAWAIYLLENNCLNERGKDNFFIAEMKKCYQQTNLDRIKSIYSSSDY
                     HIFAKDVNKIQQTFKLNLANIMQQE"
     gene            2081..>3068
                     /locus_tag="ACFM6C_001924"
     CDS             2081..>3068
                     /locus_tag="ACFM6C_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-layer family protein"
                     /protein_id="HFC6159319.1"
                     /translation="MLKTPPMLAAELSGKTGVSISAPYANENSRIILSAADIAAENGK
                     IKLQSYGDQSYYAGQGELYTLERRSYKTGKWYNRKHITEVKEHKNAKPDAVNLSASQG
                     IDIKSGGSIDAYATVFDAPKGSINIEAGRKLTLYAVEELNYDKLDSHKKRKFLGITYD
                     KVHDTSTQQMQTALPSRVVAESANLQSGWDTKLQGTQFETTLGGAVIRAGVGDQARAD
                     AKIILEGIKSSIHTETVSSSKSALWQKQAGRGSNIETLQLPSFTGPVAPVLSAPGGYI
                     VDIPKGNLKTEIEKLAKQPEYAYLKQLQVAKNINWNQVQLAYDKWDYKQEGLT"
BASE COUNT         1024 a          666 c          650 g          728 t
ORIGIN      
        1 atcaacggcg gcagcctcaa agacaacttg ggcgatgccg cactgggtgc gatagtcagt
       61 accgtacacg gagaagtagc gagcaaaatc aaatttaatc tcagcgaaga ctacattacc
      121 cacaagattg cccatgccat agcgggctgt gcggcagcgg cggcgaataa gggtaagtgt
      181 caggatggtg cgatcggtgc ggctgtgggc gagatagtcg gggaggcttt gacaaacggc
      241 aaaaatcctg ccactttgac agctaaagaa cgcgaacaga ttttggcata cagcaaactg
      301 gttgccggta cggtaagcgg tgtggtcggc ggcgacgtga atacagcggc gaatgcggct
      361 aaagtcgcga ttgaaaataa cctattatct caagaagagt atgctcttag agaaaaattg
      421 atcaaaaaag ccaaagggaa aggcctatta tctttagatt ggggcagcct gaccgaacaa
      481 gaggcaaggc agtttatcta tttgattgag aaagatcgat attctaatca attgcttgac
      541 cgatatcaaa aaaatccaag tagtttaaat aatcaagaaa aaaatattct tgcatatttt
      601 attaaccaaa cctctggagg taacacagct tgggcagctt cgatactgaa aacgccccag
      661 tcaatgggta atctcactat tccttccaaa gatattaata acaccttatc gaaagcctat
      721 caaacattga gtcgttatga ttcttttgat tacaaatcag ctgttgccgc acaacctgca
      781 ctttacttat taaacggacc gcttggcttc agtgtcaaag cagctactgt ggcagcagga
      841 ggatataaca ttggacaggg agcgaaagca atctctaatg gagaatatct gcatggtaca
      901 gttcaggttg ttaatggcac attgatggtt gcaggatctg tatctgcaca ggctgcaata
      961 tcggccaagc ctgcacctgt tacccgttat ctgagcaatg acagtgctcc tgctttaaga
     1021 caagctttaa ctgctgaaag ccagagaatc cgcatgaaac tgccggaaga gtatcgacaa
     1081 atagggaatc ttgcgatagc aaaaattgat gttaaaggat taccgcaaag gatggaagca
     1141 tttagttctt tccaaaaagg ggaacatgga tttatttcgt tacctgaaac aaaaattttt
     1201 aaacctatat ctgttgataa atatcataat attgcctctc ctcctagagg aacattaaga
     1261 aatatagatg gagaatataa attacttgaa actatagcac agcaactcgg aaataatcgt
     1321 aatgtaccag gtagaattga tctatttaca gaattaaagg cctgtcaatc ttgcagcaat
     1381 gttattttag agtttagaaa tcgctatcca aatattcaat taaatatttt tacaggaaaa
     1441 tagaatcatg gaaaaaataa aaaattatat agaattcaag aaattattta aaaatataac
     1501 ggaaaaattt gtcagagatt tagatataac attaattgaa gcagctgaat attctataat
     1561 tgaattcgaa atttatttat ctgaatatcc ggaagatagt acatttattt ttacagcatg
     1621 ggcaatctat ctgttagaaa ataactgtct caatgaaaga ggaaaagata attttttcat
     1681 cgcggaaatg aaaaaatgtt atcaacaaac taatttggat agaataaaat ctatctattc
     1741 ttcgagtgac tatcatattt ttgctaagga tgtaaacaag attcaacaaa catttaaatt
     1801 aaatcttgcc aatatcatgc agcaagagta gcaactgtat ttttaacccc gtcgggcaaa
     1861 attaccaaaa acggtaaatc actaaaaata cttttatacc gccgccgcag caagctgtag
     1921 cctgcatgaa acctaaaatc catgcgtaag gtgtgtgctc cagcacgcac gcgttccatg
     1981 atttacggct caatgccgtc tgaaaagctc acaatttttc agacggcatt tgttatgcaa
     2041 gtaaatattc agattcccta tatactgccc agatgcgtgc gtgctgaaga caccccctat
     2101 gcttgctgca gaactttcgg gtaaaaccgg tgtgagcatt agcgcaccgt atgccaatga
     2161 gaacagccgc atcattttga gtgccgccga tatagccgca gaaaacggca aaatcaaact
     2221 gcaatcctac ggcgaccaat cctattacgc tggacagggc gaactctata ccttagaacg
     2281 ccgcagctac aaaaccggca aatggtacaa ccgcaaacac attaccgaag tcaaagaaca
     2341 caaaaacgcc aagcccgacg cagtaaacct cagcgcatcc caaggtatcg acatcaaatc
     2401 tggtggcagc atcgacgcct acgccaccgt attcgatgcc cccaaaggca gcattaacat
     2461 cgaagccggg cggaaattga cactctatgc cgtagaagag ctcaactacg acaaactaga
     2521 cagtcataag aaacgcaaat ttctcggcat tacttatgat aaggtacatg atacctctac
     2581 ccaacagatg caaactgcct taccaagccg tgtagtggct gaatcagcta atctgcaatc
     2641 aggttgggat accaagttac aaggtacgca gtttgaaacc acgctgggcg gcgcggtcat
     2701 ccgtgcaggc gtaggcgacc aggcacgggc cgatgccaag attatcctcg aagggatcaa
     2761 aagcagcatc cacacagaaa ccgtaagcag cagcaaatcc gccctctggc aaaaacaggc
     2821 aggacgcggc agcaacatcg aaaccctgca actgccaagt ttcaccggcc ccgttgcgcc
     2881 cgtactctct gctcccggcg gctacatcgt cgacattccg aaaggcaatc tgaaaaccga
     2941 aatcgaaaaa ctcgccaagc agcccgagta tgcttatttg aaacaacttc aagtagcgaa
     3001 aaacatcaac tggaatcagg tgcagcttgc ttacgataaa tgggactaca aacaggaggg
     3061 cttaaccg
//
LOCUS       DAXHPV010000194         3062 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.194, whole genome shotgun sequence.
ACCESSION   DAXHPV010000194 DAXHPV010000000
VERSION     DAXHPV010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3062)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3062)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3062
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.194"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..292)
                     /locus_tag="ACFM6C_001925"
     CDS             complement(<1..292)
                     /locus_tag="ACFM6C_001925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159320.1"
                     /translation="MIKDPSFPRRRESGLFGFSCFWVSGNFQIVIPAQAGIQTIGQRQ
                     YSKIIRKFEVLDSRFHGNDERLWESRPSGSGNIQRLSESLEVLDSRFHGNDGM"
     gene            complement(295..1287)
                     /gene="pdxA"
                     /locus_tag="ACFM6C_001926"
     CDS             complement(295..1287)
                     /gene="pdxA"
                     /locus_tag="ACFM6C_001926"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050570 - 4-hydroxythreonine-4-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HFC6159321.1"
                     /translation="MKQPVFAVTSGEPAGIGPDICLDLAFARLPCRCAVLGDKHLLRA
                     RAEALGKSVVLRDFDPESGGAPGEGELEVLHIPAAEAVESGQLNPANAAYVLQLLDTA
                     LAGISDGIFDGIVTAPLHKGIINDARASTGFFSGHTEYLAEKSGTGQVVMMLAGKGLR
                     VALVTTHLPLKDVAAAITQPLIESVARILHHDLKHKFGIKNPKILVAGLNPHAGEGGH
                     LGHEETDTIIPALENLRREGINLAGPYPADTLFQPFMLEGADAVLAMYHDQGLPVLKY
                     HSFGQGVNITLGLPFIRTSVDHGTALDLAATGRADSGSLITAVETAVEMARGSL"
     gene            1446..2873
                     /locus_tag="ACFM6C_001927"
     CDS             1446..2873
                     /locus_tag="ACFM6C_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005283 - amino acid:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine/glycine:cation symporter family protein"
                     /protein_id="HFC6159322.1"
                     /translation="MNENFTEWLHGWINAINDQMWSYLVYMLLGTGLFFTVTTGFVQF
                     RLFGRSIKEMLGGRKQGDDPHGITPFQAFVTGLASRVGVGNIAGVAIAIKVGGPGAVF
                     WMWVTALIGMSSAFVESSLAQLFKVRDYDNHHFRGGPAYYITQGLGQKWLGVLFALSL
                     IFCFGFVFEAVQTNTIADTVKAAWGWEPHYVGVALVILTAPIIFGGIRRVSKAAEIVV
                     PLMAVLYLFIALFIILTNIPMIPDVFGQIFSGAFKFDAAAGGLLGGLISQTMMMGIKR
                     GLYSNEAGMGSAPNAAAAAEVKHPVSQGMIQMLGVFVDTIIVCSCTAFIILIYQQPYG
                     DLSGAALTQAAIVSQVGQWGAGFLAVILFMFAFSTVIGNYAYAESNVQFIKSHWLITA
                     VFRMLVLAWVYFGAVANVPLVWDMADMAMGIMAWINLVAILLLSPLAFMLLRDYTAKL
                     KMGKDPEFKLSEHPGLKRRIKSDVW"
BASE COUNT          633 a          838 c          852 g          739 t
ORIGIN      
        1 acattccgtc attcccgtga aaacgggaat ctagaacctc taaactttca gataatcttt
       61 gaatattgcc gctgcccgaa ggtctggatt cccacaacct ttcgtcattc ccgtgaaaac
      121 gggaatctag aacctcaaac tttcggataa tctttgaata ttgccgctgt ccaatggtct
      181 ggattcccgc ctgcgcggga atgacgattt ggaaattacc cgaaacccaa aaacaactga
      241 aaccgaacag accggattcc cgcctgcgcg gaaatgacgg gtcttttatc atctttaaag
      301 gctgccgcgc gccatctcga cggcggtctc cacggcagtt atcaggctgc cggaatccgc
      361 cctgccggtt gccgccaaat caagcgcggt gccgtgatcg acggaggtgc ggataaaggg
      421 cagacccagc gtgatgttca cgccctgtcc gaagctgtgg tatttcaaca cgggcagccc
      481 ttggtcgtgg tacatcgcca atacggcatc cgcaccttcg agcataaacg gttggaacaa
      541 ggtatccgcc ggatacgggc cggcgaggtt tatcccttcg cggcgcaggt tttcaagcgc
      601 ggggataatg gtgtcggttt cttcgtgtcc gaggtgtccg ccctcgccgg cgtgggggtt
      661 gagtccggcg actaggattt tgggattttt gatgccgaat ttgtgtttta agtcgtgatg
      721 cagaatgcgt gcgacgcttt caatcagcgg ttgcgtgatg gcggcggcaa cgtctttcag
      781 cggcaggtgg gtcgttacga gggcgacgcg caggcctttg ccggcaagca tcatcacaac
      841 ctgccccgtg ccgctttttt ccgccagata ttcggtgtgt ccgctgaaaa aacctgtgct
      901 tgcgcgcgcg tcgttgatga tgcctttgtg cagcggcgcg gtaacgatgc cgtcgaaaat
      961 gccgtctgaa atgcctgcga gcgcggtgtc caaaagttgc agcacatagg cggcgttggc
     1021 gggattaagc tgcccggact caaccgcttc ggcggcaggg atgtgcagca cttccagctc
     1081 gccttctccg ggtgcgccgc ctgattccgg atcgaagtcg cgcaggacga cgcttttgcc
     1141 caaggcttcg gcgcgcgcgc gcaacaggtg tttgtcgccc aataccgcgc agcggcaggg
     1201 caggcgtgca aacgccaagt ccaaacaaat atcggggccg atgccggcag gctcgccgga
     1261 agtaacggca aaaacaggct gtttcatcgt gtttgctcca aacaaaatgc gattctaacg
     1321 ccgcagccgc gcggcgatgt aaatttttct gattttgttg acaatctgct agaatagaag
     1381 tttacaaaat ttaaaccctg cttacatacc gccatatgtg cgggtttcaa ctttaaggaa
     1441 gcgatatgaa cgagaacttt accgaatggc tgcacggctg gataaacgcc atcaacgacc
     1501 aaatgtggtc atacttggtt tatatgcttt tgggtacggg gcttttcttc accgtaacca
     1561 cgggctttgt ccaattccgc ctgttcgggc gcagcatcaa agaaatgctc ggcggccgca
     1621 aacaggggga cgaccctcac ggcatcacgc cgtttcaggc atttgtaacc ggccttgcca
     1681 gccgcgtggg cgtgggcaat atcgcgggcg tggcaatcgc catcaaagtc ggcgggccgg
     1741 gcgcggtgtt ctggatgtgg gtaaccgcct taatcggtat gagttcggcg tttgtcgaat
     1801 cttcgctggc gcagctcttt aaagtccgcg actacgacaa ccaccacttc cgtggcggcc
     1861 ctgcctacta catcactcaa gggctggggc agaaatggct gggcgtgttg ttcgccctga
     1921 gcctgatttt ctgtttcggc tttgtgtttg aagccgtaca gaccaatacc atcgccgata
     1981 ccgtcaaagc ggcgtggggc tgggagcctc attatgtcgg cgttgccctg gtgattttaa
     2041 ccgcgccgat tatcttcggc ggcatcaggc gcgtatctaa agcggcggaa atcgtcgtcc
     2101 ccctgatggc ggttttgtac ctctttatcg cgcttttcat cattttgacc aatattccga
     2161 tgattccgga cgtgttcggt cagatttttt cgggcgcgtt caaattcgac gcggcagcag
     2221 gcggcttact cggcggtctg atttcgcaaa cgatgatgat gggcatcaaa cgcggcctgt
     2281 attccaacga ggcgggtatg ggttccgcgc cgaacgccgc cgccgccgcc gaagtgaaac
     2341 accctgtttc acaaggtatg attcaaatgc tgggcgtgtt tgtcgatacc atcatcgttt
     2401 gttcttgcac cgccttcatc atcttgattt accaacagcc ttacggcgat ttgagcggtg
     2461 cggcgctgac gcaggcggcg attgtcagcc aagtggggca atggggcgcg ggcttcctcg
     2521 ccgtcatcct gtttatgttt gccttttcca ccgttatcgg caactatgcc tatgccgagt
     2581 ccaacgtcca attcatcaaa agccattggc tgattaccgc cgtcttccgt atgctggttt
     2641 tggcgtgggt ctatttcggc gcggttgcca atgtgccttt ggtctgggat atggcggata
     2701 tggcgatggg cattatggcg tggatcaacc ttgtcgccat cctgctgctc tcgccactgg
     2761 cgtttatgct gctgcgcgat tacaccgcca agctgaaaat gggcaaagac cccgagttca
     2821 aactttccga acatccgggc ctgaaacgcc gtatcaaatc cgacgtttgg taaatcccgc
     2881 ccttaccgga gccgcttccc cgcgaagcgg cttttccctt tccgcacact gtaaaaacag
     2941 ggcgaacaag cgtacaatcc caacccttta cttttgaatc catttcgttt ttcagacggc
     3001 atattgaata tagtggttta acaaaaatca ggacaaggcg acgaagccgc agacagtaca
     3061 ag
//
LOCUS       DAXHPV010000195         2968 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.195, whole genome shotgun sequence.
ACCESSION   DAXHPV010000195 DAXHPV010000000
VERSION     DAXHPV010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2968)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2968)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2968
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.195"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            123..1667
                     /gene="purF"
                     /locus_tag="ACFM6C_001928"
     CDS             123..1667
                     /gene="purF"
                     /locus_tag="ACFM6C_001928"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HFC6159323.1"
                     /translation="MCGVLGLVSHEPVNQLLYDGLQMLQHRGQDAAGIATAEGGTFHM
                     HKGKGMVREVFRTRNMRDLVGNAGIAHVRYPTAGNADSSAEAQPFYVSSPFGIVLAHN
                     GNLTNTAELYENVCNKHLRHVNTSSDSEVLLNVFAHELRREVSKNADPHRLNADNIFN
                     AVAEVHRLVRGAYGVVAMIAGYGMLAFRDPYGIRPLVLGSQTDSEGRKSYAVASESVA
                     FNALTYDLERDIRPGEAVFVGFDGTIITRQCSDRAKLSPCLFEYVYFARPDSVIDGVS
                     VYQSRLDMGVSLAEKIKRELPVDGIDVVMPIPDTSRPSAMELAVHLNKPYREGLIKNR
                     YIGRTFIMPGQATRKKSVRQKLSPMETEFAGKSVLLVDDSIVRGTTSREIVEMVRAAG
                     ARKVYIASAAPEVRYPNVYGIDMPTREELIANGRSAAEIAAEIGADGIVFQDLGDLEA
                     VVKALNPKIESFDSSCFNGIYQTGDIDDAYLDRLSAEKSGCGGLKIHPSRMEHSISIS
                     DAGDEE"
     gene            1767..2258
                     /gene="greB"
                     /locus_tag="ACFM6C_001929"
     CDS             1767..2258
                     /gene="greB"
                     /locus_tag="ACFM6C_001929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HFC6159324.1"
                     /translation="MSTETKNYITPAGWQALKDELYRLVNKERPEIVQIVNWAAGNGD
                     RSENGDYLYGKRRMREIDRRIRFLTKRLESAVVVDPELREATDQVFFGATVGLLRGDG
                     REQTVKIVGIDEIDTAQNKISWISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI
                     KID"
     gene            2317..2943
                     /locus_tag="ACFM6C_001930"
     CDS             2317..2943
                     /locus_tag="ACFM6C_001930"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004640 - phosphoribosylanthranilate
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HFC6159325.1"
                     /translation="MRKIRTKICGITTLEDAAAAAAAGADAVGLVFFQGSSRAVDIAR
                     AKKITAALPPFVSVVALFVNESAQNIRRILAEVPIHIIQFHGDEDDAFCRQFDRPYIK
                     AIRVQTASDIRNAADRFPDAQALLFDAYHPSEYGGTGHRFDWTLLAEYSGKPWVLAGG
                     LTPENVGEAVRITGAEAVDVSGGVEASKGKKDPAKVAAFIATANRLSR"
BASE COUNT          711 a          911 c          777 g          569 t
ORIGIN      
        1 cttattctcc ataaacccac ctatctgtcc ttcgctcaaa tattgtcaac aattcaggca
       61 aaaaaccacc gtttacttta taattccgtt ttacccttaa acctcgaatc ggagaagacg
      121 atatgtgcgg cgtattaggt ttggtcagtc atgaacccgt gaaccagctt ctgtacgacg
      181 gtttgcagat gttgcagcac agggggcagg atgcggcggg cattgcaacg gcggaaggcg
      241 gtaccttcca tatgcacaaa ggcaaaggca tggtgcgcga agtgttccgc acacgcaata
      301 tgcgcgattt ggtcggcaac gccggcatcg cccacgtccg ttatcctact gcgggcaacg
      361 ccgacagcag cgcggaggcg cagcctttct acgtcagctc gccgttcggc atcgttttgg
      421 cgcacaacgg caatctcacc aacacggccg aactgtatga aaacgtgtgc aacaaacacc
      481 tgcgccacgt caacaccagc tccgattccg aagtcttgct caacgtattc gcgcacgaat
      541 tacgccgcga agtctctaaa aacgccgacc cgcaccggct caatgccgac aatattttca
      601 acgccgttgc cgaagtccac cgcctggtgc gcggcgcata cggcgtggtt gccatgattg
      661 cgggctacgg tatgctcgcc ttccgcgacc cttacggcat ccgcccgctg gtattgggtt
      721 cgcaaaccga cagcgaaggc agaaaatcct atgccgtcgc ctccgaatcc gtcgccttca
      781 acgcgcttac ctacgatttg gaacgcgata tccggccggg cgaagcggta tttgtcggct
      841 ttgacggcac aatcatcacc cgacaatgca gcgaccgcgc caaactcagc ccctgccttt
      901 ttgaatatgt ttattttgcc cgccccgact ctgtgattga cggcgtatcc gtttaccagt
      961 cgcgcttgga tatgggcgtg tccttggcgg aaaaaatcaa acgcgagctg cccgtggacg
     1021 gcatcgacgt tgtaatgccc atccccgaca ccagccgccc cagcgcgatg gagcttgccg
     1081 tccacctcaa caaaccctac cgcgagggct tgattaaaaa ccgctatatc ggccgcacct
     1141 ttattatgcc cggccaggcg acgcgcaaaa aatccgtgcg ccaaaaactc agcccgatgg
     1201 aaaccgaatt tgcaggcaaa agcgtgttgc tggtggacga ctccatcgtg cgcgggacga
     1261 ccagccgcga aatcgtcgaa atggtacgcg cggctggcgc gcgcaaagtc tatatcgcct
     1321 ccgccgcgcc cgaagtgcgc tatcccaacg tatacggcat cgatatgccc acacgcgaag
     1381 agttgattgc caatgggcgc agcgcggcgg aaattgccgc cgaaatcggc gcggacggca
     1441 tcgtgtttca agacttgggc gatttggaag ccgtcgtcaa agcactcaat ccgaaaatcg
     1501 aatctttcga ttcgtcctgt ttcaacggca tttatcaaac cggcgacatc gatgatgcct
     1561 acctcgaccg cctgtctgcc gagaaatccg gctgcggcgg cctgaaaatc cacccgagca
     1621 ggatggaaca cagcatcagc atcagcgatg cgggcgacga agaataaggc ttcccaaacc
     1681 gcgatgccgt ctgaaatccg aacgccgggt tttcagacgg catttcccat atcggcatca
     1741 catttcccat ttcatccgca cgcaatatga gtaccgaaac caaaaactac attacgcccg
     1801 ccggatggca ggcattgaaa gacgagcttt accggctggt caacaaagaa cgccccgaaa
     1861 tcgtccaaat cgtcaactgg gcggcaggca acggcgaccg cagcgaaaac ggcgactatc
     1921 tttacggcaa acgccgtatg cgcgaaatcg accgccgcat ccgtttcctg accaaacgtt
     1981 tggagtctgc cgtcgtcgtc gatcccgaat tgcgcgaagc gaccgaccaa gtgtttttcg
     2041 gcgcgacggt cgggctgttg cgcggcgacg ggcgcgagca aaccgtcaaa attgtcggca
     2101 tcgatgaaat cgataccgcg caaaacaaaa tttcttggat ttcgccgttg gcgcgttgcc
     2161 tgattaaagc gcgcgaaggc gacgaagtgg ttttgaacac gccggaaggg cgtgaggaaa
     2221 ttgaaatcct ttctgtcgaa tacatcaaaa tcgactgatc gggaatgccg tctgaaacgg
     2281 cacaaacgca tcgtttccca aataaaggaa taccgaatga ggaaaatccg caccaaaatc
     2341 tgcggcatca ccacactgga agacgcagcg gccgccgcag cggcaggtgc ggatgccgtc
     2401 gggctggtct ttttccaagg cagcagccgg gccgtcgata ttgcccgcgc caaaaaaatc
     2461 accgccgcac tgccgccgtt tgtcagcgtt gtcgcccttt tcgtcaacga aagcgcgcaa
     2521 aacatccgcc gcatccttgc cgaagtgccg atacacatca tccaattcca cggcgacgaa
     2581 gacgacgcat tctgccgcca gttcgaccgc ccctatatca aggccattcg tgttcagacg
     2641 gcatcagaca tccgaaacgc cgccgaccgc ttccccgacg ctcaggcact gctgttcgat
     2701 gcctaccacc cttcggaata cggcggcacc ggacaccgct tcgactggac gctgctggcg
     2761 gaatattcgg gcaaaccgtg ggtgcttgcc ggcgggctga cccctgaaaa cgtcggcgaa
     2821 gccgtccgca tcaccggagc ggaagcggtc gacgtatccg gcggcgtgga agcgtctaaa
     2881 ggcaaaaaag acccagccaa agtcgccgcc tttatcgcaa ccgccaaccg cctatcccgt
     2941 taaagcaaca aaaattgccg ctggaatg
//
LOCUS       DAXHPV010000196         2946 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.196, whole genome shotgun sequence.
ACCESSION   DAXHPV010000196 DAXHPV010000000
VERSION     DAXHPV010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2946
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.196"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(107..271)
                     /locus_tag="ACFM6C_001931"
     CDS             complement(107..271)
                     /locus_tag="ACFM6C_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159326.1"
                     /translation="MRFVVLASLQAAFSGRSCNESVIGFDVSLRLTALSLTLSHRERG
                     RVAVASLFAA"
     gene            302..625
                     /locus_tag="ACFM6C_001932"
     CDS             302..625
                     /locus_tag="ACFM6C_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003775941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HFC6159327.1"
                     /translation="MQNETINLKQHLAAIKEYWQPEIINRHGFQFRLVKLLGDYGWHT
                     HGYSDKVLFAVEGDMAVDFADGGSMTIREGEMAVVPKSVSHRPRSENGCSVVLIELSD
                     PSEAV"
     gene            985..1182
                     /locus_tag="ACFM6C_001933"
                     /pseudo
     CDS             985..1182
                     /locus_tag="ACFM6C_001933"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1976..2917
                     /locus_tag="ACFM6C_001934"
     CDS             1976..2917
                     /locus_tag="ACFM6C_001934"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HFC6159328.1"
                     /translation="MPTRSLHRLPKPSRNTAPGGKSGGYLATRFRAADNLSLILGGRY
                     SRYRTGSYDSRTQGMTYVSANRFTPYTGIVFDLTGNLSLYGSYSSLFVPQSQKDEHGS
                     YLKPVTGNNLEAGIKGEWLEGRLNASAAVYRARKNNLATAAGRDLSGNTYYRAANQAK
                     THGWEIEVGGRITPEWQIQAGYSQSKTRDQDGSRLNPDSVPERSFKLFTAYHFAPEAP
                     SGWTIGAGVRWQGETHTDPATLRIPNPAAKARAADNSRQKAYAVADIMARYRFNPRAE
                     LSLNVDNLFNKHYRTQPDRHSYGALRTVNAAFTYRFK"
BASE COUNT          712 a         1043 c          746 g          445 t
ORIGIN      
        1 gcttccttcg aaagctccgt tttcagacga ccttttggaa caccacaggc acacgcatcg
       61 aacggctgaa tcaaagattc agaccgatgg cagtccgcac ccgagtttat gcggcaaaca
      121 gcgaggctac ggcaacccgc cccctctccc tgtgggagag ggttagggag agggcggtaa
      181 gccgcaggct tacatcaaag ccgataacgc tttcgttaca actccgccca ctgaaagcag
      241 cctgcaacga agccaaaacg acaaaccgca tcgtaaacca cccaacccat aggagaaccc
      301 catgcaaaac gaaaccatca acctgaaaca gcaccttgcc gccatcaaag aatactggca
      361 gcccgaaatc atcaaccgcc acgggttcca attccgtttg gtcaaacttt tgggcgatta
      421 cggctggcat acgcacggat acagcgacaa agtgctgttt gccgtggagg gcgacatggc
      481 ggtggacttc gccgacggcg gcagcatgac gatacgcgag ggcgagatgg cggtcgtgcc
      541 gaagtcggtg tcgcaccgcc cgcgttcgga aaacggctgc tcggtggtgc tgattgagtt
      601 gtccgacccg tccgaggccg tctgaaaacg aagtttccga aggaagctga gtttctgcga
      661 agctaaaagc agcctgcacc ttcaatcaat atgccgaaaa tacaacccca ccgcacacca
      721 acacacaaag gaaatcccat gacacgcttc aaatattccc tgctgtttgc cgccctgttg
      781 cccgtgtacg cgcaggccga tgtttctgtt tcagacgacc ccaaaccgca ggaaagcact
      841 gaattgccga ccatcaccgt taccgccgac cgcaccgcga gttccaacga cggctacact
      901 gtttccggca cgcacacccc gctcgggctg cccatgaccc tgcgcgaaat cccgcagagc
      961 gtcagcgtca tcacatcgca acaaatgcgc gaccaaaaca tcaaagcgct cgaccgcgcc
     1021 ctgttgcagg cgaccggcac cagccgccag atttacggct ccgaccgcgc gggctacaac
     1081 tacctgttcg cgcgcggcag ccgcatcgcc aactaccaaa tcaacggcat ccccgttgcc
     1141 gacgcgctgg ccgatacggg caatgccaac accgccgcct atgagcgcgt agaagtcgtg
     1201 cgcggcgtgg cggggctgct ggacggcacg ggcgagcctt ccgccaccgt caatctggtg
     1261 cgcaaacgcc cgacccgcaa gccattgttt gaagtccgcg ccgaagcggg caaccgcaaa
     1321 catttcgggc tgggcgcgga cgtatcgggc agcctgaaca ccgaaggcac gctgcgcggc
     1381 cgcctggttt ccaccttcgg acgcggcgac tcgtggcggc agcgcgaacg cagccgcgat
     1441 gccgaactct acggcatttt ggaatacgac atcgcaccgc aaacccgcgt ccacgcaggc
     1501 atggactacc agcaggcgaa agaaaccgcc gacgcgccgc tcagctacgc cgtgtacgac
     1561 agccaaggtt atgccaccgc cttcggcccg aaagacaacc ccgccacaaa ttgggcgaac
     1621 agccgccacc gtgcgctcaa cctgttcgcc ggcatcgaac accgcttcaa ccaagactgg
     1681 aaactcaaag ccgaatacga ctacacccgc agccgcttcc gccagcccta cggcgtagca
     1741 ggcgtgcttt ccatcgacca caacaccgcc accaccgacc tgattcccgg ttattggcac
     1801 gccgacccgc gcacccacag cgccagcgtg tcattgatcg gcaaataccg cctgttcggc
     1861 cgcgaacacg atttaatcgc gggtatcaac ggttacaaat acgccagcaa caaatacggc
     1921 gaacgcagca tcatccccaa cgccattccc aacgcctacg aattttcccg cacgggtgcc
     1981 tacccgcagc ctgcatcgtt tgcccaaacc atcccgcaat acggcaccag gcggcaaatc
     2041 cggcggctat ctcgccaccc gtttccgcgc cgccgacaac ctttcgctga tactcggcgg
     2101 cagatacagc cgttaccgca ccggcagcta cgacagccgc acacaaggca tgacctatgt
     2161 gtccgccaac cgtttcaccc cctacacagg catcgtgttc gacctgaccg gcaacctgtc
     2221 tctttacggc tcgtacagca gcctgttcgt cccgcaatcg caaaaagacg aacacggcag
     2281 ctacctgaaa cccgtaaccg gcaacaatct ggaagccggc atcaaaggcg aatggcttga
     2341 aggccgtctg aacgcatccg ccgccgtgta ccgcgcccgt aaaaacaacc tcgccaccgc
     2401 agcaggacgc gacctgagcg gcaacaccta ctaccgcgcc gccaaccaag ccaaaaccca
     2461 cggctgggaa atcgaagtcg gcggccgcat cacgcccgaa tggcagatac aggcaggtta
     2521 cagccaaagc aaaacccgcg accaagacgg cagccgcctg aaccccgaca gcgtacccga
     2581 acgcagcttc aaactcttca ctgcctacca ctttgccccc gaagccccca gcggctggac
     2641 catcggcgca ggcgtgcgct ggcagggcga aacccacacc gaccctgcca cgctccgcat
     2701 ccccaacccc gccgccaaag cccgcgccgc cgacaacagc cgccaaaaag cctacgccgt
     2761 cgccgacatc atggcgcgtt accgcttcaa tccgcgcgcc gaactgtcgc tgaacgtgga
     2821 caatctgttc aacaaacact accgcaccca gcccgaccgc cacagctacg gcgcactgcg
     2881 gacagtgaac gcggcgttta cctatcggtt taaataagat cgtctgaaaa cggagtttct
     2941 gcgaag
//
LOCUS       DAXHPV010000197         2827 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.197, whole genome shotgun sequence.
ACCESSION   DAXHPV010000197 DAXHPV010000000
VERSION     DAXHPV010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2827
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.197"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(38..514)
                     /gene="greA"
                     /locus_tag="ACFM6C_001935"
     CDS             complement(38..514)
                     /gene="greA"
                     /locus_tag="ACFM6C_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HFC6159329.1"
                     /translation="MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSE
                     NAEYEAAKERQGFIEGRISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEH
                     VTYQIVGEDEADIKQGKIYVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI"
     gene            909..2210
                     /gene="aroA"
                     /locus_tag="ACFM6C_001936"
     CDS             909..2210
                     /gene="aroA"
                     /locus_tag="ACFM6C_001936"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003866 - 3-phosphoshikimate
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HFC6159330.1"
                     /translation="MTESVRLPVARLKPSTVALPGSKSISNRTLLLAALSDNACEIHS
                     LLKSDDTDRMLEALDKLGVEIEYLAEDRLKVHGTGGRFPNRTADLFLGNAGTAFRPLT
                     AALAVLGGDYHLHGVARMHERPIGDLTDALRIAGADVEYLGKEHYPPLHIGERQDNGE
                     RVIPIKGNVSSQFLTALLMALPLTGQAFEIRMVGELISKPYIDITLKLMAQFGVQVIN
                     EGYRVFKIPADAHYHAPEHLHVEGDASSASYFLAAGLIAATPVRVTGIGANSIQGDVA
                     FAHELEKIGADVVWGENFVEVSRPKERAVQAFDLDANHIPDAAMTLAIVALATGQTCT
                     LRNIGSWRVKETDRIAAMANELRKLGAKVVEEAEAIHITPPETLTPDAVIDTYDDHRM
                     AMCFSLVSLLGVPVVINDPKCTHKTFPTYFEVFSSLTETAE"
     gene            complement(2248..2781)
                     /locus_tag="ACFM6C_001937"
     CDS             complement(2248..2781)
                     /locus_tag="ACFM6C_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HFC6159331.1"
                     /translation="MFPPDKTLFLCLSALLLASCGTTSGKHRQPKPKQTVRQIQAVRI
                     SHIDRTQGSQELMLHSLGLIGTPYKWGGSSTATGFDCSGMIQFVYKNALNVKLPRTAR
                     DMAAASRKIPDSRLKAGDLVFFNTGGAHRYSHVGLYIGNGEFIHAPSSGKTIRTEKLS
                     TPFYAKNYLGAHTFFTE"
BASE COUNT          594 a          776 c          777 g          680 t
ORIGIN      
        1 ttcctgcgtg tgtcgggtgt atcgaaatca agccgaatca aatatatcgg acttcgataa
       61 tgtcgtattc gcgcacgccg cccggggctt ggacttccgc cgtatccccc tcttccttgc
      121 cgattaaggc gcgggcgatg ggtgagccga catagatttt gccctgtttg atgtcggctt
      181 cgtcttcgcc gacaatttga taggtaacgt gttcttccgt ttccaagtct tccagcgtaa
      241 ccgtcgtacc gaacacgatt ttgccttcgg cgtggatttc ggtcggattg atgatgtggg
      301 caacggaaag tttgtgttcc agctcggaaa tgcggccctc gataaagcct tggcgttctt
      361 tggcggcttc gtattcggcg ttttcggaca aatcgccgtg cgaacgggct tcggcaatcg
      421 cttcgatcac ttcgggacgc gccacgcttt tgagctgctg caattcctgt ttcagcaatt
      481 ccgcaccgcg tacggtcagg gggatttttt gcatcggtct tttttctcca tattccggca
      541 caccggtttg cggcagcaag cataccgcgt accgtcttgt tttgtgcgtc cggatattaa
      601 aataaaaata caagccgccc ggaaaatcgg cggcttgtct gtcgttgaac agcggctatt
      661 ctaccaaatt ctatgaaatt ggcaatcgtg ccgcgccgcc ggcaaacgcg ccatgtccgc
      721 aacaaaagct gaaaatatgc cgacaaagaa attttagaaa caaaaaattt aaaaataatc
      781 aattttcggc ataaaaaacc acatttacgg actttaaaac cgaaaatgcc aaacctgaga
      841 tttttcatac agcatttgca ccagtataat gcaggctgtt tttatcttta taatattgac
      901 gttttgccat gaccgaatcc gtccgcctcc ccgtcgcccg tctcaaacct tccaccgtcg
      961 ccctgcccgg ctccaaaagc atcagcaacc gcaccctgct gcttgccgcc ttgtccgaca
     1021 atgcttgcga aatccattcc ctgctcaaat ccgacgatac cgaccgtatg ctcgaagcac
     1081 tcgataaact cggcgttgaa atcgaatatc ttgccgaaga ccgtctgaaa gtgcacggca
     1141 cgggcggacg cttccccaac cgcactgccg atttgttttt gggcaacgcg ggcacggcgt
     1201 tccgcccgct gaccgccgcg cttgccgttt tgggcggcga ttatcatttg cacggcgttg
     1261 cgcgtatgca cgaacgcccc atcggcgatt tgaccgatgc actgcggatt gccggggccg
     1321 atgtcgaata tctcggcaag gaacactatc cgccgcttca tatcggcgaa cgccaagaca
     1381 acggcgagcg cgtgattccg attaaaggca atgtgtccag ccagtttctg accgcccttt
     1441 taatggcgtt accgctgacc gggcaggcgt ttgaaatccg tatggtcggc gagttaattt
     1501 ccaagcccta tatcgacatt actttaaaac tgatggcgca attcggcgta caggttatca
     1561 atgaaggcta ccgcgtcttc aaaattcccg ccgatgcgca ctaccacgcg cccgaacact
     1621 tgcacgtcga aggcgatgcc tctagcgcgt cctacttcct cgcagccggt ttgattgccg
     1681 ccacgcccgt ccgcgtgacc ggcatcggcg caaacagcat acagggcgat gtcgcctttg
     1741 cccacgaact ggaaaaaatc ggggcggacg tggtttgggg cgaaaacttc gtcgaagtct
     1801 cgcgcccgaa agaacgtgcc gtccaagcct ttgatttgga tgcaaaccat atccccgatg
     1861 ccgccatgac cctcgccatc gtcgcgcttg ccacagggca aacctgtacg ctgcgcaata
     1921 tcggttcgtg gcgcgtcaaa gagaccgacc gcatcgccgc aatggcaaac gagttgcgca
     1981 aactcggggc aaaagtcgtc gaagaagccg aagcaattca catcaccccg cccgaaacgc
     2041 tgacacccga cgccgtcatc gacacttacg acgaccaccg catggcgatg tgtttctcgc
     2101 tggtttcgct gttgggcgta cccgtcgtca tcaacgatcc gaaatgcacc cacaaaacct
     2161 tcccgactta ttttgaagtg ttctcatcgc tgaccgaaac agcggaataa ggcaacattt
     2221 tgccgcgatt ccggcgcggc gggcggctca ttctgtaaag aaagtatgtg cgccgaggta
     2281 gtttttggcg taaaacggtg tggagagttt ttcggttcgg atggttttgc cgctgctggg
     2341 ggcatggatg aattcgccgt tgccgatata gagtccgacg tgtgagtagc ggtgtgcgcc
     2401 gccggtgttg aagaatacga ggtcgccggc cttaaggcgg ctgtcgggga ttttgcggct
     2461 tgccgccgcc atgtcgcggg cggtgcgcgg cagcttgacg ttgagggcgt ttttgtaaac
     2521 gaattgaatc atgccgctgc aatcgaagcc ggttgcggtg ctgctgccgc cccatttgta
     2581 gggcgtgccg atgagtccga ggctgtggag catgagttcc tgcgagcctt gtgtgcggtc
     2641 gatgtggctg atgcggacgg cttggatttg ccggactgtc tgtttgggtt tcggttggcg
     2701 gtgtttgccg gaggtcgtgc cgcatgaggc gaggagcagt gcgctgagac agaggaaaag
     2761 ggttttgtcg gggggaaaca tggtttttcc tttgcgggtt cggatatccg tctgaaggtg
     2821 tttcaga
//
LOCUS       DAXHPV010000198         2790 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.198, whole genome shotgun sequence.
ACCESSION   DAXHPV010000198 DAXHPV010000000
VERSION     DAXHPV010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2790)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2790)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2790
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.198"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            30..1247
                     /locus_tag="ACFM6C_001938"
     CDS             30..1247
                     /locus_tag="ACFM6C_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFC6159332.1"
                     /translation="MTHTASKTPKFWLTITAAAFILLITIGMRMTLGLFVQPVVNTTE
                     LSIAQFSLIIAVFQLMWGISQPLSGALADRFGAFRVLSGGAVLLVCACLIAPNIPTYW
                     GLMIAVGLLLAFGTGSGGFSIIMGQVAAQVPAHKRGLASGLVNAGGSAGQFLFAPLVQ
                     GLVVLPEVGWTGTFYVWGAIALLILPVSWWLAGGNNAAHTQHAQATHGQSLGEAVKTA
                     FKTPSYILLHLSFFACGFHIAFLVTHLPTEVALCGLPATVASTSIAIIGLANIAGCIF
                     SGWCTSRVRGKYVLFGLYASRAAMILIYIFSPKTDLNFYIFAAALGFTWLATVTPTAS
                     ITGKLFGTRYLATLFGLTMLSHQIGGFLGSYIGGIVITQFGDYGWMWYADALLAGTAA
                     LLNLPIREPRTAA"
     gene            1244..1375
                     /locus_tag="ACFM6C_001939"
     CDS             1244..1375
                     /locus_tag="ACFM6C_001939"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159333.1"
                     /translation="MKECRLKTLRRHFPNTPPVSGLHDTQISLIKPQTTAAIKPPFK"
     gene            complement(1450..1590)
                     /locus_tag="ACFM6C_001940"
     CDS             complement(1450..1590)
                     /locus_tag="ACFM6C_001940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159334.1"
                     /translation="MNYRIGNAVCIDEMPDTGRGGQTFAKRTASDASPAQAGAASDGI
                     LS"
     gene            1603..2731
                     /locus_tag="ACFM6C_001941"
                     /pseudo
     CDS             1603..2731
                     /locus_tag="ACFM6C_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250655.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
BASE COUNT          659 a          834 c          664 g          633 t
ORIGIN      
        1 gcaaacttaa ccgactcaaa atacacatta tgacgcacac cgcatcgaaa acacccaaat
       61 tttggctgac catcaccgcc gccgcattca tcctgctgat taccatcggc atgaggatga
      121 cgctcggact gttcgtccaa cccgtcgtca acaccaccga attgagcatt gcccaattca
      181 gcctcatcat cgccgttttc caactgatgt ggggcatatc gcaaccattg tccggcgcgc
      241 ttgccgaccg tttcggcgcg ttcagggtat taagcggcgg cgcagtcctg ctcgtctgcg
      301 cctgcctgat tgcccccaac atcccgactt attgggggct gatgattgcc gtcgggctgc
      361 tgctcgcatt cggcacaggc tcaggcggtt tctccatcat tatggggcag gtcgccgccc
      421 aagtccccgc acacaaacgc ggcttggcat ccggactggt caacgccggc ggttcggcag
      481 gacaattcct gttcgcaccg ctggttcaag gactcgtcgt cctgcccgaa gtcggctgga
      541 cgggcacatt ttacgtttgg ggcgcaatcg ccctgctgat tctgcccgtc tcatggtggc
      601 ttgccggcgg caacaacgcc gcccacaccc aacacgccca agccacacac ggacaaagcc
      661 tcggagaagc agtcaaaacc gccttcaaaa ccccaagcta catcctgctg cacctaagct
      721 tttttgcctg cggcttccac atcgcctttc tcgtaaccca cctacccacg gaagtcgccc
      781 tgtgcggact gcccgccacc gtcgcctcga catccatcgc catcatcgga ctggcaaaca
      841 tcgccggctg cattttttcc ggctggtgca caagccgcgt tcggggcaaa tacgtcctgt
      901 tcggactgta cgcctcgcgc gccgcgatga tactcatcta cattttttcg cccaagaccg
      961 acctcaactt ctacattttc gccgccgcac tcggatttac ctggctcgcc accgtcacgc
     1021 cgaccgcctc cattaccggc aaactcttcg gcacacgcta cctcgccacc ctgttcggac
     1081 tgacgatgct cagccaccaa atcggcggat tcctcggctc gtacatcggc ggcatcgtga
     1141 ttacacaatt cggcgactac ggctggatgt ggtacgccga cgcactgctg gcgggaaccg
     1201 ccgccctcct caacctcccc atccgcgaac cccgaaccgc cgcatgaaag aatgccgtct
     1261 gaaaaccctc agacggcatt ttccaaacac cccgcccgtt tccggactgc acgacacgca
     1321 aatcagcctt atcaaaccgc aaacaaccgc cgcgattaaa ccgccattca aataagtccg
     1381 ttttcccttc gggtgtaaaa tcatcacaaa acgcgatact gtatatcgcc gggcgttatg
     1441 cagcggattt caggataaaa tgccgtctga agccgcccct gcctgggcgg gcgaagcgtc
     1501 ggatgcggtg cgcttggcaa aggtttgccc gccgcgcccc gtatccggca tttcatcaat
     1561 gcagaccgca tttccaatcc tataattcaa ggtgtccgcc ttatgaaaat cgtttttatc
     1621 acaacagtcg catccagcat ttacggtttc cgcgcccccg tcattaaaaa attaatcggc
     1681 aaaaaccatc aggtgtatgc ctttgtatcg gagttttccg ataatgaatt ggatattatc
     1741 agggaaatgg gggtaacacc cgttacctac cgttcaaacc gcagcgggct gaacccgttt
     1801 tccgatataa aatccacctt cctcatattt aaagaactca aaaaaatatc gccggatttg
     1861 gttttccctt atttcgcaaa acccgtgatt ttcggcactt ttgccgcaaa actggcaggc
     1921 gtgcccagaa tcgtcgggat gctggaaggt ttgggattcg catttacccc gcagccggaa
     1981 ggcataccgt taacaacaaa aatcataaag gggattttga ttgccttgta ccacattgcc
     2041 ctgccgatgt tggaaagcct gattgtatta aaccccgacg acaaagacga actgacggac
     2101 aaatacggca tcaaaataaa aaacatccat attttgggcg gaatcggtct ggattcgcgg
     2161 caatatcctt attccgaggc ggatattccc gatgaaaaag aacccgtaaa attcctcttt
     2221 atcggcagat ttctgaaaga aaaggggatt gatgatttta ttcgggcggc ggaacaggtt
     2281 aaggacaaat accccgatac ggtttttacc gctttgggcg caatcgacaa atcacgcggg
     2341 gggggggggc gatttggaac ggcttgccgc ccgcgatatt atccgtttcc ccggttttgt
     2401 gaacaatgtt tccgaagtga taaaggcgca tcatatattc gtattgccgt cttataggga
     2461 aggcgttccc cgaagcactc aggaggcaat ggccgtcggc agggcagtga ttacgacgga
     2521 tgtccccgga tgcagggaaa cggtcgccga caaggtcaac ggcttcctga tcgagccttg
     2581 gaatccccgc atcttagccg aaaaaatgat ttattttatc gaaaacaggg aagccgtccg
     2641 cctgatgggg aatgcaagtt atgcgattgc caaagataaa ttcgatgccg aaaaagtcga
     2701 tttgaaattg ctcgatattt tgaaggcgta aacaaggctg cccgcttttg agtttcggtc
     2761 atttctgata aacccccgtc attcccgcca
//
LOCUS       DAXHPV010000199         2713 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.199, whole genome shotgun sequence.
ACCESSION   DAXHPV010000199 DAXHPV010000000
VERSION     DAXHPV010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2713
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.199"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(87..1457)
                     /gene="ffh"
                     /locus_tag="ACFM6C_001942"
     CDS             complement(87..1457)
                     /gene="ffh"
                     /locus_tag="ACFM6C_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048501 - signal recognition particle,
                     plasma membrane targeting [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005048 - signal sequence binding
                     [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HFC6159335.1"
                     /translation="MLDNLTGRFSNVFKNIRRQAKLTEDNIKEALREVRLALLEADVA
                     LPVVKEFVNNVKEKALGQEVVGSLTPDQAFIGVVNKALTELMGRENKTLDLSVAPPAV
                     VLMAGLQGAGKTTTAGKLARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFF
                     PSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVNPVETL
                     FVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVG
                     EKINGLEPFHPDRLASRILGMGDVLTLIEDVQKGIDEEAAAKMAKKLQKGKGFDLNDF
                     KEQIQQMRNMGGLENLMSKMPGELGQISKQIPEGTAEKAMGKVEAIINSMTPKERANP
                     ALLKASRKRRIAMGAGTTVQEVNKLLKQFEQMQQMMKMFSGNGLGKLMRMAKGMKGMK
                     GMFPGL"
     gene            1677..2483
                     /locus_tag="ACFM6C_001943"
     CDS             1677..2483
                     /locus_tag="ACFM6C_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YpjD"
                     /protein_id="HFC6159336.1"
                     /translation="MPTVFIFLTAVYAGLGAFAWHCQQQGRGRDYPWKTELPVLGAAL
                     TVHGAALLMPVIQDKIIIMGFGYSGSLIVWMMLFIYFAGSFFYPLRGVQLLLYPCAAL
                     MLLSGLVFPGKFSGYEITDLPFMLHIGTSLLAYGLFGIATLLSVLTLLLNRSLHRRSF
                     SKLAGFLPSLLSLEKLMFQAMWAGFILLTYSVVSGTFFAEAVFGKPMTFTHKTVFGIL
                     SWLIYGGLLLKHSMTAWRGKKAAVWTIIGFVSLMIAYMGSKFVLEIILKR"
BASE COUNT          588 a          702 c          688 g          735 t
ORIGIN      
        1 cctgattttt gttaatccac tataaatcag aatataaaac aaaaacgccg tctgaaattt
       61 tagacggcgt tttcggtcaa atcggcttac aaacccggga acattccttt cattcccttc
      121 attcctttcg ccatacgcat cagtttgccc aagccgttgc cgctgaacat cttcatcatt
      181 tgttgcattt gttcaaactg tttgagcaat ttgttcactt cctgtacggt cgtgcccgca
      241 cccattgcaa tacggcgttt gcggctggct ttgagcaggg cagggttggc gcgttctttt
      301 ggagtcatcg agttgatgat ggcttccact ttgcccatcg ctttttcagc cgttccttcg
      361 gggatttgtt tcgatatttg acccagttcg cccggcattt tcgacatcag gttttccaaa
      421 ccgcccatat tgcgcatttg ctggatttgt tctttaaagt cgttgaggtc gaagcctttg
      481 cctttttgta gctttttcgc cattttggcg gcggcttctt catcaatacc tttttggacg
      541 tcttcaatca gggtcaatac gtcgcccatg ccgaggatac ggctggcaag acggtcgggg
      601 tggaaaggtt cgaggccgtt gattttttcg ccgacaccga taaatttaat cggcttgccg
      661 gttacgtggc gcacggacaa agctgcgccg ccgcgcgaat cgccgtccat cttggtcaat
      721 acgacaccgg tcagcggcag ggcttcatta aatgcctgag cagtgttcac cgcatcctga
      781 cccagcatcg catcgatgac gaacaaagtt tccaccgggt taaccgccgc gtgaagggct
      841 ttgatttcgt tcatcatctc ctcatcgatt gccaaacggc cggcggtatc gaccatcaat
      901 acatcgtaaa aatgtttttt ggcgtaatcg acggcggcag ttgcaatctc aaccggtttt
      961 tggttggtat cggatgggaa aaagtccacg ccgacctgtt cggccaacag acgcagttgt
     1021 tcaatcgcgg cagggcggta aacgtcggca gatacgacca aaaccttttt cttctgatcg
     1081 tttttcagca ggcgggcgag tttgccggcg gtcgtcgtct tgcccgcgcc ctgcaaacct
     1141 gccatcaaca cgacggcggg cggcgcaacc gacaaatcca gcgttttgtt ttccctgccc
     1201 atcagctcgg tcagggcttt gttgaccacg ccgataaatg cctgatccgg cgtcaggctg
     1261 cccaccactt cctgaccgag ggccttttct ttgacgttgt tgacgaactc tttgacgaca
     1321 ggcagggcga catccgcctc aagcagggcg aggcggactt cgcgcaaggc ttctttaata
     1381 ttgtcttcgg tcagtttggc ctgcctccgg atgtttttga agacattgct gaagcggccg
     1441 gttaaattgt ctaacatact ggtccttggt ctgaataaga atagcttgcc ccatcagggg
     1501 cattctttgt taaaataaaa tcaaaataat ttgatgcggc ttgtgtgccg gacagcatat
     1561 cggcaaatcc gtcaaggctt gcccgaaatg gggattttac aattccaacg ttaaaagttc
     1621 caatatttca taagcggccg cagacggcgc aacagtatag atagagaaag tccaccatgc
     1681 cgacagtttt catctttttg acggcggttt acgcaggatt gggtgcattt gcatggcact
     1741 gccaacagca ggggcgcggt cgggattacc cgtggaagac ggaattgccg gttttgggcg
     1801 cggcattgac cgtccacggc gcggcactgc tgatgccggt cattcaagac aaaatcatca
     1861 ttatgggctt cgggtattcc ggcagcctga ttgtttggat gatgctgttt atttattttg
     1921 ccggcagctt cttttatccg ctgcgcggag tgcagttgct gctgtatccc tgcgccgcac
     1981 tgatgctgct gtcaggtttg gtttttcccg gaaaattctc gggatatgaa attaccgacc
     2041 ttccctttat gctgcatatc ggcacatcac tgcttgcata cgggctgttc ggcatcgcaa
     2101 cattattgtc cgttttgacc ctgctgctga atcggagcct gcaccgcagg agcttctcca
     2161 agctcgcagg attcctgccg tcgctgctca gtttggaaaa actcatgttc caggccatgt
     2221 gggcaggttt catcctgctg acctattccg tcgtcagcgg cacattcttc gccgaagccg
     2281 tattcggcaa acccatgacc tttacccata aaaccgtatt cggcatattg tcatggctga
     2341 tttacggcgg actgctgctc aagcacagca tgaccgcatg gcgcggcaaa aaagccgccg
     2401 tgtggaccat catcggattt gtcagcctta tgattgccta tatgggcagc aagttcgtat
     2461 tggaaatcat tctgaaaaga taagaagagc caacagatgc cgtctgagtc cccgagtttc
     2521 agacggcata ttcacaaagg cgcaccggtc agaggagggg gaggaaggga ttgttggagg
     2581 tggtgcagca tttagcagaa ataaaaaacc ttatccgaca gcgacatgac gaatttcccc
     2641 aaaaaaatcc cactgaaagc attgaccgtt tttccctgtg ggcgtatagt tcggttcttc
     2701 gctgctgcag aag
//
LOCUS       DAXHPV010000200         2709 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.200, whole genome shotgun sequence.
ACCESSION   DAXHPV010000200 DAXHPV010000000
VERSION     DAXHPV010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2709)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2709)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2709
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.200"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..539
                     /locus_tag="ACFM6C_001944"
     CDS             <1..539
                     /locus_tag="ACFM6C_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RTX iron-regulated FrpC family protein"
                     /protein_id="HFC6159337.1"
                     /translation="GQDAYSINLIEISVYYKKTDQGWVLEPYNQQNKAHFIQFLRDGL
                     DSVDDIVIRKDACSLSTTMGERLLTYGVKKMPSAYPEYEAYEDKRHIPENPYFHEFYY
                     IKKGENPAIITHWNNRVNQAEEDNYSTSVGSCINGFTVQYYPFIREKQQLTQQELVGY
                     HQQVEQLVQSFVNNSSKK"
     gene            556..830
                     /locus_tag="ACFM6C_001945"
                     /pseudo
     CDS             556..830
                     /locus_tag="ACFM6C_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212437.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(917..2050)
                     /locus_tag="ACFM6C_001946"
     CDS             complement(917..2050)
                     /locus_tag="ACFM6C_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159338.1"
                     /translation="MFKKFKPVLLSFFALVFAFWLGKGIAYEINPRWFLSDTATEIPE
                     NPNAFVAKLARLFRNADRAVVIVKESMRTEESLAETVDDGPLQSEKDYLALAIRLSRL
                     KEKAKWFHVTEQEHGKEVWLDYYIGEGGLVAVSLSQRSPEAFVNAEYLYRNDRPFSVN
                     VYGGTAHGENYETTGEYRVVWQPDGSVFDASGRGKIGEDVYEHCLGCYQMAQVYLAKY
                     RDVANDEQKVWDFREESNRIASDSRDYVFYQNMRELMPRGMKANSLVVGYDADGLPQK
                     IYWSFDNGKKRQSFEYYLKNGNLFIAQSSTVALKADGVTADMQIYHAQQTWYLDGGRI
                     IREEKQGDRLPDFPLNLEDLEKEVRRYAEAAARRSGGRRDLSY"
     gene            complement(2170..2664)
                     /locus_tag="ACFM6C_001947"
     CDS             complement(2170..2664)
                     /locus_tag="ACFM6C_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159339.1"
                     /translation="MENRFEKIVKDIFSFTQFVSEVENKIPNQSSRYYDCWWELEILN
                     ASALEDWEISGKPEKWEKWTEKYQTEALQLVKNLFAEEVPENNIVCDISHFLHFADWA
                     EADIPNQSRLYAEYWWEMETFKISVLEDWERLGRPLDWKKWKDQYQSEAFELVKKLNR
                     SKQE"
BASE COUNT          763 a          640 c          518 g          788 t
ORIGIN      
        1 ccgggcagga tgcttactcc attaatttga tagagattag cgtctattac aaaaaaaccg
       61 accaaggctg ggttcttgag ccatacaacc agcaaaacaa agcacacttt atccaatttc
      121 tacgcgacgg tttggatagc gtggacgata ttgttatccg aaaagatgcg tgtagtttaa
      181 gtacgactat gggagaaaga ttgcttactt acggggttaa aaaaatgcca tctgcctatc
      241 ctgaatatga agcttatgaa gataaaagac atattcctga aaatccatat tttcatgaat
      301 tttactatat taaaaaagga gaaaatccgg cgattattac tcattggaat aatcgagtaa
      361 accaggctga agaagataat tatagcacta gcgtaggttc ctgtattaac ggtttcacgg
      421 tacagtatta cccgtttatt cgggaaaagc agcagctcac acagcaggag ttggtaggtt
      481 atcaccaaca agtagagcaa ttggtacaga gttttgtaaa caattcaagt aaaaaataat
      541 ttaaaggatc ttattatgaa tgagggtgaa gttgttttaa caccagaaca aatccaaacc
      601 ttgcgtggtt atgcttcccg tggcgatacc tatggcggtt ggcgttattt ggctaatttg
      661 ggtgaccgtt atgcggataa tgctgctgca attgtcggta aggatgcaaa cttaaatggt
      721 ttgaatttat ggatgaaaaa agggtggaaa acctatggga tgatacggtc ggtaaaaaga
      781 tccgtttaat gtgtatttcc gttttttgga ttgtggtttt caatttatag cgaatcggat
      841 tcggcatata cggcattgca aaaagcgtct gactctccaa tgccgtctga aaaccggttt
      901 cagacggcat ttgcgttcag taagaaaggt cgcgcctgcc gcccgaacgt ctcgccgcag
      961 cctctgcata acggcgcacc tctttttcca agtcttccaa gttcaaagga aaatcaggca
     1021 gtctgtctcc ctgtttctct tcgcggataa tccgcccacc atccaaatac cacgtctgtt
     1081 gcgcatgata gatctgcata tccgccgtta cgccatccgc tttcaatgct accgtcgaag
     1141 attgtgcaat aaaaagattt ccgtttttca aataatattc gaaactctgg cgttttttcc
     1201 cattgtcgaa actccaatag attttctgcg gcagaccgtc cgcatcatag ccgaccacaa
     1261 gactgttcgc cttcatcccc cggggcatca attcccgcat attctgataa aacacataat
     1321 cgcgcgagtc cgacgcaatc cggttgctct cttcgcggaa gtcccaaacc ttctgctcat
     1381 cattcgcgac atcccggtat ttcgccaaat atacctgggc catctgataa cacccgaggc
     1441 aatgctcata aacatcttcc ccgattttcc cgcgccccga cgcatcaaat accgaaccgt
     1501 ccggttgcca aacaacccga tattctcctg tcgtttcata attttctccg tgagccgttc
     1561 cgccgtacac atttacagaa aacggacgat cgtttcgata cagatattcg gcattaacaa
     1621 acgcttccgg cgagcgttgc gaaagcgaaa ccgcaaccaa accaccctcg ccgatatagt
     1681 aatccagcca aacctctttc ccatgttcct gctccgttac gtgaaaccat ttcgcctttt
     1741 ctttcaaacg actgagccgg atagcgagcg cgagataatc cttctccgac tgcaacggac
     1801 cgtcatccac agtttcggca agactttcct ccgtcctcat cgattccttc acgatgacga
     1861 ccgccctgtc ggcatttcgg aacaggcggg caagtttcgc cacaaaagca ttcggatttt
     1921 caggtatttc agttgccgta tcgctcaaaa accaacgcgg attaatctca taggcaatac
     1981 ccttccccag ccaaaaggca aatacaagtg caaaaaatga caacaatacc ggtttgaatt
     2041 ttttaaacat atttattttc cgtttaacag gatatatcga ttatatcaga cgagctttaa
     2101 ttgtttgatt tttaatctaa tctacggttg ctaccgtact ttaaaaaccc ctatgcaggc
     2161 tgcggcttgt tactcttgtt tgcttcggtt caattttttg actaattcaa atgcttcaga
     2221 ttgatattga tctttccatt ttttccaatc taacggcctt cccaagcgtt cccaatcttc
     2281 taaaaccgat attttgaacg tttccatttc ccaccaatat tcggcatata aacgtgattg
     2341 attgggaatg tcggcttctg cccaatcggc aaaatgcaaa aaatgagaaa tatcgcaaac
     2401 tatattattt tcaggaactt cttcggcaaa tagattcttg accaactgta acgcttcggt
     2461 ctgatatttt tctgtccatt tctcccattt ttcaggcttt cccgatattt cccaatcttc
     2521 caatgcggag gcatttaaga tttccaattc ccaccagcag tcgtaataac gggaggattg
     2581 gttgggaatt ttattttcta cttcggaaac aaattgggta aaactaaaaa tatccttaac
     2641 gattttttca aatctatttt ccataaattg ctgcctcttc caaattatag tggattaaat
     2701 ttaaatcag
//
LOCUS       DAXHPV010000201         2660 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.201, whole genome shotgun sequence.
ACCESSION   DAXHPV010000201 DAXHPV010000000
VERSION     DAXHPV010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2660
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.201"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..538
                     /locus_tag="ACFM6C_001948"
     CDS             <1..538
                     /locus_tag="ACFM6C_001948"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6159340.1"
                     /translation="FRSKTVRLFYLGTLSYSYDVETVCKGVRKLLDDGENVELHIMGG
                     GPDLEKLKQYENRAIKFYGYLPYSEMMSIAKACDIAVNAIHSHAMQSVTNKLSDYMAL
                     QKPILNSQNNAEVLDLMNLLPHENYRSGDVDGFVQAAKDILKRKNDPVQSEEIVRRFK
                     RDISYQKIVNLIERLANE"
     gene            531..1058
                     /locus_tag="ACFM6C_001949"
                     /pseudo
     CDS             531..1058
                     /locus_tag="ACFM6C_001949"
                     /inference="COORDINATES: protein motif:HMM:NF014453.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
     gene            1107..2108
                     /locus_tag="ACFM6C_001950"
     CDS             1107..2108
                     /locus_tag="ACFM6C_001950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HFC6159341.1"
                     /translation="MPYFTGNQTNEKNNILILSAGRRVELVQDFQTEAARFSDGISVF
                     ATDLNPRMSSACHVSDGSFEVPPISADSYIDSIFNLAVRENIGLIIPTIDTELQKLAD
                     ERERFEAASVHIVVSDSDFIAQCRDKRKTATLFARYGIRSPEIYDRKKLVFPCFAKPY
                     DGSRAIGAKRIDTPADLTPEVLADTKLMFCQFIDIENKFSEFTVDMYYDRQCRLKCAI
                     PRKRLEVRSGEISKGVTCKNSLYQTLLEKMSVLQGARGCITVQFFYNEETGEFYGVEI
                     NPRFGGGFPLTYAAGGNYPSRLMREYLGDEEIPFSDDWENNLIMLRYDAKVLVHEND"
     gene            2095..2660
                     /locus_tag="ACFM6C_001951"
                     /pseudo
     CDS             2095..2660
                     /locus_tag="ACFM6C_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219797.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
BASE COUNT          680 a          740 c          624 g          616 t
ORIGIN      
        1 attccgctcc aaaaccgtcc gccttttcta cttgggcacg ctcagttaca gctatgacgt
       61 ggaaaccgtg tgcaaaggcg ttcggaaact tttagacgac ggcgaaaacg tcgaattgca
      121 cattatgggc ggaggacccg atttggagaa actcaaacaa tatgaaaatc gcgccatcaa
      181 gttttacggt tatttaccct attctgaaat gatgtcgatt gccaaagcgt gcgacattgc
      241 cgtcaacgcc atccatagcc acgccatgca gtcggttacc aacaaactct ccgactatat
      301 ggctttgcaa aaaccgattc tgaacagtca gaacaatgcc gaagtcctcg acctcatgaa
      361 tctgctgccg cacgaaaact accgttccgg cgatgtggac ggtttcgttc aagccgccaa
      421 agatattttg aagcgcaaaa acgatcctgt tcagtccgaa gaaatcgtcc gccgcttcaa
      481 gcgcgacatt tcctatcaaa aaatcgtcaa cctgattgaa agattggcaa atgagtaaag
      541 ccgtcaaacg cctgttcgac atcatcgcat ccgcatcggg actgattgtc ctctcacccg
      601 ttttcctgat tttggcgtac ctcatccgca agaatctggg ttcgcccgtc ttcttcattc
      661 aggaacgccc tggaaaggac ggaaaacctt ttaaaatggt caaattccgt tccatgcgcg
      721 acgcgcttga ttcagacggc attccgctgc ccgacggaga acgcctgaca ccgtttggca
      781 aaaaactgcg tgccgccagc ttggacgaac tgcccgaatt atggaatgtc ttaaaaggcg
      841 agatgagcct ggtcggcccg cgcccgcttt tgacgggcta cctgccgctt tataacgact
      901 tccaaaaccg ccgccacgaa atgaaaccgg gcattaccgg ctgggcgcag gtcaacgggc
      961 gcaacgcgct ttcgtgggac gaaaagttcg cctgcgatgt ttggtatatc gaccattaca
     1021 gtttttggct ggatatgaaa atcctgtttt tgacaatcag aaaagtcttg attaaagaag
     1081 gcatttcggc ggaaggggaa gccactatgc cttatttcac tggaaatcaa actaatgaaa
     1141 aaaataatat actgattctg tcggcaggtc gccgtgtcga attggtgcag gacttccaaa
     1201 ccgaagccgc acgtttttca gacggcatca gcgtttttgc cactgacctc aacccccgca
     1261 tgtcttctgc ctgccatgtt tcggacggtt catttgaagt gccgccgatt agtgccgatt
     1321 catatatcga cagcattttc aatctggcgg tacgcgaaaa tatcggttta atcatcccaa
     1381 ccatagacac cgaactgcaa aagctggcag acgagcgcga acgctttgaa gcggcaagtg
     1441 tccacatcgt cgtttccgat tcggacttca tcgcacaatg ccgcgacaaa cggaaaaccg
     1501 ccaccttgtt tgcccgctac ggcatacgct cacccgaaat ttacgaccgc aagaagttgg
     1561 ttttcccttg cttcgccaag ccttatgacg gcagccgcgc catcggtgca aaacggattg
     1621 acacacctgc cgacctgaca ccggaagtct tggcagacac caaattaatg ttctgtcagt
     1681 ttatcgacat cgaaaataaa ttttccgagt ttaccgtcga tatgtattac gaccgtcaat
     1741 gccgtctgaa atgcgccatc ccgcgaaaac gcttggaagt gcgctccggc gaaatcagca
     1801 aaggcgttac ctgcaaaaac agcctctacc aaacgctgct ggaaaaaatg tcggtattgc
     1861 agggcgcgcg cggctgtatc acggtgcagt tcttctacaa cgaagaaacc ggcgaattct
     1921 acggcgtgga aatcaacccc cgcttcggcg gtggcttccc gctgacgtat gccgcaggcg
     1981 gcaattatcc gagccggttg atgcgcgaat acctcggcga cgaagaaatc ccgttttcag
     2041 acgactggga aaacaacctc attatgttgc gctacgatgc caaggtcttg gttcatgaaa
     2101 acgattaatc ctgaaaccac cgtcatcgtc ttcgacttgg acgataccct gtattcggaa
     2161 tacgaataca agctctccgg tatccgttcg gtcatcgata ccgttgccgc actgtatccc
     2221 gattggaatt cagacaacct atggcgcaac atcgaccccg acggcaaaga ttggctggac
     2281 aaattgtgcc gccactgtgg ttttaatgaa tcggaaaaac aggttctttc tgtggcaata
     2341 ccggctgcac cgcccgacgc tgactccgta tgctccgccg gatttcctgt ccgaactgac
     2401 cgcgcccttc gccgcacgcg cgctgattac cgacggcaga agcctgaccc aacgcctgaa
     2461 gctggaagcc ttgggtctgt cttccctgtt tgacgacatc ctcatctctg aagcctgctc
     2521 ttcggaaaag cccgacggca aacgcttccg ccatcttcaa gacaaatatg ccgacaaggc
     2581 aggctgcttc atctatatcg gcgacaacat ttccaaagac tttatcgcgc tgaacacttt
     2641 gggctggata accataggat
//
LOCUS       DAXHPV010000202         2636 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.202, whole genome shotgun sequence.
ACCESSION   DAXHPV010000202 DAXHPV010000000
VERSION     DAXHPV010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2636)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2636)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2636
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.202"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            91..654
                     /gene="gmhB"
                     /locus_tag="ACFM6C_001952"
     CDS             91..654
                     /gene="gmhB"
                     /locus_tag="ACFM6C_001952"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HFC6159342.1"
                     /translation="MKLIILDRDGVINQDRDDFVKSVDEWIPVEGSMDAVAFLTQAGY
                     TVAVATNQSGIGRKYFTVQNLTEMHAKMHRLVRQAGGEINGIWFCPHTGADGCGCRKP
                     KPGMIEDILERFNAQASETWLVGDSLRDLQAIDAVGGKPALVLTGKGKKTLSQHGHEL
                     PEHTQVFDTLLDFSQYIMQENAAPQAD"
     gene            684..1427
                     /locus_tag="ACFM6C_001953"
     CDS             684..1427
                     /locus_tag="ACFM6C_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HFC6159343.1"
                     /translation="MLIIRNLIYWLILCSTLIFLFPFMLLASPFRDGAHKMARVWVKI
                     LNLSLKHIVGLKYRIIGAENIPDRPAVICAKHQSGWETLALQDIFPPQVYVAKRELFK
                     IPFFGWGLKLVKTIGIDRNNRREANEQLIKQGLARKNEGYWITIFPEGTRLAPGKRGK
                     YKLGGARMAKMFEMDIVPVALNSGEFWPKNSFLKYPGEITVVICPTIPHASGSEAELM
                     EKCEHLIETQQPLISGAGPFAAKMPSETA"
     gene            1424..2116
                     /locus_tag="ACFM6C_001954"
     CDS             1424..2116
                     /locus_tag="ACFM6C_001954"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HFC6159344.1"
                     /translation="MTAFVHTLSDGMELTVEIKRRAKKNLIIRPAGTHTVRISVPPCF
                     SVSALNRWLYENEAVLRQTLAKTPPPQTAENRLPESILFHGRQLALTAHQDTQILLMP
                     SEIRVPEGAPEKQLALLRDFLERQAHSYLIPRLERHARTTQLFPASSSLTSAKTFWGV
                     CHKTTGIRFNWRLVGAPEYVADYVCIHELCHLAHPDHSPAFWELTRRFAPYTPKAKQW
                     LKIHGRELFALG"
BASE COUNT          629 a          883 c          634 g          490 t
ORIGIN      
        1 taatccacta tatcacgcgg cacaggcgca tcactgccga tatttcagta taatgccacc
       61 cccgacctgc cccaatccaa aggaaacgcg atgaaactca tcattctcga ccgcgacggc
      121 gtcatcaatc aggaccgcga cgacttcgtc aaatccgttg acgagtggat acctgtcgaa
      181 ggcagcatgg atgcggtggc atttctgacg caggcaggct acaccgtcgc cgttgccacc
      241 aaccaatccg gcatcgggcg caaatatttt accgttcaaa acctcaccga aatgcatgcc
      301 aaaatgcacc gcctcgtccg tcaggcaggc ggcgaaatca acggcatctg gttctgccct
      361 cataccggcg ccgacggctg cggctgccgc aagcccaaac cgggtatgat tgaagacatc
      421 ctcgaacgct tcaacgccca agcttcggaa acttggctgg tcggcgacag cctgcgcgat
      481 ttgcaggcaa tcgatgccgt cggcggcaaa cccgcgctgg ttctgaccgg aaaaggcaaa
      541 aaaacgctct cccaacacgg acacgaattg cccgaacaca cacaggtttt cgataccttg
      601 ctcgatttct cacaatacat catgcaggaa aacgccgcac cgcaagccga ctgaacatac
      661 cgcatttccg acaaggcaaa accatgctca tcatccgcaa cctgatttac tggctgatac
      721 tctgttccac cctgattttc ctctttccct ttatgctgct cgcctcgcct ttccgagacg
      781 gggcgcacaa gatggcgcgg gtctgggtca aaatcctcaa cctctcgctc aaacacatcg
      841 tcgggctcaa ataccgcatc atcggcgcgg aaaacatccc cgaccgcccc gccgtcatct
      901 gcgccaaaca ccaaagcggc tgggaaacgc tcgcccttca ggacattttt ccgccgcagg
      961 tttacgttgc caaacgcgag ttgttcaaaa tccccttttt cggctggggc ttgaaactgg
     1021 tcaaaaccat aggcatagac cgcaacaacc gccgcgaagc caacgagcag ctcataaaac
     1081 aggggttggc gcgcaaaaac gaaggctatt ggattaccat tttccccgaa ggcacgcgcc
     1141 ttgcacccgg aaagcgcggc aaatacaaac tcggcggcgc gcgcatggcg aaaatgtttg
     1201 agatggacat cgtccccgtc gccctcaaca gcggcgaatt ttggccgaaa aactcctttc
     1261 tgaaatatcc gggggaaatc accgtcgtca tctgtccgac catcccgcac gcaagcggca
     1321 gcgaagccga attgatggaa aaatgcgaac acctcatcga aacgcagcag ccgctcattt
     1381 ccggcgcagg cccgtttgcc gccaaaatgc cgtctgaaac cgcatgaccg cctttgtcca
     1441 caccctttca gacggcatgg aactgaccgt cgaaatcaag cgccgtgcca agaaaaacct
     1501 gattatccgc cccgccggca cacataccgt ccgcatcagc gtcccaccct gcttctccgt
     1561 ctccgctcta aaccgctggc tgtatgaaaa cgaagccgtc ctgcggcaaa cactggcgaa
     1621 aacaccgccg ccgcaaactg ccgaaaaccg gctgcccgaa tccatcctct tccacggcag
     1681 acagcttgcc cttaccgccc atcaagacac gcaaatcctg ctgatgccgt ctgaaatccg
     1741 tgttcccgaa ggcgcacccg aaaaacagct tgcgctgctg cgggactttt tggaacggca
     1801 ggcgcacagt tacctgattc cccgcctcga acgccacgcc cgcaccacac aactgttccc
     1861 cgcctcctcc tcgctaacct ctgccaaaac cttctggggc gtgtgccaca aaaccacagg
     1921 catacgcttc aactggcggc tggtcggcgc accggaatac gttgccgact atgtctgcat
     1981 acacgaactc tgccacctcg cccatccaga ccacagcccc gccttttggg aactgacccg
     2041 ccgcttcgcc ccctacacgc ccaaagcgaa acagtggctc aaaatccacg gcagggaact
     2101 tttcgcctta ggctgacgcg gcccgggcag gcatccgcca attcagacct cctcccaaac
     2161 ggacatccgg aaagcagcat cacagccggc gacacatacc gctgcctccg ctttcagacg
     2221 gcatccgtgc cggaacaggc acgcgcccgc ccgattcaaa ccgcgatgac gctttgccgc
     2281 cggttcgggg caggatggcg gcacacgcgc cgtctgccgc gtttcatttc acaccgctct
     2341 tccgaaaccc gaaacccgcc cggtccgacg tgcggtatga aacgcttaag ctgacgcgaa
     2401 gtcttttact gatttgcccg cgaaaatgcc gtctgaaagg ttttcggacg gcattttttt
     2461 gcgtttccca ggatggcggc ggattcgtaa aaggcggtca gggtggattg taggatgggt
     2521 tgagacctgc cgaatccgcc gcatctgcca aatctaccgc cgtcattcct acgaaagtgg
     2581 gaatctagaa cgcggggtta agaaaacctg catcccgtca ttcccacgaa agtggg
//
LOCUS       DAXHPV010000203         2611 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.203, whole genome shotgun sequence.
ACCESSION   DAXHPV010000203 DAXHPV010000000
VERSION     DAXHPV010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2611)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2611)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.203"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            33..2183
                     /gene="yccS"
                     /locus_tag="ACFM6C_001955"
     CDS             33..2183
                     /gene="yccS"
                     /locus_tag="ACFM6C_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YccS family putative transporter"
                     /protein_id="HFC6159345.1"
                     /translation="MKTPPLKPLLITSLPVFASVFTAASIVWQLGEPKLAMPFVLGII
                     AGGLVDLDNRLTGRLKNIIATVALFTLSSLVAQSTLGTGLPFILAMTLMTFGFTILGA
                     VGLKYRTFAFGALAVATYTTLTYTPETYWLTNPFMILCGTVLYSTAIILFQIILPHRP
                     VQESVANAYDALGGYLEAKADFFDPDEAAWIGNRHIDLAMSNTGVITAFNQCRSALFY
                     RLRGKHRHPRTAKMLRYYFAAQDIHERISSAHVDYQEMSEKFKNTDIIFRIHRLLEMQ
                     GQACRNTAQALRASKDYVYSKRLGRAIEGCRQSLRLLSDGNDSPDIRHLRRLLDNLGS
                     VDQQFRQLQHNGLQAENDRMGDTRIAALETGSLKNTWQAIRPQLNLESGVFRHAVRLS
                     LVVAAACTIVETLNLNLGYWILLTALFVCQPNYTATKSRVRQRIAGTVLGVIVGSLVP
                     YFTPSVETKLWIVIASTTLFFMTRTYKYSFSTFFITIQALTSLSLAGLDVYAAMPVRI
                     IDTIIGASLAWAAVSYLWPDWKYLTLERTAALAVCSNGAYLEKITERLKSGETGDDVE
                     YRATRRRAHEHTAALSSTLSDMSSEPAKFADSLQPGFTLLKTGYALTGYISALGAYRS
                     EMHEECSPDFTAQFHLAAEHTAHIFQHLPETEPDDFQTALDTLRGELDTLRTHSSGTQ
                     SHILLQQLQLIARQLEPYYRAYRQIPHRQPQNAA"
BASE COUNT          629 a          980 c          523 g          479 t
ORIGIN      
        1 tattcacttc ataacaataa accggtaaaa ccatgaaaac cccacccctc aagcctctgc
       61 tcattacctc gcttcccgtt ttcgccagtg tttttaccgc cgcctccatc gtctggcagc
      121 taggcgaacc caagctcgcc atgcccttcg tactcggcat catcgccggc gggctggtcg
      181 atttggacaa ccgcctgacc ggacggctga aaaacatcat cgccaccgtc gccctattca
      241 ccctctcctc acttgttgca caaagcacgc tcggcacagg cctgcccttc atcctcgcca
      301 tgaccctgat gacctttggc ttcaccattt taggcgcggt cgggctgaaa taccgcacct
      361 tcgccttcgg cgcactcgcc gtcgccacct acaccacact tacctacacc cccgaaacct
      421 actggctgac caaccccttc atgattttat gcggcaccgt actgtacagc accgccatca
      481 tcctgttcca aatcatcctg ccccaccgcc ccgtccaaga aagcgtcgcc aacgcctacg
      541 acgcactcgg cggctacctc gaagccaaag ccgacttctt cgaccccgat gaggcagcct
      601 ggataggcaa ccgccacatc gacctcgcca tgagcaacac cggcgtcatc accgccttca
      661 accaatgccg ttccgccctg ttttaccgtt tgcgcggcaa acaccgccac ccgcgcaccg
      721 ccaaaatgct gcgctactac ttcgccgccc aagacatcca cgaacgcatc agctccgccc
      781 acgtcgacta ccaagagatg tccgaaaaat tcaaaaacac cgacatcatc ttccgcatcc
      841 accgcctgct cgaaatgcag ggacaagcct gccgcaatac cgcccaagcc ctgcgcgcaa
      901 gcaaagacta cgtttacagc aaacgcctcg gccgcgccat cgaaggctgc cgccaatcgc
      961 tgcgtctcct ttccgacggc aacgacagcc ccgacatccg ccacctgcgc cgtcttctcg
     1021 acaacctcgg cagcgtcgac caacaattcc gccaactcca gcacaacggc ctgcaggcag
     1081 aaaacgaccg catgggcgac acccgcatcg ccgccctcga aaccggcagc ctcaaaaaca
     1141 cctggcaggc aatccgtccg cagctaaacc tcgaatcagg cgtattccgc catgccgtcc
     1201 gcctgtccct tgtcgttgcc gccgcctgca ccatcgtcga aaccctcaac ctcaacctcg
     1261 gctactggat actgctgacc gcccttttcg tctgccagcc taactacacc gccaccaaaa
     1321 gccgcgtccg ccagcgcatt gccggtaccg tactcggcgt aatcgtcggc tcgctcgtcc
     1381 cctacttcac cccgtctgtc gaaaccaaac tctggattgt catcgccagt accaccctct
     1441 ttttcatgac ccgcacctac aaatacagtt tctccacctt cttcattacc attcaagccc
     1501 tgaccagcct ctccctcgca ggtttggacg tatacgccgc catgcccgta cgcatcatcg
     1561 acaccattat cggcgcatcc cttgcctggg cggcagtcag ctacctatgg ccagactgga
     1621 aatacctcac gctcgaacgc accgccgccc ttgccgtatg cagcaacggt gcctatctcg
     1681 aaaaaatcac cgaacgcctc aaaagcggcg aaaccggcga cgacgtcgaa taccgcgcca
     1741 cccgccgccg cgcccacgaa cacaccgccg ccctcagcag caccctttcc gacatgagca
     1801 gcgaacccgc aaaattcgcc gacagcctgc aacccggctt taccctgctc aaaaccggct
     1861 acgccctgac cggctacatc tccgccctcg gcgcataccg cagcgaaatg cacgaagaat
     1921 gcagccccga ctttaccgca cagttccacc tcgccgccga acacaccgcc cacatcttcc
     1981 aacacctgcc cgaaaccgaa cccgacgact ttcagacagc actggataca ctgcgcggcg
     2041 aactcgacac cctccgcacc cacagcagcg gaacacaaag ccacatcctc ctccaacagc
     2101 tccaactcat cgcccgacag ctcgaaccct actaccgcgc ctaccgccaa attccgcaca
     2161 ggcagcccca aaatgcagcc tgaaaaagtt tcggcatttt gtaagagagg acagattgtc
     2221 agacaggttg caagatagtg gataaggctt tgcgcagggt aaatgcgtag caactgaacc
     2281 gtcattccca cgaacctaca tcccgtcatt cccacgaaaa cagaaaacca aaaacagaaa
     2341 cctaaaatcc cgtcattccc acgaaagtgg gaatccagaa tctcggactt tcagataatc
     2401 tttgaatatt actgttgttc taaggtctag attcccgcct gcgcggaaat gacgaatcca
     2461 ttcgcacgga aacctacatt ccgtcattcc cacgaaagtg ggaatccaga atcccggact
     2521 ttcagataat ctttgaatat tgctgttatc ccaaggtctg gattcccgcc tgtgcgggaa
     2581 tgacgaatcc atccgtacgg aaacctgcac c
//
LOCUS       DAXHPV010000204         2580 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.204, whole genome shotgun sequence.
ACCESSION   DAXHPV010000204 DAXHPV010000000
VERSION     DAXHPV010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2580)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2580)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2580
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.204"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(196..267)
                     /locus_tag="ACFM6C_001956"
     tRNA            complement(196..267)
                     /locus_tag="ACFM6C_001956"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(232..234),aa:Arg,seq:cct)
     gene            complement(287..733)
                     /locus_tag="ACFM6C_001957"
     CDS             complement(287..733)
                     /locus_tag="ACFM6C_001957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HFC6159346.1"
                     /translation="MNFSFVPLFLVTLILLGVVSNNNSITISATILLLMQQTALVQFV
                     PLVEKHGLNLGIILLTIGVLSPLVSGKAQVPPVAEFLNFKMISAVFIGIFVAWLAGRG
                     VPLMGQQPVLITGLLIGTVIGVAFMGGIPVGPLIAAGILSFVVGKG"
     gene            complement(738..1712)
                     /gene="ispB"
                     /locus_tag="ACFM6C_001958"
     CDS             complement(738..1712)
                     /gene="ispB"
                     /locus_tag="ACFM6C_001958"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HFC6159347.1"
                     /translation="MLENLPYFQRHLPEDLAKVNEVINRAVQSDVALISQIGTYIISA
                     GGKRLRPIMTILAGKAVGYDDEKLYSLAAMVEFIHTSTLLHDDVVDESDLRRGRATAN
                     NLFGNAAAVLVGDFLYTRAFQLMVASGSMRVLEVMADATNIIAEGEVMQLMNIGNTDI
                     TEEQYIQVIQYKTAKLFEAAAQVGAILGKASPEHEQALKDYGMYVGTAFQIIDDVLDY
                     SGETEETGKNVGDDLAEGKPTLPLIYLMRQGSEQVANDVRTALENADRSYFEKIHDYV
                     VRSDALAYSIGEARKAVDCAVAALDALPDSEVKDAMIQLAKESLVRVS"
     gene            1936..2244
                     /gene="rplU"
                     /locus_tag="ACFM6C_001959"
     CDS             1936..2244
                     /gene="rplU"
                     /locus_tag="ACFM6C_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HFC6159348.1"
                     /translation="MYAVVKTGGKQYKVSVGEKLKVEQIPAELDSQIELTEVLMIADG
                     ESVKVGAPFIEGAKVTAKVVAHGRGEKVRIFKMRRRKHYQKRQGHRQNFTQIEIVAIA
                     "
     gene            2269..2541
                     /gene="rpmA"
                     /locus_tag="ACFM6C_001960"
     CDS             2269..2541
                     /gene="rpmA"
                     /locus_tag="ACFM6C_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HFC6159349.1"
                     /translation="MASKKAGGSTRNGRDSEAKRLGVKAYGNELIPAGSIIVRQRGTK
                     FHAGDNVGMGKDHTLFAKVDGYVEFKTKGALNRKTVSIRPYTGSEE"
BASE COUNT          755 a          696 c          575 g          554 t
ORIGIN      
        1 ataaaacaac agatttccaa gccggaacat cttttacgga gcctgaaaat catttcatga
       61 ttctaccgtc ctaaaggtcg gtttttcaag caggaagaaa aagttttcag atggcaaaaa
      121 agccctccaa cactgaaagg ccttatatcg gaaacttccc gcaacacggg aaacagacaa
      181 atgcaaatcg tcaaacctcg ccaacaggaa tcgaacctgt attttacgct taggaggcat
      241 acgttctatc cgttgaacta tggcgagccg aaatgaaaag gagattttaa ccctttccga
      301 cgacaaaaga caagatgccg gccgcaatca gcggcccgac agggataccg cccataaatg
      361 ccaccccgat aaccgtcccg attaacagcc ctgtaattaa aacaggctgc tgtcccatca
      421 aaggcacgcc gcgtcccgcc agccaagcca cgaaaatacc gataaaaacg gcggatatca
      481 ttttaaaatt caaaaattcg gcaacgggag gaacctgcgc ctttcctgaa accaacggac
      541 tcaaaacccc tatggtcaaa agaatgatac cgagattcaa cccgtgcttc tcgaccaacg
      601 ggacaaactg taccaatgcc gtctgctgca tcagcagcaa tatggttgcc gagatggtaa
      661 tcgaattgtt gttgctgacc acccccaaca gaatcagcgt aaccagaaac aggggaacaa
      721 aactgaaatt catcgcctca agacaccctg accaaagatt ccttcgccag ctgaatcatg
      781 gcatccttca cttcgctgtc gggcagggca tccaacgcgg caacggcaca atcgactgct
      841 ttgcgcgcct cgcctatcga atatgccaac gcatccgaac ggacgacata atcgtggatt
      901 ttctcaaaat agctgcgatc tgcattttcc aaagcagtac gcacatcgtt cgcaacctgt
      961 tcggaaccct gacgcatcag ataaatcaaa ggcaaagtcg gttttccttc cgccaaatcg
     1021 tcgccgacgt ttttgccggt ttcttcggtt tcgccagaat agtccagcac atcgtcaata
     1081 atttggaatg ccgtgccgac gtacataccg tagtctttca acgcctgttc gtgttcgggg
     1141 gaagccttgc ccaaaattgc gccgacttga gcggcagctt caaacaattt tgccgtttta
     1201 tattggataa cttggatata ttgttcttcg gtaatgtccg tattgccgat gttcatcagc
     1261 tgcatgactt cgccctcggc aataatgttg gttgcatccg ccatcacttc caaaacgcgc
     1321 atactgcccg aggcaaccat cagttgaaag gcgcgcgtgt ataaaaagtc gccaaccaac
     1381 acagccgccg cattgccgaa cagattgttt gccgttgccc gcccacggcg caaatcgctt
     1441 tcatcgacga catcgtcgtg caggagggtg gaagtgtgga taaactcgac catcgccgcc
     1501 agcgaataca gtttctcgtc atcataaccg accgccttac ccgccaaaat cgtcataatc
     1561 ggacgcaggc gtttgccgcc cgcgctgatg atatatgtac cgatttgcga aatcagtgcg
     1621 acatcggatt gcaccgcacg gttgatgact tcattgactt tggcaaggtc ttcaggcaga
     1681 tgtcgctgga aatagggcag attctcgagc atggcagact ctcaggttta cgtttccgtc
     1741 aaacggcaga taccgcttga aagctgattc aaatagcggg caattatatc agcaaagcca
     1801 tcagggtaca tcttttcaga cggcatatgg ttatccgaac cgcgcaaact ttgacaaaac
     1861 aggcaaataa caatacaatg ccgagttccg cacaatggtg tgcggatatt aaccataacc
     1921 cttatggagt tgagtatgta cgcggtcgta aaaaccggcg gcaaacagta taaagtttcc
     1981 gtcggcgaaa aattgaaagt agaacagata ccagccgaac tcgacagcca aatcgaactg
     2041 accgaagttt tgatgattgc tgacggcgaa tctgtaaaag ttggcgcacc ctttatcgaa
     2101 ggtgcaaaag taacggctaa agtagtggca cacggtcgtg gcgaaaaagt ccgcatcttc
     2161 aaaatgcgcc gccgcaaaca ctaccaaaaa cgccaaggcc accgccaaaa tttcacccaa
     2221 atcgaaatcg tggcaatcgc ctaaccttaa aacttaggag cattacaaat ggcaagtaaa
     2281 aaagcaggcg gcagcacccg caacggtcgc gattcagaag ccaaacgctt gggcgttaaa
     2341 gcctacggca acgaactgat tcccgcaggt tccatcatcg tacgccaacg cggtaccaaa
     2401 ttccacgcag gcgacaacgt aggtatgggc aaagaccaca ctttgttcgc caaagttgac
     2461 ggttatgtcg aattcaaaac caaaggcgcg ctgaaccgta aaactgtcag catccgtcct
     2521 tacaccggtt ctgaagaata atccaaccga tacctgaagc cgcatctttt cacgatgcgg
//
LOCUS       DAXHPV010000205         2549 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.205, whole genome shotgun sequence.
ACCESSION   DAXHPV010000205 DAXHPV010000000
VERSION     DAXHPV010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2549)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2549)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2549
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.205"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            226..2451
                     /locus_tag="ACFM6C_001961"
     CDS             226..2451
                     /locus_tag="ACFM6C_001961"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004450 - isocitrate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HFC6159350.1"
                     /translation="MTQKSTIVYTHTDEAPALATQSLLPIVQAFARHADIDVKTADIS
                     LSGRILAAFPEYLTEAQRVPDALAELGELVKQPDANVIKLPNISASVPQLTAAIKELQ
                     SKGFAVPDYPANPQTDEEKAVRERYDRIKGSAVNPVLREGNSDRRAPKAVKNFAKKNP
                     HSMGAWTKDSKTHVATMQGGDFFHNEQSVTVPDATSVSIVFTDKQGNKKELREPVALK
                     AGEIIDATVMSKKALLAFLAEQVQDAKAKGVLFSLHMKATMMKVSDPIIFGHAVKVFF
                     APVFEKFGGKLAAAGVNVNNGFGNLLANLDKLDADTRAAVEAEIAAVYAANPDLAMVD
                     SDKGITNLHVPSDVIVDASMPAMIRNSGRMWDKNGKAQDTKAVIPDSSYAGVYQATID
                     FCREHGAFDPTTMGTVPNVGLMAQAAEEYGSHNKTFEIEADGQVQVIDAAGKVLMQHD
                     VEAGDIWRMCQTKDAPVKDWVQLAVNRARLSNTPAVFWLDENRPHDKSLLAKVKAYLA
                     ELDTNGLDIRVLAPEEAAKFSLGRLKNGEDTISVTGNVLRDYLTDLFPILELGTSAKM
                     LSIVPLMNGGGMFETGAGGSAPKHVQQFLEENHLRWDSLGEFLALAVSFEHLAQKTGN
                     AKAQVLADTLDAATEKLLLNDKSPKRKAGELDNRGSHFYLTLYWAQELAAQDKDAELK
                     AAFTPLAAALTADEAKIVAELSAVQGKAADIGGYYAANPEKAAQVMRPSVTFNQALNA
                     L"
BASE COUNT          691 a          774 c          595 g          489 t
ORIGIN      
        1 atcaatttca ccgaaaatat gccgccgcac atcatgcaca gcacctccga caccgccgcc
       61 aaacgcggga aaaccatttc ccccttcctt tcacgccgcc gcgttcaaac acgccaagat
      121 cgaacaaagc gcgaacaaag ccgccaaaat atgccataat agccgcgcac attccccgcg
      181 caatgtgttc caaaagaaaa aaccaaccta caagagaata atcctatgac tcaaaaatcc
      241 accattgttt atacccatac cgacgaagcc cccgcgctgg cgacccaatc gctgttgccg
      301 attgtgcagg cgtttgcccg ccacgccgat attgatgtca aaactgccga catttccctg
      361 tccggccgta ttttggcggc attccccgaa tacctgaccg aagcgcagcg cgtacctgat
      421 gcgcttgccg aattgggcga actggtgaaa cagcccgatg caaacgtaat caaactgccg
      481 aacatcagcg catccgtacc acaactgact gctgcgatta aagaattgca gtctaaaggc
      541 tttgccgttc ccgactatcc cgccaaccct caaaccgatg aagaaaaagc cgtgcgcgaa
      601 cgctacgacc gcatcaaagg cagcgcggta aaccctgtcc tgcgtgaagg caactccgac
      661 cgccgcgcgc ctaaagcagt gaaaaacttt gccaaaaaaa atccgcacag catgggcgca
      721 tggacaaaag actccaaaac ccacgttgct accatgcaag gcggcgactt tttccataac
      781 gaacaatccg ttaccgtacc cgatgcgact tccgtatcca tcgtgttcac cgacaaacaa
      841 ggcaacaaaa aagagctgcg cgagcctgtt gccctgaaag ccggcgaaat catcgacgcg
      901 accgtaatga gcaaaaaagc cctgctcgcc ttccttgccg aacaagtgca agacgcaaag
      961 gcaaaaggcg tattgttctc gctgcacatg aaggccacca tgatgaaagt gtccgacccg
     1021 attatcttcg gacacgccgt caaagtgttc ttcgcgcctg tatttgaaaa attcggcggc
     1081 aaactggctg ccgccggtgt caacgtcaac aacggcttcg gcaacctgct tgccaatttg
     1141 gacaaactgg atgcggacac ccgcgctgcc gttgaagctg aaatcgccgc cgtttacgcc
     1201 gccaaccctg atttagccat ggttgattcc gacaaaggca tcaccaacct gcacgttcct
     1261 agcgatgtca tcgtcgatgc ttctatgcct gcgatgattc gtaattccgg ccgtatgtgg
     1321 gacaaaaacg gcaaagcaca agacaccaaa gccgtgattc ccgacagcag ctatgccggc
     1381 gtttaccaag caaccatcga cttctgccgc gaacacggcg catttgaccc gacaaccatg
     1441 ggtactgtgc ccaacgtcgg actgatggcg caagcggcgg aagaatacgg ctcgcacaat
     1501 aaaactttcg aaatcgaagc cgacggtcag gttcaagtca tcgatgcagc gggcaaagtc
     1561 ctgatgcagc acgacgttga agccggcgat atttggcgta tgtgccaaac caaagacgct
     1621 ccggttaaag actgggtaca actcgccgtc aaccgcgctc gtctgagcaa cacgcctgcc
     1681 gtgttctggc tcgacgaaaa ccgtccgcac gacaagagcc tgctcgccaa ggtcaaagcc
     1741 taccttgccg aactggatac caatggcctc gacatccgcg tcctcgctcc tgaagaagcc
     1801 gccaagttca gcttgggtcg tctgaaaaac ggcgaagaca ccatctccgt aaccggtaat
     1861 gtcttgcgcg actacctgac cgacttgttc ccaattttgg aactcggcac aagcgcgaaa
     1921 atgctgtcta tcgttccatt gatgaacggc ggcggtatgt ttgaaactgg cgcgggcggt
     1981 tctgcaccga aacatgttca acaattcctc gaagaaaacc atttgcgctg ggactctttg
     2041 ggcgaatttc tcgcgctcgc cgtatcgttt gaacatttgg cgcaaaaaac cggcaatgcc
     2101 aaagcccaag tcctcgccga cactttggat gcagccaccg aaaaactgct gttgaacgac
     2161 aaatcgccta aacgcaaagc gggcgaactc gacaaccgcg gcagccattt ctaccttacc
     2221 ctctactggg cgcaagaatt ggcggcgcaa gacaaagatg ccgaactgaa agccgcattt
     2281 acgccattgg cagccgcttt gaccgccgac gaagcgaaaa tcgttgccga gctttccgcc
     2341 gtacaaggca aagcggccga catcggcggc tactacgccg ccaatcctga aaaagccgca
     2401 caagtgatgc gtccgagcgt aacctttaat caggcactaa acgccttata agcacaaagg
     2461 taaaaatgcc gtctgaacat tcgtcgttca gacggcatta gttatcccta tctgcctgat
     2521 tatgattaaa cgccgcaccc attggatat
//
LOCUS       DAXHPV010000206         2456 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.206, whole genome shotgun sequence.
ACCESSION   DAXHPV010000206 DAXHPV010000000
VERSION     DAXHPV010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2456
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.206"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            242..862
                     /locus_tag="ACFM6C_001962"
     CDS             242..862
                     /locus_tag="ACFM6C_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused MFS/spermidine synthase"
                     /protein_id="HFC6159351.1"
                     /translation="MNSTASKTLKGLSLVFFASGFCALIYQVSWQRLLFSHIGIDLSS
                     ITVIISVFMVGLGVGAYFGGRIADRFPSSIIPLFCIAEVSIGLFGLVSRGLISGLGHL
                     LVEADLPIIAAANFLLLLLPTFMMGATLPLLTCFFNRKIHNVGESIGTLYFFNTLGAA
                     LGSLAAAEFFYVFFTLSQTIALTACFNLLIAASVWLRYRKDGYSEH"
     gene            885..2336
                     /locus_tag="ACFM6C_001963"
     CDS             885..2336
                     /locus_tag="ACFM6C_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused MFS/spermidine synthase"
                     /protein_id="HFC6159352.1"
                     /translation="MLSFLSGLLSLGIEVLWVRMFSFAAQSVPQAFSFTLACFLTGIA
                     VGAYFGKRICRSRFVDIPFIGQCFLWAGIADFLILGAAWLLTGFSGFVHHAGIFITLS
                     AVVRGLIFPLVHHVGTDGNKSGRQVSNVYFANVAGSALGPVLIGFVILDFLSTQQIYL
                     LICLISAAVPLFCTLFQKSLRLNAVSVAVSLMFGILMFLLPDSVFQNIADRPDRLIEN
                     KHGIVAVYHRDGDKVVYGANVYDGAYNTDVFNSVNGIERAYLLPSLKSGIRRIFVVGL
                     STGSWARVLSAIPEMQSMIVAEINPAYRSLIADEPQIAPLLQDKRVEIVLDDGRKWLR
                     RHPDEKFDLILMNTTWYWRAYSTNLLSAEFLKQVQSHLTPDGIVMFNTTHSPHAFATA
                     VHSIPYAYRYGHMVVGSATPVVFPNKELLKQRLSRLIWPESGRHVFDSSTVDAAAQKV
                     VSRMLIQMTEPSAGAEVITDDNMIVEYKYGRGI"
BASE COUNT          534 a          573 c          580 g          769 t
ORIGIN      
        1 aatttccatt ttaaaacaat tagtaaaatc gagtttatct tagttgtcca ggacagcccc
       61 attattttta taacaccgtg aagccgcaca gcagtttgaa cagtgatacg ccgtttgcgg
      121 gcttacgagt ttattttccc ggcctgcagt ttgagcaata cggtgatttc ctacggttaa
      181 tacaaatgtt tacacattga tacatttcat ttatagttcc gcctatttga aaatagaaaa
      241 tatgaattcg accgcaagta aaaccctgaa aggattgtcg ctggtgtttt tcgcctctgg
      301 attctgcgcc ctgatttacc aggtcagctg gcagaggctt ctattcagtc acataggtat
      361 cgatttgagt tcgattactg tcattatttc tgtatttatg gtcggcttgg gtgtaggtgc
      421 gtatttcggt ggacgcattg ctgaccgttt tccttcaagt atcatccccc tgttttgcat
      481 cgctgaagta tccatcggtc tgttcggttt ggtaagcagg ggtctgattt ccggcttggg
      541 gcatctttta gttgaggctg atttgcccat catcgctgct gccaatttcc tcttattgct
      601 gcttcctacc tttatgatgg gcgcgacctt gcccttgctg acctgttttt ttaaccggaa
      661 aatacataat gttggcgagt ctatcggtac cttatatttt ttcaacactt tgggtgcggc
      721 actcggatcg cttgccgccg ccgaattttt ctacgtcttt tttaccctct cccaaaccat
      781 tgcgctgaca gcctgcttta accttctgat tgctgcttca gtatggctgc gttacagaaa
      841 ggatggatat agtgaacact aaaccgaata ctagtttgat ttatatgctt tctttcctta
      901 gcggcttatt gagcttgggt atagaagtct tgtgggtaag gatgttttcg ttcgcagcac
      961 agtccgtgcc tcaggcattt tcatttactc ttgcctgttt tctgaccggt atcgccgtcg
     1021 gcgcgtattt tggcaaacgg atttgccgca gccgctttgt tgatattccc tttatcgggc
     1081 agtgcttctt gtgggcgggt attgccgact ttttgatttt gggtgctgcg tggttgttga
     1141 cgggtttttc cggcttcgtc caccacgccg gtatcttcat taccctgtct gccgtcgtca
     1201 gagggttgat tttcccgctc gtacaccatg tgggtacgga tggcaacaaa tccggacgac
     1261 aggtttccaa tgtttatttc gccaacgttg ccggcagtgc attgggtccg gtccttatcg
     1321 gctttgtgat acttgatttc ttgtccaccc aacagattta cctgctcatc tgtttgattt
     1381 ctgctgctgt ccctttgttt tgtacactgt tccaaaaaag tctccgactg aatgcagtgt
     1441 cggtagcagt ttccctaatg ttcggcatcc tcatgttcct actgccggat tctgtctttc
     1501 aaaatattgc tgaccgtccg gataggctga ttgaaaacaa acacggcatt gttgcggttt
     1561 accatagaga tggtgataag gttgtttatg gggcgaatgt atacgacggc gcatacaata
     1621 ccgatgtatt caatagtgtc aacggcatcg aacgtgccta tctgctaccc tccctgaagt
     1681 ctggcatacg ccgcattttc gtcgttggat tgagtacagg ttcgtgggcg cgcgtcttgt
     1741 ctgccattcc ggaaatgcag tcgatgatcg ttgcggaaat caatccggca taccgtagcc
     1801 ttatcgcgga cgagccgcaa atcgccccgc ttttgcagga caaacgtgtt gaaattgtat
     1861 tggatgacgg taggaaatgg ctgcgtcgcc atcctgatga aaaattcgac ctgattttga
     1921 tgaatacgac ttggtactgg cgtgcctatt ccaccaacct gttgagtgcg gaatttttaa
     1981 aacaggtgca aagccacctt accccggatg gtattgtaat gtttaatacc acgcacagcc
     2041 cgcatgcttt tgctaccgcc gtacacagta ttccctatgc ataccgctat gggcatatgg
     2101 tagtcggctc ggcaaccccg gtagttttcc ctaataaaga actgctcaag caacgtctct
     2161 cccggttgat ttggccggaa agcggcaggc acgtatttga cagcagcacc gtggatgctg
     2221 cagcacaaaa ggttgtctct cgtatgctga ttcagatgac ggaaccttcg gctggggcgg
     2281 aagtcattac cgacgataat atgattgtag aatacaaata cggcagaggg atttaaccgt
     2341 cttaaagggt ttcaggcaac gcaggtttta ggtaacgtcc tgctagttca aaaaaaaccg
     2401 catcacagca gtcgggacaa aatggtttaa acattttgtc ccgaattctt attcct
//
LOCUS       DAXHPV010000207         2446 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.207, whole genome shotgun sequence.
ACCESSION   DAXHPV010000207 DAXHPV010000000
VERSION     DAXHPV010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2446
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.207"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            36..1391
                     /locus_tag="ACFM6C_001964"
     CDS             36..1391
                     /locus_tag="ACFM6C_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SLC45 family MFS transporter"
                     /protein_id="HFC6159353.1"
                     /translation="MSEYTPQTAKQGLPALAKSTIWMLSFGFLGVQTAFTLQSSQMSR
                     IFQTLGADPHSLGWFFILPPLAGMLVQPIVGHYSDRTWKPRLGGRRLPYLLYGTLIAV
                     IVMILMPNSGSFGFGYASLAALSFGALMIALLDVSSNMAMQPFKMMVGDMVNEEQKGY
                     AYGIQSFLANTGAVVAAILPFVFAYIGLANTAEKGVVPQTVVVAFYVGAALLVITSAF
                     TIFKVKEYDPETYARYHGIDVAANQEKANWIELLKTAPKAFWTVTLVQFFCWFAFQYM
                     WTYSAGAIAENVWHTTDASSVGYQEAGNWYGVLAAVQSVAAVICSFVLAKVPNKYHKA
                     GYFGCLALGALGFFSVFFIHNQYALILSYTLIGIAWAGIITYPLTIVTNALSGEHMGT
                     YLGLFNGSICMPQIVASLLSFILFPMLGGLQATMFLVGGVVLLLGAFSVFLIKETHGG
                     V"
     gene            1395..2414
                     /locus_tag="ACFM6C_001965"
     CDS             1395..2414
                     /locus_tag="ACFM6C_001965"
                     /EC_number="5.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016857 - racemase and epimerase activity,
                     acting on carbohydrates and derivatives [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldose epimerase family protein"
                     /protein_id="HFC6159354.1"
                     /translation="MSDTPTTPATRDFGLIDGRAVTGYVLSNRRGTRVCVLDLGGIVQ
                     EFSVLADGVRENLVVSFDDAASYADNPFQINKQIGRVAGRIRGAAFDINGRTYRVEAN
                     EGRNALHGGSHGLAVTRFNAVAADGRSVVLRSRLQQSADGYPNDLDLDISYRLDEDDR
                     LTVSYRATALGDTVFDPTLHIYWRLDAGLHDAVLHIPQGGHIPADAEKLPVSTVSDDL
                     EVFDFSRPKPLDAAVAALRRETGRAGFDDAYRVPSDIGRPAAVLQAGRRRRISIYSDR
                     NGLVIFTAAPQDFARHDAGVYDALATEAQTLPDSLHWPEFGNIRLNKGDIREATIAYG
                     IESLS"
BASE COUNT          453 a          669 c          728 g          596 t
ORIGIN      
        1 actatacttt tcaaatcaaa gaaaggattt accttatgtc ggaatatacg cctcaaacag
       61 caaaacaagg tttgcccgcg ctggcaaaaa gcacgatttg gatgctcagt ttcggctttc
      121 tcggcgttca gacggccttt accctgcaaa gctcgcaaat gagccgcatt tttcaaacgc
      181 taggcgcaga cccgcacagc ctcggctggt tctttatcct gccgccgctg gcggggatgc
      241 tggtgcagcc gattgtcggc cattactccg accgcacttg gaagccgcgt ttgggcggcc
      301 gccgtctgcc gtatctgctt tatggcacgt tgattgcggt tattgtgatg attttgatgc
      361 cgaactcggg cagcttcggt ttcggctatg cgtcgctggc ggctttgtcg ttcggcgcgc
      421 tgatgattgc gctgttagac gtgtcgtcaa atatggcgat gcagccgttt aagatgatgg
      481 tcggcgacat ggtcaacgag gagcagaaag gctacgccta cgggattcaa agtttcttag
      541 cgaatacggg cgcggtcgtg gcggcgattc tgccgtttgt gtttgcgtat atcggtttgg
      601 cgaacaccgc cgagaaaggc gttgtgccgc agaccgtggt cgtggcgttt tatgtgggtg
      661 cggcgttgct ggtgattacc agcgcgttca cgattttcaa agtgaaggaa tacgatccgg
      721 aaacctacgc ccgttaccac ggcatcgatg tcgccgcgaa tcaggaaaaa gccaactgga
      781 tcgaactctt gaaaaccgcg cctaaggcgt tttggacggt tactttggtg caattcttct
      841 gctggttcgc cttccaatat atgtggactt actcggcagg cgcgattgcg gaaaacgtct
      901 ggcacaccac cgatgcgtct tccgtaggtt atcaggaggc gggtaactgg tacggcgttt
      961 tggcggcggt gcagtcggtt gcggcggtga tttgttcgtt tgtattggcg aaagtgccga
     1021 ataaatacca taaggcgggt tatttcggct gtttggcttt gggcgcgctc ggctttttct
     1081 ccgttttctt catccacaat caatacgcat taatcctgtc ttatacctta atcggcatcg
     1141 cgtgggcagg cattattacc tatcctttga cgattgtaac caatgccctc tccggcgaac
     1201 acatgggtac ttatttgggc ctgtttaacg gctctatctg tatgccgcaa atcgtcgctt
     1261 cgctgttgag cttcatattg ttcccgatgc tgggcggctt gcaggccact atgttcttgg
     1321 tagggggcgt cgtcctgctg ctgggcgcgt tttccgtgtt cctgattaaa gaaacacacg
     1381 gcggggtttg agcgatgagc gataccccca ctacccccgc tacccgcgat ttcggcctga
     1441 tcgacgggcg tgccgtaacc ggctatgtgc tgtccaatcg gcgtggtaca cgcgtctgcg
     1501 tgctggactt gggcgggatt gtgcaggaat tttccgtttt ggcagacggc gtgcgcgaaa
     1561 acctcgtggt gtcgttcgac gatgcggctt cctatgcgga caatccgttt cagattaaca
     1621 aacagatagg gcgcgtggcc ggacgcatcc gcggtgcggc gttcgacatc aacggcagga
     1681 cttaccgcgt ggaggccaac gaaggcagga acgcgctgca cggcggttcg cacgggctgg
     1741 ccgttacccg tttcaacgcg gtggcggcag acggccgttc ggtggtgctg cgcagccgcc
     1801 tgcaacagtc ggccgacggt tatcccaacg atttggattt ggatatttcc taccgcttgg
     1861 acgaggacga ccggcttacc gttagctatc gcgccaccgc gctcggcgac acggtgttcg
     1921 acccgacgct gcacatttac tggcggctgg acgcgggcct gcacgatgcg gttctgcata
     1981 ttccgcaggg cggacatatt ccggccgatg ccgaaaaact gcccgtctca acggtttcag
     2041 acgacctcga agtatttgat ttcagccggc ccaagccgct ggatgccgcc gttgccgccc
     2101 tgcgccgcga aacgggtcgg gccggttttg acgacgctta ccgcgtgccg tccgatatag
     2161 gccgtcccgc cgctgtgttg caagccggac gccgccgtcg tatcagcata tacagcgacc
     2221 gcaacggctt ggtcatcttt accgccgccc cgcaggattt cgcgcggcac gatgcgggcg
     2281 tttacgacgc gctggcgacc gaggcgcaga cgctgcccga cagcctgcat tggcccgagt
     2341 tcggcaatat tcgtctgaac aagggtgata tcagggaggc gacgattgct tacggcatcg
     2401 aatccctttc ttaggagctt cctaacaccg gttgcagacg accttt
//
LOCUS       DAXHPV010000208         2429 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.208, whole genome shotgun sequence.
ACCESSION   DAXHPV010000208 DAXHPV010000000
VERSION     DAXHPV010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2429)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2429)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2429
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.208"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(227..1861)
                     /gene="groL"
                     /locus_tag="ACFM6C_001966"
     CDS             complement(227..1861)
                     /gene="groL"
                     /locus_tag="ACFM6C_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271863.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA];
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HFC6159355.1"
                     /translation="MAAKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAF
                     GGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAE
                     GMKYVTAGMNPTDLKRGIDKAVAALVDELKNIAKPCDTSKEIAQVGSISANSDEQVGA
                     IIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAALDNP
                     FVLLFDKKISNIRDLLPVLEQVAKASRPLLIIAEDVEGEALATLVVNNIRGILKTVAV
                     KAPGFGDRRKAMLQDIAILTGGVVISEEVGLSLEKATLDDLGQAKRIEIGKENTTIID
                     GFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEK
                     KDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHTGNADQDAGVQIVLRAVESP
                     LRQIVANAGGEPSVVVNKVLEGKGNYGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAA
                     SIAGLMLTTDCMIAEIPEDKPAVPDMGGMGGMGGMM"
     gene            complement(1954..2244)
                     /locus_tag="ACFM6C_001967"
     CDS             complement(1954..2244)
                     /locus_tag="ACFM6C_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HFC6159356.1"
                     /translation="MTIRPLHDRVVVKRLEAEEKTASGIVLPGAAAEKPDMGEVIAVG
                     AGKIGKDGARRPLDVKVGDKIIFGKYSGQTVKADGEELLVMREEDIFGIVEK"
BASE COUNT          485 a          641 c          641 g          662 t
ORIGIN      
        1 ttcgcgggaa tgacggcgga aaggttgctg tttttccgat aaattcctgc cgctcttcgt
       61 ttttgggatg gcgggaaata aaacaaaagc gcgcgtatca aaaaataaca atgcaaagaa
      121 cggtgttggc aattttaagg tttgcgcctt agccgcactt attcgcaaaa aaaccgcacg
      181 gcgttgaccg tgcggcttgt tgtctgaagg cttcagacgg cattgcttac atcatgccgc
      241 ccataccacc catgccgccc atatcaggca cagccggttt gtcttcgggg atttcagcga
      301 tcatgcaatc agtggtcagc atcaagccgg cgatagatgc ggcgtgttgc agcgcggaac
      361 gggttacttt ggcaggatcg agtacgccca tttcgatcat atcgccgtat tcgccgctgc
      421 cagcgttgta gccgtagttg cctttgcctt ccaacacttt gttcacaacc acactgggtt
      481 cgccgcctgc gttggcaacg atttggcgca gcggagactc gacggcgcgc aagacgattt
      541 gtacgcctgc gtcttggtcg gcattgccgg tgtgcaggtt ttccaaagca gcacgggcgc
      601 gcaacagggc tacgccgccg ccggcaacca cgccttcttc aacggcggcg cgggtagcgt
      661 gcagcgcgtc ttccacgcgg tcttttttct ctttcatttc gacttcggta gccgcgccga
      721 ctttgattac tgccacgccg cctgccagtt tggcaacgcg ctcttgcagt ttttctttgt
      781 cgtaatcgct ggttgcggtt tcgatttgtt ggcggatttc ggcaacacgc gcttcgattt
      841 gggctgcgtc gccgaagccg tcgatgatgg tggtgttttc tttaccgatt tcgatgcgtt
      901 tggcttgacc caaatcgtcc aaagtcgctt tttccagaga caggccgact tcttcggaaa
      961 tcactacgcc gccagtcagg atggcgatgt cttgcaacat cgctttgcgg cggtcgccga
     1021 agccaggggc tttcacggca acggttttca ggatgccgcg gatgttgttc accaccaaag
     1081 tcgccaaggc ttcgccttct acgtcttcag cgataatcaa cagcggacgg ctggctttgg
     1141 ccacttgttc caaaacaggc aacaggtcgc ggatgttgct gatttttttg tcgaacaaca
     1201 atacaaacgg attgtccaaa gcagcgattt gtttttcagc gtcgttgatg aagtaaggag
     1261 acaggtagcc gcggtcgaac tgcatacctt caaccacatc cagctcgttt tccaaagatt
     1321 tgccgtcttc aacggtaatc acgccttctt tgccgacttt ttccatcgct tcggcgataa
     1381 tcgcgccgac ttgttcgtca gagttggcgg aaatcgagcc gacttgggcg atttctttag
     1441 aagtgtcgca aggtttggcg atgtttttca gctcgtcaac caaagcggca acggctttgt
     1501 cgataccgcg tttcaggtcg gtcgggttca taccggcggt aacgtatttc ataccttcgg
     1561 caacgatgga ttgcgccaat acggtggcgg tagtcgtacc gtcgcctgcc acgtcgttgg
     1621 ttttggacgc gacttctttt accatttgcg cgcccatatt ttcaaacttg tctttcagtt
     1681 cgatttcttt ggcgacggtt acgccgtctt tggtgatgtg cgggccgccg aatgcgcggt
     1741 caaccaccac gttgcggcct ttggggccca aggttacgcg cacggcgttt gccagaatgt
     1801 tcacgccgtt taccattttt tggcggactt cattgccgaa ctgtacgtct tttgctgcca
     1861 tttcaattct ccaaaaatca ttaaaactgt ctgataaaac cgtttatgcc gtctgaaggc
     1921 ggtttgccgt ttcagacggc atcgtgtccg tatttatttt tcaacgatgc cgaaaatatc
     1981 ttcttcacgc attaccaaca gctcttcgcc gtcggctttg acggtttggc cgctgtattt
     2041 gccgaaaatg attttgtcgc cgactttgac atccagcgga cggcgcgcgc cgtctttgcc
     2101 gattttgccc gcgcccacgg cgatgacttc gcccatatcg ggtttttcgg cggccgcgcc
     2161 cggcaaaacg atgcccgatg cggttttttc ttcagcttcc aagcgtttga cgacaacgcg
     2221 gtcgtgtaaa ggacggatgg tcatatttat gctccgataa atgttttgaa aacaatcatc
     2281 tgcccgaacg gttcggacag attgaagtgg aaaccggaca gccgtcaagc agctgcccgt
     2341 ataagtcggc aaaattaggg tgtgtgcggg taaattcaag tgaggcggaa aaaatttatt
     2401 tccgccgttt tttatagtgg actaaattt
//
LOCUS       DAXHPV010000209         2401 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.209, whole genome shotgun sequence.
ACCESSION   DAXHPV010000209 DAXHPV010000000
VERSION     DAXHPV010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2401
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.209"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..1207
                     /locus_tag="ACFM6C_001968"
     CDS             <1..1207
                     /locus_tag="ACFM6C_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="HFC6159357.1"
                     /translation="RVQEVFECYETYITDGKGNLLGVPLRRGVSDSAFIDQISFSFHE
                     KTFFDKYGVRVSLLEDEDFIRAASMLAEEVFGFGLYKESKGSGGRFYERCWLMGSEDV
                     LYGRVHFGGQNNTILFELTGTGCGVAKEGWESRLFAFLTNAIRPKITRVDIAKDFFNG
                     EYSPNQAREDRNKGMFTCHHVKPKGECLGSDWEEDDEAKMTKGKTYGIGSRESSKYVR
                     VYEKGKQLGDKTSTWTRFEIEFKAKDIVIPFEVLQNPGEYFGGAYPICERFAQKATRI
                     HAVKEDKVISADRYLEWVKKQFGRAANGLKFIFPELDKAKLFELIEPSHHKLPKSLAP
                     EAYDCAFLKAQAIHEQPAFKPYKDPYYMYEYYENLEKQLEQQKHVNNEESYNNFIYDK
                     FARLPISWA"
     gene            1252..1542
                     /locus_tag="ACFM6C_001969"
     CDS             1252..1542
                     /locus_tag="ACFM6C_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159358.1"
                     /translation="MNIQLQGHIVGVKKFNGQIEGKSFDYCRLIVATPLDSSQGNALG
                     SSTTEYDFGGSANFEQFRNAQFPIEANLNVEIVTTGKTQKLKVIGFQLVKKG"
     gene            1547..1744
                     /locus_tag="ACFM6C_001970"
     CDS             1547..1744
                     /locus_tag="ACFM6C_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159359.1"
                     /translation="MQKVYVVQSVSTGDFLYLSPETGDIGHTKLITNADYFYDFEEAI
                     NAGLEEIGNQYEFVVFGFLKD"
     gene            1818..2036
                     /locus_tag="ACFM6C_001971"
     CDS             1818..2036
                     /locus_tag="ACFM6C_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HFC6159360.1"
                     /translation="MKFINTCRKYGAKLAVVTAAPLALAAHANATLPDTAKNALEAAK
                     ADGMEAGWIVVGVFAALFVFSIVKRVMK"
     gene            2043..2321
                     /locus_tag="ACFM6C_001972"
     CDS             2043..2321
                     /locus_tag="ACFM6C_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159361.1"
                     /translation="MYYQVGNKCLEKHQAENLYFSLVVPRIKENGQIVRPEYNGSLWK
                     MSDGQPLRLLLAECSPKDNLQSGLETGWIVFGILASVYFVSLLKKVLK"
BASE COUNT          708 a          549 c          554 g          590 t
ORIGIN      
        1 cagggttcag gaagtcttcg aatgttacga aacgtacata acggacggta aaggaaacct
       61 gttaggcgtt cctcttcggc gcggtgtatc agattcggct ttcattgatc aaattagctt
      121 ttcatttcat gaaaaaacct ttttcgataa atacggcgtt cgtgtaagtc ttttggaaga
      181 cgaagatttt attcgcgccg cgtccatgct cgccgaagaa gttttcggtt tcggtctcta
      241 caaagagtcc aaaggctcgg gcggtcgttt ttatgagcgc tgttggttga tgggttcgga
      301 agacgtccta tacggtcgcg tccattttgg cggacaaaac aataccatcc ttttcgaact
      361 gaccggcacc ggttgcggcg tcgcaaaaga aggctgggaa tcacgacttt tcgcatttct
      421 gactaatgca atccgcccaa aaatcacacg cgttgacatc gcaaaagact ttttcaacgg
      481 cgaatacagc ccgaaccaag cccgtgaaga ccgaaataaa ggtatgttta cctgtcatca
      541 cgtcaaacca aaaggcgaat gtttggggtc agattgggaa gaagacgatg aagccaaaat
      601 gaccaaaggc aagacctatg gtatcggctc ccgtgaatcg tccaaatatg tccgcgtcta
      661 tgaaaaaggc aagcagttgg gcgataaaac aagcacatgg acgcgctttg aaattgaatt
      721 caaagcaaaa gacatcgtta tccctttcga agttttgcag aatccgggcg aatatttcgg
      781 cggcgcatat ccgatttgcg aacgattcgc ccaaaaggca acgcgcatac acgcggttaa
      841 ggaagataag gtcatttcag ccgaccgcta ccttgaatgg gtaaaaaaac agttcggacg
      901 tgcggcaaac ggtctgaaat tcatttttcc cgaattggac aaagccaaac tgtttgaact
      961 gattgagccg agtcatcaca agttgcccaa gtctttggct cccgaagcct acgactgcgc
     1021 ctttttgaaa gctcaagcca ttcatgaaca gcccgcattc aaaccgtaca aagaccctta
     1081 ctatatgtac gaatattacg agaatcttga aaaacagctt gaacagcaaa aacacgtcaa
     1141 caatgaagaa agctataaca acttcattta cgacaaattc gcaagactac cgatttcatg
     1201 ggcttaaagt gtctgcccga aagacgttta atcacacaag gaaaccaaaa aatgaacatc
     1261 caacttcaag gccacatcgt cggcgttaaa aaattcaacg gacaaatcga aggcaagagc
     1321 ttcgactatt gccgcctgat tgtcgccaca cccttagaca gctcccaagg caacgcattg
     1381 ggcagctcta ctactgaata cgatttcggc ggctctgcca atttcgagca gttccgaaac
     1441 gcccaatttc cgatcgaagc aaacctgaac gtagaaatcg tcactacggg caaaacccaa
     1501 aaactgaaag tcatcggttt tcaactcgtg aagaaaggct gattgaatgc agaaagtcta
     1561 tgttgtccag tccgtatcaa caggggactt tctgtatctc tctcctgaaa cgggcgacat
     1621 cggacatacc aaattaatca ccaatgccga ttatttctac gacttcgaag aagcgattaa
     1681 cgcaggtttg gaagaaatcg gcaaccaata cgaatttgtc gtattcggat ttttgaaaga
     1741 ctgattttcg gatgttcggc ggtcgtctga aaaacgctcc atccattacc gccaaacact
     1801 ttttgaagga aaatatcatg aaatttatta acacctgccg taaatacggc gcaaaactgg
     1861 ctgttgtaac agctgctccc ctggctttgg ccgcacatgc aaatgcaacg ttgcccgata
     1921 cggcaaaaaa cgctttggaa gccgcaaaag cggacggtat ggaagccggt tggattgtag
     1981 tgggcgtttt cgccgcgctt tttgtctttt ccatcgttaa gagagtgatg aagtaagacg
     2041 gcatgtacta ccaagtcgga aataaatgtc ttgagaagca ccaggctgaa aacctttatt
     2101 tcagcttggt agtaccaaga atcaaagaaa acggacagat tgtcaggccg gaatataacg
     2161 gcagcctgtg gaagatgtcg gacggtcagc cgctaaggct tttattggcg gaatgcagtc
     2221 cgaaagacaa cctgcaaagc ggtcttgaaa caggctggat agtattcggc atcctcgcgt
     2281 ccgtttactt tgtttccctg ctgaaaaagg ttttgaaatg atggattttt atttttatct
     2341 cggcgtttcc gtacccgtat taatcggggc ggttctgttt aagaattgag cgcatgaagt
     2401 t
//
LOCUS       DAXHPV010000210         2347 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.210, whole genome shotgun sequence.
ACCESSION   DAXHPV010000210 DAXHPV010000000
VERSION     DAXHPV010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2347
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.210"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..336
                     /locus_tag="ACFM6C_001973"
     CDS             <1..336
                     /locus_tag="ACFM6C_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003696591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HFC6159362.1"
                     /translation="LYIIATTVPAQQTFLDAAELMQWSIETEGLGLNVISHKILGKDH
                     AQVEFEAYFRDGQHRSAHHELSGFVNIGGQWYFIDPTVPHPAMKQPCICGSGKKFKAC
                     CGKYLKPVA"
     gene            complement(555..1349)
                     /locus_tag="ACFM6C_001974"
     CDS             complement(555..1349)
                     /locus_tag="ACFM6C_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HFC6159363.1"
                     /translation="MLHRLQKVVRHIAQTEIMPRFLNTPSCRKEDGSMLSEADIAAQT
                     AFAAALPLLIDSPMLGEEMSRQEQSALWEQYSGEKGLWIVDPIDGTNNFVNGLPHFAV
                     SVAFVRNGRAELGVIYNPVSGECFYAERGQGAFLNGTRLPLRLVDKKLNEAIAGVEIK
                     YLRSGKLSSRMSTLAPFGTIRSMGSSTLDWCYLACGRYDVYVHGGQKLWDYAAGALIF
                     EEAGGRLTTLEGDGFWSGEHVFKRSVVAALEPKLFERWVGWIRENQ"
     gene            1453..2178
                     /locus_tag="ACFM6C_001975"
     CDS             1453..2178
                     /locus_tag="ACFM6C_001975"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HFC6159364.1"
                     /translation="MPRFYLPENLSVGQTVALPDNIVRHLNVLRVRPNENITLFNGKG
                     KAHAAQLTVLEKRRAEAEILHEDTTDNESPLNITLIQSISSGERMDFTLQKSVELGVT
                     AIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKM
                     PSESTKLIMSINRARKLGDIRQPSGAIVFMVGPEGGWTEQEEQQAFDAGFQAVTLGKR
                     ILRTETAPLAALAAMQTLWGDFA"
BASE COUNT          633 a          749 c          512 g          453 t
ORIGIN      
        1 ctatacatca tcgctactac cgttccggcg caacaaacat tcctcgatgc cgccgaactg
       61 atgcaatgga gtatagaaac cgaagggctg ggcttgaacg tcatctcgca caagatactc
      121 ggcaaagacc acgcccaagt cgaatttgaa gcctacttcc gagacggaca acaccgatcc
      181 gcgcatcacg aactgtccgg cttcgtcaac atcggcggac aatggtattt tatcgatccc
      241 accgttccgc atcctgcgat gaaacaaccc tgcatttgcg gatcgggcaa aaaattcaaa
      301 gcctgctgcg gcaaatatct gaaacctgtc gcataaaaat gccgtctgaa cgttcagacg
      361 gcattttcaa cgtgcaaaaa aaaaccattc ataccaaggg taagtatgaa tggtcaatac
      421 attgcgggaa aacgtcttac ttgctgcact gccgaaaagg gagaaacggc agcggtaatc
      481 agcggaaatg attgtacccg aattaatgtt aagaaacgtt aatcgcgaaa atatattaac
      541 aaacctgttg aaacctattg gttttcccgt atccacccga cccagcgttc aaacagcttc
      601 ggttcgagcg cggcaacgac cgagcgtttg aacacgtgtt caccactcca aaacccgtcg
      661 ccttccaaag tcgtcagcct gccgcccgcc tcctcgaaaa tcaacgcgcc ggcggcataa
      721 tcccacagct tctgcccacc gtgaacataa acatcataac gcccgcacgc cagataacac
      781 caatccaacg tactgctgcc catactccgt atcgttccaa aaggcgcgag cgtactcata
      841 cggctggaaa gtttgcccga acgcaaatat ttgatttcca cgcccgcaat cgcctcattg
      901 agttttttat ccacgagacg caaaggcagg cgggttccat taagaaacgc accctgcccc
      961 cgttcggcat aaaaacattc gccgctgacc ggattgtaaa tcacacccaa ttcggcgcgc
     1021 ccgttgcgga caaacgccac cgacacggca aaatgcggca gcccgttgac aaaattgttc
     1081 gtcccgtcta tcggatcgac aatccacagc cccttttccc ccgaatattg ttcccacaaa
     1141 gccgactgtt cctgccgcga catttcctcg cccaacatcg gactgtcgat taaaagcggc
     1201 aacgcggcgg caaaagccgt ctgcgcggca atgtccgcct cgctcaacat cgaaccgtct
     1261 tccttgcggc aagacggcgt attcaaaaaa cgcggcataa tttcggtttg cgcgatatgg
     1321 cgcacgactt tctgcaaacg gtgcaacact tcctactgtc ctcatatttt gaacttgcgg
     1381 cgcgcaaacg tataatgtcc gtttccatca cgccgctgcg acggattata accgtccgaa
     1441 ccgccaaaaa ctatgccccg attctacctg cccgaaaacc tttccgtcgg acaaaccgtc
     1501 gccctgcccg acaacatcgt ccgccacctc aacgtcctgc gcgtccgccc caacgaaaac
     1561 atcaccctct tcaacggcaa aggcaaggca cacgccgcac agctgaccgt tttggaaaaa
     1621 cgccgcgccg aagccgaaat cctgcacgaa gacacaaccg acaacgagtc cccgctcaac
     1681 atcacgctca tccaatccat atcttccggc gaacgtatgg actttaccct gcaaaaaagc
     1741 gtcgaactcg gcgtaaccgc catacagccc gtcatcagcg aacgctgcat cgtccgcctc
     1801 gacggagaac gcgccgccaa acgcctcgca cgctggcagg aaatcgtcat ctccgcgtgc
     1861 gaacaaagcg gcaggaacac cgttcccccc gtactgccca tcatcggcta ccgtgaagca
     1921 ctcgacaaaa tgccgtctga aagcaccaag ctgattatga gcatcaaccg cgcccgcaaa
     1981 ctcggcgaca tccgccaacc gtccggcgca atcgtcttta tggtcgggcc tgaaggcggc
     2041 tggacagaac aggaagaaca acaggcattt gatgccggct ttcaggcggt tacactcggc
     2101 aaacggattt tacgcacaga aaccgcccca ctcgccgccc tcgccgccat gcagacgctt
     2161 tggggcgatt tcgcataaac agaaatgccg tctgaaaccc gttcagacgg cattttgcag
     2221 ccgattaaga tagtaggttc aaataagatt tcccgtgtcg tcattcccgc gaaagcggga
     2281 atctagaaac gaaaaactac agggatttat ccgaaacaac aaccctctcc gccgtcattc
     2341 ccgcgca
//
LOCUS       DAXHPV010000211         2344 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.211, whole genome shotgun sequence.
ACCESSION   DAXHPV010000211 DAXHPV010000000
VERSION     DAXHPV010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2344)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2344)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2344
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.211"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            45..2258
                     /locus_tag="ACFM6C_001976"
     CDS             45..2258
                     /locus_tag="ACFM6C_001976"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015970 - guanosine tetraphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HFC6159365.1"
                     /translation="MTAISPIQDTQSATLQELREWFDSYCAALPNNDKKLVLAARSLA
                     EAHYPADAATPYGEPLPDHFLGAAQMVHELDLLPDAVAATLLADIGRYVPDWNLLVSE
                     RCNSTVAELVKGVDEVQKLTHFARVDSLATPEERAQQAETMRKMLLAMVTDIRVVLIK
                     LAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPE
                     KYREIALLLDEKRTERLEYIENFLNILRGELKKYNVHFEVAGRPKHIYSIYKKMVKKK
                     LSFDGLFDIRAVRILVDTVPECYTTLGIVHSLWQPIPGEFDDYIANPKGNGYKSLHTV
                     IVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKEGGKGDSAYEQKIAWLRQLLDWREN
                     MAESGKEDLAAAFKTELFNDTIYVLTPHGKVLSLPTGATPIDFAYALHSSIGDRCRGA
                     KVEGQIVPLSTPLENGQRVEIITAKEGHPSVNWLYEGWVKSGKAISKIRAYIRQQNAD
                     TVREEGRVQIDKQLAKLTPKPNLQELAENLGFKKLDDLYTAVGQGEISNRAIQKACGT
                     LNEPPPVPVSETTIVKQSKIKKGGKNGVLIDGEDGLMTTLAKCCKPAPPDDIVGFVTR
                     DRGISVHRKTCPSFRHLAEQAPEKVLDASWAALQEGQVFAVDIEIRAQDRSGLLRDVS
                     DALARHKLNVTAVQTQSRDLEASMRFTLEVKQVTDLPRVLASLGDVKGVLSVTRL"
BASE COUNT          597 a          760 c          569 g          418 t
ORIGIN      
        1 gctgttacaa taaactcgtt tttatcggaa cggaagaccc catcatgacc gccatcagcc
       61 cgattcaaga cacgcaaagc gcgactctgc aagaattgcg cgaatggttc gacagctact
      121 gcgccgcgct gccgaacaac gataaaaaac ttgtcttagc cgcccgttcg ctggcggaag
      181 cacattaccc cgccgatgcc gccacgccgt atggcgagcc gctgcccgac cacttcctcg
      241 gcgcggcgca aatggttcat gaactcgacc tgctccccga tgccgtcgcc gccaccctgc
      301 ttgccgacat cggacgctac gtccccgatt ggaacctatt ggtttccgaa cgctgcaaca
      361 gtaccgtcgc cgagctggtc aaaggtgtgg acgaagtgca gaaactcacc cacttcgccc
      421 gggtggacag cctcgccacg ccagaagaac gcgcccagca agcggaaacc atgcggaaaa
      481 tgctgctggc gatggttacc gacatccgcg tcgtgttaat caaactggcg atgcgtacgc
      541 gcaccctgca atttttaagc aacgcccccg acagccccga aaaacgcgcc gtcgccaaag
      601 aaaccctcga catcttcgcc ccgctcgcca accgtttggg cgtgtggcag ctcaaatggc
      661 agctcgaaga tttgggcttc cgccatcaag agcccgaaaa ataccgcgaa atcgcgctgc
      721 ttttggacga aaaacgcacc gaacgcctcg aatacatcga aaacttcctc aacatcctgc
      781 gcggtgaact caagaaatac aatgtccatt tcgaagtcgc cggccgcccg aaacacatct
      841 actccattta caaaaaaatg gtgaagaaaa aactcagctt cgacggcctc tttgacatcc
      901 gcgccgtgcg gattctggtt gataccgtcc ccgagtgtta caccacgctg ggcattgtcc
      961 acagcctttg gcagcctatc cccggcgagt tcgacgacta catcgccaac ccgaaaggca
     1021 acggctataa aagtttgcac accgtcatcg tcggtcccga agacaaaggt gtggaagtgc
     1081 aaatccgcac cttcgatatg caccaattca acgaattcgg tgtcgccgcc cactggcgtt
     1141 acaaagaagg cggcaaaggc gattccgcct acgagcaaaa aatcgcctgg ttgcgccaac
     1201 ttttggactg gcgcgaaaat atggcggaaa gcggcaagga agacctcgcc gccgccttca
     1261 aaaccgagct gttcaacgac acgatttacg ttttaacccc gcacggcaaa gtcctttccc
     1321 tgcctacggg cgcgacaccc atcgacttcg cctacgccct gcacagcagc atcggcgacc
     1381 gctgccgggg cgcgaaagtc gaagggcaaa tcgtgccgct gtccaccccg cttgaaaacg
     1441 gacagcgcgt cgaaatcatt accgccaaag aagggcatcc ttccgtcaac tggctgtacg
     1501 aaggctgggt caaatccggc aaggcaatca gtaaaatccg cgcctacatc cgccagcaaa
     1561 acgccgacac cgtgcgcgaa gaaggccgcg tccaaatcga caagcagctt gccaaactca
     1621 cgcccaagcc caacctgcaa gagcttgccg aaaacctcgg cttcaaaaaa ctcgacgacc
     1681 tctacactgc cgtcggacaa ggcgaaattt ccaaccgcgc catccaaaaa gcctgcggca
     1741 cgctgaacga acctccgccc gtacccgtca gcgaaaccac catcgtcaaa cagtccaaaa
     1801 tcaaaaaagg cggcaaaaac ggtgtgctca ttgatggcga agacggtttg atgaccacgc
     1861 ttgccaaatg ctgcaaaccc gcgccgcccg acgacattgt cggcttcgtt acccgcgatc
     1921 gcggcatttc ggtacaccgc aaaacctgcc cctctttccg acacctcgcc gaacaagcac
     1981 ctgaaaaagt gctggacgca agctgggcgg cgttgcagga aggacaagtg tttgccgtcg
     2041 atatcgaaat ccgcgcccaa gaccgctccg ggcttttgcg cgacgtatcc gacgcgctcg
     2101 cccgccacaa actcaacgtt accgccgtgc aaacccagtc ccgcgacttg gaagccagca
     2161 tgaggttcac gctcgaagtc aaacaagtta ccgacctccc acgcgtcctc gccagcctcg
     2221 gcgacgtcaa aggcgtattg agcgttaccc ggctttaaat acaaaaatgc cgtctgaaag
     2281 ccgtataacg cttcagacgg cattttgatt gccggggttt gctatttttt gttgcataat
     2341 caat
//
LOCUS       DAXHPV010000212         2305 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.212, whole genome shotgun sequence.
ACCESSION   DAXHPV010000212 DAXHPV010000000
VERSION     DAXHPV010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2305)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2305)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2305
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.212"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            53..610
                     /locus_tag="ACFM6C_001977"
     CDS             53..610
                     /locus_tag="ACFM6C_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HFC6159366.1"
                     /translation="MGFGCREGREFCKGLSLPEIIRDLLEMPSETAIADITRTYSAHY
                     LNPNNRNMSLFPQALPCLDKLKAQGYWLAVATGKGRAGLDNAISQTATGGYWLATACA
                     GEYPSKPSPEMVFGICGKLGLDPKEALVVGDTAHDLHMAANAGAAAVGVATGAHSREQ
                     LLGAPHLAVLDDLSELPGFLAQHYA"
     gene            complement(697..1665)
                     /gene="ispH"
                     /locus_tag="ACFM6C_001978"
                     /gene_synonym="lytB"
     CDS             complement(697..1665)
                     /gene="ispH"
                     /locus_tag="ACFM6C_001978"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-enyl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA];
                     GO_process: GO:0050992 - dimethylallyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HFC6159367.1"
                     /translation="MNEKTIILANPRGFCAGVDRAISIVERALEEFGAPIYVRHEVVH
                     NKFVVDNLREKGAVFIEDLAEVPPGATLVYSAHGVSKAVQQEAAERGFRVFDATCPLV
                     TKVHKEVARLDAQDCEIIMIGHKGHVEVEGTMGQLAPGKMLLVETVGDVAKLEVRNPD
                     KLAYVSQTTLSVDETKDIIAALNARFPNIRNPHKEDICYATTNRQTAVKELAEQCDIV
                     IVVGSPNSSNSNRLREVAASRGIDAYMVDNAGYLQRAWFEGKNKVGVTAGASAPEVLV
                     QEVLATIRGWGHETVREGEGAEESIVFVLPKELRREGETKPDLCKR"
     gene            complement(1694..2221)
                     /gene="lspA"
                     /locus_tag="ACFM6C_001979"
     CDS             complement(1694..2221)
                     /gene="lspA"
                     /locus_tag="ACFM6C_001979"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HFC6159368.1"
                     /translation="MVLFYRLLKNMSSSVSSKTRYWVLALAAIVLDQWSKWAVLSSFQ
                     YRERVNVIPSFFDLTLVYNPGAAFSFLADQGGWQKYFFLVLAVTVSAYLVRAILRDEF
                     ATLGKTGAAMIIGGALGNVIDRLIHGHVVDFLLFYWQNWFYPAFNIADSFICVGAVLA
                     VLDNIVHRKTQEEKY"
BASE COUNT          522 a          689 c          574 g          520 t
ORIGIN      
        1 gtttgggtag aattaggagg tatttggggc gaaaacagcc gaaaatctgt gtttgggttt
       61 cggctgtcgg gagggaaggg aattttgcaa aggtctcagc ctgcccgaaa tcatccgcga
      121 cctgctcgaa atgccgtctg aaaccgccat tgccgacatc acacgcactt attccgcaca
      181 ttacctcaat cccaacaacc gcaatatgtc cttatttcct caggcactgc cctgtctgga
      241 caagctcaaa gcacaaggat actggcttgc cgtcgccacg ggcaaagggc gggcgggttt
      301 ggacaacgcc atcagccaaa ccgccaccgg cggctattgg ctcgccaccg cctgcgcggg
      361 ggaatatccc tccaaaccct cgcccgaaat ggtattcgga atctgcggca aactgggact
      421 cgatccgaaa gaggcattgg tcgtcggcga tacggcgcac gacctgcata tggcggcgaa
      481 cgcgggtgcg gcggcagtcg gcgttgccac cggcgcacat tcgcgcgaac agctccttgg
      541 cgcaccgcat ctcgccgtat tggacgactt gtccgaactg cccggttttc ttgcacagca
      601 ttacgcctga ttggtttccg catccggcac gcggcaaaaa tgccgtctga agcctgttca
      661 gacggcattt gtgttgccca aacattcaac gcttgctcaa cgcttgcaca aatcgggttt
      721 ggtttcgccc tcgcggcgca actctttggg caggacgaac acgatgcttt cttccgcacc
      781 ctcgccttcg cgcacggttt catgccccca cccgcgtatg gttgccaata cttcctgcac
      841 caacacttcg ggcgcggacg cgcctgccgt tacgccgact ttgtttttgc cctcaaacca
      901 tgcgcgttgc aggtagcctg cattatccac catatacgca tcgattccgc gcgatgccgc
      961 cacttcgcgc aagcggttgc tgttagacga attgggcgaa ccgaccacaa tcacgatgtc
     1021 gcactgttct gccaactctt tgacggcggt ttgccggttg gtcgtcgcat agcagatgtc
     1081 ttccttgtgc ggattgcgga tattggggaa acgcgcgttc agcgcggcga tgatgtcttt
     1141 ggtttcatcg accgagagcg tggtttggct gacataggcg agtttgtcgg ggtttctgac
     1201 ttcgagtttt gccacatctc ctaccgtttc gaccaaaagc attttgcccg gcgcaagctg
     1261 ccccatcgtt ccttcgacct cgacatgacc cttatgtccg atcatgatga tttcacagtc
     1321 ttgggcatcc agtcgggcga cttccttatg cactttcgtc accagcgggc aagtcgcatc
     1381 aaatacccgg aaaccacgtt ccgccgcttc ttgctgcacc gccttcgata cgccgtgtgc
     1441 cgaataaacc agcgtcgcgc ccggcggcac ttccgccaag tcttcgataa acaccgcgcc
     1501 tttttcacgc aggttatcga cgacgaattt gttgtggacg acttcgtggc gcacataaat
     1561 cggcgcgccg aattcttcca aagcacgttc gacaatactg attgcccgat ccacaccagc
     1621 gcagaagccg cgcggattgg caaggatgat ggttttctcg ttcataagcc cggtatttcg
     1681 ttttcagacg gcatcaatat ttttcttctt gggttttacg gtggacgatg ttgtccaaca
     1741 ctgccaacac cgcaccgacg cagataaagc tgtcggcaat attaaaggcg ggataaaacc
     1801 aattttgcca ataaaacaat aagaaatcga cgacatgacc gtgtatcagg cggtcgatga
     1861 cattgcctaa cgcaccgccg ataatcattg ccgcacccgt tttgccgagg gttgcaaact
     1921 catcgcgcaa gatggcgcgt accaaatacg cgctcaccgt caccgccagc accaaaaaaa
     1981 agtatttttg ccagccgccc tgatcggcaa ggaagctgaa cgccgcaccc gggttgtaca
     2041 ccagcgtcaa atcgaaaaag gaaggaatga cattgacgcg ttcccgatac tgaaacgacg
     2101 acagcaccgc ccacttcgac cactggtcca gcacgatggc ggcaagtgcc aatacccaat
     2161 agcgcgtttt acttgaaaca gatgaagaca tatttttcaa cagccggtaa aagagtacca
     2221 ttttacccga aaaccccctt tcctgtaccc gaaacggcaa atgccgtaat cttaaaaccc
     2281 gtcattcccg acaacaccgt aatct
//
LOCUS       DAXHPV010000213         2282 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.213, whole genome shotgun sequence.
ACCESSION   DAXHPV010000213 DAXHPV010000000
VERSION     DAXHPV010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2282)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2282)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2282
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.213"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(26..1435)
                     /gene="dacB"
                     /locus_tag="ACFM6C_001980"
     CDS             complement(26..1435)
                     /gene="dacB"
                     /locus_tag="ACFM6C_001980"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_function: GO:0009002 - serine-type D-Ala-D-Ala
                     carboxypeptidase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine
                     carboxypeptidase/D-alanyl-D-alanine-endopeptidase"
                     /protein_id="HFC6159369.1"
                     /translation="MNFPKTAASLLLLLASLAAHALDTGRIPQNEIAVYVQELDSGKV
                     IIDHRSDVPVNPASTMKLVTAFAAFKTFGSNYRWATEFKSNGTVNDGTLDGNLYWAGS
                     GDPVFNQENLLAVQRQLREQGIRNITGHLMLDHSLWGEVGSPDDFEADSGSPFMTPPN
                     PTMLSAGMVMVRAERNAAGSTDILTDPPLPHIFAQNNLKITASQAACPSIKKLMRASF
                     SDNTLKLRGNIPESCLGKPVGVRMFALDELIRQSFTNHWLLGGGRISDGIGIADTPEG
                     AQTLAVAHSKPMKEILTDMNKRSDNLIARSVFLKLGGDGKLPAVSEQAASAVRRELAV
                     SGIDVADLVLENGSGLSRKERVTARMMAQMLETAYFSPFAQDFIDTLPIAGTDGTLRN
                     RFKQSGGLLRLKTGTLNNVRALAGYWLGDKPMAVVVIINSGRAISLLPDLDNFVAKNI
                     ISGGDGWLDAKLMCKERRA"
     gene            1600..2166
                     /locus_tag="ACFM6C_001981"
     CDS             1600..2166
                     /locus_tag="ACFM6C_001981"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008752 - FMN reductase (NAD(P)H) activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0052873 - FMN reductase (NADPH) activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent FMN reductase"
                     /protein_id="HFC6159370.1"
                     /translation="MAKKISILVGSLRRASFARKVALNAAEMFPEGWQAEIVEIGHLP
                     LYNFDYDDPAVEDVPLPESYTVFRETIKASDGILFVTSENNRTIPACLKNAVDIGSKP
                     NADVAWKNKPAGIISHSVGKMGGYSSQKNLRLALSYFDMPVTGQPEVFLGNSPTLFDE
                     NGKLIDSARDFVQSYINQFVGLIERNAK"
BASE COUNT          519 a          560 c          657 g          546 t
ORIGIN      
        1 atttaatcca ctatattttc ctgtttcagg ctcggcgttc tttgcacatc agtttcgcat
       61 ccagccagcc gtcgccgccg gagatgatgt ttttggcaac gaagttgtcc aagtctggca
      121 gcagggaaat ggcgcgaccg ctgttgatga tgacgaccac cgccatcggt ttgtcgccca
      181 gccaataacc tgcaagggcg cggacattgt tgagcgtgcc ggtttttaag cgcaacagcc
      241 cgccgctttg tttgaagcgg ttgcgtaaag tcccgtctgt gccggcgatg ggcagcgtgt
      301 cgatgaaatc ttgtgcaaac gggctgaaat aagccgtttc caacatttgc gccatcattc
      361 tcgccgttac cctttctttt ctggacagac ccgaaccgtt ttccaaaacc aaatccgcaa
      421 catcgatgcc cgacacggca agttctcgcc ggacggcaga cgctgcctgt tcggaaacgg
      481 cgggcagttt gccgtcgccg ccgagtttga ggaagacgga acgcgcaatc agattgtccg
      541 aacgcttgtt catgtccgtc aaaatttcct tcatcggctt tgagtgtgca acggcaagcg
      601 tctgcgcgcc ttccggcgtg tcggctatgc cgataccgtc tgaaatccgt ccgccgccga
      661 gcagccagtg gttggtaaaa ctttgccgga tcagttcgtc aagcgcgaac atccggacac
      721 cgacaggctt gcccaaacag ctctcgggaa tattgccgcg caatttcagc gtattgtccg
      781 aaaaagatgc acgcatcagt tttttgatcg aagggcaggc agcttgggag gcggtaattt
      841 tcaagttgtt ttgggcgaaa atatgcggca aaggcggatc ggtgaggatg tcggtactgc
      901 cggcggcatt gcgttcggcg cgcaccataa ccataccggc agacagcata gttggattgg
      961 ggggcgtcat aaacggcgaa ccgctgtcgg cttcgaaatc gtcggggctg ccgacttcgc
     1021 cccacaggct gtggtcgagc atcaggtgtc ccgtgatatt gcgtatgcct tgttcgcgca
     1081 actggcgttg gacggcaagc aggttttcct gattgaaaac ggggtcgccg ctgcccgccc
     1141 aatacaggtt tccgtcaagc gtgccgtcgt ttaccgtacc gttgctttta aactcggtcg
     1201 cccagcggta attgctgccg aaggttttga aggcggcaaa cgcggtaacg agtttcattg
     1261 tggaggcggg gttgacgggg acatccgagc ggtggtcaat gatgactttt ccgctgtcaa
     1321 gctcttggac atatacggcg atttcgtttt gcggaatgcg acccgtatcg agcgcgtgtg
     1381 cggcgaggga ggcgagaagc agcagcaggg aggccgctgt tttggggaaa ttcataggta
     1441 aatctgttac ataaaaaaag caattataag gcaaagccgg ataagtggga acgctgtggc
     1501 ggcgggccgg cttgtttgca ggggaaatca catatataat aatcgctatc attatgaaat
     1561 gattgagacg cacaaactta atattcagga ggaatgatta tggctaagaa aatcagtatt
     1621 ttggtgggca gcctgcgccg agcttctttt gcgcgcaaag tggcattgaa tgcggcggag
     1681 atgttccctg aaggctggca ggcggaaatc gtcgaaatcg gacatctgcc gctttacaat
     1741 ttcgattatg acgaccctgc ggtggaagat gtgccgctgc ccgaaagcta cacggttttc
     1801 cgcgaaacga ttaaggcttc ggacggcatt ttgttcgtta cgtccgaaaa taaccgcacc
     1861 attcccgcct gtttgaaaaa tgcggtggac atcggctcga aaccgaatgc cgacgtggcg
     1921 tggaaaaaca aaccggccgg catcatcagc cattccgtcg gcaagatggg cggttacagt
     1981 tcccaaaaaa acctgcgcct tgcgctgtct tatttcgata tgcccgtaac cggacagccg
     2041 gaagtgtttt tgggcaattc gccgacgctg tttgatgaaa acggcaaatt gattgactcg
     2101 gcaagggatt ttgttcagtc atatattaat cagtttgtcg gtttgattga aagaaatgcc
     2161 aaataaacaa accaagtcga aaggccgcaa aaccggttcg ggttttgcgg cttttttata
     2221 tgggctgggc agcgtcaagg tttgccgttt gccggataat gcgcggcaaa tgaccggcgt
     2281 gt
//
LOCUS       DAXHPV010000214         2269 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.214, whole genome shotgun sequence.
ACCESSION   DAXHPV010000214 DAXHPV010000000
VERSION     DAXHPV010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2269)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2269)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2269
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.214"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..574)
                     /locus_tag="ACFM6C_001982"
     CDS             complement(<1..574)
                     /locus_tag="ACFM6C_001982"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010931119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HFC6159371.1"
                     /translation="MEHKLPQLPYEPDALSPHLSKETLEFHYGKHHQTYITNLNNQIK
                     GTEFENLPLEEIVKKSSGGVFNNAAQTWNHTFYWLGFTPKGQGKPAGELAAAIDAKWG
                     SFEKFQEAFSACAAGTFGSGWAWLVKTPAGGLDLVSTSNAATPLTTENTPLLTCDVWE
                     HAYYIDYRNSRPNYLKGFWEIVNWDEVAKRF"
     gene            738..2144
                     /gene="dnaB"
                     /locus_tag="ACFM6C_001983"
     CDS             738..2144
                     /gene="dnaB"
                     /locus_tag="ACFM6C_001983"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HFC6159372.1"
                     /translation="MNDYAAMPSEDREVGALSLPPHSMEAEQSVLGGLMLENPAWDRI
                     ADVVSGEDFYRHEHRLIFRSIAKLINESRPADVITVQEDLQRNEELEAAGGFEYLITL
                     AQNTPSAANIRRYAEIVRERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQ
                     IAESTAKSKQGFLEMPDLLKEVVQRIDMLYSRDNPDEVTGVPTGFIDLDKKTSGLQPG
                     DLIIVAGRPSMGKTAFSINIAEHVAVEGKLPVAVFSMEMGGAQLVMRMLGSVGRLDQS
                     VLKTGRLEDEHWGRLNEAVVKLSDAPVYIDETPGLTALELRARARRLARQFNNKLGLI
                     VIDYLQLMAGSGRSDNRASELGEISRSLKALAKELQVPIIALSQLSRTVESRTDKRPM
                     MSDLRESGAIEQDADLIMFMYRDEYYNQDSPMKGLAECIIGKHRNGPVGKIFLTWTGQ
                     FTKFDNAAYIPEEAKIED"
BASE COUNT          545 a          575 c          620 g          529 t
ORIGIN      
        1 cgaagcgttt ggcgacttcg tcccagttga cgatttccca aaaacctttc aggtagttgg
       61 gacggctgtt gcggtagtcg atgtaatagg cgtgttccca cacgtcgcaa gtcaagagcg
      121 gcgtgttttc agtggtcagc ggcgtagcgg cgttggaagt ggaaaccaaa tccaatccgc
      181 cggcaggggt ttttaccagc cacgcccaac cggagccgaa agtaccggca gcgcaagcgg
      241 agaatgcttc ttggaatttc tcgaagctgc cccatttcgc gtcgatagcg gcggccagtt
      301 cgccggcagg tttgccttga cctttgggcg tgaaacccag ccagtagaaa gtgtggttcc
      361 aagtttgggc tgcgttgttg aacacgccgc ccgaagattt tttcacaatc tcttccaaag
      421 gtaggttttc aaattcggtg cctttgattt gattgttcag gttggtgatg taggtttgat
      481 ggtgtttgcc gtagtggaat tccaaagttt ctttgctcag atgcggggac aatgcgtccg
      541 gttcataagg cagttgcggc agcttatgtt ccattttgtg ctcctaatgt tgtttttgga
      601 tgttgtgttt tggcagtgtt gctgcaaacg aatcggcagc acacgcattc tacctgtttt
      661 gagggatgga aaccaattga acctgcttta cgctataata gaagattgca atttcggcac
      721 gacagatagg atgtaccatg aacgattacg ccgctatgcc gtctgaagac cgtgaggtcg
      781 gcgcattgtc gctgcctcca cattcgatgg aggcagaaca atccgttttg ggcgggttga
      841 tgctggaaaa tccggcttgg gacaggattg ccgatgtggt ttcgggagag gatttctacc
      901 gccacgaaca ccgcctgatt ttccgatcca ttgccaaatt aatcaatgag agccgtcccg
      961 ccgatgtgat tacggttcag gaagatttgc agcggaacga agaattggaa gcggcaggcg
     1021 gattcgaata tctgattacg ctggcgcaaa acaccccgtc tgccgccaac atccgccgct
     1081 acgccgaaat cgtgcgcgag cgttccatta tgcgccaact cgccgaagtg gggacggaaa
     1141 tcgcccgcag cgcctacaat ccgcaaggca gggacgcggg gcagcttttg gacgaggcgg
     1201 aaaacaaagt attccaaatc gccgaaagca cggccaaatc caagcagggc tttttggaga
     1261 tgcccgattt gctgaaagaa gtcgtacagc gcatcgatat gctctactcg cgcgacaatc
     1321 ccgatgaagt taccggcgtg ccgacagggt ttatcgacct cgacaaaaaa acctcgggtc
     1381 tgcagcccgg cgacctgatt atcgttgccg gccgtccgtc tatgggtaag accgcctttt
     1441 cgatcaatat tgcggaacac gttgccgtag aaggcaagct gcccgttgcc gtcttttcga
     1501 tggagatggg cggtgcgcaa ctggtcatgc gtatgctcgg ctcggtcgga cggttggatc
     1561 aaagcgtcct gaaaacaggc aggttggaag acgaacattg gggtcgtctg aatgaagcag
     1621 tcgtcaaact ctcagacgcg cccgtgtaca tcgacgagac cccgggtctg actgcgctcg
     1681 aactgcgcgc ccgcgcccgt cgtctcgccc gtcaatttaa caataagctg ggattaatcg
     1741 tcatcgacta cctgcaactg atggcgggat ccggccgttc cgacaaccga gcttcagagc
     1801 tgggcgaaat ttcacgttcg ctcaaagcgt tggcgaaaga attgcaagtc cccatcatcg
     1861 ccctgtcgca actgagccgc acggtcgaat cgcgtaccga caaacgcccg atgatgtccg
     1921 accttcgcga atccggtgct atcgagcagg atgccgacct gattatgttt atgtaccgcg
     1981 acgaatacta caaccaagac tcgcccatga aaggccttgc cgaatgtatc atcggcaaac
     2041 accgcaacgg tcccgtcggt aaaatcttcc tcacatggac ggggcaattc accaaattcg
     2101 acaatgctgc ctatattccc gaggaggcaa agatagaaga ttaaatggct atataaaaat
     2161 ttattaggcg aaatcaggca aaatcgttta aaatcatgct gagagattgc cctaaaaaat
     2221 aaaacgcggt cttgaggcat ttttgcattc agcccgcata taattgaaa
//
LOCUS       DAXHPV010000215         2263 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.215, whole genome shotgun sequence.
ACCESSION   DAXHPV010000215 DAXHPV010000000
VERSION     DAXHPV010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2263)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2263)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.215"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            146..532
                     /locus_tag="ACFM6C_001984"
     CDS             146..532
                     /locus_tag="ACFM6C_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF596 domain-containing protein"
                     /protein_id="HFC6159373.1"
                     /translation="MKGLDKYILFKNCETLGELFRIYQDYLSLNIDDPNLKIKFFDLL
                     EELLSDGVIELCDYRENPPKILTGSPKTQVDELRKIWPDMEEMLLYFPDNPWHYVEWF
                     WWGATCPIELTQLPKIEIYEEQMKQA"
     gene            560..1885
                     /locus_tag="ACFM6C_001985"
                     /pseudo
     CDS             560..1885
                     /locus_tag="ACFM6C_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573825.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin repeat-containing protein"
BASE COUNT          799 a          522 c          513 g          429 t
ORIGIN      
        1 gaccttggaa aggaacgacc atcattttaa ggaatttttc aactagccga gaacaaactg
       61 gagcaaaatg gacgattgag tttcaaaatc atccattagt aggtaggaaa aaaatggaat
      121 taaaatttag ataaggaatt gaataatgaa aggtttagat aagtatatcc tatttaaaaa
      181 ttgtgaaaca ttaggagaat tgtttcgaat atatcaagac tatctatcat taaatattga
      241 tgacccaaat ttaaaaatta aattttttga ccttttggaa gaacttttat cagatggtgt
      301 tattgaatta tgcgattatc gtgaaaatcc tccaaaaata ttaaccggtt cgccaaaaac
      361 acaggtagat gaattaagaa aaatttggcc ggatatggaa gagatgttgc tatattttcc
      421 agataaccct tggcattatg ttgaatggtt ttggtgggga gcaacttgcc ctattgaact
      481 gacacaattg cctaaaatag aaatttacga agaacaaatg aaacaagctt aaagccagcg
      541 taaccagcct gtatgacaag gtgcaggtga acaatccaat atccacatta ccggctcaga
      601 tgttgccggc aaagaaggaa ccggcctgat tgcagataag caaatccatc tgcaatcagc
      661 cgagcaaagt aataccgaac gcagccaaaa caaatcggca ggctggaacg caggtgctgc
      721 cgtatcattc ggacaaggag gctggtcatt aggcgttacc gcaggcggca atatcggcaa
      781 aggccacggc aatggcgaca gcatcaccca ccgccatagc catatcggcg acaaaggcag
      841 ccaaaccctt atccaaagtg gtggcgatac taccatcaaa ggcgcgcaag tacgcggcaa
      901 aggcgtacaa gtcaatgcca aaaacctaag tattcaaagc gtacaagata gcgaaaccta
      961 tcaaagcaaa caacaaaacg ccagtgcaca agtgaccgtc ggttatggct tcagtgccag
     1021 tggcgattac agccaaagca aaatccgagc caatcatgct tcggtaaccg agcaaagcgg
     1081 tatttatgcc ggagaagacg gctatcaaat caaggtcgga aaccatacag acctcaaagg
     1141 cggcatcatc accagtaccc aaagcgcaga agacaagggt aaaaaccgat tcagcacagg
     1201 cacactcgcc ggcagtgata ttcaaaatta cagccaatac gaaggaaaaa gttttggatt
     1261 gggcgcaagt gcgtccataa gcggcaaaac actgggacag ggcgcacaaa ataagcctca
     1321 aaacaaacac ctgacaagcg tggccgataa aaacggcgca agttcatcag taggctacgg
     1381 cagcgacagc gacagccaaa gcagcatcac aaaaagcggc atcaataccc aaaacattca
     1441 aatcaccgac gaagccgcac aaatccggct gacaggaaaa acagcggcac aaaccaaagc
     1501 cgatattgat acaaacgtaa ccacagacac cgccgaacga cattcgggca gcctgaaaaa
     1561 cgtatttgac aaagatagag tgcaaagtga actggattta caaagaaccg tcagccaaga
     1621 ttttagtaaa aatgttcaac aagccaatac cgagattaac caacatttag acaaactcaa
     1681 agcagacaaa gaagcagccg aaacagcagc agccgaggca ttagccaatg gcgatatgga
     1741 aactgccaaa cacaaagccc atgaagctca agatgcggca gcaaaagcag ataattggca
     1801 acaaggcaaa gtcattctca acatgttagc ctcaggttta gctgcgccga cccaaagcgg
     1861 agcgggcatc gctgcggcta ccgcatcgcc agccgtatcg tatgcgattg gacagcactt
     1921 taaagattta gccggtcaaa acgcgaatgg caaactaacc gccagtcaag aaaccgctca
     1981 cgttcttgcc cacgcggtat taggagcagc ggttgcagca gcaggaggca acaatgcccc
     2041 ggcgggagca ttgagtgcgg gcgggtcgga agcggctgcg ccttacatca gcaaatggtt
     2101 atatggcaaa gaaaaaggaa gtgacttaac ggcggaagag aaagagactg agacctttgc
     2161 aaaattcccc aaaatcccct aaattcccac catgacattt aggggatttt ccatgagcac
     2221 cttcttccag caaaccgccc aagccatgat tgccagacac atc
//
LOCUS       DAXHPV010000216         2260 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.216, whole genome shotgun sequence.
ACCESSION   DAXHPV010000216 DAXHPV010000000
VERSION     DAXHPV010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2260
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.216"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            683..1792
                     /gene="fic"
                     /locus_tag="ACFM6C_001986"
     CDS             683..1792
                     /gene="fic"
                     /locus_tag="ACFM6C_001986"
                     /EC_number="2.7.7.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0070733 - AMPylase activity [Evidence
                     IEA];
                     GO_process: GO:0018117 - protein adenylylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein adenylyltransferase Fic"
                     /protein_id="HFC6159374.1"
                     /translation="MSNWKPDIPYNDLPPLPPKQDIESKTILKRCIAARASLARLKQA
                     AELIPNQAMLINTLPVMEARASSEIENIVTTTDKLFQSLQMDTERQDPATKEALQYRT
                     ALFAGYESLTSRPLCTQTAIMVCNAIKHPYEMAIRKTGGTALKGGNSGNVVYTPPEGE
                     ETIRGKLANWERFIHESGDLDPLIIMAAAHYQFEAIHPFTDGNGRTGRILNSLLLIEK
                     GLLDLPILYLSRYIIENRADYYRLLLGVTERQDWESWIIYILDGVADTADWTVSKIDA
                     IRRLFEQTRQHIRTHAQGIYTHELVNLLFEQPYTRIANLEAAGIAKRQTASKYLKELS
                     DIGVLQEIVIGRDKLFIHPRLMELLRGEGNSFTSF"
BASE COUNT          668 a          527 c          486 g          579 t
ORIGIN      
        1 cacgaaagtg ggaatccggc tcgttcggtt tcgcttgttt taagtttcgg gtaacttcca
       61 cttcgtcatt cccgcgcagg caggaatcca gtgcgttgag tttcagctat ttagaataaa
      121 ttttgaaact ctaatcgcgt cattcccaca aaagtgggaa tctagttttt tgagtttcag
      181 tcattcccga taaattgcct tagcattgaa tgtctagatt cccgccttcg cgggaatgac
      241 gggatttgag gtttctgttt ttgattttct gttttcgtag gaatgacggt ttaaaagtta
      301 cccgaaacct caaaaaaaag gctgtgtttt aatatagtgt tgatagacgt acttggctgc
      361 catgtattca atcgtggaaa tctatatctt cgtcctcgcc gaaatagtct atgcccgata
      421 tacaattttg atacacaaac ttggaaatat gggtatcgtc gccggagcga tagaatgcgg
      481 acagttatat atatatacgg tttttttagg gaagcgggca gatgaagggc ggattttgaa
      541 ttaaccccat gcaaattgac ttttgcgggc ggttttacct cccatatatt tacaaaagcc
      601 aaatttttaa acatatatcc ttgatatata cacggcgtaa acatatactg gaaacatctt
      661 taaatttttt gaaattttaa atatgagcaa ctggaaaccc gatattccct ataacgattt
      721 accacccctg ccgccaaaac aggatattga aagcaaaacc atcctgaaac gttgtatagc
      781 cgcccgtgca tcccttgccc gtttaaagca ggcggcagaa ttgataccga atcaagccat
      841 gctgattaac acccttcctg ttatggaagc ccgtgcaagt tcggaaattg aaaacatcgt
      901 aaccacaacg gacaagctgt ttcaatccct gcaaatggat acggaacggc aagaccctgc
      961 cacgaaagaa gccctgcaat accgcaccgc cctgtttgca ggctatgaat cactgacgag
     1021 ccgcccttta tgcacacaaa ccgccatcat ggtctgcaac gccatcaagc acccctacga
     1081 aatggccatc cgcaaaacag gcggcacagc cctaaaagga ggcaacagcg gaaatgttgt
     1141 ctataccccg cccgaaggag aagaaaccat acgcggcaag ctggcaaatt gggagcggtt
     1201 tattcacgaa agcggcgatt tagacccgct tatcatcatg gcggcggcac attaccaatt
     1261 tgaagccatc catccgttta cggacggcaa cgggcggacg gggcgcatat tgaacagcct
     1321 gctattgatt gaaaaagggc ttttggattt gcctattttg tatttgagcc gctacatcat
     1381 cgaaaacagg gcggactatt accgcctgct tttaggcgta accgaacggc aggactggga
     1441 aagctggata atctacatct tagacggcgt agctgacacc gccgattgga cggtatcgaa
     1501 aatagatgcg atacgccgcc tgttcgagca gacacggcaa cacatacgga cacacgcaca
     1561 aggaatctac acgcacgaac tggtaaatct tctgtttgag cagccatata cacgcattgc
     1621 caacctagaa gcggcaggga tagccaaacg gcagacggcc tctaagtacc tgaaagagct
     1681 ttcagacata ggtgtgctgc aagaaatcgt catcggcagg gacaaactat tcattcatcc
     1741 gcgcctaatg gaactattgc ggggagaggg caacagcttt acttcattct aaccccctct
     1801 tccccccccc acatgactaa cacgaaacag ggattttgac acccgaaccg agaccccttg
     1861 tatttccccc gcgaaaagcc ggcatccgcc cgcgtatcat gggagcaaca aaacccctgc
     1921 ctaaaatttt gacttgtgca aattgggggt atatttgggg gtatattgaa aaatggctaa
     1981 aataaaatgt ttaataaaca aaatgttgaa acttaatttc gatagagcat ctgcatatcg
     2041 tattgaggcg ttcatggaat ttgagaaagc tatttttaaa taagaaaagg taactattaa
     2101 atagctacct ttctaaaatt aaatatcaac acatcgttaa aacacagcct ttatttttaa
     2161 caaagttgca aatgtttttt tattttttta gggaatacac caaaatcccg tcatttccgc
     2221 gcagtcgtga atccgaacgc gtccgcatgg aaacctatat
//
LOCUS       DAXHPV010000217         2208 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.217, whole genome shotgun sequence.
ACCESSION   DAXHPV010000217 DAXHPV010000000
VERSION     DAXHPV010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2208)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2208)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2208
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.217"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            136..2016
                     /locus_tag="ACFM6C_001987"
     CDS             136..2016
                     /locus_tag="ACFM6C_001987"
                     /EC_number="3.1.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0016896 - RNA exonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease catalytic domain-containing
                     protein"
                     /protein_id="HFC6159375.1"
                     /translation="MNIFYEESGQFKIAAIIQKNDATYQVDTPHGKRTKVKANNVFTE
                     FDGDMAAFLENAQAQAADIDTDLLWEVCGEEEFTAEAIAEEYYGHAPTKTELAATLIA
                     LYAAPMYFYKKAKGVFKAAPEETLKQALAAIERKKQQDAQIDAWAEALKRGEMPSEIA
                     ADLKTILHAPDKQLLTYKAFTKAADALKTSAYELAKKTGGITSIPQYLQDGFEIKYFP
                     KGTSFPDLPLPEMPDLPKADVTAFSIDDESTTEVDDALSLTDLGNGTKRVGIHIAAPS
                     LAVKPGDKMEKNIMERLSTVYFPGGKITMLPENWIAAFSLDAGAYRPAVSIYFDVDSE
                     FNTGEPTCKIEAVSIAENLRIQTIEPHFNAETGLDEAGEMMFAHHQDLIWFYQFAIAL
                     QKARGKYEPDRAPQYDYSIELDEEGKVSVVRRERGSPIDTLVSEMMILANSTWAQMLH
                     DNDLPGLFRVQPTGKVRMSTKSEPHIGMGVQHYGWFTSPLRRAADYINQKQLISLIDD
                     SAEPLYQNSDAELFAALRDFDAAYTAYADFQRQMEAYWSLVYLQQQGISELTATILKE
                     DLVRIEGLPLVTRATGIPFDALPKSQALFKITELDAEKQFVSLNYIKAVAPAGKTAGN
                     AV"
BASE COUNT          597 a          676 c          515 g          420 t
ORIGIN      
        1 gtactggttt ttgttaatcc actataacgc aagcaccgca aagacgcgcc aaccctctcc
       61 caaccttttt tcagacggca ttttcggtaa tctgctaaaa tcgcccgctt gagtttccac
      121 agaaaaatcc gaaaaatgaa tattttttac gaagagtccg gccaattcaa aatcgccgcc
      181 atcatccaaa aaaacgatgc cacctaccaa gtcgataccc cacacggcaa acgcaccaaa
      241 gtgaaggcga acaacgtctt taccgagttc gacggcgata tggcggcgtt tttggagaac
      301 gcgcaggcgc aggcggcgga catcgacacc gatttattgt gggaggtatg cggcgaagaa
      361 gaatttaccg ccgaagccat cgccgaagaa tattacggac acgcgccgac caaaaccgag
      421 ctggcggcga ctttgattgc actttacgcc gcgccgatgt atttctacaa aaaagccaaa
      481 ggcgtgttca aagccgcgcc cgaagaaacc ttaaaacaag cgcttgccgc catcgaacgc
      541 aaaaaacagc aagacgcgca aatcgacgct tgggcggaag ccttaaaacg cggcgagatg
      601 ccgtctgaaa tcgcggcgga tttgaaaacc atcttacacg cacccgacaa gcagttgctg
      661 acctacaaag cctttaccaa agctgccgac gcgctgaaaa cttccgccta cgaattggcg
      721 aaaaaaacag gcggcattac gtccattccc caatacctgc aagacggttt tgaaatcaaa
      781 tacttcccca aaggaacaag cttccccgac cttccgcttc ctgaaatgcc cgacttgccc
      841 aaggccgacg ttaccgcctt ttccattgac gacgaatcga ccaccgaagt ggacgatgcc
      901 ttgagcctga ccgacttggg caacggcacg aaacgcgtcg gcatccacat cgccgcgccg
      961 tcacttgccg ttaaaccggg cgacaaaatg gaaaaaaaca tcatggaacg cctgagtacg
     1021 gtctatttcc ccggcggcaa aatcaccatg ctgcccgaaa actggatagc cgcgttcagc
     1081 cttgatgcgg gcgcgtaccg tcccgccgtc agcatttatt ttgatgtgga cagcgagttc
     1141 aacaccggcg aaccgacctg caaaatcgaa gccgtcagca tcgccgaaaa cctacgcatc
     1201 caaaccatcg agccgcattt caacgccgaa accggcttgg acgaagcggg cgaaatgatg
     1261 ttcgcccacc atcaagactt gatttggttc tatcaattcg ccatcgccct gcaaaaagca
     1321 cgcggcaaat acgaacccga ccgcgcgccg caatacgatt acagcatcga attggatgag
     1381 gaaggcaagg tatccgtcgt ccgccgcgaa cgcggttcgc ccatcgatac gctggtcagc
     1441 gagatgatga ttcttgccaa cagcacttgg gcacaaatgc tccatgacaa cgacctgccc
     1501 ggcctcttcc gcgtccaacc caccggaaaa gtgcgcatga gcaccaaatc cgagccgcat
     1561 atcggcatgg gcgtgcagca ttacggctgg ttcacttcgc cgctgcgccg cgccgccgac
     1621 tacatcaacc aaaagcagct gatcagcctg atcgacgact ccgccgagcc gctgtatcag
     1681 aacagcgatg ccgaactctt cgccgcgctg cgcgactttg atgccgccta taccgcctac
     1741 gccgacttcc aacgccaaat ggaagcctac tggagtctcg tctatctgca acagcaaggc
     1801 atcagcgaac tgacggcgac gattctgaaa gaagacctcg tccgcatcga aggtctgccg
     1861 ctagtaacac gcgcaaccgg tattccgttt gacgcgctgc ccaaatcaca ggcattgttc
     1921 aaaatcaccg aattagatgc cgagaagcag tttgtctcgc tcaactacat caaggcagtc
     1981 gcacccgcag gcaaaacggc aggcaatgcc gtctgaagcc gtgtgcggca aattcccacg
     2041 acccaaaatc ccgtcattcc cacaatcggg aatccggttt tttgggtttc cgttgttttt
     2101 gcgcttcagt gaacttccaa accgccattc ccgataaata cccgcaatct aaaatcccgt
     2161 cattcccacg cagatgggaa tctaggttta tccgcacaga aactgata
//
LOCUS       DAXHPV010000218         2205 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.218, whole genome shotgun sequence.
ACCESSION   DAXHPV010000218 DAXHPV010000000
VERSION     DAXHPV010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2205)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2205)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2205
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.218"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            373..885
                     /locus_tag="ACFM6C_001988"
     CDS             373..885
                     /locus_tag="ACFM6C_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HFC6159376.1"
                     /translation="MKNFNGKLILIGLMGAGKTTLGRQMAQRLDYRFYDSDHEIAVAA
                     GVPIPTIFEMEGEQGFRSRETAILKKLVILPHIVLSTGGGAVLKEENRALIRKSGTVV
                     YLHAPPETLLERTRCDNSRPLLQVADPLAKLRELYAARDPVYRQTADFTVESANCRET
                     VQTLLKRLSR"
     gene            965..2044
                     /gene="aroB"
                     /locus_tag="ACFM6C_001989"
     CDS             965..2044
                     /gene="aroB"
                     /locus_tag="ACFM6C_001989"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HFC6159377.1"
                     /translation="MKTLTVHTPSHSYPIFIGNGLLPQAGSLLKPHLGKRAAIITNET
                     VAPLYLGTLQTALDAAGVSHFSIILPDGEVHKNWQTLNLIFDGLMQNRAERKTTLIAL
                     GGGVIGDMVGFAAATYQRGAPFVQIPTTLLSQVDSSVGGKTAINHPLGKNMIGAFYQP
                     QAVLADLDTLHTLPVRELSAGMAEVIKYGALGDIGFFEWLEQNISGLMTLDREKLAQA
                     VYRCCQMKADIVAQDETEQGIRAWLNLGHTFGHAIETEMGYGTWLHGEAIAAGCVLAA
                     RLSEQLGKTSAADTARLAALLEAAGLPSAPPVFAFEKWLEHMSHDKKVSGGIMRFIGL
                     NRLGEANITEITDTDILRRTLQPYL"
BASE COUNT          535 a          684 c          534 g          452 t
ORIGIN      
        1 ttcagcacct tagagaatcg ttctctttga gctaaggcga ggcaacgctg tactggtttt
       61 tgttaatcca ctatagtatt gataaacata ttatcttcaa tatattcaat tggataattg
      121 tttacctaag caaagataat tgccttttcc tgacaaataa gtgaaatcaa cggattgtca
      181 aaacacagcc tgaaataaaa aacctccctg atttctttta tttttcctta aaatcagaaa
      241 ggttcgggat ggtcgggtta tttttccaaa cgtaccgctg ccctgccgat ttcgtataaa
      301 attccgccgt aacccgacaa gcccgaaccc tgtcgccccg aaaggcgggg tgtcaaacat
      361 taaggaattg tgatgaaaaa ctttaacggc aaactcatcc tcatcggact gatgggcgcg
      421 ggcaaaacca cgctgggccg gcaaatggcg cagcggctgg attaccgttt ttacgacagc
      481 gatcacgaaa tcgccgtagc cgccggcgtt cccatcccca ccatatttga aatggaaggc
      541 gaacagggat tccgttcgcg cgaaaccgcc atactcaaaa agctggttat cctgccccat
      601 atcgtcctgt ccaccggcgg cggcgcggtg ttaaaagaag aaaaccgcgc ccttatccgc
      661 aaaagcggca cggtcgtcta tctgcacgcc ccgcccgaaa ccctgctcga acgcacgcgc
      721 tgcgacaaca gccgtccttt gctgcaagtt gccgatcctt tggcgaaatt acgtgaactc
      781 tacgccgcac gcgaccccgt ttaccgccaa accgccgact ttaccgtaga atcggcaaac
      841 tgccgggaaa ccgtgcaaac cctgctcaaa cgcttatccc gataaaccgg catatgcgcc
      901 gcgcccagaa aaccaagccg cgccccgccc ggcgggccgg cggttcaaac tttaaggaac
      961 aacaatgaaa acactgaccg tacacacccc gtcccacagc taccccatct ttatcggcaa
     1021 cgggctgctg ccgcaggcag gcagcctgct caaaccgcat ttgggcaaac gcgccgccat
     1081 catcaccaac gaaaccgtcg ccccgctcta cctcggcacg cttcagacgg cattggatgc
     1141 ggcaggcgta tcccatttca gcatcatcct gcccgacggc gaggtgcaca aaaactggca
     1201 gacgctcaac ctcatctttg acgggctgat gcaaaaccgc gccgaacgca aaaccacatt
     1261 aatcgcactg ggcggcggcg tgatcggcga catggtcggc tttgccgctg ccacctacca
     1321 gcgcggcgca ccgttcgttc aaataccgac cacactgttg agtcaagtcg actcatcggt
     1381 gggcggcaaa accgccatca accacccgct cggcaaaaat atgatcggcg cattctacca
     1441 gccgcaggcg gtgcttgccg acttggacac gctgcacacc ctgcccgtcc gcgaattgtc
     1501 cgccggtatg gcggaagtca tcaaatacgg cgcgctcggc gacatcggtt ttttcgaatg
     1561 gctcgaacaa aacatatccg gactgatgac gctcgatcgg gaaaaactcg cccaagccgt
     1621 gtaccgctgc tgccaaatga aggcagacat cgtcgcccaa gacgaaaccg aacagggcat
     1681 acgcgcatgg ctcaacctcg gacacacctt cggacacgcc attgaaaccg agatgggtta
     1741 cggcacttgg ctgcatggag aagccatcgc cgccggctgc gtgttggcgg cgcgtttgtc
     1801 cgaacaactg ggcaaaacct ccgccgcaga taccgcgcgg ctcgccgccc tgctcgaagc
     1861 cgctggactg ccgtccgcac cgcccgtgtt tgcctttgaa aaatggctcg aacatatgag
     1921 ccacgataaa aaagtcagcg gcggcatcat gcgctttatc ggtctgaacc ggctgggcga
     1981 agccaacatc accgaaatta ccgacacgga catcctccgc cgcaccctgc aaccgtatct
     2041 ctgatttcct ctgccgatgt gctgccgcgc gggtttgacg cacgatgatg attttccatc
     2101 atctttctcc gtaaaagcgg gaatccggtc cgttcggttt cggtcgtttc cgataaattc
     2161 ctgctgcttt tcatttctag attcccactt tcgtgggaat gacgg
//
LOCUS       DAXHPV010000219         2193 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.219, whole genome shotgun sequence.
ACCESSION   DAXHPV010000219 DAXHPV010000000
VERSION     DAXHPV010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2193)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2193)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2193
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.219"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            30..515
                     /locus_tag="ACFM6C_001990"
     CDS             30..515
                     /locus_tag="ACFM6C_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159378.1"
                     /translation="MFVNEKYPYAALFAGLVFLTLPFALAVHDAFALAFGRAGLLVSV
                     SAGGFGRRGGWDGTVWFVFGVFAFLNLVVSAGLTKLAYKKMMRRHSRYALFLSGVAAC
                     AAAAVAWIFELLLGSAALGGLRGEAVLEYAFAVWLVAMLTLPKRLTRAPVQPVVFHRK
                     K"
     gene            612..1235
                     /gene="rsmG"
                     /locus_tag="ACFM6C_001991"
     CDS             612..1235
                     /gene="rsmG"
                     /locus_tag="ACFM6C_001991"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HFC6159379.1"
                     /translation="MERKERLQSGIAALGLDISAAAQDRLLAYVDLLKKWNKTYNLTA
                     LRDEEKMIVHHLLDSLTLLPHIEGVQTMLDVGSGGGQPGIPAAVCRPDVQITLLDANT
                     KKTAFLQQAVIELGLDNVRVVSGRVEAVSDVRADVVTSRAFAELADFVSWTVHLLKDG
                     GYWAAMKGVYPQEEIGRLPQDVCVEKVQRLDVPGLDAERHIVILSKR"
     gene            1334..2107
                     /locus_tag="ACFM6C_001992"
     CDS             1334..2107
                     /locus_tag="ACFM6C_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HFC6159380.1"
                     /translation="MSANILAIANQKGGVGKTTTTVNLAASLASRGKRVLVVDLDPQG
                     NATTGSGIDKAGLQSGVYQVLLGDADVKSAAVRSKEGGYAVLGANRALAGAEIELVQE
                     IAREVRLKNALKAVAEDYDFILIDCPPSLTLLTLNGLVAAGGVIVPMLCEYYALEGIS
                     DLIATVRKIRQAVNPDLDITGIVRTMYDSRSRLVAEVSEQLRSHFGDLLFETAIPRNI
                     RLAEAPSHGMPVMAYDAQAKGAKAYLALADELAARVSGK"
BASE COUNT          423 a          502 c          755 g          513 t
ORIGIN      
        1 gcggtctgtt tcggaagagg gggacggcga tgtttgtgaa cgagaaatat ccttatgcgg
       61 ctctgtttgc ggggctggtg tttttgacgt tgccgtttgc gttggcggtg catgatgcct
      121 ttgcgcttgc gttcggacgg gcagggctgc tggtgtcggt gtcggccggc ggattcggcc
      181 ggcgtggtgg ttgggacggc actgtttggt ttgtgttcgg tgtgtttgcg tttttgaacc
      241 tggtcgtgtc ggcaggcctg acgaagctgg cgtacaaaaa gatgatgcgg cggcattcgc
      301 gttacgcgct gtttctgtcg ggcgtggcgg cttgcgcggc ggcggcggtg gcttggattt
      361 tcgagctgtt gttgggcagt gccgccttgg gcgggctgcg cggggaggcg gtgttggaat
      421 atgcgtttgc cgtgtggctg gtggcgatgc tgacgctgcc caaacgcttg acgcgcgcgc
      481 cagtgcagcc ggtagtgttt cacaggaaaa aataggttgg aacgtgaaat gccgtctgaa
      541 acgccgatac gcggtttcag acggcatgtt tttccgttaa cattacgcct gaacatggac
      601 aggataggga tatggaacgc aaagaacgcc tgcaatcggg catcgccgca ttgggtttgg
      661 atatttccgc agcggcacag gacaggcttt tggcctatgt ggatttgttg aaaaagtgga
      721 acaaaaccta caatctgacc gccctgcgcg acgaggaaaa aatgattgtc catcatcttt
      781 tggacagcct gacgctgctg ccccatatcg agggtgtgca aacgatgctg gatgtcggtt
      841 cgggcggcgg tcagcccggc attccggcgg cggtgtgccg tccggatgtg caaataaccc
      901 ttttggatgc gaatacgaag aaaacggctt ttttacagca ggcggttatc gagttggggt
      961 tggacaatgt gcgcgtggta tccggacgcg tggaggcggt ttcggacgtg cgtgccgatg
     1021 tggttaccag ccgtgcgttt gcagaactgg cggattttgt gtcgtggacg gtgcatctgt
     1081 tgaaagacgg cggctactgg gcggcgatga agggcgtgta tccgcaggaa gaaatcggcc
     1141 gcctgccgca ggatgtgtgc gttgaaaaag tccaaaggct cgacgtgccg ggcttggatg
     1201 cggaacgcca tatcgtcatc ctgagcaagc gttgagcgta cttcagacgg catgaatacc
     1261 ttttttgtgc ggataaaggt aaaattccgc actgtttttc ttttttcaac atcagacggg
     1321 acacgggcgg gacatgagtg cgaacatcct tgccatcgcc aatcagaagg gcggtgtggg
     1381 caaaacgacg acgacggtaa atttggcggc ttcgctggca tcgcgcggca aacgcgtgct
     1441 ggtggtcgat ttggatccgc agggcaatgc gacgacaggc agcggcatcg acaaggcggg
     1501 tttgcagtcc ggcgtttatc aggtcttatt gggcgatgcg gacgtgaaat cggcggcggt
     1561 acgcagcaaa gagggcggat acgctgtgtt gggtgcgaac cgcgcgctgg ccggcgcgga
     1621 aatcgagctg gtgcaggaaa tcgcccggga agtgcgtttg aaaaacgcgc tcaaggcagt
     1681 ggcggaagat tacgacttta tcctgatcga ctgtccgcct tcgctgacgc tgttgacgct
     1741 taacggcttg gtggcggcgg gcggcgtgat tgtgccgatg ttgtgcgaat attacgcgct
     1801 ggaagggatt tccgatttga ttgcgaccgt gcgcaaaatc cgtcaggcgg tcaatcccga
     1861 tttggacatc acgggcatcg tgcgcacgat gtacgacagc cgcagcaggc tggttgccga
     1921 agtcagcgaa cagttgcgca gccatttcgg ggatttgctt tttgaaaccg ccatcccgcg
     1981 caatatccgc cttgcagaag cgccgagcca cggtatgccg gttatggctt atgatgcgca
     2041 ggcaaagggt gccaaggcgt atcttgcctt ggcggacgag ctggcggcga gggtgtcggg
     2101 gaaataggtc aatccaaatc gggctgcccg tgcctttatg ctgtttggcc gggtgcgtta
     2161 atatggcgga ttaaaataaa aatacttata tcg
//
LOCUS       DAXHPV010000220         2041 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.220, whole genome shotgun sequence.
ACCESSION   DAXHPV010000220 DAXHPV010000000
VERSION     DAXHPV010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2041)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2041)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2041
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.220"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..815)
                     /gene="cysW"
                     /locus_tag="ACFM6C_001993"
     CDS             complement(<1..815)
                     /gene="cysW"
                     /locus_tag="ACFM6C_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter permease subunit CysW"
                     /protein_id="HFC6159381.1"
                     /translation="MKPYSANPNLTEPRWLRVLLTAVALGFLLLMLVVPLVAVFYEAL
                     KGGWDLYLKSLNDPEAWSAIKLTLITALIVVPVNAVLGVAMAWLLTRFDFRGKQLLTT
                     LLDLPFSVSPVVAGLMFVLLFGAHTALGGWLEAQGIQIIFAIPGIILATLFVTFPFVA
                     REIIPLMQAQGDSEEQAALILGASGWQMFWRVTLPNIKWALLYGIILTNARAMGEFGA
                     VSVVSGHIRGETNTVPLLVEIFYNEYNFTGAFALSGVLALLALATLAVQNIIT"
     gene            complement(1067..1903)
                     /gene="cysT"
                     /locus_tag="ACFM6C_001994"
     CDS             complement(1067..1903)
                     /gene="cysT"
                     /locus_tag="ACFM6C_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter permease subunit CysT"
                     /protein_id="HFC6159382.1"
                     /translation="MLALKTPGVLPGFKLSLGLTVLCLSLLVVLPFAMMAAKAAEIGW
                     SGFWNTITEPNVLAAVWLSLRMSFYAMLTNVVFGTLVAWVLVRYEFPGKGLANALVDL
                     PFALPTAVTGIALATLYAPNGWIGRFFEPLGIKIAFTPVGIWIALVVVSLPFIVRAVQ
                     PVLEELSGEYEEAAATLGANRFTTFRRVLLPEITPALLTGAGMMFARATGEYGSVIFI
                     AGNIPMVSEILPLIITGKLEQFDVQGASAVALFMLLVSFVILFALNVMQWALGRRSGA
                     KG"
BASE COUNT          540 a          577 c          552 g          372 t
ORIGIN      
        1 ttggtgatga tgttctgcac cgccagcgtc gccagtgcta aaagtgccaa tacgccggag
       61 agggcgaatg cgccggtaaa gttgtattcg ttgtagaaga tttcgaccaa aagcgggacg
      121 gtgttggttt cgccgcgtat gtgtcccgat accacgctga ccgcgccgaa ttcgcccatc
      181 gcgcgggcgt tggtgaggat gatgccgtag agtaacgccc atttgatgtt gggcagggta
      241 acgcgccaaa acatctgcca gccgcttgcg ccgagtatca atgccgcctg ttcttcgctg
      301 tcgccctgag cctgcatcag cgggatgatt tcgcgtgcga caaaggggaa agtaacgaac
      361 agcgtcgcca gaataatgcc ggggatggcg aagataatct gtatgccttg cgcttcgagc
      421 cagccaccca atgccgtgtg cgcgccgaac aataagacga acattaaacc ggccaccacg
      481 ggcgatacgg aaaacggcaa atcgagcagg gtggtcagca actgcttgcc gcgaaaatca
      541 aaacgggtca gcagccacgc catcgccacg cccaagacgg cattgacggg aacgacaatc
      601 agcgcggtaa tcagcgtcaa tttgatggca gaccacgctt cgggatcgtt taaggatttc
      661 aggtacaaat cccaaccgcc ttttaaggct tcgtaaaaca cggcgacgag cggcacgacc
      721 agcatcagca gcagaaagcc cagcgcgaca gcggtcagca gcacgcgcag ccagcgcggt
      781 tcggtcaggt tgggattggc ggaatagggt ttcatggcgg tggtgttccc cggttggttt
      841 taaaatgttt ggaggtcgtc tgaaaaaccg ttttttgtgg ggcggattcg ttttcagaca
      901 accttttatt gattaaggga ataaaaacgt ctagctaccg tcattcccgc gcaggcggga
      961 atccaccgca gggcaacagg aaaacagaaa ataaataagg cagctgaaat tcaccaatgg
     1021 attcctgcct gcgcgggaat gacggtaaca ggtatttcag acgacctcaa cccttcgcgc
     1081 ccgaacgcct gcccaacgcc cactgcatca cgttcagcgc aaacagaatc acaaacgaaa
     1141 ccagcagcat aaacaacgcc accgccgacg cgccctgcac gtcgaactgt tccagcttgc
     1201 ccgtaataat cagcggcagg atttcagaaa ccatcggaat attgcccgcg ataaaaatca
     1261 ccgagccgta ttcccccgtt gcccgcgcaa acatcattcc cgcgccggtc aagagtgccg
     1321 gtgtgatttc aggcagcagc acgcggcgga acgtcgtaaa gcggtttgcg cccaaagtcg
     1381 ccgccgcttc ctcatattcg cccgataatt cctccaacac cggctgcacg gcgcggacga
     1441 taaagggcag gctgacgacg accagcgcaa tccaaatgcc gacgggcgta aacgcgattt
     1501 tgatgcccaa aggctcgaaa aaacggccta tccaaccgtt gggcgcatac agggtcgcca
     1561 acgcgatacc cgtaaccgcc gtcggcagcg caaatggcaa atcgaccagc gcgttcgcca
     1621 gacccttgcc cgggaattca taacgcacca atacccacgc caccagcgtg ccgaacacga
     1681 cattggtcag catcgcataa aacgacatcc gcaaactcag ccagacggcc gccaagacat
     1741 tgggttcggt aatcgtgttc caaaatccgc tccagccgat ttccgccgcc ttcgccgcca
     1801 tcatcgcaaa cggcaagacc acaagcagcg acaggcacaa tacggtcaga ccaaggctga
     1861 gtttgaagcc gggcagtacg ccgggcgttt tgagcgctaa cataaaacaa tgctgaaaat
     1921 aaggaaaagg aaagactact ttaacgatgc cgtccgaaaa acggaaagaa tggaaagttt
     1981 ggtgcaaaga cgaatttgtt ataaagcggt tggcagtttc tcaagcgggc gcgatgtttt
     2041 a
//
LOCUS       DAXHPV010000221         2006 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.221, whole genome shotgun sequence.
ACCESSION   DAXHPV010000221 DAXHPV010000000
VERSION     DAXHPV010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2006)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2006)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2006
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.221"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            299..1756
                     /locus_tag="ACFM6C_001995"
     CDS             299..1756
                     /locus_tag="ACFM6C_001995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012779527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015333 - peptide:proton symporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide:H+ symporter"
                     /protein_id="HFC6159383.1"
                     /translation="MSRHPAPTGEKAFFGHPFQLSTLFHIELWERFSFYGMQGILLIY
                     LYYTADKGGLGIDKTLAGGIVGAYSGSVYLSTILGAWFADRVWGAEKTLFLSGIVVML
                     GHIVLAAAPGLYGLLIGLIFIALGSGGVKSTASSMVGALYEQDEMRPLRDAGFSIFYI
                     AINIGGFLGPLLTGLLQENIGFHYGFGAAAVGMAFGLWRYSLGRKNLPHPTVPHPLSK
                     GQGKTAAAVGIALIAALATAIKTGLVNLDNFSGILLSTVILAVIAYFARLLTNPRVSS
                     DNKRHIIAYIPLFLTICMFWAVWFQIYTVATVYFDETVNRTIGSFTVPVAWKDSMQSL
                     WVILFSGLMAAMWTKMGRKQPKTPLKFAMAVFVTGASFLGFVPFISAGTPMPIAVFAL
                     IVLAITIGELMISPIALSISTKIAPPLFKTQMVALNFLAFSLGFTLGGVLFEKGYQAG
                     DEIGFYRLLFYIGAATGFLLLLLVPKLNKMLEGTD"
BASE COUNT          453 a          597 c          462 g          494 t
ORIGIN      
        1 tgcgcccttc ggcgtggcgg atatataagg aagtgatttt ccatctaagt aaaaaccgcc
       61 ctatcggata agcccttaac agaaaaggct ttacccgcgc cgtatcggaa cacgtactct
      121 aaaatacaat ccattgaatt gaaaaaaata taaaaacatc cgcccgcgaa aaacggcagc
      181 gcgtcgtttg acaaagaatg aaaatatcgg ttaaaaaccg attttcatac aaaaaacacc
      241 gctgccgtcc gcatccgttt cagacggtat tgagagaaaa tcttttagga gaacctttat
      301 gtcccgacat cccgccccca ccggagaaaa agcattcttc ggccacccct tccagctttc
      361 caccctcttc catatcgaat tgtgggaacg tttttcattt tacggaatgc agggcatcct
      421 gctgatttac ctctactaca ccgccgacaa aggcggcttg ggcatagaca aaaccctcgc
      481 cggcggcatt gtcggcgcat acagcggcag cgtgtacctg tccaccattt tgggggcgtg
      541 gtttgccgac cgcgtatggg gtgcggaaaa aaccctcttc ctctcgggca tcgtcgtgat
      601 gctcggacac atcgtccttg ccgcagcacc gggcctgtac ggccttttaa tcgggctgat
      661 attcatcgca ttgggcagcg gcggcgtgaa atctacggcc agttctatgg tgggcgcatt
      721 atacgaacag gacgaaatgc gcccgctgcg cgatgcggga ttttccattt tctacatcgc
      781 catcaatatc ggcggcttcc taggcccgct gctgaccggc ctgctgcagg aaaacatcgg
      841 tttccattat ggtttcggtg cggcggcggt cggtatggca ttcggcttgt ggcgttattc
      901 cctgggacgt aaaaacctgc cccaccccac cgtcccccat ccgctttcaa aaggacaggg
      961 caaaactgcg gccgccgtcg gcatcgccct catcgccgca cttgcaaccg ccatcaaaac
     1021 cgggcttgtc aacctcgaca atttctccgg catcctctta tctaccgtca tccttgccgt
     1081 catcgcctat ttcgcccgcc tgctgactaa tccccgcgtc agttccgaca acaaacggca
     1141 catcatcgcc tacatcccgc ttttcctgac catctgtatg ttttgggcgg tctggtttca
     1201 gatttacacc gtggcaaccg tctatttcga cgaaaccgtc aaccgcacca tcggttcgtt
     1261 taccgtgccc gtcgcctgga aagattctat gcaaagcctg tgggtcatcc tgttttccgg
     1321 actgatggcg gcaatgtgga caaaaatggg gcgcaaacag cccaaaaccc cgctgaaatt
     1381 cgctatggcg gtatttgtta ccggcgcgtc gtttttggga ttcgtcccct ttatttccgc
     1441 cggcacgccg atgcctattg cggttttcgc actgattgtc cttgccatca cgataggcga
     1501 actgatgatt tccccgattg cactgtccat ctccaccaaa atcgcaccgc ctttattcaa
     1561 aacccaaatg gtcgccctta atttccttgc cttttcatta ggcttcactt tgggcggcgt
     1621 attgtttgaa aaaggctatc aggccggcga cgaaatcggc ttctaccggc tgctgttcta
     1681 catcggcgca gccacaggct tcctgctgct cctgctcgtc cccaaattga acaaaatgct
     1741 cgaaggcaca gactaagtcc taccccgatg cgccgatgcc gtctgaaccc ttcagacggc
     1801 atttttcccg cataatgaaa ccaaaccgtt tccacccgac aggacaggct ccccccaacc
     1861 ggaaggcagc ctgccgattg tcatttaaat atctgactga ttccgtctgt ttgcaaggga
     1921 aatagccgtt tatttccgct tgggcggaaa ccggttctat tgagtaaaag gcattttatc
     1981 cgactaaatt agtgctgcat caacgg
//
LOCUS       DAXHPV010000222         1862 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.222, whole genome shotgun sequence.
ACCESSION   DAXHPV010000222 DAXHPV010000000
VERSION     DAXHPV010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1862)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1862)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1862
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.222"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(195..1361)
                     /locus_tag="ACFM6C_001996"
     CDS             complement(195..1361)
                     /locus_tag="ACFM6C_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HFC6159384.1"
                     /translation="MRKKLTALVLSALPLAAVADVSLYGEIKAGVEGRNIQLQLTEQP
                     SKAQGQTNNQVKVTKAKSRIRTKISDFGSFIGFKGSEDLGEGLKAVWQLEQDVSVAGG
                     GATQWGNRESFIGLAGEFGTLRAGRVANQFDDASQAIDPWDSNNDVASQLGIFKRHDD
                     MPVSVRYDSPDFSGFSGSVQFVPAQNSKSAYKPAYVDEKKMVHAAVVGKPGSDVYYAG
                     LNYKNGGFAGSYAFKYARHANVGRDAFELFLLGSTSDEAKGTDPLKNHQVHRLTGGYE
                     EGGLNLALAAQLDLSENGDKAKTKNSTTEIAATASYRFGNAVPRISYAHGFDLIERGK
                     KGENTSYDQIIAGVDYDFSKRTSAIVSGAWLKRNTGIGNYTQINAASVGLRHKF"
BASE COUNT          465 a          487 c          425 g          485 t
ORIGIN      
        1 tatatgtgca aaccaagcca aaaatgcgaa ataccgtctg aaaatctttc agacggtatt
       61 tgctgtcttt attgccgttt ttcttccgta tccggatttt tgtttggggc tgaagcagat
      121 tggcagtcag attgcaatca aagaatgaag gcgagccgtc aaaaacaaag ctatccgctt
      181 caccgccccg atatttagaa tttgtggcgc aaaccgacgg aggcggcatt aatttgagtg
      241 tagttgccga tgccggtatt gcgtttcagc caagcgccag acacgatggc ggaagtgcgt
      301 ttggaaaaat cataatcaac gccggcgatg atttgatcgt agctggtatt ttcgcctttt
      361 ttaccgcgtt cgatcaagtc gaaaccatgg gcatagctga tacgtggaac tgcattaccg
      421 aagcggtagg aagcagtcgc ggcaatttcg gtcgtactgt ttttggtttt ggctttgtcg
      481 ccattttcag acaaatccaa ctgagccgcc aaggcgagat tcaagccgcc ttcctcatag
      541 ccgcccgtca ggcggtgtac ctgatggttt ttcaagggat cggtaccttt ggcttcatca
      601 ctcgtgctgc cgagcaagaa caactcaaaa gcatcacgtc cgacattggc gtgtctcgca
      661 tatttaaagg catagctccc ggcaaatccg ccatttttgt aattcagacc ggcataatac
      721 acatccgatc cgggcttgcc gacaacagcc gcatgaacca ttttcttctc atccacataa
      781 gccggcttat aggcggactt gctgttttga gccggaacga attggacgct gccgctgaaa
      841 ccggaaaagt ccggagagtc gtagcgtacg gaaaccggca tatcgtcgtg gcgtttgaaa
      901 atacccaatt gcgaagccac atcattgttg ctgtcccaag gatcaatggc ttggctggca
      961 tcgtcaaact gattcgcaac gcgaccggcg cgcagcgtac cgaattcgcc tgccaagccg
     1021 ataaaggatt ccctgttgcc ccactgggtc gcgccgccgc cggcaacgga tacgtcttgc
     1081 tcaagctgcc aaacagcctt cagcccttcg cccaaatcct cgctcccctt aaagccgata
     1141 aacgagccga aatcgctgat tttcgtcctg atgcggcttt ttgccttagt aacttttacc
     1201 tgattgttcg tttgaccttg agcctttgag ggctgctcgg tcaattgcag ctggatgttc
     1261 ctgccttcca cgccggcttt gatttcgccg tacaggctga catcggcaac ggccgcaagc
     1321 ggcagtgcgg acaatacgag ggcggtaagt ttttttcgca tatcggcttc cttttgtaaa
     1381 tttgataaaa acctaaaaac atcggacaaa cacccgatat gtcttcaatt ataccccccc
     1441 ccccgcaaaa aaccattttt cagaacaaat atctgataaa tgccgcaacc tttattttaa
     1501 aaatgattat attttgatat aaaacaatag cttatttttt caaaaaacgt tgtgtttcta
     1561 caacacaatt caagcgcaga cctcgtgcga gccgatgcac tactgcctgg atgcagtccc
     1621 ggctttttaa aacgccataa aaaaacacac gcggcacttt atagcggatt aacaaaaacc
     1681 agtacggcgt tgcctcgcct tagctcaaag agaacgattc tctaaggtgc tcaaacacca
     1741 agtgaatcgg ttccgtgcta tttgtactgt cttcggcttc gccgccttgt cctgattttt
     1801 gttaatccac tataaagacc gtcgggcatc tgcagccgtc attcccgcgc aggcgggaat
     1861 ct
//
LOCUS       DAXHPV010000223         1838 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.223, whole genome shotgun sequence.
ACCESSION   DAXHPV010000223 DAXHPV010000000
VERSION     DAXHPV010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1838)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.223"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..215
                     /locus_tag="ACFM6C_001997"
     CDS             <1..215
                     /locus_tag="ACFM6C_001997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HFC6159385.1"
                     /translation="MELETVVPPEEGEGEGEGADGEMPEYLELHGGREDDISAPSQPE
                     PPTRNIKPLLFGLLIAFLGYLLGKIF"
     gene            250..1761
                     /gene="ubiB"
                     /locus_tag="ACFM6C_001998"
     CDS             250..1761
                     /gene="ubiB"
                     /locus_tag="ACFM6C_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HFC6159386.1"
                     /translation="MKWLKRLTVIVGTFYRYRLAGLCASLMGSGWICALLKMMPQSSK
                     LKNEPPAVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLS
                     REQIEKSLGQPIEKLYAEFETEPVASASIAQVHKARLHSGERVAVKVLRPNLLPLIEQ
                     DLSLMRFGAAWVERLFADGRRLKPREVVAEFDKYLHDELDLMREAANAGQLGRNFQNS
                     DMLIVPKVFYDYCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVEIFFTQVFR
                     DGFFHADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATA
                     HIESGWVPADTRAEELEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQ
                     LVLLQKTLLNIEGLGRQLDPDLDLWKTAKPFLVKWMNGQVGPKALWRNLKNEAPDWAQ
                     IIPSLPRKISALIDENRQQEMRDAYIHLVKVQQRQSLWLAAIAVVLLLILLLK"
BASE COUNT          409 a          495 c          505 g          429 t
ORIGIN      
        1 atatggagtt agaaacggtc gtgccgccgg aggaaggtga gggcgaagga gagggcgcgg
       61 atggggaaat gcccgaatat cttgaacttc atggcgggcg ggaagatgat atttccgcac
      121 cttcgcaacc cgaaccgccg acccgcaata tcaaaccgct gcttttcggg ctgctgattg
      181 cctttttggg ctatctgctc ggtaagattt tttgattgtc cgataaatgc tgtattcggg
      241 attttatata tgaaatggtt gaaacgcctg acggtcattg tcgggacttt ttaccgctat
      301 cggctggcag gtctgtgtgc ttcgctgatg ggtagcggtt ggatatgcgc tctgctgaaa
      361 atgatgccgc agtcgtccaa attgaaaaac gaaccgcctg ccgtccgtct gcgccttgcc
      421 ttggaaagcc tggggccgat tttcatcaag ttcgggcagg ttttgtccac acgccccgat
      481 ttgattccgc acgattacgc cgtcgaactg gcaaagttgc aagacaaagt gccgcctttt
      541 gacgcgcggc tttcgcgtga acaaatcgaa aaatcgctgg gccagcccat cgaaaagctg
      601 tatgcggaat ttgaaaccga gcccgtcgcc agcgcgtcca tcgcccaagt acacaaagcc
      661 cgcctgcatt cgggcgaacg agtggcggtc aaagttttgc gccccaatct tttgcccctt
      721 atcgaacagg atttgtcgct gatgcgtttc ggcgcggctt gggtcgagcg tctgtttgcc
      781 gacggcaggc gtctgaagcc gcgcgaagtg gtggcggagt tcgacaaata tctgcacgac
      841 gagttggatt tgatgcgcga agccgccaat gccggacaac ttggacgcaa tttccaaaac
      901 agcgatatgc tgattgtgcc gaaggtgttt tacgactact gcaccagcga cgtgctgacc
      961 atcgaatgga tggacggcac gccggtttcc gacatcgcca aactcaaagc agacggcatc
     1021 gatttgcaca aactcgccga ttacggcgtg gaaatctttt tcacgcaggt cttccgcgac
     1081 ggctttttcc acgcggatat gcaccccggc aatattttgg ttgccgccga caaccgctac
     1141 atcgccctcg atttcggcat cgtcggcacg ctgaccgatt acgacaaacg ctacctcgcc
     1201 atcaacttcc tcgccttctt caaccgcgat taccggcgcg tcgccaccgc ccacatcgaa
     1261 tcgggctggg tgcctgccga cacgcgtgcg gaagaattgg aagccgccgt ccgcgccgtg
     1321 tgcgaaccgg tgttcaacaa accgatttcg cagatttcct tcggcttggt gctgatgcgc
     1381 ctgtttgaag tcagccgccg cttcaatgtc gaaatccagc cgcagctggt attgctgcaa
     1441 aaaacgctgc tcaacatcga aggcttggga cggcagcttg atcccgattt ggacttgtgg
     1501 aaaaccgcca aaccgttttt ggtgaaatgg atgaacgggc aggtcggccc taaagccctt
     1561 tggcgcaacc tcaaaaacga agcccccgac tgggcgcaaa tcattccttc attgccgcgc
     1621 aaaatcagtg cgttgattga tgaaaaccgc cagcaggaaa tgcgtgatgc ctatatccat
     1681 ttggtcaaag tgcagcagcg gcaaagcctg tggctggcgg cgatagcggt tgttttgctg
     1741 ctgattttgc ttttgaaata ggttttgtcc gaatcattgc ccgactccgc ccgtttataa
     1801 ggaaaccggt tatagtggat taacaaaaac cagtacag
//
LOCUS       DAXHPV010000224         1816 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.224, whole genome shotgun sequence.
ACCESSION   DAXHPV010000224 DAXHPV010000000
VERSION     DAXHPV010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1816)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1816)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1816
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.224"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(29..460)
                     /locus_tag="ACFM6C_001999"
     CDS             complement(29..460)
                     /locus_tag="ACFM6C_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159387.1"
                     /translation="MKNNIFLNLNKKSINNNHFVISIFFETIYQFETKDTLLECFKNI
                     TTTGHFGVIGAQYEKIDATRWIGDYEEVNGFEYIDKAPSIYFSVGDDFNPEELIIPIN
                     LAYHYFNIAISDFLIAHPEYQKKCKEIQKTYSQTSCSLHET"
     gene            complement(476..>1816)
                     /locus_tag="ACFM6C_002000"
     CDS             complement(476..>1816)
                     /locus_tag="ACFM6C_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VENN motif pre-toxin domain-containing protein"
                     /protein_id="HFC6159388.1"
                     /translation="VNGGSLKDNLEANILAALVNTAHGEAASKIKQLDQHYIVHKIAH
                     AIAGCAAAAANKGKCQDGAIGAAVGEIVGEALTNGKNPDTLTAKEREQILAYSKLVAG
                     TVSGVVGGDVNAAANAAEVAVKNNQLSDKEGREFDNEMTACAKQNNPQLCRKNTVKKY
                     QNVADKRLAASIAICTDISRSTECRTIRKQHLIDSRSLHSSWEAGLIGKDDEWYKLFS
                     KSYTQADLALQSYHLNTAAKSWLQSGNTKPLSEWMSDQGYTLISGVNPRFIPIPRGFV
                     KQNTPITNVKYPEGISFDTNLKRHLANADGFSQKQGIKGAHNRTNFMAELNSRGGRVK
                     SETQTDIEGITRIKYEIPTLDRTGKPDGGFKEISSIKTVYNPKKFSDDKILQMAQNAA
                     SQGYSKASKIAQNERTKSISERKNVIQFSETFDGIKFRSYFDVNTGRITNIHPE"
BASE COUNT          485 a          359 c          313 g          659 t
ORIGIN      
        1 gctggagcac acaccttacg catggatttt aggtttcatg caggctacag cttgtttgag
       61 aatatgtttt ttgtatttct ttacactttt tttgatattc agggtgagct attaagaaat
      121 cagatattgc aatattaaag taatgatatg ctaaattaat aggtataatt aattcttcag
      181 gattgaaatc atctccaact gaaaaataaa tagaaggagc tttatcaata tactcaaatc
      241 catttacctc ttcataatct ccaatccatc tggtagcatc tattttttca tattgagcac
      301 ctattactcc aaaatgtccg gtagttgtaa tatttttaaa acactctaaa agcgtatctt
      361 tagtttcaaa ttggtaaatt gtttcaaaaa aaatcgaaat aacaaaatgg ttgttattta
      421 tagatttttt atttaagttt agaaaaatat tatttttcat aatttttcct ttaaattatt
      481 ctgggtgaat gtttgtaatt cttcctgtat ttacatcaaa atatgatcta aatttgattc
      541 cgtcaaaggt ttctgagaat tgaatgacat tttttctttc cgatattgat ttagttcttt
      601 cattttgagc aattttagag gcttttgaat atccttgtga agcagcattt tgagccattt
      661 gaagtatttt atcatcagaa aattttttag gattataaac agtttttata cttgaaattt
      721 ccttaaatcc accatcaggt ttacctgtcc tgtctagtgt aggaatctca tatttaattc
      781 gggtaatgcc ttcaatatca gtttgggttt cagattttac gcgtcctcct cgtgaattta
      841 gttctgccat aaaattggtg cggttatggg ctcctttaat gccctgtttt tgactaaaac
      901 catcagcatt tgccagatgt ctttttaggt ttgtatcgaa actgatgcct tccgggtatt
      961 tgacattagt aataggtgta ttttgtttta caaaccctct tggtattgga atgaatctag
     1021 gattaactcc tgaaataagt gtataacctt ggtcggacat ccattcggat aaaggctttg
     1081 tattgcccga ttgaagccaa gatttagcag cagtattcaa atgataagac tgtaaagcca
     1141 aatctgcttg ggtgtaagat ttgctgaata atttatacca ttcatcatct ttaccaatta
     1201 gacctgcttc ccaagatgaa tgaaggcttc tactatcgat caaatgttgt tttctgattg
     1261 ttctacattc agtactacgg gatatatccg tacatattgc aatcgaagca gcaagtcttt
     1321 tatcagcaac attttgatac ttttttacag tattttttct gcacagttga ggattattct
     1381 gtttggcgca tgcagtcatt tcgttatcaa attctctacc ctctttgtcg ctaagctgat
     1441 tatttttcac cgctacctca gccgcattcg ccgccgcatt tacatcgccg ccgaccacac
     1501 cgcttaccgt accggcaacc agtttgctgt atgccaaaat ctgttcgcgt tctttagctg
     1561 tcaaagtgtc aggatttttg ccgtttgtca aagcctcccc gactatctcg cccacagccg
     1621 cacctatcgc accatcctga cacttgccct tattcgccgc cgctgccgca cagcccgcta
     1681 tggcatgggc aatcttgtgg actatgtagt gctgatccaa ctgtttgatt ttactggctg
     1741 cttctccatg cgcggtattg accaaagccg caaggatatt cgcttccaga ttgtctttca
     1801 ggctgccgcc gttgac
//
LOCUS       DAXHPV010000225         1776 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.225, whole genome shotgun sequence.
ACCESSION   DAXHPV010000225 DAXHPV010000000
VERSION     DAXHPV010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1776)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1776)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1776
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.225"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            50..1219
                     /gene="metZ"
                     /locus_tag="ACFM6C_002001"
     CDS             50..1219
                     /gene="metZ"
                     /locus_tag="ACFM6C_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-succinylhomoserine sulfhydrylase"
                     /protein_id="HFC6159389.1"
                     /translation="MSKKLHPQTLAIRGGKEQTEYREHNQALFLTSSFMWDNAQHAAD
                     LFSKKIKGFTYTRTANPTTAAFEKRIAALEGAERAVATSTGMSAIQAAFFTFLQAGDH
                     VISSRSLFGTTVGFINNIVTKFGIEVSHVSPTDINEWKAAVKANTKLLFLETPSNPLG
                     EVADLEALAELAHGIGALLVVDNSLLSPVGSQPLKHGADISVSSATKAIDGHGRVMGG
                     VLAGSEELMAQVAVYCNSCGLAMSPFNAWQLLSGVETLSLRMEKQFDNALKIAQWLQA
                     QPQVQAVYYTGLPDHPQAALIRKQQNGGGIVIGFEVADQEAAWKVVDGVELFSRTANL
                     GDVRSTITHPWTTTHGRMQPEEKLAANIRPGLVRLSVGLEYVGDLIDDLKQALAR"
     gene            1314..1520
                     /locus_tag="ACFM6C_002002"
     CDS             1314..1520
                     /locus_tag="ACFM6C_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2788 domain-containing protein"
                     /protein_id="HFC6159390.1"
                     /translation="MDEAVFADWALKICLTGLIIFLGFIVWNLGKESKAGKFGIAILF
                     LVLGLGVFGFVFKELLIKFLVLPK"
BASE COUNT          428 a          465 c          463 g          420 t
ORIGIN      
        1 caacgggcgc acgctccgtt gccgaacgga taaaaccgag gaatcaccga tgagcaaaaa
       61 actccatccg caaacgctcg ccatacgcgg cggcaaagaa caaaccgaat accgcgaaca
      121 caatcaggca ttgttcctga ccagcagctt catgtgggac aacgcccaac acgctgccga
      181 tttgttttca aaaaaaatca aaggcttcac ttatacccgt accgccaacc cgaccacagc
      241 cgcctttgaa aaacgcatcg ccgctttgga aggtgcggaa cgcgcggtcg ccacttcgac
      301 cggcatgtcc gcgattcagg cggcgttttt cacctttttg caggcgggcg accatgtgat
      361 ttccagccgc agcctgttcg gcacgaccgt cggctttatc aataacatcg ttaccaaatt
      421 cggcatcgaa gtgagtcacg tgtcgccgac tgatataaac gaatggaaag ccgccgtcaa
      481 agccaacacc aaactgctgt ttttggaaac gccgtccaat cccttgggag aagtggccga
      541 cttggaagcc ttggcggaat tggcgcacgg catcggcgcg ctcttggtgg tggacaacag
      601 cctgctgtcg cctgtcggct ctcagccttt gaaacacggc gcggatattt ccgtttcctc
      661 cgcgaccaaa gccatagacg gacacgggcg cgtgatgggc ggcgtgttgg cgggttcgga
      721 agaactgatg gcgcaggtcg ccgtttactg caactcttgc gggctggcaa tgtcgccgtt
      781 taacgcatgg cagttgttga gcggcgtgga aaccctgtct ctgcgtatgg aaaaacagtt
      841 cgacaacgcc ttgaaaatcg cgcaatggct gcaagcgcag ccgcaggttc aagccgtgta
      901 ttacaccgga ttgcccgacc atccgcaggc ggcgcttatc cgcaaacagc aaaacggcgg
      961 tggcatcgtc atcggctttg aagtagccga ccaagaagcc gcgtggaaag ttgtggacgg
     1021 cgtggaactc ttttcccgaa ccgccaacct cggcgacgtg cgctcgacca tcacccatcc
     1081 gtggacaacc acgcacggca ggatgcagcc cgaagaaaaa ctcgccgcca acatccgccc
     1141 gggactggtg cgcctgtcgg tcggtttgga atatgttggc gatttgattg acgatttgaa
     1201 acaggcactc gcacgctgat tgcgtgttca gacggcatcg gcggaaaaac accgcaaatg
     1261 ccgtctgaaa cccttatctt atatggcata cacgtcaaca ataggaaaaa aatatggatg
     1321 aagcggtttt tgccgattgg gcgttgaaaa tctgcctgac cggtttgatt atttttttag
     1381 gttttatcgt ttggaatttg ggcaaggagt ccaaagcggg caaattcggc atcgccattt
     1441 tgtttttggt tttgggcttg ggcgtgttcg gttttgtgtt caaagagtta ttgattaagt
     1501 ttttggtatt gccgaaatag gtttgcggcc tgtcaaaatg ccgtctgaaa tcataaaaag
     1561 taatctgcac cctaaaagtt tgatttaacc gccaactgat taaggtgcgg atttttatga
     1621 caaaataaaa atcatctttc cgcagtcatt cccacggacg cgaaagtctg tctttttgaa
     1681 tcccggataa ttttacatcg tcattcccgc gcaggcggga atctagtccg ttcggtttca
     1741 gtcatttacg ataaattcct gttgcttttc atttct
//
LOCUS       DAXHPV010000226         1730 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.226, whole genome shotgun sequence.
ACCESSION   DAXHPV010000226 DAXHPV010000000
VERSION     DAXHPV010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1730)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1730)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1730
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.226"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(45..362)
                     /locus_tag="ACFM6C_002003"
     CDS             complement(45..362)
                     /locus_tag="ACFM6C_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HFC6159391.1"
                     /translation="MVVRGGIYLVSLDPTVGSEIKKTRPCVVVSPPEIHNYLKTVLIV
                     PMTSGSRPAPFRVNVRFQDKDGLLLPEQIRAVDKAGLVKHLGNLDNSTAEKLFAVLQE
                     MFA"
     gene            complement(356..595)
                     /locus_tag="ACFM6C_002004"
     CDS             complement(356..595)
                     /locus_tag="ACFM6C_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="growth regulator"
                     /protein_id="HFC6159392.1"
                     /translation="MILNIRKMGNSQGVILPKSLLGQIGAVDSLAVTVEKGNIILSCP
                     TVRRGWAEAAAMLVETEQEHFFSEIENEADKEWIW"
     gene            complement(718..1515)
                     /gene="truA"
                     /locus_tag="ACFM6C_002005"
     CDS             complement(718..1515)
                     /gene="truA"
                     /locus_tag="ACFM6C_002005"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HFC6159393.1"
                     /translation="MDTAQKQRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQI
                     AGEAVSTTVAGRTDTGVHATAQVVHFDTAAVRPVQAWVRGVNAHLPEGIAVLHARQVA
                     PEFHARFDAYGRHYRYLLESAPVRSPLLKNRAGWTHLKLDIGQMRQAAALLIGEQDFS
                     SFRAAECQAKSPVKTIYRADLTQSSGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLS
                     VEGFAALIQERSRLKAPPTFMPDGLYLTGVDYPEAYGIIRPQIPEWL"
BASE COUNT          393 a          416 c          495 g          426 t
ORIGIN      
        1 aagttaatcc actataatga acacaatcca ttcagactat tcaatcaggc aaacatctcc
       61 tgcaatactg caaacagttt ttcagccgta ctgttgtcta aatttccaag atgtttgacc
      121 aatccggctt tatccacagc cctaatctgt tcgggcaaaa gcaaaccgtc tttatcctga
      181 aagcggacat tgacgcggaa cggggcagga cggcttccgc tcgtcatggg aacgatcagc
      241 acagtcttga gatagttgtg tatttcagga ggagagacta cgacacaagg acgtgtcttt
      301 ttgatttcgc ttcctacggt cgggtctaag gagaccagat agattccgcc gcgtactacc
      361 atatccattc tttatccgct tcgttttcaa tttcggaaaa aaaatgctcc tgctcggttt
      421 cgacaagcat tgcggcagct tctgcccatc ccctgcgaac agtaggacag cttaaaataa
      481 tattgccctt ttcaactgta acagccaagc tgtccactgc ccctatttga cccaataatg
      541 atttgggcag aatcacacct tgcgagtttc ccattttgcg tatgttgaga atcatatacg
      601 taccatattt acctgtttat gtaataacaa tgttagtacc ttgatgaggt agtgtcaaca
      661 tggaaaaaga ttgcctgaca gtttgtccga tttcaaaatc tccgcgacaa gaatgtttta
      721 aagccattcg gggatttggg ggcggatgat gccgtatgcc tcgggatagt cgacgccggt
      781 caggtaaagc ccgtcgggca tgaaggtcgg cggggctttg aggcggctgc gttcttgaat
      841 cagtgcggcg aagccttcga cgctgagtct gccgctgccg acatagacga gcgcacccat
      901 gatgttgcgt accatgtggt gcaaaaaggc gttgccgtgc aaatcgaggc ggacgagtcc
      961 tgagctttgg gtaaggtcgg cgcggtagat ggttttgacg ggggattttg cctggcattc
     1021 ggcggcgcgg aagctggaga agtcttgttc gccgatcaat aaggcggcag cctgccgcat
     1081 ctgcccgatg tcgagtttga ggtgtgtcca gcctgccctg tttttgagca ggggggaacg
     1141 gacgggggcg gattcgagca ggtagcggta atgccgtccg tatgcgtcga agcgggcgtg
     1201 aaattcgggg gcgacctgtc gggcgtgcaa aacggcaatg ccttcgggca ggtgggcatt
     1261 tacgccgcgc acccatgcct gaaccggacg gacggcggca gtatcaaaat gaacgacttg
     1321 ggcagtcgca tgaacgccgg tatcggtcct gccggcaacg gtggtggaaa ccgcttcccc
     1381 tgctatttgg gcgagcgcgg tttccaatgc cgcctgaacg gtcggtacgc cgtcagcctg
     1441 tttctgccag ccgtaaaagc ggctgccgtc ataggatagg gttattgccc agcgttgttt
     1501 ttgtgcggta tccatcggat ttgggattcg gataaatgtt cagactgcat tgtatcgcag
     1561 attttgcagg gaaacggcaa acgcccaggg cgagcggcgt tgtttgggga gttgttgggg
     1621 gggggatgca gttgctacga atcgctatcc tgtgaattta ccctgtcagg agtgcccgaa
     1681 tcgtcattcc cgcgcaggcg ggaatctagg acgtaaaatc taaagaaacc
//
LOCUS       DAXHPV010000227         1720 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.227, whole genome shotgun sequence.
ACCESSION   DAXHPV010000227 DAXHPV010000000
VERSION     DAXHPV010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1720)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1720)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1720
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.227"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            342..1646
                     /locus_tag="ACFM6C_002006"
     CDS             342..1646
                     /locus_tag="ACFM6C_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium channel activity
                     [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HFC6159394.1"
                     /translation="MKKHIWAASLLPTSLSAEPLNWWKPYSAVNSGDTAWVMTAAALV
                     LLMTLPGLALFYGGMVRKKNLLSTMMHSFSIATLVGILWVAVGYSLAFTPGNAFIGGL
                     GRVFLSGMQIDAAAQMLTVSPNAPTVPEPVFMFFQMTFAIISTAIITGAFAERMKYSA
                     MMLFSGIWFLLVYVPGAHWVWGGGFMSKGGVLDYAGGTVVHINAGIAGLVAALVLGRR
                     IGYGREAMPPHNMAMTLIGAAMLWFGWFGFNAGSALAADAAAGMAMAVTQVSAVFGAA
                     GWLACEKIAGHKPSALGLASGAVSGLVGITPAAGFTGPSGAAAIGILTAAACFVSVTV
                     VKHKLRYDDSLDAFGIHGFGGLVGGILTGIFFDNRIFGGDAAVWQQLWIQVKDGFVMA
                     AYSGLMSWAILKVVGKICGGLRVGKDVEREGLDLNIHGERVE"
BASE COUNT          354 a          431 c          507 g          428 t
ORIGIN      
        1 aattaaaaat ttttaatata ttaatcaata aattaatttt ataaaataaa aatattgtca
       61 acaatatttt gccttatcgc ccaaacctct gtatattttc ctacagtaaa ttgttgacaa
      121 tccatacgcc cacatatgcg ccgcctaagg ataaatcctc ccgccggaca acgggtgcaa
      181 gggatcggat gcgatatttc catattcaaa caagggattg gcggcacatc ggcaaaatcc
      241 ccgcgccgcg ccggtccggc agggcttgcg tccctcccgg acaagccccg accccgcctt
      301 tccgaaagac gggctcaacc attaaggaaa ctttaatcaa aatgaaaaaa cacatatggg
      361 cggcatcttt gctgccgaca tccctatcgg cagaaccttt aaactggtgg aagccttatt
      421 ccgccgtcaa ttcgggcgat accgcctggg tgatgactgc ggctgccttg gtactgttga
      481 tgacgcttcc cgggctggct ttattctacg gcggtatggt gcggaaaaaa aacctgctct
      541 cgacgatgat gcacagcttt tccatcgcga cattggtggg catcctttgg gtcgccgtcg
      601 gctattcttt agcgttcacg ccgggaaatg cctttatcgg cggtttgggg cgcgtatttt
      661 taagcgggat gcagatagac gctgccgcac agatgctgac cgtgtcgccc aatgcgccga
      721 ctgttcccga accggtattt atgttttttc agatgacgtt tgccattatt tcgaccgcca
      781 ttattaccgg cgcgtttgcc gaacggatga aatattcggc aatgatgctg ttttcgggca
      841 tatggttttt attggtttat gtgccgggcg cgcattgggt gtggggcggc ggctttatga
      901 gcaagggcgg cgtattggat tatgccggcg gtacggtggt gcacatcaat gccggtatcg
      961 cgggactcgt cgccgccttg gttttgggca ggcgcatagg ctacgggcgc gaggcgatgc
     1021 ctccgcacaa tatggcgatg acactgatcg gcgcggcaat gttgtggttc ggctggttcg
     1081 gctttaacgc cggatccgca cttgcggcag acgcggcggc gggtatggcg atggcggtaa
     1141 cgcaggtgtc ggccgtattc ggcgcggcag gctggcttgc ctgcgaaaaa atagcgggac
     1201 acaaaccttc cgctttgggg ctggcttccg gcgcggtttc cggtctggtc ggcatcaccc
     1261 ctgccgccgg ctttaccggc ccgtcgggcg cggccgccat cggtatattg actgccgccg
     1321 cgtgctttgt gtccgtcacc gtcgtcaaac acaaattgcg ttacgatgat tctttggacg
     1381 ctttcggcat acacggattc ggcgggctgg tgggcggaat attgaccggc atctttttcg
     1441 acaaccgcat tttcggcggg gatgcggcag tttggcagca gttgtggata caggtaaaag
     1501 acgggttcgt tatggcggca tacagcgggc tgatgagttg ggcgattttg aaggtcgtgg
     1561 ggaaaatctg cggcggcctg cgcgtcggca aggatgtcga acgcgaaggt ttggatctga
     1621 atatccacgg cgaacgcgtg gaataagggc ggctatgccg tctgaagcct gaaaatcggg
     1681 tttcagacgg catttttcac gtttgccgcc gatggataaa
//
LOCUS       DAXHPV010000228         1702 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.228, whole genome shotgun sequence.
ACCESSION   DAXHPV010000228 DAXHPV010000000
VERSION     DAXHPV010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1702)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1702)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1702
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.228"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            62..1435
                     /locus_tag="ACFM6C_002007"
     CDS             62..1435
                     /locus_tag="ACFM6C_002007"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HFC6159395.1"
                     /translation="MSNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLL
                     AAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSY
                     IKNLPLRHTVLFGGMNMDKQTADLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLD
                     EADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQN
                     TTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSA
                     QAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARGLDIAELPFVINYEMPAQPEDYV
                     HRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKLLIERIEGFEPQWWEQGGAKP
                     EKTEMREPRQRNRYESARAQREKNTRPETTANDAGAACGKIAGRSRRSRREHRTCALL
                     QPRYGVK"
     gene            1615..>1702
                     /locus_tag="ACFM6C_002008"
     CDS             1615..>1702
                     /locus_tag="ACFM6C_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009118462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HFC6159396.1"
                     /translation="MSTQFDVAVIGAGPAGSVASALLRKKGYS"
BASE COUNT          437 a          557 c          409 g          299 t
ORIGIN      
        1 ttccccatcc tatcggtttc ccgcttcaga cggcataagg tctgaaagaa agactacaat
       61 tatgagtaat ccattttcct ctttaggttt gggtacggaa ctcgtttccg cactgaccgc
      121 gcaaggttac gaaaacccga cgcccatcca agccgccgcc attcccaaag cactcgccgg
      181 tcatgattta ctagccgccg cgcaaaccgg cacgggcaaa accgccgcct ttatgctgcc
      241 ctcgctcgaa cgcctcaaac gttacgccac cgccagcacc tcgcccgcga tgcaccccgt
      301 gcgtatgctc gtgttgaccc ccacgcgcga actcgccgac caaatcgacc aaaacgtgca
      361 gtcctacatc aaaaacctgc cgctgcgcca caccgtcttg ttcggcggta tgaatatgga
      421 caaacagacc gccgatttgc gtgccggctg cgaaatcgtc gtcgccacag tcggacggct
      481 gctcgaccac gtgaaacaaa aaaacatcag tttgaacaaa gtcgaaatcg tcgttctgga
      541 cgaagcagac cgcatgttgg atatggggtt tatcgacgac atccgcaaaa tcatgcagat
      601 gctgcccaaa caacgccaaa ccctgctctt ttccgctacc ttctccgcac cgatacgcaa
      661 actggcgcaa gacttcatga acgcgcccga aaccgtcgaa gtcgccgcgc aaaacaccac
      721 caacgccaac gtcgaacaac acatcatcgc cgtcgatacc attcagaagc gcaacctgct
      781 cgaacggctg attgtcgatt tgcatatgaa ccaggtcatc gtgttctgca aaaccaaaca
      841 aagcgtcgac cgcgtaacgc gcgaactggt gcgccgcaac ctgtccgcac aggcgataca
      901 cggcgaccgt tcccaacaaa gccggctcga aacactcaac gccttcaaag acggcagcct
      961 gcgcgtcctc gtcgccaccg acatcgccgc gcgcgggctg gacattgccg aactgccctt
     1021 cgtcatcaat tacgaaatgc ccgcccagcc cgaagactac gtccaccgca tcgggcgcac
     1081 ggggcgcgcg ggcgcggacg gcgtggcgat ttccctgatg gacgaatccg aacagaaaat
     1141 gtttgaatcc attaaagagc tgaccggcaa caagctgctc atcgagcgca tcgagggctt
     1201 cgagccgcaa tggtgggaac agggcggcgc aaaaccggaa aaaaccgaaa tgcgcgaacc
     1261 gagacaacgc aaccgctacg aatccgccag ggctcagcgc gaaaaaaata cccgaccgga
     1321 aaccacggca aacgatgcgg gcgcggcttg cggaaaaatt gccggacgca gccgccgaag
     1381 ccgtcgggaa caccggacgt gcgccctgct ccaaccgcgt tacggcgtaa aataaccctg
     1441 aaaatcaaat gccgtctgaa catttcccgt ttcagacggc atttttcaaa ccggactgac
     1501 gcatcgggag caaccgcccg caccggataa atttcttccg caaacagttt cagacggcat
     1561 ttgctgcctg tacaatatca tttccttttc cactcaaacc atcaggattt cccaatgtcc
     1621 acccaattcg atgtcgccgt aatcggcgca ggtccggcag gctcggtcgc atccgccctg
     1681 ctccgcaaaa aaggttatag tg
//
LOCUS       DAXHPV010000229         1572 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.229, whole genome shotgun sequence.
ACCESSION   DAXHPV010000229 DAXHPV010000000
VERSION     DAXHPV010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1572)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1572)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.229"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(209..1572)
                     /locus_tag="ACFM6C_002009"
                     /pseudo
     CDS             complement(209..1572)
                     /locus_tag="ACFM6C_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224807.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003941 - L-serine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
BASE COUNT          289 a          429 c          505 g          349 t
ORIGIN      
        1 cttgccggat gctgcaaaca acgccggttt gcattcctga tggcggtggt tttcttagac
       61 gaacgcccga acacgcagga atggataggc ttggggctgg ttacggcggg cgtgttgacg
      121 ctggcactga aacggtaaag ccgcaagaaa taaatgaaat gccgtctaaa aaactgtttt
      181 cagacggcat tttcgtttct gtccatcctc agcactcgac cacgcgcacg gatacgggga
      241 cggctttttt ccggagcgtg gcggcgagtc cggcaagcga ggtttctttg taggtcgcct
      301 tcatatcccg gccggtttgc agcatggttc ggatgacttc gtcgagcgag acttttttgt
      361 ccgtgccgtc ttccaaaagc gcgagcgtgc cgagtttgag ggctttttcg gcggcgatgc
      421 cgttgcgttc gatacagggg atttgcacca gcccgccgac ggggtcgcaa gtcagcccca
      481 aatggtgttc catcgccatt tcagcggcgt tttccacttg tttgggcgtg ccgccgatga
      541 cttcggcgta tgcgcccgcc gccatcgaac acgctacgcc gacttcgccc tgacagccga
      601 catccgcacc ggaaatggag gcgttggtct tgtagaggat gccgattgcg cctgcggtga
      661 gcaggaagtt ttcgacgcgt tcctgtgtgg cgtgcggatt gaacttgcgg aaatagtgca
      721 atacggcggg aatgatgcct gccgcgccgt tggtcggtgc ggtaacgacg cgtccgtcgg
      781 cggcgttttc ttcgttgacc gccatggcgt acaccatcgg ccagagctgg gtgttgacga
      841 tttcggtttc gcgcaggact ttgagcttgg cggcaagctg cggggcgcgg cggcggacgt
      901 tcaatcagct gggcagttcg ccgtccgcac ccaagccgcg tttgatgcag ccttccataa
      961 cctcggcaac ggcagcggcg cggcggcgga tttcggcttc gccgcatccg gcaagcgcgg
     1021 cttcgtttgc caacacgact tcggagatgt cgagccggtt cagacggcat cgggcaagca
     1081 gttcggcgca actggtatag ggatagggaa cggctttttc cgtttccgcc tgccggtcaa
     1141 aatcttcttc ggtaacgaca aagccgccgc cgaccgaata ataaacctgt tcattcaata
     1201 ccgtgccgtc tgaagcatag gcggtaaaac gcaggccgtt ggggtgtttg ggcagcactt
     1261 gattgccgag tatgttcagg tcgcggtcgg ggatgaagcg gatttcttgc ccgttgagcc
     1321 ggaggatgtg ctgcgtgcgg atgcgttcga ggcgttcggg aatgccggca agcgggatgt
     1381 cgtgcggcag gctgccttcc aaaccgagca tcagcgcgtc aaatgtaccg tgtccgtatc
     1441 cggtcagtgc gagcgagccg taaatgtcga tgacgatgcg aacagcctgt gcatccaaac
     1501 ctgccgcaaa ggcggcggct gccttcatcg ggccgaccgt atgcgaactg gaaggcccga
     1561 taccgatttt ga
//
LOCUS       DAXHPV010000230         1555 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.230, whole genome shotgun sequence.
ACCESSION   DAXHPV010000230 DAXHPV010000000
VERSION     DAXHPV010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1555)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1555)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1555
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.230"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..758)
                     /locus_tag="ACFM6C_002010"
     CDS             complement(<1..758)
                     /locus_tag="ACFM6C_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159397.1"
                     /translation="MEIFEVNVYTKYNPKDPKQNIIGTVKASYVSDGAGGYLKDKNGN
                     PYIAPVGYNPHEAWAYGAENPLNLLNYGTGKEKDLQRSFHGKSYGGFVPAFQPIASFD
                     VGVACAGAIGVSKDICIAGGGAVNLRNSLSNSNINTEGKYYNNPPNVPNIENGYDWGK
                     NLGTFNDSLENSLKETLNNIRNKFKEIQNSFHNLTDRNISFDSESIGSLLKEKFEDWS
                     HRVYDWLPDDWNLRKELYRNRSGKYHVYDPLALD"
     gene            complement(1334..>1555)
                     /locus_tag="ACFM6C_002011"
     CDS             complement(1334..>1555)
                     /locus_tag="ACFM6C_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HFC6159398.1"
                     /translation="QDGISQTNELRTLEELGIQSLDFAYKDVNKNLGKESKPQSAVLA
                     IHTPFVCFLGNLKGIICTRHNPILYFTKN"
BASE COUNT          552 a          254 c          238 g          511 t
ORIGIN      
        1 aaatctaggg caagggggtc gtaaacgtgg tatttgcctg aacgatttct gtataattct
       61 ttccgtagat tccaatcatc aggtagccag tcatataccc tatgagacca gtcttcaaat
      121 ttctccttca ggagactgcc aatgctttca gaatcaaaag aaatatttct atctgttaaa
      181 ttatgaaatg aattctgaat ctccttaaat ttattcctga tattatttaa tgtttctttt
      241 aatgaatttt ctaaagaatc attaaatgta ccaaggtttt ttccccaatc atatccattt
      301 tctatatttg gaacattagg cgggttgtta tagtatttcc cctcagtatt gatattacta
      361 ttagataacg aattccttaa atttaccgct ccacctccag caatgcaaat atccttagaa
      421 acaccaattg caccagcaca agctactcca acatcaaaag atgcaatggg ctgaaacgct
      481 ggcacaaatc ccccatacga ttttccatgg aatgaacgct gcaaatcttt ttctttacct
      541 gtaccatagt ttagtagatt aagtggattc tccgctccat aagcccatgc ttcatgaggg
      601 ttgtatccga cgggagcaat ataaggatta ccattcttat cttttagata accaccagct
      661 ccatctgaaa catacgaagc tttaactgta ccaataatat tttgcttagg atcttttgga
      721 ttatattttg tatatacatt tacctcaaaa atttccataa ctgagccttt acttgttgat
      781 aaaagataaa ataaaattag aaactaaaag tgagaaaaag ttaataataa tagggatgta
      841 taaatgtaaa ggttctgttt catagctaag gttatctgaa tatatggaaa aaaagtaaaa
      901 gtccataaaa gtaaaatata tagataatga taatgataat agtattatca ctttcctaga
      961 gtaaggataa tattttttta cgataaaaaa atataaaata ggataaataa ttgccatata
     1021 gatagatttt gtagcaaaat taaaaataaa taataaaaat aatgtaataa agtatatttt
     1081 ttggctatga aataaaattg tacataattg aacgagcaga tcaaaaaatg aactacatat
     1141 aacaataaat aataacgtat ttaccatact aaatttaata ggtctcatta tcatatttaa
     1201 taaccacttc atagtaaatg cagagtgggt ggaaacactc actttatggt ttgctacgct
     1261 ctgctcaatt agcaacccga taacccaata tagataatag ggcaattaat ccaatctaat
     1321 ttgttaaaat acgttaattt tttgtaaaat aaagtattgg attatgtcgg gtgcaaatga
     1381 tgccttttag attgcctaaa aaacaaacaa acggtgtgtg tatagcaagt actgcacttt
     1441 gcggcttact ttctttaccg agatttttat ttacatcttt ataggcgaaa tccaaagatt
     1501 gaatacccaa ttcttcaagg gtgcggagtt cgttggtttg ggaaatgccg tcctg
//
LOCUS       DAXHPV010000231         1524 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.231, whole genome shotgun sequence.
ACCESSION   DAXHPV010000231 DAXHPV010000000
VERSION     DAXHPV010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1524)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1524)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1524
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.231"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(165..1154)
                     /gene="porB"
                     /locus_tag="ACFM6C_002012"
     CDS             complement(165..1154)
                     /gene="porB"
                     /locus_tag="ACFM6C_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric porin PorB"
                     /protein_id="HFC6159399.1"
                     /translation="MKKSLIALTLAALPVAAMADVTLYGTIKAGVETSRSVAHNGAQA
                     TSVETGTGIVDLGSKIGFKGQEDLGNGLKAIWQVEQKASIAGTDSGWGNRQSFIGLKG
                     GFGKLRVGRLNSVLKDTGDINPWDSKSDYLGVNKIAEPEARLISVRYDSPEFAGLSGS
                     VQYALNDNAGRHNSESYHAGFNYKNGGFFVQYGGAYKRHQDVGNVKIEKYQIHRLVSG
                     YDNDALYASVAVQQQDAKLVEDNSHNSQTEVAATLAYRFGNVTPRVSYAHGFKGSFDD
                     ADYTNDYDQVVVGAEYDFSKRTSALVSAGWLQEGKGESKFVSTAGGVGLRHKF"
BASE COUNT          382 a          345 c          393 g          404 t
ORIGIN      
        1 cctgcgcggg aatgacggca tattttgaca ttgaataaaa aagactaaaa acagaaaaaa
       61 gccaaacaga aaaaagccaa acagaaaaaa gccaaacaga aaaaagccaa acagaaaaaa
      121 gcctgtctgg cgacaggctt tttgttgata ccaatctttg cagattagaa tttgtggcgc
      181 agaccgacac cgccggcagt cgatacgaat ttgctttcgc ctttgccttc ttgcaaccaa
      241 ccggcagaaa ccaaggcaga agtgcgtttg gagaagtcgt attccgcacc gacaaccact
      301 tggtcgtaat cgttggtgta gtctgcatca tcaaacgagc ctttgaagcc gtgggcgtaa
      361 gaaacgcggg gcgttacgtt gccgaagcgg tatgccaagg tagcggcaac ttcggtttga
      421 gagttgtgcg aattgtcttc aaccagtttc gcgtcttgtt gctgtacggc tacggaagcg
      481 tatagggcat cattgtcgta accgctgacc aaacggtgaa tctggtattt ctcaatcttc
      541 acgttaccca catcctgatg tcttttatag gcaccgccat attgcacgaa gaagccgccg
      601 tttttgtagt tgaagccggc atggtaagat tcgctgttat gtctgcctgc attgtcgtta
      661 agcgcgtatt gtacgctgcc gctgaggccg gcaaattcgg gagaatcgta gcgtacggaa
      721 atgaggcgtg cttcgggttc ggcaattttg tttacaccca aatagtcgct tttgctatcc
      781 caaggattga tgtcgccggt gtctttcagg acgctgttca aacggccgac gcgcaattta
      841 ccgaagccgc ctttcaaacc gatgaaggat tggcggttgc cccaaccgga gtcagtaccg
      901 gcgatagatg ccttttgctc aacctgccaa atggctttca ggccgttgcc gaggtcttct
      961 tggcctttga agccgatttt cgaacccaaa tcaacgatgc cggtaccggt ttcaacgcta
     1021 gtcgcctgag ctccattgtg agctacggag cgggaagttt ctacgccggc tttgatggtg
     1081 ccgtacaggg taacgtcagc cattgctgca acaggaaggg ctgccaaagt cagggcaatc
     1141 agggattttt tcattgctgt attccttttt tggttaagaa atttaagcag gccgggcttt
     1201 ccaagccgct tagctttgca tttaccgccg acgttttcgg cgattccatg tctgaaacta
     1261 tagatgttcc tgtctgaaaa aacaaacttc tgcctgtttt tgtgtggaat tcgatgtgta
     1321 ttttgaaggg cggatagaga tattgtgggt attttttgtt ttataacata tggttattta
     1381 aattttttaa gatttgcatt tttacaacac ttactcggga gggtattgga gggcattgca
     1441 aaccgggggt tataaagacg gcaaaaaacg cgcacgcggt ttctttcgga acgggcggat
     1501 gcaaaacccg cccctgcggc agga
//
LOCUS       DAXHPV010000232         1503 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.232, whole genome shotgun sequence.
ACCESSION   DAXHPV010000232 DAXHPV010000000
VERSION     DAXHPV010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1503)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1503)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.232"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            205..>1503
                     /locus_tag="ACFM6C_002013"
     rRNA            205..>1503
                     /locus_tag="ACFM6C_002013"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          401 a          321 c          458 g          323 t
ORIGIN      
        1 agcacagaat gttggggata tcgagagata tcttgacagg cggaagagat actttataat
       61 tcgcaacgct ctttaacaaa acagattacc gataagtgtg agtgccttga gcctcacact
      121 gtttgaaaga cagacaagat aatgttttga acattgtcct gttggtttct ttgaagcaga
      181 ccagaagtta aaaagttaga gattgaacat aagagtttga tcctggctca gattgaacgc
      241 tggcggcatg ctttacacat gcaagtcgga cggcagcaca gagaagcttg cttcttgggt
      301 ggcgagtggc gaacgggtga gtaacatatc ggaacgtacc gagtagtggg ggataactga
      361 tcgaaagatc agctaatacc gcatacgtct tgagagagaa agcaggggac ctttgggcct
      421 tgcgctattc gagcggccga tatctgatta gctggttggt ggggtaaagg cctaccaagg
      481 cgacgatcag tagcgggtct gagaggatga tccgccacac tgggactgag acacggccca
      541 gactcctacg ggaggcagca gtggggaatt ttggacaatg ggcgcaagcc tgatccagcc
      601 atgccgcgtg tctgaagaag gccttcgggt tgtaaaggac ttttgtcagg gaagaaaagg
      661 ctgttgctaa taccagcggc cgatgacggt acctgaagaa taagcaccgg ctaactacgt
      721 gccagcagcc gcggtaatac gtagggtgcg agcgttaatc ggaattactg ggcgtaaagc
      781 gggcgcagac ggttacttaa gcaggatgtg aaatccccgg gctcaacccg ggaactgcgt
      841 tctgaactgg gtgactagag tgtgtcagag ggaggtagaa ttccacgtgt agcagtgaaa
      901 tgcgtagaga tgtggaggaa taccgatggc gaaggcagcc tcctgggaca acactgacgt
      961 tcatgcccga aagcgtgggt agcaaacagg attagatacc ctggtagtcc acgccctaaa
     1021 cgatgtcaat tagctgttgg gcaacttgat tgcttagtag cgtagctaac gcgtgaaatt
     1081 gaccgcctgg ggagtacggt cgcaagatta aaactcaaag gaattgacgg ggacccgcac
     1141 aagcggtgga tgatgtggat taattcgatg caacgcgaag aaccttacct ggtcttgaca
     1201 tgtacggaat cctctggaga cggaggagtg ccttcgggag ccgtaacaca ggtgctgcat
     1261 ggctgtcgtc agctcgtgtc gtgagatgtt gggttaagtc ccgcaacgag cgcaaccctt
     1321 gtcattagtt gccatcattc agttgggtac tctaatgaga ctgccggtga caagccggag
     1381 gaaggtgggg atgacgtcaa gtcctcatgg cccttatgac cagggcttca cacgtcatac
     1441 aatggtcggt acagagggta gccaagccgc gaggcggagc caatctcaca aaaccgatcg
     1501 tag
//
LOCUS       DAXHPV010000233         1464 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.233, whole genome shotgun sequence.
ACCESSION   DAXHPV010000233 DAXHPV010000000
VERSION     DAXHPV010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1464)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1464)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1464
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.233"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..922
                     /locus_tag="ACFM6C_002014"
     CDS             <1..922
                     /locus_tag="ACFM6C_002014"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009346062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFC6159400.1"
                     /translation="AKVAKVAKVAATAQKEAAPAQQQGGIRFSDGIAAVADNEVITRR
                     RLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKRRNIQASEAEIDAVV
                     AKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDAFLEQAQKQGITLPE
                     GAPLRQYRAQHILIKADSENAAVSAESTIRKIYDQARNGTDFAGLARRYSQDASAGNG
                     GDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQFGWHIIKLNEVREAGTPQERVRNA
                     VRQYIFQQKAEQSTVNLLRDLHSGAYIDIR"
BASE COUNT          398 a          422 c          374 g          270 t
ORIGIN      
        1 tgccaaagtt gccaaagttg ccaaagttgc cgccacggcg caaaaagaag ccgcacccgc
       61 acaacagcag ggcggtatcc gcttttcaga cggcattgcc gccgttgccg acaacgaagt
      121 catcacgcgc cgccggcttg ccgaagccgt tgccgaagcc aaagccaacc tgcccaaaga
      181 cgcgcagata agcgaatccg agctgtcccg acaggtgctg atgcagcttg tcaaccaatc
      241 cctgattgta caggcgggca aacgccgcaa cattcaagca agcgaagcgg aaatcgatgc
      301 cgtcgtcgca aaaaatcccg ccctcaaaaa cctcagcccc gcccaacgcc gcgattttgc
      361 cgacaacatc attgccgaaa aagtccgcca gcaggcagtg atgcagaaca gccgcgtgag
      421 cgaagctgaa attgatgcct tcctcgagca ggcgcaaaaa caaggcatca ccctgcccga
      481 aggcgcaccg ttgcgccaat accgcgccca acacatcctg attaaggccg acagcgaaaa
      541 cgccgccgtc agcgcagaaa gtaccatccg caaaatctat gaccaggcgc gcaacggcac
      601 ggatttcgca ggtttggcac gccgatattc ccaagacgca agcgcgggta acggaggcga
      661 tttgggctgg tttgccgacg gcgtgatggt tcccgccttt gaagaagccg tccacgcgct
      721 caaacccgga caggtcggcg ctcccgtccg cacccaattc ggctggcaca tcatcaagct
      781 gaacgaagta cgcgaggcgg gcacgcctca ggaacgcgtc cgcaacgccg tgcgtcagta
      841 catcttccaa caaaaagccg aacagtcaac cgtcaacctg ttgcgcgacc tgcattccgg
      901 cgcgtacatc gacatccgct gaaacggttt gaatcaaaaa gccataccga tcggcaaaaa
      961 tccgggcggt atggcttttt tgaatttcga gttactttta caccgtcatt cgtcattccc
     1021 gcgaaagcgg gaatctagaa acgaaaagta acaggaattt atcgggaatg gctggaattt
     1081 aaaggtctgg attcccgctt tcgcgggaat gacgggattt tgggttgtgg taatttatcg
     1141 gaaaaacaaa aaaacctatg ccgtcattcc cgagcaggcg ggaatccggt tatttaaaac
     1201 tgcagaaatt tatccgaagc aacaacaatc tttccatcgt cattcccgcg taggcgggaa
     1261 tctagcaacg aaaagtaaca ggaatttatc gggaaaacag aaacctctat gccgtcattc
     1321 ccgcgaaagc gggaatctag gacgtagaat ctaaagaaac cgttttatcc gataagtttc
     1381 tgtgccgaag ggtctggatt tccgctttcg cgggaatgac ggcgcataag ttcccgtgcg
     1441 gacagaccta gattcccaca tgcg
//
LOCUS       DAXHPV010000234         1451 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.234, whole genome shotgun sequence.
ACCESSION   DAXHPV010000234 DAXHPV010000000
VERSION     DAXHPV010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1451)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1451)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1451
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.234"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            27..1364
                     /locus_tag="ACFM6C_002015"
     CDS             27..1364
                     /locus_tag="ACFM6C_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HFC6159401.1"
                     /translation="MSNHTSWSSKIGFVLAAAGSAIGLGAIWKFPYTAGTNGGAVFFL
                     LFLIFTILVALPVQLAEFYIGRTGGKNAVDSFRALRPGTQWLWVGRMGVAACFILLSF
                     YSVVGGWVLNYVVHSFTGAIHAGADFEALFGTTISNPAGSLSYQALFMLITVWVVKGG
                     ISDGIEKANRYLMPGLFILFIALAIRSLTLPGAMEGVSFLLKPNWSYFKADTMITALG
                     QAFFALSIGVSAMITYASYLGKDQDMFRSGHTIMWMNLLVSLLAGLVIFPAVFAFGFE
                     PSQGPGLIFIVLPAVFMKMPFGTVLFAVFMLLVVFATLTSAFSMLETVIAATIRQDER
                     KRKKHTWLIGTAIFIVGIPSALSFGVWGEFKVFGKTIFDLWDYVISAVIMPVGALGVA
                     VFTAWIQDKQSVLKDAGAGSTVPRAVLLLWLNTLRYLAPIAIIIVFVNSLDIL"
BASE COUNT          267 a          345 c          394 g          445 t
ORIGIN      
        1 tatcttcaca tttcttaata aattttatga gtaaccatac ttcttggtcg tccaaaatcg
       61 gtttcgtgct tgctgcggcg ggttcggcca tcggtttggg cgcgatttgg aaattccctt
      121 atacggcggg caccaacggc ggcgcggtgt ttttcctgct gtttttgata tttactatct
      181 tggtcgccct gcccgttcag cttgccgaat tttatatcgg gcgcacgggc ggtaaaaatg
      241 ccgtcgattc cttcagggct ctgcgtccgg gtacgcaatg gctttgggtc gggcgcatgg
      301 gcgttgccgc ctgctttatt ttgctgtcgt tttacagcgt ggtcggcgga tgggtattga
      361 attatgtcgt ccacagtttt acaggggcaa tccatgcggg agcggacttt gaagccctgt
      421 tcggcacaac gatttccaat ccggcaggtt cgctgtccta tcaggcactg tttatgctga
      481 ttacggtttg ggtggtcaaa ggcgggattt cagacggcat cgaaaaggca aaccgttatc
      541 tgatgccggg gctgtttatc ctctttattg cgctggcaat ccgttcgctg acgctgccgg
      601 gtgcaatgga gggcgtgtct ttcctgctca aaccgaattg gtcgtacttt aaagccgata
      661 cgatgattac ggctttaggc caggcgtttt ttgccctgag catcggcgtt tccgccatga
      721 ttacctacgc ttcatatttg ggaaaagatc aggatatgtt ccgctcgggg catacgatta
      781 tgtggatgaa cctcttggtt tcgctgttgg caggtttggt gatttttccg gcggtgttcg
      841 ccttcggttt tgaaccgagc caggggccgg gattgatttt tatcgtattg ccggcggtgt
      901 ttatgaaaat gccgttcggt acggttttgt ttgcggtatt tatgctgctg gtcgttttcg
      961 ccacgctgac ttcggcattt tcgatgttgg aaacggtcat cgccgcaacc atccgccaag
     1021 acgagcgcaa acgcaaaaaa cacacttggc ttatcggcac ggccattttc attgtcggca
     1081 tcccatccgc gctgtctttc ggcgtatggg gtgagtttaa ggttttcggc aaaaccattt
     1141 ttgatttgtg ggactatgtt atttccgccg tcattatgcc tgtcggcgcg ttgggcgttg
     1201 ccgtatttac cgcctggatt caggacaagc agtctgtgtt aaaagatgcc ggcgcgggca
     1261 gcaccgtacc acgggcagtg ctgctgctgt ggctgaatac cttgcgctac cttgccccga
     1321 ttgccattat tattgttttc gtcaattctt tggacatcct ttaaaagcca tccaaacagc
     1381 aaaaatgccg tctgaaagcc tttcagacgg catttttgct tcaggttcag cctatttcgt
     1441 tcaaagtata g
//
LOCUS       DAXHPV010000235         1440 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.235, whole genome shotgun sequence.
ACCESSION   DAXHPV010000235 DAXHPV010000000
VERSION     DAXHPV010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1440)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1440)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1440
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.235"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(395..1318)
                     /gene="lpxC"
                     /locus_tag="ACFM6C_002016"
     CDS             complement(395..1318)
                     /gene="lpxC"
                     /locus_tag="ACFM6C_002016"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HFC6159402.1"
                     /translation="MLQRTLAKSISVTGVGLHSGERVALTLHPAPENSGISFRRTDLD
                     GEMGEQIKLTPYLINDTRLSSTIVTDKGVRVGTIEHIMSALSAYGIDNALIELNAPEI
                     PIMDGSSLPFIYLLQDAGVVDQKAQKRFLKILKPVEIKEAGKWVRFTPYDGFKVTLTI
                     EFDHPVFNRSSPTFEIDFAGKSYIDEIARARTFGFMHEVEMMRAHNLGLGGNLNNAIV
                     IDDTDVLNPEGLRYPDEFVRHKILDAIGDLYIVGHPIVGAFEGYKSGHAINNALLRAV
                     LADETAYDRVEFADSDDLPDAFHELNIRTCG"
BASE COUNT          349 a          355 c          364 g          372 t
ORIGIN      
        1 agattttacg ttctggattc ccactttcgt gggaatgacg gcatcagtct gccgtttaca
       61 gcacggtttc tttagatttt acgttctaga ttcccgcctg cgcgggaatg acgaatccat
      121 ccatacgaaa acctgcacca cgtcattccc acgaacctac atcccgtcat tcccacaaaa
      181 acagaaacct caaatcccgt cattcccgcg caggcgggaa tccagacttg tcggtgcgga
      241 cgcttatcgg ataaaacggt ttcttgagat tccgcgtcct ggattcccac tttcgcggga
      301 atgacgaatt ttaggtttct gattttggtt ttctgttttt gtaggaatga tgaaatttta
      361 agttttagga atttaccgga aaaaacagaa agcgttatcc acaagttctg atgttcagct
      421 cgtgaaatgc gtcgggcaaa tcatcgctgt cggcaaattc cacccggtcg taagccgttt
      481 cgtctgccaa aactgcgcgc aagagtgcgt tgttgatggc gtgtcccgat ttgtagcctt
      541 caaacgcgcc gacaatcgga tgtccgacga tatacaaatc accgatggca tcaaggattt
      601 tgtggcgcac aaactcatcg ggatagcgca agccttcagg attcaggaca tccgtgtcgt
      661 caatcacgat ggcgttgttc aaattgccgc ccaaacccag attgtgggcg cgcatcattt
      721 ccacttcgtg cataaagccg aaagtgcgcg cgcgcgcgat ttcgtcgatg taggatttgc
      781 cggcgaaatc gatttcaaaa gtgggcgagc tgcggttgaa aaccggatgg tcgaattcga
      841 tggtcagcgt taccttaaag ccgtcatacg gcgtaaagcg cacccatttg cccgcttctt
      901 tgatttcgac aggcttgagg attttcaaaa aacgcttttg cgccttttga tcgaccacgc
      961 ccgcatcttg caaaaggtaa ataaacggca ggctggagcc gtccataatc gggatttcgg
     1021 gtgcgttcag ctcaatcagc gcgttgtcga taccgtaggc ggacagcgcg gacataatgt
     1081 gttcgattgt gccgacgcgc acgcctttgt cggtaacgat ggtggaggaa aggcgggtat
     1141 cgttgatcaa ataaggggtc agcttgattt gttcgcccat ctcgccgtcc aaatcggtac
     1201 ggcggaagga aatcccgctg ttttcaggcg cggggtgcag ggtcagcgcg acgcgttcgc
     1261 ccgaatgcag cccgactccg gtaacgctga tggatttcgc caaagttctt tgcagcataa
     1321 accgcttcct tatcaatggg gtaagttttg gaataatacg ataaaaccgg aaaaacaggc
     1381 tatgtttttc catagtattt gccaatgtat ccgttttcaa tacgtaagcc gcataaaaat
//
LOCUS       DAXHPV010000236         1434 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.236, whole genome shotgun sequence.
ACCESSION   DAXHPV010000236 DAXHPV010000000
VERSION     DAXHPV010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1434
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.236"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..>1434
                     /locus_tag="ACFM6C_002017"
     CDS             <1..>1434
                     /locus_tag="ACFM6C_002017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF637 domain-containing protein"
                     /protein_id="HFC6159403.1"
                     /translation="IKSSIHTETVSSSKSTLWQKQAGRGSNIETLQLPSFTGPVAPVL
                     SAPGGYIVDIPKGNLKTEIEKLAKQPEYAYLKQLQTAKNVDWKQVQLAYDKWDYKQEG
                     LTGAGAAIVVIIVTALTYGYGAAAAGSVTAAGSSTAAAATTTAAATTTVSTAAAMQTA
                     ALASLYSQAAVAIINNKGDVGKALKDLGTSDTVKQIVTSALTAGALNQMGADIAQLNS
                     KVRTELFSSTGNQTIANLGGRLATNLSNAGISAGINTAVNGGSLKDNLGNAALGALVN
                     SFQGEAASKIKTTFSDDYVAKQFAHALAGCVSGLVQGKCKDGAIGAAVGEIVAESILG
                     GRNPATLSDAEKHKVISYSKIIAGSVAALNGGDVNTAANAAEVAVVNNALNFDSTPTN
                     AKKHQPQKPDKTALEKIIQSIMPAHAAGAMTNPQDKDAAIWISNIRNGITGPIVITSY
                     GVYAAGWTAPLIGTAGKLAISTCMANPS"
BASE COUNT          421 a          355 c          372 g          286 t
ORIGIN      
        1 atcaaaagca gcatccacac agaaaccgtg agcagcagca aatctactct atggcaaaaa
       61 caggcaggac ggggcagtaa catcgaaacc ttgcaattgc cgagtttcac cggtcccgtt
      121 gcgcccgtac tgtccgcacc cggcggttac attgtcgata ttcccaaagg caatctgaaa
      181 accgaaatcg aaaagctggc caaacagccc gaatacgcct acctgaaaca gcttcagacg
      241 gccaagaacg tcgattggaa acaggtgcag ctggcctacg acaaatggga ctataaacag
      301 gaaggcttga ccggagccgg tgcagcgatt gtggtgatta ttgtaaccgc tctaacttat
      361 ggatacggag cggctgcagc gggtagcgta actgccgcag gaagtagtac agccgcagct
      421 gcaacaacga cagcggcagc aactaccact gtttctactg cagctgccat gcaaaccgca
      481 gctttagcct ccttgtatag ccaagcagct gtagccatca tcaataataa aggcgatgta
      541 ggcaaagcat taaaagatct cggcaccagt gatacggtca agcagattgt tacttccgca
      601 ctgacggcgg gtgcattaaa ccagatggga gcagatattg cccaattgaa cagcaaggta
      661 agaaccgaac tgttcagcag tacgggcaat caaaccattg ccaaccttgg aggcagattg
      721 gccaccaacc tcagcaatgc aggtatctca gctggtatca ataccgccgt taacggcggc
      781 agcttgaaag acaacttagg caatgccgca ttgggagcat tggttaatag cttccaaggg
      841 gaagccgcca gcaaaatcaa aacaaccttc agcgacgatt atgttgccaa acagttcgcc
      901 cacgctttgg cgggttgtgt tagcggactg gtacagggaa aatgtaaaga tggggcaatt
      961 ggcgcagcag ttggggaaat cgtagctgaa tccatacttg gcggcagaaa ccctgctaca
     1021 ctcagcgatg cagaaaagca taaagttatc agttactcga agattattgc gggcagcgtg
     1081 gcggcactca acggcggcga tgtgaatact gcggcgaatg cggctgaggt agctgtggtg
     1141 aataatgctt tgaattttga cagcacccct accaatgcga aaaagcatca accgcagaag
     1201 cccgacaaaa ccgcactgga aaaaatcatc caaagtatta tgcctgcaca tgcggcaggt
     1261 gcgatgacta atccgcagga taaggatgct gccatttgga taagcaatat ccgtaatggc
     1321 atcacaggcc cgattgtgat taccagctat ggagtttatg cagcaggttg gacagctccg
     1381 ctgatcggta cagcgggtaa attagctatc agcacctgca tggctaatcc ttct
//
LOCUS       DAXHPV010000237         1416 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.237, whole genome shotgun sequence.
ACCESSION   DAXHPV010000237 DAXHPV010000000
VERSION     DAXHPV010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1416
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.237"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            188..1372
                     /gene="ubiM"
                     /locus_tag="ACFM6C_002018"
     CDS             188..1372
                     /gene="ubiM"
                     /locus_tag="ACFM6C_002018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016709 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen, NAD(P)H as one donor, and incorporation
                     of one atom of oxygen [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-demethoxyubiquinol-8 5-hydroxylase UbiM"
                     /protein_id="HFC6159404.1"
                     /translation="MSLHSDILVVGAGPAGLSFAAELAGSGLKVTLIERSPLTVLQNP
                     PYDGREIALTHFSREIMQRLGMWDNIPENEIYPLRDAKVLNGRSDYQLHFPQPTEARG
                     EPADCLGYLISNHNIRRAAYEVVSQLDNVSILTDTVVKEVKTSDNEAQVILENGKILT
                     ARLLLAADSRFSQTRRQLGISSDMHDYSRTMFVCRMKHTLSNRHTAYECFHYGRTIAL
                     LPLEEHLTNTVITVDTDKINSVQNLSPEELAASVKEQLKGRLGDMELVSSIHHYPLVG
                     MIAKRFYGKRSALIGDAAVGMHPVTAHGFNLGLSSADILAKLILEAEQRGQDIGAASL
                     LEKYSSKHMLHAHPLYHGTNMMLKLFTNETAPAKLLRGLVLRAGNNFPPLKKLITKQL
                     TG"
BASE COUNT          378 a          409 c          311 g          318 t
ORIGIN      
        1 ataccccaca cccgatttga tacacattaa gctgaaagta aaaatccgca tacaccctcc
       61 cctgcatatt tcttcaacag tgggttttga tataatcgcc tatctgttac agatagttca
      121 aacggcattc aaacccttac aaataccgtc tgaaatcatc ggcatccgtc tatgcaaagg
      181 atattttatg agtttacaca gcgacatcct cgtcgtcggc gcaggcccgg cgggtttaag
      241 ttttgcagcc gaacttgccg gcagcggttt gaaagttacc ctgatcgaac gcagcccact
      301 gactgttctg caaaatcctc catatgacgg acgcgaaatc gccctgaccc atttttcccg
      361 cgaaatcatg cagcgtttgg gtatgtggga caacattccc gaaaacgaaa tctacccttt
      421 gcgcgatgcc aaagtgctga acggacgttc cgactaccag ctccactttc cccaaccgac
      481 tgaagcgcgc ggcgaacctg ccgactgttt gggctatctg atttccaacc acaatatccg
      541 ccgcgccgcc tatgaagtcg tatcacaact cgacaatgtc agcattctga ccgatacggt
      601 tgtcaaagaa gtcaaaacat ctgacaacga agcacaagtc attttggaaa acggcaaaat
      661 cctgactgca cgcctgcttt tggcggcaga cagccgtttc tcacaaaccc gccgacaact
      721 cggcatttct tcagatatgc acgactacag ccgaaccatg ttcgtctgcc gcatgaaaca
      781 tactctttcc aatcggcata ccgcttacga atgcttccat tacgggcgca ccatcgcact
      841 gctgccactg gaagaacacc tgaccaatac cgtcattacc gtcgataccg ataaaatcaa
      901 cagcgttcaa aatctttcgc ccgaagaatt ggcggcaagc gtaaaagaac agctcaaggg
      961 caggctcggc gatatggaac tggtcagcag catccaccat tacccacttg tcggtatgat
     1021 tgccaaacgt ttctacggca aacgcagcgc gctgatcggc gatgcggctg tcggtatgca
     1081 ccccgttacc gcacacggtt tcaacttggg tctgtccagc gcagatattt tggcaaaact
     1141 gatactcgaa gccgagcagc gcggtcagga catcggcgcg gcttccttgt tggaaaaata
     1201 cagcagcaaa catatgctgc acgcccatcc gctttatcac gggaccaata tgatgctgaa
     1261 gctgtttacc aacgaaaccg cgccggcaaa actgctgcgc ggtttggtat tgcgtgccgg
     1321 caacaacttc ccgccgctga aaaagctgat taccaaacaa ctgaccggtt gaaaactgcc
     1381 gaaatgccgt ctgaaacgtt tcagacggca tttttg
//
LOCUS       DAXHPV010000238         1410 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.238, whole genome shotgun sequence.
ACCESSION   DAXHPV010000238 DAXHPV010000000
VERSION     DAXHPV010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1410
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.238"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            665..1171
                     /locus_tag="ACFM6C_002019"
     CDS             665..1171
                     /locus_tag="ACFM6C_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009289 - pilus [Evidence IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
                     /protein_id="HFC6159405.1"
                     /translation="MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAI
                     LLAEGQKSAVTEYYLNHGEWPANNSSAGVATSASDIKGKYVQSVEVKNGVITAEMKSS
                     GVNKEIQGKKLSLWAKRQAGSVKWFCGQPVTRAANNTADDAVKADTNGKIDTKHLPST
                     CRDASSAG"
BASE COUNT          453 a          394 c          264 g          299 t
ORIGIN      
        1 atttcatcat tcccacaaaa acagaaaacc aaaaacagaa acctaaaatt cgtcattccc
       61 gcaaaagcgg gaatccagaa cgtaaaatct caagaaaccg ttttcccgat aagtttccgt
      121 accgacaagg ctggattccc gcctgcgcgg gaatgacgaa gccatccgca cggaaacctg
      181 ccgcgatgat tcaactgccg tttgcacagg aacaccacgc gccgatttca atcactttcc
      241 aagaaaacgg aaatttttaa aaattaaatt taaaatttcc cacccaaccc accctatgct
      301 accgcgcaaa ttcaaaaatc tcaaattccg acccaatcaa cacacccgat gccccatgcc
      361 aatagaaata ccccacgcca ataaaaaagt gccgaaaatc ggcactaaaa ctgacaattt
      421 tcaacactac taacaaaaaa cggtaacccc ctgcttcctc aaaccacgcc caaacgaaag
      481 aaaatgtaaa ataaaaacaa ccacataaag ataaacgcat aaattttcac ctcaaaacac
      541 aaacttgata ccaatcttgc tttataatac acaggtatcg caacaaaata ccgatggtca
      601 aatacattgc ataatgccga tggcgtaagc ttgaggcatt tcctttccaa ttaggagtaa
      661 ttttatgaac acccttcaaa aaggttttac ccttatcgag ctgatgattg tgattgccat
      721 cgtcggcatt ttggcggcag tcgcccttcc tgcttatcaa gactacacag cccgcgcaca
      781 agtttccgaa gccattcttt tggccgaagg tcaaaaatca gccgtcacag agtattacct
      841 gaatcacggc gaatggcccg ccaacaacag ttctgccggc gtggcaacct ccgcctccga
      901 catcaaaggc aaatatgttc aaagcgttga agtcaaaaac ggcgtcatta ccgccgaaat
      961 gaaatcaagc ggcgtaaaca aagaaatcca aggcaaaaaa ctctccctgt gggccaagcg
     1021 tcaagccggt tcggtaaaat ggttctgcgg acagccggtt acgcgcgccg ccaacaacac
     1081 cgccgacgac gccgtcaaag ccgacaccaa cggcaagatc gacaccaagc acctgccgtc
     1141 aacctgccgc gacgcttcat ctgccggtta aggcaaatta taccataaat tttaaataaa
     1201 tcaagcggta aatgattttc cacggccact cggattaatc cgggtggctt cctttttaaa
     1261 ggtttgcaag gcaagcgggg tcgtccgttt tggtggaaat aatatatcga ttgcgcttca
     1321 aggctctgcg cgtacctcat tgccgcccgt ttaaacacgg ggtttatctg acaggcgcgc
     1381 aatccgccct ctcatttacc gaacaagcgg
//
LOCUS       DAXHPV010000239         1251 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.239, whole genome shotgun sequence.
ACCESSION   DAXHPV010000239 DAXHPV010000000
VERSION     DAXHPV010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1251
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.239"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            234..1187
                     /locus_tag="ACFM6C_002020"
     CDS             234..1187
                     /locus_tag="ACFM6C_002020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
                     /protein_id="HFC6159406.1"
                     /translation="MGFLIGLSRNLTRFTALVILLASAVAFIGPASFAWVKGDVQVLV
                     LGIIMLGMGMTLGREDYRILAQRPLDVFIGAAAQYTVMPLLAIGIAKLFDLSPGLTLG
                     LVLVGTCPGGVSSNIMSFLAKGDVAFSVGMTTVSTVLAPAVTPLWMTCLVGQTVDMDG
                     WGMFRFMLLVTLLPVVLGSAANILLHGKHWFENVRAVMPGVAVLAFACIVGGVASVHG
                     HRFAESALVMVLAIAVHNIAGYVSGYYAAALFGMDTAKKRTLAIEVGVQNAGLATGLS
                     AKFFPGNAESAVAAAVACVWHSVSGTVLGNLFALWDKRRDA"
BASE COUNT          196 a          268 c          435 g          352 t
ORIGIN      
        1 accggatgat tcgggctaaa taattcctga ttctttggat atagccaacg gtatgcctgc
       61 tgatgccgtc agaaagggct tgatgggcgt ttgcggttcg ggttaatatt tgtgctgtat
      121 ctgttaattc cggttagtaa aatggggcgg ggacgatgag tggccgtcgg tcggttttgc
      181 acgggcggta ataatgtccg gcgcaaggtg cgccgtttcg ggaggggtgt gtgatgggtt
      241 ttctgattgg tttgagccgc aacctgacgc ggtttacggc tttggtcatt ttgcttgcgt
      301 cggcggttgc gtttatcgga ccggcttcgt ttgcgtgggt taagggcgat gttcaggtct
      361 tggtgctggg catcattatg ctgggtatgg ggatgacttt gggcagggag gactaccgga
      421 ttttggcgca gcgtcctttg gatgtgttta tcggtgcggc ggcgcaatat accgtgatgc
      481 cgttgctcgc catcggtatt gccaagctgt tcgacctttc gccggggctg actttggggc
      541 tggtgttggt ggggacgtgt ccgggcggcg tgtcgtccaa cattatgagt ttccttgcca
      601 aaggcgatgt ggcgttttca gtcggtatga cgacggtgtc tacggtgctg gctccggccg
      661 ttacgccttt gtggatgacc tgcctggtcg gtcagacggt ggatatggac ggttggggga
      721 tgttccggtt tatgctgctg gtcacgcttt tgccggtggt gctgggttcg gcggcaaata
      781 tcctgctgca cggaaaacat tggtttgaaa atgtccgtgc cgttatgccg ggcgtggcgg
      841 tattggcatt tgcctgcatt gtcggcggtg tggcttcggt tcacggacac cgttttgccg
      901 aatcggcgtt ggtaatggtg ttggcgattg cggtacacaa tatcgccggc tatgtgtcag
      961 gctattacgc cgccgcgctg tttggtatgg atacggcaaa aaaacgcacc ttggcaatcg
     1021 aagtcggcgt gcagaatgcc ggtttggcaa cgggattgag cgcgaaattt tttccgggca
     1081 acgccgaatc ggcggttgcg gcggcggtcg cctgcgtgtg gcattcggtt tcggggacgg
     1141 tattgggcaa cttgttcgct ctgtgggaca agcgtcggga cgcttagtcg ggcgtgtccg
     1201 aaccgtccca cgatatatag tggattaact ttaaaccggt acggcgttgc c
//
LOCUS       DAXHPV010000240         1245 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.240, whole genome shotgun sequence.
ACCESSION   DAXHPV010000240 DAXHPV010000000
VERSION     DAXHPV010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1245)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1245)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1245
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.240"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..609
                     /locus_tag="ACFM6C_002021"
     CDS             <1..609
                     /locus_tag="ACFM6C_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159407.1"
                     /translation="SGCTVMVTQAAEAGAGIATGAVTVGNAWEAPVGALSKAKAAKQA
                     APKETINNLANLAKAEQQILFRIAQRDTQLDAWKTGFNNRVRKGAGLLDASNIPITIN
                     GKTIKPVQAISLKGAPVYSGVSEQEIFALYRQMTGQNPNFRVLPDGRLANGIISTGEW
                     AGTKIALRNFSKTENSTQARWTLDLQNPPSFIKGTKLELKFQ"
     gene            628..1002
                     /locus_tag="ACFM6C_002022"
     CDS             628..1002
                     /locus_tag="ACFM6C_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF596 domain-containing protein"
                     /protein_id="HFC6159408.1"
                     /translation="MDEKQKIKILDFQIDLSSIFNSYKNQMGINIQDKNLKNNFCSFM
                     EELLNDGSIRLHDYTDGIGIPLTGTSKEQVQKLKDIWPTLEDAQAIWPEDPWYYLEWL
                     WWDIACPIDLADLPNIDIYEQA"
BASE COUNT          401 a          235 c          279 g          330 t
ORIGIN      
        1 tctggttgta ctgtcatggt cactcaggct gccgaagcgg gcgcgggaat cgccacgggt
       61 gcggtaacgg taggcaacgc ttgggaagcg cctgtggggg cgttgtcgaa agcgaaggcg
      121 gctaagcaag ctgctcctaa agaaacaata aacaatttgg caaatttagc caaagcagaa
      181 cagcagattt tattccgtat tgcccaacgc gatacgcaac tggatgcatg gaagacggga
      241 tttaacaata gagtaaggaa aggagcaggc ttgcttgatg caagtaatat tccgataacc
      301 attaacggaa aaaccatcaa acctgtacaa gccataagct taaagggagc acccgtttac
      361 agcggcgtaa gcgaacagga gatttttgcg ctttatcggc agatgactgg ccagaatccg
      421 aattttagag ttttgcctga cggaagatta gcaaatggca ttatcagtac tggagaatgg
      481 gcaggaacaa aaattgcatt aagaaatttt tcaaaaacag agaattcaac tcaagcacga
      541 tggacattag atttgcagaa tcctccatca tttattaaag gtactaaatt ggagcttaaa
      601 ttccaataat ttacaaagga ttttaccgtg gatgagaaac aaaaaattaa gattcttgat
      661 tttcaaatcg atttatcctc aatttttaac tcttataaaa atcaaatggg tattaatatt
      721 caagataaaa acttaaaaaa caatttctgt tcttttatgg aagaactgtt aaatgacggt
      781 tcaatccgtt tacatgatta taccgacggt atcggaattc ctctaactgg aacttcaaaa
      841 gaacaagtgc agaaattgaa agacatatgg cctactttgg aagatgccca agcaatatgg
      901 cctgaagacc cttggtatta cttagaatgg ctttggtggg atattgcgtg tccaatagat
      961 ttggccgatt tgccgaatat tgatatttat gagcaagcgt aggtatggtt agccgccttt
     1021 agcggcgtaa ccgtacgcat atcagcaaac tttataaaat aacaaggccg tctgaaatct
     1081 gtttttcaac tttttcagac ggccttgcaa cttggcattt cattcgtacg gttacgccgc
     1141 taaaggcggc taaccgtacc tacgagctct gataaaaatg atttatggaa gcaagctgta
     1201 gcctgcatga aacctaaaat ccatgcgtaa ggtgtgtgct tcagc
//
LOCUS       DAXHPV010000241         1233 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.241, whole genome shotgun sequence.
ACCESSION   DAXHPV010000241 DAXHPV010000000
VERSION     DAXHPV010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1233)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1233)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1233
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.241"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            41..373
                     /locus_tag="ACFM6C_002023"
     CDS             41..373
                     /locus_tag="ACFM6C_002023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159409.1"
                     /translation="MQILSFQPDIAERMLEGTEGESVHRDAQFVQTANGYWIAWHEGV
                     AALLAPDTPPGIPCFWVEGAESLEELCVMVERGEFDEVEEFDGDDDEWLETAQGCGHH
                     GDACACGH"
     gene            705..1214
                     /locus_tag="ACFM6C_002024"
     CDS             705..1214
                     /locus_tag="ACFM6C_002024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003662333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxyl methyltransferase
                     family protein"
                     /protein_id="HFC6159410.1"
                     /translation="MTMILSILSLFFIIRLLFLAVSIKHEKALIAKGAKQYGKTNSTL
                     LAAVHTLYYLACFVWVWLSDTAFNGISLIGTLTVMASFVILSLIIKQLGEIWTVKIYI
                     LPNHQINRSWLFKTFRHPNYFLNIIPELIGIALLCQAWYVLLIGLPIYLLVLFKRIRQ
                     EEQAMATLF"
BASE COUNT          325 a          228 c          299 g          381 t
ORIGIN      
        1 gccttgtttt gacggaaaac catcatataa aggaacactt atgcagattt tatcttttca
       61 gccggacatt gcggaacgta tgctggaagg tacggaagga gagtcggttc atcgggatgc
      121 gcagttcgtt caaacggcaa acggctattg gattgcgtgg catgaaggcg tagcggcact
      181 gcttgcgccc gatacgccgc cggggattcc ctgtttttgg gtggaaggcg cggaaagcct
      241 tgaagagttg tgcgtcatgg tggaacgcgg cgagtttgac gaagtggaag agtttgacgg
      301 cgatgacgac gaatggctcg aaacggcaca gggttgcggg caccacggcg acgcttgcgc
      361 ctgcggacat taaaggcatt gcaggcttgc cgcaaggggg gcaaggcttt gccgtttttt
      421 aaataatcgg tggattgcat ctgtttgcaa tgggctgaac gcttcccttt gtattttatt
      481 gaataaaaaa acttatcttg gtattataat taaggcagca tcaattattt tgggatggca
      541 ataaacgcaa agcattgatt tgcgccgatt gcagacttat tatagcaggt tgcggcgcgg
      601 acttaatggg aattgtttat agagcatgat ggtctgaaac atcattaatt aaaaatacca
      661 ttaatccgat ttatatttat ttcaatttca atggaaaaac atcaatgaca atgattttaa
      721 gcattttaag cctgtttttt atcatcagac tgttattttt agccgtctct attaaacatg
      781 aaaaagcctt gattgccaaa ggggcgaaac aatacggaaa aaccaattcc acgctgcttg
      841 cggcagttca tacgctttat tatttggcgt gttttgtttg ggtatggctt tctgacactg
      901 cttttaatgg catatccttg attggtacgc tgacggtgat ggcttcgttt gtgatattgt
      961 cattgattat taagcagttg ggggaaattt ggacggttaa aatctatatt ttaccaaatc
     1021 atcaaattaa tcgttcgtgg ttgtttaaaa cattccgcca ccccaattat tttttaaaca
     1081 tcatacccga actgattggc atcgccttat tatgtcaagc gtggtatgtt ttattgattg
     1141 gcctgcccat ttatttgctg gtcttattta agcgtatccg acaagaagaa caggcgatgg
     1201 caacactttt ttaacccgtt tcatcaatta tag
//
LOCUS       DAXHPV010000242         1220 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.242, whole genome shotgun sequence.
ACCESSION   DAXHPV010000242 DAXHPV010000000
VERSION     DAXHPV010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1220)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1220)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1220
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.242"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(45..170)
                     /locus_tag="ACFM6C_002025"
                     /pseudo
     CDS             complement(45..170)
                     /locus_tag="ACFM6C_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951170.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
     gene            complement(500..910)
                     /locus_tag="ACFM6C_002026"
     CDS             complement(500..910)
                     /locus_tag="ACFM6C_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159411.1"
                     /translation="MKIYNLDNIITSSALSLYKSTWVKLDLISCAKFIIEGTDFTFDW
                     DEGIENWIVFFHKNKVIGYLCAKLPFAILDNEQLKNQLYHKYPHVLTLQIKNIETEKI
                     SLNVNICRLTLCPSFHDEHDTLVCSVQDFYVNTV"
     gene            complement(914..>1220)
                     /locus_tag="ACFM6C_002027"
     CDS             complement(914..>1220)
                     /locus_tag="ACFM6C_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159412.1"
                     /translation="CCREPITGQCFLRHKPDASSLDKIDSKSLFKSDVDAEKATLDAA
                     RYADKHNLWDSQNKAKVPTNDVVGYTDGKPTHIINIYRRKPNKDGIRPVHITPGKER"
BASE COUNT          355 a          228 c          200 g          437 t
ORIGIN      
        1 ttcattttgt tttccttggt agcaagcggt tatggtcgtg tgaatcaagg ttgcccttgt
       61 ctatgttgtc gcactacttc atcgctgtat ccatacccct catgactgtt atcagcctct
      121 acggatgggg cggagttacc cgtatgattg ccgtatggtc ggatacttgt atccgacaaa
      181 aatatttgac gcatctatcg tttccgaaat gccgctgttg gaaaatgtcg gattcgagaa
      241 tccgacctac ggttgctgaa caatgttttg tagaacttgc tcaaaatcca tgtttcgcca
      301 ttttccttta tatataccta atacagcacg ggttacgatt tcgttttaag tcataaatag
      361 ccatttacgt cctctgctaa ttttcagcga gtagattggg ttaccaaacc caacaaaaaa
      421 gcagcctgaa aaatttcagg atgcttgttt tatgtttttt atcaatgaat taggttttaa
      481 tccagcctgc gcttgctagt taaacagtat ttacataaaa atcttgtact gaacaaacaa
      541 gcgtatcatg ttcatcatga aatgatgggc ataacgttaa tctacaaatg tttacattta
      601 aagatatttt ttcagtttca atatttttaa tttgtaaggt taatacatga ggatatttgt
      661 gatatagctg attttttaat tgttcgttgt ctaatatagc aaaaggtaat tttgcacaca
      721 aataaccaat aactttgttt ttatgaaaaa aaactatcca attttcaatt ccttcatccc
      781 aatcaaaagt aaaatccgtt ccttctatga taaatttagc acaagatatt aaatctaact
      841 taacccaagt ggatttatac agactcaatg ctgatgaagt tataatatta tctaaattat
      901 aaattttcat aaatcaacgt tccttacctg gtgttatatg cacaggtcta atcccatctt
      961 tattcggctt tctacgataa atgttaatta tatgtgtcgg ttttccgtct gtatagccaa
     1021 ctacgtcgtt cgttggaact tttgccttat tttgactatc ccataaatta tgtttatctg
     1081 catatctagc agcatctaat gtagcttttt ccgcatcaac atctgattta aataaacttt
     1141 tgctatctat cttgtctaga ctagatgcat caggtttgtg tcgtaaaaag cactgtcctg
     1201 taataggctc gcggcagcaa
//
LOCUS       DAXHPV010000243         1210 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.243, whole genome shotgun sequence.
ACCESSION   DAXHPV010000243 DAXHPV010000000
VERSION     DAXHPV010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1210)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1210)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1210
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.243"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            23..1126
                     /gene="dnaN"
                     /locus_tag="ACFM6C_002028"
     CDS             23..1126
                     /gene="dnaN"
                     /locus_tag="ACFM6C_002028"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HFC6159413.1"
                     /translation="MLILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTK
                     LLATDLEIQIDTAGPEGGAGDFRITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAG
                     KSRFALQTLPAADFPMMNVGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLL
                     MQVEGSQLRLVATDGHRLAYAACAIDADLPHAEVILPRKTVLELFKLLNNPDDPIQIE
                     LLDKQVRFQCNGTTIVSKVIDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILAN
                     EKFRGARLFLQSGLLSVVCSNNEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS
                     DDMQLAFGDANRSTLFTVPNNPNFKYIVMPMRI"
BASE COUNT          271 a          337 c          336 g          266 t
ORIGIN      
        1 aaaccgattt aaaggagcga acatgttgat tttacaagcc gagcgcgaca gcctgctcaa
       61 gccgctgcaa gccgttaccg gcatcgtcga acgccgccac accctgccca tcctgtccaa
      121 cgtcctgatt gagggaaaag gcggtcagac caaactcttg gcaaccgatt tggaaatcca
      181 aatcgacact gcgggtcccg agggcggcgc gggcgacttc cgcatcacta ccaatgccaa
      241 gaaatttcag gacattttgc gcgcgctgcc tgccggtgcg ctggtgtcgc tggattggga
      301 cgacagccgt ctgacgctga aggcgggcaa atcgcgtttt gccctgcaga ccctgcctgc
      361 cgccgatttt ccgatgatga atgtcggcga ggacatcagc gcgactttct cgctggagca
      421 ggagcgtttc aaaaccatgc tgtcgcaagt gcagtacagc atggcggtgc aggacatccg
      481 ctattatctc aacggtctgc tgatgcaggt tgagggcagc cagttgcgcc ttgtggcgac
      541 cgacggacac cgccttgcct atgcagcctg cgcgattgat gcggatttgc cgcacgccga
      601 agtgattttg ccgcgcaaaa cggtgctgga actgttcaaa ctgttgaaca accccgacga
      661 tccgattcaa atcgagctgc tggacaaaca ggtgcgtttc caatgcaacg gcacgaccat
      721 cgtcagcaag gtcatcgacg gcaaattccc cgatttcaac cgcgtgattc ctttggacaa
      781 cgacaagatt ttcgttttgt cccgtgccga acttttgggt gcgctggaac gtgtgtccat
      841 tcttgccaac gaaaaattcc gtggcgcgcg cctgttcctg caatccggcc tgttgagcgt
      901 cgtgtgcagc aacaacgagc aggaagaagc gcgcgaagaa atcgaaatcg cctatcaggg
      961 tggcgaactc gaagtcggtt tcaatatcgg ctatctgatg gacgtgttgc gcaacatcca
     1021 ttccgacgat atgcagcttg ccttcggcga tgccaaccgc tcgacgctgt ttaccgtgcc
     1081 gaacaatccg aatttcaaat atattgtgat gccgatgcgg atttgacggt tttccggaac
     1141 acgatgcccg tattggagat ataccccgaa ccgtgcagac ggattcgggg ttttgttcgg
     1201 ctgtcggaaa
//
LOCUS       DAXHPV010000244         1200 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.244, whole genome shotgun sequence.
ACCESSION   DAXHPV010000244 DAXHPV010000000
VERSION     DAXHPV010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1200)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1200)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1200
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.244"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..570
                     /locus_tag="ACFM6C_002029"
     CDS             <1..570
                     /locus_tag="ACFM6C_002029"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6159414.1"
                     /translation="FHFRKTEKECAVLGTLSRLDTVRAVHLMLDILKKMVDRGMPVRL
                     NIAGIGEEMDNLKTQAKRLGIEDKITFLGGIRDLTGYFKEIDILVNTPHCVGDHGAGV
                     GNNILEAGLYDTPVVTYDMAGISEMVVNGETGYCIPFGDEEAFIAAVDTLVRQPLLRE
                     AMGKRLHAHVAALCSDDEIYRTTMAAYTM"
     gene            590..>1200
                     /locus_tag="ACFM6C_002030"
     CDS             590..>1200
                     /locus_tag="ACFM6C_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6159415.1"
                     /translation="MNITIVAPYCSLPSEPYFNRFWYLAERLSQSHDVLLITSRFRHY
                     DKSFRRPEDAEAASQGRLKVMLLEESGYGKNVSLERVASHYRFVKNFEQWLKNCRPGE
                     QDIVYSAYPLMATNLLLGKHKARLGYKLIVDVQDVWPESFSSVVPFLKKVPHKLLPFA
                     SRANRAYRCADALVAVSQTYLDRAKEANPNVPGEAVYIGTDFAA"
BASE COUNT          287 a          342 c          310 g          261 t
ORIGIN      
        1 tttcatttcc ggaaaaccga aaaagaatgc gccgtactcg gcacgctttc ccgtttggac
       61 accgtccgcg ccgtgcatct gatgttggat attttgaaga aaatggttga ccgaggtatg
      121 cccgtccgcc tcaacatagc gggcatagga gaagaaatgg acaatttgaa aacgcaggcg
      181 aagcgtctgg gcattgaaga caaaattacc ttcctcggcg gcatacgcga cttgaccggc
      241 tacttcaaag aaatcgatat tttggtgaac acgccgcatt gcgtgggcga ccacggtgca
      301 ggtgtcggca acaatatttt ggaagccggc ctttacgaca cgcctgtcgt gacctacgac
      361 atggcgggta tttccgaaat ggtcgtcaac ggagaaacgg gttactgcat ccccttcggc
      421 gacgaagaag cctttatcgc cgccgtagac acgctcgtca gacagccgct gttgcgcgaa
      481 gcaatgggca aaaggttgca cgcacacgtc gccgcactct gttccgacga cgaaatctac
      541 cgtaccacca tggcggcgta taccatgtaa tgccgtctga aagccgccga tgaacatcac
      601 catagtcgcc ccttattgct cgctgccgtc cgaaccgtat ttcaaccgct tttggtatct
      661 ggcagaacga ttgtcgcaat cgcacgacgt gttgctgatt accagccgtt tccgccacta
      721 cgacaaatcc ttcagacggc ccgaagatgc cgaggccgcc tcgcaaggcc gtctgaaagt
      781 catgctgttg gaagaaagcg gctacggcaa aaacgtgtct ttagaacgtg ttgccagcca
      841 ttaccgcttc gtcaaaaatt ttgagcaatg gctgaaaaac tgccggccgg gcgaacaaga
      901 catcgtctat tccgcctatc cgctgatggc aaccaacctg ctgttgggca aacacaaagc
      961 gcgtttgggc tacaaactga ttgtcgatgt gcaggacgta tggccggagt ctttctcctc
     1021 ggtcgtaccg tttttgaaaa aagtaccgca caagctgctg ccctttgctt cacgcgccaa
     1081 ccgtgcctac cgctgcgccg acgcgctggt tgccgtatcg cagacttatc tcgaccgcgc
     1141 caaagaagcc aatccgaacg tacccggcga agccgtctat atcggtacgg attttgccgc
//
LOCUS       DAXHPV010000245         1177 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.245, whole genome shotgun sequence.
ACCESSION   DAXHPV010000245 DAXHPV010000000
VERSION     DAXHPV010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1177)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1177)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1177
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.245"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..478
                     /gene="mafB"
                     /locus_tag="ACFM6C_002031"
     CDS             <1..478
                     /gene="mafB"
                     /locus_tag="ACFM6C_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="polymorphic toxin MafB class 3"
                     /protein_id="HFC6159416.1"
                     /translation="PTARPMQTLDGEMAGGNKPPKPSTQQHPTHSDNNIGLPASYVKP
                     DTSISPTGTIQDRIRWTKSKFPTEKSLNGHFKAHGKEFGDITIEDYQKMASDLLSKQT
                     SDKILGYQTEHRRVRYDINNNIYVLANPKTFKIKTMFKPNLGKKYYDGEFKKDMGN"
     gene            444..650
                     /locus_tag="ACFM6C_002032"
     CDS             444..650
                     /locus_tag="ACFM6C_002032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPCC family cysteine-rich protein"
                     /protein_id="HFC6159417.1"
                     /translation="MMENSKKTWEIDGEIWLHCPVCGTEVMDYDICDVCQWQNTGETN
                     IDGGPNEMTLAEAKEAYAKGLPIR"
     gene            671..1054
                     /locus_tag="ACFM6C_002033"
     CDS             671..1054
                     /locus_tag="ACFM6C_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159418.1"
                     /translation="MMTESHGYLSNNLPVKIINDIIYATQLVEDLVLGKIKIVDFLKS
                     YNNFYYWLGFDELPQSEKIKFLNYLNILSIHKEIQDKTVNRVYTDCFDIDKLHSLGRI
                     TTNECINGIKKIYQKNKLEFDNILK"
BASE COUNT          451 a          186 c          211 g          329 t
ORIGIN      
        1 acctactgcc cgccctatgc agactttaga tggggagatg gcaggtggga ataagccacc
       61 aaaaccaagt acgcagcaac accctacaca ctctgataac aatatcggct tacctgcctc
      121 atatgttaaa cctgatacat ctatttctcc gacaggaaca attcaagacc gcatcagatg
      181 gacaaagtcc aagtttccta ctgagaaatc tttaaatgga catttcaaag ctcatggaaa
      241 agaatttggc gatataacca ttgaagacta ccaaaaaatg gcgtctgatt tgttatcaaa
      301 acagacatcg gacaagatat taggttatca gacggaacat agacgagtgc gctatgatat
      361 caataacaat atctatgttt tggccaatcc aaaaacattc aaaatcaaaa caatgtttaa
      421 accaaactta ggaaagaagt attatgatgg agaattcaaa aaagacatgg gaaattgacg
      481 gagaaatatg gctacattgt cctgtttgcg gaactgaagt tatggactat gatatctgtg
      541 acgtttgtca gtggcaaaat acaggagaaa ctaatataga tggtggccct aatgaaatga
      601 cacttgcgga ggcgaaagaa gcttacgcaa aaggcttacc aatcagataa ataagcacct
      661 agagaaatca atgatgacgg aatcccatgg ttacctatca aataatttac ctgttaaaat
      721 cataaatgat attatttatg caacccagtt agtcgaagat ttggttttag gaaaaataaa
      781 aattgttgat tttttaaaat catataacaa tttttattat tggcttggtt ttgatgagtt
      841 acctcaatct gagaaaataa aatttctaaa ctatctcaat atattaagta ttcataagga
      901 aatacaagat aaaactgtga atagggttta taccgattgt tttgatattg ataaattaca
      961 ttcgcttggc agaattacaa ctaatgaatg tattaatggt ataaaaaaaa tctatcaaaa
     1021 aaacaaatta gaatttgaca atatactcaa ataactagcc tatgttttgt aaaataaaaa
     1081 tattcttgct gagtgtagag ccagagataa aaagatttga tagtagtttg cagttgtaga
     1141 attatataaa caagaaaata gtcagcagcc gtaggtc
//
LOCUS       DAXHPV010000246         1171 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.246, whole genome shotgun sequence.
ACCESSION   DAXHPV010000246 DAXHPV010000000
VERSION     DAXHPV010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1171)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1171)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.246"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            53..1111
                     /gene="dinB"
                     /locus_tag="ACFM6C_002034"
     CDS             53..1111
                     /gene="dinB"
                     /locus_tag="ACFM6C_002034"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HFC6159419.1"
                     /translation="MSSRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICA
                     ASYEARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLS
                     LDEAYLDVTRNFKNIPYAGDVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN
                     GQFVLPPQKVMAFLETLPLGKIPGVGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGR
                     YGYRLYDLARGTDERPVEAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITR
                     KNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCSALLQAAQMLMARVPPQTEDAFRLI
                     GIGVGRLVPKNQQQGLWA"
BASE COUNT          256 a          341 c          327 g          247 t
ORIGIN      
        1 gaatttgccc gatgccggca gtagaatatc ccttttattc tcagcagagc cgatgtcttc
       61 acgcaaaatc atccacatcg acatggacgc attctacgca tcggtagagc tgcgcgaaca
      121 gccgcatttg aaagggcggc cggtggtcgt cgcgtgggag ggtgcgcgtt cggtgatttg
      181 cgccgcatcg tatgaggcac ggcagttcgg gctgcattcc gcgatgtcgg tggcaacggc
      241 gaaaaggctg tgtccgcaag cggtgtatgt gccgccgcat ttcgacttgt accgtcaggt
      301 ttccgcgcag attcacgccg tattcaggcg ttataccgat ttaatcgaac ccctgtcgct
      361 ggacgaagcc tatcttgacg ttacccgtaa tttcaaaaac atcccttacg ccggcgacgt
      421 tgccaaagaa atccgtgccg ccatttttgc ggaaacgggt ttgaccgcct cggcaggcat
      481 cgcgccgaac aagtttttgg cgaaaatcgc gtcggactgg cgcaagccga acgggcagtt
      541 tgtgttgccg ccgcaaaaag tcatggcatt tttggaaacc ctgcctttgg gcaaaatccc
      601 cggagtgggc aaggtaacgc tgaaaaaaat gcagtcgttg ggtatgcgga cggcgggcga
      661 tttgcgccgt ttcgagcgcg gcgagctttt aaaccatttc ggacgctacg gctaccgcct
      721 ctatgatttg gcgcgcggta cggacgaacg ccccgtcgaa gccgaacgcg aacgcctcca
      781 aatctccaca gaaatcaccc tgcccgaaga cctgccgctt gagcaggctg ccggacacct
      841 gccccatctt gccgaagacc tgtggcggca aatcacgcgc aaaaacgtcg aagcccaaag
      901 cgtaacgctc aagctgaaga cctacgattt ccgcatcatc acgcgcacgc tgacttattc
      961 ctccgtattg cccgactgct cagctctgct gcaggctgcg caaatgttga tggcgcgcgt
     1021 cccgccgcag acggaagacg cgttccgcct tatcggtatc ggtgtcggcc gccttgtgcc
     1081 gaaaaatcaa cagcagggct tgtgggcgta aactgattta ccacaccgtc caaaaaacat
     1141 gccgtctgaa cggttttcag acggcatggc t
//
LOCUS       DAXHPV010000247         1122 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.247, whole genome shotgun sequence.
ACCESSION   DAXHPV010000247 DAXHPV010000000
VERSION     DAXHPV010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1122)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1122)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1122
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.247"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(230..1084)
                     /locus_tag="ACFM6C_002035"
     CDS             complement(230..1084)
                     /locus_tag="ACFM6C_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HFC6159420.1"
                     /translation="MFYQILALIIWSSSFIAAKYVYGGIDPALMVGVRLLIAALPALP
                     ACRRHVGKIPREEWKPLLIAAFVNYVLTLLLQFVGLKYTSAASASVIVGLEPLLMVFV
                     GHFFFNDKARAYHWICGAAAFAGVALLMAGGAEEGGEVGWFGCLLVLLAGAGFCAAMR
                     PTQRLIARIGAPAFTSVSIAAASLMCLPFSLALAQSYTVDWNVGMVLSLLYLGLGCGW
                     YAYWLWNKGMSRVPANVSGLLISLEPVVGVLLAVLILGEHLSPVSALGVFVVIAATLV
                     AGRLSHQK"
BASE COUNT          309 a          339 c          294 g          180 t
ORIGIN      
        1 cccgtcattc ccgcgcaggc ggaaatccgg acatccaacg ctgcagcaat ttgtcggaaa
       61 taaccgaaac tcaaaaaacc ggatgcccgc ctgcgcggga atgacgacgc aaagatggtc
      121 gttatttcgg ataaatatcc gtcttttcgt tccggatacc cgctttcgca ggaatggaga
      181 tggaaagatt tcagcctatt cggcaatcat caaataccgc ttcccaactt tatttttgat
      241 gcgacagccg gccggcaacc aaggtggcgg cgatgacgac aaacacgccc aaggcggaca
      301 cgggcgacag gtgttcgccc aaaatcaaaa ccgccagcag cacgccgacg acgggttcga
      361 gcgaaatcaa cagtcccgac acgttggcag gaacacggct catccccttg ttccacagcc
      421 aataggcgta ccagccgcac cccaagccca aatacagcag cgacaatacc atcccgacgt
      481 tccagtccac ggtataactt tgcgccaaag caagcgaaaa cggcaggcac atcaacgatg
      541 cggcggcaat ggaaacagat gtgaatgccg gtgcgccgat gcgtgcaatc agcctttgcg
      601 tcggacgcat agcggcacaa aagcccgcgc ccgccaacaa caccagcagg cagccgaacc
      661 agccgacttc gccgccctct tccgcaccgc ccgccatcag cagcgcgaca ccggcaaatg
      721 ccgccgcgcc gcatatccag tggtaggcac gcgctttgtc gttgaagaaa aagtgtccga
      781 caaacaccat cagcagcggc tcgagtccga caatgaccga tgcgctggcg gcggaagtgt
      841 atttcaaccc gacaaactga agcagcaggg tcagcacata gttgacaaac gccgcaatca
      901 gcaacggctt ccattcctca cgcggaatct tgccgacatg acggcggcag gcgggcagtg
      961 caggcagcgc ggcaattagc aggcgcacgc cgaccatcaa tgcgggatcg atgccgccat
     1021 agacatattt ggcggcaata aacgagctgc tccagataat cagggcaagg atttggtaaa
     1081 acatagtgag tgataaagtc agatggtcat acaaaagtat ag
//
LOCUS       DAXHPV010000248         1076 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.248, whole genome shotgun sequence.
ACCESSION   DAXHPV010000248 DAXHPV010000000
VERSION     DAXHPV010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1076)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1076)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1076
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.248"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..>1076
                     /locus_tag="ACFM6C_002036"
     CDS             <1..>1076
                     /locus_tag="ACFM6C_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159421.1"
                     /translation="QDGISQANELRTLEELGIQSLDLAYKDVNKNLGNGNTLAQQGSY
                     TKTDGTTAKMGDLLLAADNLHSRFKDKVELTAEQAKAANLAGIGRLRDLREAAALSGD
                     LANMLKAYSAAETKEAQLALLDNLIHKWAETDSNWGKKSPMRLSTDWTQTANEGIALT
                     PSQVAQLKKNALVSLSDKAKAAIDAARDRIAVLDAYTGQDSSTLYYMSEEDALNIVKV
                     TNDTYDHLAKNIYQNLLFQTRLQPYLNQISFKMENDTFTLDFSGLVQAFNHVKETNPQ
                     KAFVDLAEMLAYGELRSWYEGRRLMADYVEEAKKAGKFEDYQKVLGQETVALLAKTSG
                     TQADDILQNVGFGHNKNVSLYGNDG"
BASE COUNT          335 a          237 c          243 g          261 t
ORIGIN      
        1 caggacggca tttcccaagc taatgaattg cgtacccttg aagaattggg tatccaatct
       61 ttggatctcg cctataaaga tgtaaataaa aatctcggta acggtaacac tttggctcag
      121 caaggcagct ataccaaaac agacggtaca accgcaaaaa tgggggattt acttttagca
      181 gccgacaatc tgcacagccg cttcaaagac aaagtggaac tcactgccga acaggcaaaa
      241 gccgccaatc ttgcgggcat cggccgtctg cgcgatttgc gcgaagctgc cgcattgtcc
      301 ggcgatttgg ccaatatgct gaaagcttat tctgccgccg aaactaaaga agcacagttg
      361 gcattgttag ataatttgat tcacaaatgg gcggaaaccg attcgaactg gggcaaaaaa
      421 tcgccaatgc gactttcaac cgattggacg caaacggcta atgaaggtat tgcactgaca
      481 ccatcccaag tagcacaact aaaaaagaac gctttagttt ccctttctga taaagctaaa
      541 gcagctattg acgccgcccg cgaccgcatt gccgtgcttg atgcctacac ggggcaggat
      601 tccagcacgc tctattacat gagcgaggaa gatgcgctta atatcgtcaa agtaaccaac
      661 gatacatacg accatctcgc caaaaacatc taccaaaacc tgttgttcca aacccgtttg
      721 cagccatatt tgaatcaaat cagtttcaaa atggaaaatg atacgttcac tttggatttt
      781 agtggtcttg ttcaagcatt taaccatgtc aaagaaacta atccgcaaaa agcttttgtg
      841 gatttggccg agatgcttgc atatggcgaa cttcgttctt ggtatgaagg ccgaagacta
      901 atggccgatt atgtggagga ggcaaaaaaa gcaggtaaat ttgaagatta ccagaaagtg
      961 ttgggtcagg agaccgttgc attattagct aaaacatcgg gtacgcaagc agatgatatc
     1021 ctgcaaaatg taggctttgg tcataataaa aatgtttctt tatatggtaa tgacgg
//
LOCUS       DAXHPV010000249         1037 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.249, whole genome shotgun sequence.
ACCESSION   DAXHPV010000249 DAXHPV010000000
VERSION     DAXHPV010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1037)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1037)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.249"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(299..685)
                     /locus_tag="ACFM6C_002037"
     CDS             complement(299..685)
                     /locus_tag="ACFM6C_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HFC6159422.1"
                     /translation="MRKILLDTHALLWWLLDDKKLGISARKLIENPRNAIFVSAASIW
                     EISIKQNKGLLKLPEEFFDVLQEEDFEMLPIGLFHAKQAGSLPEIHKDPFDRMLIAQT
                     QAEGFELMTVDEYIPQYGIRVVNASS"
     gene            complement(682..930)
                     /locus_tag="ACFM6C_002038"
     CDS             complement(682..930)
                     /locus_tag="ACFM6C_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HFC6159423.1"
                     /translation="MFQANIHQAKTNLSQLIQRAEAGEIVIIAKAGKPCVQLIGIEKP
                     ARNAGRLKKFSHMENTDISRILEDDNETAALFFEESAL"
BASE COUNT          283 a          247 c          182 g          325 t
ORIGIN      
        1 cagccatata tattaagtac ctgctcttta tgcgcttttt taggaaagga agatcaaacg
       61 gttcaatagc gaagtcttgc ccaaatttga tggacaggat atagaataca tgcgtgcata
      121 ccacaccctg ccaaagttgg gagatgcact taaggttgca cttgtggtcg ccaactatgc
      181 ctatacacgc ggatttcccg cgtttatagg ccgcgacgga agtctggctt ttaagcgaag
      241 acaataaccg aaaagaccgc ctcggcggtc tttcttgtgt acacagtttt tgtatttgtc
      301 agcttgatgc gttgacaact ctaattccat actgcggaat atattcatcg acagtcatca
      361 gttcaaagcc ttccgcttgg gtttgtgcaa tcaacatcct atcgaaaggg tctttgtgta
      421 tctccggaag gcttccagcc tgttttgcat gaaacagacc tataggcaac atttcaaaat
      481 cctcttcttg aagcacatca aaaaactctt ccggtaattt caacaacccc ttgttctgct
      541 tgatggaaat ttcccaaata cttgctgcac tgacaaagat cgcatttctc ggattttcta
      601 tcagtttgcg tgcagatatc cccagtttct tgtcatccaa caaccaccac agcaacgcat
      661 gggtatcaag cagaatcttt ctcacagagc cgactcctca aaaaataaag ctgccgtttc
      721 attgtcatcc tcaagaatac gtgaaatatc cgtattttcc atatgactga attttttcaa
      781 ccttcctgca tttcgtgccg gtttttcaat accgattagt tggacgcaag gcttacctgc
      841 cttcgcaata ataacaattt cccctgcttc tgctctttga atcaattgac tcaaattggt
      901 ttttgcctga tgaatatttg cttgaaacat aacacttctc atgattagct aacttaacta
      961 atatacatca ttaccaagat tttgggaatc tcattacata tatttgatta tatccgccgt
     1021 tttattcaca ccttgct
//
LOCUS       DAXHPV010000250         1034 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.250, whole genome shotgun sequence.
ACCESSION   DAXHPV010000250 DAXHPV010000000
VERSION     DAXHPV010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1034)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1034)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1034
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.250"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..227
                     /locus_tag="ACFM6C_002039"
     CDS             <1..227
                     /locus_tag="ACFM6C_002039"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159424.1"
                     /translation="YRFLLIRYTTMNPSQYLFIDLNFDKIPDTRLCCFSIFQPTVNLK
                     QPVHAMLQFLFLSADCFDKELKIHFMHLKI"
     gene            335..895
                     /locus_tag="ACFM6C_002040"
     CDS             335..895
                     /locus_tag="ACFM6C_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA large subunit pseudouridine synthase E"
                     /protein_id="HFC6159425.1"
                     /translation="MKNLIAFNKPYGVICQFSPHEKHKSLKDFINLPGFYPAGRLDTD
                     SEGLLLLTDDGRLQAQITDPKFKHPKTYWAQLEGVPDESRLESLRKGIDLGGFVTRPA
                     SIRILKHGEADSLWERIPPIRVRKTVPDFWIEITISEGKNRQVRRMTAKAGYPCLRLI
                     RVASGRLKLFDLDLKPGEWAYAPFKP"
BASE COUNT          297 a          286 c          207 g          244 t
ORIGIN      
        1 cgtaccggtt tttgttaatc cgctatacca cgatgaatcc ttcgcaatat ctgtttatcg
       61 acctcaattt tgacaaaata ccggatacgc gcctttgttg cttttccatc ttccaaccaa
      121 ctgtaaatct caaacagccg gtacacgcca tgcttcagtt tcttttcctg tcggcggatt
      181 gtttcgacaa agaattgaaa atccatttca tgcaccttaa aatttaatct gcattcaaac
      241 cttttcactt tggaagcacc atttatcgga tgtcccttcg caataaacaa attttcccga
      301 taccgccgcc catttcaacc caaacccaaa acctatgaaa aacctcatcg ccttcaacaa
      361 accctatggc gttatctgcc aattttcacc gcacgaaaaa cacaaaagcc tcaaagactt
      421 tatcaatctt cccggcttct accccgccgg acggctcgac accgacagcg aggggctgct
      481 gctgctgacc gacgacggca ggcttcaggc acaaattacc gaccccaaat tcaaacaccc
      541 taaaacctac tgggcgcaac tggagggcgt acccgacgaa agccgattgg aaagcctaag
      601 aaaagggata gacttaggcg gtttcgttac ccgtccggca agcatccgca tcttgaaaca
      661 cggagaagca gattcgttat gggagcgcat cccgccgata cgcgtccgca aaaccgttcc
      721 cgatttttgg attgaaatta ccatttctga gggcaaaaac cgccaagtca ggcgaatgac
      781 cgccaaggcg ggctatccct gcctgcgtct gatcagagtg gcaagcggca gactgaaact
      841 gtttgatttg gatttaaaac ccggggaatg ggcatacgcc ccgtttaaac cataatcacg
      901 tttatctcat catttccaca aaagtgggaa tccggaattt tatagtggat taacaaaaat
      961 caggacaagg cgacgaagcc gcagacagta caaatagtac gaaaccgatt cactcggtgc
     1021 ttcagcacct taga
//
LOCUS       DAXHPV010000251         1030 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.251, whole genome shotgun sequence.
ACCESSION   DAXHPV010000251 DAXHPV010000000
VERSION     DAXHPV010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.251"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            237..908
                     /locus_tag="ACFM6C_002041"
     CDS             237..908
                     /locus_tag="ACFM6C_002041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HFC6159426.1"
                     /translation="MFPDKYKLSLEENIFLAKKVLVAQIHNLSRFENCQTTLLQTEQI
                     IHGKNVASASLEDIQTILNLKRAYQYVISHISNGEPVNISLLKKINNIVAKDDSLAPG
                     DFRTGSVGVTLLDGSRHAPNPVKEIEVARVLQNIGLQSGSTTEAAVRFMLYCMRQQVF
                     WDGNKRTATLFANGLMMAGGCGILEISEMQMPQFNEKLSAFYRSGDDTDISKFVYQNC
                     ISGID"
BASE COUNT          298 a          241 c          221 g          270 t
ORIGIN      
        1 ttttgcaaag gtctcaaacg gatgaaatca accgatattc aaacacagtc atttttagcg
       61 cattttcagc gtatcgttaa tgcggaaaat ttcgtgaaca ggttttttgc acaggtctcc
      121 gcctcgtttc gcgggatggg aaaccgtatt agaaaacgga cgcacgcaac ataaaccccg
      181 aaagtgatga taagatgatg atttaacgta ctgctttaat tatttaagga attatcgtgt
      241 ttcccgacaa atacaagttg agtttggaag aaaatatttt tctggcaaag aaagtattgg
      301 ttgcccaaat tcacaacctc agccgttttg agaattgtca gacgaccttg ttgcagaccg
      361 aacaaattat ccatggcaaa aatgtagcct ccgcgtcact ggaagacatc caaaccatct
      421 tgaacctgaa acgtgcctat caatatgtga tttcgcatat ttcaaatggc gaaccggtca
      481 atatttcact ccttaaaaaa atcaacaaca ttgttgccaa ggacgattct ttggcacccg
      541 gtgatttccg taccggttcg gtcggcgtaa cgctattgga cggttcccgt catgccccga
      601 atccagtgaa ggaaattgaa gtggcccgcg tgttacaaaa tatcggactg caaagcggtt
      661 cgacgacgga ggcagccgtc cgttttatgc tttattgtat gcggcagcag gttttttggg
      721 acggcaacaa acgaacggca accttatttg ccaacggtct gatgatggcg gggggctgcg
      781 gcatcttgga aatctccgaa atgcagatgc cgcaattcaa tgaaaaactg tccgcattct
      841 atcgctccgg cgacgatacc gatatttcca agtttgtgta tcaaaattgt atatcgggca
      901 tagactgaga cctttgcaaa atcccccaaa atcccctaaa ttcccaccaa gacatttagg
      961 agatttctca tgagcacctt cttccaacaa accgcgcaag ccatgattgc taaacacatc
     1021 gaccgcttcc
//
LOCUS       DAXHPV010000252         1023 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.252, whole genome shotgun sequence.
ACCESSION   DAXHPV010000252 DAXHPV010000000
VERSION     DAXHPV010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1023)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1023)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.252"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(48..986)
                     /locus_tag="ACFM6C_002042"
     CDS             complement(48..986)
                     /locus_tag="ACFM6C_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159427.1"
                     /translation="MDAYPEAEAPPQSIVELVPVLIAVTDGGLRVLTVAQGTLLPNGP
                     LSPLRNSLQAGVKLWVAKQTSQPMGYVEQLYTFVDTHRRNEHGMPVLYVSYLGLVREA
                     ADSILHPDAKWQDCYGYFPWEDLRTDGGQRDAVVSRLRIWANSADTEEVRQMRLKRIH
                     LCWGVEPENWSEEYVLQRYEMLYESGLIVEAAEPQANFDFALTGQPMRHDHRRVLATA
                     LSRLRAKIKYRPVIFELMPPEFTLLQLQNSVEAISGRLLHKQNFRRQIQQQNLIEPSD
                     TGVSGSKGRPAQLCRFRDDVLPDRLISDIGLPLGSR"
BASE COUNT          189 a          287 c          321 g          226 t
ORIGIN      
        1 ccttgtcctg atttttgtta atccactata ggtcgtctga aaacgggcta acggctgccc
       61 agcggcaatc cgatgtccga aatcagcctg tcgggcagga cgtcgtcgcg gaagcggcaa
      121 agctgcgcgg gacggccttt gctgcccgat acgccggtat ccgacggctc gataaggttt
      181 tgctgctgaa tctggcggcg gaagttttgc ttgtgcagca atcttccgct gatggcttcg
      241 acactgtttt gcagttgcag cagcgtgaat tcgggcggca tcagttcaaa aatcacgggg
      301 cggtatttga ttttggcgcg caggcgggac agggcggtcg ccagtacgcg acggtgatcg
      361 tggcgcatgg gctgccccgt gagcgcgaag tcgaagtttg cctgcggctc ggcggcttcc
      421 actatcagac cgctttcata cagcatttca tagcgttgta aaacgtattc ttccgaccag
      481 ttttccggtt cgacccccca gcacaaatga atgcgcttga gccgcatttg acgcacttcc
      541 tccgtgtccg ccgaatttgc ccaaatgcgc aggcggctga cgacggcgtc gcgctgcccg
      601 ccgtcggtgc gcaagtcttc ccacgggaaa tagccgtagc agtcctgcca tttcgcatcc
      661 gggtgcagga tgctgtcggc tgcctcgcgc accagcccca aatagctgac gtacaagacg
      721 ggcatgccgt gttcgttgcg gcggtgggta tcgacaaagg tgtaaagctg ttccacatag
      781 cccataggct gcgaagtctg cttggcaacc cacagcttca cgcccgcctg cagggaattg
      841 cgcagagggg agagcgggcc gttgggcagg agtgtgcctt gggcgacggt taatacccgc
      901 aggccgccgt cggtaacggc aatcaatacg ggaaccagct cgacgatgct ttgcggcggg
      961 gcttcggctt cggggtaggc atccatgctc ggctttctgc gggtgggaaa ggctttattg
     1021 tat
//
LOCUS       DAXHPV010000253          995 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.253, whole genome shotgun sequence.
ACCESSION   DAXHPV010000253 DAXHPV010000000
VERSION     DAXHPV010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 995)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 995)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..995
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.253"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..>995
                     /locus_tag="ACFM6C_002043"
     CDS             <1..>995
                     /locus_tag="ACFM6C_002043"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6159428.1"
                     /translation="RQSGLDIYAWHGMYFFPRFPFIDIDRIRWVRVGLKAFKHYIREN
                     GLPDLIHAHRMNYAGILAQKISQKYGIPYVVTKHSSTITRGLIRPHQWQPMKNAAAHA
                     AARLAISRHFAHVLQHKYGCEWQYLPNILGGIFNRPFEQREKNNKPHFVFCTVSHLRR
                     LKGHDVLLTAFARALAQCPQLRLNIGGSGQEEQRLKQQAADLGITHAVTFLGALQPEA
                     VLDLMRNSDAFVLASRTETFGVVYIEALSQGLPVIATRCGGAESIVSDGNGYLVPVDD
                     DDALADALIKMYEHHSDFEPARLRENCLNEFGENAVIGRLIGIFRQAIAEYGKKIP"
BASE COUNT          250 a          301 c          239 g          205 t
ORIGIN      
        1 cggcaaagcg gtttggacat ctatgcatgg cacggcatgt atttcttccc ccgctttccg
       61 ttcatcgaca tcgaccgcat ccgctgggtg cgcgtgggtt tgaaagcctt caaacactac
      121 atccgcgaaa acgggctgcc cgacctgatt cacgcccacc gcatgaacta tgccggcata
      181 ctcgcccaaa aaatttccca aaaatacggc atcccctatg tcgtcacgaa acacagcagc
      241 accatcacgc gcggtctgat ccgtccccac caatggcagc ctatgaaaaa tgcggcggcg
      301 cacgccgccg cacgtctcgc catcagccgc catttcgcac acgtcctgca acacaaatac
      361 ggctgcgaat ggcagtacct ccccaacata ctgggcggaa tattcaaccg accgtttgaa
      421 caaagagaaa aaaacaacaa accgcatttc gtgttctgca ccgtctcgca ccttcgccgt
      481 ctcaaaggac acgatgtcct gctcactgcc tttgcccggg cgttggcaca atgcccgcaa
      541 ctgcgtctaa acatcggcgg cagcggacag gaagaacagc ggctgaaaca gcaggcggca
      601 gacttgggca ttacccatgc cgttacattt ttgggcgcat tgcagcccga agcagtcttg
      661 gatttgatga ggaacagcga cgcattcgtc cttgccagcc gcaccgaaac cttcggcgtg
      721 gtctatatcg aagcactgtc ccaaggattg cccgtcattg caacacgctg cggcggtgcg
      781 gaatctattg tttcagacgg caacggatat ttggttcctg ttgacgacga cgatgccctt
      841 gccgacgcac tcatcaaaat gtatgaacac cactctgatt ttgaacctgc ccgacttagg
      901 gaaaactgtc tgaacgaatt tggcgaaaat gccgttatag gcaggttgat cggcattttc
      961 cgacaggcaa tcgcagaata cggtaagaaa atacc
//
LOCUS       DAXHPV010000254          960 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.254, whole genome shotgun sequence.
ACCESSION   DAXHPV010000254 DAXHPV010000000
VERSION     DAXHPV010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 960)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 960)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..960
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.254"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..>960
                     /locus_tag="ACFM6C_002044"
     CDS             <1..>960
                     /locus_tag="ACFM6C_002044"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003680490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HFC6159429.1"
                     /translation="VCVLEKQHFPRFVIGESLLPHCMEMLEEAGFADAVRAEPGFQLK
                     NGAAFSWGSRYTEFDFTDKFSDGPGTTYQVRRAVFDKILIEEAAKQGVEVRFGHGVTA
                     FDNSGDFVRLNIETDTGKRYELTAKFVLDASGYGRVLPRLLNLETPSHLPPRQAHFTH
                     IDDNITNPKFDRNKILITTYPQHRDVWIWLIPFGDNRCSVGVVGTPDKLAGESETVLK
                     KFVYECPMLNEILDKAVWENDFPFRSIQGYSANVKSLHGRHFALLGNAAEFLDPVFSS
                     GVTIALHSAKLAADLLAKQLKGEAADWQTEFAEPLMIGVDAFR"
BASE COUNT          224 a          288 c          250 g          198 t
ORIGIN      
        1 aagtctgcgt gttggaaaaa cagcactttc cgcgcttcgt catcggcgaa agcctgctgc
       61 cgcactgtat ggaaatgctg gaagaagccg gatttgccga tgccgtgcgc gccgagcccg
      121 gctttcagtt gaaaaacggc gcggcgtttt cgtggggcag ccgttatacc gaattcgatt
      181 tcaccgataa attttcagac ggccccggca cgacttatca agtgcgccgc gccgtgttcg
      241 ataaaatcct gattgaagaa gccgccaaac aaggcgttga agtacgtttc gggcacggcg
      301 taaccgcgtt cgacaacagc ggcgattttg tccgcctgaa catcgaaacc gacaccggca
      361 agcgctatga actgaccgcg aaattcgtct tggacgcaag cggttacgga cgcgtgctgc
      421 cgcgcctgct aaacttggaa acgccctcgc acctgccgcc gcgccaagcg catttcacgc
      481 acatcgacga caacatcacc aacccgaaat tcgaccgcaa caaaatcctg attaccacct
      541 atccgcaaca ccgcgacgtg tggatttggc tgattccctt cggcgacaac cgctgttccg
      601 tcggcgtggt cggcacgccc gacaaacttg ccggcgaatc ggaaacagtg ttgaaaaaat
      661 ttgtttacga atgcccgatg ctgaacgaaa ttttggacaa agccgtttgg gaaaacgatt
      721 ttccgttccg ctccatccaa ggctattccg ccaatgtgaa atcgctgcac ggcaggcatt
      781 tcgcgctatt gggcaatgcc gccgagttcc tcgatcccgt gttctcgtcg ggcgtaacca
      841 tcgcgctgca ctccgccaaa cttgccgccg atctgttggc aaaacaactc aaaggcgaag
      901 ccgccgattg gcaaaccgaa tttgccgaac ccttgatgat cggcgtggac gcgttccgca
//
LOCUS       DAXHPV010000255          959 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.255, whole genome shotgun sequence.
ACCESSION   DAXHPV010000255 DAXHPV010000000
VERSION     DAXHPV010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 959)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 959)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..959
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.255"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(137..769)
                     /gene="mtrR"
                     /locus_tag="ACFM6C_002045"
     CDS             complement(137..769)
                     /gene="mtrR"
                     /locus_tag="ACFM6C_002045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     repressor MtrR"
                     /protein_id="HFC6159430.1"
                     /translation="MRKTKTEALKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTR
                     GALYWHFKNKEDLFDALFQRICDDIENCIAQDAEDAEGGSWAVFRHTLLHFFERLQSN
                     DIYYKFHNILFLKCEHTEQNAAVIAIARKHQAIWREKITAVLTEAVENQDLADDLDKE
                     TAVIFIKSTLDGLIWRWFSSCERFDLGKTAPRIIGIMMDNLENHPDLRRK"
BASE COUNT          220 a          209 c          249 g          281 t
ORIGIN      
        1 agattgagca taaaatttta gtaacctatg ttattgcaaa ggtctcaata tgtattttta
       61 gaagaaggct ttgtgtcatt ttgatgccgt ctgaaagggt ttgttcgttt cagacggcat
      121 tgctaccaag gcttgattat ttccggcgca ggtcgggatg gttttccaag ttgtccatca
      181 ttatcccgat gatgcgcggg gcggttttgc ccaaatcgaa acgttcgcag gaagagaacc
      241 accgccaaat cagcccgtcc aaggttgatt tgatgaagat aactgccgtt tccttgtcca
      301 aatcgtcagc caaatcctga ttttccaccg cttcggtcaa aacggcggta attttctcgc
      361 gccagattgc ctgatgcttg cgggcaatgg cgataacggc ggcgttttgc tccgtgtgtt
      421 cgcattttaa aaacaggatg ttgtggaatt tgtagtagat gtcgttgctt tgcagccgct
      481 cgaaaaagtg cagcagcgtg tggcggaata ccgcccaaga ccctccttcg gcatcttcgg
      541 catcttgcgc gatgcagttt tcgatgtcgt cgcagatacg ttggaacagc gcgtcgaaca
      601 agtcttcctt atttttgaaa tgccaataga gcgcgccgcg cgttacgccg gcggcttggg
      661 cgatttcgtt gagcgaggtg cgcgcaatcc ctttgcggta aaaggtttcc aaggcggcaa
      721 gcatcaggtg ttctttggtt tttaaggctt cggttttggt ttttctcata atggcggttt
      781 cgtttcgggt cggtttgatg agggcggatt ataaaaaaga ctttgtaacc atgcaatcgt
      841 gtatgtataa tgaaacccat gaaattgaga ctacatctca actttgaaaa cccatgaaac
      901 ctgcttcgca acccgtttga acatcgggtt ggcgaagcag gcggttttta tatcctgaa
//
LOCUS       DAXHPV010000256          953 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.256, whole genome shotgun sequence.
ACCESSION   DAXHPV010000256 DAXHPV010000000
VERSION     DAXHPV010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 953)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 953)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.256"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..>953)
                     /gene="mafB"
                     /locus_tag="ACFM6C_002046"
     CDS             complement(<1..>953)
                     /gene="mafB"
                     /locus_tag="ACFM6C_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 3"
                     /protein_id="HFC6159431.1"
                     /translation="MLFAAAISLLQIPISHANGLDARLRDDMQAKHYEPGGKYHLFGN
                     ARGSVKKRVYAVQTFDATAVSPVLPITHERTGFEGIIGYETHFSGHGHEVHSPFDHHD
                     SKSTSDFSGGVDGGFTVYQLHRTGSEIHPEDGYDGPQGSDYPPPGGARDIYSYYVKGT
                     STKTKINTVPQAPFSDRWLKENAGAASGFFSRADEAGKLIWENDPNQNWWGNRMDDIR
                     GIIQGAANPFLTGFQGLGVGAITDSAVNPVTYAAAQQTLQGIHDLGNVSPAAQLAAAT
                     ALQDSAFAVKDSINSAKQWADAHPNITATAQTALAVAEAAGT"
BASE COUNT          223 a          244 c          227 g          259 t
ORIGIN      
        1 gtacctgcag cctctgctac ggcaagggca gtttgggcag tagctgtaat gttcggatgg
       61 gcatcagccc attgcttggc ggaattgata ctgtccttaa ccgcaaaagc actgtcttgt
      121 aatgcggttg cagccgcaag ttgtgctgcg ggacttacat ttcctaaatc gtgaataccc
      181 tgtaaagttt gctgtgctgc cgcataggtt accgggttta ccgcgctgtc tgtaatcgcc
      241 ccaactccca atccctgaaa acccgttaga aaaggattgg ctgcaccttg gatgatgccg
      301 cgaatatcat ccatacggtt accccaccaa ttttgattgg ggtcgttttc ccatatcagt
      361 tttcctgctt catccgcacg gctgaaaaaa ccagaggcgg caccggcatt ttcttttagc
      421 cagcggtctg aaaaaggggc ttgcggaaca gtgtttatct ttgtttttgt agaagttcct
      481 ttgacataat agctgtatat atcccttgct cctccggggg gcggataatc gctgccttgc
      541 ggcccgtcat atccatcctc cggatggatt tccgaccctg tccgatgaag ttggtaaaca
      601 gtaaaaccac cgtctacacc gccgctgaaa tcagaagtgc tttttgaatc atgatgatcg
      661 aacggactgt gtacttcatg tccgtgccct gaaaaatggg tttcataacc gataatgcct
      721 tcaaaccctg tccgttcgtg tgtaataggc agtacaggac tgaccgcagt tgcatcaaat
      781 gtctggacgg cgtaaacccg ctttttaaca ctgccgcgag cattaccaaa cagatggtat
      841 ttaccacccg gttcgtagtg ttttgcctgc atatcatcgc gcaaacgggc atccaaaccg
      901 ttcgcatgac taatggggat ttgcagcaac gatattgctg ctgcaaacag cat
//
LOCUS       DAXHPV010000257          924 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.257, whole genome shotgun sequence.
ACCESSION   DAXHPV010000257 DAXHPV010000000
VERSION     DAXHPV010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 924)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 924)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.257"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(73..852)
                     /locus_tag="ACFM6C_002047"
     CDS             complement(73..852)
                     /locus_tag="ACFM6C_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FadR/GntR family transcriptional regulator"
                     /protein_id="HFC6159432.1"
                     /translation="MKLVRPQKISDQVLSVLEGRIVEGVYAEGGKIPPERVLAEEFGV
                     SRPSVRSALNVLVARQVLEARQGDGYYVSVKPQQDFLQSWQELLGKHSNWEQDVFDFS
                     CHIEGCMAALAAERRTDADLKRIGFWLEKFEEACESGNLEHQSEADVSFHQTIADAAH
                     NLLFSHLSGGLLKMLYRQTRSSLIYLNQEEDPRPKLMAQHRVLYEAISNRRPGEASEA
                     AKAHLNYVASSIMKDREYQSRNRHADTLAQNDLKRVQDWAV"
BASE COUNT          225 a          295 c          185 g          219 t
ORIGIN      
        1 caacgccgta ctggtttaaa tttagttcac tataccgata catccgaata tgccagaccg
       61 tctaaacggt attcataccg cccaatcctg cacgcgcttc aaatcgtttt gcgccaaagt
      121 atccgcgtgg cggttacggc tctgatattc cctgtctttc atgatgctgc ttgccacata
      181 attcaaatgt gcctttgccg cctccgaagc ctcgcccggc cgacggttcg atatcgcctc
      241 atacagcacg cggtgctgcg ccatcagttt cggacgcgga tcttcttcct gattcagata
      301 aataaggctg ctgcgcgtct gccggtacag cattttcaac aaaccgcccg acaaatggct
      361 gaacaacaaa ttgtgcgccg catccgcaat cgtctgatgg aagctgacat cggcttcgct
      421 ctgatgttcc agattgccgc tttcgcacgc ctcctcaaac ttttcaagcc aaaacccaat
      481 ccgcttcaaa tcggcatccg tccggcgttc tgccgccaat gccgccatac agccctcgat
      541 gtggcagctg aaatcaaaaa catcctgttc ccaattggaa tgcttgccca aaagctcctg
      601 ccaactttgc aaaaaatcct gctgcggctt gaccgaaaca taataaccgt ctccctgcct
      661 cgcttccaaa acctgacggg cgaccaaaac attcaatgcc gacctgaccg acgggcgcga
      721 aacgccgaac tcttccgcca aaacgcgttc gggcggaatc ttgccccctt ccgcgtaaac
      781 cccttccacg atgcggcctt ccaataccga caatacctga tcgctgattt tctgaggcct
      841 taccagtttc atcactcctc ctttataaag attccctgca gaacccttcc gaaatatagt
      901 ggattaacaa aaatcaggac aagg
//
LOCUS       DAXHPV010000258          921 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.258, whole genome shotgun sequence.
ACCESSION   DAXHPV010000258 DAXHPV010000000
VERSION     DAXHPV010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.258"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            118..408
                     /locus_tag="ACFM6C_002048"
                     /pseudo
     CDS             118..408
                     /locus_tag="ACFM6C_002048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243919.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
     gene            622..921
                     /locus_tag="ACFM6C_002049"
                     /pseudo
     CDS             622..921
                     /locus_tag="ACFM6C_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581605.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
BASE COUNT          254 a          263 c          221 g          183 t
ORIGIN      
        1 ttcgtcattc ccgcgcaggc gggaatctag gtctgtcggt gcggaaactt atcgggtaaa
       61 aaggtttctt gagattttac gttctggatt cccactttcg tgggaatgac gggatttaat
      121 gatgccgccg gcgtggcatc ctcctccgac atcaaaggca aatatgttca aagcgttaca
      181 gtcgcaaaag gcgtcattac cgccgaaatg aaatcaagcg tcgtaaacaa agaaatccaa
      241 ggcaaaaaac tctccctgtg ggccaagcgt caaaacggtt cggtaaaatg gttctgcgga
      301 cagccggtta cgcgcgccga caacgccaaa gacgacgccg ttaccggcac cgacaaaatc
      361 gacaccaagc acctgccgtc aacctgccgc gacgcagcat ctgccagccg tacaaaaaca
      421 cccggtttcg ctttcaaata cttccaaaaa atcagccgtt accgagtatt gcccgaatca
      481 cggcaaatga ccaaaaaact tcgtcattcc cgcgcaggcg ggaatctagg tttgtcggcg
      541 cagaaactta tcgggtaaaa aggtttctcc agtcctgaat cctagattcc cactttcgtg
      601 ggaatgacgg gatttaatga tgccgccagc gtggcatcct ccaccgacat caaaggcaaa
      661 tatgttgcag gggttaaagt tgaaaaaggc gtcgttaccg ccacaatgct ttcaaccggc
      721 gtaaacaaag aaatcaaagg caaaaaactc tccctgtggg ccaagcgtca agacggttcg
      781 gtaaaatggt tctgcggaca gccggttaag cgcgacgccg tcgccaccgc cgacgacgcc
      841 atcaccgccg ccagcgacac caagcacctg ccgtcaacct gccgcgacgc ttcatctgcc
      901 gtttgcatag aaacaccacc t
//
LOCUS       DAXHPV010000259          905 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.259, whole genome shotgun sequence.
ACCESSION   DAXHPV010000259 DAXHPV010000000
VERSION     DAXHPV010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 905)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 905)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..905
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.259"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..215
                     /locus_tag="ACFM6C_002050"
     CDS             <1..215
                     /locus_tag="ACFM6C_002050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159433.1"
                     /translation="DAGDVYCVYNIRLKQYTACQVTRVEEHGGKKTHATLLALDWQGN
                     KPLGAEELADLKPLYKDLKNNIGNIV"
     gene            546..>905
                     /locus_tag="ACFM6C_002051"
     CDS             546..>905
                     /locus_tag="ACFM6C_002051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility protein"
                     /protein_id="HFC6159434.1"
                     /translation="MYWERGLHMYKASAVVPTGYVRVGNTAPLVGEDTQRYASFWGDG
                     YDVYRQLRWQQISEKQRKAFKKAAKSKKTVMFAGREYGISKQNLSDVWDDFEDAMELK
                     AFPCLSSLFLTKWHKNLY"
BASE COUNT          281 a          146 c          212 g          266 t
ORIGIN      
        1 ctgatgccgg agacgtatat tgcgtctata acatcagact gaagcagtac actgcctgcc
       61 aggttacccg agttgaagaa cacggtggca aaaaaacaca tgcgaccctg ctggctttgg
      121 actggcaggg caacaaaccg cttggggcgg aggagctggc ggatttgaaa ccgctttaca
      181 aagacttaaa gaataatatt ggaaatattg tatgaacaaa aaattaaact atatttttat
      241 gttggactgt ttagggttgg tgatattgtt tacttgtata atagctactt ttgaaagaga
      301 ttatggattt aaaattttta ctaattctaa gaggcctgaa ttttattatt ggattggaat
      361 gttttattat ggaattattt cttgctggtt tgattatcaa ttaatttcaa caaaggcgaa
      421 ttcgtataaa agaaaagtta aacaatataa aattttttca gtaatatttt cagttttgat
      481 atttatttct actatagtaa aactttaaat tttggagcaa aaatttatga gcgattcaat
      541 tgaatatgta ttgggaacgc ggtctgcaca tgtataaggc aagtgccgtc gtgccgacgg
      601 gatatgtacg ggttgggaat accgcgccgc tggtcggcga agacacgcaa cggtatgcct
      661 ctttttgggg cgacggctac gacgtgtacc gtcagttgag atggcagcag atatccgaaa
      721 aacagagaaa ggcattcaaa aaagccgcta aaagcaaaaa gaccgtgatg tttgccggac
      781 gggaatacgg catatccaaa cagaatttga gcgatgtttg ggatgatttt gaagacgcga
      841 tggaactgaa ggcgtttccc tgcctgtctt cgctgtttct gaccaaatgg cataaaaatc
      901 tatat
//
LOCUS       DAXHPV010000260          892 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.260, whole genome shotgun sequence.
ACCESSION   DAXHPV010000260 DAXHPV010000000
VERSION     DAXHPV010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.260"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..858
                     /gene="mafA"
                     /locus_tag="ACFM6C_002052"
     CDS             <1..858
                     /gene="mafA"
                     /locus_tag="ACFM6C_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin MafA"
                     /protein_id="HFC6159435.1"
                     /translation="RFAVEQELVAASSRAAVKEMDLSALKGRKAALYVSVMGDQGSGN
                     ISGGRYSIDALIRGGYHNNPESATQYSYPAYDTTATTKSDALSSVTTSTSLLNAPAAA
                     LTKNSGRKGERSAGLSVNGTGDYRNETLLANPRDVSFLTNLIQTVFYLRGIEVVPPEY
                     ADTDVFVTVDVFGTVRSRTELHLYNAETLKAQTKLEYFAVDRDSRKLLITPKTAAYES
                     QYQEQYALWTGPYKVSKTVKASDRLMVDFSDITPYGDTTAQNRPDFKQNNGKNPDVGN
                     EVIRRRKGG"
BASE COUNT          237 a          336 c          184 g          135 t
ORIGIN      
        1 cgctttgccg tcgaacaaga actcgtcgcc gcatcgtccc gcgccgccgt caaagaaatg
       61 gacttgtccg ccctgaaagg acgcaaagcc gccctttacg tctccgttat gggcgaccaa
      121 ggttcgggca acataagcgg cggacgctac tctatcgacg cactgatacg tggcggctac
      181 cacaacaacc ccgaaagtgc cacccaatac agctaccccg cctacgacac taccgccacc
      241 accaaatccg acgcgctctc cagcgtaacc acttccacat cgcttttgaa cgcccccgcc
      301 gccgccctga cgaaaaacag cggacgcaaa ggcgaacgct ccgccggact gtccgtcaac
      361 ggcacgggcg actaccgcaa cgaaaccctg ctcgccaacc cccgcgacgt ttccttcctg
      421 accaacctca tccaaaccgt cttctacctg cgcggcatcg aagtcgtacc gcccgaatac
      481 gccgacaccg acgtattcgt aaccgtcgac gtattcggca ccgtccgcag ccgtaccgaa
      541 ctacacctct acaacgccga aacccttaaa gcccaaacca agctcgaata tttcgccgtc
      601 gaccgcgaca gccggaaact gctgattacc cctaaaaccg ccgcctacga atcccaatac
      661 caagaacaat acgccctttg gaccggccct tacaaagtca gcaaaaccgt caaagcctca
      721 gaccgcctga tggtcgattt ctccgacatt accccctacg gcgacacaac cgcccaaaac
      781 cgtcccgact tcaaacaaaa caacggtaaa aaccccgatg tcggcaacga agtcatccgc
      841 cgccgcaaag gaggataaac cgtgaaaccg ctgcgcagac tgacaaacct cc
//
LOCUS       DAXHPV010000261          891 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.261, whole genome shotgun sequence.
ACCESSION   DAXHPV010000261 DAXHPV010000000
VERSION     DAXHPV010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 891)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 891)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..891
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.261"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
BASE COUNT          218 a          218 c          218 g          237 t
ORIGIN      
        1 gcgaggcaac gccgtactgg tttttgttaa tccactatac cgtcgttccc acggtcagga
       61 tttcagattg cggacatctg tcagaaaaga caaaaaacct tccgccgtca ttccctacag
      121 gcgagaatcc gatccgttga aattcggttg ttttaaataa attcttacag ctttgatttt
      181 ctgtttttcc gataacgccg taactttgaa acgcgaaagc ggtaatccga tccgttggga
      241 ttttgcaact tcaaatcaat ccgcaaactg aaatcccgtc attcccgcgc agtcgtgaat
      301 ccgaacgcgt ccgcacgaaa acctgcatcc cgtcattccc acggaagtgg gaatctagga
      361 cgtaaaatct caagaaaccg ttttacccga taagtttccg caccgacaga cctggattcc
      421 cgcctgcgcg ggaatgacga aatttcagcg agccgtaggg tgggctgtag ggtgggcttc
      481 agcccaccaa tttcaccgca tcaaaggttt ttgggaatac ggcggtttcg gttttcggtg
      541 ggaatgggcg gaatggataa cattgacgga gttgggggaa taggtggaaa cggtgggatt
      601 ggtgggctga agcccaccct acagccagcc ctatgtccac gctgcacatt ctacgcccgc
      661 cttgcgtttc ttataagcag cattttacgc aatactttgc gtccgctgaa aaaatttcaa
      721 acggtctttt ttatcaaatg cgaaaaatat aacgtcattc ccgcgcaggc gggaatctag
      781 tctgtcggtg cggaaactta tcggataaaa cggtttcttt agattttacg ccctagattc
      841 ccgcctgcgc gggaatgacg ggatttgagg tttctgtttt tgattttccg c
//
LOCUS       DAXHPV010000262          847 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.262, whole genome shotgun sequence.
ACCESSION   DAXHPV010000262 DAXHPV010000000
VERSION     DAXHPV010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 847)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 847)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..847
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.262"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(287..691)
                     /locus_tag="ACFM6C_002053"
                     /pseudo
     CDS             complement(287..691)
                     /locus_tag="ACFM6C_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815999.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
BASE COUNT          191 a          180 c          222 g          254 t
ORIGIN      
        1 gcgtggtgtt tctatgcaat cggcagatgc tgcgtcgcgg caggttgacg gcaggtgcga
       61 cgacatataa gtttctgtgc ggacgagcct agattcccgc ttacacggga atgacgggat
      121 taaagtttca aaatttattc taaataactg aaactcaacg aactagattc ccgcttttgc
      181 gggaatgacg aattttaggt tgctgttttt ggtttcctgt ttttgtggga atgatgaaat
      241 tttaagtttt aggaatttat cggaaaaaac agaaaccgct ctcccgtcat tcccgcgcag
      301 gcgggaatct aggtctgtcg gtacggaaac ttatcaggta aaacggtttc tttagtttgg
      361 tgtcgatttt gtcggtgccg gtggcggcgg caacgtcgtc tttggcgttg gcgtcgcgct
      421 caaccggctg tccgcagaac cattttaccg aaccgtcttg acgcttggcc cacagggaga
      481 gttttttgcc ttggatttct ttgtttacgc cgcttgaaag cattgtggcg gtaatgacgc
      541 cttttgcgac tgtaacttcc ttaacatatt tgcctttgat tgttgaagaa gatgctacgc
      601 cggcggcact attgtcggac ggccattcgc cgtgattcag gtaatactcg gtaacggctg
      661 atttttgacc ttcggccaaa aggatagctt cgtcattccc gcgcaggcgg gaatccaggt
      721 ctgtcggtac ggaaacttat cgggtaaaac ggtttcttga gattttgcgt tctagattcc
      781 cgctttcgcg ggaatgacgg gattaaagtt tcaaaattta ttctaaataa ctgaaactca
      841 acgaact
//
LOCUS       DAXHPV010000263          831 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.263, whole genome shotgun sequence.
ACCESSION   DAXHPV010000263 DAXHPV010000000
VERSION     DAXHPV010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.263"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..440
                     /locus_tag="ACFM6C_002054"
     CDS             <1..440
                     /locus_tag="ACFM6C_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RTX iron-regulated FrpC family protein"
                     /protein_id="HFC6159436.1"
                     /translation="AHFIQFLRDGLDSVDDIVIRKDACSLSTTMGERLLTYGVKKMPS
                     AYPEYEAYEDKRHIPENPYFHKLYYIKKGENPAIITHRNNRINQTEEDNYSTSVGSCI
                     NGFTVRYYPFIREKQQLTQQELVGYHQQVEQLVQSFVNNPSKK"
     gene            457..>831
                     /locus_tag="ACFM6C_002055"
     CDS             457..>831
                     /locus_tag="ACFM6C_002055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HFC6159437.1"
                     /translation="MNEGEVVLTPEQIQTLYGYASRGDTYGGWRYLANLGDRYADNAA
                     AIVGKDANLNGLNLWMKKGVENLWDDTVGKKTRLEKFDRVALQHFSQYVDLINENNGR
                     LPNTSEIERSYYKAVTYHGVSSS"
BASE COUNT          278 a          131 c          182 g          240 t
ORIGIN      
        1 aagcacactt tatccaattt ctacgcgacg gtttggatag cgtggacgat attgttatcc
       61 gaaaagatgc gtgtagttta agcacgacta tgggagaaag attgcttact tacggggtta
      121 aaaaaatgcc atctgcctat cctgaatatg aagcttatga agataaaaga catattcctg
      181 aaaatccata ttttcataaa ctttactata ttaaaaaagg agaaaatccg gcgattatta
      241 ctcatcggaa taatcgaata aaccaaactg aagaagataa ttatagcact agcgtaggtt
      301 cctgtattaa cggtttcacg gtacggtatt acccgtttat tcgggaaaag cagcagctca
      361 cacagcagga gttggtaggt tatcaccaac aagtagagca attggtacag agttttgtaa
      421 acaatccaag taaaaaataa tttaaaggat cttattatga atgagggtga agttgtttta
      481 acaccagaac aaatccaaac cttgtatggt tatgcttctc gtggcgatac ctatggcggt
      541 tggcgttatt tggctaattt gggtgaccgt tatgcggata atgctgccgc aattgtcggt
      601 aaggatgcaa acttaaatgg tttgaattta tggatgaaaa aaggggtgga aaacctatgg
      661 gatgatacgg tcggtaaaaa gacccgttta gagaaatttg atcgggttgc attgcaacat
      721 ttcagccaat atgtagatct aattaatgaa aataatggta gattacctaa cactagtgaa
      781 attgagagaa gttactataa agccgttacc tatcatggcg tttcttctag t
//
LOCUS       DAXHPV010000264          715 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.264, whole genome shotgun sequence.
ACCESSION   DAXHPV010000264 DAXHPV010000000
VERSION     DAXHPV010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 715)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 715)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.264"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(1..467)
                     /locus_tag="ACFM6C_002056"
                     /pseudo
     CDS             complement(1..467)
                     /locus_tag="ACFM6C_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            450..>715
                     /locus_tag="ACFM6C_002057"
     CDS             450..>715
                     /locus_tag="ACFM6C_002057"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159438.1"
                     /translation="MKEGAHGKSPKCLGGNLGDFGEFCKGLNLQIGFKTIRPNSSASK
                     NGMPIYSNVSRREIFDLYEQYSGQRPDFRNIPNKGQLSSTTITSG"
BASE COUNT          184 a          133 c          201 g          197 t
ORIGIN      
        1 tgctgtttgc tgccggcggt ctgaataatg gtggcgtcaa cgacggcggc ggatgctttc
       61 tctactttta ggcctttttc ggtcagttgg cagttaatca gttccagcaa ttcggacagg
      121 gtgtcgtctt gcgccagcca attgcggtaa cggcataaag tactgtaatc ggggatgctc
      181 agttcgtcaa agcggcaaaa caggttgaag tcgatgcggg taatgaggct gtgttcgagt
      241 tcgggatcgg agagactgtg tcattgtccg agcaggacgg ctttgaacat ggacaacagc
      301 gggtaggcgg gacggccgcg gtgatctcta aggtaacggg ttctttgacg attcaggtat
      361 tgttcgatcg gctgccaatc aatcacctgg tccaacttca atagcgggaa acggtcgatg
      421 tgtttagcaa tcatggcttg ggcggtttgt tgaaagaagg tgctcatgga aaatctccta
      481 aatgtcttgg tgggaattta ggggattttg gggaattttg caaaggtctc aacttacaaa
      541 ttggttttaa aacgatcaga ccaaattcat ctgccagcaa aaatggaatg ccgatatatt
      601 ctaacgtaag tcgaagagaa atatttgatt tgtatgaaca atattcaggg cagaggcctg
      661 attttaggaa tattccgaat aaagggcaat tatcttctac gactattaca tcagg
//
LOCUS       DAXHPV010000265          693 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.265, whole genome shotgun sequence.
ACCESSION   DAXHPV010000265 DAXHPV010000000
VERSION     DAXHPV010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 693)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.265"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            44..>693
                     /locus_tag="ACFM6C_002058"
     CDS             44..>693
                     /locus_tag="ACFM6C_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-layer family protein"
                     /protein_id="HFC6159439.1"
                     /translation="MLKTPPTLAAELSGKTGVSISAPYANENSRILLSTTDISSENGK
                     IKIQSYGEQYYYARQSELYTFERRSYKTGKWYNRKHITEVKEHKNAKPDAVNLSASQG
                     IDIKSGGSIDAYATAFDAPKGSINIEAGRKLTLYAVEELNYDKLDSQKRRRFLGISYS
                     KAHDTTTQVMKTALPSRVVAESANLQSGWDTKLQGTQFETTLGGATIRAGVGEQARA"
BASE COUNT          223 a          203 c          154 g          113 t
ORIGIN      
        1 caagtaaata ttcagattcc ctatatactg cccagacgcg tgcgtgctga agacacctcc
       61 tacgcttgct gcagaacttt cgggtaaaac cggtgtgagc attagcgcac cgtatgccaa
      121 tgagaacagt cgcatcctgc tcagcaccac ggatatcagt tcggaaaacg gcaaaatcaa
      181 aattcaatct tacggtgaac aatattacta tgcgagacag agcgaactct atacctttga
      241 acgccgcagc tacaaaaccg gcaaatggta caaccgcaaa cacattaccg aagtcaaaga
      301 acacaaaaac gccaagcccg acgcagtaaa cctcagcgca tcccaaggca tcgacatcaa
      361 atctggtggc agcatcgacg cctacgccac cgcattcgat gcccccaaag gcagcattaa
      421 catcgaagcc gggcggaaat tgacactcta tgccgtagaa gagctcaact acgacaaact
      481 agacagccaa aaaaggcgca gatttctcgg catcagctac agcaaagcac acgacaccac
      541 cacccaagtc atgaaaaccg cgctgccctc aagggtagtt gcagaatcag ccaacctcca
      601 atcgggctgg gataccaaac tgcaaggcac acagtttgaa accacactgg gtggcgcaac
      661 catacgcgca ggcgtaggtg agcaggcacg ggc
//
LOCUS       DAXHPV010000266          680 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.266, whole genome shotgun sequence.
ACCESSION   DAXHPV010000266 DAXHPV010000000
VERSION     DAXHPV010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 680)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.266"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(91..642)
                     /locus_tag="ACFM6C_002059"
     CDS             complement(91..642)
                     /locus_tag="ACFM6C_002059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159440.1"
                     /translation="MKVLNGWSDRKMWRVLSALPIGVVFFDLIYGFVLNVLQGLDLQR
                     AVPDSEGVLAVTPDIAFNSLQIVANGGMAAVVCFGLAVVFLLNRSVRRRQVLEIGVFR
                     MLGLVAVLAFSAPSVWEWANALPLLLKGADVVNTGNARYVLTALCMPFPAVSCVIGLV
                     GRFRLQTASGRAAKSGGAGKADG"
BASE COUNT          189 a          270 c          128 g           93 t
ORIGIN      
        1 caaagaaacc gccattagca ctacaccccc ccaagctgcg gctgccaaac acatcggctg
       61 cttctcgacg cacccgctga aaaatgcgtc ctatccgtcc gccttgcccg caccccctga
      121 ctttgccgcc ctgcccgatg ccgtctgaag cctgaaccgc cccaccagcc cgatgacgca
      181 cgacaccgcc ggaaagggca tacacaaagc cgtcagcaca taacgcgcat tccccgtatt
      241 gaccacgtcc gcgcccttca gcagcagcgg tagcgcgttc gcccactccc acaccgacgg
      301 cgcgctgaac gccaataccg ccaccagccc caacatccgg aacaccccga tttccaacac
      361 ctgccgccgc cgcaccgaac ggttgagcaa aaacacaacc gccaacccga aacagaccac
      421 cgccgccata ccgccgttgg cgacaatctg caaactgttg aatgcaatat cgggcgtaac
      481 cgccaacacg ccttccgaat ccggcacggc acgctgcaaa tccaaaccct gcaacacatt
      541 caacacaaaa ccgtagatca aatcaaaaaa caccacgcct atcggcaaag cactcaaaac
      601 ccgccacatc ttcctgtccg accaaccgtt caaaactttc attttacccg accacgcaag
      661 ccgccgaaca aaaaataagg
//
LOCUS       DAXHPV010000267          660 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.267, whole genome shotgun sequence.
ACCESSION   DAXHPV010000267 DAXHPV010000000
VERSION     DAXHPV010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.267"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
BASE COUNT          178 a          134 c          178 g          170 t
ORIGIN      
        1 aacaacagta atattcaaag gttagctgaa gctttagaga ttctggattc ccactttcgt
       61 gggaatgacg ggatttgaga ttgcgacatt tatcgggagc aacagaaacc gctctgccgt
      121 cattcccgtg caggcgggaa tctagacctt agaacaacag caatattcaa agattatctg
      181 aaagtccggg attctggatt cccacttccg tgggaatgac gggattagag tttcaaaatt
      241 tattctaaat agctgaaact caacgcactg gattcccgcc tgcgcgggaa tgacgaattt
      301 taggtttctg attttggttt tctgtttttg taggaatgat gaaattttga gttttaggaa
      361 tttaccggaa aaaacagaaa ccgctccgcc gtcattcccg cgcaggcggg aatctaggac
      421 gtaaaatctc aagaaaccgt tgtacccgat aagtttccgt gccgacaagt ccggattccc
      481 gcctgcgcgg gaatgacggt tcagttgcgt aggactggat tgtgaaaagg ggcggattcg
      541 gtgaaaacgg cggaaatgtg ggattgatgg aatcggtggg ctgaagccct ccctacagag
      601 ctttcagacg gtattgtttg cgttttcggg atgggggcaa atgaaacgcc gacaaaccga
//
LOCUS       DAXHPV010000268          658 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.268, whole genome shotgun sequence.
ACCESSION   DAXHPV010000268 DAXHPV010000000
VERSION     DAXHPV010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 658)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.268"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..347
                     /locus_tag="ACFM6C_002060"
     CDS             <1..347
                     /locus_tag="ACFM6C_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6159441.1"
                     /translation="RLSHKRIAGLAGIAPHPREGGETKFKSRCFGGRSAVRKALYMAT
                     VAATRFEPLIRDFYQRLLSEGKPYKVAVTACMRKLLTISNARMRDYFAENDTAENDTA
                     ENDTAENGIRTA"
BASE COUNT          151 a          155 c          191 g          161 t
ORIGIN      
        1 ggcggctgtc gcacaaacgg atagcgggtt tggccggcat tgccccgcac ccgagggagg
       61 gcggggaaac caaatttaaa agccgctgct ttggcggaag gtctgcggtg cgtaaggcac
      121 tgtatatggc taccgtggca gcgacacgtt ttgaaccgct tattcgggat ttctaccaac
      181 gcctgctgtc cgagggtaag ccgtataagg ttgccgttac ggcatgtatg cgcaaactgc
      241 tgacgatatc gaatgcccgg atgcgtgatt attttgccga aaacgatacc gccgaaaacg
      301 ataccgccga aaacgatacc gccgaaaacg gtatccggac ggcttgattt gagttttggt
      361 atttttgccc gacggggtga aaaatacagt tgctacggct cgatgaatcg tcagaaatac
      421 ccgaaccgtc attcccgcgc aggtgggaat ccagaccggt cggtgcggaa acttatcggg
      481 aaaaaaggtt tctccgtccc tgaatcctgg attcccactt tcgtgggaat gacagaatgt
      541 aggttcgtgg gaatgacgtg gtgcaggttt ccgtgcggat gaattcatca ttcccgcgca
      601 ggcgggaatc tagtctgttc ggtttcagtt attttcgata aatgcttgtt gcttttca
//
LOCUS       DAXHPV010000269          655 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.269, whole genome shotgun sequence.
ACCESSION   DAXHPV010000269 DAXHPV010000000
VERSION     DAXHPV010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 655)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 655)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..655
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.269"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(52..537)
                     /locus_tag="ACFM6C_002061"
     CDS             complement(52..537)
                     /locus_tag="ACFM6C_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009349087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HFC6159442.1"
                     /translation="MRFFGIGFLVLLFLEIMSIVWVADWLGGGWTLFLMAATFAAGVL
                     MLRHTGLSGLLLAGAAMRSGGRVSVYQMLWPIRYTVAAVCLMSPGFVSSVLAVLLLLP
                     FKGGAVLQAGGAENFFNMNQSGRKEGFSRDDDIIEGEYTVEEPYGGNRFRNAIEHKKD
                     E"
BASE COUNT          193 a          210 c          121 g          131 t
ORIGIN      
        1 ttcaaaccgg aaaaatgccg tctgaacctt cagacggcat tccattcaca tttattcgtc
       61 ttttttgtgt tcgatggcgt ttcggaaacg attgccgccg taaggctctt caaccgtata
      121 ttccccctcg ataatatcgt catcgcggga aaagccctct tttctgcccg attggttcat
      181 gttgaaaaaa ttttccgcac ctcctgcctg caacactgca cctcccttaa acggcagcag
      241 cagcaatacc gccaacaccg aggatacgaa tcccggactc atcagacaca ccgccgccac
      301 cgtataacgg ataggccaca acatctgata aacggatacc ctcccgccgc ttctcattgc
      361 cgcgcccgcc aataaaagac cggacagccc cgtatgcctg agcatcagca cgccggcggc
      421 aaaggttgcc gccattagaa acagcgtcca accgccgccc aaccaatcgg caacccacac
      481 aatcgacata atctccaaaa acagcagcac caaaaaaccg ataccgaaaa atctcattga
      541 ccgtcatcct tatatttaag taaacagcaa accgcccgaa caggactcca agcgagctgc
      601 ctgtaaatga ttacaaaacc atgtgcttca agccgaaaca atgtgaaatc acgca
//
LOCUS       DAXHPV010000270          643 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.270, whole genome shotgun sequence.
ACCESSION   DAXHPV010000270 DAXHPV010000000
VERSION     DAXHPV010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.270"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..287)
                     /locus_tag="ACFM6C_002062"
     CDS             complement(<1..287)
                     /locus_tag="ACFM6C_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IgG-binding virulence factor TspB family
                     protein"
                     /protein_id="HFC6159443.1"
                     /translation="MYALSEKYNDNGFKAYKVLGEGGGIHTEYNYKFDKSLNLNVLES
                     STGARSLEKVPVKVTASVSRAAVLSGVGKLARLGAKLSTRAVPYVGTALLA"
     gene            complement(328..618)
                     /locus_tag="ACFM6C_002063"
     CDS             complement(328..618)
                     /locus_tag="ACFM6C_002063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159444.1"
                     /translation="MNKNERDFFYISNSDLDKLSESYPDRPLSYVFYCYLKETGLLKN
                     FSMDKCHNFFNRINFNESCFEIKFKDDSFFIIGNGKIDVSDSNNFFSVSFEC"
BASE COUNT          224 a          117 c           93 g          209 t
ORIGIN      
        1 tgggctaaaa gggctgttcc gacataagga actgcccttg tgcttaattt cgcgcctaag
       61 cgggcaagtt tgccgactcc tgacaagacg gcggcgcggg aaactgatgc agttacttta
      121 acggggactt tttcaagaga gcgtgcgcct gttgaacttt ctaatacatt caaattcaaa
      181 cttttatcaa atttgtaatt atattctgta tgaattcctc ctccctcacc taaaactttg
      241 tatgccttaa atccattatc gttatatttt tccgaaagtg catacatcaa tttcccattt
      301 ttaatttcta aatctgctga aaaagattta gcactcaaaa gaaacagaaa agaaattatt
      361 agaatccgaa acatcaattt ttccattgcc aataatgaaa aatgaatcat ccttgaattt
      421 aatttcaaag caagattcat taaaattaat tctattaaaa aaattatgac atttatccat
      481 tgagaaattt ttcaatagac cagtttcttt caaataacaa taaaacacat aagaaagagg
      541 cctatcagga taagattctg acaatttatc taaatcagaa tttgatatat agaaaaagtc
      601 acgttcattt ttattcatgg tttcaagcct caaatgtcta att
//
LOCUS       DAXHPV010000271          631 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.271, whole genome shotgun sequence.
ACCESSION   DAXHPV010000271 DAXHPV010000000
VERSION     DAXHPV010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 631)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.271"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..305)
                     /locus_tag="ACFM6C_002064"
     CDS             complement(<1..305)
                     /locus_tag="ACFM6C_002064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IgG-binding virulence factor TspB family
                     protein"
                     /protein_id="HFC6159445.1"
                     /translation="MMYSFEANANAVKISETVSVDTGQGAKIHKFVPKNSKTYSSDLI
                     KTVDLTHIPTGAKARINAKITASISRAGVLAGVGKLARLGAKFSTRAVPYVGTALLA"
     gene            complement(289..606)
                     /locus_tag="ACFM6C_002065"
                     /pseudo
     CDS             complement(289..606)
                     /locus_tag="ACFM6C_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249329.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1132 family protein"
BASE COUNT          181 a          130 c          113 g          207 t
ORIGIN      
        1 tgggctaaaa gggctgttcc gacataggga accgcccttg tgctgaattt cgcgcctaag
       61 cgggcaagtt tgccgacccc cgccaatacg ccggcgcggg aaatgctggc ggttattttg
      121 gcgttgattc gggcttttgc gcccgtaggg atgtgtgtta aatctaccgt ttttattaaa
      181 tcagatgaat aagttttact atttttaggt acaaacttat gaattttcgc accttgtccg
      241 gtatcaactg aaacagtttc agatattttt actgcatttg cattcgcttc aaacgaatac
      301 atcatcaaaa ttgcaattat cgacaatttc gcaaaattca aatttgtata ttttatgacc
      361 atctttccga gattctttaa ttaccatttc tcaattatca gaaaatgaga ttagccaaat
      421 atcatgttta attcttctat tccagaaaaa agagaaacaa tcaataacat tttcagactt
      481 attaatcttc gcaaattcaa caaattcaga ttgcgctata accgccatcg attgcccaaa
      541 atacttgcta gacggctgat atttataaag tgccaactgc gcctgcgtaa taaacggctt
      601 gttcatggtt ctgcctttca atgattgttt t
//
LOCUS       DAXHPV010000272          614 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.272, whole genome shotgun sequence.
ACCESSION   DAXHPV010000272 DAXHPV010000000
VERSION     DAXHPV010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 614)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 614)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..614
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.272"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(135..614)
                     /locus_tag="ACFM6C_002066"
                     /pseudo
     CDS             complement(135..614)
                     /locus_tag="ACFM6C_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581013.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
BASE COUNT          164 a          161 c          135 g          154 t
ORIGIN      
        1 ttcgacaaat atcggttacg tttggtttgc acttccgcca gcggacggtt gcggcaggct
       61 ttgcgcataa tgccgtcctg cagccgatgc tctttcagtt ttccgtaggt cggattcttg
      121 aatccgacat tactttaatc gtattcaata gaaaagtccg cattgccgcc accccaatta
      181 tgcggataaa taccctgttt gacataacgg tgaaacgtag aaaaccacca atcggaaatt
      241 tgtcctacat agccatgttt gaccggattg aaatgcagat aatcaaaatg gcaggcaaaa
      301 tcggcctcat cgcggatagt atgttcccaa aagcgttttt gccaaagcct gagattgccg
      361 ccgattaaat atttgctgtg ccgcttgatc tgccgccagc gttccgaata agcagaatca
      421 ttgtccggca gccgccatat ggtatgcaga tggtcgggca ttcaacaccc atgccaaaat
      481 ttcaaacgga taccgttcgc gcaccgccat taccgcctgc cgtaaagcca aacgcaccgc
      541 atcatcggtc aaaatcttct gccgtttatt ggctacaacc gtaaaaaagt aagtgccgcc
      601 attgcggtaa aacg
//
LOCUS       DAXHPV010000273          601 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.273, whole genome shotgun sequence.
ACCESSION   DAXHPV010000273 DAXHPV010000000
VERSION     DAXHPV010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 601)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.273"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..561
                     /locus_tag="ACFM6C_002067"
     CDS             <1..561
                     /locus_tag="ACFM6C_002067"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFC6159446.1"
                     /translation="ADTERFFPQPGETADLRAKYGFADYETVFLFPSTGHTRKGLELL
                     ADFFEHTGLPVKLAVVGSPLPRPMKNVVGLGFCTDMPELYRAADFTIMASLYEPFGLV
                     GVESVLCGTRVVLSENMACTEVMNEEAGFFFSRQNPETLAQAVAQAVSLKKQGGHRLS
                     DPMRALNYNPSLSHHIDRLTDILASV"
BASE COUNT          131 a          209 c          141 g          120 t
ORIGIN      
        1 gcagatacgg aacgcttctt cccgcaaccc ggagaaactg ccgacctgcg cgccaaatac
       61 ggctttgccg actatgaaac cgttttcctg ttcccatcga ccggccacac gcgcaaaggt
      121 ctggaactgc ttgccgactt tttcgaacat accggcctgc ccgtcaagct cgccgttgtc
      181 ggctccccgc tcccccgccc tatgaaaaac gtcgtcgggc tgggcttctg caccgatatg
      241 cccgaactct accgcgccgc cgactttacc attatggcct ccctgtacga acccttcggg
      301 ctggtcggtg tcgaatccgt cctatgcggc acacgcgtcg tcctctccga aaacatggca
      361 tgtacagagg tcatgaacga agaagccgga ttctttttct cacgccaaaa cccggaaacc
      421 ctggcgcaag ccgttgccca agccgtcagc cttaaaaaac agggcggaca ccgcctgtcc
      481 gacccgatgc gtgcactgaa ctacaacccg tccctgtcgc accacatcga ccgactgacc
      541 gacatactgg catccgtata acaaaatgcc gtctgaacga gttttcagac ggcattgctg
      601 c
//
LOCUS       DAXHPV010000274          596 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.274, whole genome shotgun sequence.
ACCESSION   DAXHPV010000274 DAXHPV010000000
VERSION     DAXHPV010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 596)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.274"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            60..518
                     /locus_tag="ACFM6C_002068"
     CDS             60..518
                     /locus_tag="ACFM6C_002068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159447.1"
                     /translation="MPSEHVFGRRFVGGYRSGTSEKGFQAVFGRVVTVENVIRLPEKF
                     GRFSGGLWYWAQQTQVQIRRCAVIVRMPIQPKQTSVFRKWMFDGAKVVRRMEGNLWVF
                     GMVALEKTCFKGQMPSENRFQTAFSVYLKQTGKGSNILQSSYSHKRFIVN"
BASE COUNT          173 a          106 c          161 g          156 t
ORIGIN      
        1 ttccgcacct ttgtccgcct taaagcaggt agacaccgca atgaatcgac gcaaagaaaa
       61 tgccgtctga acatgtgttc gggcggcgtt ttgttggggg gtatcggagc ggaacgtctg
      121 aaaaagggtt tcaggcggtc tttgggcgtg tggtgacagt cgaaaatgtg ataaggctac
      181 ctgaaaagtt tgggagattt tcaggtggcc tttggtattg ggcgcaacag acgcaggtac
      241 agattaggcg gtgtgccgta atcgtacgaa tgccgattca acctaagcag acatcagtat
      301 ttaggaagtg gatgtttgat ggagcaaagg ttgtacgaag gatggaaggc aacctgtggg
      361 tgtttggtat ggtcgcgctt gaaaaaacgt gttttaaggg acaaatgccg tctgaaaatc
      421 ggtttcagac ggcattttct gtttatttaa agcaaacagg aaaaggcagc aatattctgc
      481 agtcttccta ttcacacaag cgttttatag ttaattaaaa acaaaatagt acaatactca
      541 actttgaagg tctaaccatg gcatactctg cggacttaag aaacaaagct ttaaac
//
LOCUS       DAXHPV010000275          581 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.275, whole genome shotgun sequence.
ACCESSION   DAXHPV010000275 DAXHPV010000000
VERSION     DAXHPV010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 581)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.275"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            172..>581
                     /locus_tag="ACFM6C_002069"
     CDS             172..>581
                     /locus_tag="ACFM6C_002069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009348585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HFC6159448.1"
                     /translation="MKTDIQTELTQALLPHEKVWANEEKTILAKNILLDLVEKTDPTI
                     IGLLLNNDELKRHFFVEVNGVLVFKLQDFRFFLDKHSINNSYTKYANRIGLTDGNRFL
                     KDSSDIVLDFPFKDCVLNGGQSTEEGEEIYFKRN"
BASE COUNT          197 a          115 c          114 g          155 t
ORIGIN      
        1 ttccgcaaaa tcacgacaca ctcggacacc cgccccgctt atcgcaactt tgcgaacgcc
       61 cccggaaaca gcaaagacat caaataattg attttattag aatctatttg caaagccatt
      121 tgccgttaca caagaatggc acattaaaat aactgatgag gatttataac gatgaagaca
      181 gacattcaaa ccgaattaac ccaagccctg ctaccacacg aaaaagtatg ggcgaacgaa
      241 gaaaaaacca ttttagccaa aaacattctg ttggatttgg tggaaaaaac cgacccgact
      301 attatcggtt tgttattgaa taatgatgag ttaaaacgcc atttctttgt ggaagtgaat
      361 ggtgttttgg tgtttaaatt gcaggatttt cgttttttct tggataaaca cagcatcaat
      421 aattcctaca caaaatacgc caaccgcatt ggtttgacgg acggcaaccg ctttttgaaa
      481 gacagcagtg atattgtgtt ggattttccg tttaaagact gtgtgttaaa tggcggacaa
      541 agcaccgaag aaggcgaaga aatttatttt aaacgcaata a
//
LOCUS       DAXHPV010000276          574 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.276, whole genome shotgun sequence.
ACCESSION   DAXHPV010000276 DAXHPV010000000
VERSION     DAXHPV010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 574)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.276"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            123..455
                     /locus_tag="ACFM6C_002070"
                     /pseudo
     CDS             123..455
                     /locus_tag="ACFM6C_002070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233337.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
BASE COUNT          158 a          164 c          135 g          117 t
ORIGIN      
        1 ttcgtcattc ccgcgcaggc gggaatccag gtctgtcggc acggaaactt atcgggtaaa
       61 aaggtttctc cggtcctgag ttctagattc ccactttcgt gggaatgacg ggatttaatg
      121 atgccgccgg cgtggcatcc tccaccgaca tcaaaggcaa atatgttgca ggggttaaag
      181 ttgaaaaagg cgtcattacc gccacaatgc tttcaagcgg cgtaaacaac gaaatcaaag
      241 gcaaaaaact ctccctgtgg gccaagcgtc aaaacggttc ggtaaaatgg ttctgcggac
      301 agccggttac gcgcgccgcc aaagccaaag acgacgttac cgccgccacc ggcaccgaca
      361 aaatcgacac caagcacctg ccgtcaacct gccgcgacgc ttcatctgtc gtttgcatag
      421 aaacaccacc tacggctttc tataaaaata cctaaaccgt cattcccacg aaagtgggaa
      481 tctaggacgt aaaatctcaa gaaaccgttt tcccgataag tttccgtgcc gacagaccta
      541 gattcccgcc tgcgcgggaa tgacgaatcc atcc
//
LOCUS       DAXHPV010000277          553 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.277, whole genome shotgun sequence.
ACCESSION   DAXHPV010000277 DAXHPV010000000
VERSION     DAXHPV010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 553)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 553)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.277"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            97..477
                     /locus_tag="ACFM6C_002071"
                     /pseudo
     CDS             97..477
                     /locus_tag="ACFM6C_002071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216136.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
BASE COUNT          163 a          164 c          128 g           98 t
ORIGIN      
        1 cgaaagtggg aatccagaac gtaaaatctc aagaaaccgt tttcccgata agtttccgca
       61 ccgacgaggc tggattcccg cctgcgcggg aatgacgaat ccattctttt ggctgaaggt
      121 caaaaatcag ccgtcaccga gtattacctg aatcacggcg aatggcccgg cgacaacagt
      181 tctgccggcg tggcatcctc ctctgaaatc aaaggcaaat atgttgagaa agttgaagtc
      241 gcaaaaggcg tcattaccgc cacaatgctt tcaaccggcg taaacaaaga aatccaaggc
      301 aaaaaactct ccctgtgggc caagcgtcaa gacggttcgg taaaatggtt ctgcggacag
      361 ccggttacgc gcgccgccaa caacaccgcc gacgacgccg tcaaagccga caccgccgcc
      421 aacgacaaga agatcgacac caagcacctg ccgtcaacct gccgcgatga ttcatctacc
      481 ggttgcatag aaacaccacg cgccgacttc aaacacttcc aaaaaatcag ccgttaccga
      541 gtattgcccg aat
//
LOCUS       DAXHPV010000278          552 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.278, whole genome shotgun sequence.
ACCESSION   DAXHPV010000278 DAXHPV010000000
VERSION     DAXHPV010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 552)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.278"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(106..198)
                     /locus_tag="ACFM6C_002072"
     tRNA            complement(106..198)
                     /locus_tag="ACFM6C_002072"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(162..164),aa:Ser,seq:gct)
     gene            complement(355..>552)
                     /locus_tag="ACFM6C_002073"
     CDS             complement(355..>552)
                     /locus_tag="ACFM6C_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HFC6159449.1"
                     /translation="LAHGHKARADGLAQQPDKAAEANEEEYLTKALSQNLLSTLDVAL
                     ARFPEDAWFQEIKQDAQKHFA"
BASE COUNT          154 a          133 c          112 g          153 t
ORIGIN      
        1 aaattcagaa tcaagacagg gcaataccat actggttttg caccaacccg ctataaaatt
       61 gcataaaaaa atagacactg taaaacacag cgtctatttt ttatctggcg gagtaagagg
      121 gattcgaacc ctcgatgcag gttgacccca catgcttcct tagcagggaa gtgccttcag
      181 cctctcagcc attactccta aggaagctgt aactataatc aacttttccg ataccgtcaa
      241 ggaaaaatgg aaagcaaata ttaatctttt gaaataaaat aagatttacc ctgattatac
      301 ccaatcaggc acttcttttc ttcctgaatg gaaatattcc tgactgccac atcctcaagc
      361 aaaatgcttt tgtgcatcct gtttgatttc ctgaaaccac gcgtcttcag gaaaacgtgc
      421 aagcgcgaca tccaatgttg acagcaggtt ttgcgacagg gctttggtca ggtattcctc
      481 ctcgttggct tctgccgctt tgtcgggctg ttgtgccaaa ccgtcggcac gggctttgtg
      541 tccgtgtgcc aa
//
LOCUS       DAXHPV010000279          522 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.279, whole genome shotgun sequence.
ACCESSION   DAXHPV010000279 DAXHPV010000000
VERSION     DAXHPV010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.279"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..448
                     /locus_tag="ACFM6C_002074"
     CDS             <1..448
                     /locus_tag="ACFM6C_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="opacity family porin"
                     /protein_id="HFC6159450.1"
                     /translation="LQENNGNREDLKTENQENGTFHASSSLGLSAIYDFKLNDKFKPY
                     IGARVAYGHVRHSIDSTKKTTDVVTVATNTPDGAPTIYNVPKTQNAYHESHSIRRLGL
                     GVVAGVGFDITPKLTLDTGYRYHNWGRLENTRFKTHEVSLGMRYRF"
BASE COUNT          142 a          156 c          114 g          110 t
ORIGIN      
        1 gttgcaagaa aacaatggca acagggaaga cctgaagacg gaaaatcagg aaaacggtac
       61 gttccacgcc tcttcttctc tcggcttatc cgccatttac gatttcaaac tcaacgataa
      121 attcaaaccc tatatcggtg cgcgcgtcgc ctacggacac gtcagacaca gcatcgattc
      181 gaccaaaaaa acaacagatg ttgttaccgt cgccaccaat actcctgacg gagcacctac
      241 gatttataat gtgccaaaga cgcaaaacgc ctatcacgaa agccacagca tccgccgctt
      301 aggtcttggt gtcgtcgccg gtgtcggttt cgacatcacg cccaagctga ctttagacac
      361 cggataccgc taccacaact ggggacgctt ggaaaacacc cgcttcaaaa cccacgaagt
      421 ctcattgggc atgcgctacc gcttctgatt ccccgatacc gatgccgtct gaaccttcag
      481 acggcatttt tgattcacct gccgtttaca gacgcggggc gg
//
LOCUS       DAXHPV010000280          503 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.280, whole genome shotgun sequence.
ACCESSION   DAXHPV010000280 DAXHPV010000000
VERSION     DAXHPV010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 503)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.280"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..>503
                     /locus_tag="ACFM6C_002075"
     CDS             <1..>503
                     /locus_tag="ACFM6C_002075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="IS30-like element IS1655 family transposase"
                     /protein_id="HFC6159451.1"
                     /translation="IAKQLNRHKSTISREIRRHRTQGQQYSAEKAQRQSRTIKQRKRQ
                     PYKLDSQLIQHIDTLIRRKLSPEQVCAYLCKHHQITLHHSTIYRYLRQDKSNGSTLWQ
                     HLRICSKPYRKRYGSTWTRGKVPNRVGIENRPAIVDQKSRIGDWEADTIVGKGQKSAL
                     LTLVERV"
BASE COUNT          161 a          166 c          106 g           70 t
ORIGIN      
        1 aatcgccaaa cagcttaacc gccacaaaag caccatcagc cgcgaaatca gacggcaccg
       61 cacccaaggg cagcaataca gcgccgaaaa agcccagcgg caaagccgga ctatcaaaca
      121 gcgtaagcga caaccctata agctcgattc gcagctgatt cagcacatcg acacccttat
      181 ccgccgcaaa ctcagtcccg aacaagtatg cgcctacctg tgcaaacacc accagatcac
      241 gctccaccac agcaccattt accgctacct tcgccaagac aaaagcaacg gcagcacgtt
      301 gtggcaacat ctcagaatat gcagcaaacc ctaccgcaaa cgctacggca gcacatggac
      361 cagaggcaaa gtacccaacc gtgtcggcat agaaaaccga cccgctatcg tcgaccagaa
      421 atcccgtatc ggcgattggg aagccgacac cattgtcggc aaaggacaga aaagcgcatt
      481 attgaccttg gtcgaacgcg tta
//
LOCUS       DAXHPV010000281          490 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.281, whole genome shotgun sequence.
ACCESSION   DAXHPV010000281 DAXHPV010000000
VERSION     DAXHPV010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 490)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.281"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(152..>490)
                     /locus_tag="ACFM6C_002076"
     CDS             complement(152..>490)
                     /locus_tag="ACFM6C_002076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HFC6159452.1"
                     /translation="YHVDKNSDTMHFKGFKAADVHFIRSGSDLVLSASEQDNVRISGF
                     FYGENHRVDTFVFDDAAISNPDFAKYINAGNNLVQSMSVFGSNTAATGGNVDANTQSV
                     QQPLLVTPSA"
BASE COUNT          158 a           98 c           89 g          145 t
ORIGIN      
        1 gtactggttt ttgtgaatcc actatattgc tagaagtgca ccgattaagg ttaattaaaa
       61 tacgaccctt atcccaatat taagaaaaac agcaatcaaa ataaacttga ttgctgtttt
      121 tcagtttaag ccatgaatgt gattaggctc cttatgcaga tggcgttacc aataacggct
      181 gctgtacgga ttgtgtattg gcatccacat ttcctcctgt cgcagcagta ttagaaccga
      241 acacagacat agactgtacc aaattattgc cagcattaat atacttggca aaatctggat
      301 tactgatagc tgcatcatca aagacaaatg tatctacacg atggttttca ccatagaaga
      361 atccggaaat acgtacgttg tcttgttcag aagcgctaag caccaaatca cttccggaac
      421 ggataaaatg aacatctgct gctttaaatc ctttaaagtg catagtgtca gaatttttat
      481 ccacatggta
//
LOCUS       DAXHPV010000282          463 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.282, whole genome shotgun sequence.
ACCESSION   DAXHPV010000282 DAXHPV010000000
VERSION     DAXHPV010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 463)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 463)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.282"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
BASE COUNT          113 a          138 c          113 g           99 t
ORIGIN      
        1 ccccctgacg cggcgggaat ctatcggaaa tgactgaaac cccgcgttct agattcccac
       61 ttccgtggga atgacggttc agttgcgctc cgacaacacc gtaatctcaa aacccgtccg
      121 acaacaccgc aatcttgaaa ttcgtcattc ccgcgcaggc gggaatccag acctgtccgc
      181 acagaaactt atcggataaa aacagttgct caaaccccgc gttctagatt cccactttcg
      241 tgggaatgac ggttcagttg cgtaggactg ggttgtcgaa agggacggat tcgatggatt
      301 cgatgaaaac ggtagaaatg ctggattgat ggaaatggcg ggctgaagcc cactccacag
      361 ccccgcccta caatacgcct tgcgaatctg tcccgcaccc gcccttgtat gcctcaaatg
      421 ggttaaacta cgcccttccc gacttcccgg gtacaggtcc gat
//
LOCUS       DAXHPV010000283          459 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.283, whole genome shotgun sequence.
ACCESSION   DAXHPV010000283 DAXHPV010000000
VERSION     DAXHPV010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 459)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.283"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..325
                     /locus_tag="ACFM6C_002077"
     CDS             <1..325
                     /locus_tag="ACFM6C_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HFC6159453.1"
                     /translation="PDHLHTIWRLPDNDSAYSERWRQIKRHSQYLIGGNLRLWQKRFW
                     EYTIRDEADFACHFDYLHFNPVKHGYVGQISDWGFSTFHRYVKQGIYPHNWGGGNADF
                     SIGYD"
BASE COUNT          121 a          107 c          114 g          117 t
ORIGIN      
        1 gcccgaccat ctgcatacca tatggcggct gccggacaat gattctgctt attcggaacg
       61 ctggcggcaa atcaagcggc acagccaata tttaatcggc ggcaatctca ggctttggca
      121 aaaacgcttt tgggaatata ctatccgcga tgaggccgat tttgcctgcc attttgatta
      181 tctgcatttc aatccggtca aacatggcta tgtaggacaa atttccgatt gggggttttc
      241 tacgtttcac cgttatgtca aacagggtat ttatccgcat aattggggtg gcggcaatgc
      301 ggacttttct attggatacg attgaagtaa tgtcggattc gagaatccga cctacggaaa
      361 actgaaagag catcggctgc aggacggcat tatgcgcaaa gcctgccgca accgtccgct
      421 gacggaaaat caaaccaagc gtaaccgata tttgtcgaa
//
LOCUS       DAXHPV010000284          449 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.284, whole genome shotgun sequence.
ACCESSION   DAXHPV010000284 DAXHPV010000000
VERSION     DAXHPV010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 449)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.284"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
BASE COUNT          114 a           99 c          129 g          107 t
ORIGIN      
        1 tgcaggtttc cgtgcggatg gattcgtcat tcccgcgcag gcgggaatcc agaccttaga
       61 acaacagcaa tattcaaagg ttagctgaag ctttagagat tctggattcc cactttcgcg
      121 ggaatgacgg gattttaggt tcgcgggaat gacgggattt gagattgcag catttatcgg
      181 aaaaaacaga aaccgctccg ccgtcattcc cgcgtaggcg ggaatctagg ccattggaca
      241 gcggcaatat tcaaagatta tctgaaagtc cgagattcta gattcccact ttcgtgggaa
      301 tgacgggatg taggttcgtg ggaatgacgc ggtgcaggtt tccgtgcgga tggattcgtc
      361 attcccgcgt aggcgggaat ccagaccttg ggataacagc aatattcaaa ggttataaaa
      421 gacccgtcat tcccgcgcag gcgggaatc
//
LOCUS       DAXHPV010000285          434 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.285, whole genome shotgun sequence.
ACCESSION   DAXHPV010000285 DAXHPV010000000
VERSION     DAXHPV010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.285"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
BASE COUNT          120 a           88 c          112 g          114 t
ORIGIN      
        1 tgttaatcca ctatattatt tttgacacat tttcatgatt ttaaatcacg tcattcccaa
       61 gtaggcggaa accggcaatg agaagccgca gagacttacc aggaaaaacg gcaagccctc
      121 cgccgtcatt cccgcgcagg cgggaatcta gaaatgaaaa accacggtgt tatcggcaat
      181 gactgaaacc ggagaaatga cgaaattgaa gcgtgcggaa atgtgtcgga aatcgctgaa
      241 gccggataaa ctagattccc gcttttgcgg gaatgacggg attttaggtt tttggtttgt
      301 tttcgcggca atgatgggat tttaggtttt tggtttgttt tcacggcaat gatgggattt
      361 taaattgcag gtatttaccg ggaaaaacgg caagccctcc gccgtcattc ccgcgcaggc
      421 gggaatctag aaat
//
LOCUS       DAXHPV010000286          430 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.286, whole genome shotgun sequence.
ACCESSION   DAXHPV010000286 DAXHPV010000000
VERSION     DAXHPV010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 430)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 430)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.286"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
BASE COUNT          124 a          111 c           85 g          110 t
ORIGIN      
        1 cttcggtttt ttccgataaa tttttgccgc attaaaattc tagattcccg ctttcgcggg
       61 aatgacggcg gagggttttt agttttcccg aaaatgcaca tcatccaaaa tcccgttatt
      121 cccacaaaac agaaaatcaa aaacagcaac ctgaaatccc gtctttcccg cgcaggcggt
      181 aatctgaaca cgtccgtagt gaaacctata tcccgtcatt cgcacgaaag tgggaatcca
      241 ggatgcaggg aaaaccgttt tatccgataa gtttccgcac cgaaaggtct agattcccgc
      301 tttcgcggga atgacggcgg agggttttta gttttctcga taaatgcaca tcatccaaag
      361 tcccgttatt cccacaaaaa cagaaaatca aaaacaacaa tctgaaattc cgtccttccc
      421 gcctgtgcgg
//
LOCUS       DAXHPV010000287          429 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.287, whole genome shotgun sequence.
ACCESSION   DAXHPV010000287 DAXHPV010000000
VERSION     DAXHPV010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 429)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 429)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.287"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..>429)
                     /locus_tag="ACFM6C_002078"
     CDS             complement(<1..>429)
                     /locus_tag="ACFM6C_002078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0017013 - protein flavinylation [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HFC6159454.1"
                     /translation="LIFVNPLYITDKVVALLKANGVPAALVDMGEIRGFDTNGKRTWN
                     VGIRNLDDEEGVLANITMKDKAFATSGGYGTVMDKAGRFTHLFDPRTGAGTPRYKSMS
                     VMADDAAVADALSTAFSIMDLPLIRSVAESRRLKVWLVMP"
BASE COUNT          105 a          139 c           92 g           93 t
ORIGIN      
        1 ccggcatgac cagccaaacc ttaagccgcc tgctttcggc aaccgaccgt atcaagggca
       61 aatccataat ggaaaacgcc gtcgacaagg catcggcaac cgccgcatca tccgccatca
      121 cgctcatact tttataacgc ggcgtacccg cgccggtccg cggatcgaac aaatgggtaa
      181 acctacccgc cttgtccatc accgtcccat agccgcccga agtggcaaac gccttgtctt
      241 tcatcgtgat atttgccaac acgccttctt cgtcgtccag attgcggatg ccgacattcc
      301 aagtccgttt accgtttgta tcaaatcccc tgatttcgcc catatcgacc agcgcggcag
      361 gcacgccgtt tgctttaagc agcgcaacaa ccttgtccgt gatatatagt ggattaacaa
      421 aaatcagga
//
LOCUS       DAXHPV010000288          429 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.288, whole genome shotgun sequence.
ACCESSION   DAXHPV010000288 DAXHPV010000000
VERSION     DAXHPV010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 429)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 429)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.288"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
BASE COUNT          158 a           43 c           82 g          146 t
ORIGIN      
        1 gtcgccttgt cctgattttt gttaatccac tatacgtcct agattcccac tttcgtggga
       61 atgacgggat gtgggttttt gtgcggattt gaaccagtaa gggtggtgtg ggattggtgg
      121 tttgcttagg atcttttgga ttgtattttg tatatacatt tacttgttga taaaagataa
      181 aataaaatta gaaactaaaa gtgagaaaaa attaataata atagggatgt ataaatgtaa
      241 agactccgtt tcatagctaa ggttatctga atatatggaa aaaaagtaaa agtccataaa
      301 actaaaatat atagataatg ctaatgataa tagaattatc actttcctag agtaaggata
      361 atattttttt atcgtaaaaa aatataaaat aggataaata attgccatat agatagattt
      421 tgtaacaaa
//
LOCUS       DAXHPV010000289          424 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.289, whole genome shotgun sequence.
ACCESSION   DAXHPV010000289 DAXHPV010000000
VERSION     DAXHPV010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 424)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 424)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.289"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            1..424
                     /locus_tag="ACFM6C_002079"
                     /pseudo
     CDS             1..424
                     /locus_tag="ACFM6C_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          142 a          118 c           97 g           67 t
ORIGIN      
        1 aaactgatta accgccaact gaccgaaaaa ggcctaaaaa tagagaaagc atccgccgcc
       61 gtcattgacg ccaccattat tcagaccgcc ggcagcaaac agcgccaagc catagaagtc
      121 gatgaagaag gacaaatcag cggccaaacc acaccgagta aggacagcga tgcccgttgg
      181 ataaagaaaa acggcctcta cagactcggt tacaaacaac atacccgtac cgatgcggaa
      241 ggctatatcg agaaactgca catcacccca gccaataccc atgagtgcaa ccacctgttg
      301 cctttgctgg aaggcattac cgaaggcacg accatctatg ccgacaaagg ctatgacagt
      361 gcggaaaacc gaacatctgg aagaacatca gttgttagac ggcattatgc gcgggcagcc
      421 tatt
//
LOCUS       DAXHPV010000290          403 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.290, whole genome shotgun sequence.
ACCESSION   DAXHPV010000290 DAXHPV010000000
VERSION     DAXHPV010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.290"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            108..323
                     /gene="rpmE"
                     /locus_tag="ACFM6C_002080"
     CDS             108..323
                     /gene="rpmE"
                     /locus_tag="ACFM6C_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003681847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HFC6159455.1"
                     /translation="MKQGIHPNYHEVNVTCSCGNKFATKSAMEKENFNIEVCSLCHPF
                     YTGTQKIVDTTGRVDKFNNKFGNLFKR"
BASE COUNT          124 a          105 c           74 g          100 t
ORIGIN      
        1 attttatcga atatcctctt gacgaaacaa cagaaaatag cgagaatgcc gagcttgtct
       61 gaagcatagg tacatcccct atgcccgctt ttttgaaagg aaatcaaatg aaacaaggta
      121 ttcacccgaa ctaccacgaa gtcaacgtta cctgctcttg cggcaacaaa ttcgcaacca
      181 aatccgcgat ggaaaaagaa aacttcaata tcgaggtttg ctccctgtgc cacccgttct
      241 ataccggcac ccaaaaaatc gttgatacca ccggccgcgt ggacaaattc aacaacaaat
      301 tcggcaacct gttcaaacgc tgattgccgc tttgcaagaa ttaagccctg ccatcatttc
      361 gatggcaggg ctttttaata tttggcacac tgacttctta tct
//
LOCUS       DAXHPV010000291          399 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.291, whole genome shotgun sequence.
ACCESSION   DAXHPV010000291 DAXHPV010000000
VERSION     DAXHPV010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.291"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..>399
                     /locus_tag="ACFM6C_002081"
     CDS             <1..>399
                     /locus_tag="ACFM6C_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HFC6159456.1"
                     /translation="YDYATGRKDIIRFTDGITADMLTFTREGNHLLIKAKDGSGQVTV
                     QSYFQNDGSGAYRIDEIHFDNGKVLDVATVKKLVQQSTDGSDRLYAYQSGNTLNGGLG
                     DDYLYGADGDDLLNGDAGNDSIYSGNGNDTL"
BASE COUNT          111 a           96 c          100 g           92 t
ORIGIN      
        1 tacgactacg ctaccggacg caaagacatc atccgcttta ccgacggtat tacagccgat
       61 atgctgactt ttacccgaga gggcaaccat cttcttatca aggcaaaaga cggcagtgga
      121 caagtgactg ttcagtccta tttccagaac gatggctcag gtgcttaccg tatcgatgag
      181 attcatttcg ataacggcaa agtactggat gttgccactg tcaaaaaact ggtacagcaa
      241 tccaccgacg gttcggacag attgtatgcc taccaatccg gaaatacctt aaatggcgga
      301 ttgggcgatg actatctgta cggtgccgac ggggatgacc tgctgaatgg tgatgcaggc
      361 aacgacagta tctacagtgg caatggcaat gatacgctc
//
LOCUS       DAXHPV010000292          383 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.292, whole genome shotgun sequence.
ACCESSION   DAXHPV010000292 DAXHPV010000000
VERSION     DAXHPV010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.292"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            122..301
                     /locus_tag="ACFM6C_002082"
     CDS             122..301
                     /locus_tag="ACFM6C_002082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159457.1"
                     /translation="MFWYVIGFCAFVVALLSLWVNAGAFGMQEDDTPQSDYERRLGLG
                     AKLKNKNPDTDEKRQ"
BASE COUNT           98 a           72 c          102 g          111 t
ORIGIN      
        1 tttgtactgt cttcggctcg ccgccttgtc ctgatttaaa tttaattcac tatatttgcc
       61 cgtgcgtttg tgataaattc ggcactgtat ttgatatgat tttaacaaat cgggaggggc
      121 aatgttttgg tatgtgattg gcttttgcgc ctttgtcgtc gcgctgctgt cgctgtgggt
      181 caatgccggc gcgttcggta tgcaggaaga cgatactcca caatcggatt atgaaaggcg
      241 tttgggcttg ggtgcgaagc tgaaaaacaa aaatccggat acggacgaaa aacggcaata
      301 aagacaacaa atgccgtctg aaaggttttc agacggcatt tgctttggag cggatatagt
      361 ggattaacaa aaatcaggac acg
//
LOCUS       DAXHPV010000293          365 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.293, whole genome shotgun sequence.
ACCESSION   DAXHPV010000293 DAXHPV010000000
VERSION     DAXHPV010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..365
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.293"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(152..>365)
                     /locus_tag="ACFM6C_002083"
     CDS             complement(152..>365)
                     /locus_tag="ACFM6C_002083"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159458.1"
                     /translation="VKEYQPPVGIFLFVCFEKCLFPDFAIPIRFCAVRCVLARTCSKS
                     HVIPVFEALIRDADFQYIFSATTTKA"
BASE COUNT          123 a           85 c           59 g           98 t
ORIGIN      
        1 gtcttttcta aaatatgcag atattcgaat atcgaatttg ccttatgatt acggttttct
       61 gtcttatcta ccttaaaacg ccgatattcc gtttgaacca aattatattt gccgaaacgc
      121 tcaaaaatct cccttacctg cccgacagac atcaagcctt cgttgttgta gctgagaaaa
      181 tatattgaaa gtccgcatcc ctaatcaaag cctcaaatac cggaatcaca tgcgattttg
      241 agcaagtccg cgctaaaaca catcgtacag cgcaaaaccg gatgggaatg gcaaaatccg
      301 gaaacaaaca tttttcaaag catacaaaca aaaaaatacc aaccggaggt tggtattcct
      361 taact
//
LOCUS       DAXHPV010000294          364 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.294, whole genome shotgun sequence.
ACCESSION   DAXHPV010000294 DAXHPV010000000
VERSION     DAXHPV010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.294"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..283)
                     /locus_tag="ACFM6C_002084"
     CDS             complement(<1..283)
                     /locus_tag="ACFM6C_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010791153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HFC6159459.1"
                     /translation="MLKQTTLLAACASFAALLGGCATQQPAPVIAGNSGMQDAPSSAV
                     YNNPYGATPYSPAPAGDAPYVPPVQSAPVYTPPAYVPPSAPAVSGTYIPS"
BASE COUNT           97 a           91 c          108 g           68 t
ORIGIN      
        1 aagaaggaat gtatgtaccc gaaacggcag gtgcagacgg cggaacataa gcaggaggcg
       61 tataaaccgg cgcgctttgc accggcggca cataaggcgc atcgccggca ggagccgggc
      121 tgtacggcgt tgctccatag gggttgttgt aaactgccga agacggcgcg tcctgcatac
      181 ctgaattgcc tgcaatgacg ggggcaggct gctgggtagc acaaccgccc aacagtgcgg
      241 caaaggaggc gcaagccgcc aaaagtgtcg tttgtttcaa cataagataa ccttcatgtt
      301 ccgatatata gcctgaatgc ggtatatcat aataaaaatg cgcgttcttc tcaagcgcaa
      361 agcc
//
LOCUS       DAXHPV010000295          338 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.295, whole genome shotgun sequence.
ACCESSION   DAXHPV010000295 DAXHPV010000000
VERSION     DAXHPV010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.295"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..>338
                     /locus_tag="ACFM6C_002085"
     CDS             <1..>338
                     /locus_tag="ACFM6C_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="opacity family porin"
                     /protein_id="HFC6159460.1"
                     /translation="AAQAASEDGSRSPYYVQADLAYAAERITHDYPQATGANNTSTVS
                     DYFRNIRAHSIHPRVSVGYDFGGWRIAADYASYRKWSNNKYSVNTKELQRNKEYGNWI
                     ELKTENQENG"
BASE COUNT          109 a           83 c           90 g           56 t
ORIGIN      
        1 gcagcgcagg cggcaagtga agacggcagc cgcagcccgt attatgtgca ggcggattta
       61 gcctatgccg ccgaacgcat tacccacgat tatccgcaag caaccggtgc aaacaacaca
      121 agcacagtaa gcgattattt cagaaacatc cgtgcgcatt ccatccaccc ccgggtgtcg
      181 gtcggctacg atttcggcgg ctggaggata gcggcagatt atgccagtta cagaaaatgg
      241 agcaacaata aatattccgt caacacaaaa gagttgcaaa gaaacaagga gtatggcaac
      301 tggatagaac tgaagacgga aaatcaggaa aacggcag
//
LOCUS       DAXHPV010000296          330 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.296, whole genome shotgun sequence.
ACCESSION   DAXHPV010000296 DAXHPV010000000
VERSION     DAXHPV010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.296"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            2..115
                     /locus_tag="ACFM6C_002086"
                     /pseudo
     CDS             2..115
                     /locus_tag="ACFM6C_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611093.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
     gene            179..>330
                     /locus_tag="ACFM6C_002087"
     CDS             179..>330
                     /locus_tag="ACFM6C_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HFC6159461.1"
                     /translation="MSTFFQQTSQAMIAKHIDRFPLLKLDRVIDWQPIEQYLNRQRTR
                     YLRDHRG"
BASE COUNT          103 a          100 c           55 g           72 t
ORIGIN      
        1 catcgccaaa cgaaacttcg tcatcgccgt ttcgtctttg tctaaaacca aaaccgaaac
       61 caacaacccc aaaggtatcg cccatactat cgaatacctt aaaaaacaca aggtcgagac
      121 ctttgcaaaa ttccccaaaa tcccctaaat tcccaccaag acatttaggg gattttccat
      181 gagcaccttc ttccagcaaa cctcccaagc catgattgcc aaacacatcg accgtttccc
      241 gctattgaag ttggaccggg tgattgattg gcagccgatc gaacagtacc tgaatcgtca
      301 aagaacccgt taccttagag atcaccgcgg
//
LOCUS       DAXHPV010000297          324 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.297, whole genome shotgun sequence.
ACCESSION   DAXHPV010000297 DAXHPV010000000
VERSION     DAXHPV010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 324)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 324)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..324
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.297"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(1..324)
                     /locus_tag="ACFM6C_002088"
                     /pseudo
     CDS             complement(1..324)
                     /locus_tag="ACFM6C_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710767.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          118 a           70 c           47 g           89 t
ORIGIN      
        1 aaatacagaa actcaagaaa ataaccttgt gtattgacca tctcaagcaa ttcagaaaaa
       61 tcaagaaatt ttctgaccgt aaacaaacgt ttccctaaaa aaaacgatgt cttcaaaaat
      121 atcgaccaaa taatcatctt cgccgttttc atttttatgg gttaaaacaa cacgggaaaa
      181 atctgttttc agatgcttgc ccgcttgatt gttcggatta ttgtccggaa cgacaaaacc
      241 gtcctcaaaa tcaaagtaga cgttgcgtcc ttctaccttt atctctgtgc aataacaatc
      301 atgcagagaa ataccatccg aaaa
//
LOCUS       DAXHPV010000298          323 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.298, whole genome shotgun sequence.
ACCESSION   DAXHPV010000298 DAXHPV010000000
VERSION     DAXHPV010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 323)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 323)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.298"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
BASE COUNT           89 a           80 c           81 g           73 t
ORIGIN      
        1 cataagttcc cgtgcggaca gacctagatt cccacctgtg tgggaatgac gattcagaag
       61 ttgcccgaaa ctcaaaaaaa aacgaaaccg aacgaaccgg attcccgctt ttacgggaat
      121 gacgggattt tgggctgtgg taatttatcg ggaaaacgga aacccctatg ccgtcattcc
      181 cgcgcaggcg ggaatctagg acgtagaatc taaagaaacc gttttatccg ataagtttct
      241 gtaccgaaga atctggattc ccgctttcgc gggaatgacg gcgtataagt tcccgtgcgg
      301 acagacctat attcccacct gcg
//
LOCUS       DAXHPV010000299          319 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.299, whole genome shotgun sequence.
ACCESSION   DAXHPV010000299 DAXHPV010000000
VERSION     DAXHPV010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 319)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 319)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..319
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.299"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
BASE COUNT           85 a           88 c           63 g           83 t
ORIGIN      
        1 cgtcattccc gccacttttc gtcattccca cgaaagtggg aatctagaat ctcggacttt
       61 cagataatct ttgaatattg ctgttgttct aaggtttgga ttcccgcctg cgcgggaatg
      121 acgaatccat ccgcacggaa acctgcacca cgtcattcct atgaacctac atcccgtcat
      181 tcccacaagg acagaaaacc aaaaacagaa acctaaaatc ccgtcattcc cgcgcaggcg
      241 ggaatctagg tctgtcagtg caggaactta tcggataaaa cggtttcttg agattttaca
      301 tcctggattc ccactttcg
//
LOCUS       DAXHPV010000300          291 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.300, whole genome shotgun sequence.
ACCESSION   DAXHPV010000300 DAXHPV010000000
VERSION     DAXHPV010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 291)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 291)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.300"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..236
                     /locus_tag="ACFM6C_002089"
     CDS             <1..236
                     /locus_tag="ACFM6C_002089"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159462.1"
                     /translation="YATAYWPFSVRESCTSNANPPNDEILSFRNLSEKTETAPPSFPQ
                     KRESKSVGTETYRENGFFRFYVLDSRFCGNDGI"
BASE COUNT           84 a           60 c           60 g           87 t
ORIGIN      
        1 cgtatgctac cgcatactgg cctttttctg ttagggaaag ttgcacttca aatgcgaatc
       61 cgccgaatga tgaaatttta agttttagga atttatcaga aaaaacagaa accgctccgc
      121 cgtcattccc gcaaaagcgg gaatccaagt ctgtcggtac ggaaacttat cgggaaaacg
      181 gtttctttag attttacgtt ctggattccc gcttttgcgg gaatgacggg atttaagttt
      241 caaaatttat tctaaataac tgaaactcaa cgaactagat tcccgctttt g
//
LOCUS       DAXHPV010000301          290 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.301, whole genome shotgun sequence.
ACCESSION   DAXHPV010000301 DAXHPV010000000
VERSION     DAXHPV010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.301"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
BASE COUNT          102 a           58 c           60 g           70 t
ORIGIN      
        1 tttttgttaa tccactataa tttattgaag atggctgaaa ttcaaagtta cagaaattta
       61 taaacaaaaa acagcaaccc gccgccgtca ttcccgcgaa agcgggaatc cagtcccttg
      121 accttaagat aatctttaat tcgtcattcc cgcaaaagcg agaatccgga agcgaaaagt
      181 ggtgggaatg tattagaaat gactgaaact caaaaaaccg gattcccgcc tgcgcgggaa
      241 tgacgattga tacgtttcga tatagtggat taacaaaaat caggacaagg
//
LOCUS       DAXHPV010000302          286 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.302, whole genome shotgun sequence.
ACCESSION   DAXHPV010000302 DAXHPV010000000
VERSION     DAXHPV010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 286)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 286)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..286
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.302"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
BASE COUNT           77 a           76 c           66 g           67 t
ORIGIN      
        1 tatcccgtca ttcccacgaa agtgggaatc tagaacctct gaattttcag acaacctttg
       61 aatattgccg ccgtcccgcg ttctagattc ccgcctgcgc gggaatgacg attcatcagt
      121 ttcccgaaac gcccgaaaaa ccgaaaccga gcaaaccgga ttcccgcctg cgcgggaatg
      181 acgatttata agtttcccga aacgcccaaa aaaaccgaaa tccgacaggc gggatttttg
      241 ctttcgtggg gatgacggga ttttaagtta cggtcattta tcggaa
//
LOCUS       DAXHPV010000303          276 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.303, whole genome shotgun sequence.
ACCESSION   DAXHPV010000303 DAXHPV010000000
VERSION     DAXHPV010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 276)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 276)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.303"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            1..276
                     /locus_tag="ACFM6C_002090"
                     /pseudo
     CDS             1..276
                     /locus_tag="ACFM6C_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
BASE COUNT           76 a           94 c           53 g           53 t
ORIGIN      
        1 tgtccatgtt caaagccgtt ctgctcggac aatggcacag cctctccgat cccgaactcg
       61 aacacagcct catcacccgc atcgacttca acctgttttg acgttttgac gaactgagca
      121 tccccgatta cagcacctta tgccgctacc gcaaccggcg acgcaagacg acaccctgtc
      181 cgaattgccg gaactgatca accgccaact gaccgaaaaa aacctaaaaa tagagaaagc
      241 atccgccgcc gtcgttgacg ccaccattat tcagac
//
LOCUS       DAXHPV010000304          269 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.304, whole genome shotgun sequence.
ACCESSION   DAXHPV010000304 DAXHPV010000000
VERSION     DAXHPV010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 269)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 269)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.304"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..264
                     /locus_tag="ACFM6C_002091"
     CDS             <1..264
                     /locus_tag="ACFM6C_002091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS30 family transposase"
                     /protein_id="HFC6159463.1"
                     /translation="FYQHTKITKALKAETYFCRPYHSWEKGLNENTNGLIRQYFPKQT
                     DFRNISDREIRRVQDELNHRPRKTLGYETPSVLFLNLFQPLIH"
BASE COUNT           89 a           67 c           51 g           62 t
ORIGIN      
        1 ttctaccaac acaccaaaat aaccaaagca ttgaaagcgg agacttattt ttgtcgccct
       61 taccattctt gggagaaagg gctgaatgag aacaccaacg gactcatccg gcaatacttc
      121 cccaaacaaa ccgatttccg taacatcagt gatcgggaga tacgcagggt tcaagatgag
      181 ttgaaccacc gaccaagaaa aacacttggc tacgaaacgc caagtgtttt attcttgaat
      241 ctgttccaac cactaataca ctagtgttg
//
LOCUS       DAXHPV010000305          260 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.305, whole genome shotgun sequence.
ACCESSION   DAXHPV010000305 DAXHPV010000000
VERSION     DAXHPV010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.305"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
BASE COUNT           76 a           61 c           68 g           55 t
ORIGIN      
        1 gcgggaatct agaacgtaga atctgagaaa ccgttttact cgataaattt ccgtgccgag
       61 gggtctggat tcccgccttc gcgggaatga cggcatcagt ttgcaggatt cggcgtgaac
      121 ggtaaaaaca gtgagaatga taagaacgca aaaacggcaa gaatagcggg aatcggcagg
      181 ctgaagccca ccctaccatt atttacacat ccgtaccgct taaatgccgt ctgaaacttc
      241 gtcattcccg tgaaaacggg
//
LOCUS       DAXHPV010000306          254 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.306, whole genome shotgun sequence.
ACCESSION   DAXHPV010000306 DAXHPV010000000
VERSION     DAXHPV010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..254
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.306"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            <1..>254
                     /locus_tag="ACFM6C_002092"
     CDS             <1..>254
                     /locus_tag="ACFM6C_002092"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFC6159464.1"
                     /translation="LRNGCVPWVGAGGGRAVCCYDTGVPIYKGGLQPTNQRPKKKKRW
                     AEAHSTQLRNCYRGDDGILGFCFSVFAGRMGFRLRSFIGK"
BASE COUNT           53 a           47 c           84 g           70 t
ORIGIN      
        1 gctgcgcaac ggttgtgtgc cttgggtggg cgcgggtggc ggccgggcgg tttgttgcta
       61 tgatacggga gttccgatat acaagggtgg gcttcagccc accaatcaac gaccgaaaaa
      121 gaaaaaacgt tgggctgaag cccactctac gcaattacgc aactgttatc gtggggatga
      181 cgggatttta ggtttttgtt tttctgtttt tgcgggaagg atgggtttta ggttgcggtc
      241 atttatcgga aaag
//
LOCUS       DAXHPV010000307          247 bp    DNA     linear   BCT 02-OCT-2024
DEFINITION  TPA_asm: Neisseria meningitidis strain M05 240129
            SAMEA1706768-rid23342653.denovo.307, whole genome shotgun sequence.
ACCESSION   DAXHPV010000307 DAXHPV010000000
VERSION     DAXHPV010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1706768
            Sequence Read Archive: ERR484160
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 247)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 247)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-SEP-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002378148.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002378148.1
            Genome Coverage       :: 270x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 09/29/2024 14:24:22
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 2,093
            CDSs (total)                      :: 2,036
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 41 of 102
            Pseudo Genes (incomplete)         :: 64 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 20 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..247
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1706768-rid23342653.denovo.307"
                     /strain="M05 240129"
                     /db_xref="taxon:487"
     gene            complement(<1..>247)
                     /locus_tag="ACFM6C_002093"
     CDS             complement(<1..>247)
                     /locus_tag="ACFM6C_002093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="opacity family porin"
                     /protein_id="HFC6159465.1"
                     /translation="GVRVAYGHVKHQVHSVETETKIIFTTPTGGAKVGGTIPDKSMSK
                     PPYHESRSISSLGLGVIAGVGFDITPKLTLDTGYRYHN"
BASE COUNT           48 a           62 c           71 g           66 t
ORIGIN      
        1 gttgtggtaa cggtatccgg tgtccaaggt cagcttgggc gtgatgtcga aaccgacacc
       61 ggcgatgaca ccaagcccca agctgctgat gctgcggctt tcgtgatagg gaggtttgct
      121 catcgatttg tctgggatcg tgcctccaac tttagcgcct cccgttggtg tagtgaaaat
      181 aatcttggtt tctgtttcca ccgaatgaac ctgatgttta acgtgtccgt aggcgacgcg
      241 cacaccg
//
